Query 036865
Match_columns 431
No_of_seqs 695 out of 4204
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 10:03:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-39 5.7E-44 310.3 19.4 297 55-383 3-308 (313)
2 4eco_A Uncharacterized protein 100.0 1E-35 3.6E-40 310.6 19.3 299 55-378 27-469 (636)
3 3rgz_A Protein brassinosteroid 100.0 1.5E-35 5E-40 316.1 18.7 310 55-377 9-379 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 7E-34 2.4E-38 303.2 23.6 303 54-379 265-710 (876)
5 2id5_A Lingo-1, leucine rich r 100.0 5.5E-33 1.9E-37 280.5 20.4 322 80-417 5-372 (477)
6 4g8a_A TOLL-like receptor 4; l 100.0 3.5E-33 1.2E-37 290.8 18.9 159 265-426 467-630 (635)
7 3v47_A TOLL-like receptor 5B a 100.0 4E-33 1.4E-37 279.6 18.1 272 127-404 73-436 (455)
8 3rgz_A Protein brassinosteroid 100.0 1.2E-32 4E-37 293.7 19.4 234 121-359 406-722 (768)
9 3t6q_A CD180 antigen; protein- 100.0 3.9E-32 1.3E-36 282.2 19.6 291 122-417 290-602 (606)
10 3zyi_A Leucine-rich repeat-con 100.0 1.4E-31 4.7E-36 268.5 19.9 271 133-422 75-349 (452)
11 2z66_A Variable lymphocyte rec 100.0 3.3E-32 1.1E-36 258.7 12.3 293 79-416 2-302 (306)
12 3zyj_A Leucine-rich repeat-con 100.0 4.4E-31 1.5E-35 263.9 20.3 277 124-422 57-338 (440)
13 4fcg_A Uncharacterized protein 100.0 5.5E-31 1.9E-35 252.9 15.6 274 57-378 26-313 (328)
14 1ziw_A TOLL-like receptor 3; i 100.0 6E-30 2E-34 269.3 24.7 304 121-426 341-675 (680)
15 3vq2_A TLR4, TOLL-like recepto 100.0 1E-30 3.6E-35 271.5 14.1 286 124-422 299-605 (606)
16 3o6n_A APL1; leucine-rich repe 100.0 9.9E-30 3.4E-34 250.0 20.2 264 127-405 87-378 (390)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-29 3.9E-34 258.9 16.1 157 244-405 325-510 (520)
18 3oja_B Anopheles plasmodium-re 100.0 3.6E-29 1.2E-33 259.5 19.9 264 126-404 92-383 (597)
19 1ozn_A Reticulon 4 receptor; N 100.0 2.3E-29 7.9E-34 236.7 16.7 247 160-420 32-280 (285)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.7E-29 2.3E-33 255.7 17.1 144 244-392 354-524 (562)
21 4eco_A Uncharacterized protein 100.0 1.8E-28 6.1E-33 255.9 19.4 248 121-379 261-549 (636)
22 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-28 4.2E-33 235.0 15.6 230 133-379 50-281 (313)
23 2z80_A TOLL-like receptor 2, v 100.0 4E-29 1.4E-33 242.4 11.8 264 133-405 52-343 (353)
24 1xku_A Decorin; proteoglycan, 100.0 2.2E-27 7.7E-32 227.9 23.6 236 133-382 52-309 (330)
25 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-28 8.9E-33 262.8 18.4 287 121-419 278-605 (844)
26 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-27 4.1E-32 230.0 20.8 237 133-383 54-311 (332)
27 3t6q_A CD180 antigen; protein- 100.0 2.9E-27 9.9E-32 245.5 25.3 276 86-378 14-362 (606)
28 2z63_A TOLL-like receptor 4, v 100.0 4.4E-28 1.5E-32 249.6 17.8 141 262-405 416-560 (570)
29 4ecn_A Leucine-rich repeat pro 100.0 3.7E-27 1.3E-31 251.5 23.1 249 121-382 503-792 (876)
30 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-27 9.3E-32 242.8 18.9 276 85-378 5-422 (549)
31 3v47_A TOLL-like receptor 5B a 99.9 6.4E-27 2.2E-31 234.4 20.8 234 121-359 91-413 (455)
32 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-27 8.3E-32 243.1 17.3 275 122-405 87-539 (549)
33 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-26 3.7E-31 223.3 19.9 284 73-377 22-331 (332)
34 3o6n_A APL1; leucine-rich repe 99.9 3.5E-26 1.2E-30 224.7 23.7 247 121-379 56-331 (390)
35 3j0a_A TOLL-like receptor 5; m 99.9 1.4E-26 4.8E-31 249.2 22.8 264 100-377 25-373 (844)
36 1ziw_A TOLL-like receptor 3; i 99.9 6.6E-26 2.3E-30 238.5 26.7 280 82-377 2-364 (680)
37 2o6q_A Variable lymphocyte rec 99.9 1.5E-26 5E-31 215.9 18.8 195 160-392 37-232 (270)
38 3oja_B Anopheles plasmodium-re 99.9 2.7E-26 9.2E-31 237.9 22.2 248 121-379 62-337 (597)
39 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-26 5.5E-31 239.9 20.2 94 126-222 73-167 (606)
40 4fcg_A Uncharacterized protein 99.9 1.8E-26 6.1E-31 221.5 18.7 224 100-354 82-314 (328)
41 1xku_A Decorin; proteoglycan, 99.9 6.8E-26 2.3E-30 217.5 22.2 234 134-381 32-278 (330)
42 1ozn_A Reticulon 4 receptor; N 99.9 5.7E-26 2E-30 213.5 20.5 233 132-383 31-265 (285)
43 1p9a_G Platelet glycoprotein I 99.9 1.2E-26 4.1E-31 218.8 14.5 191 185-393 32-222 (290)
44 2z7x_B TOLL-like receptor 1, v 99.9 2.4E-26 8.3E-31 234.2 17.8 225 123-359 59-392 (520)
45 2id5_A Lingo-1, leucine rich r 99.9 1.2E-25 4.2E-30 226.6 21.0 247 124-379 25-309 (477)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.8E-25 6.3E-30 230.0 22.0 258 100-379 53-463 (562)
47 4fmz_A Internalin; leucine ric 99.9 8.3E-25 2.8E-29 211.2 23.7 238 124-381 80-326 (347)
48 2z62_A TOLL-like receptor 4, v 99.9 5.3E-26 1.8E-30 212.7 14.0 232 160-405 28-266 (276)
49 1wwl_A Monocyte differentiatio 99.9 1.5E-26 5.2E-31 220.4 8.7 234 124-379 56-309 (312)
50 4fmz_A Internalin; leucine ric 99.9 2.8E-24 9.4E-29 207.6 24.5 230 128-379 61-300 (347)
51 3o53_A Protein LRIM1, AGAP0063 99.9 3.4E-26 1.2E-30 218.5 10.6 224 130-383 31-254 (317)
52 2z66_A Variable lymphocyte rec 99.9 1.5E-25 5E-30 212.8 13.7 256 100-382 29-290 (306)
53 2z63_A TOLL-like receptor 4, v 99.9 7.1E-25 2.4E-29 225.7 18.5 93 125-221 68-162 (570)
54 1o6v_A Internalin A; bacterial 99.9 9.2E-24 3.2E-28 212.3 26.2 231 129-380 86-345 (466)
55 3zyi_A Leucine-rich repeat-con 99.9 5.2E-24 1.8E-28 213.3 23.2 246 85-357 55-306 (452)
56 3oja_A Leucine-rich immune mol 99.9 2.5E-25 8.6E-30 224.8 12.5 220 133-382 34-253 (487)
57 1wwl_A Monocyte differentiatio 99.9 3.6E-26 1.2E-30 217.8 5.9 233 128-381 38-289 (312)
58 3bz5_A Internalin-J, INLJ; leu 99.9 8.3E-24 2.8E-28 211.9 22.9 239 100-377 43-297 (457)
59 2z62_A TOLL-like receptor 4, v 99.9 5.7E-24 2E-28 198.8 18.3 208 133-358 28-241 (276)
60 3zyj_A Leucine-rich repeat-con 99.9 1.7E-23 5.8E-28 208.9 22.9 218 121-356 76-294 (440)
61 3oja_A Leucine-rich immune mol 99.9 2.1E-25 7.1E-30 225.4 9.0 244 100-384 35-287 (487)
62 1o6v_A Internalin A; bacterial 99.9 5.9E-23 2E-27 206.4 26.7 234 124-379 104-366 (466)
63 3o53_A Protein LRIM1, AGAP0063 99.9 4E-25 1.4E-29 211.1 8.1 236 100-376 35-272 (317)
64 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-23 1.4E-27 206.8 22.9 211 126-361 35-253 (457)
65 2z80_A TOLL-like receptor 2, v 99.9 7E-24 2.4E-28 205.4 13.0 230 124-358 66-318 (353)
66 1jl5_A Outer protein YOPM; leu 99.9 2.9E-23 1E-27 207.7 15.9 238 99-379 11-270 (454)
67 3rfs_A Internalin B, repeat mo 99.9 3.7E-23 1.3E-27 193.0 15.3 209 129-364 37-245 (272)
68 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-22 7.1E-27 209.4 21.0 130 100-243 53-186 (635)
69 2o6q_A Variable lymphocyte rec 99.9 8.8E-22 3E-26 183.4 22.3 219 80-358 3-222 (270)
70 1jl5_A Outer protein YOPM; leu 99.9 4.1E-21 1.4E-25 192.2 26.8 153 132-306 110-270 (454)
71 4glp_A Monocyte differentiatio 99.9 1.9E-22 6.3E-27 191.9 16.2 227 132-379 63-307 (310)
72 3g06_A SSPH2 (leucine-rich rep 99.9 3.5E-21 1.2E-25 198.9 25.7 210 133-379 61-297 (622)
73 3m19_A Variable lymphocyte rec 99.9 2.7E-22 9.2E-27 184.8 15.4 181 160-356 14-194 (251)
74 3rfs_A Internalin B, repeat mo 99.9 5.7E-22 1.9E-26 184.9 17.2 186 155-358 37-222 (272)
75 3m19_A Variable lymphocyte rec 99.9 8.2E-22 2.8E-26 181.6 17.4 160 160-332 35-194 (251)
76 2xwt_C Thyrotropin receptor; s 99.9 6.2E-22 2.1E-26 181.0 16.0 197 134-351 32-236 (239)
77 2v9t_B SLIT homolog 2 protein 99.9 4.4E-22 1.5E-26 179.8 11.5 175 245-422 34-209 (220)
78 1h6u_A Internalin H; cell adhe 99.9 4.2E-21 1.4E-25 182.3 17.1 195 129-355 37-231 (308)
79 2v70_A SLIT-2, SLIT homolog 2 99.9 9.1E-22 3.1E-26 177.7 11.2 172 247-421 36-209 (220)
80 2ca6_A RAN GTPase-activating p 99.9 7.7E-23 2.6E-27 200.5 3.4 233 124-358 23-320 (386)
81 3g06_A SSPH2 (leucine-rich rep 99.9 2.2E-20 7.6E-25 192.9 21.9 205 131-366 79-309 (622)
82 2ca6_A RAN GTPase-activating p 99.9 5.7E-23 2E-27 201.4 2.3 232 149-382 22-319 (386)
83 2o6s_A Variable lymphocyte rec 99.9 8.7E-21 3E-25 169.5 15.8 161 160-340 28-188 (208)
84 2xwt_C Thyrotropin receptor; s 99.9 5.1E-21 1.8E-25 174.8 14.6 198 160-377 31-237 (239)
85 3cvr_A Invasion plasmid antige 99.8 9E-21 3.1E-25 193.7 16.9 214 134-392 60-293 (571)
86 1z7x_W Ribonuclease inhibitor; 99.8 2.9E-23 9.9E-28 208.1 -2.7 267 100-379 86-411 (461)
87 3goz_A Leucine-rich repeat-con 99.8 6.8E-22 2.3E-26 192.1 6.7 236 121-361 10-304 (362)
88 1h6u_A Internalin H; cell adhe 99.8 3.3E-20 1.1E-24 176.2 17.7 198 155-383 37-234 (308)
89 4glp_A Monocyte differentiatio 99.8 1.8E-20 6.1E-25 178.1 15.8 204 131-355 89-308 (310)
90 2ast_B S-phase kinase-associat 99.8 1.5E-22 5.1E-27 194.4 0.6 259 80-379 34-306 (336)
91 1p9a_G Platelet glycoprotein I 99.8 6.5E-20 2.2E-24 172.6 18.2 206 128-356 5-210 (290)
92 4ay9_X Follicle-stimulating ho 99.8 9.9E-20 3.4E-24 176.0 17.5 113 81-225 6-121 (350)
93 1z7x_W Ribonuclease inhibitor; 99.8 2E-22 6.7E-27 202.0 -2.2 204 125-330 48-297 (461)
94 1w8a_A SLIT protein; signaling 99.8 2.8E-20 9.4E-25 164.2 9.9 175 246-426 11-187 (192)
95 2xot_A Amphoterin-induced prot 99.8 9.8E-20 3.3E-24 176.8 14.4 185 163-387 21-210 (361)
96 3goz_A Leucine-rich repeat-con 99.8 4.1E-21 1.4E-25 186.7 3.2 238 138-381 3-299 (362)
97 2ast_B S-phase kinase-associat 99.8 3.9E-20 1.3E-24 177.5 10.0 222 134-376 48-282 (336)
98 3e6j_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 161.8 13.4 166 209-392 20-186 (229)
99 2wfh_A SLIT homolog 2 protein 99.8 1.2E-19 4.1E-24 160.3 9.7 169 246-421 13-182 (193)
100 2o6s_A Variable lymphocyte rec 99.8 5.6E-19 1.9E-23 157.7 14.0 180 162-364 9-188 (208)
101 3cvr_A Invasion plasmid antige 99.8 3.1E-18 1.1E-22 175.0 19.1 179 160-380 59-244 (571)
102 4ay9_X Follicle-stimulating ho 99.8 7.8E-19 2.7E-23 169.7 13.3 232 136-383 12-262 (350)
103 1h6t_A Internalin B; cell adhe 99.8 3.5E-18 1.2E-22 160.8 15.1 169 160-355 46-214 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 5.8E-18 2E-22 152.6 14.5 157 163-359 14-171 (220)
105 1h6t_A Internalin B; cell adhe 99.8 5E-18 1.7E-22 159.7 13.7 174 129-332 42-215 (291)
106 2v9t_B SLIT homolog 2 protein 99.8 1.4E-17 4.7E-22 150.1 15.3 154 163-356 14-167 (220)
107 2xot_A Amphoterin-induced prot 99.7 6.7E-18 2.3E-22 163.9 12.5 175 137-330 22-202 (361)
108 1m9s_A Internalin B; cell inva 99.7 2.5E-17 8.7E-22 169.8 15.7 169 160-355 43-211 (605)
109 3e6j_A Variable lymphocyte rec 99.7 7E-17 2.4E-21 146.4 16.7 157 161-358 20-176 (229)
110 1m9s_A Internalin B; cell inva 99.7 3.3E-17 1.1E-21 169.0 15.0 173 129-332 39-212 (605)
111 4ezg_A Putative uncharacterize 99.7 5.2E-17 1.8E-21 143.7 12.3 150 160-354 44-194 (197)
112 1dce_A Protein (RAB geranylger 99.7 5.5E-20 1.9E-24 188.5 -8.4 109 244-359 442-551 (567)
113 4ezg_A Putative uncharacterize 99.7 1.1E-16 3.7E-21 141.7 13.6 154 129-330 40-194 (197)
114 3ogk_B Coronatine-insensitive 99.7 2.1E-18 7.3E-23 178.1 2.3 246 125-377 212-524 (592)
115 4b8c_D Glucose-repressible alc 99.7 6.9E-18 2.3E-22 178.1 4.4 164 164-351 205-369 (727)
116 1xeu_A Internalin C; cellular 99.7 5.1E-17 1.7E-21 150.5 9.5 171 131-332 17-187 (263)
117 1xeu_A Internalin C; cellular 99.7 4.8E-17 1.6E-21 150.7 8.3 169 160-356 19-187 (263)
118 1w8a_A SLIT protein; signaling 99.7 5.7E-16 2E-20 136.4 14.1 154 247-405 33-187 (192)
119 3ogk_B Coronatine-insensitive 99.6 6.3E-17 2.2E-21 167.1 5.3 226 127-357 264-529 (592)
120 2o6r_A Variable lymphocyte rec 99.6 4.7E-15 1.6E-19 128.6 13.4 113 244-358 29-141 (177)
121 1dce_A Protein (RAB geranylger 99.6 3.3E-19 1.1E-23 182.7 -15.5 186 181-381 346-548 (567)
122 2ell_A Acidic leucine-rich nuc 99.6 3.7E-15 1.3E-19 128.1 12.2 132 184-330 24-160 (168)
123 2ell_A Acidic leucine-rich nuc 99.6 3.7E-15 1.3E-19 128.1 11.6 135 160-312 24-165 (168)
124 2wfh_A SLIT homolog 2 protein 99.6 2.2E-14 7.4E-19 126.4 14.5 110 245-357 33-142 (193)
125 3g39_A Variable lymphocyte rec 99.6 2.2E-15 7.6E-20 129.9 7.8 119 269-393 11-130 (170)
126 3sb4_A Hypothetical leucine ri 99.6 4.6E-15 1.6E-19 141.9 10.4 227 132-368 24-324 (329)
127 4b8c_D Glucose-repressible alc 99.6 4.6E-16 1.6E-20 164.1 3.7 257 56-354 130-404 (727)
128 2o6r_A Variable lymphocyte rec 99.6 2.8E-14 9.6E-19 123.7 14.3 153 246-404 10-165 (177)
129 2je0_A Acidic leucine-rich nuc 99.6 4.5E-15 1.5E-19 124.9 8.4 126 244-374 18-148 (149)
130 2je0_A Acidic leucine-rich nuc 99.5 1.6E-14 5.5E-19 121.4 9.4 127 184-349 17-148 (149)
131 2p1m_B Transport inhibitor res 99.5 4.4E-16 1.5E-20 160.8 -2.2 133 244-378 373-518 (594)
132 2p1m_B Transport inhibitor res 99.5 7.5E-16 2.6E-20 159.0 -1.2 170 206-378 287-493 (594)
133 1a9n_A U2A', U2A'; complex (nu 99.5 5.2E-14 1.8E-18 121.9 7.9 89 262-354 59-153 (176)
134 2r9u_A Variable lymphocyte rec 99.5 4.9E-14 1.7E-18 121.9 7.3 116 270-391 15-131 (174)
135 1ds9_A Outer arm dynein; leuci 99.5 4.3E-16 1.5E-20 137.9 -6.1 132 179-354 43-185 (198)
136 3g39_A Variable lymphocyte rec 99.4 8.9E-13 3.1E-17 113.5 11.8 108 246-358 12-119 (170)
137 1a9n_A U2A', U2A'; complex (nu 99.4 2.9E-13 9.8E-18 117.2 8.4 126 244-378 20-152 (176)
138 2ifg_A High affinity nerve gro 99.4 1.9E-13 6.4E-18 131.6 7.8 128 272-405 13-145 (347)
139 2r9u_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 111.7 12.8 112 246-363 15-126 (174)
140 1ds9_A Outer arm dynein; leuci 99.4 4.3E-15 1.5E-19 131.4 -4.9 137 149-330 38-185 (198)
141 3sb4_A Hypothetical leucine ri 99.3 2.4E-12 8.3E-17 122.9 9.9 212 132-348 48-328 (329)
142 4fdw_A Leucine rich hypothetic 99.3 2.6E-11 8.8E-16 118.8 16.1 235 128-376 131-380 (401)
143 2ifg_A High affinity nerve gro 99.3 1.6E-11 5.5E-16 118.0 12.8 132 247-384 12-146 (347)
144 4fdw_A Leucine rich hypothetic 99.1 1E-09 3.5E-14 107.5 17.2 228 132-377 112-356 (401)
145 3un9_A NLR family member X1; l 99.1 1.3E-12 4.4E-17 126.9 -4.3 166 160-331 72-253 (372)
146 3un9_A NLR family member X1; l 99.0 5.7E-11 2E-15 115.2 1.7 150 207-356 71-254 (372)
147 2ra8_A Uncharacterized protein 98.9 2.7E-09 9.2E-14 102.8 7.8 84 291-377 250-341 (362)
148 2ra8_A Uncharacterized protein 98.7 3.4E-09 1.2E-13 102.0 3.6 190 126-352 132-341 (362)
149 3rfe_A Platelet glycoprotein I 98.6 1.7E-08 5.8E-13 82.3 3.8 98 321-422 12-114 (130)
150 4gt6_A Cell surface protein; l 98.5 1.6E-06 5.5E-11 84.5 15.9 109 261-377 259-368 (394)
151 4fs7_A Uncharacterized protein 98.4 2.4E-06 8.2E-11 83.2 12.3 182 160-351 162-353 (394)
152 4fs7_A Uncharacterized protein 98.4 7.1E-06 2.4E-10 79.9 15.3 185 178-376 156-353 (394)
153 1io0_A Tropomodulin; LRR prote 98.3 9.3E-08 3.2E-12 83.0 0.7 94 261-354 59-164 (185)
154 1io0_A Tropomodulin; LRR prote 98.2 4.4E-07 1.5E-11 78.7 1.7 117 261-378 30-163 (185)
155 4gt6_A Cell surface protein; l 98.1 5.1E-05 1.8E-09 73.7 16.1 90 127-218 81-170 (394)
156 3rw6_A Nuclear RNA export fact 98.1 2.8E-06 9.5E-11 77.8 4.7 81 265-347 168-257 (267)
157 3rw6_A Nuclear RNA export fact 98.0 3.7E-06 1.3E-10 77.0 4.7 77 157-236 168-257 (267)
158 4h09_A Hypothetical leucine ri 98.0 0.00029 1E-08 67.8 17.6 85 262-350 235-319 (379)
159 3e4g_A ATP synthase subunit S, 97.8 7.3E-06 2.5E-10 69.8 3.2 83 268-352 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 2E-05 6.8E-10 67.1 3.1 82 245-328 63-150 (176)
161 4h09_A Hypothetical leucine ri 97.6 0.0015 5.1E-08 62.8 16.5 104 243-351 240-343 (379)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00023 8E-09 61.6 2.5 93 261-353 64-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00053 1.8E-08 59.3 1.8 90 263-352 37-137 (197)
164 3rfe_A Platelet glycoprotein I 96.5 0.0043 1.5E-07 49.9 6.3 57 297-355 12-69 (130)
165 2lz0_A Uncharacterized protein 38.9 41 0.0014 24.8 4.5 42 284-326 11-52 (100)
166 2lz0_A Uncharacterized protein 36.5 49 0.0017 24.4 4.6 40 260-302 13-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.7e-39 Score=310.35 Aligned_cols=297 Identities=27% Similarity=0.467 Sum_probs=254.7
Q ss_pred CCHHHHHHHHHHHHhcCC-----CCCCCCCCCCCCCccceEeCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCc--cccc
Q 036865 55 TEPKEQEAVYDIMRATGN-----DWATEIPDVCRGRWHGIECMPDKENVYHVVSLMFGALSDDTAFPTCDPTRS--HISR 127 (431)
Q Consensus 55 ~~~~e~~~l~~~~~~~~~-----~w~~~~~~~C~~~w~gv~C~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~--~l~~ 127 (431)
|.++|++|+++++++.+. +|.. ..+||.+.|.||+|+... ...+|+.|++.+.. +.+ .+|+
T Consensus 3 c~~~~~~aL~~~k~~~~~~~~l~~W~~-~~~~C~~~w~gv~C~~~~-~~~~l~~L~L~~~~----------l~~~~~~~~ 70 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLN----------LPKPYPIPS 70 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGTTCCT-TSCTTTTCSTTEEECCSS-SCCCEEEEEEECCC----------CSSCEECCG
T ss_pred CCHHHHHHHHHHHHhcCCcccccCCCC-CCCCCcCCCcceEeCCCC-CCceEEEEECCCCC----------ccCCcccCh
Confidence 788999999999998753 6865 357895569999997532 12379999998754 667 8899
Q ss_pred cccCCCCCcEEEcCc-ccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccC
Q 036865 128 SITKLPYLRTLFFYR-CFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGR 206 (431)
Q Consensus 128 ~l~~l~~L~~L~l~~-~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 206 (431)
.+.++++|++|++++ |... +.+|..++.+ ++|++|++++|.+.+.+|..|.++++|++|++++|.+++.+|..+.+
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~--~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLV--GPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEE--SCCCGGGGGC-TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred hHhCCCCCCeeeCCCCCccc--ccCChhHhcC-CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 999999999999985 5442 6789999999 89999999999999899999999999999999999999999999999
Q ss_pred CCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC-CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCC
Q 036865 207 INGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM-DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIP 285 (431)
Q Consensus 207 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~ 285 (431)
+++|++|++++|.+++.+|... ..+. .|++|++++|.+++.+|..+..++ |++|++++|.++ + ..
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l-----------~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~-~-~~ 213 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSY-----------GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE-G-DA 213 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGG-----------GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE-E-CC
T ss_pred CCCCCeEECcCCcccCcCCHHH-----------hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc-C-cC
Confidence 9999999999999987777541 1122 567777888888888899999887 999999999984 3 34
Q ss_pred hhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHh
Q 036865 286 NYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVW 365 (431)
Q Consensus 286 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~ 365 (431)
...+..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.. ..+.
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~ 291 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGG
T ss_pred CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccc
Confidence 44788999999999999999977666 888999999999999999999999999999999999999999999987 6677
Q ss_pred hccceEEcccCCCcccCC
Q 036865 366 KMKSKLRLHNNSGLCYNA 383 (431)
Q Consensus 366 ~l~~~l~l~~Np~~c~~~ 383 (431)
.+. .+++++|++.|+..
T Consensus 292 ~L~-~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 292 RFD-VSAYANNKCLCGSP 308 (313)
T ss_dssp GSC-GGGTCSSSEEESTT
T ss_pred ccC-hHHhcCCCCccCCC
Confidence 776 89999999999853
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-35 Score=310.58 Aligned_cols=299 Identities=19% Similarity=0.269 Sum_probs=206.0
Q ss_pred CCHHHHHHHHHHHHhcC-C-------------CCCCCCCCCCCCCc---cceEeCCCCCCeeEEEEEecCCCCCCCCCCC
Q 036865 55 TEPKEQEAVYDIMRATG-N-------------DWATEIPDVCRGRW---HGIECMPDKENVYHVVSLMFGALSDDTAFPT 117 (431)
Q Consensus 55 ~~~~e~~~l~~~~~~~~-~-------------~w~~~~~~~C~~~w---~gv~C~~~~~~~~~v~~l~l~~~~~~~~~~~ 117 (431)
...+|++||.+++.+.+ . +|.. ..++| .| .||+|+.. .||+.|++.+..
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c--~w~~~~GV~C~~~----~~V~~L~L~~~~------- 92 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELD--MWGAQPGVSLNSN----GRVTGLSLEGFG------- 92 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGG--GTTCCTTEEECTT----CCEEEEECTTSC-------
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcc--cccCCCCeEEcCC----CCEEEEEecCcc-------
Confidence 44579999999998864 2 3543 25778 79 99999754 389999998765
Q ss_pred CCCCCccccccccCCCCCcEEEcCcccC-------C--------------------------------------------
Q 036865 118 CDPTRSHISRSITKLPYLRTLFFYRCFT-------H-------------------------------------------- 146 (431)
Q Consensus 118 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~-------~-------------------------------------------- 146 (431)
+.|.+|++++++++|++|++++|.. .
T Consensus 93 ---l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~ 169 (636)
T 4eco_A 93 ---ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169 (636)
T ss_dssp ---CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHC
T ss_pred ---cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcC
Confidence 7888889999999999999988732 0
Q ss_pred ------------------------CCCCCChhhhcccccccEEEeecCCCCCC-----------------Cchhhc--CC
Q 036865 147 ------------------------NPQPIPAFLGQLGQTLQTLVLRENGNVGP-----------------IPSELG--NL 183 (431)
Q Consensus 147 ------------------------~~~~ip~~i~~l~~~L~~L~L~~n~~~~~-----------------~p~~~~--~l 183 (431)
....||..++++ ++|++|++++|.+.+. +|..++ ++
T Consensus 170 l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l 248 (636)
T 4eco_A 170 PQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248 (636)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhhhhccccCCCccCCHHHhcc-cCCCEEECcCCccccccccccccccccchhcccCchhhhhccc
Confidence 011277788888 7889999988888775 888888 88
Q ss_pred CCCCEEEeecccCCccCcccccCCCCCcEEEecCCc-CCC-CCCCC--C------CCCcCEEEcCCCCCC----------
Q 036865 184 TRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNK-LTG-SIPSI--S------FPVLNVLDLNQNLLM---------- 243 (431)
Q Consensus 184 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~--~------l~~L~~L~l~~n~l~---------- 243 (431)
++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|.. . +++|++|++++|+++
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~ 328 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhcc
Confidence 888888888888888888888888888888888887 776 55543 2 267777777766542
Q ss_pred --CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCC-CcEEEeeCCcCCCCCchhcCCCC--C
Q 036865 244 --DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRN-LMILILSNMNLRGPIPESLGQLP--N 318 (431)
Q Consensus 244 --~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~ 318 (431)
+|++|++++|.+.|.+| .+..+++|++|++++|.++ .+|. .+..+++ |++|++++|+++ .+|..+..++ +
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~-~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPA-NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCT-TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccH-hhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 56677777777776666 6666666666666666664 4444 3555565 666666666666 5555554433 5
Q ss_pred CcEeecccccCCCCcchhhc-------CCcCCcEEEccCCCCCCCCccchHH-HhhccceEEcccCCC
Q 036865 319 LHVLHLDENHLNGSIPNSFK-------NLKHVSELRLNNNGLTGPLPFEREM-VWKMKSKLRLHNNSG 378 (431)
Q Consensus 319 L~~L~L~~N~l~~~~p~~l~-------~l~~L~~L~L~~N~l~g~ip~~~~~-l~~l~~~l~l~~Np~ 378 (431)
|++|++++|.+++.+|..+. .+++|++|++++|.++ .+|..+.. +..++ .|++++|..
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~-~L~Ls~N~l 469 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLS-SINLMGNML 469 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCS-EEECCSSCC
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCC-EEECCCCCC
Confidence 66666666666655555555 5555666666666655 44444332 33333 555555543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-35 Score=316.09 Aligned_cols=310 Identities=25% Similarity=0.321 Sum_probs=215.9
Q ss_pred CCHHHHHHHHHHHHhcC-----CCCCCCCCCCCCCCccceEeCCCCCCeeEEEEEecCCCCCCCC---CC----------
Q 036865 55 TEPKEQEAVYDIMRATG-----NDWATEIPDVCRGRWHGIECMPDKENVYHVVSLMFGALSDDTA---FP---------- 116 (431)
Q Consensus 55 ~~~~e~~~l~~~~~~~~-----~~w~~~~~~~C~~~w~gv~C~~~~~~~~~v~~l~l~~~~~~~~---~~---------- 116 (431)
..++|++||+++++... .+|.. ..||| .|.||+|+ . .||+.|++.+....+. ++
T Consensus 9 ~~~~~~~all~~k~~~~~~~~l~~W~~-~~~~C--~w~gv~C~-~----~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKNLLPDWSS-NKNPC--TFDGVTCR-D----DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSSTTCCT-TSCGG--GSTTEEEE-T----TEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred CCHHHHHHHHHHHhhCCCcccccCCCC-CCCCc--CCcceEEC-C----CcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 35679999999997653 47874 45889 89999997 2 2899999976542111 00
Q ss_pred CC-CCCCcc--ccccccCCCCCcEEEcCcccCCCCCCCCh--hhhcccccccEEEeecCCCCCCCchhh-cCCCCCCEEE
Q 036865 117 TC-DPTRSH--ISRSITKLPYLRTLFFYRCFTHNPQPIPA--FLGQLGQTLQTLVLRENGNVGPIPSEL-GNLTRLKVLD 190 (431)
Q Consensus 117 ~~-~~~~~~--l~~~l~~l~~L~~L~l~~~~~~~~~~ip~--~i~~l~~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~ 190 (431)
.. ....+. +|+.++++++|++|++++|... +.+|. .++.+ ++|++|++++|.+.+.+|..+ .++++|++|+
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLS--GPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEE--EEGGGGGGGGGC-TTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCC--CcCCChHHHhCC-CCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 00 011122 3367888888888888887653 45676 78888 789999998888887777665 7888888888
Q ss_pred eecccCCccCccc---ccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC----------CCcEEEccCCCCCC
Q 036865 191 LHKNNLNGSIPVS---LGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM----------DLILLDLSYNHLSG 257 (431)
Q Consensus 191 Ls~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~----------~L~~L~ls~n~l~~ 257 (431)
+++|.+++..|.. +.++++|++|++++|.+.+..+...+++|++|++++|++. +|++|++++|.+++
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC
Confidence 8888888777766 7788888888888888877776667888888888887653 68888888888887
Q ss_pred CCcccccCCCCcceeecCCCCCCCCCCC----------------------hhhhcCCCCCcEEEeeCCcCCCCCchhcCC
Q 036865 258 PFPISIRNLNSLQALILKSNSMGPITIP----------------------NYSFIGMRNLMILILSNMNLRGPIPESLGQ 315 (431)
Q Consensus 258 ~~p~~l~~l~~L~~L~L~~n~l~~~~i~----------------------~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 315 (431)
.+|..+.++++|++|++++|.++ +.++ ......+++|++|++++|++++.+|..++.
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFV-GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCE-ESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCccc-CccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 77888888888888888887763 2222 211112355666666666666556666666
Q ss_pred CCCCcEeecccccCCCCcchh-hcCCcCCcEEEccCCCCCCCCccchHHHh-hccceEEcccCC
Q 036865 316 LPNLHVLHLDENHLNGSIPNS-FKNLKHVSELRLNNNGLTGPLPFEREMVW-KMKSKLRLHNNS 377 (431)
Q Consensus 316 l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~g~ip~~~~~l~-~l~~~l~l~~Np 377 (431)
+++|++|++++|.+++.+|.. +.++++|++|++++|+++|.+|..+..+. .++ .+++++|.
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~-~L~Ls~N~ 379 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL-TLDLSSNN 379 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS-EEECCSSE
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc-EEEccCCC
Confidence 666666666666666555544 66666666666666666666666666655 443 66666664
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7e-34 Score=303.21 Aligned_cols=303 Identities=20% Similarity=0.231 Sum_probs=217.2
Q ss_pred CCCHHHHHHHHHHHHhcC-CCCCCCC----CCCCCCCc------------cceEeCCCCCCeeEEEEEecCCCCCCCCCC
Q 036865 54 RTEPKEQEAVYDIMRATG-NDWATEI----PDVCRGRW------------HGIECMPDKENVYHVVSLMFGALSDDTAFP 116 (431)
Q Consensus 54 ~~~~~e~~~l~~~~~~~~-~~w~~~~----~~~C~~~w------------~gv~C~~~~~~~~~v~~l~l~~~~~~~~~~ 116 (431)
....+|+.||++++++.+ .+|..+. .+||.|.| .||+|+.. .||+.|++.+.+
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~----~~V~~L~Ls~~~------ 334 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN----GRVTGLSLAGFG------ 334 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT----SCEEEEECTTTC------
T ss_pred ccchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCC----CCEEEEECccCC------
Confidence 355679999999999875 4787653 46633489 99999753 389999998865
Q ss_pred CCCCCCccccccccCCCCCcEEEc-CcccCCC------------------------------------------------
Q 036865 117 TCDPTRSHISRSITKLPYLRTLFF-YRCFTHN------------------------------------------------ 147 (431)
Q Consensus 117 ~~~~~~~~l~~~l~~l~~L~~L~l-~~~~~~~------------------------------------------------ 147 (431)
+.|.+|++++++++|++|+| ++|....
T Consensus 335 ----L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~ 410 (876)
T 4ecn_A 335 ----AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410 (876)
T ss_dssp ----CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHT
T ss_pred ----CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhh
Confidence 78899999999999999999 5542100
Q ss_pred --------------------------CCCCChhhhcccccccEEEeecCCCCC-----------------CCchhhc--C
Q 036865 148 --------------------------PQPIPAFLGQLGQTLQTLVLRENGNVG-----------------PIPSELG--N 182 (431)
Q Consensus 148 --------------------------~~~ip~~i~~l~~~L~~L~L~~n~~~~-----------------~~p~~~~--~ 182 (431)
...||..++.+ ++|++|+|++|.+.+ .+|..++ +
T Consensus 411 ~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 411 NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489 (876)
T ss_dssp CTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred CccccccccccccchhhceeccccCcccchhHHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc
Confidence 00178888888 789999999998887 3888877 8
Q ss_pred CCCCCEEEeecccCCccCcccccCCCCCcEEEecCCc-CCC-CCCCC---------CCCCcCEEEcCCCCCC--------
Q 036865 183 LTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNK-LTG-SIPSI---------SFPVLNVLDLNQNLLM-------- 243 (431)
Q Consensus 183 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~---------~l~~L~~L~l~~n~l~-------- 243 (431)
+++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|.. .+++|+.|++++|++.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 9999999999999888899889999999999999997 776 45532 3457888888777543
Q ss_pred ----CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCC-CcEEEeeCCcCCCCCchhcCCCCC
Q 036865 244 ----DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRN-LMILILSNMNLRGPIPESLGQLPN 318 (431)
Q Consensus 244 ----~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~ 318 (431)
+|+.|++++|.++ .+| .++.+++|+.|++++|.++ .+|. .+..+++ |+.|+|++|+++ .+|..+..++.
T Consensus 570 ~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~--~lp~-~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE--EIPE-DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS--CCCT-TSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc--cchH-HHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 6777888888877 667 7777788888888888774 5655 3666677 777888877777 66666655443
Q ss_pred --CcEeecccccCCCCcchh---hc--CCcCCcEEEccCCCCCCCCccchH-HHhhccceEEcccCCCc
Q 036865 319 --LHVLHLDENHLNGSIPNS---FK--NLKHVSELRLNNNGLTGPLPFERE-MVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 319 --L~~L~L~~N~l~~~~p~~---l~--~l~~L~~L~L~~N~l~g~ip~~~~-~l~~l~~~l~l~~Np~~ 379 (431)
|+.|++++|++.+.+|.. +. .+++|+.|++++|.++ .+|..+. .+..+. .|++++|...
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~-~L~Ls~N~L~ 710 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPIS-TIILSNNLMT 710 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCS-EEECCSCCCS
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCC-EEECCCCcCC
Confidence 777777777766554421 11 2335666666666666 4554443 233443 5666665433
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.5e-33 Score=280.46 Aligned_cols=322 Identities=18% Similarity=0.145 Sum_probs=214.7
Q ss_pred CCCCC--CccceEeCCCCC------CeeEEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCC
Q 036865 80 DVCRG--RWHGIECMPDKE------NVYHVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPI 151 (431)
Q Consensus 80 ~~C~~--~w~gv~C~~~~~------~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i 151 (431)
..|.| .|..|.|....- -..+++.|++.... +.+..+..|.++++|++|++++|.+. +..
T Consensus 5 ~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~----------l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~ 72 (477)
T 2id5_A 5 PRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNR----------IKTLNQDEFASFPHLEELELNENIVS--AVE 72 (477)
T ss_dssp TTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSC----------CCEECTTTTTTCTTCCEEECTTSCCC--EEC
T ss_pred CCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCc----------cceECHhHccCCCCCCEEECCCCccC--EeC
Confidence 34543 467888864321 11234556655432 33333456666677777777666442 222
Q ss_pred ChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC--CC
Q 036865 152 PAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI--SF 229 (431)
Q Consensus 152 p~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l 229 (431)
|..+..+ ++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..|..+.++++|++|++++|.+.+..+.. .+
T Consensus 73 ~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 151 (477)
T 2id5_A 73 PGAFNNL-FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151 (477)
T ss_dssp TTTTTTC-TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTC
T ss_pred hhhhhCC-ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCC
Confidence 4555555 56666666666655443344566666666666666666555566666666666666666665433322 45
Q ss_pred CCcCEEEcCCCCCC-----------CCcEEEccCCCCCC------------------------CCcccccCCCCcceeec
Q 036865 230 PVLNVLDLNQNLLM-----------DLILLDLSYNHLSG------------------------PFPISIRNLNSLQALIL 274 (431)
Q Consensus 230 ~~L~~L~l~~n~l~-----------~L~~L~ls~n~l~~------------------------~~p~~l~~l~~L~~L~L 274 (431)
++|++|++++|+++ +|+.|++++|.+.+ .+|.......+|++|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 56666666555432 45555555555544 33333333446666666
Q ss_pred CCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCC
Q 036865 275 KSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 275 ~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 354 (431)
++|.++ .++...+..+++|+.|+|++|.+++..+..+..+++|++|+|++|++++..|..+..+++|++|++++|+++
T Consensus 232 ~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 232 THCNLT--AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp ESSCCC--SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred cCCccc--ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 667764 566667888999999999999999777788999999999999999999888899999999999999999999
Q ss_pred CCCccchHHHhhccceEEcccCCCcccCCCCCCCCcccc-ccCCCCCCCCCCCCCCCCcccccc
Q 036865 355 GPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDS-SIDSGIGLCESGKPGSANSVQHLG 417 (431)
Q Consensus 355 g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~-~~~~~~~~C~~~~~~~~~~l~~l~ 417 (431)
+..+..+..+..++ .+++++||+.|+|...|+.++... .+......|..|.....+.+..++
T Consensus 310 ~~~~~~~~~l~~L~-~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~ 372 (477)
T 2id5_A 310 TLEESVFHSVGNLE-TLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFP 372 (477)
T ss_dssp CCCGGGBSCGGGCC-EEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSC
T ss_pred eeCHhHcCCCcccC-EEEccCCCccCccchHhHHhhhhccccCccCceeCCchHHcCCchhhCc
Confidence 76655666777776 999999999999998777766543 234457788877666666665554
No 6
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.5e-33 Score=290.84 Aligned_cols=159 Identities=22% Similarity=0.241 Sum_probs=125.1
Q ss_pred CCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCc
Q 036865 265 NLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVS 344 (431)
Q Consensus 265 ~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 344 (431)
.+++|+.|++++|.+.. .+.+..|..+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..+.++++|+
T Consensus 467 ~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred cchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 34444555555554311 22223577889999999999999988899999999999999999999988888999999999
Q ss_pred EEEccCCCCCCCCccchHHHh-hccceEEcccCCCcccCCCCCCCCcccccc----CCCCCCCCCCCCCCCCcccccccc
Q 036865 345 ELRLNNNGLTGPLPFEREMVW-KMKSKLRLHNNSGLCYNAGSDFEDGLDSSI----DSGIGLCESGKPGSANSVQHLGTL 419 (431)
Q Consensus 345 ~L~L~~N~l~g~ip~~~~~l~-~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~----~~~~~~C~~~~~~~~~~l~~l~~~ 419 (431)
+|+|++|++++..|..+..+. .+. .+++++|||.|+|...||.+|++... ......|..|.....+.+..++.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~-~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~~- 623 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLA-FLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI- 623 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCC-EEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCCC-
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCC-EEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeecc-
Confidence 999999999998888887764 454 99999999999999999999986532 23457899999999999888863
Q ss_pred ccccccc
Q 036865 420 EENITGT 426 (431)
Q Consensus 420 ~~~~~~~ 426 (431)
.++++|-
T Consensus 624 ~C~~~g~ 630 (635)
T 4g8a_A 624 TCQMTGH 630 (635)
T ss_dssp CC-----
T ss_pred CCCCCCC
Confidence 5777763
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4e-33 Score=279.63 Aligned_cols=272 Identities=24% Similarity=0.259 Sum_probs=212.1
Q ss_pred ccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchh--hcCCCCCCEEEeecccCCccCccc-
Q 036865 127 RSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSE--LGNLTRLKVLDLHKNNLNGSIPVS- 203 (431)
Q Consensus 127 ~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p~~- 203 (431)
..|.++++|++|++++|... +..|..+..+ ++|++|++++|.+.+.+|.. +.++++|++|++++|.+++..|..
T Consensus 73 ~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 149 (455)
T 3v47_A 73 NTFRGLSSLIILKLDYNQFL--QLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149 (455)
T ss_dssp TTTTTCTTCCEEECTTCTTC--EECTTTTTTC-TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG
T ss_pred ccccccccCCEEeCCCCccC--ccChhhccCc-ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc
Confidence 45677777777777776542 2346666777 67888888888777655554 777888888888888887666665
Q ss_pred ccCCCCCcEEEecCCcCCCCCCCC------------------------------------CCCCcCEEEcCCCCC-----
Q 036865 204 LGRINGLRSLDLSGNKLTGSIPSI------------------------------------SFPVLNVLDLNQNLL----- 242 (431)
Q Consensus 204 l~~l~~L~~L~L~~n~l~~~~~~~------------------------------------~l~~L~~L~l~~n~l----- 242 (431)
+.++++|++|++++|.+.+..+.. .+++|+.|++++|++
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 678888888888888877554432 125677777777755
Q ss_pred ---------------------------------------------CCCcEEEccCCCCCCCCcccccCCCCcceeecCCC
Q 036865 243 ---------------------------------------------MDLILLDLSYNHLSGPFPISIRNLNSLQALILKSN 277 (431)
Q Consensus 243 ---------------------------------------------~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n 277 (431)
.+|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred hhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence 25788888888888778888999999999999999
Q ss_pred CCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCC
Q 036865 278 SMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPL 357 (431)
Q Consensus 278 ~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 357 (431)
.++ .++...+.++++|++|++++|++++..|..+..+++|++|+|++|++++..|..+..+++|++|++++|++++..
T Consensus 310 ~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 310 EIN--KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp CCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccc--ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC
Confidence 985 454457889999999999999999888899999999999999999999888999999999999999999999755
Q ss_pred ccchHHHhhccceEEcccCCCcccCC-CCCCCCccccc--cCCCCCCCCC
Q 036865 358 PFEREMVWKMKSKLRLHNNSGLCYNA-GSDFEDGLDSS--IDSGIGLCES 404 (431)
Q Consensus 358 p~~~~~l~~l~~~l~l~~Np~~c~~~-~~~~~~~~~~~--~~~~~~~C~~ 404 (431)
+..+..+..++ .+++++|++.|+|. ..++..|+... .......|..
T Consensus 388 ~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~c~~ 436 (455)
T 3v47_A 388 DGIFDRLTSLQ-KIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 436 (455)
T ss_dssp TTTTTTCTTCC-EEECCSSCBCCCTTTTHHHHHHHHHTTTTEESCCBBTT
T ss_pred HhHhccCCccc-EEEccCCCcccCCCcchHHHHHHHhCccceeeeeeecC
Confidence 55566777776 99999999999997 44566777542 2334566754
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-32 Score=293.71 Aligned_cols=234 Identities=34% Similarity=0.518 Sum_probs=132.9
Q ss_pred CCccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccC
Q 036865 121 TRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSI 200 (431)
Q Consensus 121 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 200 (431)
+.+.+|..+.++++|++|++++|... +.+|..++.+ ++|++|++++|.+.+.+|..+..+++|++|++++|++++.+
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLS--GTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEE--SCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred cccccCHHHhcCCCCCEEECcCCccc--CcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 33455666666666666666665442 3556666666 56666666666666666666666666666666666666666
Q ss_pred cccccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCC-----------CCcEEEccCCCCCCCCcccccC--
Q 036865 201 PVSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLM-----------DLILLDLSYNHLSGPFPISIRN-- 265 (431)
Q Consensus 201 p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~-----------~L~~L~ls~n~l~~~~p~~l~~-- 265 (431)
|..+.++++|++|++++|.+++.+|.. .+++|+.|++++|++. +|++|++++|.+.|.+|..+..
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 666666666666666666666666554 4566666666666543 5666666666665555543322
Q ss_pred --------------------------------------------------------------------CCCcceeecCCC
Q 036865 266 --------------------------------------------------------------------LNSLQALILKSN 277 (431)
Q Consensus 266 --------------------------------------------------------------------l~~L~~L~L~~n 277 (431)
+++|+.|++++|
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 234444555555
Q ss_pred CCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCC
Q 036865 278 SMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPL 357 (431)
Q Consensus 278 ~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 357 (431)
++ .+.+|. .++.++.|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..+.++++|++|++++|+++|.+
T Consensus 643 ~l-~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 643 ML-SGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp CC-BSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred cc-cccCCH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 54 233443 3444555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cc
Q 036865 358 PF 359 (431)
Q Consensus 358 p~ 359 (431)
|.
T Consensus 721 P~ 722 (768)
T 3rgz_A 721 PE 722 (768)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=3.9e-32 Score=282.18 Aligned_cols=291 Identities=23% Similarity=0.239 Sum_probs=233.2
Q ss_pred CccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchh-hcCCCCCCEEEeecccCCccC
Q 036865 122 RSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSE-LGNLTRLKVLDLHKNNLNGSI 200 (431)
Q Consensus 122 ~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~ 200 (431)
...+|+.+.++++|++|++++|... ...|..+..+ ++|++|++++|.+.+.+|.. +.++++|++|++++|.+++..
T Consensus 290 l~~lp~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 290 LSELPSGLVGLSTLKKLVLSANKFE--NLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp CSCCCSSCCSCTTCCEEECTTCCCS--BGGGGCGGGC-TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred cCCCChhhcccccCCEEECccCCcC--cCchhhhhcc-CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 3466777777777777777776552 2234556666 67888888877776666543 777888888888888877544
Q ss_pred --cccccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCC------------CCCcEEEccCCCCCCCCccccc
Q 036865 201 --PVSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLL------------MDLILLDLSYNHLSGPFPISIR 264 (431)
Q Consensus 201 --p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l------------~~L~~L~ls~n~l~~~~p~~l~ 264 (431)
+..+.++++|++|++++|.+.+..+.. .+++|+.|++++|++ .+|++|++++|.+.+..|..+.
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 667788888888888888877555544 578888888888753 3789999999999988888899
Q ss_pred CCCCcceeecCCCCCCCCCCCh-hhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCC
Q 036865 265 NLNSLQALILKSNSMGPITIPN-YSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHV 343 (431)
Q Consensus 265 ~l~~L~~L~L~~n~l~~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 343 (431)
.+++|++|++++|.++...++. ..+..+++|++|++++|++++..|..++.+++|++|++++|++++..|..+.+++.|
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 9999999999999985322222 357889999999999999998889999999999999999999999999999999999
Q ss_pred cEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCccccc----cCCCCCCCCCCCCCCCCcccccc
Q 036865 344 SELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSS----IDSGIGLCESGKPGSANSVQHLG 417 (431)
Q Consensus 344 ~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~----~~~~~~~C~~~~~~~~~~l~~l~ 417 (431)
+|++++|++++..|..+..+..+. .+++++||+.|+|...++..|+... .......|..|.....+.+.+++
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~ 602 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQR-TINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVT 602 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTSS-EEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCC
T ss_pred -EEECcCCcccccCHhhcccCCCCC-EEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeee
Confidence 999999999988888888888886 9999999999999988888887642 12456789988877777776664
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.98 E-value=1.4e-31 Score=268.47 Aligned_cols=271 Identities=21% Similarity=0.169 Sum_probs=217.9
Q ss_pred CCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcE
Q 036865 133 PYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRS 212 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 212 (431)
+++++|++++|.+. +..+..+..+ ++|++|++++|.+.+..|..|.++++|++|+|++|.+++..+..+.++++|++
T Consensus 75 ~~l~~L~L~~n~i~--~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ--MIQADTFRHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCC--EECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCc--eECHHHcCCC-CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 68999999998662 2335667777 89999999999998877888999999999999999999666667899999999
Q ss_pred EEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCC-cccccCCCCcceeecCCCCCCCCCCChhhhcC
Q 036865 213 LDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPF-PISIRNLNSLQALILKSNSMGPITIPNYSFIG 291 (431)
Q Consensus 213 L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~ 291 (431)
|++++|.+. .++...+ ..+.+|++|++++|+..+.+ +..+.++++|++|++++|+++ .++ .+..
T Consensus 152 L~L~~N~l~-~~~~~~~----------~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--~~~--~~~~ 216 (452)
T 3zyi_A 152 LWLRNNPIE-SIPSYAF----------NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--DMP--NLTP 216 (452)
T ss_dssp EECCSCCCC-EECTTTT----------TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS--SCC--CCTT
T ss_pred EECCCCCcc-eeCHhHH----------hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc--ccc--cccc
Confidence 999999988 4443321 12334555556653333233 346889999999999999996 444 4778
Q ss_pred CCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceE
Q 036865 292 MRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKL 371 (431)
Q Consensus 292 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l 371 (431)
+++|++|+|++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|+|++|++++..+..+..+..+. .+
T Consensus 217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L 295 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV-EL 295 (452)
T ss_dssp CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC-EE
T ss_pred cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC-EE
Confidence 99999999999999988899999999999999999999988888999999999999999999966666666777776 99
Q ss_pred EcccCCCcccCCCCCCCCccccccC---CCCCCCCCCCCCCCCccccccccccc
Q 036865 372 RLHNNSGLCYNAGSDFEDGLDSSID---SGIGLCESGKPGSANSVQHLGTLEEN 422 (431)
Q Consensus 372 ~l~~Np~~c~~~~~~~~~~~~~~~~---~~~~~C~~~~~~~~~~l~~l~~~~~~ 422 (431)
++++|||.|+|...|+..|++.... .....|..|.....+.+.+++.....
T Consensus 296 ~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~ 349 (452)
T 3zyi_A 296 HLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQ 349 (452)
T ss_dssp ECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCC
T ss_pred EccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhc
Confidence 9999999999999888888765322 23457888887777777777655444
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.3e-32 Score=258.73 Aligned_cols=293 Identities=23% Similarity=0.243 Sum_probs=233.1
Q ss_pred CCCCCCCccceEeCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChh-hhc
Q 036865 79 PDVCRGRWHGIECMPDKENVYHVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAF-LGQ 157 (431)
Q Consensus 79 ~~~C~~~w~gv~C~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~-i~~ 157 (431)
++.|.|.|.+|.|...+ ...+|..+ .++|++|++++|.+ ..+|.. +..
T Consensus 2 P~~C~C~~~~l~c~~~~--------------------------l~~ip~~~--~~~l~~L~L~~n~l---~~i~~~~~~~ 50 (306)
T 2z66_A 2 PSRCSCSGTEIRCNSKG--------------------------LTSVPTGI--PSSATRLELESNKL---QSLPHGVFDK 50 (306)
T ss_dssp CTTCEEETTEEECCSSC--------------------------CSSCCSCC--CTTCCEEECCSSCC---CCCCTTTTTT
T ss_pred cCCCeeCCCEEEcCCCC--------------------------cccCCCCC--CCCCCEEECCCCcc---CccCHhHhhc
Confidence 35677789999996431 11233333 26899999999876 567765 466
Q ss_pred ccccccEEEeecCCCCC--CCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEE
Q 036865 158 LGQTLQTLVLRENGNVG--PIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVL 235 (431)
Q Consensus 158 l~~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 235 (431)
+ ++|++|++++|.+.. ..|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+.+..+...+
T Consensus 51 l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------ 122 (306)
T 2z66_A 51 L-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF------ 122 (306)
T ss_dssp C-TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTT------
T ss_pred c-ccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhh------
Confidence 7 899999999998763 33677888999999999999998 6788899999999999999998854331222
Q ss_pred EcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCC
Q 036865 236 DLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQ 315 (431)
Q Consensus 236 ~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 315 (431)
..+.+|++|++++|.+.+..+..+..+++|++|++++|.++...++. .+..+++|++|++++|++++..|..+..
T Consensus 123 ----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 123 ----LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp ----TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ----hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh-HHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence 12346677777788887777888999999999999999984222443 6888999999999999999888899999
Q ss_pred CCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHh-hccceEEcccCCCcccCCCCCCCCccccc
Q 036865 316 LPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVW-KMKSKLRLHNNSGLCYNAGSDFEDGLDSS 394 (431)
Q Consensus 316 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~-~l~~~l~l~~Np~~c~~~~~~~~~~~~~~ 394 (431)
+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ .+. .+++++|++.|+|...++.+|+...
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~-~L~L~~N~~~~~c~~~~~~~~l~~~ 276 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA-FLNLTQNDFACTCEHQSFLQWIKDQ 276 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC-EEECTTCCEECSGGGHHHHHHHHHT
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC-EEEccCCCeecccChHHHHHHHHhh
Confidence 99999999999999977777899999999999999999999888887774 555 9999999999999988888887653
Q ss_pred c----CCCCCCCCCCCCCCCCccccc
Q 036865 395 I----DSGIGLCESGKPGSANSVQHL 416 (431)
Q Consensus 395 ~----~~~~~~C~~~~~~~~~~l~~l 416 (431)
. ......|..|.......+..+
T Consensus 277 ~~~~~~~~~~~C~~p~~~~g~~~~~~ 302 (306)
T 2z66_A 277 RQLLVEVERMECATPSDKQGMPVLSL 302 (306)
T ss_dssp GGGBSCGGGCBEEESGGGTTCBGGGC
T ss_pred hhhhccccccccCCchhhCCceeeee
Confidence 2 345678887766666555544
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=4.4e-31 Score=263.89 Aligned_cols=277 Identities=23% Similarity=0.192 Sum_probs=218.5
Q ss_pred cccccccCCCCCcEEEcCcccCCCCCCC-ChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcc
Q 036865 124 HISRSITKLPYLRTLFFYRCFTHNPQPI-PAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPV 202 (431)
Q Consensus 124 ~l~~~l~~l~~L~~L~l~~~~~~~~~~i-p~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 202 (431)
.+|..+. ++++.|++++|.+ ..+ +..+..+ ++|++|++++|.+.+..+..|.++++|++|+|++|+++...+.
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i---~~~~~~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQI---QIIKVNSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCC---CEECTTTTSSC-SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred cCCCCCC--CCCcEEEccCCcC---CeeCHHHhhCC-CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence 3444443 6899999999876 334 3567777 8999999999998877778899999999999999999966566
Q ss_pred cccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCC-CCCCCcccccCCCCcceeecCCCCCCC
Q 036865 203 SLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNH-LSGPFPISIRNLNSLQALILKSNSMGP 281 (431)
Q Consensus 203 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~ 281 (431)
.+.++++|++|++++|.+. .++...+ ..+.+|++|++++|+ +....+..+.++++|++|++++|+++
T Consensus 131 ~~~~l~~L~~L~L~~N~i~-~~~~~~~----------~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIE-SIPSYAF----------NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp TSCSCSSCCEEECCSCCCC-EECTTTT----------TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred HhhccccCceeeCCCCccc-ccCHHHh----------hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 7999999999999999988 3443221 123355556666633 33233447889999999999999986
Q ss_pred CCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccch
Q 036865 282 ITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFER 361 (431)
Q Consensus 282 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~ 361 (431)
.++ .+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..+.++++|++|+|++|++++..+..+
T Consensus 199 -~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 199 -EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp -SCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred -ccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 555 37789999999999999998889999999999999999999998888899999999999999999997666666
Q ss_pred HHHhhccceEEcccCCCcccCCCCCCCCccccccC---CCCCCCCCCCCCCCCccccccccccc
Q 036865 362 EMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSID---SGIGLCESGKPGSANSVQHLGTLEEN 422 (431)
Q Consensus 362 ~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~~---~~~~~C~~~~~~~~~~l~~l~~~~~~ 422 (431)
..+..++ .+++++|||.|+|...|+..|++.... .....|..|.....+.+..++..+..
T Consensus 276 ~~l~~L~-~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~ 338 (440)
T 3zyj_A 276 TPLHHLE-RIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFT 338 (440)
T ss_dssp SSCTTCC-EEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSC
T ss_pred ccccCCC-EEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhcc
Confidence 6677776 999999999999999998888765322 23467888888888877777654433
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=5.5e-31 Score=252.92 Aligned_cols=274 Identities=19% Similarity=0.236 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHhc---CC----CCC---CCCCCCCCCCccceEeCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCcccc
Q 036865 57 PKEQEAVYDIMRAT---GN----DWA---TEIPDVCRGRWHGIECMPDKENVYHVVSLMFGALSDDTAFPTCDPTRSHIS 126 (431)
Q Consensus 57 ~~e~~~l~~~~~~~---~~----~w~---~~~~~~C~~~w~gv~C~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~ 126 (431)
.+|.+|+..++... .. .|. ....++| .|.|+.|....
T Consensus 26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~--~~~g~~~~~~~------------------------------- 72 (328)
T 4fcg_A 26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE--TRTGRALKATA------------------------------- 72 (328)
T ss_dssp CCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC--CSHHHHHHHHH-------------------------------
T ss_pred chHHHHHHHHHHhccCCchhhhhhhccccccccccc--ccCCcchhhhH-------------------------------
Confidence 45788899888744 22 352 2245677 79999994210
Q ss_pred ccc--cCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccc
Q 036865 127 RSI--TKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSL 204 (431)
Q Consensus 127 ~~l--~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 204 (431)
..+ ...+++++|++++|.. ..+|..++.+ ++|++|++++|.+. .+|..++++++|++|++++|.++ .+|..+
T Consensus 73 ~~l~~~~~~~l~~L~L~~n~l---~~lp~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l 146 (328)
T 4fcg_A 73 DLLEDATQPGRVALELRSVPL---PQFPDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI 146 (328)
T ss_dssp HHHHHHTSTTCCEEEEESSCC---SSCCSCGGGG-TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG
T ss_pred HHHhcccccceeEEEccCCCc---hhcChhhhhC-CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH
Confidence 111 2356788888888766 5788888887 78999999999887 78888889999999999999988 788889
Q ss_pred cCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC--CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCC
Q 036865 205 GRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ--NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPI 282 (431)
Q Consensus 205 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~--n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 282 (431)
.++++|++|++++|.+.+.+|... ....+.. ..+.+|++|++++|.++ .+|..+.++++|++|++++|.++
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~----~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-- 219 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPL----ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-- 219 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCS----EEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC--
T ss_pred hcCcCCCEEECCCCCCccccChhH----hhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC--
Confidence 999999999999988877777641 0000000 13557788888888888 78888999999999999999986
Q ss_pred CCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchH
Q 036865 283 TIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFERE 362 (431)
Q Consensus 283 ~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~ 362 (431)
.++. .+..+++|++|++++|++.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|++.+.+|..+.
T Consensus 220 ~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 ALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 5665 588899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccceEEcccCCC
Q 036865 363 MVWKMKSKLRLHNNSG 378 (431)
Q Consensus 363 ~l~~l~~~l~l~~Np~ 378 (431)
.+..+. .+++..|..
T Consensus 299 ~L~~L~-~l~l~~~~~ 313 (328)
T 4fcg_A 299 QLPANC-IILVPPHLQ 313 (328)
T ss_dssp GSCTTC-EEECCGGGS
T ss_pred hccCce-EEeCCHHHH
Confidence 988876 888887643
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=6e-30 Score=269.35 Aligned_cols=304 Identities=22% Similarity=0.209 Sum_probs=218.3
Q ss_pred CCccccccccCCCCCcEEEcCcccCCCCCCCChh-hhcc-cccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCc
Q 036865 121 TRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAF-LGQL-GQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNG 198 (431)
Q Consensus 121 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~-i~~l-~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~ 198 (431)
+.+..+..+.++++|++|++++|.... ..++.. +..+ .++|++|++++|.+.+..|..|..+++|++|++++|.+.+
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~-~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSL-RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCC-CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhh-hhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 334445567788888888888774321 222221 1111 1478999999999888888889999999999999999987
Q ss_pred cCc-ccccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCC-------------CCCcEEEccCCCCCCCCccc
Q 036865 199 SIP-VSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLL-------------MDLILLDLSYNHLSGPFPIS 262 (431)
Q Consensus 199 ~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l-------------~~L~~L~ls~n~l~~~~p~~ 262 (431)
.+| ..+.++++|++|++++|.+.+..+.. .+++|+.|++++|.+ .+|+.|++++|++++..+..
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 666 67899999999999999987544443 688999999998864 37999999999999877778
Q ss_pred ccCCCCcceeecCCCCCCCC---CC---ChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchh
Q 036865 263 IRNLNSLQALILKSNSMGPI---TI---PNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNS 336 (431)
Q Consensus 263 l~~l~~L~~L~L~~n~l~~~---~i---~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 336 (431)
+.++++|++|++++|.++.. .+ +...+.++++|++|++++|+++...+..+..+++|+.|+|++|++++..+..
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 579 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH
Confidence 99999999999999998521 11 1124788999999999999999544457899999999999999999766667
Q ss_pred hcCCcCCcEEEccCCCCCCCCccchH-HHhhccceEEcccCCCcccCCC-CCCCCcccccc---C--CCCCCCCCCCCCC
Q 036865 337 FKNLKHVSELRLNNNGLTGPLPFERE-MVWKMKSKLRLHNNSGLCYNAG-SDFEDGLDSSI---D--SGIGLCESGKPGS 409 (431)
Q Consensus 337 l~~l~~L~~L~L~~N~l~g~ip~~~~-~l~~l~~~l~l~~Np~~c~~~~-~~~~~~~~~~~---~--~~~~~C~~~~~~~ 409 (431)
+..+++|+.|++++|++++..|..+. .+..+. .+++++|||.|+|.. .||.+|+.... + .....|..|....
T Consensus 580 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~-~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~ 658 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT-ELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYH 658 (680)
T ss_dssp TTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS-EEECTTCCCCBCCCCCSSEECCSSCC--------------------
T ss_pred hCCCCCCCEEECCCCcCCccChhHhcccccccC-EEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCchHHC
Confidence 89999999999999999987776666 566666 999999999999996 89999986531 1 2356899998888
Q ss_pred CCccccccccccccccc
Q 036865 410 ANSVQHLGTLEENITGT 426 (431)
Q Consensus 410 ~~~l~~l~~~~~~~~~~ 426 (431)
.+.+..++..+......
T Consensus 659 g~~l~~~~~~~~~~~~~ 675 (680)
T 1ziw_A 659 GFPVRLFDTSSCKDSAH 675 (680)
T ss_dssp -----------------
T ss_pred CCcccccChhhcCCCcc
Confidence 88898888877665443
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1e-30 Score=271.47 Aligned_cols=286 Identities=24% Similarity=0.219 Sum_probs=218.8
Q ss_pred cccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCcc--Cc
Q 036865 124 HISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGS--IP 201 (431)
Q Consensus 124 ~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~p 201 (431)
.+| .+..+++|++|++++|.. +.+|. + .+ ++|++|++++|...+.+ .+..+++|++|++++|.+++. +|
T Consensus 299 ~l~-~l~~~~~L~~L~l~~n~l---~~lp~-~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 299 YLE-DVPKHFKWQSLSIIRCQL---KQFPT-L-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp CCC-CCCTTCCCSEEEEESCCC---SSCCC-C-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECC
T ss_pred hhh-hccccccCCEEEcccccC---ccccc-C-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchh
Confidence 344 566777777777777765 56663 3 55 67888888877544433 566888888899988888754 37
Q ss_pred ccccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCC------------CCCCcEEEccCCCCCCCCcccccCCC
Q 036865 202 VSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNL------------LMDLILLDLSYNHLSGPFPISIRNLN 267 (431)
Q Consensus 202 ~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~------------l~~L~~L~ls~n~l~~~~p~~l~~l~ 267 (431)
..+..+++|++|++++|.+.+ ++.. .+++|+.|++++|+ +.+|++|++++|.+.+..|..+.+++
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 788889999999999998874 4433 68899999998874 34899999999999988899999999
Q ss_pred CcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEE
Q 036865 268 SLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELR 347 (431)
Q Consensus 268 ~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 347 (431)
+|++|++++|.++ +.+.+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 449 ~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 449 SLNTLKMAGNSFK-DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp TCCEEECTTCEEG-GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred CCCEEECCCCcCC-CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 9999999999984 322233688899999999999999988899999999999999999999988899999999999999
Q ss_pred ccCCCCCCCCccchHHHhh-ccceEEcccCCCcccCCCCCCCCcccccc----CCCCCCCCCCCCCCCCccccccccccc
Q 036865 348 LNNNGLTGPLPFEREMVWK-MKSKLRLHNNSGLCYNAGSDFEDGLDSSI----DSGIGLCESGKPGSANSVQHLGTLEEN 422 (431)
Q Consensus 348 L~~N~l~g~ip~~~~~l~~-l~~~l~l~~Np~~c~~~~~~~~~~~~~~~----~~~~~~C~~~~~~~~~~l~~l~~~~~~ 422 (431)
+++|+++ .+|..+..+++ +. .+++++||+.|+|...|+.+|++... ......|..|.....+.+.+++..+.+
T Consensus 528 l~~N~l~-~~p~~~~~l~~~L~-~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~c~ 605 (606)
T 3vq2_A 528 CSFNRIE-TSKGILQHFPKSLA-FFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNSTCY 605 (606)
T ss_dssp CTTSCCC-CEESCGGGSCTTCC-EEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC-------------------
T ss_pred CCCCcCc-ccCHhHhhhcccCc-EEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCChHhCCCEeeecccccCC
Confidence 9999999 78888777764 54 99999999999999988888886632 235678998888888888887766543
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=9.9e-30 Score=250.00 Aligned_cols=264 Identities=23% Similarity=0.296 Sum_probs=173.1
Q ss_pred ccccCCCCCcEEEcCcccCCCCCCC-ChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCccccc
Q 036865 127 RSITKLPYLRTLFFYRCFTHNPQPI-PAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLG 205 (431)
Q Consensus 127 ~~l~~l~~L~~L~l~~~~~~~~~~i-p~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 205 (431)
..+.++++|++|++++|.+ ..+ |..+..+ ++|++|++++|.+....+..|.++++|++|++++|.+++..|..+.
T Consensus 87 ~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFNAI---RYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162 (390)
T ss_dssp TTTTTCTTCCEEECCSSCC---CCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred hhccCCCCcCEEECCCCCC---CcCCHHHhcCC-CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence 3556666666666666544 223 3334555 5666666666665533223346666666666666666655555566
Q ss_pred CCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC---------------------------CCcEEEccCCCCCCC
Q 036865 206 RINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM---------------------------DLILLDLSYNHLSGP 258 (431)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~---------------------------~L~~L~ls~n~l~~~ 258 (431)
++++|++|++++|.+++ ++...+++|+.|++++|.+. +|+.|++++|.+++.
T Consensus 163 ~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 241 (390)
T ss_dssp SCTTCCEEECCSSCCSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC
T ss_pred CCCCCCEEECCCCcCCc-cccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc
Confidence 66666666666666652 22223444444444444332 466666666666642
Q ss_pred CcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhc
Q 036865 259 FPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFK 338 (431)
Q Consensus 259 ~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 338 (431)
..+..+++|++|++++|.++ .++...+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+.
T Consensus 242 --~~l~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 315 (390)
T 3o6n_A 242 --AWLLNYPGLVEVDLSYNELE--KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP 315 (390)
T ss_dssp --GGGGGCTTCSEEECCSSCCC--EEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred --HHHcCCCCccEEECCCCcCC--CcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence 46777888888888888874 333346778888888888888887 45666677888888888888888 5676777
Q ss_pred CCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCccccccCCCCCCCCCC
Q 036865 339 NLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSIDSGIGLCESG 405 (431)
Q Consensus 339 ~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~~~~~~~C~~~ 405 (431)
.+++|++|++++|++++ +| +..+..++ .+++++|++.|+|...++..+....+......|..+
T Consensus 316 ~l~~L~~L~L~~N~i~~-~~--~~~~~~L~-~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIVT-LK--LSTHHTLK-NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp HHTTCSEEECCSSCCCC-CC--CCTTCCCS-EEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCTT
T ss_pred ccCcCCEEECCCCccce-eC--chhhccCC-EEEcCCCCccchhHHHHHHHHHhhcccccCceeccc
Confidence 88888888888888874 33 34455665 899999999999987666666655555566677654
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=258.87 Aligned_cols=157 Identities=25% Similarity=0.358 Sum_probs=102.8
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCC-------------------------CCCCChhhhcCCCCCcEE
Q 036865 244 DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMG-------------------------PITIPNYSFIGMRNLMIL 298 (431)
Q Consensus 244 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-------------------------~~~i~~~~~~~l~~L~~L 298 (431)
+|++|++++|.+++..|..+..+++|++|++++|+++ ...++...+..+++|++|
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 4555555555555545555555555555555555553 111333233444445555
Q ss_pred EeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccc-hHHHhhccceEEcccCC
Q 036865 299 ILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFE-REMVWKMKSKLRLHNNS 377 (431)
Q Consensus 299 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~-~~~l~~l~~~l~l~~Np 377 (431)
++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+..+. .+++++||
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~-~L~l~~N~ 479 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ-KIWLHTNP 479 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCC-EEECCSSC
T ss_pred ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCccc-EEECcCCC
Confidence 5555554444443332 57777888888777 67777779999999999999999 57765 66677776 99999999
Q ss_pred CcccCCCCCC-CCccccc--cCCCCCCCCCC
Q 036865 378 GLCYNAGSDF-EDGLDSS--IDSGIGLCESG 405 (431)
Q Consensus 378 ~~c~~~~~~~-~~~~~~~--~~~~~~~C~~~ 405 (431)
+.|+|...|+ ..|+... .......|..|
T Consensus 480 ~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p 510 (520)
T 2z7x_B 480 WDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 510 (520)
T ss_dssp BCCCHHHHHHHHHHHHHTTTTEESCCBBTTT
T ss_pred CcccCCchHHHHHHHHhccccCCCCCCcCCc
Confidence 9999998888 7787553 23456788776
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.6e-29 Score=259.47 Aligned_cols=264 Identities=23% Similarity=0.290 Sum_probs=176.1
Q ss_pred cccccCCCCCcEEEcCcccCCCCCCCC-hhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccc
Q 036865 126 SRSITKLPYLRTLFFYRCFTHNPQPIP-AFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSL 204 (431)
Q Consensus 126 ~~~l~~l~~L~~L~l~~~~~~~~~~ip-~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 204 (431)
+..|..+++|++|++++|.+ ..+| ..++.+ ++|++|++++|.+.+..+..|+++++|++|+|++|.+++..|..+
T Consensus 92 ~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 92 TYAFAYAHTIQKLYMGFNAI---RYLPPHVFQNV-PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCC---CCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred hHHhcCCCCCCEEECCCCcC---CCCCHHHHcCC-CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 34566666666666666644 2233 334555 566666666666654333345666666666666666665555566
Q ss_pred cCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC---------------------------CCcEEEccCCCCCC
Q 036865 205 GRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM---------------------------DLILLDLSYNHLSG 257 (431)
Q Consensus 205 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~---------------------------~L~~L~ls~n~l~~ 257 (431)
.++++|++|++++|.+++ ++...+++|+.|++++|.+. +|+.|++++|.+++
T Consensus 168 ~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 246 (597)
T ss_dssp TTCTTCCEEECTTSCCSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC
T ss_pred hcCCcCcEEECcCCCCCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC
Confidence 666666666666666653 23334444444444444332 46667777777764
Q ss_pred CCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhh
Q 036865 258 PFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSF 337 (431)
Q Consensus 258 ~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 337 (431)
+..+..+++|+.|++++|.++ .++...|..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+
T Consensus 247 --~~~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~ 320 (597)
T 3oja_B 247 --TAWLLNYPGLVEVDLSYNELE--KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQ 320 (597)
T ss_dssp --CGGGGGCTTCSEEECCSSCCC--EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred --ChhhccCCCCCEEECCCCccC--CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCccc
Confidence 356778888888888888874 3333467788888888888888884 5666777888888888888888 677778
Q ss_pred cCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCccccccCCCCCCCCC
Q 036865 338 KNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSIDSGIGLCES 404 (431)
Q Consensus 338 ~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~~~~~~~C~~ 404 (431)
..+++|+.|++++|.+++. | +..+..+. .|++++||+.|+|...++..+....+......|..
T Consensus 321 ~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~-~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIVTL-K--LSTHHTLK-NLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp HHHTTCSEEECCSSCCCCC-C--CCTTCCCS-EEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCT
T ss_pred ccCCCCCEEECCCCCCCCc-C--hhhcCCCC-EEEeeCCCCCChhHHHHHHHHhhhccccccccCCc
Confidence 8888899999999988854 3 33455565 89999999999997666665555444445556654
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.3e-29 Score=236.69 Aligned_cols=247 Identities=23% Similarity=0.244 Sum_probs=199.1
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCc-CCCCCCCCCCCCcCEEEcC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNK-LTGSIPSISFPVLNVLDLN 238 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~ 238 (431)
++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.++++|++|++++|. +....+.. +.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~-~~-------- 102 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-FH-------- 102 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT-TT--------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH-hc--------
Confidence 578888888888776666678888889999998888887768888888889999998887 55332322 11
Q ss_pred CCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCC
Q 036865 239 QNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPN 318 (431)
Q Consensus 239 ~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 318 (431)
.+.+|++|++++|.+.+..+..+.++++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++
T Consensus 103 --~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 103 --GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ--ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178 (285)
T ss_dssp --TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred --CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc--ccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence 2345666777777777667778889999999999999985 566556888999999999999999666667889999
Q ss_pred CcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCccccc-cCC
Q 036865 319 LHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSS-IDS 397 (431)
Q Consensus 319 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~-~~~ 397 (431)
|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+..++ .+++++|++.|+|...++.+|++.. ...
T Consensus 179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~N~~~c~~~~~~~~~~l~~~~~~~ 257 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ-YLRLNDNPWVCDCRARPLWAWLQKFRGSS 257 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC-EEECCSSCEECSGGGHHHHHHHHHCCSEE
T ss_pred cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC-EEeccCCCccCCCCcHHHHHHHHhccccc
Confidence 99999999999988899999999999999999999976656677777776 9999999999999988888887663 234
Q ss_pred CCCCCCCCCCCCCCccccccccc
Q 036865 398 GIGLCESGKPGSANSVQHLGTLE 420 (431)
Q Consensus 398 ~~~~C~~~~~~~~~~l~~l~~~~ 420 (431)
....|..|.....+.+.++...+
T Consensus 258 ~~~~c~~p~~l~g~~l~~l~~~~ 280 (285)
T 1ozn_A 258 SEVPCSLPQRLAGRDLKRLAAND 280 (285)
T ss_dssp CCCBEEESGGGTTCBGGGSCGGG
T ss_pred CccccCCchHhCCcChhhcCHHH
Confidence 57778888887778887777543
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=6.7e-29 Score=255.71 Aligned_cols=144 Identities=24% Similarity=0.364 Sum_probs=94.8
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCC-------------------------CCCChhhhcCCCCCcEE
Q 036865 244 DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGP-------------------------ITIPNYSFIGMRNLMIL 298 (431)
Q Consensus 244 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------------------------~~i~~~~~~~l~~L~~L 298 (431)
+|++|++++|.+++..|..+.++++|++|++++|+++. ..++...+..+++|++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 45555555555555555555555555555555555531 11333334444444444
Q ss_pred EeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccc-hHHHhhccceEEcccCC
Q 036865 299 ILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFE-REMVWKMKSKLRLHNNS 377 (431)
Q Consensus 299 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~-~~~l~~l~~~l~l~~Np 377 (431)
++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+..++ .+++++||
T Consensus 434 ~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~-~L~l~~N~ 508 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQ-YIWLHDNP 508 (562)
T ss_dssp ECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCC-CEECCSCC
T ss_pred ECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCC-EEEecCCC
Confidence 4444444444333322 57888888888887 67777779999999999999999 67766 77777776 89999999
Q ss_pred CcccCCCCCCCC-ccc
Q 036865 378 GLCYNAGSDFED-GLD 392 (431)
Q Consensus 378 ~~c~~~~~~~~~-~~~ 392 (431)
|.|+|...|+.+ |..
T Consensus 509 ~~c~c~~~~~~~~~~~ 524 (562)
T 3a79_B 509 WDCTCPGIRYLSEWIN 524 (562)
T ss_dssp BCCCHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHH
Confidence 999999877755 643
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.8e-28 Score=255.91 Aligned_cols=248 Identities=21% Similarity=0.284 Sum_probs=212.1
Q ss_pred CCccccccccCCCCCcEEEcCccc-CCCCC-CCChhhhcc-----cccccEEEeecCCCCCCCch--hhcCCCCCCEEEe
Q 036865 121 TRSHISRSITKLPYLRTLFFYRCF-THNPQ-PIPAFLGQL-----GQTLQTLVLRENGNVGPIPS--ELGNLTRLKVLDL 191 (431)
Q Consensus 121 ~~~~l~~~l~~l~~L~~L~l~~~~-~~~~~-~ip~~i~~l-----~~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L 191 (431)
+.+.+|..++++++|++|++++|. .. + .+|..++.+ .++|++|++++|.+. .+|. .++++++|++|++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~--~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGIS--GEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSC--HHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCc--cccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence 678889999999999999999985 42 4 688888764 268999999999988 8888 8999999999999
Q ss_pred ecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC--CCCC-cCEEEcCCCCCC------------CCcEEEccCCCCC
Q 036865 192 HKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI--SFPV-LNVLDLNQNLLM------------DLILLDLSYNHLS 256 (431)
Q Consensus 192 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~-L~~L~l~~n~l~------------~L~~L~ls~n~l~ 256 (431)
++|.++|.+| .++++++|++|++++|.++ .+|.. .+++ |+.|++++|.++ +|++|++++|.+.
T Consensus 338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp CSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred cCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC
Confidence 9999998899 8999999999999999988 66665 6777 999999998754 5889999999999
Q ss_pred CCCccccc-------CCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCC--------CCCCcE
Q 036865 257 GPFPISIR-------NLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQ--------LPNLHV 321 (431)
Q Consensus 257 ~~~p~~l~-------~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~ 321 (431)
+..|..+. .+++|++|++++|.++ .++...+..+++|++|+|++|+++ .+|..+.. +++|++
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~ 492 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQIS--KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTS 492 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCC--SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCE
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccC--cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccE
Confidence 98888887 7889999999999986 778777788999999999999999 66654332 238999
Q ss_pred eecccccCCCCcchhhc--CCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCc
Q 036865 322 LHLDENHLNGSIPNSFK--NLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 322 L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+..++ .|++++|...
T Consensus 493 L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~-~L~Ls~N~~l 549 (636)
T 4eco_A 493 IDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK-GFGIRNQRDA 549 (636)
T ss_dssp EECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC-EEECCSCBCT
T ss_pred EECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC-EEECCCCccc
Confidence 999999999 7888876 89999999999999997 898888888886 9999877633
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.2e-28 Score=235.02 Aligned_cols=230 Identities=28% Similarity=0.390 Sum_probs=201.7
Q ss_pred CCCcEEEcCcccCCCCCCCChhhhcccccccEEEeec-CCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCc
Q 036865 133 PYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRE-NGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLR 211 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 211 (431)
.+++.|+++++.......+|..+..+ ++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 57999999998764212789999999 8999999995 889999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCC-CcceeecCCCCCCCCCCChhhhc
Q 036865 212 SLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLN-SLQALILKSNSMGPITIPNYSFI 290 (431)
Q Consensus 212 ~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~i~~~~~~ 290 (431)
+|++++|.+.+.+|... ..+.+|++|++++|.+++.+|..+..++ +|++|++++|.+ .+.++. .+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~-----------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l-~~~~~~-~~~ 195 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSI-----------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL-TGKIPP-TFA 195 (313)
T ss_dssp EEECCSSEEESCCCGGG-----------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE-EEECCG-GGG
T ss_pred EEeCCCCccCCcCChHH-----------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee-eccCCh-HHh
Confidence 99999999987776531 1244666777788888888999999998 999999999998 345554 577
Q ss_pred CCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccce
Q 036865 291 GMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSK 370 (431)
Q Consensus 291 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~ 370 (431)
.++ |++|++++|++++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+..++ .
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~ 272 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH-S 272 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC-E
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCC-E
Confidence 776 99999999999999999999999999999999999977666 88899999999999999999999998888887 9
Q ss_pred EEcccCCCc
Q 036865 371 LRLHNNSGL 379 (431)
Q Consensus 371 l~l~~Np~~ 379 (431)
+++++|+..
T Consensus 273 L~Ls~N~l~ 281 (313)
T 1ogq_A 273 LNVSFNNLC 281 (313)
T ss_dssp EECCSSEEE
T ss_pred EECcCCccc
Confidence 999999754
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4e-29 Score=242.43 Aligned_cols=264 Identities=19% Similarity=0.203 Sum_probs=192.1
Q ss_pred CCCcEEEcCcccCCCCCCCCh-hhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCc
Q 036865 133 PYLRTLFFYRCFTHNPQPIPA-FLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLR 211 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~ip~-~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 211 (431)
++|++|++++|.+ ..++. .+..+ ++|++|++++|.+.+..|..|.++++|++|++++|++++..+..+.++++|+
T Consensus 52 ~~L~~L~l~~n~i---~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRI---TYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCC---CEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccCcEEECCCCcC---cccCHHHhccC-CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 3677777776654 33443 45555 6677777777766655556666777777777777777643333366677777
Q ss_pred EEEecCCcCCCCCCC--C--CCCCcCEEEcCCCC------------CCCCcEEEccCCCCCCCCcccccCCCCcceeecC
Q 036865 212 SLDLSGNKLTGSIPS--I--SFPVLNVLDLNQNL------------LMDLILLDLSYNHLSGPFPISIRNLNSLQALILK 275 (431)
Q Consensus 212 ~L~L~~n~l~~~~~~--~--~l~~L~~L~l~~n~------------l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~ 275 (431)
+|++++|.+. .++. . .+++|+.|++++|. +++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 128 ~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 128 FLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 7777777666 3333 1 56667777766652 2378889999999998888999999999999999
Q ss_pred CCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhc---CCCCCCcEeecccccCCC----CcchhhcCCcCCcEEEc
Q 036865 276 SNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESL---GQLPNLHVLHLDENHLNG----SIPNSFKNLKHVSELRL 348 (431)
Q Consensus 276 ~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L 348 (431)
+|.++ .++...+..+++|++|++++|++++..+..+ .....++.++++++.+.+ .+|..+..+++|++|++
T Consensus 207 ~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 207 MKQHI--LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp CSCST--THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEEC
T ss_pred CCccc--cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEEC
Confidence 99985 5666556678999999999999997554433 245678899999998875 47788999999999999
Q ss_pred cCCCCCCCCccch-HHHhhccceEEcccCCCcccCC-CCCCCCcccccc--CCCCCCCCCC
Q 036865 349 NNNGLTGPLPFER-EMVWKMKSKLRLHNNSGLCYNA-GSDFEDGLDSSI--DSGIGLCESG 405 (431)
Q Consensus 349 ~~N~l~g~ip~~~-~~l~~l~~~l~l~~Np~~c~~~-~~~~~~~~~~~~--~~~~~~C~~~ 405 (431)
++|+++ .+|..+ ..+..++ .+++++|++.|+|. ..++..|+.... ......|..|
T Consensus 285 s~N~l~-~i~~~~~~~l~~L~-~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~p 343 (353)
T 2z80_A 285 SRNQLK-SVPDGIFDRLTSLQ-KIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 343 (353)
T ss_dssp CSSCCC-CCCTTTTTTCTTCC-EEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTT
T ss_pred CCCCCC-ccCHHHHhcCCCCC-EEEeeCCCccCcCCCcHHHHHHHHhccccCCCCcccCCC
Confidence 999999 677764 6677776 99999999999996 556666765522 2346788765
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.2e-27 Score=227.87 Aligned_cols=236 Identities=25% Similarity=0.295 Sum_probs=160.3
Q ss_pred CCCcEEEcCcccCCCCCCCCh-hhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCc
Q 036865 133 PYLRTLFFYRCFTHNPQPIPA-FLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLR 211 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~ip~-~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 211 (431)
+.|++|++++|.+ ..++. .+..+ ++|++|++++|.+.+..|..|+++++|++|++++|.++ .+|..+. ++|+
T Consensus 52 ~~l~~L~L~~n~i---~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKI---TEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEEECCSSCC---CCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCC
T ss_pred CCCeEEECCCCcC---CEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--cccc
Confidence 4666777766654 33433 45555 66777777777666665666777777777777777766 5555443 5677
Q ss_pred EEEecCCcCCCCCCC--CCCCCcCEEEcCCCCC-------------CCCcEEEccCCCCCCCCcccccCCCCcceeecCC
Q 036865 212 SLDLSGNKLTGSIPS--ISFPVLNVLDLNQNLL-------------MDLILLDLSYNHLSGPFPISIRNLNSLQALILKS 276 (431)
Q Consensus 212 ~L~L~~n~l~~~~~~--~~l~~L~~L~l~~n~l-------------~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~ 276 (431)
+|++++|.+.+..+. ..+++|+.|++++|.+ .+|++|++++|.++ .+|..+. ++|++|++++
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDG 201 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTT
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCC
Confidence 777777766633332 2566677777766654 36778888888777 4554443 7888888888
Q ss_pred CCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCC
Q 036865 277 NSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGP 356 (431)
Q Consensus 277 n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 356 (431)
|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++.
T Consensus 202 n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 202 NKIT--KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp SCCC--EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred CcCC--ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence 8874 344446777888888888888888766667778888888888888888 7777788888888888888888854
Q ss_pred CccchHHH------hhccceEEcccCCCcccC
Q 036865 357 LPFEREMV------WKMKSKLRLHNNSGLCYN 382 (431)
Q Consensus 357 ip~~~~~l------~~l~~~l~l~~Np~~c~~ 382 (431)
.+..+... ..+ ..+++++||+.+.+
T Consensus 279 ~~~~f~~~~~~~~~~~l-~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 279 GSNDFCPPGYNTKKASY-SGVSLFSNPVQYWE 309 (330)
T ss_dssp CTTSSSCSSCCTTSCCC-SEEECCSSSSCGGG
T ss_pred ChhhcCCcccccccccc-cceEeecCcccccc
Confidence 44443221 222 37888888876543
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=262.76 Aligned_cols=287 Identities=24% Similarity=0.202 Sum_probs=201.1
Q ss_pred CCccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccC
Q 036865 121 TRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSI 200 (431)
Q Consensus 121 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 200 (431)
..+..+..+..+++|++|++++|.+. +..|..+..+ ++|++|++++|.+.+..|..|.++++|++|++++|.+.+..
T Consensus 278 l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 354 (844)
T 3j0a_A 278 VFSLNSRVFETLKDLKVLNLAYNKIN--KIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354 (844)
T ss_dssp CCEECSCCSSSCCCCCEEEEESCCCC--EECTTTTTTC-SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred ccccChhhhhcCCCCCEEECCCCcCC--CCChHHhcCC-CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC
Confidence 33445667788888888888887652 3335566666 78888888888887777888888888888888888888666
Q ss_pred cccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC--------------------------------CCcEE
Q 036865 201 PVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM--------------------------------DLILL 248 (431)
Q Consensus 201 p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~--------------------------------~L~~L 248 (431)
+..+.++++|++|++++|.+++ ++. +++|+.|++++|++. +|+.|
T Consensus 355 ~~~~~~l~~L~~L~Ls~N~l~~-i~~--~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L 431 (844)
T 3j0a_A 355 DQTFKFLEKLQTLDLRDNALTT-IHF--IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431 (844)
T ss_dssp SSCSCSCCCCCEEEEETCCSCC-CSS--CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEE
T ss_pred hhhhcCCCCCCEEECCCCCCCc-ccC--CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCcccee
Confidence 6678888888888888888773 222 445555555554432 45555
Q ss_pred EccCCCCCCCCcc-cccCCCCcceeecCCCCCCCC---CCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeec
Q 036865 249 DLSYNHLSGPFPI-SIRNLNSLQALILKSNSMGPI---TIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHL 324 (431)
Q Consensus 249 ~ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~---~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 324 (431)
++++|++++..+. .+..+++|+.|++++|.++.. ......|.++++|+.|+|++|++++..|..+..+++|+.|+|
T Consensus 432 ~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 511 (844)
T 3j0a_A 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511 (844)
T ss_dssp EEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEE
T ss_pred eCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeEC
Confidence 5555555533221 233455666666666655311 111234667788888888888888777777888888888888
Q ss_pred ccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCcccccc-----CCCC
Q 036865 325 DENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSI-----DSGI 399 (431)
Q Consensus 325 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~-----~~~~ 399 (431)
++|++++..+..+. ++|+.|++++|++++..|..+. .+. .+++++|||.|+|...+|..|+.... ....
T Consensus 512 s~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~-~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~ 585 (844)
T 3j0a_A 512 NSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLS-VLDITHNKFICECELSTFINWLNHTNVTIAGPPAD 585 (844)
T ss_dssp ESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCC-EEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGG
T ss_pred CCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcC-EEEecCCCcccccccHHHHHHHHhcCccccccccc
Confidence 88888866555554 7888899999988888886653 444 89999999999999999988875421 1245
Q ss_pred CCCCCCCCCCCCcccccccc
Q 036865 400 GLCESGKPGSANSVQHLGTL 419 (431)
Q Consensus 400 ~~C~~~~~~~~~~l~~l~~~ 419 (431)
..|..|.....+.+..++..
T Consensus 586 ~~C~~p~~~~g~~l~~~~~~ 605 (844)
T 3j0a_A 586 IYCVYPDSFSGVSLFSLSTE 605 (844)
T ss_dssp CCCSSCSSSCSCCTTTCCCC
T ss_pred CccCCchhhCCCccccCccc
Confidence 68988777777666665543
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.2e-27 Score=229.98 Aligned_cols=237 Identities=25% Similarity=0.291 Sum_probs=174.5
Q ss_pred CCCcEEEcCcccCCCCCCC-ChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCc
Q 036865 133 PYLRTLFFYRCFTHNPQPI-PAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLR 211 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~i-p~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 211 (431)
++|++|++++|.+ ..+ |..+..+ ++|++|++++|.+.+..|..|+++++|++|++++|.++ .+|..+. ++|+
T Consensus 54 ~~l~~L~l~~n~i---~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNNDI---SELRKDDFKGL-QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLV 126 (332)
T ss_dssp TTCCEEECCSSCC---CEECTTTTTTC-TTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCC
T ss_pred CCCeEEECCCCcC---CccCHhHhhCC-CCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCC
Confidence 5777788877755 333 3456666 67888888887777666777777888888888888777 5666554 6788
Q ss_pred EEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCC------------CCcEEEccCCCCCCCCcccccCCCCcceeecCCC
Q 036865 212 SLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLM------------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSN 277 (431)
Q Consensus 212 ~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~------------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n 277 (431)
+|++++|.+.+..+.. .+++|+.|++++|.++ +|++|++++|.+++ +|..+. ++|++|++++|
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n 203 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP--ETLNELHLDHN 203 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSS
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc--CCCCEEECCCC
Confidence 8888888777433322 5777888888777663 67888888888884 555443 68888999999
Q ss_pred CCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCC
Q 036865 278 SMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPL 357 (431)
Q Consensus 278 ~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 357 (431)
.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..
T Consensus 204 ~i~--~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 204 KIQ--AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp CCC--CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred cCC--ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence 885 444446778888999999999998777777888889999999999888 77888888899999999999888654
Q ss_pred ccchHHH------hhccceEEcccCCCcccCC
Q 036865 358 PFEREMV------WKMKSKLRLHNNSGLCYNA 383 (431)
Q Consensus 358 p~~~~~l------~~l~~~l~l~~Np~~c~~~ 383 (431)
+..+... ..+ ..+++++||+.+.+.
T Consensus 281 ~~~~~~~~~~~~~~~l-~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYY-NGISLFNNPVPYWEV 311 (332)
T ss_dssp TTSSSCSSCCSSSCCB-SEEECCSSSSCGGGS
T ss_pred hhHccccccccccccc-cceEeecCccccccc
Confidence 4444332 223 378889998775443
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.9e-27 Score=245.52 Aligned_cols=276 Identities=21% Similarity=0.190 Sum_probs=204.1
Q ss_pred ccceEeCCCCC------CeeEEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhhccc
Q 036865 86 WHGIECMPDKE------NVYHVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLG 159 (431)
Q Consensus 86 w~gv~C~~~~~------~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~ 159 (431)
+..|.|...+- -..+++.|++.... +.+..|..|.++++|++|++++|.+. +..|..+..+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~----------i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l- 80 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNV----------LPTIQNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQ- 80 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCC----------CSEECTTTSTTCTTCSEEECTTCCCC--EECTTTTTTC-
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCc----------cCcCChhHhccCccceEEECCCCccc--eeChhhccCc-
Confidence 45677854311 11245666665532 45555778999999999999998662 3446778888
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCC-CCCC-CCCCcCEEEc
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGS-IPSI-SFPVLNVLDL 237 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~-~l~~L~~L~l 237 (431)
++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..++++++|++|++++|.+.+. .+.. .+++|++|++
T Consensus 81 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 81 HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred cccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEc
Confidence 8999999999999888888999999999999999999976678899999999999999999863 3433 6899999999
Q ss_pred CCCCCC-----------CCc--EEEccCCCCCCCCcccccCC--------------------------------------
Q 036865 238 NQNLLM-----------DLI--LLDLSYNHLSGPFPISIRNL-------------------------------------- 266 (431)
Q Consensus 238 ~~n~l~-----------~L~--~L~ls~n~l~~~~p~~l~~l-------------------------------------- 266 (431)
++|.++ +|+ .|++++|.+.+..|..+...
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 240 (606)
T 3t6q_A 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240 (606)
T ss_dssp CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC
T ss_pred ccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccc
Confidence 999765 566 78888888876555433211
Q ss_pred -------------CCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCc
Q 036865 267 -------------NSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSI 333 (431)
Q Consensus 267 -------------~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 333 (431)
.+|+.|++++|.++ .++...|..+++|++|++++|+++ .+|..+..+++|++|++++|.+++..
T Consensus 241 ~~i~~~~~~~l~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 241 EDISPAVFEGLCEMSVESINLQKHYFF--NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp CCCCGGGGGGGGGSEEEEEECTTCCCS--SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred cccChhHhchhhcCceeEEEeecCccC--ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc
Confidence 15666777777664 455556777778888888888777 67777777778888888888777666
Q ss_pred chhhcCCcCCcEEEccCCCCCCCCccc-hHHHhhccceEEcccCCC
Q 036865 334 PNSFKNLKHVSELRLNNNGLTGPLPFE-REMVWKMKSKLRLHNNSG 378 (431)
Q Consensus 334 p~~l~~l~~L~~L~L~~N~l~g~ip~~-~~~l~~l~~~l~l~~Np~ 378 (431)
|..+..+++|++|++++|.+.+.+|.. +..+..++ .+++++|..
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~l 362 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR-ELDLSHDDI 362 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC-EEECCSSCC
T ss_pred hhhhhccCcCCEEECCCCCcccccchhhhhccCcCC-EEECCCCcc
Confidence 667777777777777777777666654 55555554 677777654
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=4.4e-28 Score=249.65 Aligned_cols=141 Identities=21% Similarity=0.298 Sum_probs=107.8
Q ss_pred cccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCC-CCCchhcCCCCCCcEeecccccCCCCcchhhcCC
Q 036865 262 SIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLR-GPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNL 340 (431)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 340 (431)
.+.++++|++|++++|.+. ......+.++++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+
T Consensus 416 ~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTR--VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp TTTTCTTCCEEECTTSCCE--ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhcCCCCCEEeCcCCccc--ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 3445555555555555542 222235667788888888888886 4678888889999999999999998778899999
Q ss_pred cCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCC-Cccccc--cCCCCCCCCCC
Q 036865 341 KHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFE-DGLDSS--IDSGIGLCESG 405 (431)
Q Consensus 341 ~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~-~~~~~~--~~~~~~~C~~~ 405 (431)
++|++|++++|++++..|..+..+..++ .+++++|++.|+|...++. .|+... ...+...|..+
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~~C~~~ 560 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQ-KIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 560 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCC-EEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCCBBTTT
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCc-EEEecCCcccCCCcchHHHHHHHHhccccCCCchhhCCC
Confidence 9999999999999987777777777776 9999999999999987776 787652 22344488765
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.7e-27 Score=251.52 Aligned_cols=249 Identities=21% Similarity=0.264 Sum_probs=208.2
Q ss_pred CCccccccccCCCCCcEEEcCccc-CCCCC-CCChhhhcccc-------cccEEEeecCCCCCCCch--hhcCCCCCCEE
Q 036865 121 TRSHISRSITKLPYLRTLFFYRCF-THNPQ-PIPAFLGQLGQ-------TLQTLVLRENGNVGPIPS--ELGNLTRLKVL 189 (431)
Q Consensus 121 ~~~~l~~~l~~l~~L~~L~l~~~~-~~~~~-~ip~~i~~l~~-------~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L 189 (431)
+.+.+|..+.++++|++|++++|. .. + .+|..++.+ + +|++|++++|.+. .+|. .++++++|++|
T Consensus 503 l~~~iP~~l~~L~~L~~L~Ls~N~~ls--g~~iP~~i~~L-~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 503 NMTQLPDFLYDLPELQSLNIACNRGIS--AAQLKADWTRL-ADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578 (876)
T ss_dssp TCCSCCGGGGGCSSCCEEECTTCTTSC--HHHHHHHHHHH-HHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred CCccChHHHhCCCCCCEEECcCCCCcc--cccchHHHHhh-hhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence 678889999999999999999885 42 3 588877776 5 8999999999888 8888 89999999999
Q ss_pred EeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC--CCCC-cCEEEcCCCCCC------------CCcEEEccCCC
Q 036865 190 DLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI--SFPV-LNVLDLNQNLLM------------DLILLDLSYNH 254 (431)
Q Consensus 190 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~-L~~L~l~~n~l~------------~L~~L~ls~n~ 254 (431)
+|++|.++ .+| .++++++|++|++++|.+. .+|.. .+++ |+.|++++|.+. +|+.|++++|.
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc
Confidence 99999998 888 8999999999999999998 67754 5677 999999999765 38899999999
Q ss_pred CCCCCccc---cc--CCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCC--------CCCcE
Q 036865 255 LSGPFPIS---IR--NLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQL--------PNLHV 321 (431)
Q Consensus 255 l~~~~p~~---l~--~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l--------~~L~~ 321 (431)
+.+.+|.. +. .+++|+.|++++|.++ .+|...+..+++|+.|+|++|+++ .+|..+... ++|+.
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQ--KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCE
T ss_pred CCCccccchhhhccccCCCcCEEEccCCcCC--ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccE
Confidence 98766532 22 3458999999999986 788877778999999999999999 666654432 38999
Q ss_pred eecccccCCCCcchhhc--CCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccC
Q 036865 322 LHLDENHLNGSIPNSFK--NLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYN 382 (431)
Q Consensus 322 L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~ 382 (431)
|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+..++ .|++++|+...++
T Consensus 733 L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~-~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 733 IDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLK-AFGIRHQRDAEGN 792 (876)
T ss_dssp EECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCC-EEECCCCBCTTCC
T ss_pred EECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCC-EEECCCCCCcccc
Confidence 999999999 7888887 99999999999999997 898888888886 9999998744333
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.7e-27 Score=242.78 Aligned_cols=276 Identities=20% Similarity=0.237 Sum_probs=156.3
Q ss_pred CccceEeCCCCCC--------eeEEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhh
Q 036865 85 RWHGIECMPDKEN--------VYHVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLG 156 (431)
Q Consensus 85 ~w~gv~C~~~~~~--------~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~ 156 (431)
.|.|+ |+....+ ..+++.|++.+.. +.+..|..+.++++|++|++++|.+. +..|..+.
T Consensus 5 ~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~----------l~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~ 71 (549)
T 2z81_A 5 DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNK----------ITYIGHGDLRACANLQVLILKSSRIN--TIEGDAFY 71 (549)
T ss_dssp CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSC----------CCEECSSTTSSCTTCCEEECTTSCCC--EECTTTTT
T ss_pred CCCce-EECCCCccccccccCCCCccEEECcCCc----------cCccChhhhhcCCcccEEECCCCCcC--ccChhhcc
Confidence 68887 7532111 1246666665533 33333455666666666666665442 22224455
Q ss_pred cccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCc-cCcccccCCCCCcEEEecCCcCCCCCCCC---CCCCc
Q 036865 157 QLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNG-SIPVSLGRINGLRSLDLSGNKLTGSIPSI---SFPVL 232 (431)
Q Consensus 157 ~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---~l~~L 232 (431)
.+ ++|++|++++|.+.+..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.++.. .+++|
T Consensus 72 ~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 72 SL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp TC-TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred cc-ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 55 566666666666555555456666666666666666553 23445555555555555555533333321 34444
Q ss_pred CEEEcC------------------------CCC-----------CCCCcEEEccCCCCCCCC--ccc-------------
Q 036865 233 NVLDLN------------------------QNL-----------LMDLILLDLSYNHLSGPF--PIS------------- 262 (431)
Q Consensus 233 ~~L~l~------------------------~n~-----------l~~L~~L~ls~n~l~~~~--p~~------------- 262 (431)
++|+++ .|. +.+|++|++++|.+.+.. +..
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 230 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred CeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceec
Confidence 444444 433 346777777777776521 000
Q ss_pred ----------------ccC-----------------------------------------------------------CC
Q 036865 263 ----------------IRN-----------------------------------------------------------LN 267 (431)
Q Consensus 263 ----------------l~~-----------------------------------------------------------l~ 267 (431)
+.. .+
T Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~ 310 (549)
T 2z81_A 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310 (549)
T ss_dssp ESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST
T ss_pred cccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcc
Confidence 000 12
Q ss_pred CcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCch---hcCCCCCCcEeecccccCCCCcc--hhhcCCcC
Q 036865 268 SLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPE---SLGQLPNLHVLHLDENHLNGSIP--NSFKNLKH 342 (431)
Q Consensus 268 ~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~ 342 (431)
+|++|++++|.++ .+|...+..+++|++|++++|++.+.+|. .++.+++|++|++++|++++..+ ..+..+++
T Consensus 311 ~L~~L~l~~n~l~--~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 311 KVKRITVENSKVF--LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TCCEEEEESSCCC--CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred cceEEEeccCccc--cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 3444444444442 44544445677888888888888765543 35677788888888888874322 45777888
Q ss_pred CcEEEccCCCCCCCCccchHHHhhccceEEcccCCC
Q 036865 343 VSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSG 378 (431)
Q Consensus 343 L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~ 378 (431)
|++|++++|+++ .+|..+..+..++ .+++++|..
T Consensus 389 L~~L~Ls~N~l~-~lp~~~~~~~~L~-~L~Ls~N~l 422 (549)
T 2z81_A 389 LTSLDISRNTFH-PMPDSCQWPEKMR-FLNLSSTGI 422 (549)
T ss_dssp CCEEECTTCCCC-CCCSCCCCCTTCC-EEECTTSCC
T ss_pred CCEEECCCCCCc-cCChhhccccccc-EEECCCCCc
Confidence 888888888887 5676666555655 777777764
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=6.4e-27 Score=234.42 Aligned_cols=234 Identities=26% Similarity=0.326 Sum_probs=197.7
Q ss_pred CCccccccccCCCCCcEEEcCcccCCCCCCCChh--hhcccccccEEEeecCCCCCCCchh-hcCCCCCCEEEeecccCC
Q 036865 121 TRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAF--LGQLGQTLQTLVLRENGNVGPIPSE-LGNLTRLKVLDLHKNNLN 197 (431)
Q Consensus 121 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~--i~~l~~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~Ls~n~l~ 197 (431)
+.+..|..+.++++|++|++++|... +.+|.. +..+ ++|++|++++|.+.+..|.. +.++++|++|++++|.++
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLD--GAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCB--THHHHSSTTTTC-TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred cCccChhhccCcccCCEEeCCCCCCC--ccccCcccccCc-ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 44455788999999999999998663 223433 6777 89999999999998887876 889999999999999999
Q ss_pred ccCcccccCC----------------------------------CCCcEEEecCCcCCCCCCC-----------------
Q 036865 198 GSIPVSLGRI----------------------------------NGLRSLDLSGNKLTGSIPS----------------- 226 (431)
Q Consensus 198 ~~~p~~l~~l----------------------------------~~L~~L~L~~n~l~~~~~~----------------- 226 (431)
+..|..+..+ ++|++|++++|.+.+..+.
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777665543 6789999998877532111
Q ss_pred ------------------------CCCCCcCEEEcCCCCCC-----------CCcEEEccCCCCCCCCcccccCCCCcce
Q 036865 227 ------------------------ISFPVLNVLDLNQNLLM-----------DLILLDLSYNHLSGPFPISIRNLNSLQA 271 (431)
Q Consensus 227 ------------------------~~l~~L~~L~l~~n~l~-----------~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 271 (431)
...++|+.|++++|.+. +|++|++++|.+.+..|..+.++++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 02368999999998654 8999999999999888889999999999
Q ss_pred eecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCC
Q 036865 272 LILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNN 351 (431)
Q Consensus 272 L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 351 (431)
|++++|.++ .++...+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 328 L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 328 LNLSQNFLG--SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp EECCSSCCC--EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccC--CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 999999985 555557899999999999999999888999999999999999999999776677899999999999999
Q ss_pred CCCCCCcc
Q 036865 352 GLTGPLPF 359 (431)
Q Consensus 352 ~l~g~ip~ 359 (431)
++++..|.
T Consensus 406 ~l~~~~~~ 413 (455)
T 3v47_A 406 PWDCSCPR 413 (455)
T ss_dssp CBCCCTTT
T ss_pred CcccCCCc
Confidence 99999884
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.4e-27 Score=243.14 Aligned_cols=275 Identities=23% Similarity=0.276 Sum_probs=175.8
Q ss_pred CccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCc-hhhcCCCCCCEEEeecccCCccC
Q 036865 122 RSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIP-SELGNLTRLKVLDLHKNNLNGSI 200 (431)
Q Consensus 122 ~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~ 200 (431)
.+..+..++++++|++|++++|.... ..+|..++.+ ++|++|++++|.+.+.+| ..|.++++|++|++++|.+++..
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSS-SCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CccCHHHhccCCCCcEEECCCCcccc-cchhhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 33344457778888888887775521 1345566677 788888888887555555 46888888888888888888766
Q ss_pred cccccC------------------------CCCCcEEEecCCcCCCCC----C---------------------------
Q 036865 201 PVSLGR------------------------INGLRSLDLSGNKLTGSI----P--------------------------- 225 (431)
Q Consensus 201 p~~l~~------------------------l~~L~~L~L~~n~l~~~~----~--------------------------- 225 (431)
|..+++ +++|++|++++|.+.+.. +
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 666543 456666777777665420 0
Q ss_pred --------------------------------------------------------------------------------
Q 036865 226 -------------------------------------------------------------------------------- 225 (431)
Q Consensus 226 -------------------------------------------------------------------------------- 225 (431)
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ 324 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc
Confidence
Q ss_pred --CC---CCCCcCEEEcCCCCCC--------------CCcEEEccCCCCCCCCc--ccccCCCCcceeecCCCCCCCCCC
Q 036865 226 --SI---SFPVLNVLDLNQNLLM--------------DLILLDLSYNHLSGPFP--ISIRNLNSLQALILKSNSMGPITI 284 (431)
Q Consensus 226 --~~---~l~~L~~L~l~~n~l~--------------~L~~L~ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~i 284 (431)
.. .+++|+.|++++|++. +|++|++++|++++..+ ..+..+++|++|++++|+++ .+
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~l 402 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--PM 402 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC--CC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc--cC
Confidence 00 1344455555544332 45555555555543211 23555666666666666654 34
Q ss_pred ChhhhcCCCCCcEEEeeCCcCCCCCchh------------------cCCCCCCcEeecccccCCCCcchhhcCCcCCcEE
Q 036865 285 PNYSFIGMRNLMILILSNMNLRGPIPES------------------LGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSEL 346 (431)
Q Consensus 285 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~------------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 346 (431)
|. .+..+++|++|++++|++++ +|.. ...+++|++|++++|+++ .+|. ...+++|++|
T Consensus 403 p~-~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L 478 (549)
T 2z81_A 403 PD-SCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVM 478 (549)
T ss_dssp CS-CCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEE
T ss_pred Ch-hhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEE
Confidence 43 34445555555555555542 2211 125678888888888887 6665 4678999999
Q ss_pred EccCCCCCCCCccchHHHhhccceEEcccCCCcccCC-CCCCCCccccc--cCCCCCCCCCC
Q 036865 347 RLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNA-GSDFEDGLDSS--IDSGIGLCESG 405 (431)
Q Consensus 347 ~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~-~~~~~~~~~~~--~~~~~~~C~~~ 405 (431)
++++|++++..|..+..+..+. .+++++||+.|+|. ..++.+|+... ...+...|..|
T Consensus 479 ~Ls~N~l~~~~~~~~~~l~~L~-~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~~C~~~ 539 (549)
T 2z81_A 479 KISRNQLKSVPDGIFDRLTSLQ-KIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 539 (549)
T ss_dssp ECCSSCCCCCCTTGGGGCTTCC-EEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCCBBTTT
T ss_pred ecCCCccCCcCHHHHhcCcccC-EEEecCCCccCCCccHHHHHHHHHhcccccCCCCeECCC
Confidence 9999999988887788888886 99999999999997 34555676442 23456778754
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1.1e-26 Score=223.32 Aligned_cols=284 Identities=21% Similarity=0.200 Sum_probs=205.0
Q ss_pred CCCCCCCCCCCCCccceEeCCCCC------CeeEEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCC
Q 036865 73 DWATEIPDVCRGRWHGIECMPDKE------NVYHVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTH 146 (431)
Q Consensus 73 ~w~~~~~~~C~~~w~gv~C~~~~~------~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~ 146 (431)
.|....+..|.|.|..+.|....- -..+++.|++.+.. +.+..+..+.++++|++|++++|.+.
T Consensus 22 ~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~----------i~~~~~~~~~~l~~L~~L~L~~n~l~ 91 (332)
T 2ft3_A 22 TYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNND----------ISELRKDDFKGLQHLYALVLVNNKIS 91 (332)
T ss_dssp ---CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSC----------CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred cccCCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCc----------CCccCHhHhhCCCCCcEEECCCCccC
Confidence 343333344555788888864321 01234555554422 33334557888999999999888652
Q ss_pred CCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCC--CC
Q 036865 147 NPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTG--SI 224 (431)
Q Consensus 147 ~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~ 224 (431)
+..|..+..+ ++|++|++++|.+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++. ..
T Consensus 92 --~~~~~~~~~l-~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 92 --KIHEKAFSPL-RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp --EECGGGSTTC-TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred --ccCHhHhhCc-CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence 2336677777 78999999998876 5666554 789999999999886555668889999999999998852 33
Q ss_pred CCC--CCCCcCEEEcCCCCCC--------CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCC
Q 036865 225 PSI--SFPVLNVLDLNQNLLM--------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRN 294 (431)
Q Consensus 225 ~~~--~l~~L~~L~l~~n~l~--------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~ 294 (431)
+.. .+ +|+.|++++|+++ +|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~ 242 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR--MIENGSLSFLPT 242 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC--CCCTTGGGGCTT
T ss_pred cccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC--cCChhHhhCCCC
Confidence 322 33 8888999888765 7888999999998777788888999999999999885 455556788899
Q ss_pred CcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcC------CcCCcEEEccCCCCC--CCCccchHHHhh
Q 036865 295 LMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKN------LKHVSELRLNNNGLT--GPLPFEREMVWK 366 (431)
Q Consensus 295 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~--g~ip~~~~~l~~ 366 (431)
|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.. .+.|+.|++++|++. +..|..+..+..
T Consensus 243 L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~ 321 (332)
T 2ft3_A 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321 (332)
T ss_dssp CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC
T ss_pred CCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccch
Confidence 999999999998 78888888999999999999998665555544 367889999999887 455555666666
Q ss_pred ccceEEcccCC
Q 036865 367 MKSKLRLHNNS 377 (431)
Q Consensus 367 l~~~l~l~~Np 377 (431)
+. .+++++|.
T Consensus 322 L~-~l~l~~n~ 331 (332)
T 2ft3_A 322 RL-AIQFGNYK 331 (332)
T ss_dssp ST-TEEC----
T ss_pred hh-hhhccccc
Confidence 65 78888774
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=3.5e-26 Score=224.67 Aligned_cols=247 Identities=22% Similarity=0.235 Sum_probs=201.0
Q ss_pred CCcccccc-ccCCCCCcEEEcCcccCCCCCCCC-hhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCc
Q 036865 121 TRSHISRS-ITKLPYLRTLFFYRCFTHNPQPIP-AFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNG 198 (431)
Q Consensus 121 ~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~ip-~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~ 198 (431)
..+.+|+. +.++++|++|++++|.+ ..++ ..+..+ ++|++|++++|.+.+..|..|+++++|++|++++|.++
T Consensus 56 ~l~~l~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~- 130 (390)
T 3o6n_A 56 TMRKLPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130 (390)
T ss_dssp EESEECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred chhhCChhHhcccccCcEEECCCCcc---cccChhhccCC-CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-
Confidence 34556665 67899999999998866 4444 467777 89999999999988877888999999999999999998
Q ss_pred cCccc-ccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCC--------CCcEEEccCCCCCCC-Ccccc---
Q 036865 199 SIPVS-LGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLM--------DLILLDLSYNHLSGP-FPISI--- 263 (431)
Q Consensus 199 ~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~--------~L~~L~ls~n~l~~~-~p~~l--- 263 (431)
.+|.. +.++++|++|++++|.+.+..+.. .+++|++|++++|+++ +|+.|++++|.+++. .+..+
T Consensus 131 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L 210 (390)
T 3o6n_A 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEEL 210 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEE
T ss_pred cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEE
Confidence 55554 689999999999999998655543 6899999999999765 788888888877631 11111
Q ss_pred ------------cCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCC
Q 036865 264 ------------RNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNG 331 (431)
Q Consensus 264 ------------~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 331 (431)
...++|+.|++++|.++. . ..+..+++|++|++++|.+.+..|..+..+++|++|++++|+++
T Consensus 211 ~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~--~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~- 285 (390)
T 3o6n_A 211 DASHNSINVVRGPVNVELTILKLQHNNLTD--T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV- 285 (390)
T ss_dssp ECCSSCCCEEECCCCSSCCEEECCSSCCCC--C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-
T ss_pred ECCCCeeeeccccccccccEEECCCCCCcc--c--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-
Confidence 123578888888888752 2 25788999999999999999888999999999999999999999
Q ss_pred CcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCc
Q 036865 332 SIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 332 ~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
.+|..+..+++|++|++++|++. .+|..+..+..++ .|++++|+..
T Consensus 286 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~-~L~L~~N~i~ 331 (390)
T 3o6n_A 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE-NLYLDHNSIV 331 (390)
T ss_dssp EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS-EEECCSSCCC
T ss_pred ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCC-EEECCCCccc
Confidence 46777788999999999999998 6788888888887 9999999854
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=249.22 Aligned_cols=264 Identities=22% Similarity=0.226 Sum_probs=152.7
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCC-ChhhhcccccccEEEeecCCCCCCCch
Q 036865 100 HVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPI-PAFLGQLGQTLQTLVLRENGNVGPIPS 178 (431)
Q Consensus 100 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~i-p~~i~~l~~~L~~L~L~~n~~~~~~p~ 178 (431)
+++.|+++... +.+..+..|.++++|++|++++|.. .+.+ |..+..+ ++|++|++++|.+.+..|.
T Consensus 25 ~l~~LdLs~N~----------i~~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 25 TTERLLLSFNY----------IRTVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNL-PNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp TCCEEEEESCC----------CCEECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSC-TTCCEEECTTCCCCEECTT
T ss_pred CcCEEECCCCc----------CCccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCC-CCCCEEECCCCcCcccCHh
Confidence 56677776543 4444566777777788887777632 1444 4556666 6777777777777766677
Q ss_pred hhcCCCCCCEEEeecccCCccCccc--ccCCCCCcEEEecCCcCCCCCCC---CCCCCcCEEEcCCCCC-----------
Q 036865 179 ELGNLTRLKVLDLHKNNLNGSIPVS--LGRINGLRSLDLSGNKLTGSIPS---ISFPVLNVLDLNQNLL----------- 242 (431)
Q Consensus 179 ~~~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~l~~n~l----------- 242 (431)
.|+++++|++|+|++|.+++.+|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 7777777777777777777655554 77777777777777777654442 1577777777777765
Q ss_pred --CCCcEEEccCCCCCCCCcccccCCCC------cceeecCCCCCCCC--------------------------------
Q 036865 243 --MDLILLDLSYNHLSGPFPISIRNLNS------LQALILKSNSMGPI-------------------------------- 282 (431)
Q Consensus 243 --~~L~~L~ls~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~-------------------------------- 282 (431)
.+|+.|++++|.+.+..|..+..+++ |+.|++++|.++..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 24556666666665555544444333 55555555543210
Q ss_pred ----------------------------CCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcc
Q 036865 283 ----------------------------TIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIP 334 (431)
Q Consensus 283 ----------------------------~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 334 (431)
.++...+..+++|+.|+|++|++.+..|..+..+++|++|+|++|.+++..|
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 1122234444555555555555554444445555555555555555554444
Q ss_pred hhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCC
Q 036865 335 NSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNS 377 (431)
Q Consensus 335 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np 377 (431)
..+..+++|+.|++++|.+.+..+..+..+..++ .|++++|.
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-~L~Ls~N~ 373 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ-TLDLRDNA 373 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCC-EEEEETCC
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCC-EEECCCCC
Confidence 4455555555555555555443333343344443 55555554
No 36
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=6.6e-26 Score=238.48 Aligned_cols=280 Identities=24% Similarity=0.253 Sum_probs=176.2
Q ss_pred CCCCccceEeCCCC------CCeeEEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhh
Q 036865 82 CRGRWHGIECMPDK------ENVYHVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFL 155 (431)
Q Consensus 82 C~~~w~gv~C~~~~------~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i 155 (431)
|.+.+..|.|.... .-..+++.|++.... +.+..+..|.++++|++|++++|... +..|..+
T Consensus 2 C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~----------l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~ 69 (680)
T 1ziw_A 2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQ----------LRRLPAANFTRYSQLTSLDVGFNTIS--KLEPELC 69 (680)
T ss_dssp --CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSC----------CCCCCGGGGGGGTTCSEEECCSSCCC--CCCTTHH
T ss_pred ceeECCeeECCCCCccccccccCCCCcEEECCCCC----------CCCcCHHHHhCCCcCcEEECCCCccC--ccCHHHH
Confidence 44456667775321 011246666666532 44444557888999999999887652 3446677
Q ss_pred hcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC--CCCCcC
Q 036865 156 GQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLN 233 (431)
Q Consensus 156 ~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~ 233 (431)
..+ ++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..+.. .+++|+
T Consensus 70 ~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 70 QKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp HHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred hcc-cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 777 78999999988877554456888999999999999888666678888899999999998888665554 678888
Q ss_pred EEEcCCCCCC-------------CCcEEEccCCCCCCCCcccccCC---------------------------CCcceee
Q 036865 234 VLDLNQNLLM-------------DLILLDLSYNHLSGPFPISIRNL---------------------------NSLQALI 273 (431)
Q Consensus 234 ~L~l~~n~l~-------------~L~~L~ls~n~l~~~~p~~l~~l---------------------------~~L~~L~ 273 (431)
+|++++|.++ +|++|++++|.+.+..|..+..+ ++|++|+
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 8888887643 67788888888876666555443 2344444
Q ss_pred cCCCCCCCCCCChhhhcCCC--CCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhh--------------
Q 036865 274 LKSNSMGPITIPNYSFIGMR--NLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSF-------------- 337 (431)
Q Consensus 274 L~~n~l~~~~i~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-------------- 337 (431)
+++|.++ .+....+..++ +|++|++++|++.+..|..++.+++|++|++++|.+++..|..+
T Consensus 229 L~~n~l~--~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 229 LSNSQLS--TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CTTSCCC--EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred ccCCccc--ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 5555442 11122333332 25566666665555555555555555555555555554444444
Q ss_pred -------------------cCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCC
Q 036865 338 -------------------KNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNS 377 (431)
Q Consensus 338 -------------------~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np 377 (431)
..+++|++|++++|.+++..|..+..+..++ .+++++|.
T Consensus 307 ~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~ 364 (680)
T 1ziw_A 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK-YLSLSNSF 364 (680)
T ss_dssp BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCC-EEECTTCB
T ss_pred hhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCc-EEECCCCc
Confidence 4455555555555555554444444455554 56665553
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.5e-26 Score=215.90 Aligned_cols=195 Identities=24% Similarity=0.250 Sum_probs=128.7
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
++|++|++++|.+.+..+..|.++++|++|++++|.++...+..+.++++|++|++++|.+.+ +
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~-~--------------- 100 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-L--------------- 100 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC-C---------------
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc-C---------------
Confidence 467888888887776555677788888888888888774444445677777777777776652 2
Q ss_pred CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCC
Q 036865 240 NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNL 319 (431)
Q Consensus 240 n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 319 (431)
.+..+..+++|++|++++|.++ .++...|..+++|++|++++|++++..+..+..+++|
T Consensus 101 -------------------~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 101 -------------------PIGVFDQLVNLAELRLDRNQLK--SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159 (270)
T ss_dssp -------------------CTTTTTTCSSCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred -------------------CHhHcccccCCCEEECCCCccC--eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence 2233445556666666666654 3344455666677777777777765444556677777
Q ss_pred cEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCC-CCCCCCccc
Q 036865 320 HVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNA-GSDFEDGLD 392 (431)
Q Consensus 320 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~-~~~~~~~~~ 392 (431)
++|++++|.+++..+..+..+++|++|++++|++++..+..+..+..+. .+++++|||.|+|. ..++..|+.
T Consensus 160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~N~~~c~c~~~~~~~~~l~ 232 (270)
T 2o6q_A 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK-MLQLQENPWDCTCNGIIYMAKWLK 232 (270)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC-EEECCSSCBCCSSSSSHHHHHHHH
T ss_pred ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC-EEEecCCCeeCCCccHHHHHHHHH
Confidence 7777777777765555677777777777777777754444455555665 78888888888886 334455543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-26 Score=237.88 Aligned_cols=248 Identities=21% Similarity=0.204 Sum_probs=204.8
Q ss_pred CCcccccc-ccCCCCCcEEEcCcccCCCCCCCC-hhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCc
Q 036865 121 TRSHISRS-ITKLPYLRTLFFYRCFTHNPQPIP-AFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNG 198 (431)
Q Consensus 121 ~~~~l~~~-l~~l~~L~~L~l~~~~~~~~~~ip-~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~ 198 (431)
..+.+|+. +.++++|++|++++|.+ ..++ ..+..+ ++|++|++++|.+.+..|..|+++++|++|+|++|.+++
T Consensus 62 ~l~~lp~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (597)
T 3oja_B 62 TMRKLPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137 (597)
T ss_dssp EESEECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCHHHHccCCCCcEEECCCCCC---CCCChHHhcCC-CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC
Confidence 44566654 67899999999999876 3444 477777 899999999999998888889999999999999999995
Q ss_pred cCcccccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCC--------CCcEEEccCCCCCCC-Ccccc----
Q 036865 199 SIPVSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLM--------DLILLDLSYNHLSGP-FPISI---- 263 (431)
Q Consensus 199 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~--------~L~~L~ls~n~l~~~-~p~~l---- 263 (431)
..+..|+++++|++|++++|.+.+..+.. .+++|+.|++++|.++ +|+.|++++|.+.+. .|..+
T Consensus 138 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ 217 (597)
T 3oja_B 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEE
T ss_pred CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheee
Confidence 54455789999999999999999766654 7899999999999765 788999998887641 11111
Q ss_pred -----------cCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCC
Q 036865 264 -----------RNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGS 332 (431)
Q Consensus 264 -----------~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 332 (431)
...++|+.|++++|.++. . ..+..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|.+++
T Consensus 218 ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 292 (597)
T 3oja_B 218 ASHNSINVVRGPVNVELTILKLQHNNLTD--T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA- 292 (597)
T ss_dssp CCSSCCCEEECSCCSCCCEEECCSSCCCC--C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-
T ss_pred ccCCcccccccccCCCCCEEECCCCCCCC--C--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-
Confidence 112467888888888742 2 357889999999999999998889999999999999999999995
Q ss_pred cchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCc
Q 036865 333 IPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 333 ~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
+|..+..+++|+.|+|++|.++ .+|..+..+..+. .|++++|+..
T Consensus 293 l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~-~L~L~~N~l~ 337 (597)
T 3oja_B 293 LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE-NLYLDHNSIV 337 (597)
T ss_dssp EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS-EEECCSSCCC
T ss_pred CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC-EEECCCCCCC
Confidence 6777888999999999999999 6888888888887 9999999864
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.6e-26 Score=239.92 Aligned_cols=94 Identities=22% Similarity=0.270 Sum_probs=56.3
Q ss_pred cccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCc-cCcccc
Q 036865 126 SRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNG-SIPVSL 204 (431)
Q Consensus 126 ~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l 204 (431)
|..|.++++|++|++++|.+. +..|..++.+ ++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..+
T Consensus 73 ~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~ 149 (606)
T 3vq2_A 73 DKAWHGLHHLSNLILTGNPIQ--SFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCC--CCCTTSSTTC-TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred HHHhhchhhcCEeECCCCccc--ccChhhcCCc-ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhH
Confidence 445566666666666665441 2225555555 566666666666655554556666666666666666653 456666
Q ss_pred cCCCCCcEEEecCCcCCC
Q 036865 205 GRINGLRSLDLSGNKLTG 222 (431)
Q Consensus 205 ~~l~~L~~L~L~~n~l~~ 222 (431)
+++++|++|++++|.+++
T Consensus 150 ~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 150 SNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp GTCTTCCEEECCSSCCCE
T ss_pred hhcCCCCEEEccCCccee
Confidence 666666666666666553
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.8e-26 Score=221.46 Aligned_cols=224 Identities=21% Similarity=0.250 Sum_probs=195.1
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchh
Q 036865 100 HVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSE 179 (431)
Q Consensus 100 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~ 179 (431)
+|+.|++.+.. ...+|+.+.++++|++|++++|.+ ..+|..++.+ ++|++|++++|.+. .+|..
T Consensus 82 ~l~~L~L~~n~-----------l~~lp~~l~~l~~L~~L~L~~n~l---~~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~~ 145 (328)
T 4fcg_A 82 GRVALELRSVP-----------LPQFPDQAFRLSHLQHMTIDAAGL---MELPDTMQQF-AGLETLTLARNPLR-ALPAS 145 (328)
T ss_dssp TCCEEEEESSC-----------CSSCCSCGGGGTTCSEEEEESSCC---CCCCSCGGGG-TTCSEEEEESCCCC-CCCGG
T ss_pred ceeEEEccCCC-----------chhcChhhhhCCCCCEEECCCCCc---cchhHHHhcc-CCCCEEECCCCccc-cCcHH
Confidence 57788887643 337888899999999999999876 5889999998 89999999999988 78999
Q ss_pred hcCCCCCCEEEeecccCCccCcccccC---------CCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEc
Q 036865 180 LGNLTRLKVLDLHKNNLNGSIPVSLGR---------INGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDL 250 (431)
Q Consensus 180 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~---------l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~l 250 (431)
++++++|++|++++|++.+.+|..+.. +++|++|++++|.++ .+|.. + ..+.+|++|++
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l----------~~l~~L~~L~L 213 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-I----------ANLQNLKSLKI 213 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-G----------GGCTTCCEEEE
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh-h----------cCCCCCCEEEc
Confidence 999999999999999988899987765 999999999999998 66643 1 13446677778
Q ss_pred cCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCC
Q 036865 251 SYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLN 330 (431)
Q Consensus 251 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 330 (431)
++|.++ .+|..+..+++|++|++++|.+ .+.+|. .+..+++|++|++++|++.+.+|..+..+++|++|+|++|.+.
T Consensus 214 ~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~-~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 214 RNSPLS-ALGPAIHHLPKLEELDLRGCTA-LRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp ESSCCC-CCCGGGGGCTTCCEEECTTCTT-CCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred cCCCCC-cCchhhccCCCCCEEECcCCcc-hhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 888888 4677899999999999999998 456665 6889999999999999999999999999999999999999999
Q ss_pred CCcchhhcCCcCCcEEEccCCCCC
Q 036865 331 GSIPNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 331 ~~~p~~l~~l~~L~~L~L~~N~l~ 354 (431)
+.+|..++++++|+.+++..+.+.
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhccHHHhhccCceEEeCCHHHHH
Confidence 999999999999999999988665
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=6.8e-26 Score=217.53 Aligned_cols=234 Identities=25% Similarity=0.240 Sum_probs=203.1
Q ss_pred CCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEE
Q 036865 134 YLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSL 213 (431)
Q Consensus 134 ~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 213 (431)
++++++++++.. ..+|..+. ++|++|++++|.+.+..+..|+++++|++|++++|.+++..|..+.++++|++|
T Consensus 32 ~l~~l~~~~~~l---~~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGL---EKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCC---CSCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCc---cccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 567777776654 55665443 689999999999887777789999999999999999997779999999999999
Q ss_pred EecCCcCCCCCCCCCCCCcCEEEcCCCCCC-----------CCcEEEccCCCCCC--CCcccccCCCCcceeecCCCCCC
Q 036865 214 DLSGNKLTGSIPSISFPVLNVLDLNQNLLM-----------DLILLDLSYNHLSG--PFPISIRNLNSLQALILKSNSMG 280 (431)
Q Consensus 214 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~-----------~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~ 280 (431)
++++|.++ .+|...+++|++|++++|.+. +|++|++++|.+.. ..+..+.++++|++|++++|.++
T Consensus 106 ~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp ECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99999998 677776799999999998764 89999999999964 66778999999999999999986
Q ss_pred CCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccc
Q 036865 281 PITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFE 360 (431)
Q Consensus 281 ~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~ 360 (431)
.++... .++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..
T Consensus 185 --~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 258 (330)
T 1xku_A 185 --TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258 (330)
T ss_dssp --SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred --cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh
Confidence 455432 389999999999999888889999999999999999999877778999999999999999999 78888
Q ss_pred hHHHhhccceEEcccCCCccc
Q 036865 361 REMVWKMKSKLRLHNNSGLCY 381 (431)
Q Consensus 361 ~~~l~~l~~~l~l~~Np~~c~ 381 (431)
+..+..++ .+++++|+....
T Consensus 259 l~~l~~L~-~L~l~~N~i~~~ 278 (330)
T 1xku_A 259 LADHKYIQ-VVYLHNNNISAI 278 (330)
T ss_dssp TTTCSSCC-EEECCSSCCCCC
T ss_pred hccCCCcC-EEECCCCcCCcc
Confidence 88887776 999999986543
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.7e-26 Score=213.46 Aligned_cols=233 Identities=24% Similarity=0.288 Sum_probs=190.2
Q ss_pred CCCCcEEEcCcccCCCCCCCC-hhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeeccc-CCccCcccccCCCC
Q 036865 132 LPYLRTLFFYRCFTHNPQPIP-AFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNN-LNGSIPVSLGRING 209 (431)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~ip-~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~ 209 (431)
.++|++|++++|.+ ..++ ..+..+ ++|++|++++|.+.+..|..|.++++|++|++++|. +....|..+.++++
T Consensus 31 ~~~l~~L~l~~n~i---~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 31 PAASQRIFLHGNRI---SHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp CTTCSEEECTTSCC---CEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCcC---CccCHHHcccC-CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 46899999999876 4455 456777 899999999999888778899999999999999997 77666888999999
Q ss_pred CcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhh
Q 036865 210 LRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSF 289 (431)
Q Consensus 210 L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~ 289 (431)
|++|++++|.+.+..+.. + ..+.+|++|++++|.+++..+..+..+++|++|++++|+++ .++...+
T Consensus 107 L~~L~l~~n~l~~~~~~~-~----------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~ 173 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGL-F----------RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--SVPERAF 173 (285)
T ss_dssp CCEEECTTSCCCCCCTTT-T----------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--EECTTTT
T ss_pred CCEEECCCCcCCEECHhH-h----------hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc--ccCHHHh
Confidence 999999999998654432 1 12345667777777887666667899999999999999986 5666678
Q ss_pred cCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccc
Q 036865 290 IGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKS 369 (431)
Q Consensus 290 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~ 369 (431)
..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+.. .+.....
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~--~~~~~l~ 251 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR--PLWAWLQ 251 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH--HHHHHHH
T ss_pred cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH--HHHHHHH
Confidence 88999999999999999888999999999999999999999877778999999999999999998765432 1112222
Q ss_pred eEEcccCCCcccCC
Q 036865 370 KLRLHNNSGLCYNA 383 (431)
Q Consensus 370 ~l~l~~Np~~c~~~ 383 (431)
.+....|...|.-.
T Consensus 252 ~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 252 KFRGSSSEVPCSLP 265 (285)
T ss_dssp HCCSEECCCBEEES
T ss_pred hcccccCccccCCc
Confidence 45567777777653
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=1.2e-26 Score=218.75 Aligned_cols=191 Identities=26% Similarity=0.250 Sum_probs=126.1
Q ss_pred CCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCccccc
Q 036865 185 RLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIR 264 (431)
Q Consensus 185 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~ 264 (431)
++++|++++|.+++..+..+.++++|++|++++|.+++..+... +.+|++|++++|.+. .+|..+.
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------l~~L~~L~Ls~N~l~-~l~~~~~ 97 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT-------------LPVLGTLDLSHNQLQ-SLPLLGQ 97 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSC-------------CTTCCEEECCSSCCS-SCCCCTT
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCC-------------CCcCCEEECCCCcCC-cCchhhc
Confidence 44444444444443334444444444444444444442111111 223333344444444 4555666
Q ss_pred CCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCc
Q 036865 265 NLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVS 344 (431)
Q Consensus 265 ~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 344 (431)
.+++|++|++++|+++ .++...|.++++|++|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+
T Consensus 98 ~l~~L~~L~l~~N~l~--~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp TCTTCCEEECCSSCCC--CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCcCc--ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 7778888888888875 55555677788888888888888866666677888888888888888865555677888889
Q ss_pred EEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCcccc
Q 036865 345 ELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDS 393 (431)
Q Consensus 345 ~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~ 393 (431)
.|++++|+++ .+|..+.....+. .+++++|||.|+|...++.+|+..
T Consensus 176 ~L~L~~N~l~-~ip~~~~~~~~L~-~l~L~~Np~~C~c~~~~l~~wl~~ 222 (290)
T 1p9a_G 176 TLLLQENSLY-TIPKGFFGSHLLP-FAFLHGNPWLCNCEILYFRRWLQD 222 (290)
T ss_dssp EEECCSSCCC-CCCTTTTTTCCCS-EEECCSCCBCCSGGGHHHHHHHHH
T ss_pred EEECCCCcCC-ccChhhcccccCC-eEEeCCCCccCcCccHHHHHHHHh
Confidence 9999988888 6787777766665 899999999999987777777653
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.4e-26 Score=234.24 Aligned_cols=225 Identities=21% Similarity=0.184 Sum_probs=119.7
Q ss_pred ccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCC-CCchhhcCCCCCCEEEeecccCCccCc
Q 036865 123 SHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVG-PIPSELGNLTRLKVLDLHKNNLNGSIP 201 (431)
Q Consensus 123 ~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p 201 (431)
+..|..|.++++|++|++++|.+ ..+|.. .+ ++|++|++++|.+.+ .+|..|+++++|++|++++|.+++
T Consensus 59 ~~~~~~~~~l~~L~~L~Ls~N~l---~~lp~~--~l-~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--- 129 (520)
T 2z7x_B 59 YLDISVFKFNQELEYLDLSHNKL---VKISCH--PT-VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--- 129 (520)
T ss_dssp EEEGGGGTTCTTCCEEECCSSCC---CEEECC--CC-CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---
T ss_pred CcChHHhhcccCCCEEecCCCce---eecCcc--cc-CCccEEeccCCccccccchhhhccCCcceEEEecCcccch---
Confidence 33355666666666666666654 345544 34 566666666666654 355666666666666666666653
Q ss_pred ccccCCCCC--cEEEecCCcC--CCCCCCC----------------------------CCCCcCEEEcCCCC--------
Q 036865 202 VSLGRINGL--RSLDLSGNKL--TGSIPSI----------------------------SFPVLNVLDLNQNL-------- 241 (431)
Q Consensus 202 ~~l~~l~~L--~~L~L~~n~l--~~~~~~~----------------------------~l~~L~~L~l~~n~-------- 241 (431)
..+..+++| ++|++++|.+ .+..|.. .+++|+.+++++|.
T Consensus 130 ~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 209 (520)
T 2z7x_B 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209 (520)
T ss_dssp GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence 234555555 6666666665 3222221 13344444444442
Q ss_pred ------------------------------------CCCCcEEEccCCCCCCCCcccc-----cCCCCcceeecCCCCCC
Q 036865 242 ------------------------------------LMDLILLDLSYNHLSGPFPISI-----RNLNSLQALILKSNSMG 280 (431)
Q Consensus 242 ------------------------------------l~~L~~L~ls~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~ 280 (431)
..+|++|++++|.+.+.+|..+ .++++|+.+++++|.+
T Consensus 210 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred ecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 1267788888887777777665 4444444444433332
Q ss_pred CCCCChhh-------------------------hcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCC--Cc
Q 036865 281 PITIPNYS-------------------------FIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNG--SI 333 (431)
Q Consensus 281 ~~~i~~~~-------------------------~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~ 333 (431)
.+|... +..+++|++|++++|++++.+|..++.+++|++|++++|++++ .+
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred --ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 111000 1344555555555555555555555555555555555555553 33
Q ss_pred chhhcCCcCCcEEEccCCCCCCCCcc
Q 036865 334 PNSFKNLKHVSELRLNNNGLTGPLPF 359 (431)
Q Consensus 334 p~~l~~l~~L~~L~L~~N~l~g~ip~ 359 (431)
|..+..+++|++|++++|++++.+|.
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred hHHHhhCCCCCEEECCCCcCCccccc
Confidence 34455555555555555555544443
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=226.61 Aligned_cols=247 Identities=22% Similarity=0.239 Sum_probs=189.4
Q ss_pred cccccccCCCCCcEEEcCcccCCCCCCC-ChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcc
Q 036865 124 HISRSITKLPYLRTLFFYRCFTHNPQPI-PAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPV 202 (431)
Q Consensus 124 ~l~~~l~~l~~L~~L~l~~~~~~~~~~i-p~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 202 (431)
.+|..+. +++++|++++|.+ ..+ +..+..+ ++|++|++++|.+.+..|..|.++++|++|+|++|.++...+.
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l---~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRI---KTLNQDEFASF-PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCC---CEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred cCCCCCC--CCCcEEECCCCcc---ceECHhHccCC-CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 4555443 5899999999876 344 5677777 8999999999999888899999999999999999999955555
Q ss_pred cccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCC-----------CCcEEEccCCCCCCCCcccccCCCCc
Q 036865 203 SLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLM-----------DLILLDLSYNHLSGPFPISIRNLNSL 269 (431)
Q Consensus 203 ~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~-----------~L~~L~ls~n~l~~~~p~~l~~l~~L 269 (431)
.|.++++|++|++++|.+.+..+.. .+++|+.|++++|.+. +|++|++++|.+++..+..+.++++|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 178 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence 6899999999999999998665544 7899999999998754 89999999999997766778999999
Q ss_pred ceeecCCCCCCCCCCChhhhcCCCCCcEEE------------------------eeCCcCCCCCchhcCCCCCCcEeecc
Q 036865 270 QALILKSNSMGPITIPNYSFIGMRNLMILI------------------------LSNMNLRGPIPESLGQLPNLHVLHLD 325 (431)
Q Consensus 270 ~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~------------------------L~~n~l~~~~p~~~~~l~~L~~L~L~ 325 (431)
+.|++++|.+. .++...|..+++|++|+ +++|++++..+..+..+++|+.|+|+
T Consensus 179 ~~L~l~~n~i~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 179 IVLRLRHLNIN--AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256 (477)
T ss_dssp CEEEEESCCCC--EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECC
T ss_pred cEEeCCCCcCc--EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECC
Confidence 99999999875 33433455555555555 45555553333456667777777777
Q ss_pred cccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCc
Q 036865 326 ENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 326 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
+|.+++..+..+..+++|++|++++|++++..|..+..+..++ .|++++|...
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~ 309 (477)
T 2id5_A 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR-VLNVSGNQLT 309 (477)
T ss_dssp SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC-EEECCSSCCS
T ss_pred CCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC-EEECCCCcCc
Confidence 7777765556677777777777777777776666666666665 7777777543
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.8e-25 Score=230.02 Aligned_cols=258 Identities=20% Similarity=0.162 Sum_probs=152.3
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchh
Q 036865 100 HVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSE 179 (431)
Q Consensus 100 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~ 179 (431)
+++.|++.... +.+..+..|.++++|++|++++|.+. +..|..+..+ ++|++|++++|.+. .+|..
T Consensus 53 ~L~~L~Ls~N~----------i~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~ 118 (562)
T 3a79_B 53 RTKALSLSQNS----------ISELRMPDISFLSELRVLRLSHNRIR--SLDFHVFLFN-QDLEYLDVSHNRLQ-NISCC 118 (562)
T ss_dssp TCCEEECCSSC----------CCCCCGGGTTTCTTCCEEECCSCCCC--EECTTTTTTC-TTCCEEECTTSCCC-EECSC
T ss_pred CcCEEECCCCC----------ccccChhhhccCCCccEEECCCCCCC--cCCHHHhCCC-CCCCEEECCCCcCC-ccCcc
Confidence 45556665432 33333456777777777777776542 2224556666 67777777777665 45544
Q ss_pred hcCCCCCCEEEeecccCCc-cCcccccCCCCCcEEEecCCcCCCCCCCCCCCCc--CEEEcCCCCC--------------
Q 036865 180 LGNLTRLKVLDLHKNNLNG-SIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVL--NVLDLNQNLL-------------- 242 (431)
Q Consensus 180 ~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L--~~L~l~~n~l-------------- 242 (431)
.+++|++|++++|++++ .+|..++++++|++|++++|.+.+ .....+++| +.|++++|.+
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-CchhhhhhceeeEEEeecccccccccCcccccccC
Confidence 67777777777777764 234667777777777777776653 111122333 4444444433
Q ss_pred --------------------------------------------------------------------------------
Q 036865 243 -------------------------------------------------------------------------------- 242 (431)
Q Consensus 243 -------------------------------------------------------------------------------- 242 (431)
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 275 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence
Q ss_pred CCCcEEEccCCCCCCCCcccc-----------------------------------------------------cCCCCc
Q 036865 243 MDLILLDLSYNHLSGPFPISI-----------------------------------------------------RNLNSL 269 (431)
Q Consensus 243 ~~L~~L~ls~n~l~~~~p~~l-----------------------------------------------------~~l~~L 269 (431)
.+|++|++++|.+.+.+|..+ ..+++|
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L 355 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCc
Confidence 156777777777776666554 455666
Q ss_pred ceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCC--CCchhcCCCCCCcEeecccccCCCCcch-hhcCCcCCcEE
Q 036865 270 QALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRG--PIPESLGQLPNLHVLHLDENHLNGSIPN-SFKNLKHVSEL 346 (431)
Q Consensus 270 ~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L 346 (431)
++|++++|.++ +.++. .+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|. .+..+++|++|
T Consensus 356 ~~L~l~~n~l~-~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 356 TFLNFTQNVFT-DSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CEEECCSSCCC-TTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred eEEECCCCccc-cchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 66666666663 22332 45666667777777776664 2234566666777777777776653443 35566666666
Q ss_pred EccCCCCCCCCccchHHHhhccceEEcccCCCc
Q 036865 347 RLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 347 ~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
++++|++++.+|..+. ..++ .|++++|...
T Consensus 434 ~l~~n~l~~~~~~~l~--~~L~-~L~L~~N~l~ 463 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLP--PKVK-VLDLHNNRIM 463 (562)
T ss_dssp ECCSSCCCGGGGSSCC--TTCS-EEECCSSCCC
T ss_pred ECCCCCCCcchhhhhc--CcCC-EEECCCCcCc
Confidence 6666666655554432 2333 6667666544
No 47
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=8.3e-25 Score=211.24 Aligned_cols=238 Identities=24% Similarity=0.313 Sum_probs=177.7
Q ss_pred cccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCccc
Q 036865 124 HISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVS 203 (431)
Q Consensus 124 ~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 203 (431)
.+++ +.++++|++|++++|.. ..++ .+..+ ++|++|++++|.+.+ ++. +.++++|++|++++|.....++ .
T Consensus 80 ~~~~-~~~l~~L~~L~L~~n~i---~~~~-~~~~l-~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~ 150 (347)
T 4fmz_A 80 DISP-LSNLVKLTNLYIGTNKI---TDIS-ALQNL-TNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-P 150 (347)
T ss_dssp CCGG-GTTCTTCCEEECCSSCC---CCCG-GGTTC-TTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-G
T ss_pred cchh-hhcCCcCCEEEccCCcc---cCch-HHcCC-CcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-c
Confidence 3444 88889999999988866 3444 46677 789999999888765 343 7888889999998886654443 4
Q ss_pred ccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC---------CCcEEEccCCCCCCCCcccccCCCCcceeec
Q 036865 204 LGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM---------DLILLDLSYNHLSGPFPISIRNLNSLQALIL 274 (431)
Q Consensus 204 l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~---------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L 274 (431)
+..+++|++|++++|.+.+..+...+++|++|++++|.+. +|+.+++++|.+.+..+ +..+++|++|++
T Consensus 151 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l 228 (347)
T 4fmz_A 151 LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI 228 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEc
Confidence 7888888888888888875544447788888888888654 67788888888875433 777888888888
Q ss_pred CCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCC
Q 036865 275 KSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 275 ~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 354 (431)
++|.++ .++. +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|+++
T Consensus 229 ~~n~l~--~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 229 GNNKIT--DLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp CSSCCC--CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred cCCccC--CCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC
Confidence 888875 3332 6677888888888888874 3 3567788888888888888753 34777888888888888888
Q ss_pred CCCccchHHHhhccceEEcccCCCccc
Q 036865 355 GPLPFEREMVWKMKSKLRLHNNSGLCY 381 (431)
Q Consensus 355 g~ip~~~~~l~~l~~~l~l~~Np~~c~ 381 (431)
+..|..+..++.++ .+++++|+....
T Consensus 301 ~~~~~~l~~l~~L~-~L~L~~n~l~~~ 326 (347)
T 4fmz_A 301 NEDMEVIGGLTNLT-TLFLSQNHITDI 326 (347)
T ss_dssp GGGHHHHHTCTTCS-EEECCSSSCCCC
T ss_pred CcChhHhhccccCC-EEEccCCccccc
Confidence 77777777777766 788888876543
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.3e-26 Score=212.70 Aligned_cols=232 Identities=22% Similarity=0.196 Sum_probs=159.7
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+.. +
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~---------- 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA-F---------- 96 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-T----------
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh-h----------
Confidence 45777777777766555556777777777777777777555556777777777777777776433221 1
Q ss_pred CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCC
Q 036865 240 NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNL 319 (431)
Q Consensus 240 n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 319 (431)
..+.+|++|++++|.+.+..+..+..+++|++|++++|.++...++. .+..+++|++|++++|++++..+..+..+++|
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred cCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 12234555555666666555556778888888888888886434554 67788888888888888887666666666666
Q ss_pred c----EeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCC-CCCCCCccccc
Q 036865 320 H----VLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNA-GSDFEDGLDSS 394 (431)
Q Consensus 320 ~----~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~-~~~~~~~~~~~ 394 (431)
+ .|++++|.+++..+. .....+|++|++++|++++..+..+..+..++ .+++++||+.|+|. ..++..|+...
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~l~~N~~~c~c~~l~~l~~~~~~~ 253 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ-KIWLHTNPWDCSCPRIDYLSRWLNKN 253 (276)
T ss_dssp TTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCC-EEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred cccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhccccccc-EEEccCCcccccCCchHHHHHHHHhc
Confidence 6 889999998854444 44445899999999999865444456666666 89999999999996 44555666542
Q ss_pred --cCCCCCCCCCC
Q 036865 395 --IDSGIGLCESG 405 (431)
Q Consensus 395 --~~~~~~~C~~~ 405 (431)
...+...|..+
T Consensus 254 ~~~~~~~~~C~~~ 266 (276)
T 2z62_A 254 SQKEQGSAKCSGS 266 (276)
T ss_dssp GGGBCSCCBBTTT
T ss_pred ccccCCCceeeCC
Confidence 22345577654
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.5e-26 Score=220.42 Aligned_cols=234 Identities=23% Similarity=0.232 Sum_probs=171.5
Q ss_pred cccccccCCCCCcEEEcCcccCCCCCCCChhhh-------cccccccEEEeecCCCCCCCchhh--cCCCCCCEEEeecc
Q 036865 124 HISRSITKLPYLRTLFFYRCFTHNPQPIPAFLG-------QLGQTLQTLVLRENGNVGPIPSEL--GNLTRLKVLDLHKN 194 (431)
Q Consensus 124 ~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~-------~l~~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~Ls~n 194 (431)
.+|..+... |++|++++|.... ..+|..+. .+ ++|++|++++|.+.+.+|..+ ..+++|++|++++|
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N 131 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRA-ARIPSRILFGALRVLGI-SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEE-EECBHHHHHHHHHHHTT-SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC
T ss_pred ccHHHHHHH--HhhcccccccccC-CCcCHHHHHHHHHhcCc-CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC
Confidence 455555443 7777887765421 35666655 56 788888888888888888775 78888888888888
Q ss_pred cCCccCcccccCC-----CCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCC--Ccccc--cC
Q 036865 195 NLNGSIPVSLGRI-----NGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGP--FPISI--RN 265 (431)
Q Consensus 195 ~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~--~p~~l--~~ 265 (431)
++++. |..+..+ ++|++|++++|.+.+..+.. + ..+.+|++|++++|++.+. .+..+ ..
T Consensus 132 ~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~----------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 132 SWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-V----------RVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp BCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-C----------CCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-h----------ccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 88855 7777766 88888888888887544332 1 1234566677777776644 23344 78
Q ss_pred CCCcceeecCCCCCCCC-CCChhhhcCCCCCcEEEeeCCcCCCCCc-hhcCCCCCCcEeecccccCCCCcchhhcCCcCC
Q 036865 266 LNSLQALILKSNSMGPI-TIPNYSFIGMRNLMILILSNMNLRGPIP-ESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHV 343 (431)
Q Consensus 266 l~~L~~L~L~~n~l~~~-~i~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 343 (431)
+++|++|++++|+++.. .++...+..+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+. ++|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L 276 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKL 276 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCc
Confidence 89999999999988521 2233445678899999999999987664 45566889999999999998 7777665 889
Q ss_pred cEEEccCCCCCCCCccchHHHhhccceEEcccCCCc
Q 036865 344 SELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 344 ~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
++|++++|++++. |. +..+..++ .+++++|++.
T Consensus 277 ~~L~Ls~N~l~~~-p~-~~~l~~L~-~L~L~~N~l~ 309 (312)
T 1wwl_A 277 SVLDLSYNRLDRN-PS-PDELPQVG-NLSLKGNPFL 309 (312)
T ss_dssp EEEECCSSCCCSC-CC-TTTSCEEE-EEECTTCTTT
T ss_pred eEEECCCCCCCCC-hh-HhhCCCCC-EEeccCCCCC
Confidence 9999999999865 65 66777776 8999999865
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.8e-24 Score=207.59 Aligned_cols=230 Identities=25% Similarity=0.336 Sum_probs=168.8
Q ss_pred cccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCC
Q 036865 128 SITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRI 207 (431)
Q Consensus 128 ~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 207 (431)
.+..+++|++|++++|.+ ..++. +..+ ++|++|++++|.+.. +| .+.++++|++|++++|.+. .++. +.++
T Consensus 61 ~~~~~~~L~~L~l~~n~i---~~~~~-~~~l-~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~-~~~~-~~~l 131 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQI---TDISP-LSNL-VKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNIS-DISP-LANL 131 (347)
T ss_dssp TGGGCTTCCEEECCSSCC---CCCGG-GTTC-TTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCC-CCGG-GTTC
T ss_pred hhhhcCCccEEEccCCcc---ccchh-hhcC-CcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCccc-Cchh-hccC
Confidence 377788888888888765 44555 6666 788888888887664 33 5788888888888888887 3444 7788
Q ss_pred CCCcEEEecCCcCCCCCCCC-CCCCcCEEEcCCCCCC---------CCcEEEccCCCCCCCCcccccCCCCcceeecCCC
Q 036865 208 NGLRSLDLSGNKLTGSIPSI-SFPVLNVLDLNQNLLM---------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSN 277 (431)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~l~~n~l~---------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n 277 (431)
++|++|++++|.....++.. .+++|+.|++++|.+. +|++|++++|.+.+ ++. +..+++|+.|++++|
T Consensus 132 ~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVN 209 (347)
T ss_dssp TTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSS
T ss_pred CceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccC
Confidence 88888888888554444433 6788888888887653 78888888888874 333 777888888888888
Q ss_pred CCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCC
Q 036865 278 SMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPL 357 (431)
Q Consensus 278 ~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 357 (431)
.++ .++. +..+++|++|++++|++++. +. +..+++|++|++++|.+++. ..+..+++|++|++++|++++ +
T Consensus 210 ~l~--~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~ 280 (347)
T 4fmz_A 210 QIT--DITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I 280 (347)
T ss_dssp CCC--CCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C
T ss_pred CCC--CCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C
Confidence 874 3332 66778888888888888844 33 77888888888888888743 457788888888888888875 3
Q ss_pred ccchHHHhhccceEEcccCCCc
Q 036865 358 PFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 358 p~~~~~l~~l~~~l~l~~Np~~ 379 (431)
+ .+..+..++ .+++++|+..
T Consensus 281 ~-~~~~l~~L~-~L~L~~n~l~ 300 (347)
T 4fmz_A 281 S-VLNNLSQLN-SLFLNNNQLG 300 (347)
T ss_dssp G-GGGGCTTCS-EEECCSSCCC
T ss_pred h-hhcCCCCCC-EEECcCCcCC
Confidence 3 355566665 8888888653
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.4e-26 Score=218.50 Aligned_cols=224 Identities=18% Similarity=0.106 Sum_probs=125.2
Q ss_pred cCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCC
Q 036865 130 TKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRING 209 (431)
Q Consensus 130 ~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 209 (431)
..+++|++|++++|.+. ...|..+..+ ++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ ..++
T Consensus 31 ~~~~~L~~L~L~~n~l~--~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~ 100 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLS--QISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPS 100 (317)
T ss_dssp TTGGGCSEEECTTSCCC--CCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTT
T ss_pred ccCCCCCEEECcCCccC--cCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCC
Confidence 34455666666555441 1222344555 556666666655544332 5555666666666665542 22 2255
Q ss_pred CcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhh
Q 036865 210 LRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSF 289 (431)
Q Consensus 210 L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~ 289 (431)
|++|++++|.+++. +...++ +|++|++++|.+++..+..+..+++|++|++++|.++ ...+...+
T Consensus 101 L~~L~l~~n~l~~~-~~~~~~-------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~ 165 (317)
T 3o53_A 101 IETLHAANNNISRV-SCSRGQ-------------GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELA 165 (317)
T ss_dssp CCEEECCSSCCSEE-EECCCS-------------SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC-EEEGGGGG
T ss_pred cCEEECCCCccCCc-CccccC-------------CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC-cccHHHHh
Confidence 66666666555522 222233 4566666666666555556666677777777777664 11122122
Q ss_pred cCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccc
Q 036865 290 IGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKS 369 (431)
Q Consensus 290 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~ 369 (431)
..+++|++|++++|++++. +. ...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+..++
T Consensus 166 ~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~- 240 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE- 240 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC-
T ss_pred hccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCC-
Confidence 3566777777777776633 32 2246677777777777763 4444666677777777777776 4565555555554
Q ss_pred eEEcccCCCcccCC
Q 036865 370 KLRLHNNSGLCYNA 383 (431)
Q Consensus 370 ~l~l~~Np~~c~~~ 383 (431)
.+++++|++.|++.
T Consensus 241 ~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 241 HFDLRGNGFHCGTL 254 (317)
T ss_dssp EEECTTCCCBHHHH
T ss_pred EEEccCCCccCcCH
Confidence 67777777766653
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.5e-25 Score=212.81 Aligned_cols=256 Identities=20% Similarity=0.176 Sum_probs=199.9
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCccccc-cccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCch
Q 036865 100 HVVSLMFGALSDDTAFPTCDPTRSHISR-SITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPS 178 (431)
Q Consensus 100 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~ 178 (431)
+++.|++.+.. ...+|. .+.++++|++|++++|.+...+.++..+..+ ++|++|++++|.+. .+|.
T Consensus 29 ~l~~L~L~~n~-----------l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~-~l~~ 95 (306)
T 2z66_A 29 SATRLELESNK-----------LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVI-TMSS 95 (306)
T ss_dssp TCCEEECCSSC-----------CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEECCSCSEE-EEEE
T ss_pred CCCEEECCCCc-----------cCccCHhHhhccccCCEEECCCCccCcccCcccccccc-cccCEEECCCCccc-cChh
Confidence 57778876643 234554 4789999999999998764333446777777 89999999999876 5777
Q ss_pred hhcCCCCCCEEEeecccCCccCc-ccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCC
Q 036865 179 ELGNLTRLKVLDLHKNNLNGSIP-VSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSG 257 (431)
Q Consensus 179 ~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~ 257 (431)
.+.++++|++|++++|.+++..+ ..+.++++|++|++++|.+.+..+.. + ..+.+|++|++++|.+.+
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~----------~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-F----------NGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-T----------TTCTTCCEEECTTCEEGG
T ss_pred hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-c----------ccCcCCCEEECCCCcccc
Confidence 89999999999999999985444 57899999999999999987555443 1 123456666677777765
Q ss_pred -CCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchh
Q 036865 258 -PFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNS 336 (431)
Q Consensus 258 -~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 336 (431)
..|..+..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccchhHHhhCcCCCEEECCCCCcC--CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 46788899999999999999985 454457888999999999999999777778899999999999999999999989
Q ss_pred hcCCc-CCcEEEccCCCCCCCCcc--chHHHhhccceEEcccCCCcccC
Q 036865 337 FKNLK-HVSELRLNNNGLTGPLPF--EREMVWKMKSKLRLHNNSGLCYN 382 (431)
Q Consensus 337 l~~l~-~L~~L~L~~N~l~g~ip~--~~~~l~~l~~~l~l~~Np~~c~~ 382 (431)
+..++ +|++|++++|++++.-+. ....+.... .+.+..+...|..
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~-~~~~~~~~~~C~~ 290 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR-QLLVEVERMECAT 290 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTG-GGBSCGGGCBEEE
T ss_pred HHhhhccCCEEEccCCCeecccChHHHHHHHHhhh-hhhccccccccCC
Confidence 99985 999999999999875432 122233332 4556667677764
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=7.1e-25 Score=225.66 Aligned_cols=93 Identities=27% Similarity=0.337 Sum_probs=69.9
Q ss_pred ccccccCCCCCcEEEcCcccCCCCCCCC-hhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCc-cCcc
Q 036865 125 ISRSITKLPYLRTLFFYRCFTHNPQPIP-AFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNG-SIPV 202 (431)
Q Consensus 125 l~~~l~~l~~L~~L~l~~~~~~~~~~ip-~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~ 202 (431)
.+..|.++++|++|++++|.. ..++ ..+..+ ++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|.
T Consensus 68 ~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~ 143 (570)
T 2z63_A 68 EDGAYQSLSHLSTLILTGNPI---QSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143 (570)
T ss_dssp CTTTTTTCTTCCEEECTTCCC---CEECTTTTTTC-TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CcccccCchhCCEEeCcCCcC---CccCHhhhcCc-cccccccccccccccCCCccccccccccEEecCCCccceecChh
Confidence 345677888888888887755 3333 556666 788888888887765544468888888888888888875 4688
Q ss_pred cccCCCCCcEEEecCCcCC
Q 036865 203 SLGRINGLRSLDLSGNKLT 221 (431)
Q Consensus 203 ~l~~l~~L~~L~L~~n~l~ 221 (431)
.++++++|++|++++|.++
T Consensus 144 ~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 144 YFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp GGGGCTTCCEEECTTSCCC
T ss_pred hhcccCCCCEEeCcCCccc
Confidence 8888888888888888665
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=9.2e-24 Score=212.34 Aligned_cols=231 Identities=27% Similarity=0.338 Sum_probs=139.1
Q ss_pred ccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcc------
Q 036865 129 ITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPV------ 202 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~------ 202 (431)
+.++++|++|++++|.. ..++. +..+ ++|++|++++|.+.+. +. +.++++|++|++++|.+.+ ++.
T Consensus 86 ~~~l~~L~~L~l~~n~l---~~~~~-~~~l-~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~ 157 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQI---ADITP-LANL-TNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-ISALSGLTS 157 (466)
T ss_dssp GTTCTTCCEEECCSSCC---CCCGG-GTTC-TTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGGGTTCTT
T ss_pred hhccccCCEEECCCCcc---ccChh-hcCC-CCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-ChhhccCCc
Confidence 66777777777776654 33443 5555 6777777777765543 32 6677777777777776653 221
Q ss_pred --------------cccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC---------CCcEEEccCCCCCCCC
Q 036865 203 --------------SLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM---------DLILLDLSYNHLSGPF 259 (431)
Q Consensus 203 --------------~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~---------~L~~L~ls~n~l~~~~ 259 (431)
.+.++++|++|++++|.+.+...-..+++|+.|++++|.+. +|++|++++|.+.+ +
T Consensus 158 L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~ 236 (466)
T 1o6v_A 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-I 236 (466)
T ss_dssp CSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred ccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc-c
Confidence 13444555555555555443211124555555555555432 55666666666553 2
Q ss_pred cccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcC
Q 036865 260 PISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKN 339 (431)
Q Consensus 260 p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 339 (431)
..+..+++|++|++++|.++ .++. +..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..
T Consensus 237 -~~l~~l~~L~~L~l~~n~l~--~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 307 (466)
T 1o6v_A 237 -GTLASLTNLTDLDLANNQIS--NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 307 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCC--CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred -hhhhcCCCCCEEECCCCccc--cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC
Confidence 24556666666666666663 2221 5566777777777777764333 6667777777777777775433 667
Q ss_pred CcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcc
Q 036865 340 LKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLC 380 (431)
Q Consensus 340 l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c 380 (431)
+++|+.|++++|++++..| +..+..++ .+++++|+...
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~-~L~l~~n~l~~ 345 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQ-RLFFYNNKVSD 345 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCC-EEECCSSCCCC
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCC-EeECCCCccCC
Confidence 7777777777777776554 44555665 77887776543
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=5.2e-24 Score=213.33 Aligned_cols=246 Identities=22% Similarity=0.214 Sum_probs=194.5
Q ss_pred CccceEeCCCCC------CeeEEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhhcc
Q 036865 85 RWHGIECMPDKE------NVYHVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQL 158 (431)
Q Consensus 85 ~w~gv~C~~~~~------~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l 158 (431)
.|..|.|...+- -..+++.|++.+.. +.+..+..|.++++|++|++++|.+. +..+..+..+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~----------i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l 122 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENN----------IQMIQADTFRHLHHLEVLQLGRNSIR--QIEVGAFNGL 122 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSC----------CCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCc----------CceECHHHcCCCCCCCEEECCCCccC--CcChhhccCc
Confidence 367788864321 11245566665432 45555778999999999999998762 2334567777
Q ss_pred cccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcC
Q 036865 159 GQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLN 238 (431)
Q Consensus 159 ~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 238 (431)
++|++|++++|.+.+..+..|.++++|++|+|++|.++...+..+.++++|++|++++|...+.++...+.
T Consensus 123 -~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-------- 193 (452)
T 3zyi_A 123 -ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE-------- 193 (452)
T ss_dssp -TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTT--------
T ss_pred -ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhcc--------
Confidence 89999999999988766677999999999999999999666668999999999999996655455554222
Q ss_pred CCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCC
Q 036865 239 QNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPN 318 (431)
Q Consensus 239 ~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 318 (431)
.+.+|++|++++|++++ +| .+..+++|++|++++|.++ .++...|.++++|+.|++++|++++..+..+..+++
T Consensus 194 --~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 194 --GLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP--EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp --TCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS--EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred --CCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc--ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 23456667777777773 34 5788999999999999985 555567999999999999999999888889999999
Q ss_pred CcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCC
Q 036865 319 LHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPL 357 (431)
Q Consensus 319 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 357 (431)
|+.|+|++|++++..+..+..+++|+.|+|++|++...-
T Consensus 268 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 268 LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred CCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 999999999999777778899999999999999987543
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-25 Score=224.75 Aligned_cols=220 Identities=19% Similarity=0.095 Sum_probs=121.3
Q ss_pred CCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcE
Q 036865 133 PYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRS 212 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 212 (431)
++|++|++++|.+. +..|..+..+ ++|++|++++|.+.+..| ++.+++|++|+|++|.+++ +| ..++|++
T Consensus 34 ~~L~~L~Ls~n~l~--~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~ 103 (487)
T 3oja_A 34 WNVKELDLSGNPLS--QISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIET 103 (487)
T ss_dssp GGCCEEECCSSCCC--CCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCE
T ss_pred CCccEEEeeCCcCC--CCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCE
Confidence 36777777776552 2233456666 677777777777665444 6677777777777777663 22 2267777
Q ss_pred EEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCC
Q 036865 213 LDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGM 292 (431)
Q Consensus 213 L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l 292 (431)
|++++|.+.+..+ ..+++| +.|++++|.+++..|..++.+++|+.|++++|.++ +..+......+
T Consensus 104 L~L~~N~l~~~~~-~~l~~L-------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~~l 168 (487)
T 3oja_A 104 LHAANNNISRVSC-SRGQGK-------------KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASS 168 (487)
T ss_dssp EECCSSCCCCEEE-CCCSSC-------------EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-EEEGGGGGGGT
T ss_pred EECcCCcCCCCCc-cccCCC-------------CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-CcChHHHhhhC
Confidence 7777777764332 234444 45555555555544555555555555666555553 22222112245
Q ss_pred CCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEE
Q 036865 293 RNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLR 372 (431)
Q Consensus 293 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~ 372 (431)
++|+.|+|++|.+++. |. ...+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+..+. .++
T Consensus 169 ~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~-~L~ 243 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE-HFD 243 (487)
T ss_dssp TTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCC-EEE
T ss_pred CcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCC-EEE
Confidence 5555566665555533 22 2235555566666555553 23335555555566665555553 444444444443 555
Q ss_pred cccCCCcccC
Q 036865 373 LHNNSGLCYN 382 (431)
Q Consensus 373 l~~Np~~c~~ 382 (431)
+++|++.|++
T Consensus 244 l~~N~l~c~~ 253 (487)
T 3oja_A 244 LRGNGFHCGT 253 (487)
T ss_dssp CTTCCBCHHH
T ss_pred cCCCCCcCcc
Confidence 5555555554
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=3.6e-26 Score=217.76 Aligned_cols=233 Identities=19% Similarity=0.137 Sum_probs=183.5
Q ss_pred cccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCC-CCCCchhhc-------CCCCCCEEEeecccCCcc
Q 036865 128 SITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGN-VGPIPSELG-------NLTRLKVLDLHKNNLNGS 199 (431)
Q Consensus 128 ~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~-~~~~p~~~~-------~l~~L~~L~Ls~n~l~~~ 199 (431)
.++..++|++|++++|.. .+|..+.. .|++|++++|.+ ...+|..+. ++++|++|++++|.+++.
T Consensus 38 ~~~~~~~L~~l~l~~n~l----~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE----ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEEEEECTTHHHHCCTT----CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred EEccCCCceeEeeccccc----ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 345677889999988765 67877765 388889999887 346777665 799999999999999988
Q ss_pred Ccccc--cCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecC
Q 036865 200 IPVSL--GRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILK 275 (431)
Q Consensus 200 ~p~~l--~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~ 275 (431)
+|..+ ..+++|++|++++|.+++. |.. .+. .....+|++|++++|++.+..|..++++++|++|+++
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~--------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQ--------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH--------TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHH--------HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC
Confidence 99887 8999999999999999865 432 110 0012467788888888988777899999999999999
Q ss_pred CCCCCCCC--CCh-hhhcCCCCCcEEEeeCCcCCC--CCc-hhcCCCCCCcEeecccccCCCCcc-hhhcCCcCCcEEEc
Q 036865 276 SNSMGPIT--IPN-YSFIGMRNLMILILSNMNLRG--PIP-ESLGQLPNLHVLHLDENHLNGSIP-NSFKNLKHVSELRL 348 (431)
Q Consensus 276 ~n~l~~~~--i~~-~~~~~l~~L~~L~L~~n~l~~--~~p-~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~L 348 (431)
+|++. +. ++. ..+..+++|++|++++|++++ .++ ..+..+++|++|++++|++++..| ..+..+++|++|++
T Consensus 182 ~N~l~-~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 182 DNPEL-GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp SCTTC-HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred CCCcC-cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 99873 22 122 123789999999999999983 222 334578999999999999998775 45677899999999
Q ss_pred cCCCCCCCCccchHHHhhccceEEcccCCCccc
Q 036865 349 NNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCY 381 (431)
Q Consensus 349 ~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~ 381 (431)
++|+++ .+|..+. ..++ .|++++|...-.
T Consensus 261 s~N~l~-~ip~~~~--~~L~-~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 261 SFTGLK-QVPKGLP--AKLS-VLDLSYNRLDRN 289 (312)
T ss_dssp TTSCCS-SCCSSCC--SEEE-EEECCSSCCCSC
T ss_pred CCCccC-hhhhhcc--CCce-EEECCCCCCCCC
Confidence 999999 8888765 5555 999999976543
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=8.3e-24 Score=211.88 Aligned_cols=239 Identities=23% Similarity=0.213 Sum_probs=187.4
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchh
Q 036865 100 HVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSE 179 (431)
Q Consensus 100 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~ 179 (431)
+++.+++.+.. +. .+| .+..+++|++|++++|.+ ..+| ++.+ ++|++|++++|.+.+. |
T Consensus 43 ~L~~L~Ls~n~----------l~-~~~-~l~~l~~L~~L~Ls~n~l---~~~~--~~~l-~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 43 TLTSLDCHNSS----------IT-DMT-GIEKLTGLTKLICTSNNI---TTLD--LSQN-TNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp TCCEEECCSSC----------CC-CCT-TGGGCTTCSEEECCSSCC---SCCC--CTTC-TTCSEEECCSSCCSCC-C--
T ss_pred CCCEEEccCCC----------cc-cCh-hhcccCCCCEEEccCCcC---CeEc--cccC-CCCCEEECcCCCCcee-e--
Confidence 56777776642 23 234 688999999999999876 4454 6777 8999999999998764 3
Q ss_pred hcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCC---------CCCCcEEEc
Q 036865 180 LGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNL---------LMDLILLDL 250 (431)
Q Consensus 180 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~---------l~~L~~L~l 250 (431)
++++++|++|++++|++++ +| ++++++|++|++++|.+++ ++...+++|++|++++|+ +.+|++|++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDC 177 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEEC
T ss_pred cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEEC
Confidence 8899999999999999985 54 8899999999999999986 565688999999999883 458999999
Q ss_pred cCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCC
Q 036865 251 SYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLN 330 (431)
Q Consensus 251 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 330 (431)
++|++++ +| +..+++|+.|++++|.++. + .+..+++|++|++++|++++ +| ++.+++|+.|++++|+++
T Consensus 178 s~n~l~~-l~--l~~l~~L~~L~l~~N~l~~--~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 178 SFNKITE-LD--VSQNKLLNRLNCDTNNITK--L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CSSCCCC-CC--CTTCTTCCEEECCSSCCSC--C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred CCCccce-ec--cccCCCCCEEECcCCcCCe--e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 9999986 44 7888999999999999863 2 26678999999999999996 56 778899999999999999
Q ss_pred CCcchhhcCCc-------CCcEEEccCCCCCCCCccchHHHhhccceEEcccCC
Q 036865 331 GSIPNSFKNLK-------HVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNS 377 (431)
Q Consensus 331 ~~~p~~l~~l~-------~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np 377 (431)
+..+..+.++. +|+.|++++|.+.|.+|. +.+..++ .+++++|+
T Consensus 247 ~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l~~L~-~L~Ls~n~ 297 (457)
T 3bz5_A 247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGCRKIK-ELDVTHNT 297 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTCTTCC-CCCCTTCT
T ss_pred CcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc--cccccCC-EEECCCCc
Confidence 76544444443 456667777776666663 3445554 77888875
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=5.7e-24 Score=198.81 Aligned_cols=208 Identities=20% Similarity=0.145 Sum_probs=169.2
Q ss_pred CCCcEEEcCcccCCCCCCCCh-hhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCc
Q 036865 133 PYLRTLFFYRCFTHNPQPIPA-FLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLR 211 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~ip~-~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 211 (431)
+.|++|++++|.+ ..++. .+..+ ++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|+
T Consensus 28 ~~l~~L~ls~n~l---~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPL---RHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCC---CEECTTTTTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCccEEECCCCcc---cccCHhHhccc-cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 5799999999876 44544 67777 8999999999998877777899999999999999999977778899999999
Q ss_pred EEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCC-CCcccccCCCCcceeecCCCCCCCCCCChhhhc
Q 036865 212 SLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSG-PFPISIRNLNSLQALILKSNSMGPITIPNYSFI 290 (431)
Q Consensus 212 ~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~ 290 (431)
+|++++|.+.+..+.. + ..+.+|++|++++|.+.+ .+|..+.++++|++|++++|+++ .++...+.
T Consensus 104 ~L~l~~n~l~~~~~~~-~----------~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~ 170 (276)
T 2z62_A 104 KLVAVETNLASLENFP-I----------GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ--SIYCTDLR 170 (276)
T ss_dssp EEECTTSCCCCSTTCC-C----------TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC--EECGGGGH
T ss_pred EEECCCCCccccCchh-c----------ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC--cCCHHHhh
Confidence 9999999998543322 1 133466677777777775 36889999999999999999986 44444565
Q ss_pred CCCCCc----EEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCc
Q 036865 291 GMRNLM----ILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLP 358 (431)
Q Consensus 291 ~l~~L~----~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 358 (431)
.+++|+ .|++++|++++..+..+ ...+|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 171 ~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp HHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 555565 89999999996555444 45589999999999997766678999999999999999998776
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.7e-23 Score=208.86 Aligned_cols=218 Identities=25% Similarity=0.273 Sum_probs=179.9
Q ss_pred CCccccccccCCCCCcEEEcCcccCCCCCCCC-hhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCcc
Q 036865 121 TRSHISRSITKLPYLRTLFFYRCFTHNPQPIP-AFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGS 199 (431)
Q Consensus 121 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip-~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 199 (431)
+.+..+..|.++++|++|++++|.+ ..++ ..+..+ ++|++|++++|.+.+..+..|.++++|++|+|++|.++..
T Consensus 76 i~~~~~~~~~~l~~L~~L~Ls~n~i---~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 151 (440)
T 3zyj_A 76 IQIIKVNSFKHLRHLEILQLSRNHI---RTIEIGAFNGL-ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151 (440)
T ss_dssp CCEECTTTTSSCSSCCEEECCSSCC---CEECGGGGTTC-SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE
T ss_pred CCeeCHHHhhCCCCCCEEECCCCcC---CccChhhccCC-ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc
Confidence 4444557899999999999999876 4444 566777 8999999999998876666799999999999999999966
Q ss_pred CcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCC
Q 036865 200 IPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSM 279 (431)
Q Consensus 200 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 279 (431)
.+..+.++++|++|++++|...+.++...+. .+.+|++|++++|.++ .+| .+..+++|++|++++|.+
T Consensus 152 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~----------~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFE----------GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCCEECTTTTT----------TCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred CHHHhhhCcccCEeCCCCCCCcceeCcchhh----------cccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence 6678999999999999997655555554222 2335666666667666 444 478899999999999998
Q ss_pred CCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCC
Q 036865 280 GPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGP 356 (431)
Q Consensus 280 ~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 356 (431)
+ .++...|.++++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++...
T Consensus 220 ~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 220 S--AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp C--EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred C--ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 5 45555789999999999999999988888999999999999999999977777889999999999999998753
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.1e-25 Score=225.36 Aligned_cols=244 Identities=18% Similarity=0.136 Sum_probs=192.2
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchh
Q 036865 100 HVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSE 179 (431)
Q Consensus 100 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~ 179 (431)
+++.|++.+.. +.+..|..|..+++|++|++++|.+ ..+++ +..+ ++|++|++++|.+.+. |
T Consensus 35 ~L~~L~Ls~n~----------l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~-l~~l-~~L~~L~Ls~N~l~~l-~-- 96 (487)
T 3oja_A 35 NVKELDLSGNP----------LSQISAADLAPFTKLELLNLSSNVL---YETLD-LESL-STLRTLDLNNNYVQEL-L-- 96 (487)
T ss_dssp GCCEEECCSSC----------CCCCCGGGGTTCTTCCEEECTTSCC---EEEEE-CTTC-TTCCEEECCSSEEEEE-E--
T ss_pred CccEEEeeCCc----------CCCCCHHHHhCCCCCCEEEeeCCCC---CCCcc-cccC-CCCCEEEecCCcCCCC-C--
Confidence 67788887643 5555667899999999999999876 33333 6777 8999999999987643 3
Q ss_pred hcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCC
Q 036865 180 LGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPF 259 (431)
Q Consensus 180 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~ 259 (431)
..++|++|++++|.+++..+. .+++|++|++++|.+++..+.. + ..+.+|+.|++++|.+++..
T Consensus 97 --~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~-~----------~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD-E----------GCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp --ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBC-G----------GGGSSEEEEECTTSCCCEEE
T ss_pred --CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchh-h----------cCCCCCCEEECCCCCCCCcC
Confidence 348999999999999965443 4689999999999998655542 1 12346677788888888777
Q ss_pred ccccc-CCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhc
Q 036865 260 PISIR-NLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFK 338 (431)
Q Consensus 260 p~~l~-~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 338 (431)
|..+. .+++|++|++++|.++ .++. ...+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+.
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~--~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~ 234 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIY--DVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR 234 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCC--EEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred hHHHhhhCCcccEEecCCCccc--cccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhc
Confidence 77776 7999999999999996 3332 3458999999999999996 4455889999999999999999 5788899
Q ss_pred CCcCCcEEEccCCCCC-CCCccchHHHhhccceEEcc-------cCCCcccCCC
Q 036865 339 NLKHVSELRLNNNGLT-GPLPFEREMVWKMKSKLRLH-------NNSGLCYNAG 384 (431)
Q Consensus 339 ~l~~L~~L~L~~N~l~-g~ip~~~~~l~~l~~~l~l~-------~Np~~c~~~~ 384 (431)
.+++|+.|++++|++. +.+|..+..+..+. .+++. .|++.|.|..
T Consensus 235 ~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~-~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ-TVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp CCTTCCEEECTTCCBCHHHHHHHHTTCHHHH-HHHHHHHHHHTSSSSCCCSSTT
T ss_pred cCCCCCEEEcCCCCCcCcchHHHHHhCCCCc-EEeccccccccCCCcccccCCc
Confidence 9999999999999998 66666666555554 56665 8888888853
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=5.9e-23 Score=206.44 Aligned_cols=234 Identities=27% Similarity=0.341 Sum_probs=192.3
Q ss_pred cccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCc--------------------hhhcCC
Q 036865 124 HISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIP--------------------SELGNL 183 (431)
Q Consensus 124 ~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p--------------------~~~~~l 183 (431)
.+++ +.++++|++|++++|.. ..++. +..+ ++|++|++++|.+.+. + ..+.++
T Consensus 104 ~~~~-~~~l~~L~~L~L~~n~l---~~~~~-~~~l-~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l 176 (466)
T 1o6v_A 104 DITP-LANLTNLTGLTLFNNQI---TDIDP-LKNL-TNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANL 176 (466)
T ss_dssp CCGG-GTTCTTCCEEECCSSCC---CCCGG-GTTC-TTCSEEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTC
T ss_pred cChh-hcCCCCCCEEECCCCCC---CCChH-HcCC-CCCCEEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccC
Confidence 3444 88889999999988865 44444 6666 7888888888765532 2 136778
Q ss_pred CCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC---------CCcEEEccCCC
Q 036865 184 TRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM---------DLILLDLSYNH 254 (431)
Q Consensus 184 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~---------~L~~L~ls~n~ 254 (431)
++|++|++++|.+++ ++ .+.++++|++|++++|.+.+..+...+++|+.|++++|++. +|++|++++|.
T Consensus 177 ~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 177 TTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp TTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred CCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc
Confidence 899999999999884 43 58899999999999999987766557899999999999765 89999999999
Q ss_pred CCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcc
Q 036865 255 LSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIP 334 (431)
Q Consensus 255 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 334 (431)
+.+..+ +..+++|++|++++|.++ .++. +..+++|+.|++++|++.+..+ +..+++|+.|++++|++++..|
T Consensus 255 l~~~~~--~~~l~~L~~L~l~~n~l~--~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 255 ISNLAP--LSGLTKLTELKLGANQIS--NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp CCCCGG--GTTCTTCSEEECCSSCCC--CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG
T ss_pred cccchh--hhcCCCCCEEECCCCccC--cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh
Confidence 996544 889999999999999985 3443 7789999999999999996544 7789999999999999997765
Q ss_pred hhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCc
Q 036865 335 NSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 335 ~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
+..+++|++|++++|++++. ..+..+..++ .+++++|...
T Consensus 327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~-~L~l~~n~l~ 366 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN-WLSAGHNQIS 366 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC-EEECCSSCCC
T ss_pred --hccCccCCEeECCCCccCCc--hhhccCCCCC-EEeCCCCccC
Confidence 78999999999999999974 3566677776 9999999764
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=4e-25 Score=211.06 Aligned_cols=236 Identities=18% Similarity=0.135 Sum_probs=183.3
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchh
Q 036865 100 HVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSE 179 (431)
Q Consensus 100 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~ 179 (431)
+++.|++.+.. +.+..|..+.++++|++|++++|.. ..+++ +..+ ++|++|++++|.+.+ ++
T Consensus 35 ~L~~L~L~~n~----------l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~-~~~l-~~L~~L~Ls~n~l~~-l~-- 96 (317)
T 3o53_A 35 NVKELDLSGNP----------LSQISAADLAPFTKLELLNLSSNVL---YETLD-LESL-STLRTLDLNNNYVQE-LL-- 96 (317)
T ss_dssp GCSEEECTTSC----------CCCCCHHHHTTCTTCCEEECTTSCC---EEEEE-ETTC-TTCCEEECCSSEEEE-EE--
T ss_pred CCCEEECcCCc----------cCcCCHHHhhCCCcCCEEECCCCcC---Ccchh-hhhc-CCCCEEECcCCcccc-cc--
Confidence 57777777643 4455567899999999999999876 33333 6777 899999999998764 22
Q ss_pred hcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCC
Q 036865 180 LGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPF 259 (431)
Q Consensus 180 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~ 259 (431)
..++|++|++++|.+++..+. .+++|++|++++|.+++..+.. + ..+.+|++|++++|.+.+..
T Consensus 97 --~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~-~----------~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 97 --VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLD-E----------GCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp --ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBC-T----------GGGSSEEEEECTTSCCCEEE
T ss_pred --CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchh-h----------hccCCCCEEECCCCCCCccc
Confidence 458999999999999855433 4688999999999998544322 1 12345667777777777655
Q ss_pred cccc-cCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhc
Q 036865 260 PISI-RNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFK 338 (431)
Q Consensus 260 p~~l-~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 338 (431)
+..+ ..+++|++|++++|.++ .++. ...+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+.
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~--~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIY--DVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCC--EEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred HHHHhhccCcCCEEECCCCcCc--cccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhh
Confidence 6665 47899999999999986 3332 3358999999999999994 5556889999999999999999 6788899
Q ss_pred CCcCCcEEEccCCCCC-CCCccchHHHhhccceEEcccC
Q 036865 339 NLKHVSELRLNNNGLT-GPLPFEREMVWKMKSKLRLHNN 376 (431)
Q Consensus 339 ~l~~L~~L~L~~N~l~-g~ip~~~~~l~~l~~~l~l~~N 376 (431)
.+++|+.|++++|++. +.+|..+..+..+. .+++.+|
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~-~l~l~~~ 272 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ-TVAKQTV 272 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHH-HHHHHHH
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccce-EEECCCc
Confidence 9999999999999998 66777777766665 6777744
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=4.1e-23 Score=206.82 Aligned_cols=211 Identities=22% Similarity=0.175 Sum_probs=181.6
Q ss_pred cccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCccccc
Q 036865 126 SRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLG 205 (431)
Q Consensus 126 ~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 205 (431)
+..++++++|++|++++|.+ ..+| .+..+ ++|++|++++|.+.+. | ++++++|++|++++|.+++ ++ ++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l---~~~~-~l~~l-~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~ 103 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSI---TDMT-GIEKL-TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VT 103 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCC---CCCT-TGGGC-TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred ccChhHcCCCCEEEccCCCc---ccCh-hhccc-CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cC
Confidence 45678899999999999876 4556 57888 8999999999998864 4 8899999999999999995 44 89
Q ss_pred CCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC--------CCcEEEccCCCCCCCCcccccCCCCcceeecCCC
Q 036865 206 RINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM--------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSN 277 (431)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~--------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n 277 (431)
++++|++|++++|.+++ ++-..+++|++|++++|+++ +|++|++++|...+.+ .+..+++|++|++++|
T Consensus 104 ~l~~L~~L~L~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK-LDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CCCcCCEEECCCCcCCe-ecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 99999999999999985 56568999999999999765 7899999999766565 4788999999999999
Q ss_pred CCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCC
Q 036865 278 SMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPL 357 (431)
Q Consensus 278 ~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 357 (431)
+++. ++ +..+++|+.|++++|++++. .++.+++|++|++++|++++ +| +..+++|+.|++++|++++..
T Consensus 181 ~l~~--l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 181 KITE--LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CCCC--CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ccce--ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 9963 44 66789999999999999964 37899999999999999996 56 889999999999999999765
Q ss_pred ccch
Q 036865 358 PFER 361 (431)
Q Consensus 358 p~~~ 361 (431)
+..+
T Consensus 250 ~~~l 253 (457)
T 3bz5_A 250 VSTL 253 (457)
T ss_dssp CTTC
T ss_pred HHHC
Confidence 4333
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=7e-24 Score=205.42 Aligned_cols=230 Identities=18% Similarity=0.201 Sum_probs=183.3
Q ss_pred ccc-ccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcc
Q 036865 124 HIS-RSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPV 202 (431)
Q Consensus 124 ~l~-~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~ 202 (431)
.++ ..+.++++|++|++++|.+. +..|..+..+ ++|++|++++|.+.+..+..++++++|++|++++|+++ .+|.
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 141 (353)
T 2z80_A 66 YISNSDLQRCVNLQALVLTSNGIN--TIEEDSFSSL-GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE 141 (353)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTC-TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred ccCHHHhccCCCCCEEECCCCccC--ccCHhhcCCC-CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence 344 47999999999999998662 2334567777 89999999999988655556999999999999999998 5555
Q ss_pred --cccCCCCCcEEEecCCc-CCCCCCCC--CCCCcCEEEcCCCCCC-----------CCcEEEccCCCCCCCCcccccCC
Q 036865 203 --SLGRINGLRSLDLSGNK-LTGSIPSI--SFPVLNVLDLNQNLLM-----------DLILLDLSYNHLSGPFPISIRNL 266 (431)
Q Consensus 203 --~l~~l~~L~~L~L~~n~-l~~~~~~~--~l~~L~~L~l~~n~l~-----------~L~~L~ls~n~l~~~~p~~l~~l 266 (431)
.+.++++|++|++++|. +....+.. .+++|++|++++|++. +|++|++++|.+.......+..+
T Consensus 142 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 221 (353)
T 2z80_A 142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 221 (353)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHT
T ss_pred hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhc
Confidence 78999999999999995 55333332 6889999999988654 78999999999974333345568
Q ss_pred CCcceeecCCCCCCCCCCCh-hhhcCCCCCcEEEeeCCcCCC----CCchhcCCCCCCcEeecccccCCCCcchh-hcCC
Q 036865 267 NSLQALILKSNSMGPITIPN-YSFIGMRNLMILILSNMNLRG----PIPESLGQLPNLHVLHLDENHLNGSIPNS-FKNL 340 (431)
Q Consensus 267 ~~L~~L~L~~n~l~~~~i~~-~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l 340 (431)
++|++|++++|.++...... ........++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. +..+
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l 300 (353)
T 2z80_A 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL 300 (353)
T ss_dssp TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC
Confidence 99999999999986322211 012346788999999999986 36788899999999999999999 56655 6899
Q ss_pred cCCcEEEccCCCCCCCCc
Q 036865 341 KHVSELRLNNNGLTGPLP 358 (431)
Q Consensus 341 ~~L~~L~L~~N~l~g~ip 358 (431)
++|++|++++|++.+..|
T Consensus 301 ~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 301 TSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCCEEECCSSCBCCCHH
T ss_pred CCCCEEEeeCCCccCcCC
Confidence 999999999999998766
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=2.9e-23 Score=207.70 Aligned_cols=238 Identities=20% Similarity=0.248 Sum_probs=165.5
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChhhhccccc-------------ccEE
Q 036865 99 YHVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQT-------------LQTL 165 (431)
Q Consensus 99 ~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~-------------L~~L 165 (431)
.+++.+.+.... + |.+|++++++++|++|++++|... +.+|..++.+ .+ +++|
T Consensus 11 ~~L~~L~l~~n~----------l-~~iP~~i~~L~~L~~L~l~~n~~~--~~~p~~~~~l-~~L~~l~l~~c~~~~l~~L 76 (454)
T 1jl5_A 11 TFLQEPLRHSSN----------L-TEMPVEAENVKSKTEYYNAWSEWE--RNAPPGNGEQ-REMAVSRLRDCLDRQAHEL 76 (454)
T ss_dssp ----------------------------------CCHHHHHHHHHHHH--HTSCTTSCCC-HHHHHHHHHHHHHHTCSEE
T ss_pred ccchhhhcccCc----------h-hhCChhHhcccchhhhhccCCccc--ccCCcccccc-hhcchhhhhhhhccCCCEE
Confidence 456666665432 4 889999999999999999887552 5778777766 44 5899
Q ss_pred EeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC--
Q 036865 166 VLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM-- 243 (431)
Q Consensus 166 ~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~-- 243 (431)
++++|.+.+ +|. -.++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|+++
T Consensus 77 ~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~-~~~L~~L~L~~n~l~~l 146 (454)
T 1jl5_A 77 ELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL-PPLLEYLGVSNNQLEKL 146 (454)
T ss_dssp ECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC-CTTCCEEECCSSCCSSC
T ss_pred EecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC-CCCCCEEECcCCCCCCC
Confidence 999998765 454 24789999999999985 7754 3789999999998874 3332 268899999888654
Q ss_pred -------CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCC
Q 036865 244 -------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQL 316 (431)
Q Consensus 244 -------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 316 (431)
+|++|++++|++++ +|..+ .+|++|++++|.++ .++ .+..+++|++|++++|++++ +|.. .
T Consensus 147 p~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~--~l~--~~~~l~~L~~L~l~~N~l~~-l~~~---~ 214 (454)
T 1jl5_A 147 PELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE--ELP--ELQNLPFLTAIYADNNSLKK-LPDL---P 214 (454)
T ss_dssp CCCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS--SCC--CCTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred cccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC--cCc--cccCCCCCCEEECCCCcCCc-CCCC---c
Confidence 78899999998885 55433 58899999999885 355 47888999999999999884 5543 2
Q ss_pred CCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCc
Q 036865 317 PNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 317 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|... ..++ .+++++|...
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~-~L~l~~N~l~ 270 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDLP---PSLE-ALNVRDNYLT 270 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSCC---TTCC-EEECCSSCCS
T ss_pred CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccccc---cccC-EEECCCCccc
Confidence 58999999999988 6774 8899999999999999985 56433 3444 8999988654
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.7e-23 Score=192.97 Aligned_cols=209 Identities=22% Similarity=0.219 Sum_probs=134.3
Q ss_pred ccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCC
Q 036865 129 ITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRIN 208 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 208 (431)
+..+++|+.|+++++.+ ..++ .+..+ ++|++|++++|.+.+ + +.+.++++|++|++++|.+++..+..+.+++
T Consensus 37 ~~~l~~L~~L~l~~~~i---~~~~-~l~~l-~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDI---KSVQ-GIQYL-PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HHHHTTCCEEECTTSCC---CCCT-TGGGC-TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccceeeeeeCCCCc---cccc-ccccC-CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 34567777777777654 2333 35555 677777777777654 2 3567777777777777777755555567777
Q ss_pred CCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhh
Q 036865 209 GLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYS 288 (431)
Q Consensus 209 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~ 288 (431)
+|++|++++|.+++..+.. + ..+.+|++|++++|.+++..+..+..+++|++|++++|+++ .++...
T Consensus 110 ~L~~L~L~~n~l~~~~~~~-~----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~ 176 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGV-F----------DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--SLPEGV 176 (272)
T ss_dssp TCCEEECTTSCCCCCCTTT-T----------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTT
T ss_pred CCCEEECCCCcCCccCHHH-h----------ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC--ccCHHH
Confidence 7777777777776433321 1 12234555555566666555555667777777777777764 444445
Q ss_pred hcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHH
Q 036865 289 FIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMV 364 (431)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l 364 (431)
+..+++|++|++++|++++..+..+..+++|++|++++|.+.+. +++|+.|+++.|.++|.+|..++.+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 66677777777777777766666667777777777777766643 4456677777777777777665433
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=2.1e-22 Score=209.44 Aligned_cols=130 Identities=25% Similarity=0.285 Sum_probs=104.4
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCCh-hhhcccccccEEEeecCCCCCCCch
Q 036865 100 HVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPA-FLGQLGQTLQTLVLRENGNVGPIPS 178 (431)
Q Consensus 100 ~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~-~i~~l~~~L~~L~L~~n~~~~~~p~ 178 (431)
.++.|+++... +.+-.+.+|.++++|++|+|++|.+ ..+++ .+..+ ++|++|+|++|++.+..+.
T Consensus 53 ~~~~LdLs~N~----------i~~l~~~~f~~l~~L~~L~Ls~N~i---~~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 53 STKNLDLSFNP----------LRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSL-SHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp TCCEEECTTSC----------CCEECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTC-TTCCEEECTTCCCCEECGG
T ss_pred CCCEEEeeCCC----------CCCCCHHHHhCCCCCCEEECCCCcC---CCcChhHhcCC-CCCCEEEccCCcCCCCCHH
Confidence 45666665532 3333346899999999999999976 56655 46777 8999999999998876667
Q ss_pred hhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCC-CCCC--CCCCcCEEEcCCCCCC
Q 036865 179 ELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGS-IPSI--SFPVLNVLDLNQNLLM 243 (431)
Q Consensus 179 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~--~l~~L~~L~l~~n~l~ 243 (431)
.|.++++|++|++++|++++..+..|+++++|++|++++|.++.. .|.. .+++|++|++++|+++
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 899999999999999999966666799999999999999998753 3433 6789999999888654
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=8.8e-22 Score=183.43 Aligned_cols=219 Identities=22% Similarity=0.256 Sum_probs=163.4
Q ss_pred CCCCCCccceEeCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCCh-hhhcc
Q 036865 80 DVCRGRWHGIECMPDKENVYHVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPA-FLGQL 158 (431)
Q Consensus 80 ~~C~~~w~gv~C~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~-~i~~l 158 (431)
+.| .|.|+.|.-.. .++.+++.... ...+|..+. +.|++|++++|.+ ..++. .+..+
T Consensus 3 ~~C--~~~~~~C~c~~----~~~~l~~~~~~-----------l~~ip~~~~--~~l~~L~l~~n~l---~~~~~~~~~~l 60 (270)
T 2o6q_A 3 ALC--KKDGGVCSCNN----NKNSVDCSSKK-----------LTAIPSNIP--ADTKKLDLQSNKL---SSLPSKAFHRL 60 (270)
T ss_dssp CCB--GGGTCSBEEET----TTTEEECTTSC-----------CSSCCSCCC--TTCSEEECCSSCC---SCCCTTSSSSC
T ss_pred ccC--CCCCCCCEeCC----CCCEEEccCCC-----------CCccCCCCC--CCCCEEECcCCCC---CeeCHHHhcCC
Confidence 678 79998885221 12345554422 223555443 6899999999876 45554 56777
Q ss_pred cccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcC
Q 036865 159 GQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLN 238 (431)
Q Consensus 159 ~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 238 (431)
++|++|++++|.+....+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++.
T Consensus 61 -~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------- 124 (270)
T 2o6q_A 61 -TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL--------------- 124 (270)
T ss_dssp -TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC---------------
T ss_pred -CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee---------------
Confidence 8999999999998865556678999999999999999966666778888999998888877632
Q ss_pred CCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCC
Q 036865 239 QNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPN 318 (431)
Q Consensus 239 ~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 318 (431)
.+..+..+++|++|++++|.++ .++...|..+++|++|++++|++++..+..+..+++
T Consensus 125 --------------------~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 125 --------------------PPRVFDSLTKLTYLSLGYNELQ--SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp --------------------CTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred --------------------CHHHhCcCcCCCEEECCCCcCC--ccCHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence 2334556677777777777775 455555777888888888888888666667888889
Q ss_pred CcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCc
Q 036865 319 LHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLP 358 (431)
Q Consensus 319 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 358 (431)
|++|++++|++++..+..+..+++|+.|++++|++...-+
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9999999998886666678888999999999998876543
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=4.1e-21 Score=192.16 Aligned_cols=153 Identities=24% Similarity=0.331 Sum_probs=104.3
Q ss_pred CCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCc
Q 036865 132 LPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLR 211 (431)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 211 (431)
+++|++|++++|... .+|. ..++|++|++++|.+.+ +| .++++++|++|++++|++++ +|..+ .+|+
T Consensus 110 ~~~L~~L~l~~n~l~---~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~ 176 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLK---ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLE 176 (454)
T ss_dssp CTTCCEEECCSSCCS---CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCC
T ss_pred cCCCcEEECCCCccC---cccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---cccc
Confidence 367888888777653 3332 11478888888887765 66 57888888888888888773 56543 4788
Q ss_pred EEEecCCcCCCCCCCC-CCCCcCEEEcCCCCCC-------CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCC
Q 036865 212 SLDLSGNKLTGSIPSI-SFPVLNVLDLNQNLLM-------DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPIT 283 (431)
Q Consensus 212 ~L~L~~n~l~~~~~~~-~l~~L~~L~l~~n~l~-------~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 283 (431)
+|++++|.+++ +|.. .+++|+.|++++|+++ +|++|++++|.+. .+| .+..+++|++|++++|+++ .
T Consensus 177 ~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~--~ 251 (454)
T 1jl5_A 177 FIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK--T 251 (454)
T ss_dssp EEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS--S
T ss_pred EEECcCCcCCc-CccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC--c
Confidence 88888888775 4443 6778888888887765 5778888888777 566 3777788888888887774 2
Q ss_pred CChhhhcCCCCCcEEEeeCCcCC
Q 036865 284 IPNYSFIGMRNLMILILSNMNLR 306 (431)
Q Consensus 284 i~~~~~~~l~~L~~L~L~~n~l~ 306 (431)
++. .+++|++|++++|+++
T Consensus 252 l~~----~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 252 LPD----LPPSLEALNVRDNYLT 270 (454)
T ss_dssp CCS----CCTTCCEEECCSSCCS
T ss_pred ccc----cccccCEEECCCCccc
Confidence 332 1245555555555555
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=191.88 Aligned_cols=227 Identities=20% Similarity=0.175 Sum_probs=165.7
Q ss_pred CCCCcEEEcCcccCCCC--CCCChhhhcccccccEEEeecCCCCCCCchhh--cCCCCCCEEEeecccCCccCc----cc
Q 036865 132 LPYLRTLFFYRCFTHNP--QPIPAFLGQLGQTLQTLVLRENGNVGPIPSEL--GNLTRLKVLDLHKNNLNGSIP----VS 203 (431)
Q Consensus 132 l~~L~~L~l~~~~~~~~--~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~ 203 (431)
...++.+.+.++..... ..+...+ .+ ++|++|++++|.+.+..|..+ .++++|++|++++|.+++..+ ..
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~-~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVL-AY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHH-HH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhc-cc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 34577888876543110 0111222 23 579999999999999999888 899999999999999997555 34
Q ss_pred ccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCC--C--cccccCCCCcceeecCCCCC
Q 036865 204 LGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGP--F--PISIRNLNSLQALILKSNSM 279 (431)
Q Consensus 204 l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~--~--p~~l~~l~~L~~L~L~~n~l 279 (431)
+..+++|++|++++|.+.+..+.. + ..+.+|++|++++|++.+. + +..+..+++|++|++++|++
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~-~----------~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 209 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQ-V----------RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM 209 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTS-C----------CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred hhhccCCCEEEeeCCCcchhhHHH-h----------ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence 567999999999999998555443 1 1233555666666665532 1 22346788999999999998
Q ss_pred CCCCCChh---hhcCCCCCcEEEeeCCcCCCCCchhcCCC---CCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCC
Q 036865 280 GPITIPNY---SFIGMRNLMILILSNMNLRGPIPESLGQL---PNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGL 353 (431)
Q Consensus 280 ~~~~i~~~---~~~~l~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 353 (431)
+ .++.. .+..+++|++|+|++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|++
T Consensus 210 ~--~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l 284 (310)
T 4glp_A 210 E--TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL 284 (310)
T ss_dssp C--CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred C--chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence 5 33321 35678999999999999998778777766 69999999999999 6777664 7999999999999
Q ss_pred CCCCccchHHHhhccceEEcccCCCc
Q 036865 354 TGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 354 ~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
++. |. +..++.+. .+++++|++.
T Consensus 285 ~~~-~~-~~~l~~L~-~L~L~~N~l~ 307 (310)
T 4glp_A 285 NRA-PQ-PDELPEVD-NLTLDGNPFL 307 (310)
T ss_dssp CSC-CC-TTSCCCCS-CEECSSTTTS
T ss_pred CCC-ch-hhhCCCcc-EEECcCCCCC
Confidence 963 33 34455665 8999999864
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=3.5e-21 Score=198.94 Aligned_cols=210 Identities=26% Similarity=0.266 Sum_probs=123.2
Q ss_pred CCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCC-----
Q 036865 133 PYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRI----- 207 (431)
Q Consensus 133 ~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l----- 207 (431)
++|++|++++|.+ ..+|. .+ ++|++|++++|.+. .+|. .+++|++|++++|.++ .+|. .+
T Consensus 61 ~~L~~L~L~~N~l---~~lp~---~l-~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~ 125 (622)
T 3g06_A 61 AHITTLVIPDNNL---TSLPA---LP-PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCK 125 (622)
T ss_dssp TTCSEEEECSCCC---SCCCC---CC-TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCE
T ss_pred CCCcEEEecCCCC---CCCCC---cC-CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCE
Confidence 4556666655544 33443 22 45555555555544 2333 4455555555555555 2333 23
Q ss_pred ---------------CCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCC-------CCCcEEEccCCCCCCCCcccccC
Q 036865 208 ---------------NGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLL-------MDLILLDLSYNHLSGPFPISIRN 265 (431)
Q Consensus 208 ---------------~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l-------~~L~~L~ls~n~l~~~~p~~l~~ 265 (431)
++|++|++++|.+++ +|. .+++|+.|++++|.+ .+|+.|++++|.+++ +|..
T Consensus 126 L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~-~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~--- 199 (622)
T 3g06_A 126 LWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPA-LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTL--- 199 (622)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCC---
T ss_pred EECCCCCCCcCCCCCCCCCEEECcCCcCCC-cCC-ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCc---
Confidence 444455555554442 221 234445555554443 245556666665553 3321
Q ss_pred CCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcE
Q 036865 266 LNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSE 345 (431)
Q Consensus 266 l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 345 (431)
+++|+.|++++|.++ .++. .+++|+.|++++|++++ +| ..+++|+.|++++|.++ .+|. .+++|+.
T Consensus 200 ~~~L~~L~L~~N~l~--~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~ 265 (622)
T 3g06_A 200 PSELYKLWAYNNRLT--SLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLS 265 (622)
T ss_dssp CTTCCEEECCSSCCS--SCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCE
T ss_pred cchhhEEECcCCccc--ccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcE
Confidence 245555666665553 3332 24678888888888874 55 45678888888888888 4555 5678888
Q ss_pred EEccCCCCCCCCccchHHHhhccceEEcccCCCc
Q 036865 346 LRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 346 L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
|++++|+++ .+|..+..+..+. .+++++|++.
T Consensus 266 L~Ls~N~L~-~lp~~l~~l~~L~-~L~L~~N~l~ 297 (622)
T 3g06_A 266 LSVYRNQLT-RLPESLIHLSSET-TVNLEGNPLS 297 (622)
T ss_dssp EECCSSCCC-SCCGGGGGSCTTC-EEECCSCCCC
T ss_pred EeCCCCCCC-cCCHHHhhccccC-EEEecCCCCC
Confidence 888888888 7788777777776 8888888765
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.7e-22 Score=184.84 Aligned_cols=181 Identities=22% Similarity=0.272 Sum_probs=115.6
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
...++++++++.+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+.. +
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~---------- 79 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-F---------- 79 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-T----------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH-h----------
Confidence 45778888888765 5666554 57888888888888777777888888888888888877433321 1
Q ss_pred CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCC
Q 036865 240 NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNL 319 (431)
Q Consensus 240 n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 319 (431)
..+.+|++|++++|.+++..+..+..+++|++|++++|+++ .++...|..+++|++|+|++|++++..+..+..+++|
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK--SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC--CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 12234445555555555444455566666666666666664 4444445566666666666666664444456666666
Q ss_pred cEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCC
Q 036865 320 HVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGP 356 (431)
Q Consensus 320 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 356 (431)
++|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6666666666655555566666666666666666544
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=5.7e-22 Score=184.93 Aligned_cols=186 Identities=24% Similarity=0.303 Sum_probs=126.5
Q ss_pred hhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCE
Q 036865 155 LGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNV 234 (431)
Q Consensus 155 i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 234 (431)
...+ ++|+.|++++|.+.. ++ .+..+++|++|++++|.+++ + ..+.++++|++|++++|.+++..+.. +
T Consensus 37 ~~~l-~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~-~----- 105 (272)
T 3rfs_A 37 QNEL-NSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGV-F----- 105 (272)
T ss_dssp HHHH-TTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTT-T-----
T ss_pred cccc-cceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhH-h-----
Confidence 3445 678888888877553 33 47778888888888888774 3 36778888888888888777433321 1
Q ss_pred EEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcC
Q 036865 235 LDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLG 314 (431)
Q Consensus 235 L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 314 (431)
..+.+|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..++
T Consensus 106 -----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 106 -----DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ--SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp -----TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred -----cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC--ccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence 12234555566666666555555677777777777777774 44444566777777777777777766566667
Q ss_pred CCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCc
Q 036865 315 QLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLP 358 (431)
Q Consensus 315 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 358 (431)
.+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 77777777777777776666667777777777777777776655
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=8.2e-22 Score=181.60 Aligned_cols=160 Identities=26% Similarity=0.284 Sum_probs=130.9
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
+++++|++++|.+.+..+..|.++++|++|+|++|.+++..+..+.++++|++|++++|.+++..+.. +.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~--------- 104 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV-FD--------- 104 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TT---------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH-hc---------
Confidence 46888888888888777777888899999999999888777777888889999999998887433322 11
Q ss_pred CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCC
Q 036865 240 NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNL 319 (431)
Q Consensus 240 n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 319 (431)
.+.+|++|++++|.+++..+..+..+++|++|++++|+++ .++...|..+++|++|+|++|++++..+..+..+++|
T Consensus 105 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 105 -HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ--SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp -TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred -ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC--ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 2345666777777777655666789999999999999996 6666678899999999999999997777789999999
Q ss_pred cEeecccccCCCC
Q 036865 320 HVLHLDENHLNGS 332 (431)
Q Consensus 320 ~~L~L~~N~l~~~ 332 (431)
+.|++++|++.+.
T Consensus 182 ~~L~l~~N~~~c~ 194 (251)
T 3m19_A 182 QTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSCCBCTT
T ss_pred CEEEeeCCceeCC
Confidence 9999999999865
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=6.2e-22 Score=180.97 Aligned_cols=197 Identities=18% Similarity=0.269 Sum_probs=116.7
Q ss_pred CCcEEEcCcccCCCCCCCCh-hhhcccccccEEEeecCC-CCCCCchhhcCCCCCCEEEeec-ccCCccCcccccCCCCC
Q 036865 134 YLRTLFFYRCFTHNPQPIPA-FLGQLGQTLQTLVLRENG-NVGPIPSELGNLTRLKVLDLHK-NNLNGSIPVSLGRINGL 210 (431)
Q Consensus 134 ~L~~L~l~~~~~~~~~~ip~-~i~~l~~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L 210 (431)
.|++|++++|.+ ..+|. .+..+ ++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..|.++++|
T Consensus 32 ~l~~L~l~~n~l---~~i~~~~~~~l-~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 32 STQTLKLIETHL---RTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TCCEEEEESCCC---SEECTTTTTTC-TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred cccEEEEeCCcc---eEECHHHccCC-CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 677777777655 44444 45555 677777777776 5444444677777777777777 77775545567777777
Q ss_pred cEEEecCCcCCCCCCCC-CCCCcCEEEcCCCCCCCCcEEEccCC-CCCCCCcccccCCCCcc-eeecCCCCCCCCCCChh
Q 036865 211 RSLDLSGNKLTGSIPSI-SFPVLNVLDLNQNLLMDLILLDLSYN-HLSGPFPISIRNLNSLQ-ALILKSNSMGPITIPNY 287 (431)
Q Consensus 211 ~~L~L~~n~l~~~~~~~-~l~~L~~L~l~~n~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~i~~~ 287 (431)
++|++++|.+++ +|.. .+++|+ .|++|++++| .+++..+..+.++++|+ +|++++|+++ .++..
T Consensus 108 ~~L~l~~n~l~~-lp~~~~l~~L~----------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~ 174 (239)
T 2xwt_C 108 KFLGIFNTGLKM-FPDLTKVYSTD----------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGY 174 (239)
T ss_dssp CEEEEEEECCCS-CCCCTTCCBCC----------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTT
T ss_pred CEEeCCCCCCcc-ccccccccccc----------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHh
Confidence 777777777763 4431 122111 1225566666 55544444566666666 6666666664 44444
Q ss_pred hhcCCCCCcEEEeeCCc-CCCCCchhcCCC-CCCcEeecccccCCCCcchhhcCCcCCcEEEccCC
Q 036865 288 SFIGMRNLMILILSNMN-LRGPIPESLGQL-PNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNN 351 (431)
Q Consensus 288 ~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 351 (431)
.+.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 4444 566666666663 654444555555 66666666666666 33332 4555666666554
No 77
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=4.4e-22 Score=179.76 Aligned_cols=175 Identities=18% Similarity=0.225 Sum_probs=134.9
Q ss_pred CcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeec
Q 036865 245 LILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHL 324 (431)
Q Consensus 245 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 324 (431)
++.|++++|.+++..+..+..+++|++|++++|.++ .+....|.++++|++|+|++|++++..+..+..+++|++|+|
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC--EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC--CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 334444455555444556777888888888888875 444446788888888888888888555556788889999999
Q ss_pred ccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCccccc-cCCCCCCCC
Q 036865 325 DENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSS-IDSGIGLCE 403 (431)
Q Consensus 325 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~-~~~~~~~C~ 403 (431)
++|++++..|..+..+++|++|+|++|++++..+..+..+..+. .+++++|||.|+|...|+.+|+... .......|.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~C~ 190 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ-TMHLAQNPFICDCHLKWLADYLHTNPIETSGARCT 190 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC-EEECCSSCEECSGGGHHHHHHHHHCCCBCSCCBEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC-EEEeCCCCcCCCCccHHHHHHHHhCCCCccCCCcC
Confidence 99999987788888999999999999999876666676677776 8999999999999998888887652 234567899
Q ss_pred CCCCCCCCccccccccccc
Q 036865 404 SGKPGSANSVQHLGTLEEN 422 (431)
Q Consensus 404 ~~~~~~~~~l~~l~~~~~~ 422 (431)
.|.....+.+.+++..+..
T Consensus 191 ~P~~l~g~~l~~l~~~~~~ 209 (220)
T 2v9t_B 191 SPRRLANKRIGQIKSKKFR 209 (220)
T ss_dssp ESGGGTTCBGGGSCGGGCC
T ss_pred CchHHcCCchhhCCHHHCc
Confidence 9988889999888865544
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.2e-21 Score=182.34 Aligned_cols=195 Identities=24% Similarity=0.352 Sum_probs=149.8
Q ss_pred ccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCC
Q 036865 129 ITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRIN 208 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 208 (431)
+.++++|++|++++|.+ ..++ .+..+ ++|++|++++|.+.+. +. +.++++|++|++++|.+++ ++ .+.+++
T Consensus 37 ~~~l~~L~~L~l~~~~i---~~l~-~~~~l-~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGV---TTIE-GVQYL-NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCC---CCCT-TGGGC-TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCT
T ss_pred HHHcCCcCEEEeeCCCc---cCch-hhhcc-CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCC
Confidence 44678899999988866 4555 46677 7899999999987754 44 8889999999999999884 44 688899
Q ss_pred CCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhh
Q 036865 209 GLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYS 288 (431)
Q Consensus 209 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~ 288 (431)
+|++|++++|.+++..+-.. +.+|++|++++|.+++. +. +..+++|++|++++|.++ .++.
T Consensus 108 ~L~~L~l~~n~l~~~~~l~~-------------l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~--~~~~-- 168 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVTPLAG-------------LSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVS--DLTP-- 168 (308)
T ss_dssp TCCEEECTTSCCCCCGGGTT-------------CTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC--CCGG--
T ss_pred CCCEEECCCCCCCCchhhcC-------------CCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCC--CChh--
Confidence 99999999998875322113 34555666666666643 32 778899999999999885 3443
Q ss_pred hcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCC
Q 036865 289 FIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTG 355 (431)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 355 (431)
+..+++|+.|++++|++++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|++++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 7788999999999999985433 778889999999999998554 37889999999999999874
No 79
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=9.1e-22 Score=177.65 Aligned_cols=172 Identities=20% Similarity=0.183 Sum_probs=138.6
Q ss_pred EEEccCCCCCCCCc-ccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecc
Q 036865 247 LLDLSYNHLSGPFP-ISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLD 325 (431)
Q Consensus 247 ~L~ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 325 (431)
+|++++|.+++..+ ..+..+++|++|++++|.++ .++...|.++++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 34444444443323 34678889999999999885 5555578889999999999999997778889999999999999
Q ss_pred cccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCccccc-cCCCCCCCCC
Q 036865 326 ENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSS-IDSGIGLCES 404 (431)
Q Consensus 326 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~-~~~~~~~C~~ 404 (431)
+|++++..|..+..+++|++|+|++|++++..|..+..+..+. .+++++|++.|+|...|+.+|+... ...+...|..
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~ 192 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS-TLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQK 192 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC-EEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEE
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC-EEEecCcCCcCCCchHHHHHHHHhcCccccCCccCC
Confidence 9999988888899999999999999999988888888887876 9999999999999988888887653 2345678988
Q ss_pred CCCCCCCcccccccccc
Q 036865 405 GKPGSANSVQHLGTLEE 421 (431)
Q Consensus 405 ~~~~~~~~l~~l~~~~~ 421 (431)
|.....+.+..++..+.
T Consensus 193 P~~l~g~~l~~l~~~~~ 209 (220)
T 2v70_A 193 PYFLKEIPIQDVAIQDF 209 (220)
T ss_dssp SGGGTTEEGGGSCGGGC
T ss_pred ChHHCCCChhhCCHHHc
Confidence 87777777777765443
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=7.7e-23 Score=200.55 Aligned_cols=233 Identities=15% Similarity=0.138 Sum_probs=151.8
Q ss_pred cccccccCCCCCcEEEcCcccCCCC--CCCChhhhcccccccEEEeecCC---CCCCCchhh-------cCCCCCCEEEe
Q 036865 124 HISRSITKLPYLRTLFFYRCFTHNP--QPIPAFLGQLGQTLQTLVLRENG---NVGPIPSEL-------GNLTRLKVLDL 191 (431)
Q Consensus 124 ~l~~~l~~l~~L~~L~l~~~~~~~~--~~ip~~i~~l~~~L~~L~L~~n~---~~~~~p~~~-------~~l~~L~~L~L 191 (431)
.++..+..+++|++|++++|.+... ..++..+..+ ++|++|++++|. +.+.+|..+ .++++|++|+|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhC-CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 4667788899999999999865321 1133345566 799999999864 445566655 68999999999
Q ss_pred ecccCCc----cCcccccCCCCCcEEEecCCcCCCCCCCC------CC---------CCcCEEEcCCCCCC---------
Q 036865 192 HKNNLNG----SIPVSLGRINGLRSLDLSGNKLTGSIPSI------SF---------PVLNVLDLNQNLLM--------- 243 (431)
Q Consensus 192 s~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~------~l---------~~L~~L~l~~n~l~--------- 243 (431)
++|.+++ .+|..+.++++|++|+|++|.+....+.. .+ ++|++|++++|+++
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999986 47778889999999999999885322211 12 67777777777653
Q ss_pred ------CCcEEEccCCCCCC-----CCcccccCCCCcceeecCCCCCCC---CCCChhhhcCCCCCcEEEeeCCcCCCC-
Q 036865 244 ------DLILLDLSYNHLSG-----PFPISIRNLNSLQALILKSNSMGP---ITIPNYSFIGMRNLMILILSNMNLRGP- 308 (431)
Q Consensus 244 ------~L~~L~ls~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~~---~~i~~~~~~~l~~L~~L~L~~n~l~~~- 308 (431)
+|++|++++|.++. ..+..+..+++|++|++++|.++. ..++. .+..+++|++|+|++|.+++.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhh
Confidence 56666666666652 122255566666666666666521 12232 455566666666666666643
Q ss_pred ---Cchhc--CCCCCCcEeecccccCCC----Ccchhh-cCCcCCcEEEccCCCCCCCCc
Q 036865 309 ---IPESL--GQLPNLHVLHLDENHLNG----SIPNSF-KNLKHVSELRLNNNGLTGPLP 358 (431)
Q Consensus 309 ---~p~~~--~~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~L~~N~l~g~ip 358 (431)
++..+ +.+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..+
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 34444 336666666666666664 255555 446666666666666665553
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=2.2e-20 Score=192.94 Aligned_cols=205 Identities=25% Similarity=0.281 Sum_probs=157.3
Q ss_pred CCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCC-------------------CCchhhcCCCCCCEEEe
Q 036865 131 KLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVG-------------------PIPSELGNLTRLKVLDL 191 (431)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~-------------------~~p~~~~~l~~L~~L~L 191 (431)
.+++|++|++++|.+ ..+|. .+ ++|++|++++|.+.+ .+|. .+++|++|++
T Consensus 79 ~l~~L~~L~Ls~N~l---~~lp~---~l-~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~L 148 (622)
T 3g06_A 79 LPPELRTLEVSGNQL---TSLPV---LP-PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSV 148 (622)
T ss_dssp CCTTCCEEEECSCCC---SCCCC---CC-TTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred cCCCCCEEEcCCCcC---CcCCC---CC-CCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCC---CCCCCCEEEC
Confidence 355666666666654 33443 22 445555555554432 1332 2377888888
Q ss_pred ecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC-------CCcEEEccCCCCCCCCccccc
Q 036865 192 HKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM-------DLILLDLSYNHLSGPFPISIR 264 (431)
Q Consensus 192 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~-------~L~~L~ls~n~l~~~~p~~l~ 264 (431)
++|.++ .+|. .+++|+.|++++|.++ .+| ..+++|+.|++++|.++ +|+.|++++|.++ .+|..
T Consensus 149 s~N~l~-~l~~---~~~~L~~L~L~~N~l~-~l~-~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~~~-- 219 (622)
T 3g06_A 149 SDNQLA-SLPA---LPSELCKLWAYNNQLT-SLP-MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPAL-- 219 (622)
T ss_dssp CSSCCS-CCCC---CCTTCCEEECCSSCCS-CCC-CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCC--
T ss_pred cCCcCC-CcCC---ccCCCCEEECCCCCCC-CCc-ccCCCCcEEECCCCCCCCCCCccchhhEEECcCCccc-ccCCC--
Confidence 888877 4554 3468999999999998 466 56899999999999876 6899999999998 45543
Q ss_pred CCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCc
Q 036865 265 NLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVS 344 (431)
Q Consensus 265 ~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 344 (431)
+++|++|++++|.++ .++ ..+++|+.|++++|+++ .+|. .+++|+.|+|++|+++ .+|..+.++++|+
T Consensus 220 -~~~L~~L~Ls~N~L~--~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 220 -PSGLKELIVSGNRLT--SLP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp -CTTCCEEECCSSCCS--CCC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred -CCCCCEEEccCCccC--cCC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence 588999999999996 455 34689999999999999 5666 6789999999999999 7899999999999
Q ss_pred EEEccCCCCCCCCccchHHHhh
Q 036865 345 ELRLNNNGLTGPLPFEREMVWK 366 (431)
Q Consensus 345 ~L~L~~N~l~g~ip~~~~~l~~ 366 (431)
.|+|++|++++.+|..+..+..
T Consensus 288 ~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 288 TVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp EEECCSCCCCHHHHHHHHHHHH
T ss_pred EEEecCCCCCCcCHHHHHhccc
Confidence 9999999999988887776654
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=5.7e-23 Score=201.45 Aligned_cols=232 Identities=19% Similarity=0.208 Sum_probs=186.5
Q ss_pred CCCChhhhcccccccEEEeecCCCCCCCc----hhhcCCCCCCEEEeeccc---CCccCcccc-------cCCCCCcEEE
Q 036865 149 QPIPAFLGQLGQTLQTLVLRENGNVGPIP----SELGNLTRLKVLDLHKNN---LNGSIPVSL-------GRINGLRSLD 214 (431)
Q Consensus 149 ~~ip~~i~~l~~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~Ls~n~---l~~~~p~~l-------~~l~~L~~L~ 214 (431)
..++..+..+ ++|++|++++|.+....+ ..+.++++|++|+|++|. +++.+|..+ .++++|++|+
T Consensus 22 ~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 22 KSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HTTSHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHhcC-CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 4677888888 899999999998876543 347789999999999964 445666655 7899999999
Q ss_pred ecCCcCCCC----CCCC--CCCCcCEEEcCCCCC------------------------CCCcEEEccCCCCC-CCCc---
Q 036865 215 LSGNKLTGS----IPSI--SFPVLNVLDLNQNLL------------------------MDLILLDLSYNHLS-GPFP--- 260 (431)
Q Consensus 215 L~~n~l~~~----~~~~--~l~~L~~L~l~~n~l------------------------~~L~~L~ls~n~l~-~~~p--- 260 (431)
|++|.+.+. ++.. .+++|++|++++|.+ .+|++|++++|.++ +.++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 999999862 3332 679999999999986 59999999999998 3444
Q ss_pred ccccCCCCcceeecCCCCCCCCC---CChhhhcCCCCCcEEEeeCCcCC----CCCchhcCCCCCCcEeecccccCCCC-
Q 036865 261 ISIRNLNSLQALILKSNSMGPIT---IPNYSFIGMRNLMILILSNMNLR----GPIPESLGQLPNLHVLHLDENHLNGS- 332 (431)
Q Consensus 261 ~~l~~l~~L~~L~L~~n~l~~~~---i~~~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~- 332 (431)
..+..+++|++|++++|.++... +....+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 46778899999999999884211 22225677899999999999996 56788889999999999999999865
Q ss_pred ---cchhhc--CCcCCcEEEccCCCCCC----CCccchH-HHhhccceEEcccCCCcccC
Q 036865 333 ---IPNSFK--NLKHVSELRLNNNGLTG----PLPFERE-MVWKMKSKLRLHNNSGLCYN 382 (431)
Q Consensus 333 ---~p~~l~--~l~~L~~L~L~~N~l~g----~ip~~~~-~l~~l~~~l~l~~Np~~c~~ 382 (431)
++..+. .+++|+.|+|++|.+++ .+|..+. .++.+. .|++++|+.....
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~-~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL-FLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC-EEECTTSBSCTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce-EEEccCCcCCcch
Confidence 566664 49999999999999997 4787773 356776 9999999876544
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=8.7e-21 Score=169.53 Aligned_cols=161 Identities=24% Similarity=0.237 Sum_probs=80.4
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
++|++|++++|.+.+..+..|.++++|++|++++|++++..+..+.++++|++|++++|.+++. +...+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~---------- 96 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVF---------- 96 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTT----------
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHh----------
Confidence 4566667766666654445566777777777777777744444556677777777777766522 21110
Q ss_pred CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCC
Q 036865 240 NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNL 319 (431)
Q Consensus 240 n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 319 (431)
..+.+|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+ .+++|
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l 167 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK--SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGI 167 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSCCBCC-------CTTTT
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc--eeCHHHhccCCCccEEEecCCCeec-------CCCCH
Confidence 01122333333333333333333444555555555555543 2333334444455555555544332 22344
Q ss_pred cEeecccccCCCCcchhhcCC
Q 036865 320 HVLHLDENHLNGSIPNSFKNL 340 (431)
Q Consensus 320 ~~L~L~~N~l~~~~p~~l~~l 340 (431)
++|+++.|+++|.+|..++.+
T Consensus 168 ~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 168 RYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp HHHHHHHHHCTTTBBCTTSSB
T ss_pred HHHHHHHHhCCceeeccCccc
Confidence 444444454544444444433
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.1e-21 Score=174.85 Aligned_cols=198 Identities=22% Similarity=0.209 Sum_probs=157.3
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeeccc-CCccCcccccCCCCCcEEEecC-CcCCCCCCCCCCCCcCEEEc
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNN-LNGSIPVSLGRINGLRSLDLSG-NKLTGSIPSISFPVLNVLDL 237 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~l 237 (431)
++|++|++++|.+.+..+..|.++++|++|++++|. ++...+..|.++++|++|++++ |.+++ ++...+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~f-------- 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDAL-------- 101 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTSE--------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHHh--------
Confidence 589999999999887666689999999999999997 8855556899999999999998 88884 433211
Q ss_pred CCCCCCCCcEEEccCCCCCCCCcccccCCCCcc---eeecCCC-CCCCCCCChhhhcCCCCCc-EEEeeCCcCCCCCchh
Q 036865 238 NQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQ---ALILKSN-SMGPITIPNYSFIGMRNLM-ILILSNMNLRGPIPES 312 (431)
Q Consensus 238 ~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~i~~~~~~~l~~L~-~L~L~~n~l~~~~p~~ 312 (431)
..+.+|++|++++|.+++ +|. +..+++|+ +|++++| .++ .++...|.++++|+ +|++++|+++ .+|..
T Consensus 102 --~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~--~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~ 174 (239)
T 2xwt_C 102 --KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT--SIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174 (239)
T ss_dssp --ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC--EECTTTTTTTBSSEEEEECCSCCCC-EECTT
T ss_pred --CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh--hcCcccccchhcceeEEEcCCCCCc-ccCHh
Confidence 123456667777777774 565 77888888 9999999 885 66666788999999 9999999999 55554
Q ss_pred cCCCCCCcEeeccccc-CCCCcchhhcCC-cCCcEEEccCCCCCCCCccchHHHhhccceEEcccCC
Q 036865 313 LGQLPNLHVLHLDENH-LNGSIPNSFKNL-KHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNS 377 (431)
Q Consensus 313 ~~~l~~L~~L~L~~N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np 377 (431)
....++|++|++++|+ +++..+..+..+ ++|++|++++|+++ .+|.. .+..+. .|++.++.
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~-~L~l~~~~ 237 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLK-ELIARNTW 237 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCS-EEECTTC-
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCc-eeeccCcc
Confidence 4344899999999995 986666788999 99999999999999 45654 345555 88888764
No 85
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=9e-21 Score=193.69 Aligned_cols=214 Identities=21% Similarity=0.281 Sum_probs=136.2
Q ss_pred CCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEE
Q 036865 134 YLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSL 213 (431)
Q Consensus 134 ~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 213 (431)
+|++|++++|.+ ..+|..+. ++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.+ +|++|
T Consensus 60 ~L~~L~Ls~n~L---~~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNL---SSLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCC---SCCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE
T ss_pred CccEEEeCCCCC---CccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEE
Confidence 355555555544 33554432 46777777777665 455 346777777777777774 665 544 77777
Q ss_pred EecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCC
Q 036865 214 DLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMR 293 (431)
Q Consensus 214 ~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~ 293 (431)
++++|.+++ +|. .++ +|+.|++++|.+++ +|. .+++|++|++++|.++ .+|. +. +
T Consensus 126 ~Ls~N~l~~-lp~-~l~-------------~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~--~lp~--l~--~ 180 (571)
T 3cvr_A 126 DVDNNQLTM-LPE-LPA-------------LLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT--FLPE--LP--E 180 (571)
T ss_dssp ECCSSCCSC-CCC-CCT-------------TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCCC--CC--T
T ss_pred ECCCCcCCC-CCC-cCc-------------cccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC--Ccch--hh--C
Confidence 777777764 443 333 44445555555553 444 4577888888888775 3554 33 7
Q ss_pred CCcEEEeeCCcCCCCCchhcCCCCCC-------cEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhh
Q 036865 294 NLMILILSNMNLRGPIPESLGQLPNL-------HVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWK 366 (431)
Q Consensus 294 ~L~~L~L~~n~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~ 366 (431)
+|+.|+|++|+|+ .+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus 181 ~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 181 SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp TCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 8888888888887 6666 543 66 88999999888 67887778899999999999998888888777654
Q ss_pred cc------ceEEccc-------CCCcccCCCCCCCCccc
Q 036865 367 MK------SKLRLHN-------NSGLCYNAGSDFEDGLD 392 (431)
Q Consensus 367 l~------~~l~l~~-------Np~~c~~~~~~~~~~~~ 392 (431)
.. ..+++++ || .|+|...|+.++..
T Consensus 256 ~~~~~~~~~~~~l~~~~~~~~~~p-~~~~~~~Wl~~~~~ 293 (571)
T 3cvr_A 256 QPDYHGPRIYFSMSDGQQNTLHRP-LADAVTAWFPENKQ 293 (571)
T ss_dssp SCC---CEEECCC----------C-CSHHHHTTCC----
T ss_pred CccccCCeeEEeeccccccccccc-chhhHHHHhhhhcc
Confidence 21 1233333 44 78888877766543
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=2.9e-23 Score=208.10 Aligned_cols=267 Identities=19% Similarity=0.149 Sum_probs=195.3
Q ss_pred EEEEEecCCCCCCCCCCCCCCCC----ccccccccCCCCCcEEEcCcccCCCCCCCChhhhc----ccccccEEEeecCC
Q 036865 100 HVVSLMFGALSDDTAFPTCDPTR----SHISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQ----LGQTLQTLVLRENG 171 (431)
Q Consensus 100 ~v~~l~l~~~~~~~~~~~~~~~~----~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~----l~~~L~~L~L~~n~ 171 (431)
+++.|++.+.. +. ..++..+.++++|++|++++|.+.. ..+..+.. ..++|++|++++|.
T Consensus 86 ~L~~L~L~~n~----------i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~--~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 86 KIQKLSLQNCC----------LTGAGCGVLSSTLRTLPTLQELHLSDNLLGD--AGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp CCCEEECTTSC----------CBGGGHHHHHHHTTSCTTCCEEECCSSBCHH--HHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred ceeEEEccCCC----------CCHHHHHHHHHHHccCCceeEEECCCCcCch--HHHHHHHHHHhcCCCcceEEECCCCC
Confidence 46677776542 22 2567888999999999999886421 11222222 11479999999998
Q ss_pred CCCC----CchhhcCCCCCCEEEeecccCCccCccccc-----CCCCCcEEEecCCcCCCC----CCCC--CCCCcCEEE
Q 036865 172 NVGP----IPSELGNLTRLKVLDLHKNNLNGSIPVSLG-----RINGLRSLDLSGNKLTGS----IPSI--SFPVLNVLD 236 (431)
Q Consensus 172 ~~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~~~~--~l~~L~~L~ 236 (431)
+.+. ++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++.. .+++|++|+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 8764 355677789999999999998754444443 366999999999988753 2322 578999999
Q ss_pred cCCCCC----------------CCCcEEEccCCCCCCC----CcccccCCCCcceeecCCCCCCCCC---CChhhhcCCC
Q 036865 237 LNQNLL----------------MDLILLDLSYNHLSGP----FPISIRNLNSLQALILKSNSMGPIT---IPNYSFIGMR 293 (431)
Q Consensus 237 l~~n~l----------------~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~---i~~~~~~~l~ 293 (431)
+++|.+ .+|++|++++|.+++. ++..+..+++|++|++++|.++... +........+
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence 999864 4899999999998853 5667778999999999999874111 1111112346
Q ss_pred CCcEEEeeCCcCCCC----CchhcCCCCCCcEeecccccCCCCcchhhcC-----CcCCcEEEccCCCCCC----CCccc
Q 036865 294 NLMILILSNMNLRGP----IPESLGQLPNLHVLHLDENHLNGSIPNSFKN-----LKHVSELRLNNNGLTG----PLPFE 360 (431)
Q Consensus 294 ~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~g----~ip~~ 360 (431)
+|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 999999999999865 4666777899999999999988655544432 6799999999999986 67777
Q ss_pred hHHHhhccceEEcccCCCc
Q 036865 361 REMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 361 ~~~l~~l~~~l~l~~Np~~ 379 (431)
+..+..++ .+++++|+..
T Consensus 394 l~~~~~L~-~L~l~~N~i~ 411 (461)
T 1z7x_W 394 LLANHSLR-ELDLSNNCLG 411 (461)
T ss_dssp HHHCCCCC-EEECCSSSCC
T ss_pred HHhCCCcc-EEECCCCCCC
Confidence 77777776 8999999754
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=6.8e-22 Score=192.14 Aligned_cols=236 Identities=19% Similarity=0.160 Sum_probs=174.1
Q ss_pred CCccccccccCCCCCcEEEcCcccCCCCCCCC-----hhhhcccc-cccEEEeecCCCCCCCchhhcCC-----CCCCEE
Q 036865 121 TRSHISRSITKLPYLRTLFFYRCFTHNPQPIP-----AFLGQLGQ-TLQTLVLRENGNVGPIPSELGNL-----TRLKVL 189 (431)
Q Consensus 121 ~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip-----~~i~~l~~-~L~~L~L~~n~~~~~~p~~~~~l-----~~L~~L 189 (431)
+.|.+|..+...++|++|++++|.+ ..++ ..+..+ + +|++|++++|.+.+..+..+..+ ++|++|
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~n~l---~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 85 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSLNNL---YSISTVELIQAFANT-PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSL 85 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTTSCG---GGSCHHHHHHHHHTC-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred chHHHHHHHhCCCCceEEEccCCCC---ChHHHHHHHHHHHhC-CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence 5666777677777799999999876 3443 556666 5 89999999999888777777765 999999
Q ss_pred EeecccCCccCcccc----cCC-CCCcEEEecCCcCCCCCCCC------C-CCCcCEEEcCCCCCC--------------
Q 036865 190 DLHKNNLNGSIPVSL----GRI-NGLRSLDLSGNKLTGSIPSI------S-FPVLNVLDLNQNLLM-------------- 243 (431)
Q Consensus 190 ~Ls~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~~~~------~-l~~L~~L~l~~n~l~-------------- 243 (431)
+|++|.+++..+..+ ..+ ++|++|++++|.+++..+.. . .++|++|++++|.++
T Consensus 86 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 86 NLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165 (362)
T ss_dssp ECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred ECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence 999999987666644 444 89999999999987543321 2 358999999988765
Q ss_pred --CCcEEEccCCCCCCCCcccc----cCC-CCcceeecCCCCCCCCC---CChhhhcC-CCCCcEEEeeCCcCCCCCc--
Q 036865 244 --DLILLDLSYNHLSGPFPISI----RNL-NSLQALILKSNSMGPIT---IPNYSFIG-MRNLMILILSNMNLRGPIP-- 310 (431)
Q Consensus 244 --~L~~L~ls~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~---i~~~~~~~-l~~L~~L~L~~n~l~~~~p-- 310 (431)
+|++|++++|.+++..+..+ ... ++|++|++++|.++... ++. .+.. .++|++|+|++|.+++..+
T Consensus 166 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCCCcHHHHH
Confidence 78899999998886665444 344 58999999999885211 222 2333 4689999999998886543
Q ss_pred --hhcCCCCCCcEeecccccCCCC-------cchhhcCCcCCcEEEccCCCCCCCCccch
Q 036865 311 --ESLGQLPNLHVLHLDENHLNGS-------IPNSFKNLKHVSELRLNNNGLTGPLPFER 361 (431)
Q Consensus 311 --~~~~~l~~L~~L~L~~N~l~~~-------~p~~l~~l~~L~~L~L~~N~l~g~ip~~~ 361 (431)
..+..+++|+.|++++|.+.+. ++..+..+++|++||+++|++.+..+..+
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 3456778899999999885432 23356678888889999998886655444
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3.3e-20 Score=176.17 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=159.6
Q ss_pred hhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCE
Q 036865 155 LGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNV 234 (431)
Q Consensus 155 i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 234 (431)
...+ ++|++|++++|.+.. +| .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+. +..
T Consensus 37 ~~~l-~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~~~------- 103 (308)
T 1h6u_A 37 QADL-DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-SAI------- 103 (308)
T ss_dssp HHHH-HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-GGG-------
T ss_pred HHHc-CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-hhh-------
Confidence 3455 789999999998764 55 68899999999999999984 555 99999999999999998843 321
Q ss_pred EEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcC
Q 036865 235 LDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLG 314 (431)
Q Consensus 235 L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 314 (431)
..+.+|++|++++|.+++ ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|++++ ++. +.
T Consensus 104 -----~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~--~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~ 170 (308)
T 1h6u_A 104 -----AGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQIT--NISP--LAGLTNLQYLSIGNAQVSD-LTP-LA 170 (308)
T ss_dssp -----TTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCC--CCGG--GGGCTTCCEEECCSSCCCC-CGG-GT
T ss_pred -----cCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccC--cCcc--ccCCCCccEEEccCCcCCC-Chh-hc
Confidence 134466667777777774 34 3889999999999999985 4443 7789999999999999995 444 88
Q ss_pred CCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCC
Q 036865 315 QLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNA 383 (431)
Q Consensus 315 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~ 383 (431)
.+++|+.|++++|.+++..+ +..+++|++|++++|++++..| +..+..+. .+++++|++.+.+.
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~-~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLF-IVTLTNQTITNQPV 234 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCC-EEEEEEEEEECCCE
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCC-EEEccCCeeecCCe
Confidence 99999999999999995543 8899999999999999996543 56667776 99999999866443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=178.14 Aligned_cols=204 Identities=23% Similarity=0.178 Sum_probs=157.0
Q ss_pred CCCCCcEEEcCcccCCCCCCCChhh--hcccccccEEEeecCCCCCCCc----hhhcCCCCCCEEEeecccCCccCcccc
Q 036865 131 KLPYLRTLFFYRCFTHNPQPIPAFL--GQLGQTLQTLVLRENGNVGPIP----SELGNLTRLKVLDLHKNNLNGSIPVSL 204 (431)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~ip~~i--~~l~~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~p~~l 204 (431)
.+++|++|++++|... +.+|..+ ..+ ++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+
T Consensus 89 ~~~~L~~L~l~~n~l~--~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 165 (310)
T 4glp_A 89 AYSRLKELTLEDLKIT--GTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV 165 (310)
T ss_dssp HHSCCCEEEEESCCCB--SCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred ccCceeEEEeeCCEec--cchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence 3567999999998653 4566665 666 899999999999987655 345689999999999999998888899
Q ss_pred cCCCCCcEEEecCCcCCCC--CC-CCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcc----cccCCCCcceeecCCC
Q 036865 205 GRINGLRSLDLSGNKLTGS--IP-SISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPI----SIRNLNSLQALILKSN 277 (431)
Q Consensus 205 ~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~----~l~~l~~L~~L~L~~n 277 (431)
.++++|++|++++|++.+. ++ ...+ ..+.+|++|++++|+++ .++. .+..+++|++|++++|
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~----------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCP----------HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCT----------TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTS
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhh----------hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCC
Confidence 9999999999999997642 11 1100 12334555666666665 2333 2577899999999999
Q ss_pred CCCCCCCChhhhcCC---CCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCC
Q 036865 278 SMGPITIPNYSFIGM---RNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 278 ~l~~~~i~~~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 354 (431)
.++ ...|. .+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 235 ~l~-~~~p~-~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 235 SLR-ATVNP-SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCC-CCCCS-CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCC-ccchh-hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 995 33343 23333 79999999999999 7787664 7999999999999954 44 688899999999999997
Q ss_pred C
Q 036865 355 G 355 (431)
Q Consensus 355 g 355 (431)
.
T Consensus 308 ~ 308 (310)
T 4glp_A 308 V 308 (310)
T ss_dssp C
T ss_pred C
Confidence 4
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.5e-22 Score=194.42 Aligned_cols=259 Identities=17% Similarity=0.162 Sum_probs=183.4
Q ss_pred CCCCCCccceEeCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCccccccccCC--CCCcEEEcCcccCCCCCCCChhhhc
Q 036865 80 DVCRGRWHGIECMPDKENVYHVVSLMFGALSDDTAFPTCDPTRSHISRSITKL--PYLRTLFFYRCFTHNPQPIPAFLGQ 157 (431)
Q Consensus 80 ~~C~~~w~gv~C~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l--~~L~~L~l~~~~~~~~~~ip~~i~~ 157 (431)
-.|. .|.++.|++. .++.+++.... .. +..+..+ +.++.|+++++.. ...+..+..
T Consensus 34 ~vc~-~W~~~~~~~~-----~~~~l~l~~~~----------~~---~~~~~~~~~~~l~~L~l~~n~l---~~~~~~~~~ 91 (336)
T 2ast_B 34 GVCK-RWYRLASDES-----LWQTLDLTGKN----------LH---PDVTGRLLSQGVIAFRCPRSFM---DQPLAEHFS 91 (336)
T ss_dssp SSCH-HHHHHHTCST-----TSSEEECTTCB----------CC---HHHHHHHHHTTCSEEECTTCEE---CSCCCSCCC
T ss_pred HHHH-HHHHHhcCch-----hheeecccccc----------CC---HHHHHhhhhccceEEEcCCccc---cccchhhcc
Confidence 3453 6999887532 24556665422 11 3456666 8899999998866 333344556
Q ss_pred ccccccEEEeecCCCCCC-CchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCC-cCCCC-CCCC--CCCCc
Q 036865 158 LGQTLQTLVLRENGNVGP-IPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGN-KLTGS-IPSI--SFPVL 232 (431)
Q Consensus 158 l~~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~~~~--~l~~L 232 (431)
+ ++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+.++++|++|++++| .+++. ++.. .++
T Consensus 92 ~-~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~-- 168 (336)
T 2ast_B 92 P-FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-- 168 (336)
T ss_dssp C-BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT--
T ss_pred C-CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC--
Confidence 6 7999999999987655 7778889999999999999988888888999999999999999 56531 2221 333
Q ss_pred CEEEcCCCCCCCCcEEEccCC-CCCCC-CcccccCCC-CcceeecCCC--CCCCCCCChhhhcCCCCCcEEEeeCCc-CC
Q 036865 233 NVLDLNQNLLMDLILLDLSYN-HLSGP-FPISIRNLN-SLQALILKSN--SMGPITIPNYSFIGMRNLMILILSNMN-LR 306 (431)
Q Consensus 233 ~~L~l~~n~l~~L~~L~ls~n-~l~~~-~p~~l~~l~-~L~~L~L~~n--~l~~~~i~~~~~~~l~~L~~L~L~~n~-l~ 306 (431)
+|++|++++| .+++. ++..+..++ +|++|++++| .++...++. .+..+++|++|++++|. ++
T Consensus 169 -----------~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 169 -----------RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp -----------TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCC
T ss_pred -----------CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCC
Confidence 4556666666 66643 566678888 9999999999 443233443 56678999999999998 77
Q ss_pred CCCchhcCCCCCCcEeeccccc-CCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCc
Q 036865 307 GPIPESLGQLPNLHVLHLDENH-LNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGL 379 (431)
Q Consensus 307 ~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~ 379 (431)
+..+..+..+++|++|++++|. +.......+.++++|+.|++++| ++. ..+..+......+++++|...
T Consensus 237 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSC
T ss_pred HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCc
Confidence 6777788889999999999995 33222236788999999999998 332 234444332237788877643
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=6.5e-20 Score=172.60 Aligned_cols=206 Identities=30% Similarity=0.314 Sum_probs=174.2
Q ss_pred cccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCC
Q 036865 128 SITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRI 207 (431)
Q Consensus 128 ~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 207 (431)
.+.+++++++++++++.. ..+|..+. +++++|++++|.+.+..|..|.++++|++|++++|.+++ ++.. ..+
T Consensus 5 ~~~~l~~l~~l~~~~~~l---~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l 76 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNL---TALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTL 76 (290)
T ss_dssp EEECSTTCCEEECTTSCC---SSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCC
T ss_pred cccccCCccEEECCCCCC---CcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCC
Confidence 467788999999988766 56776554 589999999999988778889999999999999999984 4443 789
Q ss_pred CCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChh
Q 036865 208 NGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNY 287 (431)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~ 287 (431)
++|++|++++|.+. .+|.. ...+.+|++|++++|++++..+..+..+++|++|++++|+++ .++..
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~-----------~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--~~~~~ 142 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLL-----------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK--TLPPG 142 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCC-----------TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC--CCCTT
T ss_pred CcCCEEECCCCcCC-cCchh-----------hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC--ccChh
Confidence 99999999999998 55542 123446677777888888666778999999999999999996 66666
Q ss_pred hhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCC
Q 036865 288 SFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGP 356 (431)
Q Consensus 288 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 356 (431)
.|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++...
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 7889999999999999999666666788999999999999999 7888888899999999999999754
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=9.9e-20 Score=176.04 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=86.0
Q ss_pred CCCCCccceEeCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCcEEEcCcccCCCCCCCChh-hhccc
Q 036865 81 VCRGRWHGIECMPDKENVYHVVSLMFGALSDDTAFPTCDPTRSHISRSITKLPYLRTLFFYRCFTHNPQPIPAF-LGQLG 159 (431)
Q Consensus 81 ~C~~~w~gv~C~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~-i~~l~ 159 (431)
.|.|.|..|.|.... ..++|..+ .+++++|+|++|.+ ..||.. +..+
T Consensus 6 ~C~C~~~~v~C~~~~--------------------------Lt~iP~~l--~~~l~~L~Ls~N~i---~~i~~~~f~~l- 53 (350)
T 4ay9_X 6 ICHCSNRVFLCQESK--------------------------VTEIPSDL--PRNAIELRFVLTKL---RVIQKGAFSGF- 53 (350)
T ss_dssp SSEEETTEEEEESTT--------------------------CCSCCTTC--CTTCSEEEEESCCC---SEECTTSSTTC-
T ss_pred ccEeeCCEEEecCCC--------------------------CCccCcCc--CCCCCEEEccCCcC---CCcCHHHHcCC-
Confidence 476788889996321 12344444 35789999999877 677764 5667
Q ss_pred ccccEEEeecCCCCCCCch-hhcCCCCCCE-EEeecccCCccCcccccCCCCCcEEEecCCcCCCCCC
Q 036865 160 QTLQTLVLRENGNVGPIPS-ELGNLTRLKV-LDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIP 225 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 225 (431)
++|++|+|++|.+.+.+|. .|.++++|++ +.++.|+++...|..|.++++|++|++++|++....+
T Consensus 54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc
Confidence 8999999999998777764 5788988775 6667788987777889999999999999999984433
No 93
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=2e-22 Score=202.03 Aligned_cols=204 Identities=23% Similarity=0.162 Sum_probs=95.7
Q ss_pred ccccccCCCCCcEEEcCcccCCCCCCCChhhhcccc----cccEEEeecCCCCC----CCchhhcCCCCCCEEEeecccC
Q 036865 125 ISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQ----TLQTLVLRENGNVG----PIPSELGNLTRLKVLDLHKNNL 196 (431)
Q Consensus 125 l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~----~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~Ls~n~l 196 (431)
++..+..+++|++|++++|.+. ...+..+....+ +|++|++++|.+.. .++..+.++++|++|++++|.+
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCH--HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred HHHHHHhCCCcCEEeCCCCcCC--hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 3444555566666666555331 111112222112 46666666665542 3355555666666666666655
Q ss_pred CccCccccc-----CCCCCcEEEecCCcCCCCC----CCC--CCCCcCEEEcCCCCCC----------------CCcEEE
Q 036865 197 NGSIPVSLG-----RINGLRSLDLSGNKLTGSI----PSI--SFPVLNVLDLNQNLLM----------------DLILLD 249 (431)
Q Consensus 197 ~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~----~~~--~l~~L~~L~l~~n~l~----------------~L~~L~ 249 (431)
++..+..+. ..++|++|++++|.+++.. +.. .+++|++|++++|.+. +|++|+
T Consensus 126 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence 432222221 2345666666666554321 111 2455666666655432 556666
Q ss_pred ccCCCCCCC----CcccccCCCCcceeecCCCCCCCCC---CChhhhcCCCCCcEEEeeCCcCCCC----CchhcCCCCC
Q 036865 250 LSYNHLSGP----FPISIRNLNSLQALILKSNSMGPIT---IPNYSFIGMRNLMILILSNMNLRGP----IPESLGQLPN 318 (431)
Q Consensus 250 ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~---i~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~ 318 (431)
+++|.+++. ++..+..+++|++|++++|.++... +....+..+++|++|++++|++++. ++..+..+++
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 285 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC
Confidence 666655542 3444455555666666555542110 0011112345555555555555432 3333444455
Q ss_pred CcEeecccccCC
Q 036865 319 LHVLHLDENHLN 330 (431)
Q Consensus 319 L~~L~L~~N~l~ 330 (431)
|++|++++|.++
T Consensus 286 L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 286 LKELSLAGNELG 297 (461)
T ss_dssp CCEEECTTCCCH
T ss_pred cceEECCCCCCc
Confidence 555555555444
No 94
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.82 E-value=2.8e-20 Score=164.23 Aligned_cols=175 Identities=21% Similarity=0.271 Sum_probs=139.6
Q ss_pred cEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCCh-hhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeec
Q 036865 246 ILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPN-YSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHL 324 (431)
Q Consensus 246 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 324 (431)
+.+++++|+++ .+|..+.. +|++|++++|.++ .++. ..+..+++|++|+|++|++++..|..+..+++|++|+|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCC--ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 45667777775 56655433 7888888888885 3333 24778899999999999999888888999999999999
Q ss_pred ccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCccccc-cCCCCCCCC
Q 036865 325 DENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSS-IDSGIGLCE 403 (431)
Q Consensus 325 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~-~~~~~~~C~ 403 (431)
++|++++..+..+.++++|++|+|++|++++..|..+..+..+. .+++++|++.|+|...|+..|+... .......|.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT-SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG 164 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC-EEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC-EEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCC
Confidence 99999987777888999999999999999988888888887776 8999999999999988887776542 334577899
Q ss_pred CCCCCCCCccccccccccccccc
Q 036865 404 SGKPGSANSVQHLGTLEENITGT 426 (431)
Q Consensus 404 ~~~~~~~~~l~~l~~~~~~~~~~ 426 (431)
.|.....+.+..++..+..+.+.
T Consensus 165 ~P~~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 165 APSKVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp SSTTTTTSBGGGSCTTTCCCCCC
T ss_pred CChHHcCCChhhCcHhhcCcCCC
Confidence 88888888888888666555543
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=9.8e-20 Score=176.84 Aligned_cols=185 Identities=24% Similarity=0.226 Sum_probs=126.6
Q ss_pred cEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCccccc-CCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCC
Q 036865 163 QTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLG-RINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNL 241 (431)
Q Consensus 163 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~ 241 (431)
++++++++.+. .+|..+. ..+++|+|++|++++..+..+. ++++|++|+|++|.+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i--------------------- 76 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--------------------- 76 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC---------------------
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC---------------------
Confidence 45566555544 3444332 3455666666665544444444 555555555555544
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcE
Q 036865 242 LMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHV 321 (431)
Q Consensus 242 l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 321 (431)
++..+..+.++++|++|+|++|+++ .++...|..+++|++|+|++|++.+..|..+..+++|+.
T Consensus 77 --------------~~i~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 77 --------------NFISSEAFVPVPNLRYLDLSSNHLH--TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp --------------CEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred --------------CccChhhccCCCCCCEEECCCCcCC--cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence 4334456777888888888888875 555556788889999999999998777888889999999
Q ss_pred eecccccCCCCcchhh---cCCcCCcEEEccCCCCCCCCccchHHHhhc-cceEEcccCCCcccCCCCCC
Q 036865 322 LHLDENHLNGSIPNSF---KNLKHVSELRLNNNGLTGPLPFEREMVWKM-KSKLRLHNNSGLCYNAGSDF 387 (431)
Q Consensus 322 L~L~~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l-~~~l~l~~Np~~c~~~~~~~ 387 (431)
|+|++|++++..+..+ ..+++|+.|+|++|++++..+..+..+..+ ...+++++|||.|+|...++
T Consensus 141 L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~ 210 (361)
T 2xot_A 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQL 210 (361)
T ss_dssp EECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHH
T ss_pred EECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHH
Confidence 9999999995444444 578999999999999995444455555443 23799999999999986553
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=4.1e-21 Score=186.66 Aligned_cols=238 Identities=19% Similarity=0.129 Sum_probs=178.8
Q ss_pred EEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCc----hhhcCCC-CCCEEEeecccCCccCcccccCC-----
Q 036865 138 LFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIP----SELGNLT-RLKVLDLHKNNLNGSIPVSLGRI----- 207 (431)
Q Consensus 138 L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l----- 207 (431)
+.++.+... +.+|..+... ++|++|++++|.+.+..+ ..+.+++ +|++|+|++|.+++..+..+..+
T Consensus 3 ~~ls~n~~~--~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGS--NPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTC--CHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccch--HHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 455555442 4556655554 679999999999887666 6788898 99999999999997777777665
Q ss_pred CCCcEEEecCCcCCCCCCCC------CC-CCcCEEEcCCCCC----------------CCCcEEEccCCCCCCCCc----
Q 036865 208 NGLRSLDLSGNKLTGSIPSI------SF-PVLNVLDLNQNLL----------------MDLILLDLSYNHLSGPFP---- 260 (431)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~------~l-~~L~~L~l~~n~l----------------~~L~~L~ls~n~l~~~~p---- 260 (431)
++|++|++++|.+++..+.. .+ ++|++|++++|++ ++|++|++++|.+++..+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 99999999999998654432 33 7999999999964 389999999999986443
Q ss_pred ccccCCC-CcceeecCCCCCCCCCCChh----hhcCC-CCCcEEEeeCCcCCCC----CchhcCC-CCCCcEeecccccC
Q 036865 261 ISIRNLN-SLQALILKSNSMGPITIPNY----SFIGM-RNLMILILSNMNLRGP----IPESLGQ-LPNLHVLHLDENHL 329 (431)
Q Consensus 261 ~~l~~l~-~L~~L~L~~n~l~~~~i~~~----~~~~l-~~L~~L~L~~n~l~~~----~p~~~~~-l~~L~~L~L~~N~l 329 (431)
..+..++ +|++|++++|+++ ..... .+... ++|++|+|++|++++. ++..+.. .++|++|+|++|.+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLA--SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGG--GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHhcCCccccEeeecCCCCc--hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 3445555 9999999999985 22221 34445 5999999999999863 4555554 45999999999999
Q ss_pred CCCcc----hhhcCCcCCcEEEccCCCCCCCCccchHHH-------hhccceEEcccCCCccc
Q 036865 330 NGSIP----NSFKNLKHVSELRLNNNGLTGPLPFEREMV-------WKMKSKLRLHNNSGLCY 381 (431)
Q Consensus 330 ~~~~p----~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l-------~~l~~~l~l~~Np~~c~ 381 (431)
++..+ ..+..+++|+.|++++|.+.+..+..+..+ ..+. .+++++|+....
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~-~LdL~~N~l~~~ 299 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII-LVDKNGKEIHPS 299 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE-EECTTSCBCCGG
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE-EEecCCCcCCCc
Confidence 97544 345778999999999999765444433332 2343 799999986544
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=3.9e-20 Score=177.49 Aligned_cols=222 Identities=21% Similarity=0.218 Sum_probs=168.5
Q ss_pred CCcEEEcCcccCCCCCCCChhhhcc-cccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCcc-CcccccCCCCCc
Q 036865 134 YLRTLFFYRCFTHNPQPIPAFLGQL-GQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGS-IPVSLGRINGLR 211 (431)
Q Consensus 134 ~L~~L~l~~~~~~~~~~ip~~i~~l-~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~ 211 (431)
.++.++++++... +..+..+ .++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+.++++|+
T Consensus 48 ~~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 48 LWQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TSSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hheeeccccccCC-----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 4788999876442 3444433 15799999999988776654 56799999999999998865 788889999999
Q ss_pred EEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCC-CCCC-CCcccccCCCCcceeecCCC-CCCCCCCChhh
Q 036865 212 SLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYN-HLSG-PFPISIRNLNSLQALILKSN-SMGPITIPNYS 288 (431)
Q Consensus 212 ~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n-~l~~-~~p~~l~~l~~L~~L~L~~n-~l~~~~i~~~~ 288 (431)
+|++++|.+.+..+.. + ..+.+|++|++++| .+++ .++..+.++++|++|++++| .++...++. .
T Consensus 122 ~L~L~~~~l~~~~~~~-l----------~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~ 189 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNT-L----------AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-A 189 (336)
T ss_dssp EEECTTCBCCHHHHHH-H----------TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-H
T ss_pred EEeCcCcccCHHHHHH-H----------hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-H
Confidence 9999999877543322 0 11345666666666 5664 25666888999999999999 874222333 5
Q ss_pred hcCCC-CCcEEEeeCC--cCC-CCCchhcCCCCCCcEeeccccc-CCCCcchhhcCCcCCcEEEccCCCCCCCCcc---c
Q 036865 289 FIGMR-NLMILILSNM--NLR-GPIPESLGQLPNLHVLHLDENH-LNGSIPNSFKNLKHVSELRLNNNGLTGPLPF---E 360 (431)
Q Consensus 289 ~~~l~-~L~~L~L~~n--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~---~ 360 (431)
+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +..+. .
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~ 267 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLE 267 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGGGGG
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHHHHH
Confidence 67789 9999999999 555 4567777889999999999999 777778889999999999999995 23343 4
Q ss_pred hHHHhhccceEEcccC
Q 036865 361 REMVWKMKSKLRLHNN 376 (431)
Q Consensus 361 ~~~l~~l~~~l~l~~N 376 (431)
+..++.++ .|++++|
T Consensus 268 l~~~~~L~-~L~l~~~ 282 (336)
T 2ast_B 268 LGEIPTLK-TLQVFGI 282 (336)
T ss_dssp GGGCTTCC-EEECTTS
T ss_pred HhcCCCCC-EEeccCc
Confidence 55566666 9999988
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=3.4e-19 Score=161.76 Aligned_cols=166 Identities=21% Similarity=0.229 Sum_probs=139.3
Q ss_pred CCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhh
Q 036865 209 GLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYS 288 (431)
Q Consensus 209 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~ 288 (431)
.-+.++.+++++. .+|.... .+|++|++++|.+++..|..+..+++|++|++++|+++ .++...
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~-------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~ 83 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP-------------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG--ALPVGV 83 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC-------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTT
T ss_pred eCCEeEccCCCcC-ccCCCCC-------------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC--CcChhh
Confidence 3567888888877 5665433 35667777888888877888999999999999999995 677667
Q ss_pred hcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhcc
Q 036865 289 FIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMK 368 (431)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~ 368 (431)
|..+++|++|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+..+.
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 889999999999999999777777899999999999999999 7888999999999999999999966555677777776
Q ss_pred ceEEcccCCCcccCC-CCCCCCccc
Q 036865 369 SKLRLHNNSGLCYNA-GSDFEDGLD 392 (431)
Q Consensus 369 ~~l~l~~Np~~c~~~-~~~~~~~~~ 392 (431)
.+++++||+.|+|. ..++..|+.
T Consensus 163 -~L~l~~N~~~c~c~~~~~l~~~~~ 186 (229)
T 3e6j_A 163 -HAYLFGNPWDCECRDIMYLRNWVA 186 (229)
T ss_dssp -EEECTTSCBCTTBGGGHHHHHHHH
T ss_pred -EEEeeCCCccCCcchhHHHHHHHH
Confidence 99999999999996 555555553
No 99
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=160.26 Aligned_cols=169 Identities=20% Similarity=0.229 Sum_probs=135.5
Q ss_pred cEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecc
Q 036865 246 ILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLD 325 (431)
Q Consensus 246 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 325 (431)
+.+++++|.++ .+|..+ .++|++|++++|.++ .++. .|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~--~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT--LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC--SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc--hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 34666666666 455544 257888999999885 5663 68888999999999999997777888999999999999
Q ss_pred cccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCcccccc-CCCCCCCCC
Q 036865 326 ENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSI-DSGIGLCES 404 (431)
Q Consensus 326 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~-~~~~~~C~~ 404 (431)
+|++++..+..|..+++|++|+|++|++++..+..+..+..+. .+++++|||.|+|...|+..|+.... ......|..
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~ 165 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS-HLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAG 165 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC-EEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc-EEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCC
Confidence 9999987777899999999999999999954444566677776 99999999999999999998886533 345678999
Q ss_pred CCCCCCCcccccccccc
Q 036865 405 GKPGSANSVQHLGTLEE 421 (431)
Q Consensus 405 ~~~~~~~~l~~l~~~~~ 421 (431)
|.....+.+..++..+.
T Consensus 166 P~~l~g~~l~~~~~~~~ 182 (193)
T 2wfh_A 166 PGEMADKLLLTTPSKKF 182 (193)
T ss_dssp SGGGTTCBTTTSCGGGC
T ss_pred chHHCCCCcccCChHHe
Confidence 88888888888775543
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5.6e-19 Score=157.73 Aligned_cols=180 Identities=24% Similarity=0.290 Sum_probs=140.5
Q ss_pred ccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCC
Q 036865 162 LQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNL 241 (431)
Q Consensus 162 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~ 241 (431)
-+.++.+++.+. .+|..+ .++|++|++++|++++..+..+.++++|++|++++|.+++ ++...+ ..
T Consensus 9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~----------~~ 74 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVF----------NK 74 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTT----------TT
T ss_pred CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhc----------CC
Confidence 456777777655 455444 4689999999999996666678899999999999999984 333221 12
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcE
Q 036865 242 LMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHV 321 (431)
Q Consensus 242 l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 321 (431)
+.+|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++
T Consensus 75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ--SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc--ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 346666777777777655666788999999999999985 566656788999999999999999766667888999999
Q ss_pred eecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHH
Q 036865 322 LHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMV 364 (431)
Q Consensus 322 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l 364 (431)
|++++|.+.+ .+++|++|+++.|+++|.+|..++.+
T Consensus 153 L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 153 IWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp EECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred EEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 9999998774 35678999999999999999876543
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=3.1e-18 Score=174.96 Aligned_cols=179 Identities=25% Similarity=0.333 Sum_probs=147.7
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
.+|++|++++|.+.+ +|..+ .++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +..
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~--l~~-------- 120 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE--LPA-------- 120 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--CCT--------
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--hhc--------
Confidence 389999999999876 77766 389999999999999 778 457999999999999985 655 221
Q ss_pred CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCC
Q 036865 240 NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNL 319 (431)
Q Consensus 240 n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 319 (431)
+|++|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|+|++|++++ +|. +. ++|
T Consensus 121 ----~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~--~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L 182 (571)
T 3cvr_A 121 ----SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT--MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESL 182 (571)
T ss_dssp ----TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTC
T ss_pred ----CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC--cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCC
Confidence 56777778888875 665 6899999999999996 4664 47899999999999996 777 65 899
Q ss_pred cEeecccccCCCCcchhhcCCcCC-------cEEEccCCCCCCCCccchHHHhhccceEEcccCCCcc
Q 036865 320 HVLHLDENHLNGSIPNSFKNLKHV-------SELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLC 380 (431)
Q Consensus 320 ~~L~L~~N~l~~~~p~~l~~l~~L-------~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c 380 (431)
+.|+|++|.++ .+|. +.. +| +.|+|++|+++ .+|..+..+..+. .|++++|+..+
T Consensus 183 ~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~-~L~L~~N~l~~ 244 (571)
T 3cvr_A 183 EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC-TIILEDNPLSS 244 (571)
T ss_dssp CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTE-EEECCSSSCCH
T ss_pred CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCC-EEEeeCCcCCC
Confidence 99999999999 6776 554 77 99999999999 6899888877776 99999998754
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=7.8e-19 Score=169.71 Aligned_cols=232 Identities=19% Similarity=0.206 Sum_probs=168.3
Q ss_pred cEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcc-cccCCCCCcE-E
Q 036865 136 RTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPV-SLGRINGLRS-L 213 (431)
Q Consensus 136 ~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~-L 213 (431)
++++.+++.. ..||..+. +++++|+|++|.+....+..|.++++|++|+|++|++.+.+|. .|.+++++++ +
T Consensus 12 ~~v~C~~~~L---t~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQESKV---TEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEESTTC---CSCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEecCCCC---CccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 4556555444 67887653 6899999999998754445799999999999999998766664 6788998876 5
Q ss_pred EecCCcCCCCCCCC--CCCCcCEEEcCCCCCC-----------CCcEEEccC-CCCCCCCcccccCCC-CcceeecCCCC
Q 036865 214 DLSGNKLTGSIPSI--SFPVLNVLDLNQNLLM-----------DLILLDLSY-NHLSGPFPISIRNLN-SLQALILKSNS 278 (431)
Q Consensus 214 ~L~~n~l~~~~~~~--~l~~L~~L~l~~n~l~-----------~L~~L~ls~-n~l~~~~p~~l~~l~-~L~~L~L~~n~ 278 (431)
.+..|+++...+.. .+++|+.|++++|++. ++..+++.+ +.+....+..+..+. .++.|++++|+
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 66678888544544 6899999999998765 566788765 456544444566654 68899999999
Q ss_pred CCCCCCChhhhcCCCCCcEEEeeC-CcCCCCCc-hhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCC
Q 036865 279 MGPITIPNYSFIGMRNLMILILSN-MNLRGPIP-ESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGP 356 (431)
Q Consensus 279 l~~~~i~~~~~~~l~~L~~L~L~~-n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 356 (431)
++ .++...|. ..+|++|++.+ |.++ .+| ..|..+++|++|++++|+++ .+|. ..+.+|+.|.+.++.-...
T Consensus 166 i~--~i~~~~f~-~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 166 IQ--EIHNSAFN-GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKK 238 (350)
T ss_dssp CC--EECTTSST-TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCC
T ss_pred cc--CCChhhcc-ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCc
Confidence 86 56665443 56899999985 5666 555 56789999999999999999 4554 2355667777666644447
Q ss_pred CccchHHHhhccceEEcccCCCcccCC
Q 036865 357 LPFEREMVWKMKSKLRLHNNSGLCYNA 383 (431)
Q Consensus 357 ip~~~~~l~~l~~~l~l~~Np~~c~~~ 383 (431)
+|. +..+..+. .+++. |++.|.+-
T Consensus 239 lP~-l~~l~~L~-~l~l~-~~~~c~~~ 262 (350)
T 4ay9_X 239 LPT-LEKLVALM-EASLT-YPSHCCAF 262 (350)
T ss_dssp CCC-TTTCCSCC-EEECS-CHHHHHHH
T ss_pred CCC-chhCcChh-hCcCC-CCccccch
Confidence 773 55666665 77875 56777653
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.5e-18 Score=160.78 Aligned_cols=169 Identities=24% Similarity=0.333 Sum_probs=91.7
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
++|++|++++|.+.. ++ .+..+++|++|++++|++++ ++. +.++++|++|++++|.+.+ ++..
T Consensus 46 ~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~l------------ 108 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LSSL------------ 108 (291)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GGGG------------
T ss_pred CcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Chhh------------
Confidence 445555555554432 22 24455555555555555553 222 5555555555555555542 1111
Q ss_pred CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCC
Q 036865 240 NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNL 319 (431)
Q Consensus 240 n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 319 (431)
..+.+|++|++++|.+++ + ..+..+++|+.|++++|+++ .+ ..+..+++|+.|++++|++++..+ +..+++|
T Consensus 109 ~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~--~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L 180 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT--DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 180 (291)
T ss_dssp TTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC--CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCC--cc--hhhccCCCCCEEEccCCccccchh--hcCCCcc
Confidence 112233333444444442 2 34556666777777777664 22 245666777777777777764433 6667777
Q ss_pred cEeecccccCCCCcchhhcCCcCCcEEEccCCCCCC
Q 036865 320 HVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTG 355 (431)
Q Consensus 320 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 355 (431)
++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 181 ~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 777777777763 33 36667777777777776663
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=5.8e-18 Score=152.62 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=112.7
Q ss_pred cEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCc-ccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCC
Q 036865 163 QTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIP-VSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNL 241 (431)
Q Consensus 163 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~ 241 (431)
+++++++|.+. .+|..+. ..+++|++++|.+++..+ ..|.++++|++|++++|.++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-------------------- 70 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------------------- 70 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------------
Confidence 45666666544 3454332 234566666666654333 23455555555555555544
Q ss_pred CCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcE
Q 036865 242 LMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHV 321 (431)
Q Consensus 242 l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 321 (431)
+..+..+.++++|++|++++|.++ .++...|.++++|++|+|++|++++..|..+..+++|++
T Consensus 71 ---------------~i~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 71 ---------------DIEEGAFEGASGVNEILLTSNRLE--NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp ---------------EECTTTTTTCTTCCEEECCSSCCC--CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ---------------EECHHHhCCCCCCCEEECCCCccC--ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 333456777888888888888875 555556888889999999999998777888889999999
Q ss_pred eecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCcc
Q 036865 322 LHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPF 359 (431)
Q Consensus 322 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~ 359 (431)
|+|++|++++..|..+..+++|+.|++++|++.+..+.
T Consensus 134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred EECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999999987788899999999999999999876553
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=5e-18 Score=159.74 Aligned_cols=174 Identities=25% Similarity=0.310 Sum_probs=139.6
Q ss_pred ccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCC
Q 036865 129 ITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRIN 208 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 208 (431)
+.++++|++|++++|.+ ..++. +..+ ++|++|++++|.+.+..+ +.++++|++|++++|.+++ ++ .+..++
T Consensus 42 ~~~l~~L~~L~l~~~~i---~~~~~-~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDI---KSVQG-IQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTSCC---CCCTT-GGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCT
T ss_pred hhhcCcccEEEccCCCc---ccChh-HhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCC
Confidence 45688999999998876 45543 6777 899999999999876444 8999999999999999984 44 489999
Q ss_pred CCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhh
Q 036865 209 GLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYS 288 (431)
Q Consensus 209 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~ 288 (431)
+|++|++++|.+.+. +.. ..+.+|+.|++++|.+++. ..+..+++|++|++++|.++ .++.
T Consensus 113 ~L~~L~L~~n~i~~~-~~l------------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~--~~~~-- 173 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI-NGL------------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS--DIVP-- 173 (291)
T ss_dssp TCCEEECTTSCCCCC-GGG------------GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC--CCGG--
T ss_pred CCCEEECCCCcCCCC-hhh------------cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc--cchh--
Confidence 999999999998853 321 1234566666777777743 57889999999999999985 3443
Q ss_pred hcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCC
Q 036865 289 FIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGS 332 (431)
Q Consensus 289 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 332 (431)
+..+++|+.|++++|.+++ ++. +..+++|+.|++++|+++..
T Consensus 174 l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcCCcccCC
Confidence 7889999999999999995 554 88999999999999999853
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.4e-17 Score=150.12 Aligned_cols=154 Identities=25% Similarity=0.404 Sum_probs=112.5
Q ss_pred cEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCC
Q 036865 163 QTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLL 242 (431)
Q Consensus 163 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l 242 (431)
+.++++++.+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i---------------------- 68 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI---------------------- 68 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC----------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC----------------------
Confidence 44555555443 3444332 4555566666555544344455555555555555544
Q ss_pred CCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEe
Q 036865 243 MDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVL 322 (431)
Q Consensus 243 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 322 (431)
++..|..+.++++|++|++++|.++ .++...|.++++|++|+|++|++++..|..+..+++|++|
T Consensus 69 -------------~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 69 -------------SELAPDAFQGLRSLNSLVLYGNKIT--ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp -------------CEECTTTTTTCSSCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred -------------CCcCHHHhhCCcCCCEEECCCCcCC--ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence 4445667788889999999999886 6676678889999999999999998888889999999999
Q ss_pred ecccccCCCCcchhhcCCcCCcEEEccCCCCCCC
Q 036865 323 HLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGP 356 (431)
Q Consensus 323 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 356 (431)
+|++|++++..+..+..+++|+.|++++|++...
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 9999999977777889999999999999998764
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=6.7e-18 Score=163.86 Aligned_cols=175 Identities=27% Similarity=0.232 Sum_probs=102.3
Q ss_pred EEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhc-CCCCCCEEEeecccCCccCcccccCCCCCcEEEe
Q 036865 137 TLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELG-NLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDL 215 (431)
Q Consensus 137 ~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 215 (431)
+++++++.. ..+|..+. +.+++|+|++|.+.+..+..+. ++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 22 ~l~c~~~~l---~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 22 ILSCSKQQL---PNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp EEECCSSCC---SSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEEeCCCCc---CccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 344444433 45565443 4688899999988776666676 8999999999999999766678899999999999
Q ss_pred cCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhh---cCC
Q 036865 216 SGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSF---IGM 292 (431)
Q Consensus 216 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~---~~l 292 (431)
++|.++. ++...+. .+.+|++|++++|.+.+..+..+..+++|++|+|++|.++ .++...| ..+
T Consensus 96 s~N~l~~-~~~~~~~----------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~~~~l 162 (361)
T 2xot_A 96 SSNHLHT-LDEFLFS----------DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS--RFPVELIKDGNKL 162 (361)
T ss_dssp CSSCCCE-ECTTTTT----------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--SCCGGGTC----C
T ss_pred CCCcCCc-CCHHHhC----------CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC--eeCHHHhcCcccC
Confidence 9988873 2221111 1223444444455555444455555566666666666554 3443333 234
Q ss_pred CCCcEEEeeCCcCCCCCchhcCCCCC--CcEeecccccCC
Q 036865 293 RNLMILILSNMNLRGPIPESLGQLPN--LHVLHLDENHLN 330 (431)
Q Consensus 293 ~~L~~L~L~~n~l~~~~p~~~~~l~~--L~~L~L~~N~l~ 330 (431)
++|+.|+|++|++++..+..+..++. ++.|+|++|.+.
T Consensus 163 ~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 45555555555554332233333333 244444444443
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.5e-17 Score=169.80 Aligned_cols=169 Identities=23% Similarity=0.320 Sum_probs=93.3
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
++|+.|++++|.+.. +| .+..+++|+.|+|++|.+.+. +. +..+++|++|+|++|.+.+ ++..
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l~~l------------ 105 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-LSSL------------ 105 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CTTS------------
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-Chhh------------
Confidence 455555555555432 22 355556666666666655532 22 5556666666666665553 2211
Q ss_pred CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCC
Q 036865 240 NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNL 319 (431)
Q Consensus 240 n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 319 (431)
..+.+|+.|++++|.+.+ + +.+..+++|+.|+|++|.++ .+ ..+..+++|+.|+|++|++.+..| +..+++|
T Consensus 106 ~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~--~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L 177 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT--DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 177 (605)
T ss_dssp TTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCC--CC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccC--Cc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC
Confidence 112233344444444442 2 24556666666666666664 22 245666666777777766665444 5666667
Q ss_pred cEeecccccCCCCcchhhcCCcCCcEEEccCCCCCC
Q 036865 320 HVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTG 355 (431)
Q Consensus 320 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 355 (431)
+.|+|++|++++ ++ .+..+++|+.|+|++|++.+
T Consensus 178 ~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 178 QNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred CEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 777777776664 22 46666677777777766664
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=7e-17 Score=146.41 Aligned_cols=157 Identities=23% Similarity=0.304 Sum_probs=116.7
Q ss_pred cccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCC
Q 036865 161 TLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQN 240 (431)
Q Consensus 161 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 240 (431)
..+.++.+++.+. .+|..+. ++|++|+|++|.+++..|..+.++++|++|++++|.+. .
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~----------------- 78 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-A----------------- 78 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-C-----------------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-C-----------------
Confidence 4566777766544 5565443 67777777777777666667777777777777777664 2
Q ss_pred CCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCc
Q 036865 241 LLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLH 320 (431)
Q Consensus 241 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 320 (431)
..+..+..+++|+.|++++|+++ .++...|..+++|++|+|++|+++ .+|..+..+++|+
T Consensus 79 -----------------i~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 138 (229)
T 3e6j_A 79 -----------------LPVGVFDSLTQLTVLDLGTNQLT--VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLT 138 (229)
T ss_dssp -----------------CCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCS
T ss_pred -----------------cChhhcccCCCcCEEECCCCcCC--ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCC
Confidence 22234566777888888888775 555556777888888888888888 7788888889999
Q ss_pred EeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCc
Q 036865 321 VLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLP 358 (431)
Q Consensus 321 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 358 (431)
+|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 139 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 139 HLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred EEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99999999996666778889999999999999987654
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.3e-17 Score=169.00 Aligned_cols=173 Identities=25% Similarity=0.336 Sum_probs=120.8
Q ss_pred ccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCC
Q 036865 129 ITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRIN 208 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 208 (431)
+..+++|+.|++++|.+ ..++ .+..+ ++|++|+|++|.+.+..| +..+++|++|+|++|.+.+ +| .+..++
T Consensus 39 ~~~L~~L~~L~l~~n~i---~~l~-~l~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDI---KSVQ-GIQYL-PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTTCCC---CCCT-TGGGC-TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCT
T ss_pred hhcCCCCCEEECcCCCC---CCCh-HHccC-CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCC
Confidence 44677788888887765 4444 46666 788888888887775443 7788888888888888873 44 678888
Q ss_pred CCcEEEecCCcCCCCCCCC-CCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChh
Q 036865 209 GLRSLDLSGNKLTGSIPSI-SFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNY 287 (431)
Q Consensus 209 ~L~~L~L~~n~l~~~~~~~-~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~ 287 (431)
+|++|+|++|.+.+ ++.. .++ +|+.|+|++|.+++. ..+..+++|+.|+|++|.++ .++.
T Consensus 110 ~L~~L~Ls~N~l~~-l~~l~~l~-------------~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~--~~~~- 170 (605)
T 1m9s_A 110 KLKSLSLEHNGISD-INGLVHLP-------------QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS--DIVP- 170 (605)
T ss_dssp TCCEEECTTSCCCC-CGGGGGCT-------------TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC--CCGG-
T ss_pred CCCEEEecCCCCCC-CccccCCC-------------ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC--Cchh-
Confidence 88888888888774 2221 333 445555555555543 46777788888888888774 3332
Q ss_pred hhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCC
Q 036865 288 SFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGS 332 (431)
Q Consensus 288 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 332 (431)
+..+++|+.|+|++|++++ +| .+..+++|+.|+|++|.+.+.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred -hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 6677888888888888874 33 477778888888888877754
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=5.2e-17 Score=143.69 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=84.2
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
++|++|++++|.+. .+| .+..+++|++|++++|.++ . +..+..+++|++|++++|.++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~------------------ 101 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVT------------------ 101 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCB------------------
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccC------------------
Confidence 45556666555544 334 4555555555555555443 2 224555555555555555444
Q ss_pred CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCc-CCCCCchhcCCCCC
Q 036865 240 NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMN-LRGPIPESLGQLPN 318 (431)
Q Consensus 240 n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~ 318 (431)
+..+..+..+++|++|++++|.++ ...+ ..+..+++|++|++++|. ++ .+| .+..+++
T Consensus 102 -----------------~~~~~~l~~l~~L~~L~Ls~n~i~-~~~~-~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~ 160 (197)
T 4ezg_A 102 -----------------SDKIPNLSGLTSLTLLDISHSAHD-DSIL-TKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPE 160 (197)
T ss_dssp -----------------GGGSCCCTTCTTCCEEECCSSBCB-GGGH-HHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSS
T ss_pred -----------------cccChhhcCCCCCCEEEecCCccC-cHhH-HHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCC
Confidence 333444555666666666666653 1122 245566666666666666 44 444 4666777
Q ss_pred CcEeecccccCCCCcchhhcCCcCCcEEEccCCCCC
Q 036865 319 LHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 319 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 354 (431)
|++|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 161 L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 161 LKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 7777777777764 33 5667777777777777765
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=5.5e-20 Score=188.50 Aligned_cols=109 Identities=24% Similarity=0.309 Sum_probs=91.6
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEee
Q 036865 244 DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLH 323 (431)
Q Consensus 244 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 323 (431)
.|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|. .+..+++|+.|+|++|++++ +| .++.+++|+.|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--~lp~-~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR--ALPP-ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC--CCCG-GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc--ccch-hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence 46677777787774 565 888999999999999985 6776 68889999999999999985 67 788999999999
Q ss_pred cccccCCCCc-chhhcCCcCCcEEEccCCCCCCCCcc
Q 036865 324 LDENHLNGSI-PNSFKNLKHVSELRLNNNGLTGPLPF 359 (431)
Q Consensus 324 L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~ip~ 359 (431)
|++|++++.. |..++.+++|+.|+|++|++++..|.
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999776 88899999999999999999876553
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.1e-16 Score=141.66 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=105.9
Q ss_pred ccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCC
Q 036865 129 ITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRIN 208 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 208 (431)
..++++|++|++++|.+ ..+| .+..+ ++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+.+++
T Consensus 40 ~~~l~~L~~L~l~~n~i---~~l~-~l~~l-~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINV---TDLT-GIEYA-HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHHHHTCCEEEEESSCC---SCCT-TGGGC-TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred hhhcCCccEEeccCCCc---cChH-HHhcC-CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 36789999999999876 5667 67788 89999999999654 334789999999999999999987888899999
Q ss_pred CCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCC-CCCCCCChh
Q 036865 209 GLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNS-MGPITIPNY 287 (431)
Q Consensus 209 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~i~~~ 287 (431)
+|++|++++|.+++. .+..+..+++|++|++++|. ++ .++
T Consensus 113 ~L~~L~Ls~n~i~~~-----------------------------------~~~~l~~l~~L~~L~L~~n~~i~--~~~-- 153 (197)
T 4ezg_A 113 SLTLLDISHSAHDDS-----------------------------------ILTKINTLPKVNSIDLSYNGAIT--DIM-- 153 (197)
T ss_dssp TCCEEECCSSBCBGG-----------------------------------GHHHHTTCSSCCEEECCSCTBCC--CCG--
T ss_pred CCCEEEecCCccCcH-----------------------------------hHHHHhhCCCCCEEEccCCCCcc--ccH--
Confidence 999999998887632 23344445555555555554 32 222
Q ss_pred hhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCC
Q 036865 288 SFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLN 330 (431)
Q Consensus 288 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 330 (431)
.+..+++|++|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 154 ~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 154 PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 24445555555555555553 22 3445556666666666554
No 114
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=2.1e-18 Score=178.13 Aligned_cols=246 Identities=12% Similarity=0.111 Sum_probs=139.6
Q ss_pred ccccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCC--------------------------CCCCch
Q 036865 125 ISRSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGN--------------------------VGPIPS 178 (431)
Q Consensus 125 l~~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~--------------------------~~~~p~ 178 (431)
++..+.++++|++|++++|.. ..+|..+..+ ++|++|+++.... ...+|.
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~---~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~ 287 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEI---LELVGFFKAA-ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBG---GGGHHHHHHC-TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG
T ss_pred HHHHHhhCCCCcEEeccCccH---HHHHHHHhhh-hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH
Confidence 344445666777777766544 3355555555 5666666653211 122333
Q ss_pred hhcCCCCCCEEEeecccCCccCc-ccccCCCCCcEEEecCCcCCC-CCCCC--CCCCcCEEEcCC-----------CCC-
Q 036865 179 ELGNLTRLKVLDLHKNNLNGSIP-VSLGRINGLRSLDLSGNKLTG-SIPSI--SFPVLNVLDLNQ-----------NLL- 242 (431)
Q Consensus 179 ~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~-~~~~~--~l~~L~~L~l~~-----------n~l- 242 (431)
.+..+++|++|++++|.+++... ..+.++++|++|+++ +.+.. .++.. .+++|++|++++ +.+
T Consensus 288 ~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 33344445555555444332211 223444455555554 21111 11111 346677777762 333
Q ss_pred -----------CCCcEEEccCCCCCCCCcccccC-CCCcceeecC----CCCCCCCC----CChhhhcCCCCCcEEEeeC
Q 036865 243 -----------MDLILLDLSYNHLSGPFPISIRN-LNSLQALILK----SNSMGPIT----IPNYSFIGMRNLMILILSN 302 (431)
Q Consensus 243 -----------~~L~~L~ls~n~l~~~~p~~l~~-l~~L~~L~L~----~n~l~~~~----i~~~~~~~l~~L~~L~L~~ 302 (431)
.+|++|+++.|.+++..+..+.. +++|++|+++ .|.++... ++ ..+.++++|++|++++
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~-~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR-SLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH-HHHHHCTTCCEEEEEC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH-HHHHhCCCCCEEEEec
Confidence 26777777777776555555544 7778888875 45553211 11 1245578888888875
Q ss_pred Cc--CCCCCchhcC-CCCCCcEeecccccCCC-CcchhhcCCcCCcEEEccCCCCCCCC-ccchHHHhhccceEEcccCC
Q 036865 303 MN--LRGPIPESLG-QLPNLHVLHLDENHLNG-SIPNSFKNLKHVSELRLNNNGLTGPL-PFEREMVWKMKSKLRLHNNS 377 (431)
Q Consensus 303 n~--l~~~~p~~~~-~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~g~i-p~~~~~l~~l~~~l~l~~Np 377 (431)
|. +++..+..+. .+++|++|++++|.+++ .++..+..+++|++|++++|.+++.. +.....++.++ .|++++|.
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~ls~n~ 524 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR-YLWVQGYR 524 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC-EEEEESCB
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC-eeECcCCc
Confidence 43 5544444443 47889999999999886 34556688899999999999987543 33334455665 89999987
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=6.9e-18 Score=178.08 Aligned_cols=164 Identities=23% Similarity=0.239 Sum_probs=102.7
Q ss_pred EEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCC
Q 036865 164 TLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLM 243 (431)
Q Consensus 164 ~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 243 (431)
.+++..|.+. ..|..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|.. + ..+.
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~----------~~l~ 270 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAE-I----------KNLS 270 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGG-G----------GGGT
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChh-h----------hCCC
Confidence 3344444433 44566777777777777777777 66766777777777777777776 55532 0 1233
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCC-CCcEe
Q 036865 244 DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLP-NLHVL 322 (431)
Q Consensus 244 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L 322 (431)
+|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|. .|..+++|+.|+|++|.+++.+|..+..+. .+..+
T Consensus 271 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~--~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l 346 (727)
T 4b8c_D 271 NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT--TLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF 346 (727)
T ss_dssp TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC--CCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC--ccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHH
Confidence 5555666666666 67888899999999999999985 6776 488899999999999999988887775432 22347
Q ss_pred ecccccCCCCcchhhcCCcCCcEEEccCC
Q 036865 323 HLDENHLNGSIPNSFKNLKHVSELRLNNN 351 (431)
Q Consensus 323 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 351 (431)
+|++|.+++.+|.. |+.|+++.|
T Consensus 347 ~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 347 YLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp HHHHCCCCCCCCCC---------------
T ss_pred hhccCcccCcCccc------cceeEeecc
Confidence 89999999888764 455666666
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.1e-17 Score=150.53 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=112.6
Q ss_pred CCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCC
Q 036865 131 KLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGL 210 (431)
Q Consensus 131 ~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 210 (431)
++..++.+++.++.. ..++ .+..+ ++|++|++++|.+. .+| .+..+++|++|++++|++++ ++. +.++++|
T Consensus 17 ~l~~l~~l~l~~~~i---~~~~-~~~~l-~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGKQSV---TDLV-SQKEL-SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHHTCSCT---TSEE-CHHHH-TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSC
T ss_pred HHHHHHHHHhcCCCc---cccc-chhhc-CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCC
Confidence 355566666766544 3444 45566 78888888888765 345 67788888888888888874 444 7888888
Q ss_pred cEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhc
Q 036865 211 RSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFI 290 (431)
Q Consensus 211 ~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~ 290 (431)
++|++++|.+++ ++.... .+|++|++++|.+++ + +.+..+++|+.|++++|+++ .++ .+.
T Consensus 88 ~~L~L~~N~l~~-l~~~~~-------------~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~--~~~--~l~ 147 (263)
T 1xeu_A 88 EELSVNRNRLKN-LNGIPS-------------ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLK--SIV--MLG 147 (263)
T ss_dssp CEEECCSSCCSC-CTTCCC-------------SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCC--BCG--GGG
T ss_pred CEEECCCCccCC-cCcccc-------------CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCC--CCh--HHc
Confidence 888888888773 332211 344555555555553 2 24667777777777777774 232 456
Q ss_pred CCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCC
Q 036865 291 GMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGS 332 (431)
Q Consensus 291 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 332 (431)
.+++|+.|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 148 ~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 677777777777777744 4566677777777777776644
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4.8e-17 Score=150.69 Aligned_cols=169 Identities=23% Similarity=0.323 Sum_probs=133.7
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
.+++.++++++.+.+ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+-..++
T Consensus 19 ~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~--------- 85 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSPLKDLT--------- 85 (263)
T ss_dssp HHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCS---------
T ss_pred HHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChhhccCC---------
Confidence 567778888887664 44 5778999999999999998 566 7889999999999999998544422344
Q ss_pred CCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCC
Q 036865 240 NLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNL 319 (431)
Q Consensus 240 n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 319 (431)
+|++|++++|++++ +|. +.. ++|++|++++|.++ .++ .+..+++|+.|++++|++++. + .+..+++|
T Consensus 86 ----~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~--~~~--~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L 152 (263)
T 1xeu_A 86 ----KLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELR--DTD--SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL 152 (263)
T ss_dssp ----SCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCS--BSG--GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC
T ss_pred ----CCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccC--CCh--hhcCcccccEEECCCCcCCCC-h-HHccCCCC
Confidence 45555666666663 333 223 89999999999986 343 478899999999999999854 4 67889999
Q ss_pred cEeecccccCCCCcchhhcCCcCCcEEEccCCCCCCC
Q 036865 320 HVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGP 356 (431)
Q Consensus 320 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 356 (431)
+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 153 ~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 153 EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 9999999999965 6788999999999999999855
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=5.7e-16 Score=136.39 Aligned_cols=154 Identities=21% Similarity=0.222 Sum_probs=96.5
Q ss_pred EEEccCCCCCCCCcc-cccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecc
Q 036865 247 LLDLSYNHLSGPFPI-SIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLD 325 (431)
Q Consensus 247 ~L~ls~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 325 (431)
+|++++|.+++..+. .+..+++|++|++++|.++ .+....|.++++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 33 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 110 (192)
T 1w8a_A 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT--GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110 (192)
T ss_dssp EEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred EEECCCCcCCccCCccccccCCCCCEEECCCCCCC--CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 333444444433332 3667777777777777774 3433467777888888888888887777778888888888888
Q ss_pred cccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCccccccCCCCCCCCCC
Q 036865 326 ENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSIDSGIGLCESG 405 (431)
Q Consensus 326 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~~~~~~~C~~~ 405 (431)
+|++++..|..+..+++|++|++++|++.+..+... +........+.++...|.... .+....-..++.....|..+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~--~~~~l~~~~~~~~~~~C~~P~-~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW--FAEWLRKKSLNGGAARCGAPS-KVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp SSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH--HHHHHHHHCCSGGGCBBCSST-TTTTSBGGGSCTTTCCCCCC
T ss_pred CCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH--HHHHHHHcCCCCCCCCCCCCh-HHcCCChhhCcHhhcCcCCC
Confidence 888888778888888888899999988887765321 111111223445555665432 22221111234455667644
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=6.3e-17 Score=167.08 Aligned_cols=226 Identities=12% Similarity=0.031 Sum_probs=161.5
Q ss_pred ccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCc-hhhcCCCCCCEEEeecccCCccCccccc
Q 036865 127 RSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIP-SELGNLTRLKVLDLHKNNLNGSIPVSLG 205 (431)
Q Consensus 127 ~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 205 (431)
..+..+++|+.|+++++.. ..+|..+..+ ++|++|++++|.+.+... ..+.++++|++|+++++...+.++....
T Consensus 264 ~~l~~~~~L~~L~l~~~~~---~~l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGP---NEMPILFPFA-AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339 (592)
T ss_dssp SCCCCCTTCCEEEETTCCT---TTGGGGGGGG-GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred HHhhccccccccCccccch---hHHHHHHhhc-CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHH
Confidence 3445555566665554322 5667777777 899999999998654333 3468999999999994432233444456
Q ss_pred CCCCCcEEEecC-----------CcCCCC-CCC--CCCCCcCEEEcCCCCCC------------CCcEEEcc----CCCC
Q 036865 206 RINGLRSLDLSG-----------NKLTGS-IPS--ISFPVLNVLDLNQNLLM------------DLILLDLS----YNHL 255 (431)
Q Consensus 206 ~l~~L~~L~L~~-----------n~l~~~-~~~--~~l~~L~~L~l~~n~l~------------~L~~L~ls----~n~l 255 (431)
.+++|++|++++ +.+++. +.. ..+++|+.|+++.+.++ +|+.|+++ .|.+
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 789999999994 444421 111 14789999999777654 79999996 6677
Q ss_pred CCC-----CcccccCCCCcceeecCCCC--CCCCCCChhhhcCCCCCcEEEeeCCcCCC-CCchhcCCCCCCcEeecccc
Q 036865 256 SGP-----FPISIRNLNSLQALILKSNS--MGPITIPNYSFIGMRNLMILILSNMNLRG-PIPESLGQLPNLHVLHLDEN 327 (431)
Q Consensus 256 ~~~-----~p~~l~~l~~L~~L~L~~n~--l~~~~i~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N 327 (431)
++. ++..+.++++|++|+++.|. ++ ..........+++|++|++++|++++ .++..+..+++|++|++++|
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT-DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC-HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCcc-HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 753 33446779999999997643 42 22222233458999999999999986 34566688999999999999
Q ss_pred cCCCC-cchhhcCCcCCcEEEccCCCCCCCC
Q 036865 328 HLNGS-IPNSFKNLKHVSELRLNNNGLTGPL 357 (431)
Q Consensus 328 ~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~i 357 (431)
.+++. ++.....+++|++|++++|++++.-
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 98754 4455678999999999999988653
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=4.7e-15 Score=128.62 Aligned_cols=113 Identities=25% Similarity=0.313 Sum_probs=62.2
Q ss_pred CCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEee
Q 036865 244 DLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLH 323 (431)
Q Consensus 244 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 323 (431)
+|++|++++|++++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ--SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce--EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 3344444555555444444555666666666666654 34443455566666666666666644444455566666666
Q ss_pred cccccCCCCcchhhcCCcCCcEEEccCCCCCCCCc
Q 036865 324 LDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLP 358 (431)
Q Consensus 324 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 358 (431)
+++|++++..+..+..+++|++|++++|++.+..|
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 66666664433344556666666666666655443
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=3.3e-19 Score=182.72 Aligned_cols=186 Identities=22% Similarity=0.179 Sum_probs=138.7
Q ss_pred cCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCc-------------CCCCCCCC--CCCCcCEEE-cCCCCCCC
Q 036865 181 GNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNK-------------LTGSIPSI--SFPVLNVLD-LNQNLLMD 244 (431)
Q Consensus 181 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~~~~--~l~~L~~L~-l~~n~l~~ 244 (431)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|. ..+..|.. .+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34566666666666665 566666666666666665443 22222221 344555555 45555555
Q ss_pred CcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeec
Q 036865 245 LILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHL 324 (431)
Q Consensus 245 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 324 (431)
|+.+.+++|.+.. ++. ..|+.|++++|.++ .+|. +..+++|+.|+|++|+++ .+|..++.+++|+.|+|
T Consensus 425 L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~--~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 425 LRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLT--VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCS--SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEEC
T ss_pred hhhhhhhcccccc-cCc-----cCceEEEecCCCCC--CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEEC
Confidence 6666666666552 221 25899999999996 4664 888999999999999999 88999999999999999
Q ss_pred ccccCCCCcchhhcCCcCCcEEEccCCCCCCCC-ccchHHHhhccceEEcccCCCccc
Q 036865 325 DENHLNGSIPNSFKNLKHVSELRLNNNGLTGPL-PFEREMVWKMKSKLRLHNNSGLCY 381 (431)
Q Consensus 325 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i-p~~~~~l~~l~~~l~l~~Np~~c~ 381 (431)
++|.+++ +| .++.+++|+.|+|++|++++.. |..+..+..+. .|++++|+....
T Consensus 494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~-~L~L~~N~l~~~ 548 (567)
T 1dce_A 494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV-LLNLQGNSLCQE 548 (567)
T ss_dssp CSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC-EEECTTSGGGGS
T ss_pred CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC-EEEecCCcCCCC
Confidence 9999996 67 8999999999999999999876 99999988887 999999986543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=3.7e-15 Score=128.07 Aligned_cols=132 Identities=23% Similarity=0.205 Sum_probs=60.8
Q ss_pred CCCCEEEeecccCC-ccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCccc
Q 036865 184 TRLKVLDLHKNNLN-GSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPIS 262 (431)
Q Consensus 184 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~ 262 (431)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. +.. ..+.+|++|++++|.+.+.+|..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~------------~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL------------PKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC------------CCCSSCCEEEEESCCCCSCCCHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh------------ccCCCCCEEECcCCcCchHHHHH
Confidence 55666666666665 45555556666666666666655522 100 01122333333333333334444
Q ss_pred ccCCCCcceeecCCCCCCCCCCCh-hhhcCCCCCcEEEeeCCcCCCCCc---hhcCCCCCCcEeecccccCC
Q 036865 263 IRNLNSLQALILKSNSMGPITIPN-YSFIGMRNLMILILSNMNLRGPIP---ESLGQLPNLHVLHLDENHLN 330 (431)
Q Consensus 263 l~~l~~L~~L~L~~n~l~~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~ 330 (431)
+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 91 ~~~l~~L~~L~Ls~N~l~--~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLK--DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHCTTCCEEECBSSSCC--SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HhhCCCCCEEeccCCccC--cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 445556666666666553 2211 234444444444444444442222 23444444444444444433
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.7e-15 Score=128.07 Aligned_cols=135 Identities=24% Similarity=0.311 Sum_probs=81.9
Q ss_pred ccccEEEeecCCCC-CCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC--CCCCcCEEE
Q 036865 160 QTLQTLVLRENGNV-GPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI--SFPVLNVLD 236 (431)
Q Consensus 160 ~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~l~~L~~L~ 236 (431)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|.. .++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP------ 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC------
Confidence 34555555555544 34554455555555555555555532 44555555555555555555433322 122
Q ss_pred cCCCCCCCCcEEEccCCCCCCC-CcccccCCCCcceeecCCCCCCCCCCCh---hhhcCCCCCcEEEeeCCcCCCCCchh
Q 036865 237 LNQNLLMDLILLDLSYNHLSGP-FPISIRNLNSLQALILKSNSMGPITIPN---YSFIGMRNLMILILSNMNLRGPIPES 312 (431)
Q Consensus 237 l~~n~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~i~~---~~~~~l~~L~~L~L~~n~l~~~~p~~ 312 (431)
+|++|++++|.+++. .+..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+. .+|..
T Consensus 96 -------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 96 -------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT--NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp -------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG--TSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred -------CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc--chHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 333334444444432 1267888999999999999985 4444 46888999999999999988 55543
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2.2e-14 Score=126.37 Aligned_cols=110 Identities=29% Similarity=0.384 Sum_probs=92.7
Q ss_pred CcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeec
Q 036865 245 LILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHL 324 (431)
Q Consensus 245 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 324 (431)
|++|++++|.++ .+|..+.++++|++|++++|.++ .++...|.++++|++|+|++|++++..|..+..+++|++|+|
T Consensus 33 l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS--TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp CCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC--EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 444555555565 56778889999999999999986 566667889999999999999999888888999999999999
Q ss_pred ccccCCCCcchhhcCCcCCcEEEccCCCCCCCC
Q 036865 325 DENHLNGSIPNSFKNLKHVSELRLNNNGLTGPL 357 (431)
Q Consensus 325 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i 357 (431)
++|.++...+..+..+++|+.|++++|++.+.-
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 999999666667899999999999999998643
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=2.2e-15 Score=129.90 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=77.7
Q ss_pred cceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEc
Q 036865 269 LQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRL 348 (431)
Q Consensus 269 L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 348 (431)
.+.+++++|.++ .+|.. + .++|++|+|++|++++..|..+..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 11 ~~~l~~s~n~l~--~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLA--SVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCS--SCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC--ccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 456666666664 34432 1 366777777777777666666777777777777777777555556677777777777
Q ss_pred cCCCCCCCCccchHHHhhccceEEcccCCCcccCC-CCCCCCcccc
Q 036865 349 NNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNA-GSDFEDGLDS 393 (431)
Q Consensus 349 ~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~-~~~~~~~~~~ 393 (431)
++|++++..+..+..+..++ .+++++|++.|+|. ..++..|+..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~-~L~L~~N~~~c~c~~l~~l~~~l~~ 130 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLT-HIWLLNNPWDCACSDILYLSRWISQ 130 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCC-EEECCSSCBCTTBGGGHHHHHHHHH
T ss_pred CCCccCEeCHHHhcCCCCCC-EEEeCCCCCCCCchhHHHHHHHHHh
Confidence 77777754444455666665 77777777777774 5555555543
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=4.6e-15 Score=141.94 Aligned_cols=227 Identities=12% Similarity=0.051 Sum_probs=136.1
Q ss_pred CCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCC-------------------CCc-hhhcC--------C
Q 036865 132 LPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVG-------------------PIP-SELGN--------L 183 (431)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~-------------------~~p-~~~~~--------l 183 (431)
+.+++.|.++++.. ..-...+....++|++|+|++|.+.. .+| ..|.+ +
T Consensus 24 ~~~l~~L~l~g~i~---~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGKLN---AEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEEEC---HHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEecccc---HHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccccc
Confidence 55667777665321 11112233311567777777776550 122 34566 8
Q ss_pred CCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC---CCCCcCEEEcCCCC-------------------
Q 036865 184 TRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI---SFPVLNVLDLNQNL------------------- 241 (431)
Q Consensus 184 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---~l~~L~~L~l~~n~------------------- 241 (431)
++|+.|+|.+ .++..-+..|.++++|+.+++.+|.+. .++.. .+.++..+....+.
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 8888888887 676444556788888888888888766 33333 22333333332210
Q ss_pred ----------------------CCCCcEEEccCCCCCCCCcccc-cCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEE
Q 036865 242 ----------------------LMDLILLDLSYNHLSGPFPISI-RNLNSLQALILKSNSMGPITIPNYSFIGMRNLMIL 298 (431)
Q Consensus 242 ----------------------l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L 298 (431)
..+++.+.+.++-.. .....+ ..+++|+.+++++|+++ .++..+|.++++|+.+
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT--TIPDFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC--EECTTTTTTCTTCCEE
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc--eecHhhhhCCCCCCEE
Confidence 001112222211000 000001 13678888888888875 7777788888888888
Q ss_pred EeeCCcCCCCCchhcCCCCCCc-EeecccccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhcc
Q 036865 299 ILSNMNLRGPIPESLGQLPNLH-VLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMK 368 (431)
Q Consensus 299 ~L~~n~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~ 368 (431)
++.+| +...-+.+|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|.++..-+..+....+++
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 88887 6655566788888888 888887 66645557888888888888888888844444555555554
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=4.6e-16 Score=164.12 Aligned_cols=257 Identities=17% Similarity=0.133 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHhcC-------CCCCCCCCCCCCCCccceEeCCCCCCeeEEEEEecCCCCCCCCCCCCCCCCcccccc
Q 036865 56 EPKEQEAVYDIMRATG-------NDWATEIPDVCRGRWHGIECMPDKENVYHVVSLMFGALSDDTAFPTCDPTRSHISRS 128 (431)
Q Consensus 56 ~~~e~~~l~~~~~~~~-------~~w~~~~~~~C~~~w~gv~C~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~l~~~ 128 (431)
...+..++.++..++. ..|.......+ .|.++.+.. .+++.+++.... ....+..
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~-----~~~~~l~L~~n~-----------~~~~~~~ 191 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSG--TATNSAVST-----PLTPKIELFANG-----------KDEANQA 191 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccc--cCCCceecC-----CccceEEeeCCC-----------CCcchhh
Confidence 3345677777765542 23432222233 588877753 257777775432 1112333
Q ss_pred ccCCCCCcEEEcCcccCC--CCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccC
Q 036865 129 ITKLPYLRTLFFYRCFTH--NPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGR 206 (431)
Q Consensus 129 l~~l~~L~~L~l~~~~~~--~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 206 (431)
+.....|+.+.+...... .....+..+..+ ++|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|++
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l-~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 268 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDD-QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN 268 (727)
T ss_dssp ------------------------------CC-CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG
T ss_pred HhhcCccCcccccCccccccceecChhhhccC-CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC
Confidence 333333333333221100 002334555566 67888888888766 66766777888888888888887 77877888
Q ss_pred CCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCCh
Q 036865 207 INGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPN 286 (431)
Q Consensus 207 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~ 286 (431)
+++|++|+|++|.++ .+|.. + ..+.+|++|+|++|.++ .+|..|+.+++|+.|+|++|.++ +.++.
T Consensus 269 l~~L~~L~Ls~N~l~-~lp~~-~----------~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~p~ 334 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLT-SLPAE-L----------GSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE-KQFLK 334 (727)
T ss_dssp GTTCCEEECTTSCCS-SCCSS-G----------GGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC-SHHHH
T ss_pred CCCCCEEeCcCCcCC-ccChh-h----------cCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC-CCChH
Confidence 888888888888877 55543 1 12335556666666665 66777888888888888888873 33333
Q ss_pred hhhcCC-CCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccc--------cCCCCcchhhcCCcCCcEEEccCCCCC
Q 036865 287 YSFIGM-RNLMILILSNMNLRGPIPESLGQLPNLHVLHLDEN--------HLNGSIPNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 287 ~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N--------~l~~~~p~~l~~l~~L~~L~L~~N~l~ 354 (431)
.+... ..+..++|++|.+++.+|. .|+.|++++| .+.+..+..+..+..+....+++|-+.
T Consensus 335 -~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 335 -ILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -HHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred -HHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 33221 1122467788888877665 3455556655 333333444555666667777777664
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2.8e-14 Score=123.67 Aligned_cols=153 Identities=24% Similarity=0.291 Sum_probs=116.0
Q ss_pred cEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecc
Q 036865 246 ILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLD 325 (431)
Q Consensus 246 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 325 (431)
+.++++++++. .+|..+ .++|++|++++|+++ .++...+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc--EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 45666777766 445433 368999999999985 5666567889999999999999996666677889999999999
Q ss_pred cccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHHHhhccceEEcccCCCcccCC-CCCCCCccccc--cCCCCCCC
Q 036865 326 ENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNA-GSDFEDGLDSS--IDSGIGLC 402 (431)
Q Consensus 326 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~-~~~~~~~~~~~--~~~~~~~C 402 (431)
+|.+++..+..+..+++|++|++++|++++..+..+..+..++ .+++++|++.|+|. ..++..|+... .......|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C 163 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ-KIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 163 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC-EEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBB
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC-EEEecCCCeeccCccHHHHHHHHhhCccccccCcEe
Confidence 9999977777788999999999999999854444445566676 89999999999986 44555555442 22356677
Q ss_pred CC
Q 036865 403 ES 404 (431)
Q Consensus 403 ~~ 404 (431)
..
T Consensus 164 ~~ 165 (177)
T 2o6r_A 164 SG 165 (177)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=4.5e-15 Score=124.91 Aligned_cols=126 Identities=20% Similarity=0.178 Sum_probs=79.0
Q ss_pred CCcEEEccCCCCC-CCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEe
Q 036865 244 DLILLDLSYNHLS-GPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVL 322 (431)
Q Consensus 244 ~L~~L~ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 322 (431)
+|+.|++++|.++ +.+|..+..+++|++|++++|.++. + ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--I--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--c--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4555555555555 4556566666777777777776642 2 246666777777777777775566666667777777
Q ss_pred ecccccCCCC-cchhhcCCcCCcEEEccCCCCCCCCc---cchHHHhhccceEEcc
Q 036865 323 HLDENHLNGS-IPNSFKNLKHVSELRLNNNGLTGPLP---FEREMVWKMKSKLRLH 374 (431)
Q Consensus 323 ~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~ip---~~~~~l~~l~~~l~l~ 374 (431)
++++|.+++. .+..+..+++|++|++++|++++..+ ..+..++.++ .++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~-~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT-YLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC-EETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc-cccCC
Confidence 7777777642 23566777777777777777765444 2444555554 55554
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.6e-14 Score=121.44 Aligned_cols=127 Identities=26% Similarity=0.254 Sum_probs=62.3
Q ss_pred CCCCEEEeecccCC-ccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCccc
Q 036865 184 TRLKVLDLHKNNLN-GSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPIS 262 (431)
Q Consensus 184 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~ 262 (431)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. +.. ..+.+|++|++++|.+++.+|..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~------------~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL------------PKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC------------CCCTTCCEEECCSSCCCSCTHHH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh------------hcCCCCCEEECCCCcccchHHHH
Confidence 45666666666665 45555556666666666666655422 100 01112233333333333334444
Q ss_pred ccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCC-CchhcCCCCCCcEeecccccCCCCcc---hhhc
Q 036865 263 IRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGP-IPESLGQLPNLHVLHLDENHLNGSIP---NSFK 338 (431)
Q Consensus 263 l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p---~~l~ 338 (431)
+..+++|++|++++|.+ ++. .+..+..+++|++|++++|.+++..+ ..+.
T Consensus 84 ~~~l~~L~~L~ls~N~i--------------------------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 137 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKI--------------------------KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFK 137 (149)
T ss_dssp HHHCTTCCEEECTTSCC--------------------------CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHH
T ss_pred hhhCCCCCEEECCCCcC--------------------------CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHH
Confidence 44455555555555544 421 12445555556666666665554333 3455
Q ss_pred CCcCCcEEEcc
Q 036865 339 NLKHVSELRLN 349 (431)
Q Consensus 339 ~l~~L~~L~L~ 349 (431)
.+++|++|+++
T Consensus 138 ~l~~L~~L~l~ 148 (149)
T 2je0_A 138 LLPQLTYLDGY 148 (149)
T ss_dssp HCTTCCEETTB
T ss_pred HCCCcccccCC
Confidence 56666666554
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=4.4e-16 Score=160.77 Aligned_cols=133 Identities=13% Similarity=0.073 Sum_probs=64.2
Q ss_pred CCcEEEccCCCCCCCCccccc-CCCCcceeecC--C----CCCCCCCCCh---hhhcCCCCCcEEEeeCCcCCCCCchhc
Q 036865 244 DLILLDLSYNHLSGPFPISIR-NLNSLQALILK--S----NSMGPITIPN---YSFIGMRNLMILILSNMNLRGPIPESL 313 (431)
Q Consensus 244 ~L~~L~ls~n~l~~~~p~~l~-~l~~L~~L~L~--~----n~l~~~~i~~---~~~~~l~~L~~L~L~~n~l~~~~p~~~ 313 (431)
+|++|.+..|.+++.....+. .+++|++|+++ + +.++...... ..+..+++|++|++++ .+++..+..+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 555555555555433333332 35666666666 2 3332110000 0134455666666654 4443333333
Q ss_pred CC-CCCCcEeecccccCCCCcchhh-cCCcCCcEEEccCCCCCCCCcc-chHHHhhccceEEcccCCC
Q 036865 314 GQ-LPNLHVLHLDENHLNGSIPNSF-KNLKHVSELRLNNNGLTGPLPF-EREMVWKMKSKLRLHNNSG 378 (431)
Q Consensus 314 ~~-l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~g~ip~-~~~~l~~l~~~l~l~~Np~ 378 (431)
.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++..+. ....+..++ .|++++|+.
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~l~~~~~ 518 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR-SLWMSSCSV 518 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS-EEEEESSCC
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC-EEeeeCCCC
Confidence 33 5666666666666654433333 4566666666666666433222 122234444 666666654
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=7.5e-16 Score=159.01 Aligned_cols=170 Identities=15% Similarity=0.034 Sum_probs=99.2
Q ss_pred CCCCCcEEEecCCcCCCCCCC---CCCCCcCEEEcCCC-----------CCCCCcEEEccC---------CCCCCCCccc
Q 036865 206 RINGLRSLDLSGNKLTGSIPS---ISFPVLNVLDLNQN-----------LLMDLILLDLSY---------NHLSGPFPIS 262 (431)
Q Consensus 206 ~l~~L~~L~L~~n~l~~~~~~---~~l~~L~~L~l~~n-----------~l~~L~~L~ls~---------n~l~~~~p~~ 262 (431)
.+++|++|++++|.+.+.... ..+++|+.|++++| .+.+|++|++.+ +.+++.....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 455666666666664421111 14566666666655 234667776632 2333221122
Q ss_pred c-cCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEee--C----CcCCCC-----CchhcCCCCCCcEeecccccCC
Q 036865 263 I-RNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILS--N----MNLRGP-----IPESLGQLPNLHVLHLDENHLN 330 (431)
Q Consensus 263 l-~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~--~----n~l~~~-----~p~~~~~l~~L~~L~L~~N~l~ 330 (431)
+ ..+++|++|.+..|.++. .........+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTN-AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCH-HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHhchhHHHHHHhcCCcCH-HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 2 236777777776666631 1111122347788888888 3 445421 122245677888888877 666
Q ss_pred CCcchhhcC-CcCCcEEEccCCCCCCCCccch-HHHhhccceEEcccCCC
Q 036865 331 GSIPNSFKN-LKHVSELRLNNNGLTGPLPFER-EMVWKMKSKLRLHNNSG 378 (431)
Q Consensus 331 ~~~p~~l~~-l~~L~~L~L~~N~l~g~ip~~~-~~l~~l~~~l~l~~Np~ 378 (431)
+..+..+.. +++|+.|++++|.+++..+..+ ..++.++ .|++++|+.
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~-~L~L~~n~~ 493 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR-KLEIRDCPF 493 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCC-EEEEESCSC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcC-EEECcCCCC
Confidence 555555554 8889999999999876544444 3455665 899999985
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=5.2e-14 Score=121.94 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=54.4
Q ss_pred cccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCch--hcCCCCCCcEeecccccCCCCcch----
Q 036865 262 SIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPE--SLGQLPNLHVLHLDENHLNGSIPN---- 335 (431)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~---- 335 (431)
.+..+++|++|++++|.++ .++...+..+++|++|++++|++. .+|. .+..+++|+.|++++|.++ .+|.
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~ 134 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRIC--RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLY 134 (176)
T ss_dssp CCCCCSSCCEEECCSSCCC--EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHH
T ss_pred ccccCCCCCEEECCCCccc--ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHH
Confidence 3445556666666666654 334334455666666666666665 4444 5666677777777777776 3444
Q ss_pred hhcCCcCCcEEEccCCCCC
Q 036865 336 SFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 336 ~l~~l~~L~~L~L~~N~l~ 354 (431)
.+..+++|+.|++++|...
T Consensus 135 ~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 135 VIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHHCTTCSEETTEECCHH
T ss_pred HHHHCCccceeCCCcCCHH
Confidence 3667777777777776554
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=4.9e-14 Score=121.92 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=63.3
Q ss_pred ceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEcc
Q 036865 270 QALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLN 349 (431)
Q Consensus 270 ~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 349 (431)
+.+++++|+++ .+|.. + .++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+.++++|++|+|+
T Consensus 15 ~~l~~~~n~l~--~iP~~-~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA--SVPAG-I--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS--SCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC--ccCCC-c--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 44555555553 34432 1 2555666666666665555556666666666666666664444445566666666666
Q ss_pred CCCCCCCCccchHHHhhccceEEcccCCCcccCC-CCCCCCcc
Q 036865 350 NNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNA-GSDFEDGL 391 (431)
Q Consensus 350 ~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~-~~~~~~~~ 391 (431)
+|++++..+..+..+..+. .+++++|++.|+|. ..++..|+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~-~L~L~~N~~~c~~~~~~~l~~~~ 131 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLT-HIYLYNNPWDCECRDIMYLRNWV 131 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCS-EEECCSSCBCTTBGGGHHHHHHH
T ss_pred CCccceeCHHHhccccCCC-EEEeCCCCcccccccHHHHHHHH
Confidence 6666643333344455554 66666666666664 33344443
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=4.3e-16 Score=137.85 Aligned_cols=132 Identities=25% Similarity=0.301 Sum_probs=76.4
Q ss_pred hhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCC
Q 036865 179 ELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGP 258 (431)
Q Consensus 179 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~ 258 (431)
.+.++++|++|++++|.+++ +| .+.++++|++|++++|.++ .
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~----------------------------------- 84 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-K----------------------------------- 84 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-S-----------------------------------
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-c-----------------------------------
Confidence 66677777777777777763 55 6666677777777666655 2
Q ss_pred CcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCc-hhcCCCCCCcEeecccccCCCCcch--
Q 036865 259 FPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIP-ESLGQLPNLHVLHLDENHLNGSIPN-- 335 (431)
Q Consensus 259 ~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~-- 335 (431)
+|..+..+++|++|++++|+++ .++ .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+.+|.
T Consensus 85 l~~~~~~~~~L~~L~L~~N~l~--~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 160 (198)
T 1ds9_A 85 IENLDAVADTLEELWISYNQIA--SLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160 (198)
T ss_dssp CSSHHHHHHHCSEEEEEEEECC--CHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred ccchhhcCCcCCEEECcCCcCC--cCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence 2333344455555555555553 222 24445556666666666552211 2455666666666666666544333
Q ss_pred --------hhcCCcCCcEEEccCCCCC
Q 036865 336 --------SFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 336 --------~l~~l~~L~~L~L~~N~l~ 354 (431)
.+..+++|+.|| +|.++
T Consensus 161 ~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 161 ATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp THHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred chHHHHHHHHHhCCCcEEEC--CcccC
Confidence 266677777775 55554
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=8.9e-13 Score=113.46 Aligned_cols=108 Identities=26% Similarity=0.285 Sum_probs=87.0
Q ss_pred cEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecc
Q 036865 246 ILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLD 325 (431)
Q Consensus 246 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 325 (431)
+.+++++|.++ .+|..+ .++|++|++++|.++ .++...|.++++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT--KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCC--ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 45667777776 456554 378888999999885 4555578888999999999999997667778899999999999
Q ss_pred cccCCCCcchhhcCCcCCcEEEccCCCCCCCCc
Q 036865 326 ENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLP 358 (431)
Q Consensus 326 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip 358 (431)
+|++++..+..+..+++|++|+|++|++.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999997666678999999999999999986543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=2.9e-13 Score=117.20 Aligned_cols=126 Identities=19% Similarity=0.158 Sum_probs=97.5
Q ss_pred CCcEEEccCCCCCCCCcccccCC-CCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEe
Q 036865 244 DLILLDLSYNHLSGPFPISIRNL-NSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVL 322 (431)
Q Consensus 244 ~L~~L~ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 322 (431)
+|+.|++++|.++ .++. +..+ ++|++|++++|.++ .+ ..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~--~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIR--KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCC--EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCC--cc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4445555555555 3343 4444 48999999999986 33 267889999999999999996555556889999999
Q ss_pred ecccccCCCCcch--hhcCCcCCcEEEccCCCCCCCCccc----hHHHhhccceEEcccCCC
Q 036865 323 HLDENHLNGSIPN--SFKNLKHVSELRLNNNGLTGPLPFE----REMVWKMKSKLRLHNNSG 378 (431)
Q Consensus 323 ~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~g~ip~~----~~~l~~l~~~l~l~~Np~ 378 (431)
++++|.++ .+|. .+..+++|+.|++++|+++ .+|.. +..++.+. .+++++|+.
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~-~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR-VLDFQKVKL 152 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS-EETTEECCH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccc-eeCCCcCCH
Confidence 99999997 5665 7899999999999999998 56664 66677776 899998864
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=1.9e-13 Score=131.57 Aligned_cols=128 Identities=20% Similarity=0.231 Sum_probs=69.9
Q ss_pred eecCCC-CCCCCCCChhhhcCCCCCcEEEeeC-CcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEcc
Q 036865 272 LILKSN-SMGPITIPNYSFIGMRNLMILILSN-MNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLN 349 (431)
Q Consensus 272 L~L~~n-~l~~~~i~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 349 (431)
++++++ +++ .+|. +..+++|+.|+|++ |++.+..+..|+.+++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus 13 v~~~~~n~l~--~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGALD--SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCCT--TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCCC--ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 344444 443 3443 44555566666654 56655445556666666666666666665555566666666666666
Q ss_pred CCCCCCCCccchHHHhhccceEEcccCCCcccCCCCCCCCcccccc---CCCCCCCCCC
Q 036865 350 NNGLTGPLPFEREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSSI---DSGIGLCESG 405 (431)
Q Consensus 350 ~N~l~g~ip~~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~~---~~~~~~C~~~ 405 (431)
+|+|++ +|........+. .|++.+|++.|+|...|+..|+.... +.+...|..+
T Consensus 89 ~N~l~~-~~~~~~~~~~L~-~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 89 FNALES-LSWKTVQGLSLQ-ELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp SSCCSC-CCSTTTCSCCCC-EEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred CCccce-eCHHHcccCCce-EEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 666663 333222222233 66677777777776666665554321 2244555443
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=2e-12 Score=111.71 Aligned_cols=112 Identities=24% Similarity=0.278 Sum_probs=85.4
Q ss_pred cEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecc
Q 036865 246 ILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLD 325 (431)
Q Consensus 246 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 325 (431)
+.+++++|++. .+|..+. ++|++|++++|.++ .++...|.++++|++|+|++|++++..+..+..+++|++|+|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT--KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc--ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 45666666665 5565553 78888888888885 4544568888899999999999986555567889999999999
Q ss_pred cccCCCCcchhhcCCcCCcEEEccCCCCCCCCccchHH
Q 036865 326 ENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPFEREM 363 (431)
Q Consensus 326 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~ 363 (431)
+|++++..+..+..+++|++|+|++|++.. .+..+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c-~~~~~~~ 126 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC-ECRDIMY 126 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT-TBGGGHH
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc-ccccHHH
Confidence 999996655568899999999999999985 3443333
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=4.3e-15 Score=131.35 Aligned_cols=137 Identities=23% Similarity=0.313 Sum_probs=102.6
Q ss_pred CCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCC
Q 036865 149 QPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSIS 228 (431)
Q Consensus 149 ~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~ 228 (431)
..+|..+..+ ++|++|++++|.+.+ +| .+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 38 ~~l~~~~~~l-~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~------ 107 (198)
T 1ds9_A 38 EKMDATLSTL-KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS------ 107 (198)
T ss_dssp CCCHHHHHHT-TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC------
T ss_pred hhhhHHHhcC-CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc------
Confidence 4556688888 899999999998876 67 8889999999999999998 788888878889999998887762
Q ss_pred CCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCCh-hhhcCCCCCcEEEeeCCcCCC
Q 036865 229 FPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPN-YSFIGMRNLMILILSNMNLRG 307 (431)
Q Consensus 229 l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~-~~~~~l~~L~~L~L~~n~l~~ 307 (431)
+| .+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+.+
T Consensus 108 ------------------------------l~-~~~~l~~L~~L~l~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 108 ------------------------------LS-GIEKLVNLRVLYMSNNKIT--NWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp ------------------------------HH-HHHHHHHSSEEEESEEECC--CHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred ------------------------------CC-ccccCCCCCEEECCCCcCC--chhHHHHHhcCCCCCEEEecCCcccc
Confidence 22 3556677777777777764 2222 346677778888888887765
Q ss_pred CCch----------hcCCCCCCcEeecccccCC
Q 036865 308 PIPE----------SLGQLPNLHVLHLDENHLN 330 (431)
Q Consensus 308 ~~p~----------~~~~l~~L~~L~L~~N~l~ 330 (431)
..|. .+..+++|+.|+ +|.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 155 DYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 5443 256778888876 66655
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=2.4e-12 Score=122.89 Aligned_cols=212 Identities=17% Similarity=0.140 Sum_probs=157.2
Q ss_pred CCCCcEEEcCcccCCC-----------------CCCCChhhhcc--------cccccEEEeecCCCCCCCchhhcCCCCC
Q 036865 132 LPYLRTLFFYRCFTHN-----------------PQPIPAFLGQL--------GQTLQTLVLRENGNVGPIPSELGNLTRL 186 (431)
Q Consensus 132 l~~L~~L~l~~~~~~~-----------------~~~ip~~i~~l--------~~~L~~L~L~~n~~~~~~p~~~~~l~~L 186 (431)
+++|++|+|++|.+.. ...||+..+.- .++|+.|++.+ .+...-+..|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 7788888888776530 01345444333 37999999988 6665555679999999
Q ss_pred CEEEeecccCCccCcccccCCCCCcEEEecCCcC---CCCCCCC-----------------------------CCCCcCE
Q 036865 187 KVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKL---TGSIPSI-----------------------------SFPVLNV 234 (431)
Q Consensus 187 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~~~~-----------------------------~l~~L~~ 234 (431)
+.+++++|.+....+..|.++.++..+....+.. ...+... ...++..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 9999999988756666777777776665544211 0011111 1233445
Q ss_pred EEcCCCC-----------CCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCc-EEEeeC
Q 036865 235 LDLNQNL-----------LMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLM-ILILSN 302 (431)
Q Consensus 235 L~l~~n~-----------l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~-~L~L~~ 302 (431)
+.+.++- ..+|+.+++++|+++...+..|.++++|+++++.+| ++ .++..+|.++++|+ .+++.+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~--~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK--TIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEEECT
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc--eehHHHhhCChhccEEEEEcc
Confidence 5554432 568999999999998666678999999999999998 54 68888999999999 999998
Q ss_pred CcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEc
Q 036865 303 MNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRL 348 (431)
Q Consensus 303 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 348 (431)
+++..-+.+|.++++|+.+++++|.++...+..|.++++|+.++.
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 777566788999999999999999999666679999999999864
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.32 E-value=2.6e-11 Score=118.84 Aligned_cols=235 Identities=14% Similarity=0.113 Sum_probs=143.3
Q ss_pred cccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCC
Q 036865 128 SITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRI 207 (431)
Q Consensus 128 ~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 207 (431)
+|.++ +|+.+.+..+ . ..|+...+.- .+|+.+.+.. .+...-+..|.++++|+.+++.+|.++ .++......
T Consensus 131 aF~~~-~L~~i~l~~~-i---~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~ 202 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-L---KSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVY 202 (401)
T ss_dssp TTTTC-CCSEEECCTT-C---CEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTT
T ss_pred hcccC-CccEEEeCCC-c---cEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEee
Confidence 45554 6888887654 2 4555554444 4788888875 455444467888888999999888887 444443346
Q ss_pred CCCcEEEecCCcCCCCCCCC---CCCCcCEEEcCCCC---------CCCCcEEEccCCCCCCCCcccccCCCCcceeecC
Q 036865 208 NGLRSLDLSGNKLTGSIPSI---SFPVLNVLDLNQNL---------LMDLILLDLSYNHLSGPFPISIRNLNSLQALILK 275 (431)
Q Consensus 208 ~~L~~L~L~~n~l~~~~~~~---~l~~L~~L~l~~n~---------l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~ 275 (431)
.+|+.+.+..+ +. .++.. .+++|+.+.+..+- -.+|+.+.+. +.++..-...|.++++|+.+.+.
T Consensus 203 ~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 203 AGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred cccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 88888888744 44 34433 45677777776531 0256666663 34443445566777777777777
Q ss_pred CCCCCC---CCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCC
Q 036865 276 SNSMGP---ITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNG 352 (431)
Q Consensus 276 ~n~l~~---~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 352 (431)
++.+.. ..++...|.++++|+.+.+.+ .+...-..+|.++.+|+.+.|..| ++..-..+|.++ +|+.+++.+|.
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 665420 125556677777777777773 455444556777777777777544 553444567777 77777777776
Q ss_pred CCCCCccchHHHhhccceEEcccC
Q 036865 353 LTGPLPFEREMVWKMKSKLRLHNN 376 (431)
Q Consensus 353 l~g~ip~~~~~l~~l~~~l~l~~N 376 (431)
+....+..+..+......+++..+
T Consensus 357 ~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 357 PPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CcccccccccCCCCCccEEEeCHH
Confidence 653222233333222225555544
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=1.6e-11 Score=117.95 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=100.2
Q ss_pred EEEccCC-CCCCCCcccccCCCCcceeecCC-CCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeec
Q 036865 247 LLDLSYN-HLSGPFPISIRNLNSLQALILKS-NSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHL 324 (431)
Q Consensus 247 ~L~ls~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 324 (431)
.++++++ +++ .+|. +..+++|++|+|++ |.++ .++...|.++++|+.|+|++|+|++..|..|..+++|++|+|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC--CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3567776 777 5777 89999999999996 9885 667667899999999999999999888888999999999999
Q ss_pred ccccCCCCcchhhcCCcCCcEEEccCCCCCCCCcc-chHHHhhccceEEcccCCCcccCCC
Q 036865 325 DENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLPF-EREMVWKMKSKLRLHNNSGLCYNAG 384 (431)
Q Consensus 325 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~-~~~~l~~l~~~l~l~~Np~~c~~~~ 384 (431)
++|+|++..+..+..++ |+.|+|.+|++...-.. .+..+... ....+..+...|....
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~-~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEE-GLGGVPEQKLQCHGQG 146 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHT-TCSSCGGGCCCCSSSS
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHh-CcccccccCCCCCCCh
Confidence 99999966556666665 99999999999864321 12222221 1334455667776643
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=1e-09 Score=107.46 Aligned_cols=228 Identities=15% Similarity=0.125 Sum_probs=157.2
Q ss_pred CCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCc
Q 036865 132 LPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLR 211 (431)
Q Consensus 132 l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 211 (431)
+..++.+.+.+. ...|+...+.- .+|+.+.+..+ +...-..+|.+ .+|+.+.+.. .++..-+..|.++++|+
T Consensus 112 ~~~l~~i~ip~~----i~~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPNS----VKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp CSSCSEEECCTT----CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred cCCccEEEECCc----cCEehHhhccc-CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCC
Confidence 466777777543 14555555544 57999999876 55444456777 4799999986 56645567899999999
Q ss_pred EEEecCCcCCCCCCCC--CCCCcCEEEcCCC----------CCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCC
Q 036865 212 SLDLSGNKLTGSIPSI--SFPVLNVLDLNQN----------LLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSM 279 (431)
Q Consensus 212 ~L~L~~n~l~~~~~~~--~l~~L~~L~l~~n----------~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 279 (431)
.+++..|.++ .++.. ...+|+.+.+..+ ...+|+.+++..+ ++..-...|.+ .+|+.+.+. +.+
T Consensus 184 ~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 184 KADLSKTKIT-KLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EEECTTSCCS-EECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eeecCCCcce-EechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 9999999887 45544 4577888887643 2237788888764 44333445555 678888884 334
Q ss_pred CCCCCChhhhcCCCCCcEEEeeCCcCC-----CCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCC
Q 036865 280 GPITIPNYSFIGMRNLMILILSNMNLR-----GPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 280 ~~~~i~~~~~~~l~~L~~L~L~~n~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 354 (431)
+ .++..+|.++++|+.+++.+|.+. ...+..|.++++|+.+++.+ .++......|.++.+|+.+.+..| ++
T Consensus 260 ~--~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 260 T--NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp C--EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred c--EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 3 566678888889999998887765 24456788888899999884 466444567888889999988655 55
Q ss_pred CCCccchHHHhhccceEEcccCC
Q 036865 355 GPLPFEREMVWKMKSKLRLHNNS 377 (431)
Q Consensus 355 g~ip~~~~~l~~l~~~l~l~~Np 377 (431)
..-+..+... .+. .+++.+|.
T Consensus 336 ~I~~~aF~~~-~L~-~l~l~~n~ 356 (401)
T 4fdw_A 336 QINFSAFNNT-GIK-EVKVEGTT 356 (401)
T ss_dssp EECTTSSSSS-CCC-EEEECCSS
T ss_pred EEcHHhCCCC-CCC-EEEEcCCC
Confidence 2223344444 555 78887774
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=1.3e-12 Score=126.87 Aligned_cols=166 Identities=19% Similarity=0.121 Sum_probs=78.1
Q ss_pred ccccEEEeecCCCCCCCchhhc-----CCCCCCEEEeecccCCccCcccc-cCCCCCcEEEecCCcCCCCCCCCCCCCcC
Q 036865 160 QTLQTLVLRENGNVGPIPSELG-----NLTRLKVLDLHKNNLNGSIPVSL-GRINGLRSLDLSGNKLTGSIPSISFPVLN 233 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~-----~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 233 (431)
++|++|++++|.+.......+. ..++|++|+|++|.++......+ ..+++|++|+|++|.++......-...|+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 5688888888876543333332 22678888888887763322222 23456777777777664211000000000
Q ss_pred EEEcCCCCCCCCcEEEccCCCCCC----CCcccccCCCCcceeecCCCCCCCCCCC--hhhhcCCCCCcEEEeeCCcCCC
Q 036865 234 VLDLNQNLLMDLILLDLSYNHLSG----PFPISIRNLNSLQALILKSNSMGPITIP--NYSFIGMRNLMILILSNMNLRG 307 (431)
Q Consensus 234 ~L~l~~n~l~~L~~L~ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~i~--~~~~~~l~~L~~L~L~~n~l~~ 307 (431)
.....|++|++++|.++. .++..+...++|++|+|++|.++..... ...+...++|++|+|++|.+++
T Consensus 152 ------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 ------HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp ------STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred ------hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 001234444555554442 1223334455566666666555311000 1123334455555555555543
Q ss_pred C----CchhcCCCCCCcEeecccccCCC
Q 036865 308 P----IPESLGQLPNLHVLHLDENHLNG 331 (431)
Q Consensus 308 ~----~p~~~~~l~~L~~L~L~~N~l~~ 331 (431)
. ++..+...++|++|+|++|.+++
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 2 22223334455555555555553
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.01 E-value=5.7e-11 Score=115.21 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=107.2
Q ss_pred CCCCcEEEecCCcCCCCCCCC-------CCCCcCEEEcCCCCCC------------CCcEEEccCCCCCCCCcccc----
Q 036865 207 INGLRSLDLSGNKLTGSIPSI-------SFPVLNVLDLNQNLLM------------DLILLDLSYNHLSGPFPISI---- 263 (431)
Q Consensus 207 l~~L~~L~L~~n~l~~~~~~~-------~l~~L~~L~l~~n~l~------------~L~~L~ls~n~l~~~~p~~l---- 263 (431)
++.|++|++++|.++...... ..++|++|++++|.++ +|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999987321111 2368999999999876 78899999998875433333
Q ss_pred -cCCCCcceeecCCCCCCCCCCC--hhhhcCCCCCcEEEeeCCcCCCC----CchhcCCCCCCcEeecccccCCCC----
Q 036865 264 -RNLNSLQALILKSNSMGPITIP--NYSFIGMRNLMILILSNMNLRGP----IPESLGQLPNLHVLHLDENHLNGS---- 332 (431)
Q Consensus 264 -~~l~~L~~L~L~~n~l~~~~i~--~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~---- 332 (431)
...++|++|++++|.++..... ...+...++|++|+|++|.+++. ++..+...++|+.|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2457899999999987421111 12346678899999999988743 345566778899999999988753
Q ss_pred cchhhcCCcCCcEEEccCCCCCCC
Q 036865 333 IPNSFKNLKHVSELRLNNNGLTGP 356 (431)
Q Consensus 333 ~p~~l~~l~~L~~L~L~~N~l~g~ 356 (431)
+...+...++|++|+|++|.++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 344556678899999999988744
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=2.7e-09 Score=102.80 Aligned_cols=84 Identities=17% Similarity=0.278 Sum_probs=61.0
Q ss_pred CCCCCcEEEeeCCcCCCCCchhc---CCCCCCcEeecccccCCCC----cchhhcCCcCCcEEEccCCCCCCCCccchHH
Q 036865 291 GMRNLMILILSNMNLRGPIPESL---GQLPNLHVLHLDENHLNGS----IPNSFKNLKHVSELRLNNNGLTGPLPFEREM 363 (431)
Q Consensus 291 ~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~ip~~~~~ 363 (431)
.+++|++|+|.+|.+.+..+..+ ..+++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.++. .....
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d---~~~~~ 326 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD---EMKKE 326 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH---HHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH---HHHHH
Confidence 47899999999998875433332 3578999999999999864 34444667999999999998873 33444
Q ss_pred Hhh-ccceEEcccCC
Q 036865 364 VWK-MKSKLRLHNNS 377 (431)
Q Consensus 364 l~~-l~~~l~l~~Np 377 (431)
+.. +...+++++|.
T Consensus 327 l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHCCSEEECCSBC
T ss_pred HHHHcCCEEEecCCc
Confidence 443 33478888876
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=3.4e-09 Score=102.03 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=97.9
Q ss_pred cccccCCCCCcEEEcCcccCCC-------CCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCc
Q 036865 126 SRSITKLPYLRTLFFYRCFTHN-------PQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNG 198 (431)
Q Consensus 126 ~~~l~~l~~L~~L~l~~~~~~~-------~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~ 198 (431)
..++.++++|+.|.+....... .+.+...+..+ ++|+.|+++++.-. .++. +. +++|++|+|..+.+..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~-P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM-PLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPD 207 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC-TTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcC-CCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCCh
Confidence 3445567888888775431100 11244444555 67777777665211 2222 32 6677777776666553
Q ss_pred cCccccc--CCCCCcEEEecCC--cCCCCCCCCCCCCcCEEEcCCCCCCCCcEEEccCCCCCCCCcccc--cCCCCccee
Q 036865 199 SIPVSLG--RINGLRSLDLSGN--KLTGSIPSISFPVLNVLDLNQNLLMDLILLDLSYNHLSGPFPISI--RNLNSLQAL 272 (431)
Q Consensus 199 ~~p~~l~--~l~~L~~L~L~~n--~l~~~~~~~~l~~L~~L~l~~n~l~~L~~L~ls~n~l~~~~p~~l--~~l~~L~~L 272 (431)
.....+. .+++|++|+|+.+ ...+.. . +. .+...+ ..+++|+.|
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~---~--------------------------~~-~l~~~l~~~~~p~Lr~L 257 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDG---D--------------------------MN-VFRPLFSKDRFPNLKWL 257 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCS---C--------------------------GG-GTGGGSCTTTCTTCCEE
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccch---h--------------------------HH-HHHHHHhcCCCCCcCEE
Confidence 3222332 5666777766431 111100 0 00 000111 235667777
Q ss_pred ecCCCCCCCCCCChhhh--cCCCCCcEEEeeCCcCCCC----CchhcCCCCCCcEeecccccCCCCcchhhcC-CcCCcE
Q 036865 273 ILKSNSMGPITIPNYSF--IGMRNLMILILSNMNLRGP----IPESLGQLPNLHVLHLDENHLNGSIPNSFKN-LKHVSE 345 (431)
Q Consensus 273 ~L~~n~l~~~~i~~~~~--~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~ 345 (431)
++.+|.+.. ......+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++......+.. + ...
T Consensus 258 ~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~ 334 (362)
T 2ra8_A 258 GIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMK 334 (362)
T ss_dssp EEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSE
T ss_pred eCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCE
Confidence 776666521 1111111 2356778888887777653 2333345678888888888877443333332 2 356
Q ss_pred EEccCCC
Q 036865 346 LRLNNNG 352 (431)
Q Consensus 346 L~L~~N~ 352 (431)
+++++++
T Consensus 335 ~~~~~~~ 341 (362)
T 2ra8_A 335 IDVSDSQ 341 (362)
T ss_dssp EECCSBC
T ss_pred EEecCCc
Confidence 7777776
No 149
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.62 E-value=1.7e-08 Score=82.29 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=69.6
Q ss_pred EeecccccCC-CCcchhhcCCcCCcEEEccCCCCCCCCcc-chHHHhhccceEEcccCCCcccCCCCCCCCccccc---c
Q 036865 321 VLHLDENHLN-GSIPNSFKNLKHVSELRLNNNGLTGPLPF-EREMVWKMKSKLRLHNNSGLCYNAGSDFEDGLDSS---I 395 (431)
Q Consensus 321 ~L~L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~g~ip~-~~~~l~~l~~~l~l~~Np~~c~~~~~~~~~~~~~~---~ 395 (431)
.++.+++.++ ..+|..+ .++|+.|+|++|+|+. +|. .+..+..+. .++|.+|||.|+|...||..|+... .
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~-~L~L~~NP~~CdC~l~~l~~wl~~~~~~~ 87 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTA-LPPGLLDALPALR-TAHLGANPWRCDCRLVPLRAWLAGRPERA 87 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSS-CCTTTGGGCTTCC-EEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCc-cChhhhhhccccC-EEEecCCCeeccCccHHHHHHHHhCcccc
Confidence 5666666665 2344332 2357778888888773 444 344555555 8999999999999999999998663 2
Q ss_pred CCCCCCCCCCCCCCCCccccccccccc
Q 036865 396 DSGIGLCESGKPGSANSVQHLGTLEEN 422 (431)
Q Consensus 396 ~~~~~~C~~~~~~~~~~l~~l~~~~~~ 422 (431)
......|..|.....+.+.+++..+..
T Consensus 88 ~~~~~~C~~P~~l~g~~l~~l~~~~l~ 114 (130)
T 3rfe_A 88 PYRDLRCVAPPALRGRLLPYLAEDELR 114 (130)
T ss_dssp GGTTCBCCBSTTTTTCBGGGCCHHHHH
T ss_pred cccCcEeCcChHHcCCCcccCCHHHhh
Confidence 235678999999999999888866654
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.53 E-value=1.6e-06 Score=84.46 Aligned_cols=109 Identities=9% Similarity=0.173 Sum_probs=74.3
Q ss_pred ccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCC
Q 036865 261 ISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNL 340 (431)
Q Consensus 261 ~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 340 (431)
..|.++.+|+.+.+..+.. .+....|.+++.|+.+.+. +.++..-...|.++.+|+.+++..+ ++..-..+|.++
T Consensus 259 ~aF~~c~~L~~i~lp~~~~---~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV---SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC---EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ceeeecccccEEecccccc---eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 3456678888888876543 4556678888888888886 4455344566778888888888765 553445578888
Q ss_pred cCCcEEEccCCCCCCCCcc-chHHHhhccceEEcccCC
Q 036865 341 KHVSELRLNNNGLTGPLPF-EREMVWKMKSKLRLHNNS 377 (431)
Q Consensus 341 ~~L~~L~L~~N~l~g~ip~-~~~~l~~l~~~l~l~~Np 377 (431)
.+|+.+.+..+ ++ .+.. .+.....|+ .+++.+|.
T Consensus 334 ~~L~~i~ip~s-v~-~I~~~aF~~C~~L~-~i~~~~~~ 368 (394)
T 4gt6_A 334 EQLERIAIPSS-VT-KIPESAFSNCTALN-NIEYSGSR 368 (394)
T ss_dssp TTCCEEEECTT-CC-BCCGGGGTTCTTCC-EEEESSCH
T ss_pred CCCCEEEECcc-cC-EEhHhHhhCCCCCC-EEEECCce
Confidence 88888888654 55 4443 444455665 77887764
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.37 E-value=2.4e-06 Score=83.23 Aligned_cols=182 Identities=15% Similarity=0.113 Sum_probs=80.3
Q ss_pred ccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCCCCCCcCEEEcCC
Q 036865 160 QTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSISFPVLNVLDLNQ 239 (431)
Q Consensus 160 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 239 (431)
++|+.+.+.++ ....-...|.++.+|+.+++..+ ++..-...+.++..|+.+.+..+...-.-......+|+.+.+..
T Consensus 162 ~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~ 239 (394)
T 4fs7_A 162 ESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPD 239 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECT
T ss_pred CCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECC
Confidence 56666666543 22222234556666666666544 33222334555555555554433221000001223344443322
Q ss_pred C----------CCCCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCC
Q 036865 240 N----------LLMDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPI 309 (431)
Q Consensus 240 n----------~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 309 (431)
. ....|+.+.+..+... .....+..+..++.+....+. ++...|..+.+|+.+.+..+ +...-
T Consensus 240 ~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~-----i~~~~F~~~~~L~~i~l~~~-i~~I~ 312 (394)
T 4fs7_A 240 SFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI-----VPEKTFYGCSSLTEVKLLDS-VKFIG 312 (394)
T ss_dssp TCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE-----ECTTTTTTCTTCCEEEECTT-CCEEC
T ss_pred CceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee-----eccccccccccccccccccc-cceec
Confidence 1 1124444444433222 222334444555555444332 22334455555555555443 33233
Q ss_pred chhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCC
Q 036865 310 PESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNN 351 (431)
Q Consensus 310 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 351 (431)
..+|.++.+|+.+++.++ ++..-..+|.++.+|+.+++..+
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 344555555666655433 33222345555555666555544
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=7.1e-06 Score=79.85 Aligned_cols=185 Identities=11% Similarity=0.103 Sum_probs=104.4
Q ss_pred hhhcCCCCCCEEEeecccCCccCcccccCCCCCcEEEecCCcCCCCCCCC---CCCCcCEEEcCCCC---------CCCC
Q 036865 178 SELGNLTRLKVLDLHKNNLNGSIPVSLGRINGLRSLDLSGNKLTGSIPSI---SFPVLNVLDLNQNL---------LMDL 245 (431)
Q Consensus 178 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~---~l~~L~~L~l~~n~---------l~~L 245 (431)
..|.++.+|+.+.+..+... .-...|.++.+|+.+.+..+ ++ .+... .+..|+.+.+..+. -..|
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l 232 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLGDFALSKTGV 232 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCC
T ss_pred hhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEeehhhcccCCC
Confidence 45777778888877654322 33446677777777777654 22 22222 34445555443321 1256
Q ss_pred cEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecc
Q 036865 246 ILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLD 325 (431)
Q Consensus 246 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 325 (431)
+.+.+... +.......+..+..|+.+.+..+.. .+....|..+..++.+....+.+. ...+..+.+|+.+.+.
T Consensus 233 ~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~---~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 233 KNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL---RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC---EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEEC
T ss_pred ceEEECCC-ceecccccccccccceeEEcCCCcc---eeeccccccccccceeccCceeec---cccccccccccccccc
Confidence 66665432 2212234556677777777766643 344456677777777776655432 2345667778877776
Q ss_pred cccCCCCcchhhcCCcCCcEEEccCCCCCCCCc-cchHHHhhccceEEcccC
Q 036865 326 ENHLNGSIPNSFKNLKHVSELRLNNNGLTGPLP-FEREMVWKMKSKLRLHNN 376 (431)
Q Consensus 326 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip-~~~~~l~~l~~~l~l~~N 376 (431)
++ ++.....+|.++.+|+.+++.++ ++ .+. ..+.....+. .+.+..|
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~-~i~lp~~ 353 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLS-NINFPLS 353 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCC-EECCCTT
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCC-EEEECcc
Confidence 54 44333456777778888877643 44 333 2333444554 5666544
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=9.3e-08 Score=83.01 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=60.0
Q ss_pred ccccCCCCcceeecCCCCCCCCCC--ChhhhcCCCCCcEEEeeCCcCCCC----CchhcCCCCCCcEeec--ccccCCCC
Q 036865 261 ISIRNLNSLQALILKSNSMGPITI--PNYSFIGMRNLMILILSNMNLRGP----IPESLGQLPNLHVLHL--DENHLNGS 332 (431)
Q Consensus 261 ~~l~~l~~L~~L~L~~n~l~~~~i--~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~~ 332 (431)
..+...++|++|+|++|.+..... -...+...+.|++|+|++|.+.+. +...+...++|++|+| ++|.+...
T Consensus 59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 344555667777777776631110 011334456777777777777643 3455666678888888 77888743
Q ss_pred ----cchhhcCCcCCcEEEccCCCCC
Q 036865 333 ----IPNSFKNLKHVSELRLNNNGLT 354 (431)
Q Consensus 333 ----~p~~l~~l~~L~~L~L~~N~l~ 354 (431)
+...+...++|++|+|++|.+.
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3345566788888888888775
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.17 E-value=4.4e-07 Score=78.72 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=84.4
Q ss_pred ccccCCCCcceeecCCC-CCCCCCCC--hhhhcCCCCCcEEEeeCCcCCCC----CchhcCCCCCCcEeecccccCCCC-
Q 036865 261 ISIRNLNSLQALILKSN-SMGPITIP--NYSFIGMRNLMILILSNMNLRGP----IPESLGQLPNLHVLHLDENHLNGS- 332 (431)
Q Consensus 261 ~~l~~l~~L~~L~L~~n-~l~~~~i~--~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~- 332 (431)
..+...+.|++|+|++| .+...... ...+...+.|++|+|++|++... +...+...++|++|+|++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34567889999999999 87421111 12456678999999999999753 344455668999999999999853
Q ss_pred ---cchhhcCCcCCcEEEc--cCCCCCCCCccchH----HHhhccceEEcccCCC
Q 036865 333 ---IPNSFKNLKHVSELRL--NNNGLTGPLPFERE----MVWKMKSKLRLHNNSG 378 (431)
Q Consensus 333 ---~p~~l~~l~~L~~L~L--~~N~l~g~ip~~~~----~l~~l~~~l~l~~Np~ 378 (431)
+...+...++|++|+| ++|.+.......+. ....+. .|++++|..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~-~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL-KFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCC-EEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcC-EEeccCCCC
Confidence 4566788899999999 88999854322232 223444 899998863
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.14 E-value=5.1e-05 Score=73.70 Aligned_cols=90 Identities=7% Similarity=0.006 Sum_probs=52.3
Q ss_pred ccccCCCCCcEEEcCcccCCCCCCCChhhhcccccccEEEeecCCCCCCCchhhcCCCCCCEEEeecccCCccCcccccC
Q 036865 127 RSITKLPYLRTLFFYRCFTHNPQPIPAFLGQLGQTLQTLVLRENGNVGPIPSELGNLTRLKVLDLHKNNLNGSIPVSLGR 206 (431)
Q Consensus 127 ~~l~~l~~L~~L~l~~~~~~~~~~ip~~i~~l~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 206 (431)
.+|.++++|+.+.+..+.-.....|....+....+|+.+.+..+ +...-...|.++.+|+.+.+..+. ...-...+.+
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~ 158 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSY 158 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceec
Confidence 35677888888887654322223444433332256776666543 333333457778888888886543 3233446667
Q ss_pred CCCCcEEEecCC
Q 036865 207 INGLRSLDLSGN 218 (431)
Q Consensus 207 l~~L~~L~L~~n 218 (431)
+.+|+.+.+..+
T Consensus 159 c~~L~~i~~~~~ 170 (394)
T 4gt6_A 159 CYSLHTVTLPDS 170 (394)
T ss_dssp CTTCCEEECCTT
T ss_pred ccccccccccce
Confidence 777777777543
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=2.8e-06 Score=77.76 Aligned_cols=81 Identities=25% Similarity=0.267 Sum_probs=38.3
Q ss_pred CCCCcceeecCCCCCCCC-CCChhhhcCCCCCcEEEeeCCcCCCC-CchhcCCCCCCcEeecccccCCCCcc-------h
Q 036865 265 NLNSLQALILKSNSMGPI-TIPNYSFIGMRNLMILILSNMNLRGP-IPESLGQLPNLHVLHLDENHLNGSIP-------N 335 (431)
Q Consensus 265 ~l~~L~~L~L~~n~l~~~-~i~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p-------~ 335 (431)
++++|+.|+|++|+++.. .++ ..+..+++|+.|+|++|++.+. ....+..+ +|++|+|++|.+.+.+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~-~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGT-THHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccch-hHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 455666666666666421 111 1334455666666666655532 01112222 55555555555554333 1
Q ss_pred hhcCCcCCcEEE
Q 036865 336 SFKNLKHVSELR 347 (431)
Q Consensus 336 ~l~~l~~L~~L~ 347 (431)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244455555544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.01 E-value=3.7e-06 Score=76.96 Aligned_cols=77 Identities=31% Similarity=0.410 Sum_probs=60.6
Q ss_pred cccccccEEEeecCCCCC--CCchhhcCCCCCCEEEeecccCCccCcccccCCC--CCcEEEecCCcCCCCCCCC-----
Q 036865 157 QLGQTLQTLVLRENGNVG--PIPSELGNLTRLKVLDLHKNNLNGSIPVSLGRIN--GLRSLDLSGNKLTGSIPSI----- 227 (431)
Q Consensus 157 ~l~~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~~~~----- 227 (431)
.+ ++|++|+|++|.+.+ .+|..+..+++|++|+|++|.+++. ..+..+. +|++|+|++|.+.+.+|..
T Consensus 168 ~l-~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NI-PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HC-TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hC-CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45 789999999999887 4556777899999999999999854 3344444 8999999999998766631
Q ss_pred ----CCCCcCEEE
Q 036865 228 ----SFPVLNVLD 236 (431)
Q Consensus 228 ----~l~~L~~L~ 236 (431)
.+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 578887776
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.96 E-value=0.00029 Score=67.80 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=46.1
Q ss_pred cccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeecccccCCCCcchhhcCCc
Q 036865 262 SIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLK 341 (431)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 341 (431)
.+.++..|+.+.+..+ ++ .+....|.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++..-...|.++.
T Consensus 235 ~f~~~~~L~~i~lp~~-v~--~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VT--SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTCSSCCEEEECTT-CC--EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccCCccceEEEcCCC-cc--EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 3445555666655443 21 344445555666666666433 3323334455666666666666666533344566666
Q ss_pred CCcEEEccC
Q 036865 342 HVSELRLNN 350 (431)
Q Consensus 342 ~L~~L~L~~ 350 (431)
+|+.+.|..
T Consensus 311 ~L~~i~lp~ 319 (379)
T 4h09_A 311 KLSSVTLPT 319 (379)
T ss_dssp TCCEEECCT
T ss_pred CCCEEEcCc
Confidence 666666643
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.84 E-value=7.3e-06 Score=69.80 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=53.1
Q ss_pred CcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCc-CCCCCchhcCCC----CCCcEeeccccc-CCCCcchhhcCCc
Q 036865 268 SLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMN-LRGPIPESLGQL----PNLHVLHLDENH-LNGSIPNSFKNLK 341 (431)
Q Consensus 268 ~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~l~~l~ 341 (431)
.|++|+++++.++...+. .+.++++|++|+|++|. +++.--..+..+ ++|++|+|++|. +++.--..+.+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~--~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFD--HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGG--GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHH--HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 567777777766432222 34567777777777774 554333334443 368888888874 6654445667788
Q ss_pred CCcEEEccCCC
Q 036865 342 HVSELRLNNNG 352 (431)
Q Consensus 342 ~L~~L~L~~N~ 352 (431)
+|+.|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888888874
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.66 E-value=2e-05 Score=67.10 Aligned_cols=82 Identities=10% Similarity=0.071 Sum_probs=52.4
Q ss_pred CcEEEccCCCCCCCCcccccCCCCcceeecCCCC-CCCCCCChhhhcCC----CCCcEEEeeCCc-CCCCCchhcCCCCC
Q 036865 245 LILLDLSYNHLSGPFPISIRNLNSLQALILKSNS-MGPITIPNYSFIGM----RNLMILILSNMN-LRGPIPESLGQLPN 318 (431)
Q Consensus 245 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~i~~~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~ 318 (431)
|++||++++.++..--..+..+++|++|+|++|. +++..+ ..+..+ ++|++|+|++|. +++.--..+..+++
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL--~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL--ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH--HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH--HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4445555555443333456678888888888885 431111 123433 368899998874 77554455677889
Q ss_pred CcEeeccccc
Q 036865 319 LHVLHLDENH 328 (431)
Q Consensus 319 L~~L~L~~N~ 328 (431)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999885
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.64 E-value=0.0015 Score=62.78 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=78.7
Q ss_pred CCCcEEEccCCCCCCCCcccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEe
Q 036865 243 MDLILLDLSYNHLSGPFPISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVL 322 (431)
Q Consensus 243 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 322 (431)
..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +. .++...|.++.+|+.+.+.++.++..-...|.++.+|+.+
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 36777777654 44334456778889999998765 32 5666789999999999999998885566788999999999
Q ss_pred ecccccCCCCcchhhcCCcCCcEEEccCC
Q 036865 323 HLDENHLNGSIPNSFKNLKHVSELRLNNN 351 (431)
Q Consensus 323 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N 351 (431)
.|..+ ++..-..+|.++.+|+.+.+..+
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 99765 55344568899999998877543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.04 E-value=0.00023 Score=61.61 Aligned_cols=93 Identities=9% Similarity=0.031 Sum_probs=55.5
Q ss_pred ccccCCCCcceeecCCCCCCCCC--CChhhhcCCCCCcEEEeeCCcCCCC----CchhcCCCCCCcEeeccccc---CCC
Q 036865 261 ISIRNLNSLQALILKSNSMGPIT--IPNYSFIGMRNLMILILSNMNLRGP----IPESLGQLPNLHVLHLDENH---LNG 331 (431)
Q Consensus 261 ~~l~~l~~L~~L~L~~n~l~~~~--i~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~---l~~ 331 (431)
+.+..-+.|+.|+|++|.+.... .-...+...+.|++|+|++|.|.+. +.+.+..-+.|++|+|++|. +..
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~ 143 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 143 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence 34455566777777777663111 0112344457777777777777643 33445556678888887653 332
Q ss_pred ----CcchhhcCCcCCcEEEccCCCC
Q 036865 332 ----SIPNSFKNLKHVSELRLNNNGL 353 (431)
Q Consensus 332 ----~~p~~l~~l~~L~~L~L~~N~l 353 (431)
.+...+...+.|+.|+++.|.+
T Consensus 144 ~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 144 QVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2344566777888888876654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.67 E-value=0.00053 Score=59.34 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=65.3
Q ss_pred ccCCCCcceeecCCC-CCCCCC--CChhhhcCCCCCcEEEeeCCcCCCC----CchhcCCCCCCcEeecccccCCCC---
Q 036865 263 IRNLNSLQALILKSN-SMGPIT--IPNYSFIGMRNLMILILSNMNLRGP----IPESLGQLPNLHVLHLDENHLNGS--- 332 (431)
Q Consensus 263 l~~l~~L~~L~L~~n-~l~~~~--i~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--- 332 (431)
+.+-+.|++|+|++| .+.... .-...+...+.|+.|+|++|++.+. +.+.+..-+.|++|+|++|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345678999999885 663111 0113456678999999999999853 344455668999999999999853
Q ss_pred -cchhhcCCcCCcEEEccCCC
Q 036865 333 -IPNSFKNLKHVSELRLNNNG 352 (431)
Q Consensus 333 -~p~~l~~l~~L~~L~L~~N~ 352 (431)
+.+.+...+.|++|+|++|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHhhCCceeEEECCCCc
Confidence 34567778889999998763
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.55 E-value=0.0043 Score=49.92 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=35.6
Q ss_pred EEEeeCCcCC-CCCchhcCCCCCCcEeecccccCCCCcchhhcCCcCCcEEEccCCCCCC
Q 036865 297 ILILSNMNLR-GPIPESLGQLPNLHVLHLDENHLNGSIPNSFKNLKHVSELRLNNNGLTG 355 (431)
Q Consensus 297 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 355 (431)
.++.++++++ ..+|..+ .++|++|+|++|+|+...+..|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4555566554 2344332 2357777777777775445566777777777777777753
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.90 E-value=41 Score=24.84 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=20.3
Q ss_pred CChhhhcCCCCCcEEEeeCCcCCCCCchhcCCCCCCcEeeccc
Q 036865 284 IPNYSFIGMRNLMILILSNMNLRGPIPESLGQLPNLHVLHLDE 326 (431)
Q Consensus 284 i~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 326 (431)
+...+|.++.+|+.+.+-.+ ++..-..+|.++.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344555555555555443 2223334455555566555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.54 E-value=49 Score=24.42 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=23.8
Q ss_pred cccccCCCCcceeecCCCCCCCCCCChhhhcCCCCCcEEEeeC
Q 036865 260 PISIRNLNSLQALILKSNSMGPITIPNYSFIGMRNLMILILSN 302 (431)
Q Consensus 260 p~~l~~l~~L~~L~L~~n~l~~~~i~~~~~~~l~~L~~L~L~~ 302 (431)
...|.++++|+.+.|-.+- ..+...+|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~v---~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPNI---GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTTS---SCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCch---heEcHHHHhccCCccEEEEcC
Confidence 3456666666666665542 144555666666666666654
Done!