Query 036866
Match_columns 254
No_of_seqs 176 out of 1447
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 7.4E-26 1.6E-30 173.7 8.3 100 22-121 1-106 (106)
2 PF01657 Stress-antifung: Salt 99.9 4.4E-25 9.5E-30 169.4 8.6 93 140-233 14-106 (106)
3 PF13956 Ibs_toxin: Toxin Ibs, 38.8 18 0.00038 18.6 0.9 11 4-14 5-15 (19)
4 PF10717 ODV-E18: Occlusion-de 22.4 60 0.0013 23.6 1.6 10 1-10 28-37 (85)
5 PF15240 Pro-rich: Proline-ric 18.6 81 0.0018 26.4 1.9 16 1-16 1-16 (179)
6 PHA00008 J DNA packaging prote 14.8 1E+02 0.0022 17.1 1.0 11 101-111 11-21 (26)
7 KOG0862 Synaptobrevin/VAMP-lik 13.8 3.9E+02 0.0085 23.0 4.9 86 143-230 31-118 (216)
8 PF06844 DUF1244: Protein of u 11.2 1.3E+02 0.0029 20.9 1.0 12 194-205 11-22 (68)
9 PF04726 Microvir_J: Microviru 11.0 93 0.002 16.9 0.2 11 101-111 10-20 (24)
10 PRK10905 cell division protein 10.1 1.7E+02 0.0037 26.8 1.6 13 1-13 1-13 (328)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.93 E-value=7.4e-26 Score=173.66 Aligned_cols=100 Identities=40% Similarity=0.869 Sum_probs=76.7
Q ss_pred CCCCC-C-CCcc-CCCchHHHHHHHHHHHHHHhhhhc---CcceeecCCCCCeEEEEEEcCCCCCccchHHHHHHHHHHH
Q 036866 22 GEFCN-K-DSNV-SGNGMISANIDNLLAELVAETAKT---GYIATSYGKDQDKVFGLAQCRGDVDSKDCASCIQDAAKQI 95 (254)
Q Consensus 22 ~~~C~-~-~~~~-~~~s~f~~nl~~ll~~L~~~a~~~---~f~~~~~g~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~i 95 (254)
|+.|+ + ++++ +.+++|+++|+.||..|..+++.+ +|++++.|.++++||||+||++|+++++|+.||+.++..+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 67898 3 3334 566679999999999999998753 8999988888899999999999999999999999999999
Q ss_pred HhhCccCcceEEEcceeEEEecccee
Q 036866 96 RQRCVNQADARIWYDYCFLRYNTENF 121 (254)
Q Consensus 96 ~~~C~~~~ga~i~~~~C~lRYs~~~F 121 (254)
++.|++++||+||+++|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999988
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.92 E-value=4.4e-25 Score=169.37 Aligned_cols=93 Identities=42% Similarity=0.771 Sum_probs=74.9
Q ss_pred CChhhHHHHHHHHHHHHHHHccCCCCCCccccccccCCCceEEEEEeccCCCChhhHHHHHHHHHhhccccCCCCcceEE
Q 036866 140 TDPKSFNKELGALMDEIRSQAVVPKNEGLGKGETTLSPFVTLYALVQCTRDLSQIDCAQCLAIAVGNFPNFCNNKKGCRV 219 (254)
Q Consensus 140 t~~~~f~~~l~~ll~~l~~~a~~~~~~~~~~~~~~~~~~~~vYglaQC~~DLs~~dC~~CL~~a~~~i~~~c~~~~ggri 219 (254)
+++..|++++..||..|+.+++.....+|++++. ..+.++||||+||++||+++||+.||+.++.+|..+|+.++||+|
T Consensus 14 ~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~-~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v 92 (106)
T PF01657_consen 14 TDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSA-GSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRV 92 (106)
T ss_dssp -TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE---ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEE
T ss_pred CCCchHHHHHHHHHHHHHHHHhhccccCcEEeec-CCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEE
Confidence 4566799999999999999987543467888865 346689999999999999999999999999999999999999999
Q ss_pred EcCCeeEEeecCCc
Q 036866 220 LYSSCYVRYELYPF 233 (254)
Q Consensus 220 ~~~~C~lRye~~~F 233 (254)
++++|+||||+|+|
T Consensus 93 ~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 93 WYDSCFLRYENYPF 106 (106)
T ss_dssp EESSEEEEEESS--
T ss_pred ECCCEEEEEECCCC
Confidence 99999999999998
No 3
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=38.81 E-value=18 Score=18.60 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 036866 4 LQSLVLLLFLY 14 (254)
Q Consensus 4 ~~~~~~~~~~~ 14 (254)
++.|+++++++
T Consensus 5 vIIlvvLLliS 15 (19)
T PF13956_consen 5 VIILVVLLLIS 15 (19)
T ss_pred hHHHHHHHhcc
Confidence 34444444443
No 4
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=22.41 E-value=60 Score=23.62 Aligned_cols=10 Identities=40% Similarity=0.727 Sum_probs=6.2
Q ss_pred ChhHHHHHHH
Q 036866 1 MALLQSLVLL 10 (254)
Q Consensus 1 ~~~~~~~~~~ 10 (254)
|.||++||.+
T Consensus 28 MtILivLVII 37 (85)
T PF10717_consen 28 MTILIVLVII 37 (85)
T ss_pred HHHHHHHHHH
Confidence 5677776653
No 5
>PF15240 Pro-rich: Proline-rich
Probab=18.65 E-value=81 Score=26.36 Aligned_cols=16 Identities=38% Similarity=0.247 Sum_probs=8.0
Q ss_pred ChhHHHHHHHHHHHhh
Q 036866 1 MALLQSLVLLLFLYIC 16 (254)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (254)
||+|.+-|.||.|+.+
T Consensus 1 MLlVLLSvALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLSVALLALSSA 16 (179)
T ss_pred ChhHHHHHHHHHhhhc
Confidence 6555444445555554
No 6
>PHA00008 J DNA packaging protein
Probab=14.82 E-value=1e+02 Score=17.12 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=8.4
Q ss_pred cCcceEEEcce
Q 036866 101 NQADARIWYDY 111 (254)
Q Consensus 101 ~~~ga~i~~~~ 111 (254)
.++||+.||.+
T Consensus 11 r~KGARLWYVG 21 (26)
T PHA00008 11 RRKGARLWYVG 21 (26)
T ss_pred ccCceEEEEec
Confidence 46799999864
No 7
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=13.84 E-value=3.9e+02 Score=23.05 Aligned_cols=86 Identities=9% Similarity=0.111 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHHccCCCCCCcccc--ccccCCCceEEEEEeccCCCChhhHHHHHHHHHhhccccCCCCcceEEE
Q 036866 143 KSFNKELGALMDEIRSQAVVPKNEGLGKG--ETTLSPFVTLYALVQCTRDLSQIDCAQCLAIAVGNFPNFCNNKKGCRVL 220 (254)
Q Consensus 143 ~~f~~~l~~ll~~l~~~a~~~~~~~~~~~--~~~~~~~~~vYglaQC~~DLs~~dC~~CL~~a~~~i~~~c~~~~ggri~ 220 (254)
.++.+.++.|+.+|+...+... -..+| ..++.-...|.-|+-|...-+..==-.-|+++..+....-....-.-+.
T Consensus 31 ~e~r~q~K~L~kkLs~~s~~r~--Sietg~f~fHfli~~~Vcylvicd~~yP~kLAF~YLedL~~EF~~~~~~~~~~~~~ 108 (216)
T KOG0862|consen 31 LEYRQQAKSLFKKLSQQSPTRC--SIETGPFVFHFLIESGVCYLVICDKSYPRKLAFSYLEDLAQEFDKSYGKNIIQPAS 108 (216)
T ss_pred HHHHHHHHHHHHhccCCCCccc--ccccCCeEEEEEecCCEEEEEEecCCCcHHHHHHHHHHHHHHHHHhcccccCCccC
Confidence 4677888889988875432111 11111 1223234679999999999888777788899999887766666666688
Q ss_pred cCCeeEEeec
Q 036866 221 YSSCYVRYEL 230 (254)
Q Consensus 221 ~~~C~lRye~ 230 (254)
.|-+|++|+.
T Consensus 109 RPY~FieFD~ 118 (216)
T KOG0862|consen 109 RPYAFIEFDT 118 (216)
T ss_pred CCeeEEehhH
Confidence 8999999984
No 8
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=11.23 E-value=1.3e+02 Score=20.90 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHh
Q 036866 194 IDCAQCLAIAVG 205 (254)
Q Consensus 194 ~dC~~CL~~a~~ 205 (254)
+=||.||+.=..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 569999987443
No 9
>PF04726 Microvir_J: Microvirus J protein; InterPro: IPR006815 This small protein is involved in DNA packaging, interacting with DNA via its hydrophobic C terminus. In bacteriophage phi-X174, J is present in 60 copies, and forms an S-shaped polypeptide chain without any secondary structure. It is thought to interact with DNA through simple charge interactions [].; GO: 0003677 DNA binding, 0019073 viral DNA genome packaging, 0019028 viral capsid; PDB: 1M06_J 1GFF_3 1RB8_J 2BPA_3.
Probab=11.00 E-value=93 Score=16.86 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=4.6
Q ss_pred cCcceEEEcce
Q 036866 101 NQADARIWYDY 111 (254)
Q Consensus 101 ~~~ga~i~~~~ 111 (254)
.++|++.||.+
T Consensus 10 ~~kgarlwyvg 20 (24)
T PF04726_consen 10 KRKGARLWYVG 20 (24)
T ss_dssp SSSSS----SS
T ss_pred ccCceEEEEec
Confidence 46799999864
No 10
>PRK10905 cell division protein DamX; Validated
Probab=10.14 E-value=1.7e+02 Score=26.81 Aligned_cols=13 Identities=46% Similarity=0.575 Sum_probs=8.6
Q ss_pred ChhHHHHHHHHHH
Q 036866 1 MALLQSLVLLLFL 13 (254)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (254)
|+-+-+|||||||
T Consensus 1 MiGiGilVLlLLI 13 (328)
T PRK10905 1 MMGVGILVLLLLI 13 (328)
T ss_pred CcchhHHHHHHHH
Confidence 6667777776653
Done!