Query 036866
Match_columns 254
No_of_seqs 176 out of 1447
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 10:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036866.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036866hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 99.9 1.1E-27 3.6E-32 183.5 9.4 101 20-121 5-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 99.9 1.3E-27 4.4E-32 183.0 9.5 103 18-121 3-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.9 2.5E-26 8.5E-31 175.9 11.3 103 130-233 6-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.9 5.3E-26 1.8E-30 174.1 11.3 105 128-233 4-108 (108)
5 1gff_3 Bacteriophage G4 capsid 13.6 73 0.0025 16.7 1.0 11 101-111 11-21 (26)
6 3nt8_A Ancylostoma secreted pr 8.8 2.9E+02 0.01 24.3 4.1 28 23-53 25-52 (424)
7 3u4z_A Telomerase-associated p 8.2 1.2E+02 0.0043 20.9 1.0 9 246-254 42-50 (109)
8 2o35_A Hypothetical protein DU 6.6 1.5E+02 0.005 21.4 0.8 12 194-205 42-53 (105)
9 3fyb_A Protein of unknown func 6.4 1.5E+02 0.0052 21.3 0.8 12 194-205 41-52 (104)
10 1q90_N Cytochrome B6F complex 6.3 4E+02 0.014 14.8 2.3 15 1-15 3-21 (31)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.95 E-value=1.1e-27 Score=183.53 Aligned_cols=101 Identities=25% Similarity=0.558 Sum_probs=90.4
Q ss_pred CCCCCCCCCCccCCCchHHHHHHHHHHHHHHhhhhc--CcceeecC-CCCCeEEEEEEcCCCCCccchHHHHHHHHHHHH
Q 036866 20 PLGEFCNKDSNVSGNGMISANIDNLLAELVAETAKT--GYIATSYG-KDQDKVFGLAQCRGDVDSKDCASCIQDAAKQIR 96 (254)
Q Consensus 20 p~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~--~f~~~~~g-~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~i~ 96 (254)
.+++.|++. +++++++|++||+.||..|+++++.+ +|++...+ .++++||||+|||||+++++|+.||+.|+.+++
T Consensus 5 ~v~~~Cn~~-~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~ 83 (108)
T 3a2e_A 5 FVSSACNTQ-KIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIF 83 (108)
T ss_dssp EEEEEECSS-BCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHH
T ss_pred eeeeecCCC-ccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 467789765 56778899999999999999998765 56666655 456899999999999999999999999999999
Q ss_pred hhCccCcceEEEcceeEEEecccee
Q 036866 97 QRCVNQADARIWYDYCFLRYNTENF 121 (254)
Q Consensus 97 ~~C~~~~ga~i~~~~C~lRYs~~~F 121 (254)
++||+++||+||+++|+||||+++|
T Consensus 84 ~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 84 SICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999987
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.94 E-value=1.3e-27 Score=183.05 Aligned_cols=103 Identities=24% Similarity=0.547 Sum_probs=93.3
Q ss_pred cCCCCCCCCCCCccCCCchHHHHHHHHHHHHHHhhhhc--CcceeecCCCC-CeEEEEEEcCCCCCccchHHHHHHHHHH
Q 036866 18 ADPLGEFCNKDSNVSGNGMISANIDNLLAELVAETAKT--GYIATSYGKDQ-DKVFGLAQCRGDVDSKDCASCIQDAAKQ 94 (254)
Q Consensus 18 ~~p~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~--~f~~~~~g~~~-~~vygl~qC~~Dls~~~C~~Cl~~a~~~ 94 (254)
..++++.|++ .++++++.|++||+.||..|+++++.+ +|+++++|..+ ++||||+||+||+++++|+.||+.++.+
T Consensus 3 t~~~~~~C~~-~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~ 81 (108)
T 2e79_A 3 TAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNR 81 (108)
T ss_dssp CCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ceeeeeeCCC-CeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHH
Confidence 3467889998 567788899999999999999998754 68888877555 7999999999999999999999999999
Q ss_pred HHhhCccCcceEEEcceeEEEecccee
Q 036866 95 IRQRCVNQADARIWYDYCFLRYNTENF 121 (254)
Q Consensus 95 i~~~C~~~~ga~i~~~~C~lRYs~~~F 121 (254)
+++.||+++||+||+++|++|||+++|
T Consensus 82 ~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 82 IFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 999999999999999999999999987
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.94 E-value=2.5e-26 Score=175.88 Aligned_cols=103 Identities=25% Similarity=0.490 Sum_probs=90.1
Q ss_pred eEEEeeccCCCChhhHHHHHHHHHHHHHHHccCCCCCCccccccccCCCceEEEEEeccCCCChhhHHHHHHHHHhhccc
Q 036866 130 GIFYYNVENVTDPKSFNKELGALMDEIRSQAVVPKNEGLGKGETTLSPFVTLYALVQCTRDLSQIDCAQCLAIAVGNFPN 209 (254)
Q Consensus 130 ~~~~~n~~~~t~~~~f~~~l~~ll~~l~~~a~~~~~~~~~~~~~~~~~~~~vYglaQC~~DLs~~dC~~CL~~a~~~i~~ 209 (254)
....+|.++++.++.|+++|+.||..|..+++.. ..+|+++.....+.++||||+||++||++++|+.||+.++.+|++
T Consensus 6 v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s-~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~~ 84 (108)
T 3a2e_A 6 VSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFS-GYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIFS 84 (108)
T ss_dssp EEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGT-TSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHHH
T ss_pred eeeecCCCccCCCChHHHHHHHHHHHHHhhCccc-cCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 3456788899999999999999999999888643 345655554444568999999999999999999999999999999
Q ss_pred cCCCCcceEEEcCCeeEEeecCCc
Q 036866 210 FCNNKKGCRVLYSSCYVRYELYPF 233 (254)
Q Consensus 210 ~c~~~~ggri~~~~C~lRye~~~F 233 (254)
+|++++||+|++++|+||||+|+|
T Consensus 85 ~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 85 ICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HTTSBSSEEEEETTEEEEEESSCC
T ss_pred HCCCCceEEEECCCEEEEEeCCcC
Confidence 999999999999999999999998
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.93 E-value=5.3e-26 Score=174.06 Aligned_cols=105 Identities=26% Similarity=0.506 Sum_probs=91.1
Q ss_pred eeeEEEeeccCCCChhhHHHHHHHHHHHHHHHccCCCCCCccccccccCCCceEEEEEeccCCCChhhHHHHHHHHHhhc
Q 036866 128 SFGIFYYNVENVTDPKSFNKELGALMDEIRSQAVVPKNEGLGKGETTLSPFVTLYALVQCTRDLSQIDCAQCLAIAVGNF 207 (254)
Q Consensus 128 ~~~~~~~n~~~~t~~~~f~~~l~~ll~~l~~~a~~~~~~~~~~~~~~~~~~~~vYglaQC~~DLs~~dC~~CL~~a~~~i 207 (254)
.+.+..++.+++++++.|++++..||.+|..+++.. ..+|++++.+..+.++||||+||+|||++++|+.||+.++.++
T Consensus 4 ~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~-~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~~~ 82 (108)
T 2e79_A 4 AFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFS-GYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82 (108)
T ss_dssp CEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGT-TSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred eeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcC-CcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHHHH
Confidence 445567777888888999999999999999888643 2457766544444579999999999999999999999999999
Q ss_pred cccCCCCcceEEEcCCeeEEeecCCc
Q 036866 208 PNFCNNKKGCRVLYSSCYVRYELYPF 233 (254)
Q Consensus 208 ~~~c~~~~ggri~~~~C~lRye~~~F 233 (254)
+++|++++||+|++++|+||||+++|
T Consensus 83 ~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 83 FSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHhCCCCceEEEECCCeEEEEeCCCC
Confidence 99999999999999999999999998
No 5
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=13.57 E-value=73 Score=16.71 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=8.5
Q ss_pred cCcceEEEcce
Q 036866 101 NQADARIWYDY 111 (254)
Q Consensus 101 ~~~ga~i~~~~ 111 (254)
.++|++.||.+
T Consensus 11 r~kgarlwyvg 21 (26)
T 1gff_3 11 KSKGARLWYVG 21 (26)
T ss_pred CCCceEEEEec
Confidence 46799999864
No 6
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}
Probab=8.82 E-value=2.9e+02 Score=24.31 Aligned_cols=28 Identities=7% Similarity=-0.067 Sum_probs=16.9
Q ss_pred CCCCCCCccCCCchHHHHHHHHHHHHHHhhh
Q 036866 23 EFCNKDSNVSGNGMISANIDNLLAELVAETA 53 (254)
Q Consensus 23 ~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~ 53 (254)
..|+... -...++..+......+++..+
T Consensus 25 ~~c~~~~---~~~~~~~~il~~HN~~R~~~A 52 (424)
T 3nt8_A 25 FGCSNSG---ITDSDRQAFLDFHNNARRRVA 52 (424)
T ss_dssp CCCCCCS---SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC---CCHHHHHHHHHHHHHHHHHHh
Confidence 4687542 233456667777777777664
No 7
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=8.23 E-value=1.2e+02 Score=20.87 Aligned_cols=9 Identities=56% Similarity=1.136 Sum_probs=6.0
Q ss_pred CcceEEecC
Q 036866 246 TSIKVVVFP 254 (254)
Q Consensus 246 ~~~~~~~~~ 254 (254)
..+|||+||
T Consensus 42 qelkvvifp 50 (109)
T 3u4z_A 42 QELKVVIFP 50 (109)
T ss_dssp SCEEEEECT
T ss_pred ceeEEEEch
Confidence 356777776
No 8
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=6.61 E-value=1.5e+02 Score=21.41 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHh
Q 036866 194 IDCAQCLAIAVG 205 (254)
Q Consensus 194 ~dC~~CL~~a~~ 205 (254)
+=||.||++=..
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 569999987443
No 9
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=6.44 E-value=1.5e+02 Score=21.30 Aligned_cols=12 Identities=33% Similarity=0.384 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHh
Q 036866 194 IDCAQCLAIAVG 205 (254)
Q Consensus 194 ~dC~~CL~~a~~ 205 (254)
+=|+.||+.=..
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 569999987443
No 10
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=6.28 E-value=4e+02 Score=14.79 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=7.3
Q ss_pred ChhHHH----HHHHHHHHh
Q 036866 1 MALLQS----LVLLLFLYI 15 (254)
Q Consensus 1 ~~~~~~----~~~~~~~~~ 15 (254)
|-|+++ |+..+.+++
T Consensus 3 mdivsl~WaalmvvfTfSl 21 (31)
T 1q90_N 3 PAIVQIGWAATCVMFSFSL 21 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeHHHHHHHHHhheee
Confidence 456655 444444443
Done!