Query 036866
Match_columns 254
No_of_seqs 176 out of 1447
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 10:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036866.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036866hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o35a1 a.293.1.1 (A:2-80) Hyp 7.2 63 0.0046 20.5 0.8 11 194-204 39-49 (79)
2 d1ucra_ a.4.5.45 (A:) Dissimil 5.2 2.3E+02 0.017 17.4 2.7 29 147-184 37-65 (74)
3 d1g25a_ g.44.1.1 (A:) TFIIH Ma 4.7 1.7E+02 0.012 16.9 1.8 20 194-213 29-48 (65)
4 d1wiga2 g.39.1.3 (A:33-73) Act 4.5 88 0.0064 17.2 0.1 10 103-112 18-27 (41)
5 d1ha9a_ g.3.2.1 (A:) Trypsin i 3.9 79 0.0057 16.3 -0.4 7 184-190 12-18 (34)
6 d1ansa_ g.11.1.1 (A:) Neurotox 3.7 89 0.0065 15.1 -0.2 17 209-225 2-18 (27)
7 d1rmda2 g.44.1.1 (A:1-86) V(D) 3.6 2.2E+02 0.016 17.7 1.7 19 194-212 44-62 (86)
8 d1ur6b_ g.44.1.1 (B:) Not-4 N- 3.4 2.2E+02 0.016 15.6 1.4 19 194-212 25-43 (52)
9 d1z5ye1 c.47.1.10 (E:49-184) T 3.4 2.8E+02 0.02 17.9 2.3 21 141-161 116-136 (136)
10 d2baia1 g.87.1.1 (A:1-32) Poly 3.3 3E+02 0.022 13.5 1.7 14 187-200 10-23 (32)
No 1
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=7.18 E-value=63 Score=20.53 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=8.4
Q ss_pred hhHHHHHHHHH
Q 036866 194 IDCAQCLAIAV 204 (254)
Q Consensus 194 ~dC~~CL~~a~ 204 (254)
+=||.||+.=.
T Consensus 39 GFCRNCLskWy 49 (79)
T d2o35a1 39 GFCRNCLSNWY 49 (79)
T ss_dssp SCCHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56999998743
No 2
>d1ucra_ a.4.5.45 (A:) Dissimilatory sulfite reductase DsvD {Desulfovibrio vulgaris [TaxId: 881]}
Probab=5.19 E-value=2.3e+02 Score=17.42 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHccCCCCCCccccccccCCCceEEEE
Q 036866 147 KELGALMDEIRSQAVVPKNEGLGKGETTLSPFVTLYAL 184 (254)
Q Consensus 147 ~~l~~ll~~l~~~a~~~~~~~~~~~~~~~~~~~~vYgl 184 (254)
+.++.+++.|+++-.. +-+.+++.|.|||
T Consensus 37 R~vKK~~~~lV~e~~L---------~ywSSGSTTMYgl 65 (74)
T d1ucra_ 37 REVKKILTALVNDEVL---------EYWSSGSTTMYGL 65 (74)
T ss_dssp HHHHHHHHHHHHTTSE---------EEEEETTEEEEEE
T ss_pred HHHHHHHHHHhccceE---------EEEcCCCcEEecc
Confidence 3445566666643321 1122456789997
No 3
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.68 E-value=1.7e+02 Score=16.94 Aligned_cols=20 Identities=15% Similarity=0.380 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHhhccccCCC
Q 036866 194 IDCAQCLAIAVGNFPNFCNN 213 (254)
Q Consensus 194 ~dC~~CL~~a~~~i~~~c~~ 213 (254)
.=|..||......-...||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 34899999988766556774
No 4
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.45 E-value=88 Score=17.18 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=7.2
Q ss_pred cceEEEccee
Q 036866 103 ADARIWYDYC 112 (254)
Q Consensus 103 ~ga~i~~~~C 112 (254)
+|..||.+.|
T Consensus 18 QGs~IWHP~C 27 (41)
T d1wiga2 18 QGSSIWHPAC 27 (41)
T ss_dssp ETTEEECTTH
T ss_pred cCCceeCCcc
Confidence 4667887777
No 5
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=3.89 E-value=79 Score=16.34 Aligned_cols=7 Identities=57% Similarity=1.165 Sum_probs=5.7
Q ss_pred EEeccCC
Q 036866 184 LVQCTRD 190 (254)
Q Consensus 184 laQC~~D 190 (254)
|-||++|
T Consensus 12 lkkcrrd 18 (34)
T d1ha9a_ 12 LKKCRRD 18 (34)
T ss_dssp CCBCSSG
T ss_pred HHHhccc
Confidence 6789888
No 6
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=3.72 E-value=89 Score=15.11 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=9.5
Q ss_pred ccCCCCcceEEEcCCee
Q 036866 209 NFCNNKKGCRVLYSSCY 225 (254)
Q Consensus 209 ~~c~~~~ggri~~~~C~ 225 (254)
+|||---||--|+..||
T Consensus 2 sccpcywggcpwgqncy 18 (27)
T d1ansa_ 2 SCCPCYWGGCPWGQNCY 18 (27)
T ss_dssp CSCCSTTTTCSSSCSSC
T ss_pred ccccccccCCccccccc
Confidence 45665555555555554
No 7
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.58 E-value=2.2e+02 Score=17.70 Aligned_cols=19 Identities=16% Similarity=0.590 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHhhccccCC
Q 036866 194 IDCAQCLAIAVGNFPNFCN 212 (254)
Q Consensus 194 ~dC~~CL~~a~~~i~~~c~ 212 (254)
.=|+.|+..-+..-...||
T Consensus 44 ~FC~~Ci~~~~~~~~~~CP 62 (86)
T d1rmda2 44 LFCRICILRCLKVMGSYCP 62 (86)
T ss_dssp EEEHHHHHHHHHHTCSBCT
T ss_pred hhhHHHHHHHHhhCCCcCc
Confidence 3599999988765444566
No 8
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.39 E-value=2.2e+02 Score=15.63 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHhhccccCC
Q 036866 194 IDCAQCLAIAVGNFPNFCN 212 (254)
Q Consensus 194 ~dC~~CL~~a~~~i~~~c~ 212 (254)
.-|..|+......-...||
T Consensus 25 ~~c~~C~~~w~~~~~~~CP 43 (52)
T d1ur6b_ 25 QICRFCWHRIRTDENGLCP 43 (52)
T ss_dssp CCCHHHHHHHTTTSCCBCT
T ss_pred ccchHHHHHHHhhcCCCCC
Confidence 4588899887765554566
No 9
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}
Probab=3.37 E-value=2.8e+02 Score=17.85 Aligned_cols=21 Identities=19% Similarity=0.526 Sum_probs=16.6
Q ss_pred ChhhHHHHHHHHHHHHHHHcc
Q 036866 141 DPKSFNKELGALMDEIRSQAV 161 (254)
Q Consensus 141 ~~~~f~~~l~~ll~~l~~~a~ 161 (254)
+...+...+.++|+++..+|+
T Consensus 116 ~~~~l~~~i~~ll~kl~~ea~ 136 (136)
T d1z5ye1 116 NPRVWEEEIKPLWEKYSKEAA 136 (136)
T ss_dssp CHHHHHHHTHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 456788899999999887663
No 10
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo encephalomyocarditis virus [TaxId: 12107]}
Probab=3.26 E-value=3e+02 Score=13.53 Aligned_cols=14 Identities=21% Similarity=0.895 Sum_probs=11.5
Q ss_pred ccCCCChhhHHHHH
Q 036866 187 CTRDLSQIDCAQCL 200 (254)
Q Consensus 187 C~~DLs~~dC~~CL 200 (254)
|.-.++-++|..|-
T Consensus 10 cahsmtfeecpkcs 23 (32)
T d2baia1 10 CAHSMTFEECPKCS 23 (32)
T ss_dssp CSSSSCGGGHHHHH
T ss_pred HHhhccHhhCcchh
Confidence 77788888998885
Done!