BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036868
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 137/308 (44%), Gaps = 28/308 (9%)
Query: 1 MEERR----RIPTIDLGEFPKQLKKLRE--------ASEEWGCFRVVNHKVSSTLMAEMK 48
+EE++ ++PTIDL +K+RE AS +WG ++NH + + LM +K
Sbjct: 36 LEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVK 95
Query: 49 QVVRELLDLPLEIKRR-----NTDVIAGSG-YVAPTQKNPLYEALGLYDMASSQAVADFC 102
+ E L +E K + T I G G +A L + +A + D
Sbjct: 96 KAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLS 155
Query: 103 SHLDASPHQRETIEKYAQAIQELALDLAHKLAESMGLMDSVFQ-------DWPCQFRINK 155
E +YA+ ++ LA + L+ +GL + + Q +IN
Sbjct: 156 IWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINY 215
Query: 156 YNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDI 215
Y P+ + GV+ HTD LT + + V GL++ G +V +P ++++++GD
Sbjct: 216 YPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLF-YEGKWVTAKCVPDSIVMHIGDT 273
Query: 216 ATVWSNGRLLNVKHRVQCKESAIRVSIATFLLGPKEAAVEAP-AEFVDAEHPRLYVPITF 274
+ SNG+ ++ HR + +R+S A F PK+ V P E V E P + P TF
Sbjct: 274 LEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTF 333
Query: 275 EDYRKLRL 282
+ + +L
Sbjct: 334 AQHIEHKL 341
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 137/308 (44%), Gaps = 28/308 (9%)
Query: 1 MEERR----RIPTIDLGEFPKQLKKLRE--------ASEEWGCFRVVNHKVSSTLMAEMK 48
+EE++ ++PTIDL +K+RE AS +WG ++NH + + LM +K
Sbjct: 37 LEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVK 96
Query: 49 QVVRELLDLPLEIKRR-----NTDVIAGSG-YVAPTQKNPLYEALGLYDMASSQAVADFC 102
+ E L +E K + T I G G +A L + +A + D
Sbjct: 97 KAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLS 156
Query: 103 SHLDASPHQRETIEKYAQAIQELALDLAHKLAESMGLMDSVFQ-------DWPCQFRINK 155
E +YA+ ++ LA + L+ +GL + + Q +IN
Sbjct: 157 IWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINY 216
Query: 156 YNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDI 215
Y P+ + GV+ HTD LT + + V GL++ G +V +P ++++++GD
Sbjct: 217 YPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLF-YEGKWVTAKCVPDSIVMHIGDT 274
Query: 216 ATVWSNGRLLNVKHRVQCKESAIRVSIATFLLGPKEAAVEAP-AEFVDAEHPRLYVPITF 274
+ SNG+ ++ HR + +R+S A F PK+ V P E V E P + P TF
Sbjct: 275 LEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTF 334
Query: 275 EDYRKLRL 282
+ + +L
Sbjct: 335 AQHIEHKL 342
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 28/286 (9%)
Query: 22 LREASEEWGCFRVVNHKVSSTLMAEMKQVVRELLDLPLEIKRRNTDVIAGS---GYVAPT 78
+++A E WG F +VNH + + +++ + E +R +++A G A
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXE--QRFKELVASKALEGVQAEV 81
Query: 79 QKNPLYEALGLYDMASSQAVADFCSHLDASPHQRETIEKYAQAIQELALDLAHKLAESMG 138
L + +++ D RE +A+ +++LA +L L E++G
Sbjct: 82 TDXDWESTFFLKHLP----ISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLG 137
Query: 139 L-----MDSVFQDWPCQF--RINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEV 191
L ++ + F +++ Y P+ G++ HTD+G + +L D+ V GL++
Sbjct: 138 LEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQL 197
Query: 192 MDRSGAFVPVDPLPGTLLVNLGDIATVWSNGRLLNVKHRVQCKESAIRVSIATF------ 245
+ + G ++ V P +++VNLGD V +NG+ +V HRV ++ R S+A+F
Sbjct: 198 L-KDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSD 256
Query: 246 -LLGPKEAAVEAPAEFVDAEHPRLYVPITFEDYRKLRLSTNLQAGE 290
++ P A VE AE E+ ++Y F+DY KL QA E
Sbjct: 257 AVIYPAPALVEKEAE----ENKQVYPKFVFDDYXKLYAGLKFQAKE 298
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 135/308 (43%), Gaps = 28/308 (9%)
Query: 1 MEERR----RIPTIDLGEFPKQLKKLRE--------ASEEWGCFRVVNHKVSSTLMAEMK 48
+EE++ ++PTIDL +K+RE AS +WG ++NH + + L +K
Sbjct: 37 LEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVK 96
Query: 49 QVVRELLDLPLEIKRR-----NTDVIAGSG-YVAPTQKNPLYEALGLYDMASSQAVADFC 102
+ E L +E K + T I G G +A L + +A + D
Sbjct: 97 KAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLS 156
Query: 103 SHLDASPHQRETIEKYAQAIQELALDLAHKLAESMGLMDSVFQ-------DWPCQFRINK 155
E +YA+ ++ LA + L+ +GL + + Q +IN
Sbjct: 157 IWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINY 216
Query: 156 YNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDI 215
Y P+ + GV+ HTD LT + + V GL++ G +V +P +++ ++GD
Sbjct: 217 YPKCPQPELALGVEAHTDVSALTFILHN-XVPGLQLF-YEGKWVTAKCVPDSIVXHIGDT 274
Query: 216 ATVWSNGRLLNVKHRVQCKESAIRVSIATFLLGPKEAAVEAP-AEFVDAEHPRLYVPITF 274
+ SNG+ ++ HR + +R+S A F PK+ V P E V E P + P TF
Sbjct: 275 LEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTF 334
Query: 275 EDYRKLRL 282
+ + +L
Sbjct: 335 AQHIEHKL 342
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Query: 145 QDWPCQFRINKYNFAPESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPL 204
QD R+ Y P+ H D +T+L E GGLEV+DR G ++P++P
Sbjct: 165 QDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE-GGLEVLDRDGQWLPINPP 223
Query: 205 PGTLLVNLGDIATVWSNGRLLNVKHRVQC----KESAIRVSIATFLLGPKEAAVEAPAEF 260
PG L++N+GD +N L + HRV + R S FL + ++
Sbjct: 224 PGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNC 283
Query: 261 VDAEHPRLYV-PITFEDYRKLRL 282
V AE+P Y IT +++ + RL
Sbjct: 284 VTAENPDRYPESITADEFLQQRL 306
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 161 ESVGSPGVQLHTDSGFLTILQDDENVGGLEVMDRSGAFVPVDPLPGTLLVNLGDIATVWS 220
E G+ H D +T+L N GL+V + G+++ V G +++N+GD S
Sbjct: 164 EEXGAIRAAAHEDINLITVLPT-ANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEAS 222
Query: 221 NGRLLNVKHRVQCKE----SAIRVSIATFL 246
+G + HRV E + R+S+ FL
Sbjct: 223 DGYFPSTSHRVINPEGTDKTKSRISLPLFL 252
>pdb|1WVQ|A Chain A, Structure Of Conserved Hypothetical Protein Pae2307 From
Pyrobaculum Aerophilum
pdb|1WVQ|B Chain B, Structure Of Conserved Hypothetical Protein Pae2307 From
Pyrobaculum Aerophilum
pdb|1WVQ|C Chain C, Structure Of Conserved Hypothetical Protein Pae2307 From
Pyrobaculum Aerophilum
Length = 167
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 53 ELLDLPLEIKRRNTDVIAGSGYVAPTQKNPLYEALGLYDMASSQAVADFCSHLDASPHQR 112
EL+D+P+ + T+VI G + T ++ LYEAL + S V + +AS +
Sbjct: 9 ELIDVPIP---QGTNVIIGQAHFIKTVED-LYEAL----VTSVPGVKFGIAFCEASGKRL 60
Query: 113 ETIEKYAQAIQELALDLAHKLAESMGLMDSVFQDWPCQFRINKYNFAPESV 163
E + ++ LA+DL K+A + + WP +N PE V
Sbjct: 61 VRHEANDEELRNLAIDLCKKIAAGXVFVIYIRNAWPINV-LNAIKNVPEVV 110
>pdb|2HUF|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUF|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase
pdb|2HUI|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUI|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Glyoxylic Acid
pdb|2HUU|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
pdb|2HUU|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
Aminotransferase In Complex With Alanine
Length = 393
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 26 SEEWGCF---RVVNHKVSSTLMAEMKQVV 51
+ WGCF R+ +H +SSTL+ +++ +
Sbjct: 245 GDYWGCFGRPRIYHHTISSTLLYGLREAI 273
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 78 TQKNPLYEALGLYDMASSQAVADFCSHLDASPHQRETIEKYAQAIQELALDLAHKLAESM 137
T K+ L+E L D+ +A+ HLD+S ++R I +IQ + H +
Sbjct: 401 TDKSSLFEELQSLDIF----LAELYKHLDSSSNERPDI----SSIQRRIKKVTHDMDMCY 452
Query: 138 GLMDSVFQ 145
G+M S+F+
Sbjct: 453 GMMGSLFR 460
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 78 TQKNPLYEALGLYDMASSQAVADFCSHLDASPHQRETIEKYAQAIQELALDLAHKLAESM 137
T K+ L+E L D+ +A+ HLD+S ++R I +IQ + H +
Sbjct: 402 TDKSSLFEELQSLDIF----LAELYKHLDSSSNERPDI----SSIQRRIKKVTHDMDMCY 453
Query: 138 GLMDSVFQ 145
G+M S+F+
Sbjct: 454 GMMGSLFR 461
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 78 TQKNPLYEALGLYDMASSQAVADFCSHLDASPHQRETIEKYAQAIQELALDLAHKLAESM 137
T K+ L+E L D+ +A+ HLD+S ++R I +IQ + H +
Sbjct: 402 TDKSSLFEELQSLDIF----LAELYKHLDSSSNERPDI----SSIQRRIKKVTHDMDMCY 453
Query: 138 GLMDSVFQ 145
G+M S+F+
Sbjct: 454 GMMGSLFR 461
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 78 TQKNPLYEALGLYDMASSQAVADFCSHLDASPHQRETIEKYAQAIQELALDLAHKLAESM 137
T K+ L+E L D+ +A+ HLD+S ++R I +IQ + H +
Sbjct: 402 TDKSSLFEELQSLDIF----LAELYKHLDSSSNERPDI----SSIQRRIKKVTHDMDMCY 453
Query: 138 GLMDSVFQ 145
G+M S+F+
Sbjct: 454 GMMGSLFR 461
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 171 HTDSGFLTILQDDENVGGLEVM--DRSGAFVPVDPLPGTLLVNLGDIATVWSNGRLLNVK 228
H D +T++Q G + + GAF + P +LV G IAT+ + G++ +
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 229 HRV 231
H V
Sbjct: 243 HHV 245
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 171 HTDSGFLTILQDDENVGGLEVM--DRSGAFVPVDPLPGTLLVNLGDIATVWSNGRLLNVK 228
H D +T++Q G + + GAF + P +LV G IAT+ + G++ +
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 229 HRV 231
H V
Sbjct: 243 HHV 245
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 171 HTDSGFLTILQDDENVGGLEVM--DRSGAFVPVDPLPGTLLVNLGDIATVWSNGRLLNVK 228
H D +T++Q G + + GAF + P +LV G IAT+ + G++ +
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 229 HRV 231
H V
Sbjct: 243 HHV 245
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 171 HTDSGFLTILQDDENVGGLEVM--DRSGAFVPVDPLPGTLLVNLGDIATVWSNGRLLNVK 228
H D +T++Q G + + GAF + P +LV G IAT+ + G++ +
Sbjct: 183 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 242
Query: 229 HRV 231
H V
Sbjct: 243 HHV 245
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 171 HTDSGFLTILQDDENVGGLEVM--DRSGAFVPVDPLPGTLLVNLGDIATVWSNGRLLNVK 228
H D +T++Q G + + GAF + P +LV G IAT+ + G++ +
Sbjct: 203 HYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR 262
Query: 229 HRV 231
H V
Sbjct: 263 HHV 265
>pdb|2PX7|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Thermus Thermophilus Hb8
pdb|2PX7|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Thermus Thermophilus Hb8
Length = 236
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 189 LEVMDRSGAFVPVDPLPGTLLVNLGD 214
LE RSGA VPV P+P TL+ G+
Sbjct: 128 LEAAQRSGAAVPVLPVPDTLMAPEGE 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,426,837
Number of Sequences: 62578
Number of extensions: 331135
Number of successful extensions: 763
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 22
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)