BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036869
         (141 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K0E|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
           From Formate Grown Crystals
 pdb|1K0E|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
           From Formate Grown Crystals
 pdb|1K0G|A Chain A, The Crystal Structure Of Aminodeoxychorismate Synthase
           From Phosphate Grown Crystals
 pdb|1K0G|B Chain B, The Crystal Structure Of Aminodeoxychorismate Synthase
           From Phosphate Grown Crystals
          Length = 453

 Score = 28.9 bits (63), Expect = 0.93,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 1   KESDSRKDRKSELKAFDDSKTSVKGIVDFAADRIPQIF-------IHEL-----PKLSDK 48
           K ++S KDR   L   D  +  +  +    + ++P++F       +H L      +L ++
Sbjct: 292 KLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPFPAVHHLVSTITAQLPEQ 351

Query: 49  SHSSDLYKSVFHVIDFQGIDKDESLRCHVIDKVRDS-----CQKWGF--FSGNVDS 97
            H+SDL ++ F      G  K  ++   +ID++        C   G+  F GN+D+
Sbjct: 352 LHASDLLRAAFPGGSITGAPKVRAM--EIIDELEPQRRNAWCGSIGYLSFCGNMDT 405


>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
 pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
          Length = 319

 Score = 27.7 bits (60), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 59 FHVIDFQGIDKDESLRCHVIDKVRDSCQKWGFF 91
          F +I    ++  E  R    + ++D+C+ WGFF
Sbjct: 4  FPIISLDKVNGVE--RAATXEXIKDACENWGFF 34


>pdb|4EF1|A Chain A, Crystal Structure Of A Pheromone Cob1
           PrecursorLIPOPROTEIN, YAEC Family (Ef2496) From
           Enterococcus Faecalis V583 At 1.90 A Resolution
 pdb|4EF1|B Chain B, Crystal Structure Of A Pheromone Cob1
           PrecursorLIPOPROTEIN, YAEC Family (Ef2496) From
           Enterococcus Faecalis V583 At 1.90 A Resolution
 pdb|4EF2|A Chain A, Crystal Structure Of A Pheromone Cob1
           PrecursorLIPOPROTEIN, YAEC Family (Ef2496) From
           Enterococcus Faecalis V583 At 2.10 A Resolution
 pdb|4EF2|B Chain B, Crystal Structure Of A Pheromone Cob1
           PrecursorLIPOPROTEIN, YAEC Family (Ef2496) From
           Enterococcus Faecalis V583 At 2.10 A Resolution
          Length = 246

 Score = 26.9 bits (58), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 94  NVDSLRRLHEKDEELKQEFYSRDETRSVTYNSNFDLYQA 132
           N   L+  HE D  +    Y  +E  +V  NSNF + Q 
Sbjct: 146 NTKKLKFNHESDPAIXTTLYDNEEGAAVLINSNFAVDQG 184


>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
          Length = 921

 Score = 26.2 bits (56), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 95  VDSLRRLHEKDEELK--QEFYSRDETRSVTYNSNFD 128
           +DSL+ L     +L+  +EF S DET+  TYN  +D
Sbjct: 475 IDSLKELGITTVQLQPVEEFNSIDETQPDTYNWGYD 510


>pdb|2D7U|A Chain A, Crystal Structure Of Hypothetical Adenylosuccinate
           Synthetase, Ph0438 From Pyrococcus Horikoshii Ot3
          Length = 339

 Score = 25.8 bits (55), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 15/46 (32%)

Query: 35  PQIFIHELPKLSDKSHSSDLYKSVFHVIDFQGIDKDESLRCHVIDK 80
           P++F HEL +L D           F+V D  GID     RC +I++
Sbjct: 78  PEVFFHELEQLKD-----------FNVKDRVGID----YRCAIIEE 108


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,253,763
Number of Sequences: 62578
Number of extensions: 167213
Number of successful extensions: 371
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 10
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)