BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036871
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 184/395 (46%), Gaps = 39/395 (9%)
Query: 3 SKVPQLHVFFFPFMAHGHMIPIVDMAK-LFASRGVKASVITTPANGPYVSKSVERANEMG 61
SK P HV P GH+IP+V+ AK L G+ + + GP +R
Sbjct: 4 SKTP--HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIA-GEGP--PSKAQRTVLDS 58
Query: 62 IELDVKTIKFPSVEAGLPEGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHK-P 120
+ + ++ P V+ +L + T + + + + +L++ + + + P
Sbjct: 59 LPSSISSVFLPPVD------LTDLSSSTR-IESRISLTVTRSNPELRKVFDSFVEGGRLP 111
Query: 121 DCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPHKNVSSD----SEPF 176
LV D+F A D A +F +P +F+ T+ L S L L + + VS + +EP
Sbjct: 112 TALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVL--SFFLHLPKLDETVSCEFRELTEPL 169
Query: 177 VMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYAD 236
++P G + + D QD D+ + LL + G+ VN+F+ELEP
Sbjct: 170 MLP---GCVPVAGKDFLD-PAQDRKDDAYKWLLHNTKRYK-EAEGILVNTFFELEP---- 220
Query: 237 HYRKALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSI 296
+ KAL PV KQ +E ECL+WL+++ SV+Y+ FGS
Sbjct: 221 NAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQT--EESECLKWLDNQPLGSVLYVSFGSG 278
Query: 297 ANFTSAQLMEIATGLEASRRNFIWVVRRNK--------NDGGEEEKEAWLPEGFEKRMKG 348
T QL E+A GL S + F+WV+R + + + +LP GF +R K
Sbjct: 279 GTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKK 338
Query: 349 KGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383
+G +I WAPQ +L H + GGF+THCGWNST+E+
Sbjct: 339 RGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLES 373
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/388 (26%), Positives = 168/388 (43%), Gaps = 23/388 (5%)
Query: 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKT 68
HV P+ GH+ P+ +AKL RG + + T N + KS G
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGF----TD 65
Query: 69 IKFPSVEAGLP--EGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVAD 126
F S+ GL EG ++ + + + F+ +L L CLV+D
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSD 125
Query: 127 IFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPHKNVSSDSEPFV--------M 178
+ AA +F +P +++ +S SL + + E ++ +
Sbjct: 126 CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKV 185
Query: 179 PHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHY 238
PG + DF++ ++ + D + + +N+F ELE +
Sbjct: 186 DWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINAL 245
Query: 239 RKALGRRAWHIGPV-SLCNRNFEDKALWGKQASI--DEQECLRWLNSKQPNSVVYICFGS 295
+ + IGP+ SL + + L +++ ++ ECL WL SK+P SVVY+ FGS
Sbjct: 246 SSTIPS-IYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGS 304
Query: 296 IANFTSAQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRG 355
T QL+E A GL +++F+W++R + GG F + +GL I
Sbjct: 305 TTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGG----SVIFSSEFTNEIADRGL-IAS 359
Query: 356 WAPQVLILDHEAVGGFVTHCGWNSTIEA 383
W PQ +L+H ++GGF+THCGWNST E+
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTES 387
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 150/324 (46%), Gaps = 37/324 (11%)
Query: 69 IKFPSVEAGLPEGC-------ENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPD 121
IK + G+PEG E+++ T + V A + P+
Sbjct: 64 IKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPV---------S 114
Query: 122 CLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPHKNVS--SDSEPFVMP 179
CLVAD F +A D AA+ G+ L F SL + VS E ++
Sbjct: 115 CLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLN 174
Query: 180 HFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYR 239
PG K+ L + + ++ FSR+L + ++ V +NSF EL+ + + +
Sbjct: 175 FIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLK 234
Query: 240 KALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANF 299
L + +IGP +L + CL+WL ++P SVVYI FG++
Sbjct: 235 SKL-KTYLNIGPFNLITP---------PPVVPNTTGCLQWLKERKPTSVVYISFGTVTTP 284
Query: 300 TSAQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQ 359
A+++ ++ LEASR FIW +R ++ LPEGF ++ +G G+++ WAPQ
Sbjct: 285 PPAEVVALSEALEASRVPFIWSLR--------DKARVHLPEGFLEKTRGYGMVVP-WAPQ 335
Query: 360 VLILDHEAVGGFVTHCGWNSTIEA 383
+L HEAVG FVTHCGWNS E+
Sbjct: 336 AEVLAHEAVGAFVTHCGWNSLWES 359
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 175/390 (44%), Gaps = 48/390 (12%)
Query: 2 GSKVPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMG 61
G+ + + V FPF H P++ + K A+ K + R+NE
Sbjct: 10 GNNLLHVAVLAFPFGTHA--APLLSLVKKIATEAPKVTFSFFCTTTTN-DTLFSRSNEF- 65
Query: 62 IELDVKTIKFPSVEAGLPEGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPD 121
+ IK+ +V GLP+G +++ +E I F+ A +QE + ++ + +
Sbjct: 66 ----LPNIKYYNVHDGLPKGY-----VSSGNPREPIFLFIKA---MQENFKHVIDEAVAE 113
Query: 122 ------CLVADIFFPWATDAAAKFG---IPRLVFHGTSFFSLCASNCLALYEPHKNVSSD 172
CLV D FF + D A + +P S + ++ + K V
Sbjct: 114 TGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDV 173
Query: 173 SEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEP 232
V+P FP +L + LP+ V +D+ D F+ +L + R+ VA+NSF + P
Sbjct: 174 KSIDVLPGFP---ELKASDLPEGVIKDI-DVPFATMLHKMGLELPRANAVAINSFATIHP 229
Query: 233 AYADHYRKALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYIC 292
+ + ++GP +L ++ DE CL WL+ + +SVVYI
Sbjct: 230 LIENELNSKF-KLLLNVGPFNLTTP---------QRKVSDEHGCLEWLDQHENSSVVYIS 279
Query: 293 FGSIANFTSAQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLI 352
FGS+ +L +A LE FIW R G +EK LP+GF +R K KG I
Sbjct: 280 FGSVVTPPPHELTALAESLEECGFPFIWSFR-----GDPKEK---LPKGFLERTKTKGKI 331
Query: 353 IRGWAPQVLILDHEAVGGFVTHCGWNSTIE 382
+ WAPQV IL H +VG F+TH GWNS +E
Sbjct: 332 V-AWAPQVEILKHSSVGVFLTHSGWNSVLE 360
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 111/387 (28%), Positives = 176/387 (45%), Gaps = 45/387 (11%)
Query: 10 VFFFPFMAHGHMIPIVDMAKLFAS--RGVKASVITTPANG-PYVSKSVERANEMGIELDV 66
+ F P GH+ ++ AKL + + + +V G P+ ++ + + +
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV--LASQPQI 69
Query: 67 KTIKFPSVEAGLPEGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVAD 126
+ I P VE E ++ + + LI V AT K + +K LV D
Sbjct: 70 QLIDLPEVEPPPQELLKSPEFYILTFLESLI-PHVKATIKT-------ILSNKVVGLVLD 121
Query: 127 IFFPWATDAAAKFGIPRLVF--HGTSFFSLCAS-NCLALYEPHKNVSSDSEPFVMPHFPG 183
F D +FGIP +F F SL S + E + D + +P
Sbjct: 122 FFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISN 181
Query: 184 EIKLTRNQLPDFV-KQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKAL 242
++ N LPD +D G + +L + D+ G+ VN+F +LE + D AL
Sbjct: 182 QV--PSNVLPDACFNKDGGYIAYYKLAERFRDTK----GIIVNTFSDLEQSSID----AL 231
Query: 243 GRRAWHIGPVSLCNRNFEDKALWGKQASIDEQE---CLRWLNSKQPNSVVYICFGSIA-N 298
I P+ + K +D+ + L+WL+ + SVV++CFGS+ +
Sbjct: 232 YDHDEKIPPIYAVGPLLDLKG--QPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVS 289
Query: 299 FTSAQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMK--GKGLIIRGW 356
F +Q+ EIA GL+ S F+W EK+ + PEGF + M+ GKG+I GW
Sbjct: 290 FGPSQIREIALGLKHSGVRFLW--------SNSAEKKVF-PEGFLEWMELEGKGMIC-GW 339
Query: 357 APQVLILDHEAVGGFVTHCGWNSTIEA 383
APQV +L H+A+GGFV+HCGWNS +E+
Sbjct: 340 APQVEVLAHKAIGGFVSHCGWNSILES 366
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 111/387 (28%), Positives = 176/387 (45%), Gaps = 45/387 (11%)
Query: 10 VFFFPFMAHGHMIPIVDMAKLFAS--RGVKASVITTPANG-PYVSKSVERANEMGIELDV 66
+ F P GH+ ++ AKL + + + +V G P+ ++ + + +
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV--LASQPQI 69
Query: 67 KTIKFPSVEAGLPEGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVAD 126
+ I P VE E ++ + + LI V AT K + +K LV D
Sbjct: 70 QLIDLPEVEPPPQELLKSPEFYILTFLESLI-PHVKATIKT-------ILSNKVVGLVLD 121
Query: 127 IFFPWATDAAAKFGIPRLVF--HGTSFFSLCAS-NCLALYEPHKNVSSDSEPFVMPHFPG 183
F D +FGIP +F F SL S + E + D + +P
Sbjct: 122 FFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISN 181
Query: 184 EIKLTRNQLPDFV-KQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKAL 242
++ N LPD +D G + +L + D+ G+ VN+F +LE + D AL
Sbjct: 182 QV--PSNVLPDACFNKDGGYIAYYKLAERFRDTK----GIIVNTFSDLEQSSID----AL 231
Query: 243 GRRAWHIGPVSLCNRNFEDKALWGKQASIDEQE---CLRWLNSKQPNSVVYICFGSIA-N 298
I P+ + K +D+ + L+WL+ + SVV++CFGS+ +
Sbjct: 232 YDHDEKIPPIYAVGPLLDLKG--QPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVS 289
Query: 299 FTSAQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMK--GKGLIIRGW 356
F +Q+ EIA GL+ S F+W EK+ + PEGF + M+ GKG+I GW
Sbjct: 290 FGPSQIREIALGLKHSGVRFLW--------SNSAEKKVF-PEGFLEWMELEGKGMIC-GW 339
Query: 357 APQVLILDHEAVGGFVTHCGWNSTIEA 383
APQV +L H+A+GGFV+HCGWNS +E+
Sbjct: 340 APQVEVLAHKAIGGFVSHCGWNSILES 366
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDV 66
Q H+ F HGH+ P + + A RG + + +TTP V + G E+ +
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAA-------GAEVVL 56
Query: 67 KTIKFPSVEAGLPEGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVAD 126
+F + +PE + DA T +L + +V + E+ L D+ PD +V D
Sbjct: 57 YKSEFDTFH--VPEVVKQEDAET-----QLHLVYVRENVAILRAAEEALGDNPPDLVVYD 109
Query: 127 IF 128
+F
Sbjct: 110 VF 111
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 18/111 (16%)
Query: 274 QECLRWLNSKQPNSVVYICFGS-IANFTSAQLMEIATGLEASRRNFIWVVRRNKNDGGEE 332
+E ++ S N VV GS ++N T + IA+ L + +W NK D
Sbjct: 9 KEXEDFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRFDGNKPD---- 64
Query: 333 EKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383
G R+ W PQ +L H F+TH G N EA
Sbjct: 65 ------TLGLNTRL-------YKWIPQNDLLGHPKTRAFITHGGANGIYEA 102
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 3 SKVPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGI 62
+ V H+ FF HGH+ P + + + +RG + S T + V+ A +
Sbjct: 8 ASVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDE----FAAQVKAAGATPV 63
Query: 63 ELDVKTIKFPSVEAGLPEGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDC 122
D K + E PE E+ + F+ ++ LE D +PD
Sbjct: 64 VYDSILPKESNPEESWPEDQESAMGL-----------FLDEAVRVLPQLEDAYADDRPDL 112
Query: 123 LVADI 127
+V DI
Sbjct: 113 IVYDI 117
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 174 EPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPA 233
E F+ P P E + ++ LPD +GD + + L + I DSDL +V+ + A
Sbjct: 415 ERFLGPEVPDEEMIWQDPLPDADYDLIGDEEIAELKEEILDSDL-----SVSQLVKTAWA 469
Query: 234 YADHYRKALGR 244
A YR + R
Sbjct: 470 SASTYRDSDKR 480
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 174 EPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPA 233
E F+ P P E + ++ LPD +GD + + L + I DSDL +V+ + A
Sbjct: 415 ERFLGPEVPDEEMIWQDPLPDADYDLIGDEEIAELKEEILDSDL-----SVSQLVKTAWA 469
Query: 234 YADHYRKALGR 244
A YR + R
Sbjct: 470 SASTYRDSDKR 480
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 174 EPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPA 233
E F+ P P E + ++ LPD +GD + + L + I DSDL +V+ + A
Sbjct: 415 ERFLGPEVPDEEMIWQDPLPDADYDLIGDEEIAELKEEILDSDL-----SVSQLVKTAWA 469
Query: 234 YADHYRKALGR 244
A YR + R
Sbjct: 470 SASTYRDSDKR 480
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 174 EPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPA 233
E F+ P P E + ++ LPD +GD + + L + I DSDL +V+ + A
Sbjct: 415 ERFLGPEVPDEEMIWQDPLPDADYDLIGDEEIAELKEEILDSDL-----SVSQLVKTAWA 469
Query: 234 YADHYRKALGR 244
A YR + R
Sbjct: 470 SASTYRDSDKR 480
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 174 EPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPA 233
E F+ P P E + ++ LPD +GD + + L + I DSDL +V+ + A
Sbjct: 415 ERFLGPEVPDEEMIWQDPLPDADYDLIGDEEIAELKEEILDSDL-----SVSQLVKTAWA 469
Query: 234 YADHYRKALGR 244
A YR + R
Sbjct: 470 SASTYRDSDKR 480
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 96 LIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAK----------FGIPRLV 145
L++K+ T ++Q+ +EQ++ H+P L P+ TDA FG+P V
Sbjct: 294 LMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPY-TDAVIHEIQRLGDLIPFGVPHTV 352
Query: 146 FHGTSF 151
T F
Sbjct: 353 TKDTQF 358
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 96 LIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAK----------FGIPRLV 145
L++K+ T ++Q+ +EQ++ H+P L P+ TDA FG+P V
Sbjct: 294 LMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPY-TDAVIHEIQRLGDLIPFGVPHTV 352
Query: 146 FHGTSF 151
T F
Sbjct: 353 TKDTQF 358
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 96 LIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAK----------FGIPRLV 145
L++K+ T ++Q+ +EQ++ H+P L P+ TDA FG+P V
Sbjct: 294 LMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPY-TDAVIHEIQRLGDLIPFGVPHTV 352
Query: 146 FHGTSF 151
T F
Sbjct: 353 TKDTQF 358
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 96 LIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAK----------FGIPRLV 145
L++K+ T ++Q+ +EQ++ H+P L P+ TDA FG+P V
Sbjct: 294 LMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPY-TDAVIHEIQRLGDLIPFGVPHTV 352
Query: 146 FHGTSF 151
T F
Sbjct: 353 TKDTQF 358
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 54 VERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEVNKELIVKFVGATTK 106
+E+A EMG+E +I FP+V AG+ GC+ + E + E + F G+ K
Sbjct: 124 LEKAEEMGVE----SIAFPAVSAGIY-GCDAEKVV--ETSLEAVKNFKGSAVK 169
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 1 MGSKVPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44
M ++ H+ F AHGH+ P +++ + +RG + + P
Sbjct: 1 MTTQTTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPP 44
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 96 LIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAK----------FGIPRLV 145
L++K+ T ++Q+ +EQ++ H+P L P+ TDA FG+P V
Sbjct: 294 LMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPY-TDAVIHEIQRLGDLIPFGVPHTV 352
Query: 146 FHGTSF 151
T F
Sbjct: 353 TKDTQF 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,791,402
Number of Sequences: 62578
Number of extensions: 495339
Number of successful extensions: 1277
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 33
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)