Query 036871
Match_columns 383
No_of_seqs 132 out of 1271
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 06:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 1.1E-51 2.4E-56 382.3 35.0 370 6-383 7-378 (491)
2 PLN03007 UDP-glucosyltransfera 100.0 1.2E-50 2.6E-55 379.7 36.4 371 6-383 4-379 (482)
3 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.9E-50 6.4E-55 373.7 34.1 360 6-383 8-377 (477)
4 PLN02208 glycosyltransferase f 100.0 2.2E-50 4.7E-55 371.1 32.4 342 6-383 3-345 (442)
5 PLN02670 transferase, transfer 100.0 1.3E-49 2.8E-54 366.9 33.2 361 6-383 5-373 (472)
6 PLN00414 glycosyltransferase f 100.0 4.2E-48 9E-53 356.4 32.6 341 6-383 3-346 (446)
7 PLN02764 glycosyltransferase f 100.0 6.8E-48 1.5E-52 352.6 33.5 345 6-383 4-351 (453)
8 PLN03004 UDP-glycosyltransfera 100.0 9.5E-48 2.1E-52 353.0 31.5 352 7-383 3-368 (451)
9 PLN02992 coniferyl-alcohol glu 100.0 1.3E-47 2.8E-52 353.8 32.1 346 6-383 4-372 (481)
10 PLN02173 UDP-glucosyl transfer 100.0 4.4E-47 9.6E-52 348.4 32.5 336 4-383 2-351 (449)
11 PLN02555 limonoid glucosyltran 100.0 5.2E-47 1.1E-51 350.8 32.5 356 1-383 1-371 (480)
12 PLN02410 UDP-glucoronosyl/UDP- 100.0 6E-47 1.3E-51 349.2 32.5 344 1-383 1-358 (451)
13 PLN02207 UDP-glycosyltransfera 100.0 5.5E-47 1.2E-51 349.1 31.8 353 5-383 1-366 (468)
14 PLN02210 UDP-glucosyl transfer 100.0 6.4E-47 1.4E-51 350.4 32.1 343 6-383 7-358 (456)
15 PLN00164 glucosyltransferase; 100.0 1.6E-46 3.6E-51 349.8 33.2 348 6-383 2-373 (480)
16 PLN02562 UDP-glycosyltransfera 100.0 2E-46 4.3E-51 346.8 32.8 339 6-383 5-362 (448)
17 PLN03015 UDP-glucosyl transfer 100.0 2.5E-46 5.4E-51 343.3 32.3 346 6-383 2-369 (470)
18 PLN02152 indole-3-acetate beta 100.0 6.5E-46 1.4E-50 341.3 30.9 345 6-383 2-361 (455)
19 PLN02448 UDP-glycosyltransfera 100.0 4.4E-45 9.5E-50 340.5 31.9 339 5-383 8-357 (459)
20 PLN02167 UDP-glycosyltransfera 100.0 1.9E-44 4.2E-49 336.8 32.4 358 5-383 1-374 (475)
21 PLN02554 UDP-glycosyltransfera 100.0 1.8E-44 3.9E-49 337.5 32.1 350 7-383 2-376 (481)
22 PHA03392 egt ecdysteroid UDP-g 100.0 7.1E-40 1.5E-44 307.4 23.2 327 6-383 19-380 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2.6E-41 5.6E-46 322.6 -2.6 316 9-383 2-357 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 5.7E-32 1.2E-36 250.5 19.2 299 13-383 1-307 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 3E-32 6.5E-37 253.5 14.5 308 8-383 1-320 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 1.7E-31 3.8E-36 255.1 9.7 329 7-383 5-370 (496)
27 COG1819 Glycosyl transferases, 99.9 3.8E-28 8.3E-33 222.3 9.4 308 7-383 1-316 (406)
28 PF13528 Glyco_trans_1_3: Glyc 99.6 5.5E-14 1.2E-18 126.7 20.1 260 8-383 1-266 (318)
29 PRK12446 undecaprenyldiphospho 99.6 6.7E-13 1.5E-17 120.4 22.2 262 7-383 1-268 (352)
30 TIGR00661 MJ1255 conserved hyp 99.5 9.6E-13 2.1E-17 118.5 18.4 119 9-148 1-121 (321)
31 PF03033 Glyco_transf_28: Glyc 99.5 3.8E-14 8.3E-19 111.4 5.5 122 10-152 1-133 (139)
32 PRK00726 murG undecaprenyldiph 99.1 1.4E-08 3.1E-13 93.1 21.8 115 7-145 1-119 (357)
33 COG0707 MurG UDP-N-acetylgluco 99.1 1.4E-08 3E-13 91.5 19.0 115 9-145 2-119 (357)
34 cd03785 GT1_MurG MurG is an N- 99.1 4.2E-08 9.1E-13 89.7 22.1 115 9-145 1-117 (350)
35 TIGR03590 PseG pseudaminic aci 98.9 2.9E-07 6.4E-12 80.9 19.8 82 287-383 171-256 (279)
36 COG4671 Predicted glycosyl tra 98.8 6E-07 1.3E-11 77.8 15.8 107 6-131 8-118 (400)
37 PRK13609 diacylglycerol glucos 98.7 6.6E-07 1.4E-11 82.8 16.4 85 285-383 201-289 (380)
38 TIGR01133 murG undecaprenyldip 98.7 4.3E-06 9.3E-11 76.4 20.3 115 9-145 2-118 (348)
39 TIGR00215 lpxB lipid-A-disacch 98.6 1.3E-05 2.8E-10 74.1 20.3 112 8-147 6-120 (385)
40 PRK00025 lpxB lipid-A-disaccha 98.3 3.8E-05 8.3E-10 71.1 17.2 111 8-146 2-115 (380)
41 PLN02871 UDP-sulfoquinovose:DA 98.3 0.0012 2.7E-08 62.8 26.2 112 5-147 56-175 (465)
42 PRK13608 diacylglycerol glucos 98.0 0.00029 6.3E-09 65.4 16.3 85 285-383 201-289 (391)
43 cd03823 GT1_ExpE7_like This fa 97.9 0.0044 9.4E-08 56.3 22.1 119 9-147 1-127 (359)
44 cd03814 GT1_like_2 This family 97.9 0.0052 1.1E-07 56.0 22.6 28 18-45 14-41 (364)
45 PF04007 DUF354: Protein of un 97.8 0.0079 1.7E-07 53.9 21.0 112 9-150 2-113 (335)
46 cd03794 GT1_wbuB_like This fam 97.8 0.012 2.7E-07 53.8 23.2 38 9-46 1-42 (394)
47 COG3980 spsG Spore coat polysa 97.7 0.0041 8.8E-08 52.9 15.8 93 8-147 1-100 (318)
48 cd03817 GT1_UGDG_like This fam 97.7 0.029 6.2E-07 51.1 23.4 38 9-46 1-42 (374)
49 cd03800 GT1_Sucrose_synthase T 97.7 0.011 2.5E-07 54.7 20.9 107 18-147 21-131 (398)
50 PLN02605 monogalactosyldiacylg 97.7 0.002 4.3E-08 59.7 15.6 34 348-383 264-298 (382)
51 cd03801 GT1_YqgM_like This fam 97.6 0.026 5.7E-07 51.0 22.1 101 18-148 14-116 (374)
52 cd04962 GT1_like_5 This family 97.6 0.018 4E-07 52.8 21.0 38 8-45 1-39 (371)
53 cd03808 GT1_cap1E_like This fa 97.5 0.046 9.9E-07 49.3 21.5 107 9-147 1-110 (359)
54 cd03796 GT1_PIG-A_like This fa 97.4 0.07 1.5E-06 49.7 22.6 111 9-146 1-119 (398)
55 PF04101 Glyco_tran_28_C: Glyc 97.3 1.1E-05 2.4E-10 65.3 -4.3 84 288-383 1-88 (167)
56 cd03802 GT1_AviGT4_like This f 97.2 0.034 7.4E-07 50.1 17.4 105 8-146 1-113 (335)
57 cd03795 GT1_like_4 This family 97.2 0.18 3.9E-06 45.8 23.2 31 17-47 13-43 (357)
58 cd03798 GT1_wlbH_like This fam 97.1 0.2 4.2E-06 45.4 24.2 31 17-47 13-43 (377)
59 PF13477 Glyco_trans_4_2: Glyc 97.1 0.0063 1.4E-07 47.3 9.8 101 9-146 1-105 (139)
60 PF06722 DUF1205: Protein of u 97.0 0.001 2.2E-08 47.7 4.1 55 273-327 27-86 (97)
61 cd03825 GT1_wcfI_like This fam 97.0 0.26 5.6E-06 44.9 21.2 37 8-44 1-39 (365)
62 cd03811 GT1_WabH_like This fam 96.9 0.13 2.9E-06 46.1 18.5 38 9-46 1-40 (353)
63 cd03816 GT1_ALG1_like This fam 96.9 0.024 5.1E-07 53.2 13.7 122 6-147 2-128 (415)
64 cd03818 GT1_ExpC_like This fam 96.9 0.025 5.5E-07 52.6 13.6 116 9-149 1-118 (396)
65 PF02350 Epimerase_2: UDP-N-ac 96.8 0.0074 1.6E-07 54.8 9.0 85 285-383 179-273 (346)
66 PF13579 Glyco_trans_4_4: Glyc 96.8 0.0037 8.1E-08 49.5 6.1 95 22-147 5-103 (160)
67 cd03786 GT1_UDP-GlcNAc_2-Epime 96.8 0.11 2.4E-06 47.6 16.6 90 285-383 197-292 (363)
68 TIGR03568 NeuC_NnaA UDP-N-acet 96.7 0.24 5.3E-06 45.5 18.3 89 286-383 201-296 (365)
69 cd03820 GT1_amsD_like This fam 96.7 0.45 9.8E-06 42.5 21.8 37 10-46 2-41 (348)
70 cd03805 GT1_ALG2_like This fam 96.6 0.58 1.3E-05 43.3 23.7 38 8-45 1-40 (392)
71 cd04955 GT1_like_6 This family 96.5 0.61 1.3E-05 42.4 23.4 38 9-46 1-43 (363)
72 TIGR03492 conserved hypothetic 96.5 0.31 6.8E-06 45.3 17.8 30 119-149 93-122 (396)
73 KOG3349 Predicted glycosyltran 96.4 0.01 2.2E-07 45.4 5.7 86 286-382 3-95 (170)
74 cd03799 GT1_amsK_like This is 96.3 0.83 1.8E-05 41.4 23.3 37 9-45 1-38 (355)
75 PRK14089 ipid-A-disaccharide s 96.1 0.68 1.5E-05 42.1 16.8 26 7-33 1-26 (347)
76 PRK10307 putative glycosyl tra 95.9 0.15 3.3E-06 47.7 12.5 38 8-45 1-42 (412)
77 cd03821 GT1_Bme6_like This fam 95.9 1.3 2.8E-05 40.1 22.9 38 9-46 1-42 (375)
78 PRK05749 3-deoxy-D-manno-octul 95.8 1 2.2E-05 42.4 17.5 99 9-147 51-154 (425)
79 PRK09922 UDP-D-galactose:(gluc 95.7 0.91 2E-05 41.6 16.6 38 8-45 1-43 (359)
80 PF12000 Glyco_trans_4_3: Gkyc 95.7 0.19 4.2E-06 40.3 10.3 94 33-148 1-96 (171)
81 cd05844 GT1_like_7 Glycosyltra 95.4 2 4.4E-05 39.2 18.4 38 110-147 73-112 (367)
82 cd03822 GT1_ecORF704_like This 95.2 2.3 5.1E-05 38.4 23.6 37 9-45 1-40 (366)
83 TIGR03449 mycothiol_MshA UDP-N 95.2 2.7 5.9E-05 39.1 24.9 29 17-45 19-47 (405)
84 PLN02846 digalactosyldiacylgly 94.9 0.23 4.9E-06 46.9 9.8 40 6-45 3-47 (462)
85 TIGR02470 sucr_synth sucrose s 94.8 0.69 1.5E-05 46.5 13.3 30 118-147 384-415 (784)
86 COG1817 Uncharacterized protei 94.4 0.76 1.7E-05 40.2 10.8 109 15-151 7-115 (346)
87 PF01975 SurE: Survival protei 94.2 0.18 3.8E-06 41.6 6.6 42 8-50 1-42 (196)
88 cd03819 GT1_WavL_like This fam 94.1 0.37 8.1E-06 43.7 9.4 98 17-147 9-108 (355)
89 PRK00654 glgA glycogen synthas 93.9 0.89 1.9E-05 43.4 11.7 37 8-44 1-43 (466)
90 PRK01021 lpxB lipid-A-disaccha 93.8 7.1 0.00015 38.1 19.9 42 107-148 298-344 (608)
91 TIGR02472 sucr_P_syn_N sucrose 93.8 0.65 1.4E-05 44.0 10.5 109 21-147 29-144 (439)
92 PLN00142 sucrose synthase 93.6 0.6 1.3E-05 47.0 10.2 32 118-149 407-440 (815)
93 PLN02275 transferase, transfer 93.5 3.3 7.2E-05 38.1 14.5 40 7-46 4-44 (371)
94 TIGR02468 sucrsPsyn_pln sucros 93.4 1 2.2E-05 46.6 11.7 40 6-45 168-224 (1050)
95 cd01635 Glycosyltransferase_GT 93.3 0.66 1.4E-05 38.7 9.0 26 17-42 12-37 (229)
96 TIGR02095 glgA glycogen/starch 92.8 1.9 4.2E-05 41.2 12.3 38 8-45 1-44 (473)
97 PF13439 Glyco_transf_4: Glyco 92.8 0.59 1.3E-05 37.3 7.6 30 17-46 11-40 (177)
98 cd03812 GT1_CapH_like This fam 92.7 1.7 3.6E-05 39.5 11.4 39 9-47 1-41 (358)
99 cd03791 GT1_Glycogen_synthase_ 92.5 2.6 5.7E-05 40.2 12.8 25 21-45 19-43 (476)
100 COG0381 WecB UDP-N-acetylgluco 92.4 1.1 2.3E-05 40.7 9.0 116 6-147 2-123 (383)
101 PRK02261 methylaspartate mutas 92.4 0.53 1.1E-05 36.4 6.3 49 5-53 1-49 (137)
102 COG1519 KdtA 3-deoxy-D-manno-o 92.3 9.3 0.0002 35.2 19.5 99 9-147 50-153 (419)
103 PF02684 LpxB: Lipid-A-disacch 91.9 4.3 9.3E-05 37.3 12.5 110 10-147 1-115 (373)
104 cd03809 GT1_mtfB_like This fam 91.7 9.8 0.00021 34.3 18.5 29 18-46 15-43 (365)
105 COG5017 Uncharacterized conser 91.1 0.46 1E-05 35.9 4.5 74 289-382 2-80 (161)
106 cd03806 GT1_ALG11_like This fa 90.6 15 0.00033 34.5 24.3 29 19-47 15-45 (419)
107 PF08660 Alg14: Oligosaccharid 89.9 7.8 0.00017 31.2 11.0 34 115-148 88-129 (170)
108 PF02951 GSH-S_N: Prokaryotic 89.7 0.53 1.1E-05 35.2 3.9 39 8-46 1-42 (119)
109 COG0496 SurE Predicted acid ph 89.7 3 6.4E-05 35.7 8.7 30 20-50 12-41 (252)
110 cd03792 GT1_Trehalose_phosphor 89.6 2.5 5.4E-05 38.9 9.2 37 9-45 1-39 (372)
111 PRK08057 cobalt-precorrin-6x r 89.5 3.7 8E-05 35.3 9.4 93 7-148 2-100 (248)
112 COG1618 Predicted nucleotide k 89.4 2.4 5.2E-05 33.5 7.3 42 5-46 3-44 (179)
113 TIGR00715 precor6x_red precorr 87.9 5.6 0.00012 34.4 9.5 38 110-147 56-99 (256)
114 cd03804 GT1_wbaZ_like This fam 87.6 21 0.00046 32.3 17.2 65 289-368 197-264 (351)
115 cd03807 GT1_WbnK_like This fam 87.2 9.6 0.00021 34.1 11.4 31 15-45 9-39 (365)
116 COG1703 ArgK Putative periplas 86.7 4.4 9.5E-05 35.5 7.9 42 6-47 50-91 (323)
117 TIGR00236 wecB UDP-N-acetylglu 86.6 5.8 0.00013 36.4 9.6 111 9-146 2-116 (365)
118 PRK05647 purN phosphoribosylgl 86.2 8.1 0.00018 32.1 9.2 107 7-148 1-110 (200)
119 PF02441 Flavoprotein: Flavopr 85.8 1.3 2.8E-05 33.8 4.1 44 8-52 1-44 (129)
120 cd04951 GT1_WbdM_like This fam 85.5 0.91 2E-05 41.2 3.7 36 9-44 1-38 (360)
121 PRK08305 spoVFB dipicolinate s 85.3 1.6 3.5E-05 35.9 4.6 42 5-46 3-44 (196)
122 cd02067 B12-binding B12 bindin 84.9 1.5 3.2E-05 32.9 4.0 37 9-45 1-37 (119)
123 PRK10422 lipopolysaccharide co 84.3 7.5 0.00016 35.5 9.1 47 6-52 4-52 (352)
124 PRK10916 ADP-heptose:LPS hepto 84.2 8.6 0.00019 35.1 9.4 103 9-145 2-106 (348)
125 PF00551 Formyl_trans_N: Formy 84.1 13 0.00028 30.3 9.5 107 8-149 1-110 (181)
126 PRK13932 stationary phase surv 83.8 28 0.00061 30.1 12.1 42 7-50 5-46 (257)
127 PF02571 CbiJ: Precorrin-6x re 83.3 4.4 9.6E-05 34.9 6.6 39 110-148 57-101 (249)
128 COG0801 FolK 7,8-dihydro-6-hyd 82.2 2.9 6.3E-05 33.0 4.6 36 288-323 3-38 (160)
129 COG0763 LpxB Lipid A disacchar 81.6 43 0.00092 30.7 16.4 36 7-43 1-36 (381)
130 TIGR02193 heptsyl_trn_I lipopo 81.2 4.7 0.0001 36.2 6.4 44 9-52 1-46 (319)
131 PF09314 DUF1972: Domain of un 80.4 30 0.00066 28.2 12.1 42 22-70 21-62 (185)
132 TIGR02149 glgA_Coryne glycogen 80.3 17 0.00037 33.4 10.1 35 9-44 2-41 (388)
133 PRK07313 phosphopantothenoylcy 79.4 2 4.4E-05 35.0 3.1 44 7-51 1-44 (182)
134 PF12146 Hydrolase_4: Putative 79.2 6.1 0.00013 27.1 5.0 35 8-42 16-50 (79)
135 TIGR02195 heptsyl_trn_II lipop 78.4 16 0.00034 33.1 8.9 102 9-145 1-105 (334)
136 PLN02949 transferase, transfer 78.3 64 0.0014 30.8 26.1 42 5-46 31-77 (463)
137 TIGR02201 heptsyl_trn_III lipo 78.3 21 0.00045 32.4 9.8 106 9-146 1-109 (344)
138 PRK00346 surE 5'(3')-nucleotid 78.0 14 0.00029 31.9 7.8 40 9-50 2-41 (250)
139 TIGR03087 stp1 sugar transfera 77.7 2.1 4.6E-05 39.8 3.1 33 13-46 8-41 (397)
140 PF00448 SRP54: SRP54-type pro 77.5 13 0.00029 30.7 7.4 38 11-48 5-42 (196)
141 PRK10964 ADP-heptose:LPS hepto 77.5 16 0.00036 32.8 8.7 43 8-50 1-45 (322)
142 PRK05973 replicative DNA helic 77.4 21 0.00045 30.5 8.7 47 7-53 64-110 (237)
143 COG1066 Sms Predicted ATP-depe 77.1 8.6 0.00019 35.4 6.5 105 7-148 93-218 (456)
144 cd01974 Nitrogenase_MoFe_beta 76.8 37 0.0008 32.1 11.1 36 109-147 367-402 (435)
145 PF02310 B12-binding: B12 bind 76.7 4.9 0.00011 30.0 4.4 37 9-45 2-38 (121)
146 PRK15179 Vi polysaccharide bio 76.5 91 0.002 31.6 24.0 118 9-145 283-428 (694)
147 TIGR02852 spore_dpaB dipicolin 76.3 4 8.7E-05 33.4 3.9 38 9-46 2-39 (187)
148 TIGR03088 stp2 sugar transfera 75.5 34 0.00074 31.2 10.5 102 9-144 3-107 (374)
149 COG2894 MinD Septum formation 75.2 5.5 0.00012 33.3 4.4 39 7-45 1-41 (272)
150 COG2185 Sbm Methylmalonyl-CoA 75.0 5.4 0.00012 30.8 4.1 41 5-45 10-50 (143)
151 TIGR02370 pyl_corrinoid methyl 75.0 9.9 0.00021 31.5 6.1 48 6-53 83-130 (197)
152 PRK01077 cobyrinic acid a,c-di 74.9 51 0.0011 31.4 11.5 39 6-44 2-41 (451)
153 TIGR00087 surE 5'/3'-nucleotid 74.3 22 0.00049 30.5 8.1 29 22-51 14-42 (244)
154 cd02070 corrinoid_protein_B12- 74.1 11 0.00024 31.3 6.1 41 6-46 81-121 (201)
155 PRK12475 thiamine/molybdopteri 74.0 37 0.0008 30.9 9.9 35 6-45 23-58 (338)
156 PRK14099 glycogen synthase; Pr 73.9 5.8 0.00013 38.1 5.0 40 6-45 2-47 (485)
157 TIGR00639 PurN phosphoribosylg 73.6 50 0.0011 27.2 10.4 105 8-147 1-108 (190)
158 PRK13931 stationary phase surv 72.9 30 0.00064 30.1 8.6 28 23-50 15-45 (261)
159 PF04127 DFP: DNA / pantothena 72.9 4.3 9.2E-05 33.2 3.3 30 14-45 24-53 (185)
160 cd03789 GT1_LPS_heptosyltransf 72.7 37 0.0008 29.7 9.6 103 9-146 1-106 (279)
161 PF13844 Glyco_transf_41: Glyc 72.7 8.9 0.00019 36.3 5.7 91 285-383 283-380 (468)
162 PRK14092 2-amino-4-hydroxy-6-h 72.5 9.6 0.00021 30.4 5.1 31 285-315 6-36 (163)
163 COG0003 ArsA Predicted ATPase 71.4 44 0.00094 30.1 9.5 41 7-47 1-42 (322)
164 TIGR02655 circ_KaiC circadian 71.3 20 0.00043 34.4 8.0 46 8-53 264-309 (484)
165 PRK06029 3-octaprenyl-4-hydrox 71.1 4.2 9.1E-05 33.2 2.9 43 7-50 1-44 (185)
166 PRK05920 aromatic acid decarbo 71.0 7.1 0.00015 32.4 4.2 42 7-49 3-44 (204)
167 cd01121 Sms Sms (bacterial rad 70.8 50 0.0011 30.5 10.1 42 9-50 84-125 (372)
168 PF04413 Glycos_transf_N: 3-De 70.6 26 0.00056 28.7 7.5 99 9-147 22-125 (186)
169 PF07355 GRDB: Glycine/sarcosi 70.5 8.8 0.00019 34.4 4.9 44 104-147 65-118 (349)
170 PF06925 MGDG_synth: Monogalac 69.4 17 0.00036 29.2 6.1 41 107-147 77-123 (169)
171 TIGR01501 MthylAspMutase methy 69.2 18 0.0004 27.7 5.8 46 7-52 1-46 (134)
172 PRK12342 hypothetical protein; 69.1 10 0.00022 32.8 4.9 39 111-149 101-145 (254)
173 PF06180 CbiK: Cobalt chelatas 68.9 7.8 0.00017 33.6 4.2 39 286-324 1-42 (262)
174 PRK06067 flagellar accessory p 68.7 17 0.00036 31.0 6.3 41 9-49 27-67 (234)
175 COG2874 FlaH Predicted ATPases 68.6 19 0.00042 30.0 6.1 98 17-131 38-135 (235)
176 PF01210 NAD_Gly3P_dh_N: NAD-d 67.5 5.4 0.00012 31.6 2.8 32 9-45 1-32 (157)
177 PRK11823 DNA repair protein Ra 67.1 56 0.0012 31.1 9.9 45 7-51 80-124 (446)
178 COG1484 DnaC DNA replication p 67.1 6.1 0.00013 34.2 3.3 46 7-52 105-150 (254)
179 COG0132 BioD Dethiobiotin synt 66.9 79 0.0017 26.8 9.9 35 9-43 3-39 (223)
180 smart00851 MGS MGS-like domain 66.7 39 0.00084 23.6 6.9 35 110-144 46-89 (90)
181 cd00550 ArsA_ATPase Oxyanion-t 66.7 39 0.00085 29.2 8.2 36 11-46 4-39 (254)
182 cd01124 KaiC KaiC is a circadi 66.6 26 0.00056 28.3 6.8 43 10-52 2-44 (187)
183 COG2910 Putative NADH-flavin r 65.9 6.1 0.00013 32.0 2.7 33 9-45 2-34 (211)
184 PRK13789 phosphoribosylamine-- 65.7 22 0.00047 33.5 6.9 35 6-45 3-37 (426)
185 PRK10867 signal recognition pa 65.6 49 0.0011 31.2 9.0 41 9-49 102-143 (433)
186 TIGR00421 ubiX_pad polyprenyl 65.4 8.3 0.00018 31.4 3.5 41 9-50 1-41 (181)
187 PRK03359 putative electron tra 65.1 14 0.00031 31.9 5.0 39 111-149 104-148 (256)
188 cd02071 MM_CoA_mut_B12_BD meth 65.1 21 0.00045 26.8 5.5 38 9-46 1-38 (122)
189 COG0541 Ffh Signal recognition 65.0 60 0.0013 30.4 9.1 46 8-53 101-146 (451)
190 cd02069 methionine_synthase_B1 64.9 22 0.00048 29.8 6.1 47 6-52 87-133 (213)
191 cd01424 MGS_CPS_II Methylglyox 64.4 44 0.00095 24.4 7.0 84 19-145 10-100 (110)
192 PRK15427 colanic acid biosynth 64.3 1.3E+02 0.0027 28.2 20.8 36 9-45 2-39 (406)
193 COG0223 Fmt Methionyl-tRNA for 63.7 20 0.00042 31.9 5.7 35 7-46 1-35 (307)
194 PRK14098 glycogen synthase; Pr 63.2 14 0.00031 35.5 5.2 40 6-45 4-49 (489)
195 TIGR02113 coaC_strep phosphopa 62.7 7.6 0.00016 31.5 2.8 41 9-50 2-42 (177)
196 TIGR00347 bioD dethiobiotin sy 62.2 49 0.0011 26.2 7.5 27 15-41 6-32 (166)
197 cd00532 MGS-like MGS-like doma 61.7 60 0.0013 23.9 7.3 83 21-145 11-104 (112)
198 PRK06988 putative formyltransf 61.7 1E+02 0.0022 27.7 10.1 34 7-45 2-35 (312)
199 TIGR01917 gly_red_sel_B glycin 61.6 16 0.00034 33.8 4.8 44 104-147 61-114 (431)
200 COG1036 Archaeal flavoproteins 61.5 12 0.00025 29.5 3.4 45 5-50 6-53 (187)
201 TIGR01918 various_sel_PB selen 61.5 16 0.00034 33.8 4.8 44 104-147 61-114 (431)
202 PF02585 PIG-L: GlcNAc-PI de-N 61.2 60 0.0013 24.3 7.5 22 22-43 12-33 (128)
203 PLN02316 synthase/transferase 61.0 16 0.00035 38.3 5.4 41 6-46 586-632 (1036)
204 cd03412 CbiK_N Anaerobic cobal 60.7 15 0.00033 27.9 4.0 39 286-324 1-41 (127)
205 PRK12825 fabG 3-ketoacyl-(acyl 60.6 20 0.00044 30.3 5.4 36 6-45 5-40 (249)
206 TIGR03878 thermo_KaiC_2 KaiC d 59.7 98 0.0021 26.9 9.4 39 9-47 38-76 (259)
207 TIGR02195 heptsyl_trn_II lipop 59.5 1.2E+02 0.0026 27.3 10.5 101 7-149 174-279 (334)
208 PRK07206 hypothetical protein; 59.3 50 0.0011 30.9 8.2 33 8-45 3-35 (416)
209 TIGR00682 lpxK tetraacyldisacc 59.2 52 0.0011 29.5 7.7 35 10-44 33-67 (311)
210 COG0859 RfaF ADP-heptose:LPS h 59.1 50 0.0011 29.9 7.8 105 7-145 1-107 (334)
211 PF08323 Glyco_transf_5: Starc 59.0 8.9 0.00019 33.0 2.8 26 20-45 18-43 (245)
212 COG1663 LpxK Tetraacyldisaccha 59.0 51 0.0011 29.7 7.4 34 10-43 52-85 (336)
213 PRK09219 xanthine phosphoribos 58.8 31 0.00068 28.3 5.8 41 108-148 39-81 (189)
214 cd01968 Nitrogenase_NifE_I Nit 58.7 1E+02 0.0022 28.9 9.9 34 110-146 347-380 (410)
215 PRK00784 cobyric acid synthase 58.5 99 0.0021 29.8 10.0 36 8-43 3-39 (488)
216 TIGR00416 sms DNA repair prote 58.4 87 0.0019 29.8 9.4 44 7-50 94-137 (454)
217 PF03308 ArgK: ArgK protein; 58.0 32 0.00069 29.7 5.8 41 6-46 28-68 (266)
218 PRK09739 hypothetical protein; 57.9 27 0.00059 28.8 5.4 37 6-42 2-41 (199)
219 PRK09620 hypothetical protein; 57.7 19 0.00042 30.6 4.6 29 14-44 24-52 (229)
220 PLN02939 transferase, transfer 57.2 23 0.0005 36.8 5.6 42 5-46 479-526 (977)
221 TIGR00460 fmt methionyl-tRNA f 57.0 36 0.00078 30.5 6.4 32 8-44 1-32 (313)
222 PF04244 DPRP: Deoxyribodipyri 56.6 13 0.00028 31.5 3.3 26 20-45 47-72 (224)
223 KOG0780 Signal recognition par 56.5 72 0.0016 29.4 7.9 45 5-49 98-143 (483)
224 TIGR00959 ffh signal recogniti 56.2 90 0.002 29.5 9.0 41 9-49 101-142 (428)
225 PF13460 NAD_binding_10: NADH( 55.9 14 0.00031 29.7 3.5 29 15-45 4-32 (183)
226 cd01965 Nitrogenase_MoFe_beta_ 55.8 21 0.00045 33.7 4.9 36 109-147 361-396 (428)
227 PLN02293 adenine phosphoribosy 55.2 43 0.00094 27.4 6.0 40 107-146 50-91 (187)
228 TIGR02699 archaeo_AfpA archaeo 55.1 18 0.00039 29.2 3.8 40 9-49 1-42 (174)
229 PRK13982 bifunctional SbtC-lik 54.7 15 0.00033 34.9 3.7 40 6-45 255-306 (475)
230 TIGR01498 folK 2-amino-4-hydro 54.5 13 0.00029 28.2 2.7 29 289-317 1-29 (127)
231 PRK05579 bifunctional phosphop 54.4 22 0.00047 33.2 4.6 46 5-51 4-49 (399)
232 cd01840 SGNH_hydrolase_yrhL_li 54.2 26 0.00056 27.3 4.5 39 285-324 50-88 (150)
233 PRK04328 hypothetical protein; 54.0 1.4E+02 0.0031 25.6 10.7 46 7-52 23-68 (249)
234 TIGR02700 flavo_MJ0208 archaeo 53.6 16 0.00035 31.1 3.5 42 9-50 1-44 (234)
235 PRK03094 hypothetical protein; 53.6 13 0.00028 25.5 2.2 21 24-44 10-30 (80)
236 TIGR03880 KaiC_arch_3 KaiC dom 53.5 82 0.0018 26.4 7.8 47 7-53 16-62 (224)
237 PF03403 PAF-AH_p_II: Platelet 53.1 13 0.00029 34.3 3.0 41 6-46 98-138 (379)
238 PRK05632 phosphate acetyltrans 52.7 2E+02 0.0044 29.2 11.4 35 9-43 4-39 (684)
239 cd03466 Nitrogenase_NifN_2 Nit 52.5 25 0.00054 33.2 4.9 36 109-147 362-397 (429)
240 COG0503 Apt Adenine/guanine ph 52.2 47 0.001 27.0 5.8 38 110-147 44-83 (179)
241 COG2120 Uncharacterized protei 52.1 27 0.00059 29.8 4.6 39 4-43 7-46 (237)
242 TIGR01285 nifN nitrogenase mol 51.9 27 0.00057 33.0 4.9 36 109-147 363-398 (432)
243 PLN00016 RNA-binding protein; 51.8 19 0.00041 33.3 3.9 36 7-44 52-89 (378)
244 PRK06732 phosphopantothenate-- 51.6 22 0.00047 30.3 3.9 32 10-43 17-48 (229)
245 cd01981 Pchlide_reductase_B Pc 51.6 25 0.00053 33.2 4.7 37 109-148 360-396 (430)
246 TIGR00521 coaBC_dfp phosphopan 51.4 16 0.00034 33.9 3.3 45 6-51 2-46 (390)
247 PRK05595 replicative DNA helic 51.3 1.9E+02 0.0041 27.5 10.6 41 9-49 203-244 (444)
248 PRK02910 light-independent pro 51.2 26 0.00055 34.1 4.8 36 109-147 352-387 (519)
249 TIGR01744 XPRTase xanthine pho 51.1 49 0.0011 27.2 5.8 41 108-148 39-81 (191)
250 TIGR00665 DnaB replicative DNA 51.0 1.4E+02 0.003 28.2 9.7 42 9-50 197-239 (434)
251 PRK06321 replicative DNA helic 51.0 2.2E+02 0.0048 27.3 10.9 41 9-49 228-269 (472)
252 PRK13982 bifunctional SbtC-lik 50.7 21 0.00046 33.9 4.0 45 6-51 69-113 (475)
253 PRK07688 thiamine/molybdopteri 50.3 1.9E+02 0.0041 26.3 9.9 35 6-45 23-58 (339)
254 cd00561 CobA_CobO_BtuR ATP:cor 50.3 1.3E+02 0.0028 23.9 11.0 34 9-42 4-37 (159)
255 TIGR01278 DPOR_BchB light-inde 49.9 24 0.00052 34.2 4.4 37 109-148 354-390 (511)
256 PF02702 KdpD: Osmosensitive K 49.9 35 0.00075 28.3 4.5 39 7-45 5-43 (211)
257 PF01075 Glyco_transf_9: Glyco 49.6 1.1E+02 0.0023 26.1 8.1 101 6-150 104-212 (247)
258 PRK13604 luxD acyl transferase 49.5 41 0.00089 30.0 5.4 36 7-42 36-71 (307)
259 CHL00076 chlB photochlorophyll 49.3 29 0.00063 33.6 4.8 36 109-147 364-399 (513)
260 PRK05986 cob(I)alamin adenolsy 49.2 1.5E+02 0.0032 24.4 10.5 104 6-130 21-126 (191)
261 TIGR01286 nifK nitrogenase mol 49.1 26 0.00056 33.9 4.4 33 112-147 430-462 (515)
262 PF13450 NAD_binding_8: NAD(P) 48.9 23 0.0005 23.4 2.9 21 25-45 9-29 (68)
263 PF14626 RNase_Zc3h12a_2: Zc3h 48.7 19 0.00041 26.7 2.6 30 21-50 9-38 (122)
264 COG0467 RAD55 RecA-superfamily 48.2 41 0.00088 29.1 5.2 47 7-53 23-69 (260)
265 COG0299 PurN Folate-dependent 48.1 1.6E+02 0.0034 24.3 9.7 102 8-145 1-106 (200)
266 PRK13234 nifH nitrogenase redu 48.0 42 0.0009 29.8 5.3 40 6-45 3-42 (295)
267 TIGR03877 thermo_KaiC_1 KaiC d 47.8 1.2E+02 0.0027 25.7 8.1 46 7-52 21-66 (237)
268 cd02065 B12-binding_like B12 b 47.6 34 0.00075 25.4 4.2 37 10-46 2-38 (125)
269 PF03698 UPF0180: Uncharacteri 47.3 18 0.00038 24.9 2.2 22 24-45 10-31 (80)
270 PRK06849 hypothetical protein; 47.2 43 0.00094 31.0 5.6 36 6-45 3-38 (389)
271 PRK14569 D-alanyl-alanine synt 47.1 45 0.00098 29.6 5.4 38 6-43 2-43 (296)
272 COG1348 NifH Nitrogenase subun 47.0 53 0.0012 27.9 5.2 46 7-52 1-46 (278)
273 PHA02542 41 41 helicase; Provi 46.9 2.7E+02 0.0059 26.7 11.5 42 9-50 192-233 (473)
274 PRK10239 2-amino-4-hydroxy-6-h 46.8 36 0.00078 27.0 4.2 27 288-314 3-29 (159)
275 PRK08760 replicative DNA helic 46.7 1.8E+02 0.0039 28.0 9.6 42 7-48 229-271 (476)
276 COG4088 Predicted nucleotide k 46.5 29 0.00063 28.9 3.6 37 8-44 2-38 (261)
277 PRK06249 2-dehydropantoate 2-r 45.6 31 0.00067 30.9 4.2 34 7-45 5-38 (313)
278 PRK10916 ADP-heptose:LPS hepto 45.6 89 0.0019 28.4 7.3 35 110-148 254-288 (348)
279 PF12695 Abhydrolase_5: Alpha/ 45.2 51 0.0011 24.9 5.0 34 10-43 1-34 (145)
280 TIGR01743 purR_Bsub pur operon 45.1 63 0.0014 28.2 5.8 36 113-148 122-159 (268)
281 PF09001 DUF1890: Domain of un 45.1 27 0.00059 26.7 3.0 30 17-46 9-38 (139)
282 PRK09165 replicative DNA helic 45.0 2.1E+02 0.0046 27.7 9.9 44 7-50 217-275 (497)
283 cd01976 Nitrogenase_MoFe_alpha 44.9 27 0.00059 32.8 3.8 36 109-147 359-394 (421)
284 COG2099 CobK Precorrin-6x redu 44.8 35 0.00075 29.3 4.0 41 108-148 55-101 (257)
285 cd02034 CooC The accessory pro 44.7 62 0.0013 24.1 5.0 37 9-45 1-37 (116)
286 PRK01372 ddl D-alanine--D-alan 44.5 41 0.00089 29.8 4.8 39 7-45 4-46 (304)
287 PRK07773 replicative DNA helic 44.5 1.6E+02 0.0035 30.9 9.5 42 9-50 219-261 (886)
288 PRK09302 circadian clock prote 44.2 76 0.0017 30.7 6.9 46 7-52 273-318 (509)
289 PLN02695 GDP-D-mannose-3',5'-e 44.1 41 0.00089 31.0 4.8 34 6-43 20-53 (370)
290 PRK06027 purU formyltetrahydro 43.9 2.1E+02 0.0045 25.4 8.9 103 5-145 87-192 (286)
291 PRK00005 fmt methionyl-tRNA fo 43.8 1E+02 0.0022 27.6 7.2 41 110-150 69-110 (309)
292 TIGR01007 eps_fam capsular exo 43.1 51 0.0011 27.2 4.9 39 8-46 17-57 (204)
293 TIGR03600 phage_DnaB phage rep 43.1 2.5E+02 0.0054 26.4 10.0 42 9-50 196-238 (421)
294 PF08844 DUF1815: Domain of un 42.9 47 0.001 23.4 3.6 25 21-45 16-40 (105)
295 TIGR02015 BchY chlorophyllide 42.8 35 0.00076 32.1 4.2 32 113-147 349-380 (422)
296 TIGR00345 arsA arsenite-activa 42.6 1.1E+02 0.0023 27.0 7.0 23 25-47 3-25 (284)
297 cd02040 NifH NifH gene encodes 42.5 49 0.0011 28.7 4.9 40 7-46 1-40 (270)
298 PRK12828 short chain dehydroge 42.4 55 0.0012 27.4 5.1 34 6-43 6-39 (239)
299 COG2085 Predicted dinucleotide 42.3 48 0.001 27.7 4.3 28 17-46 8-35 (211)
300 PF05728 UPF0227: Uncharacteri 41.9 65 0.0014 26.4 5.2 41 109-149 47-90 (187)
301 COG0163 UbiX 3-polyprenyl-4-hy 41.9 60 0.0013 26.4 4.6 39 7-46 2-40 (191)
302 PF00070 Pyr_redox: Pyridine n 41.7 40 0.00086 22.8 3.4 23 24-46 11-33 (80)
303 COG1435 Tdk Thymidine kinase [ 41.7 2E+02 0.0044 23.8 9.3 40 7-46 3-43 (201)
304 PRK09213 pur operon repressor; 41.6 77 0.0017 27.8 5.7 36 113-148 124-161 (271)
305 PRK06835 DNA replication prote 41.3 26 0.00057 31.7 3.0 42 7-48 183-224 (329)
306 PRK08558 adenine phosphoribosy 41.2 75 0.0016 27.2 5.6 37 110-146 102-140 (238)
307 PLN02240 UDP-glucose 4-epimera 41.1 46 0.001 30.1 4.7 32 7-42 5-36 (352)
308 cd01715 ETF_alpha The electron 40.9 81 0.0018 25.1 5.6 42 108-149 72-116 (168)
309 PF01288 HPPK: 7,8-dihydro-6-h 40.8 41 0.0009 25.5 3.6 25 290-314 1-25 (127)
310 PRK05636 replicative DNA helic 40.7 1.5E+02 0.0032 28.8 8.1 42 7-48 265-307 (505)
311 COG0162 TyrS Tyrosyl-tRNA synt 40.6 31 0.00068 32.0 3.4 36 7-43 34-72 (401)
312 cd01141 TroA_d Periplasmic bin 40.6 49 0.0011 26.7 4.4 35 113-147 63-99 (186)
313 KOG0541 Alkyl hydroperoxide re 40.4 32 0.00069 27.0 2.8 32 14-45 57-88 (171)
314 COG0859 RfaF ADP-heptose:LPS h 40.2 1.3E+02 0.0027 27.3 7.3 99 8-149 176-279 (334)
315 PRK08462 biotin carboxylase; V 40.1 2.3E+02 0.0049 26.9 9.3 37 5-46 2-38 (445)
316 COG0240 GpsA Glycerol-3-phosph 40.1 44 0.00095 30.0 4.1 34 7-45 1-34 (329)
317 PF07991 IlvN: Acetohydroxy ac 40.0 32 0.00069 27.4 2.9 36 6-46 3-38 (165)
318 COG0052 RpsB Ribosomal protein 39.8 2.5E+02 0.0053 24.2 10.4 31 119-149 156-188 (252)
319 KOG3062 RNA polymerase II elon 39.7 68 0.0015 27.2 4.8 37 7-43 1-38 (281)
320 cd01980 Chlide_reductase_Y Chl 39.7 50 0.0011 31.0 4.7 32 113-147 344-375 (416)
321 PF01695 IstB_IS21: IstB-like 39.5 69 0.0015 25.9 5.0 41 6-46 46-86 (178)
322 PF01012 ETF: Electron transfe 39.4 43 0.00092 26.6 3.7 109 10-148 2-122 (164)
323 PRK08125 bifunctional UDP-gluc 39.2 2E+02 0.0042 29.1 9.1 40 110-149 66-106 (660)
324 COG3914 Spy Predicted O-linked 39.0 1E+02 0.0022 30.1 6.4 70 284-361 427-501 (620)
325 COG2086 FixA Electron transfer 38.9 64 0.0014 28.0 4.8 41 108-148 100-146 (260)
326 COG1797 CobB Cobyrinic acid a, 38.9 79 0.0017 29.6 5.6 30 10-39 3-33 (451)
327 TIGR01380 glut_syn glutathione 38.7 49 0.0011 29.6 4.4 39 9-47 2-43 (312)
328 cd01983 Fer4_NifH The Fer4_Nif 38.7 80 0.0017 21.6 4.8 33 10-42 2-34 (99)
329 PF03446 NAD_binding_2: NAD bi 38.6 42 0.00092 26.6 3.6 31 7-42 1-31 (163)
330 KOG2825 Putative arsenite-tran 38.5 1.5E+02 0.0032 25.7 6.7 34 16-49 28-61 (323)
331 cd02072 Glm_B12_BD B12 binding 38.3 1E+02 0.0022 23.5 5.3 40 9-48 1-40 (128)
332 PRK02304 adenine phosphoribosy 38.0 1E+02 0.0022 24.8 5.7 37 110-146 42-80 (175)
333 PRK08939 primosomal protein Dn 37.8 34 0.00075 30.6 3.2 41 7-47 156-196 (306)
334 PRK12724 flagellar biosynthesi 37.7 3.4E+02 0.0073 25.7 9.5 39 10-48 226-265 (432)
335 PRK03767 NAD(P)H:quinone oxido 37.7 66 0.0014 26.6 4.7 37 8-44 2-40 (200)
336 PRK07454 short chain dehydroge 37.6 78 0.0017 26.7 5.3 32 9-43 7-38 (241)
337 TIGR00064 ftsY signal recognit 37.1 1E+02 0.0022 27.1 5.9 40 8-47 73-112 (272)
338 PF00289 CPSase_L_chain: Carba 36.9 1.3E+02 0.0028 22.2 5.6 66 302-382 12-87 (110)
339 PRK06719 precorrin-2 dehydroge 36.8 60 0.0013 25.7 4.1 33 6-43 12-44 (157)
340 COG0300 DltE Short-chain dehyd 36.7 36 0.00078 29.6 3.0 32 9-43 7-38 (265)
341 COG0771 MurD UDP-N-acetylmuram 36.7 60 0.0013 30.7 4.6 36 7-47 7-42 (448)
342 cd00861 ProRS_anticodon_short 36.7 1.4E+02 0.0031 20.6 6.6 44 9-52 3-49 (94)
343 PF07015 VirC1: VirC1 protein; 36.6 1.1E+02 0.0024 26.1 5.7 41 9-49 3-44 (231)
344 TIGR01862 N2-ase-Ialpha nitrog 36.6 41 0.00088 31.9 3.6 34 110-146 378-411 (443)
345 PF06564 YhjQ: YhjQ protein; 36.5 77 0.0017 27.2 4.9 38 7-44 1-39 (243)
346 TIGR00640 acid_CoA_mut_C methy 36.3 56 0.0012 25.0 3.7 38 6-43 52-90 (132)
347 PRK05748 replicative DNA helic 36.2 3.8E+02 0.0083 25.4 10.4 44 7-50 203-247 (448)
348 PRK10422 lipopolysaccharide co 36.2 1.8E+02 0.0039 26.5 7.7 35 110-148 255-289 (352)
349 cd03789 GT1_LPS_heptosyltransf 36.1 2.1E+02 0.0046 24.9 7.9 100 9-149 123-226 (279)
350 PLN02496 probable phosphopanto 36.1 43 0.00093 27.9 3.2 44 6-51 18-61 (209)
351 PRK10427 putative PTS system f 36.0 89 0.0019 23.2 4.6 39 8-46 3-44 (114)
352 COG2210 Peroxiredoxin family p 36.0 95 0.002 23.9 4.7 32 12-43 8-39 (137)
353 cd01985 ETF The electron trans 36.0 78 0.0017 25.6 4.8 41 108-148 80-123 (181)
354 TIGR00236 wecB UDP-N-acetylglu 35.8 82 0.0018 28.7 5.5 84 286-383 197-289 (365)
355 TIGR01917 gly_red_sel_B glycin 35.8 2.4E+02 0.0052 26.4 8.1 49 105-153 322-377 (431)
356 cd00483 HPPK 7,8-dihydro-6-hyd 35.7 42 0.0009 25.5 2.9 26 289-314 1-26 (128)
357 PRK11780 isoprenoid biosynthes 35.7 96 0.0021 26.1 5.3 38 8-45 2-43 (217)
358 PLN02285 methionyl-tRNA formyl 35.6 2.8E+02 0.0061 25.2 8.6 40 110-149 84-124 (334)
359 CHL00072 chlL photochlorophyll 35.6 75 0.0016 28.1 5.0 39 9-47 2-40 (290)
360 PRK00652 lpxK tetraacyldisacch 35.6 67 0.0015 29.0 4.6 37 9-45 51-89 (325)
361 TIGR00853 pts-lac PTS system, 35.6 1.2E+02 0.0027 21.5 5.2 39 6-44 2-40 (95)
362 PRK00039 ruvC Holliday junctio 35.5 1.1E+02 0.0023 24.5 5.3 45 105-149 47-106 (164)
363 PRK13810 orotate phosphoribosy 35.4 1.2E+02 0.0026 24.9 5.7 37 111-147 65-103 (187)
364 TIGR01284 alt_nitrog_alph nitr 35.3 38 0.00082 32.3 3.2 34 110-146 386-419 (457)
365 COG3349 Uncharacterized conser 35.3 44 0.00095 31.9 3.5 33 9-46 2-34 (485)
366 cd02032 Bchl_like This family 35.1 72 0.0016 27.7 4.8 38 9-46 2-39 (267)
367 TIGR00640 acid_CoA_mut_C methy 35.0 1.5E+02 0.0033 22.6 5.9 40 7-46 2-41 (132)
368 TIGR00745 apbA_panE 2-dehydrop 34.8 23 0.00049 31.2 1.6 19 26-44 5-23 (293)
369 PRK06522 2-dehydropantoate 2-r 34.6 52 0.0011 29.1 3.9 30 9-43 2-31 (304)
370 TIGR00725 conserved hypothetic 34.5 68 0.0015 25.5 4.1 34 7-40 1-36 (159)
371 PF05818 TraT: Enterobacterial 34.5 75 0.0016 26.6 4.3 41 279-319 13-54 (215)
372 PF02016 Peptidase_S66: LD-car 34.1 26 0.00057 30.9 1.8 32 296-327 43-74 (284)
373 TIGR01281 DPOR_bchL light-inde 34.1 78 0.0017 27.5 4.8 38 9-46 2-39 (268)
374 PF05762 VWA_CoxE: VWA domain 34.0 1E+02 0.0022 26.0 5.3 39 7-45 150-189 (222)
375 TIGR01918 various_sel_PB selen 33.9 1.3E+02 0.0028 28.2 6.0 48 105-152 322-376 (431)
376 cd01971 Nitrogenase_VnfN_like 33.8 74 0.0016 30.0 4.9 35 110-147 358-396 (427)
377 TIGR01860 VNFD nitrogenase van 33.7 51 0.0011 31.5 3.8 29 113-144 391-419 (461)
378 PRK13394 3-hydroxybutyrate deh 33.6 99 0.0022 26.4 5.4 33 9-44 8-40 (262)
379 PLN02572 UDP-sulfoquinovose sy 33.5 78 0.0017 30.0 5.0 33 6-42 46-78 (442)
380 PF01380 SIS: SIS domain SIS d 33.5 80 0.0017 23.5 4.3 32 17-48 62-93 (131)
381 COG1763 MobB Molybdopterin-gua 33.3 83 0.0018 25.1 4.3 37 8-44 2-39 (161)
382 PF00534 Glycos_transf_1: Glyc 33.2 84 0.0018 24.7 4.6 79 285-374 13-99 (172)
383 cd01714 ETF_beta The electron 33.2 88 0.0019 26.0 4.7 40 108-147 97-142 (202)
384 COG0059 IlvC Ketol-acid reduct 33.0 64 0.0014 28.6 3.8 38 6-48 17-54 (338)
385 cd01075 NAD_bind_Leu_Phe_Val_D 33.0 83 0.0018 26.1 4.5 32 5-41 26-57 (200)
386 cd01977 Nitrogenase_VFe_alpha 33.0 44 0.00095 31.4 3.2 32 112-146 351-382 (415)
387 PRK13230 nitrogenase reductase 32.9 90 0.0019 27.3 5.0 39 7-45 1-39 (279)
388 PRK12560 adenine phosphoribosy 32.8 1.3E+02 0.0029 24.5 5.6 35 111-146 44-80 (187)
389 PRK07533 enoyl-(acyl carrier p 32.7 94 0.002 26.7 5.1 41 1-43 2-44 (258)
390 PF02606 LpxK: Tetraacyldisacc 32.6 58 0.0013 29.4 3.8 36 10-45 40-75 (326)
391 cd03416 CbiX_SirB_N Sirohydroc 32.6 1.6E+02 0.0036 20.8 5.6 36 287-322 1-38 (101)
392 COG0451 WcaG Nucleoside-diphos 32.6 56 0.0012 28.9 3.8 31 13-45 4-34 (314)
393 PRK07060 short chain dehydroge 32.3 75 0.0016 26.8 4.4 39 1-43 1-41 (245)
394 TIGR03172 probable selenium-de 32.1 59 0.0013 27.7 3.5 32 15-46 5-36 (232)
395 PRK08229 2-dehydropantoate 2-r 32.0 50 0.0011 29.9 3.4 32 8-44 3-34 (341)
396 PF03720 UDPG_MGDP_dh_C: UDP-g 32.0 60 0.0013 23.6 3.2 24 22-45 17-40 (106)
397 TIGR00708 cobA cob(I)alamin ad 31.9 2.8E+02 0.006 22.5 9.4 35 8-42 6-40 (173)
398 PRK07231 fabG 3-ketoacyl-(acyl 31.9 1.1E+02 0.0023 25.9 5.3 27 16-44 12-38 (251)
399 TIGR03649 ergot_EASG ergot alk 31.8 52 0.0011 28.8 3.4 29 15-45 5-33 (285)
400 PF02374 ArsA_ATPase: Anion-tr 31.7 72 0.0016 28.5 4.2 39 9-47 2-41 (305)
401 PRK12829 short chain dehydroge 31.7 85 0.0018 26.8 4.7 34 6-43 10-43 (264)
402 cd04946 GT1_AmsK_like This fam 31.7 2.1E+02 0.0047 26.6 7.6 82 286-375 229-318 (407)
403 PF02780 Transketolase_C: Tran 31.7 87 0.0019 23.4 4.2 36 6-43 8-43 (124)
404 PHA02857 monoglyceride lipase; 31.5 79 0.0017 27.3 4.5 37 7-43 24-60 (276)
405 PF03721 UDPG_MGDP_dh_N: UDP-g 31.4 85 0.0018 25.6 4.3 31 9-44 2-32 (185)
406 PLN02650 dihydroflavonol-4-red 31.4 67 0.0014 29.2 4.1 29 13-43 9-37 (351)
407 PLN02778 3,5-epimerase/4-reduc 31.3 75 0.0016 28.2 4.3 30 8-41 10-39 (298)
408 PRK07666 fabG 3-ketoacyl-(acyl 31.3 1E+02 0.0023 25.9 5.1 32 10-44 9-40 (239)
409 PRK14619 NAD(P)H-dependent gly 31.2 73 0.0016 28.5 4.2 35 6-45 3-37 (308)
410 PF01738 DLH: Dienelactone hyd 31.1 99 0.0021 25.7 4.8 34 7-40 13-46 (218)
411 PRK14494 putative molybdopteri 31.0 1.1E+02 0.0023 26.1 4.9 34 10-43 4-37 (229)
412 PRK08506 replicative DNA helic 30.9 4.9E+02 0.011 25.0 12.1 43 7-49 192-234 (472)
413 PRK14478 nitrogenase molybdenu 30.9 61 0.0013 31.1 3.8 34 109-145 383-416 (475)
414 PRK13011 formyltetrahydrofolat 30.7 3.3E+02 0.0072 24.1 8.1 105 5-147 87-194 (286)
415 PRK04148 hypothetical protein; 30.7 53 0.0011 25.2 2.7 34 6-45 16-49 (134)
416 PLN02657 3,8-divinyl protochlo 30.7 1E+02 0.0023 28.6 5.3 34 6-43 59-92 (390)
417 COG1090 Predicted nucleoside-d 30.6 53 0.0011 28.7 2.9 21 25-45 12-32 (297)
418 PF06745 KaiC: KaiC; InterPro 30.6 1.3E+02 0.0029 25.2 5.6 46 8-53 20-66 (226)
419 PRK09590 celB cellobiose phosp 30.6 1.4E+02 0.0031 21.7 4.9 36 8-43 2-37 (104)
420 PRK14573 bifunctional D-alanyl 30.6 62 0.0013 33.5 4.1 35 5-43 2-36 (809)
421 PLN02214 cinnamoyl-CoA reducta 30.5 86 0.0019 28.4 4.6 34 6-43 9-42 (342)
422 PF02558 ApbA: Ketopantoate re 30.3 52 0.0011 25.5 2.8 20 26-45 12-31 (151)
423 PRK01906 tetraacyldisaccharide 30.3 64 0.0014 29.3 3.6 36 10-45 61-96 (338)
424 COG0569 TrkA K+ transport syst 30.3 47 0.001 28.1 2.7 21 25-45 13-33 (225)
425 TIGR01282 nifD nitrogenase mol 30.2 32 0.0007 32.8 1.8 35 109-146 394-428 (466)
426 PRK10490 sensor protein KdpD; 29.9 74 0.0016 33.4 4.5 39 7-45 24-62 (895)
427 PRK11914 diacylglycerol kinase 29.9 1.4E+02 0.003 26.6 5.8 41 5-45 6-49 (306)
428 PRK04940 hypothetical protein; 29.8 1.7E+02 0.0037 23.8 5.6 31 119-149 60-91 (180)
429 cd07025 Peptidase_S66 LD-Carbo 29.8 54 0.0012 28.9 3.1 32 296-327 43-74 (282)
430 PRK06756 flavodoxin; Provision 29.7 1.1E+02 0.0023 23.7 4.5 36 8-43 2-38 (148)
431 TIGR01283 nifE nitrogenase mol 29.7 78 0.0017 30.2 4.3 35 109-146 385-419 (456)
432 TIGR01861 ANFD nitrogenase iro 29.6 61 0.0013 31.4 3.6 30 113-145 392-421 (513)
433 PRK10566 esterase; Provisional 29.5 94 0.002 26.3 4.5 35 9-43 28-62 (249)
434 PRK05784 phosphoribosylamine-- 29.5 2.3E+02 0.0049 27.4 7.3 31 8-43 1-33 (486)
435 PRK14106 murD UDP-N-acetylmura 29.4 1.1E+02 0.0024 29.0 5.3 35 6-45 4-38 (450)
436 PRK12744 short chain dehydroge 29.1 2.5E+02 0.0054 23.9 7.2 32 9-43 9-40 (257)
437 PF13614 AAA_31: AAA domain; P 29.1 1.1E+02 0.0023 23.8 4.5 38 11-48 4-42 (157)
438 PRK13235 nifH nitrogenase redu 29.1 1.1E+02 0.0023 26.7 4.9 39 8-46 2-40 (274)
439 PRK10125 putative glycosyl tra 28.9 91 0.002 29.1 4.6 37 9-45 2-40 (405)
440 PRK05579 bifunctional phosphop 28.8 91 0.002 29.1 4.5 26 17-44 212-237 (399)
441 PRK07308 flavodoxin; Validated 28.7 1.2E+02 0.0026 23.4 4.6 37 7-45 3-40 (146)
442 KOG0081 GTPase Rab27, small G 28.6 1.5E+02 0.0032 23.5 4.8 31 118-148 123-163 (219)
443 KOG4667 Predicted esterase [Li 28.6 92 0.002 26.2 3.9 33 7-39 32-66 (269)
444 PF10093 DUF2331: Uncharacteri 28.6 70 0.0015 29.4 3.5 28 17-44 10-38 (374)
445 PF10237 N6-adenineMlase: Prob 28.6 1.3E+02 0.0027 24.1 4.6 29 24-52 12-43 (162)
446 PRK11064 wecC UDP-N-acetyl-D-m 28.5 75 0.0016 29.9 3.9 32 7-43 3-34 (415)
447 PRK12823 benD 1,6-dihydroxycyc 28.4 1.1E+02 0.0024 26.1 4.9 32 9-43 9-40 (260)
448 CHL00194 ycf39 Ycf39; Provisio 28.3 70 0.0015 28.6 3.6 31 9-43 2-32 (317)
449 cd07062 Peptidase_S66_mccF_lik 28.3 56 0.0012 29.2 2.9 32 296-327 47-78 (308)
450 KOG3847 Phospholipase A2 (plat 28.2 1.3E+02 0.0029 26.9 5.0 41 5-45 115-155 (399)
451 cd02033 BchX Chlorophyllide re 28.2 1.5E+02 0.0032 26.9 5.5 42 6-47 30-71 (329)
452 TIGR01090 apt adenine phosphor 28.2 1.8E+02 0.0038 23.3 5.6 39 107-145 34-74 (169)
453 PRK07576 short chain dehydroge 28.1 89 0.0019 26.9 4.2 26 16-43 16-41 (264)
454 cd01973 Nitrogenase_VFe_beta_l 28.0 1E+02 0.0023 29.3 4.8 34 110-146 370-405 (454)
455 PRK10749 lysophospholipase L2; 28.0 1.1E+02 0.0024 27.5 4.9 35 9-43 55-89 (330)
456 COG1440 CelA Phosphotransferas 28.0 1.6E+02 0.0034 21.3 4.5 38 7-44 1-38 (102)
457 PRK02122 glucosamine-6-phospha 28.0 85 0.0018 31.5 4.3 36 7-42 369-404 (652)
458 TIGR03837 efp_adjacent_2 conse 27.9 81 0.0017 28.8 3.8 28 17-44 10-38 (371)
459 TIGR02114 coaB_strep phosphopa 27.9 58 0.0013 27.6 2.8 31 10-42 16-46 (227)
460 TIGR00234 tyrS tyrosyl-tRNA sy 27.8 60 0.0013 30.0 3.1 34 9-43 34-70 (377)
461 COG3640 CooC CO dehydrogenase 27.8 2.1E+02 0.0046 24.5 5.9 45 8-52 1-46 (255)
462 PRK00094 gpsA NAD(P)H-dependen 27.8 79 0.0017 28.3 3.9 33 7-44 1-33 (325)
463 PRK00170 azoreductase; Reviewe 27.5 1.3E+02 0.0028 24.6 4.9 36 8-43 2-43 (201)
464 PRK12458 glutathione synthetas 27.5 65 0.0014 29.3 3.2 27 21-47 10-36 (338)
465 PRK06079 enoyl-(acyl carrier p 27.5 1.2E+02 0.0026 26.0 4.8 39 1-42 1-40 (252)
466 PF13167 GTP-bdg_N: GTP-bindin 27.5 1.7E+02 0.0037 20.9 4.6 36 109-144 47-84 (95)
467 TIGR01675 plant-AP plant acid 27.5 80 0.0017 26.8 3.5 26 21-46 122-147 (229)
468 PRK08293 3-hydroxybutyryl-CoA 27.3 86 0.0019 27.6 3.9 33 7-44 3-35 (287)
469 PRK09444 pntB pyridine nucleot 27.2 1E+02 0.0022 29.0 4.4 39 7-45 306-347 (462)
470 PRK02006 murD UDP-N-acetylmura 27.2 91 0.002 30.1 4.4 35 5-44 5-39 (498)
471 TIGR02931 anfK_nitrog Fe-only 27.2 1.1E+02 0.0024 29.2 4.9 34 110-146 377-412 (461)
472 CHL00175 minD septum-site dete 27.2 1.3E+02 0.0028 26.4 5.0 40 6-45 13-54 (281)
473 PF05704 Caps_synth: Capsular 27.1 1E+02 0.0022 27.2 4.2 80 286-377 45-126 (276)
474 PRK10499 PTS system N,N'-diace 27.1 1.8E+02 0.0039 21.2 4.9 37 6-42 2-38 (106)
475 PRK13232 nifH nitrogenase redu 27.1 1.2E+02 0.0025 26.5 4.7 37 9-45 3-39 (273)
476 cd01147 HemV-2 Metal binding p 27.0 1.1E+02 0.0024 26.2 4.5 36 113-148 68-106 (262)
477 PF03853 YjeF_N: YjeF-related 27.0 73 0.0016 25.5 3.1 37 6-43 24-60 (169)
478 PRK05557 fabG 3-ketoacyl-(acyl 26.9 1.2E+02 0.0025 25.6 4.6 28 15-44 11-38 (248)
479 PRK06935 2-deoxy-D-gluconate 3 26.9 1.2E+02 0.0027 25.9 4.8 33 9-44 16-48 (258)
480 TIGR01012 Sa_S2_E_A ribosomal 26.9 1.1E+02 0.0023 25.4 4.0 32 118-149 107-140 (196)
481 PRK12921 2-dehydropantoate 2-r 26.9 70 0.0015 28.3 3.3 30 9-43 2-31 (305)
482 COG1111 MPH1 ERCC4-like helica 26.8 1.7E+02 0.0037 28.0 5.7 53 274-326 380-436 (542)
483 PRK09072 short chain dehydroge 26.7 1.5E+02 0.0032 25.4 5.3 26 16-43 12-37 (263)
484 cd01452 VWA_26S_proteasome_sub 26.7 3.6E+02 0.0078 22.1 8.3 39 8-46 108-147 (187)
485 PRK08181 transposase; Validate 26.7 1.3E+02 0.0027 26.4 4.7 39 7-45 106-144 (269)
486 PRK04020 rps2P 30S ribosomal p 26.6 1E+02 0.0022 25.7 3.9 32 118-149 113-146 (204)
487 PRK11889 flhF flagellar biosyn 26.6 1.7E+02 0.0037 27.4 5.6 40 8-47 242-281 (436)
488 PF08357 SEFIR: SEFIR domain; 26.6 93 0.002 24.1 3.7 32 9-40 2-35 (150)
489 PRK12377 putative replication 26.5 66 0.0014 27.8 2.9 40 8-47 102-141 (248)
490 PRK00771 signal recognition pa 26.5 1.7E+02 0.0036 27.8 5.8 40 9-48 97-136 (437)
491 PF03205 MobB: Molybdopterin g 26.5 1.4E+02 0.0031 23.0 4.5 35 9-43 2-36 (140)
492 TIGR01425 SRP54_euk signal rec 26.5 1.3E+02 0.0027 28.5 4.9 40 9-48 102-141 (429)
493 TIGR01279 DPOR_bchN light-inde 26.4 3.4E+02 0.0074 25.4 7.9 35 6-45 273-307 (407)
494 TIGR00176 mobB molybdopterin-g 26.4 1.4E+02 0.0031 23.4 4.7 34 11-44 3-36 (155)
495 COG1255 Uncharacterized protei 26.4 77 0.0017 23.5 2.8 21 24-44 25-45 (129)
496 PRK08703 short chain dehydroge 26.4 1.7E+02 0.0036 24.6 5.5 19 25-43 20-38 (239)
497 PF00072 Response_reg: Respons 26.3 1.6E+02 0.0034 20.9 4.7 42 108-149 32-80 (112)
498 PF13692 Glyco_trans_1_4: Glyc 26.3 1.3E+02 0.0028 22.4 4.4 73 288-373 3-78 (135)
499 COG0452 Dfp Phosphopantothenoy 26.3 1E+02 0.0022 28.8 4.2 45 7-52 4-48 (392)
500 cd00983 recA RecA is a bacter 26.3 1.2E+02 0.0026 27.4 4.6 38 10-47 58-95 (325)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-51 Score=382.35 Aligned_cols=370 Identities=48% Similarity=0.908 Sum_probs=266.2
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
++.||+++|+|++||++||+.||+.|+.||+.||+++++.+...+..........+..++++.+|.+...++++++.+..
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 46799999999999999999999999999999999999887554444321111112248899998775445777665543
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhc--CCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhhh
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALY 163 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~~ 163 (383)
...... ..+..+......+.+.++++|++ .+++|||+|.+..|+..+|+++|||.+.|++++.+....++.....
T Consensus 87 ~~~~~~---~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 87 DTLPSR---DLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred ccCCcH---HHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 322221 34445555666677788888775 4679999999999999999999999999999988777655443322
Q ss_pred CCCCCCCCCCCCcccCCCCCCcccCCCCCCccccccCCChhHHHHHHHHhhhcccccEEEEcchhhcchHHHHHHHHhcC
Q 036871 164 EPHKNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALG 243 (383)
Q Consensus 164 ~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 243 (383)
.+.........+..+|+++....++.++++.+ +.....+..+...+......+.++++||+++||+.+++.++..++
T Consensus 164 ~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~ 240 (491)
T PLN02534 164 NAHLSVSSDSEPFVVPGMPQSIEITRAQLPGA---FVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIK 240 (491)
T ss_pred cccccCCCCCceeecCCCCccccccHHHCChh---hcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcC
Confidence 22222222233456788775444566667764 211112344444444444557789999999999999999877676
Q ss_pred CcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCcEEEEEe
Q 036871 244 RRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEASRRNFIWVVR 323 (383)
Q Consensus 244 ~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~viw~~~ 323 (383)
++++.|||+.............+......+.++.+|||.+++++||||||||+.....+++.+++.+|+.++++|||+++
T Consensus 241 ~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r 320 (491)
T PLN02534 241 KKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIK 320 (491)
T ss_pred CcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 78999999975321110000011111112457999999998789999999999999999999999999999999999998
Q ss_pred cCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 324 RNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 324 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
...... +.....+|++++++..+.|+++.+|+||.+||+|+++++||||||+||++||
T Consensus 321 ~~~~~~--~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea 378 (491)
T PLN02534 321 TGEKHS--ELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEG 378 (491)
T ss_pred cCcccc--chhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHH
Confidence 532110 1111126889998888899999999999999999999999999999999996
No 2
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.2e-50 Score=379.66 Aligned_cols=371 Identities=60% Similarity=1.128 Sum_probs=261.5
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhh--hcCCCcceEeeeCCCccCCCCCCCc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERAN--EMGIELDVKTIKFPSVEAGLPEGCE 83 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~ 83 (383)
++.||+++|+|++||++|++.||+.|+.|||+||+++++.+...+++...... ..+..+.+..++++....+++++.+
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 46799999999999999999999999999999999999988766554422110 0112345666665543335665543
Q ss_pred cccccc---hhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhh
Q 036871 84 NLDAIT---NEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCL 160 (383)
Q Consensus 84 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~ 160 (383)
...... ......+...+......+.+.+++.+++.++||||+|.++.|+..+|+++|||.+.|++++++.....+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 163 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCI 163 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHH
Confidence 322110 00000233344455566788888888888899999999999999999999999999999988776665544
Q ss_pred hhhCCCCCCCCCCCCcccCCCCCCcccCCCCCCccccccCCChhHHHHHHHHhhhcccccEEEEcchhhcchHHHHHHHH
Q 036871 161 ALYEPHKNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRK 240 (383)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (383)
....+....+....+..+|+++..+.++..+++.. - ....+..++........+++++++||+.++|.+..+.++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~ 239 (482)
T PLN03007 164 RVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA---D-EESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKS 239 (482)
T ss_pred HhcccccccCCCCceeeCCCCCCccccCHHhcCCC---C-CchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHh
Confidence 33222222221112234677764332333333321 1 1112445555566667788899999999999888887776
Q ss_pred hcCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCcEEE
Q 036871 241 ALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEASRRNFIW 320 (383)
Q Consensus 241 ~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~viw 320 (383)
.....+++|||+....+.......++...+..+.++.+||+.++++++|||||||+...+.+++.+++.+|+.++++|||
T Consensus 240 ~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw 319 (482)
T PLN03007 240 FVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIW 319 (482)
T ss_pred ccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEE
Confidence 55567999999865422110000011112223578999999987789999999999999999999999999999999999
Q ss_pred EEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 321 VVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 321 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
+++..... ++... .+|++++++..+.|+++.+|+||.+||+|+++++||||||+||++||
T Consensus 320 ~~~~~~~~--~~~~~-~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea 379 (482)
T PLN03007 320 VVRKNENQ--GEKEE-WLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEG 379 (482)
T ss_pred EEecCCcc--cchhh-cCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHH
Confidence 99864321 01111 28999999999999999999999999999999999999999999996
No 3
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-50 Score=373.69 Aligned_cols=360 Identities=34% Similarity=0.645 Sum_probs=261.4
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
+++||+++|+|++||++||+.||+.|+.+|+.||+++++.+...+++.... ..++++..++++.. .+++++.+..
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~----~~~i~~~~lp~P~~-~~lPdG~~~~ 82 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSK----HPSIETLVLPFPSH-PSIPSGVENV 82 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhccc----CCCeeEEeCCCCCc-CCCCCCCcCh
Confidence 578999999999999999999999999999999999999876555443110 12577777776543 4677766544
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhc--CCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhhh
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALY 163 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~~ 163 (383)
..... +....+......+.+.+.+.+++ .+++|||+|.+..|+..+|+++|||.+.|++++++....++++...
T Consensus 83 ~~~~~----~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~ 158 (477)
T PLN02863 83 KDLPP----SGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWRE 158 (477)
T ss_pred hhcch----hhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhc
Confidence 33221 33334555555666667777765 4679999999999999999999999999999999888887776533
Q ss_pred CCCCCC-CCCC---CCcccCCCCCCcccCCCCCCccccccCC---ChhHHHHHHHHhhhcccccEEEEcchhhcchHHHH
Q 036871 164 EPHKNV-SSDS---EPFVMPHFPGEIKLTRNQLPDFVKQDMG---DNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYAD 236 (383)
Q Consensus 164 ~~~~~~-~~~~---~~~~~P~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (383)
.+.... .... ....+|+++. ++.++++.+ ++. .......+.........++++++||+++||+.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 232 (477)
T PLN02863 159 MPTKINPDDQNEILSFSKIPNCPK---YPWWQISSL---YRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLE 232 (477)
T ss_pred ccccccccccccccccCCCCCCCC---cChHhCchh---hhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHH
Confidence 222110 1111 1124677654 566667765 221 11222233333333556788999999999999999
Q ss_pred HHHHhcC-CcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCC
Q 036871 237 HYRKALG-RRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEASR 315 (383)
Q Consensus 237 ~~~~~~~-~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~ 315 (383)
.++..++ ++++.|||+++...........+...+..++++.+||+.+++++||||||||++..+.+++.+++.+|+.++
T Consensus 233 ~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~ 312 (477)
T PLN02863 233 HLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSG 312 (477)
T ss_pred HHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCC
Confidence 9987665 679999999754211000001111112235689999999877899999999999999999999999999999
Q ss_pred CcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 316 RNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 316 ~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
+++||+++.....+ .... .+|++++++..+.|+++.+|+||.+||+|+++++|||||||||++||
T Consensus 313 ~~flw~~~~~~~~~--~~~~-~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea 377 (477)
T PLN02863 313 VHFIWCVKEPVNEE--SDYS-NIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEG 377 (477)
T ss_pred CcEEEEECCCcccc--cchh-hCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHH
Confidence 99999997543210 1111 28899999988999999999999999999999999999999999996
No 4
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.2e-50 Score=371.11 Aligned_cols=342 Identities=25% Similarity=0.440 Sum_probs=248.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
+++||+++|+|+.||++||+.||+.|++|||+||+++++.+...+++.. ....++++..++++.. ++++.+.+..
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~----a~~~~i~~~~l~~p~~-dgLp~g~~~~ 77 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN----LFPDSIVFHPLTIPPV-NGLPAGAETT 77 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc----CCCCceEEEEeCCCCc-cCCCCCcccc
Confidence 4689999999999999999999999999999999999987765554321 0012456666655421 3566554421
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhhhCC
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEP 165 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~~~~ 165 (383)
.... . .....+....+.+.+.+++.+++.++||||+| +..|+..+|+++|||.+.|+++++.... +.+.+
T Consensus 78 ~~l~-~---~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~---- 147 (442)
T PLN02208 78 SDIP-I---SMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVP---- 147 (442)
T ss_pred cchh-H---HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccC----
Confidence 1111 0 23344555667788888998888889999999 6789999999999999999999886543 33221
Q ss_pred CCCCCCCCCCcccCCCCC-CcccCCCCCCccccccCCChhHHHHHHHHhhhcccccEEEEcchhhcchHHHHHHHHhcCC
Q 036871 166 HKNVSSDSEPFVMPHFPG-EIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALGR 244 (383)
Q Consensus 166 ~~~~~~~~~~~~~P~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 244 (383)
....+ ..+|+++. .+.++..+++.+ ......+..+...+.....+++++++||+++||+.+++++++..++
T Consensus 148 ~~~~~-----~~~pglp~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~ 219 (442)
T PLN02208 148 GGKLG-----VPPPGYPSSKVLFRENDAHAL---ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHK 219 (442)
T ss_pred ccccC-----CCCCCCCCcccccCHHHcCcc---cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCC
Confidence 11111 12466654 122344455532 1111123444444545666789999999999999999999887778
Q ss_pred cEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCcEEEEEec
Q 036871 245 RAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEASRRNFIWVVRR 324 (383)
Q Consensus 245 ~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~viw~~~~ 324 (383)
+++.|||++.... ....++.++.+|||.+++++||||||||+..++.+++.+++.+++..+.+++|.+..
T Consensus 220 ~v~~vGpl~~~~~----------~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~ 289 (442)
T PLN02208 220 KVLLTGPMFPEPD----------TSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKP 289 (442)
T ss_pred CEEEEeecccCcC----------CCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 9999999975421 012257899999999877899999999999999999999888776666777777664
Q ss_pred CCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 325 NKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 325 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
.... ++... .+|++|+++....|+++.+|+||.+||+|+++++|||||||||++||
T Consensus 290 ~~~~--~~~~~-~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Ea 345 (442)
T PLN02208 290 PRGS--STVQE-GLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWES 345 (442)
T ss_pred CCcc--cchhh-hCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHH
Confidence 3110 01111 38999999999999999999999999999999999999999999996
No 5
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.3e-49 Score=366.86 Aligned_cols=361 Identities=30% Similarity=0.494 Sum_probs=253.5
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
++.||+++|+|++||++||+.||+.|+.||..||+++++.+...+.+.... ...+++++.+|.+.. ++++++.+..
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~-dglp~~~~~~ 80 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSV-PGLPSSAESS 80 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCcc-CCCCCCcccc
Confidence 457999999999999999999999999999999999998765444321000 012588888887653 3666554432
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhhhCC
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEP 165 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~~~~ 165 (383)
..... .....+......+.+.+++++++.+++|||+|.+..|+..+|+++|||.+.|+++++...+.+++......
T Consensus 81 ~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 81 TDVPY----TKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cccch----hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 21110 11123334555667788888887789999999999999999999999999999998877766543321111
Q ss_pred CCCCCCCCCC-cccCCCCC---CcccCCCCCCccccccCC---Ch-hHHHHHHHHhhhcccccEEEEcchhhcchHHHHH
Q 036871 166 HKNVSSDSEP-FVMPHFPG---EIKLTRNQLPDFVKQDMG---DN-DFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADH 237 (383)
Q Consensus 166 ~~~~~~~~~~-~~~P~~~~---~~~~~~~~l~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (383)
.......... ..+|++.. .+.++.++++.+ +.. .. .+..+. .......+++++++||+++||+.+++.
T Consensus 157 ~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~---~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~ 232 (472)
T PLN02670 157 GGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKY---VEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDL 232 (472)
T ss_pred cccCCCccccccCCCCcCCCCccccccHHHhhHH---HhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHH
Confidence 1111111111 12343311 112344566654 211 11 122233 333345678899999999999999999
Q ss_pred HHHhcCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCc
Q 036871 238 YRKALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEASRRN 317 (383)
Q Consensus 238 ~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~ 317 (383)
++...+.+++.|||+....... ... .........++.+|||.+++++||||||||+..++.+++++++.+|+.++++
T Consensus 233 l~~~~~~~v~~VGPl~~~~~~~-~~~--~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~ 309 (472)
T PLN02670 233 LSDLYRKPIIPIGFLPPVIEDD-EED--DTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETP 309 (472)
T ss_pred HHHhhCCCeEEEecCCcccccc-ccc--cccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCC
Confidence 8776557899999996531100 000 0000011267999999987789999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 318 FIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 318 viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
|||+++..... +.+....+|+++++++...++++.+|+||.+||+|+++++|||||||||++||
T Consensus 310 FlWv~r~~~~~--~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Ea 373 (472)
T PLN02670 310 FFWVLRNEPGT--TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEG 373 (472)
T ss_pred EEEEEcCCccc--ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHH
Confidence 99999853210 02212248999999998899999999999999999999999999999999996
No 6
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.2e-48 Score=356.38 Aligned_cols=341 Identities=27% Similarity=0.462 Sum_probs=247.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
+++||+++|+|++||++||+.||+.|++||++||+++++.+...++.... ...++++..++++.. ++++++.+..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~-dGLP~g~e~~ 77 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPV-DGLPFGAETA 77 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCc-CCCCCccccc
Confidence 36799999999999999999999999999999999999887655543310 011467766765532 3666654322
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhhhCC
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEP 165 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~~~~ 165 (383)
..... .....+......+.+.+++.+++.++||||+|. ..|+..+|+++|||.+.|+++++.....+.+..
T Consensus 78 ~~l~~----~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~---- 148 (446)
T PLN00414 78 SDLPN----STKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR---- 148 (446)
T ss_pred ccchh----hHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH----
Confidence 22211 223345556667788888888877899999994 789999999999999999999987776655411
Q ss_pred CCCCCCCCCCcccCCCCC-CcccCCCC--CCccccccCCChhHHHHHHHHhhhcccccEEEEcchhhcchHHHHHHHHhc
Q 036871 166 HKNVSSDSEPFVMPHFPG-EIKLTRNQ--LPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKAL 242 (383)
Q Consensus 166 ~~~~~~~~~~~~~P~~~~-~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (383)
...+ ..+|+++. .+.++..+ ++.+ +.. ....+........+++++++||+++||+.+++.++...
T Consensus 149 -~~~~-----~~~pg~p~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 216 (446)
T PLN00414 149 -AELG-----FPPPDYPLSKVALRGHDANVCSL---FAN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQC 216 (446)
T ss_pred -hhcC-----CCCCCCCCCcCcCchhhcccchh---hcc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhc
Confidence 1111 11345443 11111111 2222 211 11223333445667899999999999999999887755
Q ss_pred CCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCcEEEEE
Q 036871 243 GRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEASRRNFIWVV 322 (383)
Q Consensus 243 ~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~viw~~ 322 (383)
+++++.|||+....... .....+.++.+|||.+++++||||||||+...+.+++.++..+|+..+.+++|++
T Consensus 217 ~~~v~~VGPl~~~~~~~--------~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvv 288 (446)
T PLN00414 217 QRKVLLTGPMLPEPQNK--------SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAV 288 (446)
T ss_pred CCCeEEEcccCCCcccc--------cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 56799999996532100 0011245799999999889999999999999999999999999999999999999
Q ss_pred ecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 323 RRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 323 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
...... ++....+|++|+++....++++.+|+||.+||+|+++++|||||||||++||
T Consensus 289 r~~~~~---~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea 346 (446)
T PLN00414 289 MPPKGS---STVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWES 346 (446)
T ss_pred ecCCCc---ccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHH
Confidence 864211 1111238999999999999999999999999999999999999999999996
No 7
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=6.8e-48 Score=352.56 Aligned_cols=345 Identities=26% Similarity=0.462 Sum_probs=249.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
.+.||+++|++++||++||+.||+.|+.+|+.||+++++.+...+.+. . . ...++.+..++++.. ++++++.+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~-~--~~~~~~v~~~~~p~~-~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N-L--FPHNIVFRSVTVPHV-DGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c-c--CCCCceEEEEECCCc-CCCCCccccc
Confidence 468999999999999999999999999999999999998865444331 0 0 011233444444432 3666654433
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhhhCC
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEP 165 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~~~~ 165 (383)
..... .....+......+.+.+++.|++.++||||+| +..|+..+|+++|||.+.|+++++.....+.. +
T Consensus 79 ~~~~~----~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-----~ 148 (453)
T PLN02764 79 SEIPV----TSADLLMSAMDLTRDQVEVVVRAVEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-----P 148 (453)
T ss_pred ccCCh----hHHHHHHHHHHHhHHHHHHHHHhCCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-----c
Confidence 22221 22334455556677888888887788999999 57799999999999999999999877766542 1
Q ss_pred CCCCCCCCCCcccCCCCCC-cccCCCCCCccccccCC--ChhHHHHHHHHhhhcccccEEEEcchhhcchHHHHHHHHhc
Q 036871 166 HKNVSSDSEPFVMPHFPGE-IKLTRNQLPDFVKQDMG--DNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKAL 242 (383)
Q Consensus 166 ~~~~~~~~~~~~~P~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 242 (383)
...++ ..+|+++.+ ..++.++++.+...... .+.+..+...+.....+++++++||+++||+.++++++...
T Consensus 149 ~~~~~-----~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~ 223 (453)
T PLN02764 149 GGELG-----VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHC 223 (453)
T ss_pred cccCC-----CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhc
Confidence 11111 123666531 11333444432110010 11233445555455667889999999999999999987644
Q ss_pred CCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCcEEEEE
Q 036871 243 GRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEASRRNFIWVV 322 (383)
Q Consensus 243 ~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~viw~~ 322 (383)
+++++.|||++..... ....+.++.+|||.+++++||||||||+..++.+++.++..+|+..+.+++|++
T Consensus 224 ~~~v~~VGPL~~~~~~----------~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~ 293 (453)
T PLN02764 224 RKKVLLTGPVFPEPDK----------TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAV 293 (453)
T ss_pred CCcEEEeccCccCccc----------cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 5689999999653210 011356899999999889999999999999999999999999999999999999
Q ss_pred ecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 323 RRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 323 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
+..... ++....+|++|+++..+.++++.+|+||.+||+|+++++|||||||||++||
T Consensus 294 r~~~~~---~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Ea 351 (453)
T PLN02764 294 KPPRGS---STIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWES 351 (453)
T ss_pred eCCCCC---cchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHH
Confidence 853211 1111239999999999999999999999999999999999999999999996
No 8
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=9.5e-48 Score=353.00 Aligned_cols=352 Identities=26% Similarity=0.479 Sum_probs=239.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEE--EeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRG--VKASV--ITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGC 82 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rG--H~Vt~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 82 (383)
+.||+++|++++||++||+.||+.|+.|| +.||+ +++..+...+.+..........+++++.+|.... .+.+.
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~~ 79 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTP---YSSSS 79 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCC---CCCcc
Confidence 45999999999999999999999999998 55665 4443322211111111000112578888764321 11111
Q ss_pred ccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhc----CCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHh
Q 036871 83 ENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRD----HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASN 158 (383)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~ 158 (383)
.. .. .....+......+.+.+.+.|++ .+++|||+|.+..|+..+|+++|||.+.|++++++....+.
T Consensus 80 ~~--~~------~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~ 151 (451)
T PLN03004 80 TS--RH------HHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSF 151 (451)
T ss_pred cc--cc------CHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHH
Confidence 11 11 11111222222333444444443 24599999999999999999999999999999998887776
Q ss_pred hhhhhC-C--CCCCCCCCCCcccCCCCCCcccCCCCCCccccccCCC-hhHHHHHHHHhhhcccccEEEEcchhhcchHH
Q 036871 159 CLALYE-P--HKNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGD-NDFSRLLKAIDDSDLRSYGVAVNSFYELEPAY 234 (383)
Q Consensus 159 ~~~~~~-~--~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (383)
+.+... . ..... ...+..+|+++. ++.++++.+ +... ......+........+++++++||+++||+..
T Consensus 152 ~~~~~~~~~~~~~~~-~~~~v~iPg~p~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~ 224 (451)
T PLN03004 152 YLPTIDETTPGKNLK-DIPTVHIPGVPP---MKGSDMPKA---VLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRA 224 (451)
T ss_pred HHHhccccccccccc-cCCeecCCCCCC---CChHHCchh---hcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHH
Confidence 654211 0 00111 112346788875 566777765 3222 12223344444556678899999999999999
Q ss_pred HHHHHHhcC-CcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHh
Q 036871 235 ADHYRKALG-RRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEA 313 (383)
Q Consensus 235 ~~~~~~~~~-~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~ 313 (383)
++.++..++ ++++.|||++...... . .. .+ .+.++.+|||.+++++||||||||+..++.+++++++.+|+.
T Consensus 225 l~~l~~~~~~~~v~~vGPl~~~~~~~----~-~~-~~-~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~ 297 (451)
T PLN03004 225 IKAITEELCFRNIYPIGPLIVNGRIE----D-RN-DN-KAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEK 297 (451)
T ss_pred HHHHHhcCCCCCEEEEeeeccCcccc----c-cc-cc-hhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 998876543 5799999997422100 0 00 11 245799999998888999999999999999999999999999
Q ss_pred CCCcEEEEEecCCCC-CCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 314 SRRNFIWVVRRNKND-GGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 314 ~~~~viw~~~~~~~~-~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
++++|||+++..... ..+.+....+|++|++|....|+++.+|+||.+||+|+++++|||||||||++||
T Consensus 298 s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEa 368 (451)
T PLN03004 298 SGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEA 368 (451)
T ss_pred CCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHH
Confidence 999999999853210 0000111138899999999999999999999999999999999999999999996
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.3e-47 Score=353.83 Aligned_cols=346 Identities=27% Similarity=0.478 Sum_probs=244.9
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFA-SRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCEN 84 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~-~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 84 (383)
.+.||+++|+|++||++||+.||+.|+ ++|++||+++++.+...+.+.... ..++++..+|.+.. .++++...
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~----~~~i~~~~lp~p~~-~glp~~~~- 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN----STGVDIVGLPSPDI-SGLVDPSA- 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc----CCCceEEECCCccc-cCCCCCCc-
Confidence 357999999999999999999999998 789999999999765433222110 11578888875542 23431111
Q ss_pred ccccchhhhHHHHHHHHHHHHHhHHHHHHHhhc--CCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhh
Q 036871 85 LDAITNEVNKELIVKFVGATTKLQEPLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLAL 162 (383)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~ 162 (383)
.....+......+.+.+++.+++ .+++|||+|.+..|+..+|+++|||.+.|+++++.....+.+.+.
T Consensus 78 ----------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 147 (481)
T PLN02992 78 ----------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPT 147 (481)
T ss_pred ----------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhh
Confidence 01112222333455666666665 468999999999999999999999999999998877665554432
Q ss_pred hC-CCCC-CCCCCCCcccCCCCCCcccCCCCCCccccccCCChhHHHHHHHHhhhcccccEEEEcchhhcchHHHHHHHH
Q 036871 163 YE-PHKN-VSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRK 240 (383)
Q Consensus 163 ~~-~~~~-~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (383)
.. +... ...+..+..+|+++. ++..+++... ....+.....+........+++++++||+++||+..++.++.
T Consensus 148 ~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~--~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~ 222 (481)
T PLN02992 148 LDKDIKEEHTVQRKPLAMPGCEP---VRFEDTLDAY--LVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQD 222 (481)
T ss_pred hccccccccccCCCCcccCCCCc---cCHHHhhHhh--cCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhh
Confidence 11 1110 001112345777764 4555666431 111112222333333456678899999999999999988764
Q ss_pred h--c----CCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhC
Q 036871 241 A--L----GRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEAS 314 (383)
Q Consensus 241 ~--~----~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~ 314 (383)
. . .+.++.|||++.... . ...+.++.+|||.+++++||||||||+..++.+++++++.+|+.+
T Consensus 223 ~~~~~~~~~~~v~~VGPl~~~~~-~----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s 291 (481)
T PLN02992 223 PKLLGRVARVPVYPIGPLCRPIQ-S----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMS 291 (481)
T ss_pred ccccccccCCceEEecCccCCcC-C----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHc
Confidence 2 1 257999999965311 0 113567999999987789999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCC------------CchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhcc
Q 036871 315 RRNFIWVVRRNKNDG------------GEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIE 382 (383)
Q Consensus 315 ~~~viw~~~~~~~~~------------~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~E 382 (383)
+++|||+++...... .+++....+|+||++|+...|+++.+|+||.+||+|+++++||||||+||++|
T Consensus 292 ~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~E 371 (481)
T PLN02992 292 QQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLE 371 (481)
T ss_pred CCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHH
Confidence 999999997421100 00111224899999999999999999999999999999999999999999999
Q ss_pred C
Q 036871 383 A 383 (383)
Q Consensus 383 a 383 (383)
|
T Consensus 372 a 372 (481)
T PLN02992 372 S 372 (481)
T ss_pred H
Confidence 6
No 10
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.4e-47 Score=348.41 Aligned_cols=336 Identities=27% Similarity=0.451 Sum_probs=236.8
Q ss_pred CCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCC-C
Q 036871 4 KVPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEG-C 82 (383)
Q Consensus 4 ~~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~ 82 (383)
+|++.||+++|+|++||++||+.||+.|+.+|+.||+++++.+...+... ...+++++.++ ++++++ .
T Consensus 2 ~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip-----dglp~~~~ 70 (449)
T PLN02173 2 EKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS-----DGYDQGGF 70 (449)
T ss_pred CCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC-----CCCCCccc
Confidence 46678999999999999999999999999999999999998765443221 01257888775 255552 2
Q ss_pred ccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhc----CCC-CEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHH
Q 036871 83 ENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRD----HKP-DCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCAS 157 (383)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~-D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~ 157 (383)
+... ... .++. .....+.+.++++|++ .+| +|||+|.+..|+..+|+++|||.+.|++++.+....+
T Consensus 71 ~~~~--~~~---~~~~---~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~ 142 (449)
T PLN02173 71 SSAG--SVP---EYLQ---NFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYIN 142 (449)
T ss_pred cccc--CHH---HHHH---HHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHH
Confidence 2111 110 2222 2222345555555543 245 9999999999999999999999999999887666544
Q ss_pred hhhhhhCCCCCCCCCCCCcccCCCCCCcccCCCCCCccccccCC---ChhHHHHHHHHhhhcccccEEEEcchhhcchHH
Q 036871 158 NCLALYEPHKNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMG---DNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAY 234 (383)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (383)
+.. ... .......+|+++. ++.++++.+ +.. ...+...+........+++++++||++++|+.+
T Consensus 143 ~~~-~~~------~~~~~~~~pg~p~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 209 (449)
T PLN02173 143 YLS-YIN------NGSLTLPIKDLPL---LELQDLPTF---VTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHE 209 (449)
T ss_pred HhH-Hhc------cCCccCCCCCCCC---CChhhCChh---hcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHH
Confidence 321 110 0112234677765 556677765 321 112222232333456678899999999999998
Q ss_pred HHHHHHhcCCcEEEeCcCCCCCC--Ccc-chhccCCCCC--cChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHH
Q 036871 235 ADHYRKALGRRAWHIGPVSLCNR--NFE-DKALWGKQAS--IDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIAT 309 (383)
Q Consensus 235 ~~~~~~~~~~~v~~vGp~~~~~~--~~~-~~~~~~~~~~--~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~ 309 (383)
++.++.. ++++.|||+++... ... .........| ..++++.+||+.++++++|||||||+...+.+++.+++.
T Consensus 210 ~~~~~~~--~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~ 287 (449)
T PLN02173 210 NELLSKV--CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIAS 287 (449)
T ss_pred HHHHHhc--CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHH
Confidence 8888643 46999999964210 000 0000000111 124569999999877889999999999999999999999
Q ss_pred HHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 310 GLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 310 a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
+| .+.++||++...... .+|++++++..++|+++.+|+||.+||+|+++++|||||||||++||
T Consensus 288 gL--s~~~flWvvr~~~~~--------~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Ea 351 (449)
T PLN02173 288 AI--SNFSYLWVVRASEES--------KLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEG 351 (449)
T ss_pred Hh--cCCCEEEEEeccchh--------cccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHH
Confidence 99 567899999854321 28889888887889999999999999999999999999999999996
No 11
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=5.2e-47 Score=350.77 Aligned_cols=356 Identities=27% Similarity=0.461 Sum_probs=244.2
Q ss_pred CCCCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhh--H-hhh-hhcCC-CcceEeeeCCCcc
Q 036871 1 MGSKVPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKS--V-ERA-NEMGI-ELDVKTIKFPSVE 75 (383)
Q Consensus 1 m~~~~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~--~-~~~-~~~~~-~v~~~~~~~~~~~ 75 (383)
|.++..+.||+++|+|++||++||+.||+.|+.+|..||+++++.+...+.+. . ... ...+. .+.|..++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC-----
Confidence 78888899999999999999999999999999999999999999765544321 0 000 00011 13333332
Q ss_pred CCCCCCCccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhc----CC-CCEEEecCCCchHHHHHHHhCCCcEEEecch
Q 036871 76 AGLPEGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRD----HK-PDCLVADIFFPWATDAAAKFGIPRLVFHGTS 150 (383)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~-~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~ 150 (383)
++++++.+.. ... ..++..+. ..+.+.+++.|++ .+ ++|||+|.+..|+..+|+++|||.+.|++++
T Consensus 76 dglp~~~~~~---~~~--~~~~~~~~---~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~ 147 (480)
T PLN02555 76 DGWAEDDPRR---QDL--DLYLPQLE---LVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQS 147 (480)
T ss_pred CCCCCCcccc---cCH--HHHHHHHH---HhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeeccc
Confidence 2455443311 111 01222222 2234444444442 23 4999999999999999999999999999999
Q ss_pred hhHHHHHhhhhhh-CCCCCCCCCCCCcccCCCCCCcccCCCCCCccccccCC---ChhHHHHHHHHhhhcccccEEEEcc
Q 036871 151 FFSLCASNCLALY-EPHKNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMG---DNDFSRLLKAIDDSDLRSYGVAVNS 226 (383)
Q Consensus 151 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (383)
++....+++++.. .+......+..+..+|+++. ++.++++.+ +.. ...+...+........+++++++||
T Consensus 148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNT 221 (480)
T PLN02555 148 CACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSF---LHPSSPYPFLRRAILGQYKNLDKPFCILIDT 221 (480)
T ss_pred HHHHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCccc---ccCCCCchHHHHHHHHHHHhcccCCEEEEEc
Confidence 9888777665321 01111111123345888875 666777765 321 1122222333334566788999999
Q ss_pred hhhcchHHHHHHHHhcCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHH
Q 036871 227 FYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLME 306 (383)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~ 306 (383)
+++||+.+++.++... + ++.|||+......... ..+...+..+.++.+||+.+++++||||||||+..++.+++.+
T Consensus 222 f~eLE~~~~~~l~~~~-~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~e 297 (480)
T PLN02555 222 FQELEKEIIDYMSKLC-P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDE 297 (480)
T ss_pred hHHHhHHHHHHHhhCC-C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHH
Confidence 9999999998886533 4 9999999754211100 1111113346789999999877889999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEecCCCCCCchhh-hccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 307 IATGLEASRRNFIWVVRRNKNDGGEEEK-EAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 307 ~~~a~~~~~~~viw~~~~~~~~~~~~~~-~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
++.+++++++++||+++..... .+. ...+|+++.++. ++|+++.+|+||.+||+|+++++|||||||||++||
T Consensus 298 la~~l~~~~~~flW~~~~~~~~---~~~~~~~lp~~~~~~~-~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea 371 (480)
T PLN02555 298 IAYGVLNSGVSFLWVMRPPHKD---SGVEPHVLPEEFLEKA-GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEA 371 (480)
T ss_pred HHHHHHhcCCeEEEEEecCccc---ccchhhcCChhhhhhc-CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHH
Confidence 9999999999999999743110 000 012788887765 456788899999999999999999999999999996
No 12
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6e-47 Score=349.20 Aligned_cols=344 Identities=28% Similarity=0.477 Sum_probs=237.6
Q ss_pred CCCCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCC
Q 036871 1 MGSKVPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPE 80 (383)
Q Consensus 1 m~~~~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 80 (383)
|....++.||+++|++++||++||+.||+.|+.||+.||+++++.+... .. . ...++++..+| +++++
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-~----~~~~i~~~~ip-----~glp~ 68 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-D----DFTDFQFVTIP-----ESLPE 68 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-c----CCCCeEEEeCC-----CCCCc
Confidence 5544457799999999999999999999999999999999999876321 11 0 01246777665 24554
Q ss_pred C-CccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhc------CCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhH
Q 036871 81 G-CENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRD------HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFS 153 (383)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~ 153 (383)
+ .+. .... ..+..+.+ .+.+.+++.|++ .+++|||+|.+..|+..+|+++|||.+.|++++++.
T Consensus 69 ~~~~~---~~~~---~~~~~~~~---~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~ 139 (451)
T PLN02410 69 SDFKN---LGPI---EFLHKLNK---ECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATA 139 (451)
T ss_pred ccccc---cCHH---HHHHHHHH---HhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHH
Confidence 2 121 1111 22222222 223333333332 356999999999999999999999999999999887
Q ss_pred HHHHhhhhhhC------CCCCCCCCCCCcccCCCCCCcccCCCCCCccccccCC-ChhHHHHHHHHhhhcccccEEEEcc
Q 036871 154 LCASNCLALYE------PHKNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMG-DNDFSRLLKAIDDSDLRSYGVAVNS 226 (383)
Q Consensus 154 ~~~~~~~~~~~------~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (383)
...+.+..... +..... ......+|+++. ++.++++.+ ... ...+...+.... ...+++++++||
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iPg~~~---~~~~dlp~~---~~~~~~~~~~~~~~~~-~~~~~~~vlvNT 211 (451)
T PLN02410 140 FVCRSVFDKLYANNVLAPLKEPK-GQQNELVPEFHP---LRCKDFPVS---HWASLESIMELYRNTV-DKRTASSVIINT 211 (451)
T ss_pred HHHHHHHHHHHhccCCCCccccc-cCccccCCCCCC---CChHHCcch---hcCCcHHHHHHHHHHh-hcccCCEEEEeC
Confidence 76665542211 111111 112235677654 444555543 111 111222222222 346788999999
Q ss_pred hhhcchHHHHHHHHhcCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHH
Q 036871 227 FYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLME 306 (383)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~ 306 (383)
+++||+.++++++...+.+++.|||++...... ...+....++.+|||.+++++||||||||+..++.+++++
T Consensus 212 f~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~-------~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~e 284 (451)
T PLN02410 212 ASCLESSSLSRLQQQLQIPVYPIGPLHLVASAP-------TSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVME 284 (451)
T ss_pred hHHhhHHHHHHHHhccCCCEEEecccccccCCC-------ccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHH
Confidence 999999999998776667899999997542110 0111223568999999887899999999999999999999
Q ss_pred HHHHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 307 IATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 307 ~~~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
++.+|+.++++|||+++..... +++....+|++|++|... |.++.+|+||.+||+|+++++|||||||||++||
T Consensus 285 la~gLe~s~~~FlWv~r~~~~~--~~~~~~~lp~~f~er~~~-~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea 358 (451)
T PLN02410 285 TASGLDSSNQQFLWVIRPGSVR--GSEWIESLPKEFSKIISG-RGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLES 358 (451)
T ss_pred HHHHHHhcCCCeEEEEccCccc--ccchhhcCChhHHHhccC-CeEEEccCCHHHHhCCCccCeeeecCchhHHHHH
Confidence 9999999999999999853211 011111289999998754 4566799999999999999999999999999996
No 13
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=5.5e-47 Score=349.06 Aligned_cols=353 Identities=25% Similarity=0.446 Sum_probs=240.8
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCCCCCc-cchhhHhhhhhcCCCcceEeeeCCCccCCCCCC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRG--VKASVITTPANGP-YVSKSVERANEMGIELDVKTIKFPSVEAGLPEG 81 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rG--H~Vt~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 81 (383)
|.+.||+++|+|++||++||+.||+.|+.+| ..||+++++.+.. .+....+.......+++|..+|.... .+..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~---~~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE---KPTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC---CCcc
Confidence 3467999999999999999999999999998 9999999987642 22222111000012588888873211 1110
Q ss_pred CccccccchhhhHHHHHHHHHHH-HHhHHHHHHHhhcC----C-CCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHH
Q 036871 82 CENLDAITNEVNKELIVKFVGAT-TKLQEPLEQLLRDH----K-PDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLC 155 (383)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~----~-~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~ 155 (383)
....... ..+..+...+ ..+.+.+.+.+++. + .+|||+|.+..|+..+|+++|||.+.|+++++....
T Consensus 78 -~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~ 151 (468)
T PLN02207 78 -GGTQSVE-----AYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLA 151 (468)
T ss_pred -ccccCHH-----HHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHH
Confidence 0110000 1121122211 22244455555431 3 389999999999999999999999999999987777
Q ss_pred HHhhhhhhC-CCCCC--CCCCCCcccCCCCCCcccCCCCCCccccccCCChhHHHHHHHHhhhcccccEEEEcchhhcch
Q 036871 156 ASNCLALYE-PHKNV--SSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEP 232 (383)
Q Consensus 156 ~~~~~~~~~-~~~~~--~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (383)
.+.+.+... ..... +....+..+|+++.. ++.++++.+ +...+.+..+. .......+++++++||++++|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~--l~~~dlp~~---~~~~~~~~~~~-~~~~~~~~~~~vlvNtf~~LE~ 225 (468)
T PLN02207 152 MMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP--VPANVLPSA---LFVEDGYDAYV-KLAILFTKANGILVNSSFDIEP 225 (468)
T ss_pred HHHHhhhccccccccCcCCCCCeEECCCCCCC--CChHHCcch---hcCCccHHHHH-HHHHhcccCCEEEEEchHHHhH
Confidence 666554221 11111 111233567887322 566777765 32222233333 3334567789999999999999
Q ss_pred HHHHHHHH-hcCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHH
Q 036871 233 AYADHYRK-ALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGL 311 (383)
Q Consensus 233 ~~~~~~~~-~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~ 311 (383)
++++.++. ...++++.|||++........ ......++++.+||+.++++++|||||||+..++.+++++++.+|
T Consensus 226 ~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~-----~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l 300 (468)
T PLN02207 226 YSVNHFLDEQNYPSVYAVGPIFDLKAQPHP-----EQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGL 300 (468)
T ss_pred HHHHHHHhccCCCcEEEecCCcccccCCCC-----ccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHH
Confidence 98888864 344789999999764311100 000112367999999987789999999999999999999999999
Q ss_pred HhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 312 EASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 312 ~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
++++++|||+++.... .. ...+|++++++.. +|.++.+|+||.+||+|+++++|||||||||++||
T Consensus 301 ~~~~~~flW~~r~~~~----~~-~~~lp~~f~er~~-~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Ea 366 (468)
T PLN02207 301 ELCQYRFLWSLRTEEV----TN-DDLLPEGFLDRVS-GRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVES 366 (468)
T ss_pred HHCCCcEEEEEeCCCc----cc-cccCCHHHHhhcC-CCeEEEEeCCHHHHhcccccceeeecCccccHHHH
Confidence 9999999999985321 00 1138899988765 44577799999999999999999999999999996
No 14
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.4e-47 Score=350.39 Aligned_cols=343 Identities=26% Similarity=0.443 Sum_probs=236.4
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHH--HHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKL--FASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCE 83 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~--L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 83 (383)
.+.||+++|+|++||++||+.||+. |++||++||+++++.+.+.+..... .-..+++..++ ++++++.+
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~----~~~~~~~~~~~-----~glp~~~~ 77 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEK----PRRPVDLVFFS-----DGLPKDDP 77 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccC----CCCceEEEECC-----CCCCCCcc
Confidence 4679999999999999999999999 5699999999999987655432200 00123443332 24554431
Q ss_pred cccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhh-
Q 036871 84 NLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLAL- 162 (383)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~- 162 (383)
. .....+....+.+.+.+++.+++.++||||+|.+..|+..+|+++|||.+.|++.++..+..+.+.+.
T Consensus 78 ~----------~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~ 147 (456)
T PLN02210 78 R----------APETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK 147 (456)
T ss_pred c----------CHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc
Confidence 1 11111112222446677778887789999999999999999999999999999988877766655421
Q ss_pred hCCCCCCCCCCCCcccCCCCCCcccCCCCCCccccccCCCh--hHHHHHHHHhhhcccccEEEEcchhhcchHHHHHHHH
Q 036871 163 YEPHKNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDN--DFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRK 240 (383)
Q Consensus 163 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 240 (383)
..+.........+..+|+++. ++.++++.+ +.... .+..+..........++++++||+.++|+..++.+++
T Consensus 148 ~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 221 (456)
T PLN02210 148 TNSFPDLEDLNQTVELPALPL---LEVRDLPSF---MLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD 221 (456)
T ss_pred cCCCCcccccCCeeeCCCCCC---CChhhCChh---hhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh
Confidence 111111111012245777764 455566654 22221 2333444454455677899999999999999988865
Q ss_pred hcCCcEEEeCcCCCCC--CCccchhccCC--CCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCCC
Q 036871 241 ALGRRAWHIGPVSLCN--RNFEDKALWGK--QASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEASRR 316 (383)
Q Consensus 241 ~~~~~v~~vGp~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~ 316 (383)
. .++++|||++... .........+. .-|..+.++.+||+.++++++|||||||+...+.+++++++.+|+.+++
T Consensus 222 -~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~ 299 (456)
T PLN02210 222 -L-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGV 299 (456)
T ss_pred -c-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Confidence 3 5799999997421 00000000000 1133467899999998778999999999999999999999999999999
Q ss_pred cEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 317 NFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 317 ~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
+|||+++..... + .++.++++..+++.++.+|+||.+||+|+++++|||||||||++||
T Consensus 300 ~flw~~~~~~~~----~----~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Ea 358 (456)
T PLN02210 300 PFLWVIRPKEKA----Q----NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIET 358 (456)
T ss_pred CEEEEEeCCccc----c----chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHH
Confidence 999999754321 0 2345555543344467799999999999999999999999999996
No 15
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.6e-46 Score=349.84 Aligned_cols=348 Identities=28% Similarity=0.497 Sum_probs=246.2
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCC----CeEEEEeCCCCCc----cchhhHhhhhhcCCCcceEeeeCCCccCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRG----VKASVITTPANGP----YVSKSVERANEMGIELDVKTIKFPSVEAG 77 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rG----H~Vt~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 77 (383)
.+.||+++|++++||++||+.||+.|+.|| +.||+++++.... .+..........+.+++++.+|...
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---- 77 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE---- 77 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC----
Confidence 467999999999999999999999999997 7899999876532 2222211111112247777776431
Q ss_pred CCCCCccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcC--CCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHH
Q 036871 78 LPEGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDH--KPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLC 155 (383)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~ 155 (383)
.+.+.+. . . ..+......+.+.+++++++. +++|||+|.+..|+..+|+++|||.+.|+++++....
T Consensus 78 ~p~~~e~-----~----~--~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~ 146 (480)
T PLN00164 78 PPTDAAG-----V----E--EFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLA 146 (480)
T ss_pred CCCcccc-----H----H--HHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHH
Confidence 2222211 0 1 112223334566666666653 5699999999999999999999999999999998877
Q ss_pred HHhhhhhhCCC--CCCCCCCCCcccCCCCCCcccCCCCCCccccccCCC-h-hHHHHHHHHhhhcccccEEEEcchhhcc
Q 036871 156 ASNCLALYEPH--KNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGD-N-DFSRLLKAIDDSDLRSYGVAVNSFYELE 231 (383)
Q Consensus 156 ~~~~~~~~~~~--~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (383)
.+.+++..... ........+..+|+++. ++.++++.+ +... + .+..+. .......+++++++||+++||
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~---~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE 219 (480)
T PLN00164 147 LMLRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAP---VMDKKSPNYAWFV-YHGRRFMEAAGIIVNTAAELE 219 (480)
T ss_pred HHhhhhhhcccccCcccccCcceecCCCCC---CChHHCCch---hcCCCcHHHHHHH-HHHHhhhhcCEEEEechHHhh
Confidence 77665432110 00111112335788765 566677765 3221 1 122232 233455678899999999999
Q ss_pred hHHHHHHHHhc------CCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHH
Q 036871 232 PAYADHYRKAL------GRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLM 305 (383)
Q Consensus 232 ~~~~~~~~~~~------~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~ 305 (383)
+..++.++... .++++.|||++...... ..+..++++.+||+.+++++||||||||+..++.++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~v~~vGPl~~~~~~~--------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ 291 (480)
T PLN00164 220 PGVLAAIADGRCTPGRPAPTVYPIGPVISLAFTP--------PAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVR 291 (480)
T ss_pred HHHHHHHHhccccccCCCCceEEeCCCccccccC--------CCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHH
Confidence 99998887642 15799999997432111 01124578999999998889999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEecCCCC----CCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhc
Q 036871 306 EIATGLEASRRNFIWVVRRNKND----GGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTI 381 (383)
Q Consensus 306 ~~~~a~~~~~~~viw~~~~~~~~----~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~ 381 (383)
+++.+|+.+++++||+++..... ..+++....+|++++++....++++.+|+||.+||+|+++++|||||||||++
T Consensus 292 ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~ 371 (480)
T PLN00164 292 EIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVL 371 (480)
T ss_pred HHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHH
Confidence 99999999999999999853210 00011122388999999999999999999999999999999999999999999
Q ss_pred cC
Q 036871 382 EA 383 (383)
Q Consensus 382 Ea 383 (383)
||
T Consensus 372 Ea 373 (480)
T PLN00164 372 ES 373 (480)
T ss_pred HH
Confidence 96
No 16
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2e-46 Score=346.80 Aligned_cols=339 Identities=27% Similarity=0.455 Sum_probs=236.4
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
++.||+++|+|++||++||+.||+.|+.+|++||+++++.+...+.+.... ..+++++.+|. +.+++.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp~-----g~~~~~--- 72 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSISD-----GQDDDP--- 72 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECCC-----CCCCCc---
Confidence 456999999999999999999999999999999999998875544432110 12577777652 222111
Q ss_pred cccchhhhHHHHHHHHHHHH-HhHHHHHHHhhcC----CCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhh
Q 036871 86 DAITNEVNKELIVKFVGATT-KLQEPLEQLLRDH----KPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCL 160 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~----~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~ 160 (383)
.. +.. .+...+. .+.+.+++++++. .++|||+|.+..|+..+|+++|||.+.|+++++.....+.++
T Consensus 73 ---~~----~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~ 144 (448)
T PLN02562 73 ---PR----DFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAI 144 (448)
T ss_pred ---cc----cHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHH
Confidence 00 111 2223332 3455555555542 348999999999999999999999999999988776665554
Q ss_pred hhhCCCCCCCC-----CCCC-cccCCCCCCcccCCCCCCccccccCC---ChhHHHHHHHHhhhcccccEEEEcchhhcc
Q 036871 161 ALYEPHKNVSS-----DSEP-FVMPHFPGEIKLTRNQLPDFVKQDMG---DNDFSRLLKAIDDSDLRSYGVAVNSFYELE 231 (383)
Q Consensus 161 ~~~~~~~~~~~-----~~~~-~~~P~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (383)
+.......... ...+ ..+|+++. ++.++++.+ +.. .......+.+......+++++++||+++||
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE 218 (448)
T PLN02562 145 PELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWL---IGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEE 218 (448)
T ss_pred HHHhhccccccccccccccccccCCCCCC---CChhhCcch---hcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhC
Confidence 32211111111 0111 24677654 555666664 321 112223333344556678899999999999
Q ss_pred hHHHHHHHH----hcCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcc-cCCHhhHHH
Q 036871 232 PAYADHYRK----ALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIA-NFTSAQLME 306 (383)
Q Consensus 232 ~~~~~~~~~----~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~-~~~~~~~~~ 306 (383)
+..++.... +..++++.|||++...... ......+..+.++.+||+.++++++|||||||+. .++.+++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~----~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~ 294 (448)
T PLN02562 219 YDDVKNHQASYNNGQNPQILQIGPLHNQEATT----ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRT 294 (448)
T ss_pred HHHHHHHHhhhccccCCCEEEecCcccccccc----cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHH
Confidence 888776653 2357899999997643110 0001112234567899999877889999999987 689999999
Q ss_pred HHHHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 307 IATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 307 ~~~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
++.+|+++++++||+++..... .+|++++++. ++|+++.+|+||.+||+|+++++||||||+||++||
T Consensus 295 l~~~l~~~g~~fiW~~~~~~~~--------~l~~~~~~~~-~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea 362 (448)
T PLN02562 295 LALALEASGRPFIWVLNPVWRE--------GLPPGYVERV-SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEA 362 (448)
T ss_pred HHHHHHHCCCCEEEEEcCCchh--------hCCHHHHHHh-ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHH
Confidence 9999999999999999754221 1787887775 467788899999999999999999999999999996
No 17
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.5e-46 Score=343.31 Aligned_cols=346 Identities=26% Similarity=0.480 Sum_probs=245.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCCccch--hhHhhhhhcCCCcceEeeeCCCccCCC-CCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASR-GVKASVITTPANGPYVS--KSVERANEMGIELDVKTIKFPSVEAGL-PEG 81 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~r-GH~Vt~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~ 81 (383)
-+.||+++|+|++||++||+.||+.|+.+ |..||++++......+. ....... ...++++..+|.+.. +++ +.+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~-~~l~~~~ 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDV-DNLVEPD 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCcc-ccCCCCC
Confidence 35799999999999999999999999987 99999998776543221 1111000 011477888874432 122 111
Q ss_pred CccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcC--CCCEEEecCCCchHHHHHHHhCCC-cEEEecchhhHHHHHh
Q 036871 82 CENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDH--KPDCLVADIFFPWATDAAAKFGIP-RLVFHGTSFFSLCASN 158 (383)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~D~vi~d~~~~~~~~ia~~l~iP-~v~~~~~~~~~~~~~~ 158 (383)
. +....+......+.+.+++.|++. +++|||+|.+..|+..+|+++||| .+.+++++.+....++
T Consensus 80 -----~-------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~ 147 (470)
T PLN03015 80 -----A-------TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMV 147 (470)
T ss_pred -----c-------cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHH
Confidence 0 112234444556677777777753 679999999999999999999999 5777787776665665
Q ss_pred hhhhhCC-CCC-CCCCCCCcccCCCCCCcccCCCCCCccccccC-CCh-hHHHHHHHHhhhcccccEEEEcchhhcchHH
Q 036871 159 CLALYEP-HKN-VSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDM-GDN-DFSRLLKAIDDSDLRSYGVAVNSFYELEPAY 234 (383)
Q Consensus 159 ~~~~~~~-~~~-~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 234 (383)
+++.... ... ......+..+|+++. ++.++++.+ +. ... .+..+.. ......+++++++||+++||+..
T Consensus 148 ~l~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~---~~~~~~~~~~~~~~-~~~~~~~a~gvlvNTf~eLE~~~ 220 (470)
T PLN03015 148 YLPVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMET---MLDRSDQQYKECVR-SGLEVPMSDGVLVNTWEELQGNT 220 (470)
T ss_pred hhhhhhcccccccCCCCCeeeCCCCCC---CChHHCCHh---hcCCCcHHHHHHHH-HHHhcccCCEEEEechHHHhHHH
Confidence 5542111 010 001112356788875 666777754 22 111 2333443 33457789999999999999999
Q ss_pred HHHHHHhc------CCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHH
Q 036871 235 ADHYRKAL------GRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIA 308 (383)
Q Consensus 235 ~~~~~~~~------~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~ 308 (383)
++.++..+ ++.++.|||+..... ....+.++.+|||.+++++||||||||+..++.+++++++
T Consensus 221 ~~~l~~~~~~~~~~~~~v~~VGPl~~~~~-----------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela 289 (470)
T PLN03015 221 LAALREDMELNRVMKVPVYPIGPIVRTNV-----------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELA 289 (470)
T ss_pred HHHHHhhcccccccCCceEEecCCCCCcc-----------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHH
Confidence 99887642 256999999974210 0112457999999988889999999999999999999999
Q ss_pred HHHHhCCCcEEEEEecCCCC----CCc-hhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 309 TGLEASRRNFIWVVRRNKND----GGE-EEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 309 ~a~~~~~~~viw~~~~~~~~----~~~-~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
.+|+.++++|||+++..... ..+ ++....+|+++++++...++++.+|+||.+||+|+++++|||||||||++||
T Consensus 290 ~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Ea 369 (470)
T PLN03015 290 WGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLES 369 (470)
T ss_pred HHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHH
Confidence 99999999999999743110 000 1122248999999999999999999999999999999999999999999996
No 18
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=6.5e-46 Score=341.28 Aligned_cols=345 Identities=23% Similarity=0.405 Sum_probs=232.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFAS-RGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCEN 84 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~-rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 84 (383)
.+.||+++|+|++||++||+.||+.|+. +|+.||+++++.+.. +...... ....+++++.++ ++++++.+.
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~--~~~~~~~-~~~~~i~~~~i~-----dglp~g~~~ 73 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH--RSMIPNH-NNVENLSFLTFS-----DGFDDGVIS 73 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh--hhhhccC-CCCCCEEEEEcC-----CCCCCcccc
Confidence 4569999999999999999999999996 699999999985311 1111100 001147777764 255554321
Q ss_pred ccccchhhhHHHHHHHHHHHHHhHHHHHHHhhc-----CCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhh
Q 036871 85 LDAITNEVNKELIVKFVGATTKLQEPLEQLLRD-----HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNC 159 (383)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~ 159 (383)
... .....+......+.+.+.+++++ .+++|||+|.+..|+..+|+++|||.+.|+++++.....+++
T Consensus 74 ~~~-------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~ 146 (455)
T PLN02152 74 NTD-------DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYN 146 (455)
T ss_pred ccc-------cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 111 11122333333344455544443 235999999999999999999999999999999988777665
Q ss_pred hhhhCCCCCCCCCCCCcccCCCCCCcccCCCCCCccccccCC---ChhHHHHHHHHhhhcc--cccEEEEcchhhcchHH
Q 036871 160 LALYEPHKNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMG---DNDFSRLLKAIDDSDL--RSYGVAVNSFYELEPAY 234 (383)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~ 234 (383)
+.... ..+..+|+++. ++.++++.+ +.. ...+...+........ .++++++||+++||+..
T Consensus 147 ~~~~~--------~~~~~iPglp~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 212 (455)
T PLN02152 147 YSTGN--------NSVFEFPNLPS---LEIRDLPSF---LSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEF 212 (455)
T ss_pred hhccC--------CCeeecCCCCC---CchHHCchh---hcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHH
Confidence 43210 12335777765 556677776 322 1122233333333332 24689999999999999
Q ss_pred HHHHHHhcCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhC
Q 036871 235 ADHYRKALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEAS 314 (383)
Q Consensus 235 ~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~ 314 (383)
++.++. ..++.|||+.+...............+..+.++.+|||.++.++||||||||+..++.+++++++.+|+.+
T Consensus 213 ~~~l~~---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s 289 (455)
T PLN02152 213 LTAIPN---IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEG 289 (455)
T ss_pred HHhhhc---CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHc
Confidence 988854 36999999975321000000000000123458999999987789999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCCC--c-hhh-hccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 315 RRNFIWVVRRNKNDGG--E-EEK-EAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 315 ~~~viw~~~~~~~~~~--~-~~~-~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
+++|||+++....... + ++. .-.+|++++++. .+|.++.+|+||.+||+|+++++||||||+||++||
T Consensus 290 ~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea 361 (455)
T PLN02152 290 KRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLES 361 (455)
T ss_pred CCCeEEEEecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHH
Confidence 9999999986321000 0 000 001467887775 455677799999999999999999999999999996
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.4e-45 Score=340.47 Aligned_cols=339 Identities=25% Similarity=0.405 Sum_probs=233.9
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGC 82 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 82 (383)
..+.||+++|+|++||++||+.||++|++| ||+||+++++.+...+++... ..+++|+.+|. +++.+.
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~-----~~p~~~ 77 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPN-----VIPSEL 77 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCC-----CCCCcc
Confidence 457899999999999999999999999999 999999999988765555311 12688887762 223222
Q ss_pred ccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhc--CCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhh
Q 036871 83 ENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCL 160 (383)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~ 160 (383)
... .... ..+..+ ...+.+.+++.+++ .++||||+|.++.|+..+|+++|||.+.++++++.....+.++
T Consensus 78 ~~~--~~~~---~~~~~~---~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 149 (459)
T PLN02448 78 VRA--ADFP---GFLEAV---MTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHF 149 (459)
T ss_pred ccc--cCHH---HHHHHH---HHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHh
Confidence 111 0110 222222 22344455555554 4689999999999999999999999999999998766666555
Q ss_pred hhhCCCCCCCCC------CCCcccCCCCCCcccCCCCCCccccccCCCh-hHHHHHHHHhhhcccccEEEEcchhhcchH
Q 036871 161 ALYEPHKNVSSD------SEPFVMPHFPGEIKLTRNQLPDFVKQDMGDN-DFSRLLKAIDDSDLRSYGVAVNSFYELEPA 233 (383)
Q Consensus 161 ~~~~~~~~~~~~------~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 233 (383)
+........+.. .....+|+++. ++..+++.+ +.... .....+........++..+++||+++||+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~---~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 223 (459)
T PLN02448 150 DLLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPI---FHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQ 223 (459)
T ss_pred hhhhhccCCCCccccccCCccccCCCCCC---CChHHCchh---hcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHH
Confidence 322111111110 11113666653 445556654 32211 212233333344566789999999999999
Q ss_pred HHHHHHHhcCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHh
Q 036871 234 YADHYRKALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEA 313 (383)
Q Consensus 234 ~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~ 313 (383)
.++.+++.++.+++.|||+......... . ........+.++.+|++..+++++|||||||+...+.+++++++++|++
T Consensus 224 ~~~~l~~~~~~~~~~iGP~~~~~~~~~~-~-~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~ 301 (459)
T PLN02448 224 AIDALKSKFPFPVYPIGPSIPYMELKDN-S-SSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRD 301 (459)
T ss_pred HHHHHHhhcCCceEEecCcccccccCCC-c-cccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHh
Confidence 8998877666789999998653211100 0 0000111235899999998778899999999998899999999999999
Q ss_pred CCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 314 SRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 314 ~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
++++|||++..... +++++ .++|+++.+|+||.+||+|+++++||||||+||++||
T Consensus 302 ~~~~~lw~~~~~~~-------------~~~~~-~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~ea 357 (459)
T PLN02448 302 SGVRFLWVARGEAS-------------RLKEI-CGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEA 357 (459)
T ss_pred CCCCEEEEEcCchh-------------hHhHh-ccCCEEEeccCCHHHHhccCccceEEecCchhHHHHH
Confidence 99999998764321 22222 2346888899999999999999999999999999996
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.9e-44 Score=336.81 Aligned_cols=358 Identities=26% Similarity=0.430 Sum_probs=232.9
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCC---eEEEEeCCCCCc-cchhhHhhhhhcCCCcceEeeeCCCccCCCCC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRGV---KASVITTPANGP-YVSKSVERANEMGIELDVKTIKFPSVEAGLPE 80 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH---~Vt~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 80 (383)
|++.||+++|+|++||++||+.||+.|+.+|. .||++++..... ..+...........+++|+.+|.... +.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----p~ 76 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQD----PP 76 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCC----Cc
Confidence 56789999999999999999999999999984 466666543221 11111111100012588888874321 11
Q ss_pred CCccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhc-----C-CCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHH
Q 036871 81 GCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRD-----H-KPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSL 154 (383)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~-~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~ 154 (383)
+.+........ .+...+......+.+.+.+++.+ . +++|||+|.+..|+..+|+++|||.+.|+++++...
T Consensus 77 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~ 153 (475)
T PLN02167 77 PMELFVKASEA---YILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFL 153 (475)
T ss_pred cccccccchHH---HHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHH
Confidence 11100000100 11111112222233334433322 1 359999999999999999999999999999998877
Q ss_pred HHHhhhhhhC-CCC-CC--CCCCCCcccCCCCCCcccCCCCCCccccccCCChhHHHHHHHHhhhcccccEEEEcchhhc
Q 036871 155 CASNCLALYE-PHK-NV--SSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYEL 230 (383)
Q Consensus 155 ~~~~~~~~~~-~~~-~~--~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 230 (383)
..+++++... ... .+ .....+..+|+++.. ++..+++.+ +.....+. .+........+++++++||+++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~---~~~~~~~~-~~~~~~~~~~~a~~vlvNTf~eL 227 (475)
T PLN02167 154 GMMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPG---LFMKESYE-AWVEIAERFPEAKGILVNSFTEL 227 (475)
T ss_pred HHHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchh---hhCcchHH-HHHHHHHhhcccCEeeeccHHHH
Confidence 7766554211 111 00 011123457887422 344556543 22111122 22233345677889999999999
Q ss_pred chHHHHHHHHhc--CCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHH
Q 036871 231 EPAYADHYRKAL--GRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIA 308 (383)
Q Consensus 231 ~~~~~~~~~~~~--~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~ 308 (383)
|+..++.+++.. .++++.|||++...... ... .....+.++.+||+.++.++||||||||+..++.+++.+++
T Consensus 228 E~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~----~~~-~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela 302 (475)
T PLN02167 228 EPNAFDYFSRLPENYPPVYPVGPILSLKDRT----SPN-LDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIA 302 (475)
T ss_pred HHHHHHHHHhhcccCCeeEEecccccccccc----CCC-CCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHH
Confidence 999998886531 26899999997642110 000 00112468999999987789999999999999999999999
Q ss_pred HHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 309 TGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 309 ~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
.+|+.+++++||+++...... .+... .+|++++++....+ ++++|+||.+||+|+++++|||||||||++||
T Consensus 303 ~~l~~~~~~flw~~~~~~~~~-~~~~~-~lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Ea 374 (475)
T PLN02167 303 QALELVGCRFLWSIRTNPAEY-ASPYE-PLPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLES 374 (475)
T ss_pred HHHHhCCCcEEEEEecCcccc-cchhh-hCChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHH
Confidence 999999999999997532100 01111 38899988876655 66699999999999999999999999999996
No 21
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.8e-44 Score=337.47 Aligned_cols=350 Identities=28% Similarity=0.475 Sum_probs=236.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCCCCCccch---hhHhhhhhc-CCCcceEeeeCCCccCCCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRG--VKASVITTPANGPYVS---KSVERANEM-GIELDVKTIKFPSVEAGLPE 80 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rG--H~Vt~~~~~~~~~~~~---~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 80 (383)
|.||+++|+|++||++||+.||+.|+.|| ..||+++++.+..... ......... ..+++++.+|.... +.
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~----~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ----PT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC----Cc
Confidence 45999999999999999999999999998 8899999987643221 111110000 12578888764321 11
Q ss_pred CCccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhc-----CC-CCEEEecCCCchHHHHHHHhCCCcEEEecchhhHH
Q 036871 81 GCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRD-----HK-PDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSL 154 (383)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~~-~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~ 154 (383)
.. . . .....+......+.+.+++++.+ .+ .+|||+|.+..|+..+|+++|||.+.|+++++...
T Consensus 78 -~~---~-~-----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~ 147 (481)
T PLN02554 78 -TE---D-P-----TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFL 147 (481)
T ss_pred -cc---c-h-----HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHH
Confidence 00 0 0 11111112222334444444432 13 38999999999999999999999999999999888
Q ss_pred HHHhhhhhhCCC---C--CCCCCCCCcccCCCCCCcccCCCCCCccccccCCChhHHHHHHHHhhhcccccEEEEcchhh
Q 036871 155 CASNCLALYEPH---K--NVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYE 229 (383)
Q Consensus 155 ~~~~~~~~~~~~---~--~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (383)
..+.+++..... . .++....+..+|+++.. ++..+++.+ +... .+...+........+++++++||+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p--l~~~dlp~~---~~~~-~~~~~~~~~~~~~~~~~gvlvNt~~e 221 (481)
T PLN02554 148 GLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRP--YPVKCLPSV---LLSK-EWLPLFLAQARRFREMKGILVNTVAE 221 (481)
T ss_pred HHHHhhhhhccccccCccccCCCCceeECCCCCCC--CCHHHCCCc---ccCH-HHHHHHHHHHHhcccCCEEEEechHH
Confidence 777766432111 1 11111123457877422 455566654 3221 22233334445667789999999999
Q ss_pred cchHHHHHHHHh--cCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHH
Q 036871 230 LEPAYADHYRKA--LGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEI 307 (383)
Q Consensus 230 l~~~~~~~~~~~--~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~ 307 (383)
||+.....+... ..++++.|||++....... . ....++.++.+||+.+++++||||||||+..++.++++++
T Consensus 222 Le~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~~-----~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~l 295 (481)
T PLN02554 222 LEPQALKFFSGSSGDLPPVYPVGPVLHLENSGD-----D-SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREI 295 (481)
T ss_pred HhHHHHHHHHhcccCCCCEEEeCCCcccccccc-----c-cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHH
Confidence 999888877653 3368999999943221100 0 0122567899999998778899999999999999999999
Q ss_pred HHHHHhCCCcEEEEEecCCCC------CCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhc
Q 036871 308 ATGLEASRRNFIWVVRRNKND------GGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTI 381 (383)
Q Consensus 308 ~~a~~~~~~~viw~~~~~~~~------~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~ 381 (383)
+.+|+++++++||+++..... +...+....+|++++++.. +|+++.+|+||.+||+|+++++|||||||||++
T Consensus 296 a~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~ 374 (481)
T PLN02554 296 AIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTK-DIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSIL 374 (481)
T ss_pred HHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhc-cCceEEeeCCHHHHhCCcccCcccccCccchHH
Confidence 999999999999999753110 0000111126889988865 456777999999999999999999999999999
Q ss_pred cC
Q 036871 382 EA 383 (383)
Q Consensus 382 Ea 383 (383)
||
T Consensus 375 Ea 376 (481)
T PLN02554 375 ES 376 (481)
T ss_pred HH
Confidence 96
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=7.1e-40 Score=307.41 Aligned_cols=327 Identities=17% Similarity=0.203 Sum_probs=212.3
Q ss_pred CCcEEEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCcc-CCCCCCCc
Q 036871 6 PQLHVFFF-PFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVE-AGLPEGCE 83 (383)
Q Consensus 6 ~~~~il~~-~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~ 83 (383)
...||+.+ |.++.||+..+.+++++|++|||+||++++..... .... . ..+++...++..... ........
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~-~-----~~~~~~i~~~~~~~~~~~~~~~~~ 91 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH-L-----CGNITEIDASLSVEYFKKLVKSSA 91 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC-C-----CCCEEEEEcCCChHHHHHHHhhhh
Confidence 45688865 88999999999999999999999999998754211 0000 0 113433333211110 00000000
Q ss_pred ccc---cc-chhhh-HHHHHHHHHHHHHh--HHHHHHHhh--cCCCCEEEecCCCchHHHHHHHh-CCCcEEEecchhhH
Q 036871 84 NLD---AI-TNEVN-KELIVKFVGATTKL--QEPLEQLLR--DHKPDCLVADIFFPWATDAAAKF-GIPRLVFHGTSFFS 153 (383)
Q Consensus 84 ~~~---~~-~~~~~-~~~~~~~~~~~~~~--~~~l~~~l~--~~~~D~vi~d~~~~~~~~ia~~l-~iP~v~~~~~~~~~ 153 (383)
... .. ..... ......+...|+.. .+.+++.|+ +.+||+||+|.+..|+..+|+++ ++|.|.+++.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~ 171 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLA 171 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCch
Confidence 000 00 00000 01122334455543 777888887 67899999999988999999999 99988877754432
Q ss_pred HHHHhhhhhhCCCCCCC-CCCCCcccCCCCC----CcccCCCCCCcccccc------CC-ChhHHHHHHHH--------h
Q 036871 154 LCASNCLALYEPHKNVS-SDSEPFVMPHFPG----EIKLTRNQLPDFVKQD------MG-DNDFSRLLKAI--------D 213 (383)
Q Consensus 154 ~~~~~~~~~~~~~~~~~-~~~~~~~~P~~~~----~~~~~~~~l~~~~~~~------~~-~~~~~~~~~~~--------~ 213 (383)
... ..++ .+.+++|+|.+.. +|++..| +.++.... .. .....++.++. .
T Consensus 172 ~~~----------~~~gg~p~~~syvP~~~~~~~~~Msf~~R-~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~ 240 (507)
T PHA03392 172 ENF----------ETMGAVSRHPVYYPNLWRSKFGNLNVWET-INEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIR 240 (507)
T ss_pred hHH----------HhhccCCCCCeeeCCcccCCCCCCCHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHH
Confidence 111 1233 5667788885543 2222211 11110000 00 01111122222 2
Q ss_pred hhcccccEEEEcchhhcchHHHHHHHHhcCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEe
Q 036871 214 DSDLRSYGVAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICF 293 (383)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~ 293 (383)
+...+...+++|+...++.+ +++++++++|||++...+. .+++++++.+|++.+ ++++|||||
T Consensus 241 ~l~~~~~l~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~~----------~~~l~~~l~~fl~~~-~~g~V~vS~ 303 (507)
T PHA03392 241 ELRNRVQLLFVNVHPVFDNN------RPVPPSVQYLGGLHLHKKP----------PQPLDDYLEEFLNNS-TNGVVYVSF 303 (507)
T ss_pred HHHhCCcEEEEecCccccCC------CCCCCCeeeecccccCCCC----------CCCCCHHHHHHHhcC-CCcEEEEEC
Confidence 33456678899999888754 5788999999999764211 134789999999987 468999999
Q ss_pred CCccc---CCHhhHHHHHHHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCcee
Q 036871 294 GSIAN---FTSAQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGG 370 (383)
Q Consensus 294 GS~~~---~~~~~~~~~~~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~ 370 (383)
||+.. ++.+.++.+++|+++++++|||+++.... +.+ .++||++.+|+||.+||+|+++++
T Consensus 304 GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-----------~~~-----~p~Nv~i~~w~Pq~~lL~hp~v~~ 367 (507)
T PHA03392 304 GSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-----------AIN-----LPANVLTQKWFPQRAVLKHKNVKA 367 (507)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-----------ccc-----CCCceEEecCCCHHHHhcCCCCCE
Confidence 99873 67889999999999999999999875432 101 356799999999999999999999
Q ss_pred eccccccchhccC
Q 036871 371 FVTHCGWNSTIEA 383 (383)
Q Consensus 371 fItHGG~~s~~Ea 383 (383)
||||||+||++||
T Consensus 368 fItHGG~~s~~Ea 380 (507)
T PHA03392 368 FVTQGGVQSTDEA 380 (507)
T ss_pred EEecCCcccHHHH
Confidence 9999999999996
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.6e-41 Score=322.62 Aligned_cols=316 Identities=25% Similarity=0.323 Sum_probs=171.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccc-c
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLD-A 87 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 87 (383)
||+++|. +.||+.+|..|+++|++|||+||++++.... .+... ....+++..++................ .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS------KPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc------cccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 7888885 7799999999999999999999999975321 11111 012456666654432222222111100 0
Q ss_pred ----cch-hhhHHHHH-------HHHHHHHHh--HHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhH
Q 036871 88 ----ITN-EVNKELIV-------KFVGATTKL--QEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFS 153 (383)
Q Consensus 88 ----~~~-~~~~~~~~-------~~~~~~~~~--~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~ 153 (383)
... ......+. .+...|+.+ ++.+.+.+++.++|++|+|.+..|+..+|+.+++|.+.+.+.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 000 00001111 111223222 4555566777889999999999999999999999988654332211
Q ss_pred HHHHhhhhhhCCCCC-CCCCCCCcccCCCCC----CcccCCCCCCccccccCCChhHHHH-HHHHh--------------
Q 036871 154 LCASNCLALYEPHKN-VSSDSEPFVMPHFPG----EIKLTRNQLPDFVKQDMGDNDFSRL-LKAID-------------- 213 (383)
Q Consensus 154 ~~~~~~~~~~~~~~~-~~~~~~~~~~P~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~-------------- 213 (383)
..... .+.+.++.|+|.... ++++..| +.++ +. ..+... .....
T Consensus 154 ----------~~~~~~~g~p~~psyvP~~~s~~~~~msf~~R-i~N~---l~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PF00201_consen 154 ----------DLSSFSGGVPSPPSYVPSMFSDFSDRMSFWQR-IKNF---LF--YLYFRFIFRYFFSPQDKLYKKYFGFP 217 (500)
T ss_dssp ----------CCTCCTSCCCTSTTSTTCBCCCSGTTSSSST---TTS---HH--HHHHHHHHHHGGGS-TTS-EEESS-G
T ss_pred ----------hhhhhccCCCCChHHhccccccCCCccchhhh-hhhh---hh--hhhhccccccchhhHHHHHhhhcccc
Confidence 11112 245567778885443 2222221 1111 00 000011 11111
Q ss_pred ----hhcccccEEEEcchhhcchHHHHHHHHhcCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEE
Q 036871 214 ----DSDLRSYGVAVNSFYELEPAYADHYRKALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVV 289 (383)
Q Consensus 214 ----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV 289 (383)
+.+.+...+++|+...++. . ++.+|++++||+++..++ +++++++.+|++...++++|
T Consensus 218 ~~~~~~~~~~~l~l~ns~~~ld~-----p-rp~~p~v~~vGgl~~~~~------------~~l~~~~~~~~~~~~~~~vv 279 (500)
T PF00201_consen 218 FSFRELLSNASLVLINSHPSLDF-----P-RPLLPNVVEVGGLHIKPA------------KPLPEELWNFLDSSGKKGVV 279 (500)
T ss_dssp GGCHHHHHHHHHCCSSTEEE----------HHHHCTSTTGCGC-S----------------TCHHHHHHHTSTTTTTEEE
T ss_pred cccHHHHHHHHHHhhhccccCcC-----C-cchhhcccccCccccccc------------cccccccchhhhccCCCCEE
Confidence 1111223344555544442 2 345589999999976543 33789999999985468999
Q ss_pred EEEeCCccc-CCHhhHHHHHHHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCc
Q 036871 290 YICFGSIAN-FTSAQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAV 368 (383)
Q Consensus 290 ~vs~GS~~~-~~~~~~~~~~~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~ 368 (383)
||||||++. ++.+.++.+++||++++++|||+++.... ++ .++|+++.+|+||.+||+||++
T Consensus 280 ~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~------------~~-----l~~n~~~~~W~PQ~~lL~hp~v 342 (500)
T PF00201_consen 280 YVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP------------EN-----LPKNVLIVKWLPQNDLLAHPRV 342 (500)
T ss_dssp EEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG------------CH-----HHTTEEEESS--HHHHHTSTTE
T ss_pred EEecCcccchhHHHHHHHHHHHHhhCCCccccccccccc------------cc-----ccceEEEeccccchhhhhcccc
Confidence 999999985 56666899999999999999999977432 12 3456999999999999999999
Q ss_pred eeeccccccchhccC
Q 036871 369 GGFVTHCGWNSTIEA 383 (383)
Q Consensus 369 ~~fItHGG~~s~~Ea 383 (383)
++||||||+||++||
T Consensus 343 ~~fitHgG~~s~~Ea 357 (500)
T PF00201_consen 343 KLFITHGGLNSTQEA 357 (500)
T ss_dssp EEEEES--HHHHHHH
T ss_pred eeeeeccccchhhhh
Confidence 999999999999996
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=5.7e-32 Score=250.48 Aligned_cols=299 Identities=20% Similarity=0.222 Sum_probs=184.9
Q ss_pred EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccchhh
Q 036871 13 FPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEV 92 (383)
Q Consensus 13 ~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (383)
+.+|+.||++|++.||++|++|||+|++++++.+.+.+++. |+.+..++............ .. ....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~--~~-~~~~- 67 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPEN--TE-EEPI- 67 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccc--cC-cchH-
Confidence 36789999999999999999999999999999988777766 78887776432111111110 00 1111
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhhhCCCCCCCCC
Q 036871 93 NKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPHKNVSSD 172 (383)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (383)
.....+...+..+.+.+.+.+++.++|+||+|.++.++..+|+++|||+|.+++...... .++..
T Consensus 68 --~~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~-------------~~~~~ 132 (392)
T TIGR01426 68 --DIIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE-------------EFEEM 132 (392)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc-------------ccccc
Confidence 344444455555556677778888999999999888999999999999998865432110 00000
Q ss_pred CCCcccCCCCCCcccCCCCCCccccccCCChhHHHHHHHHhhh------c--ccccEEEEcchhhcchHHHHHHHHhcCC
Q 036871 173 SEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDS------D--LRSYGVAVNSFYELEPAYADHYRKALGR 244 (383)
Q Consensus 173 ~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 244 (383)
..+ ..+.+........+..... ...+.++..+..-. + ......+.. .++.+.+....+++
T Consensus 133 ~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~-----~~~~l~~~~~~~~~ 200 (392)
T TIGR01426 133 VSP-AGEGSAEEGAIAERGLAEY------VARLSALLEEHGITTPPVEFLAAPRRDLNLVY-----TPKAFQPAGETFDD 200 (392)
T ss_pred ccc-cchhhhhhhccccchhHHH------HHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEe-----CChHhCCCccccCC
Confidence 000 0000000000000000000 00112222211100 0 000001121 23334444456788
Q ss_pred cEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCcEEEEEec
Q 036871 245 RAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEASRRNFIWVVRR 324 (383)
Q Consensus 245 ~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~viw~~~~ 324 (383)
+++++||+.... .+..+|....+++++||||+||+.....+.+..+++++.+.+.++||..+.
T Consensus 201 ~~~~~Gp~~~~~-----------------~~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~ 263 (392)
T TIGR01426 201 SFTFVGPCIGDR-----------------KEDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGR 263 (392)
T ss_pred CeEEECCCCCCc-----------------cccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECC
Confidence 999999975432 112236655556889999999987766678888999999999999998866
Q ss_pred CCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 325 NKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 325 ~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
+... +.+. ..++|+++.+|+||.++|+++++ ||||||+||+.||
T Consensus 264 ~~~~---~~~~----------~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Ea 307 (392)
T TIGR01426 264 GVDP---ADLG----------ELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEA 307 (392)
T ss_pred CCCh---hHhc----------cCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHH
Confidence 5421 1111 13567999999999999999888 9999999999986
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.98 E-value=3e-32 Score=253.50 Aligned_cols=308 Identities=16% Similarity=0.084 Sum_probs=185.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc-c
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL-D 86 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~ 86 (383)
+||+|++.|+.||++|+++||++|++|||+|++++++.+...++.. |++|..++............... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 4999999999999999999999999999999999999877666654 78887775321110000000000 0
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhhhCCC
Q 036871 87 AITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPH 166 (383)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
.............+...+..+...+.+.+++.++|+||+|.+.+++..+|+++|||++.+++.+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~----------- 140 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTS----------- 140 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccc-----------
Confidence 000000012334445555666667777777899999999998888999999999999998876532110
Q ss_pred CCCCCCCCCcccCCCCCCcccCCCCCCccccccCCChhHHHHHHHHhhhc--cc-------ccEEEEcchhhcchHHHHH
Q 036871 167 KNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSD--LR-------SYGVAVNSFYELEPAYADH 237 (383)
Q Consensus 167 ~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~l~~~~~~~ 237 (383)
...+.. +... +.......................... .. ....+... .+.+..
T Consensus 141 -----~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~-----~~~~~~ 202 (401)
T cd03784 141 -----AFPPPL--GRAN------LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGF-----SPAVLP 202 (401)
T ss_pred -----cCCCcc--chHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEec-----CcccCC
Confidence 000000 0000 000000000000000111111111111 00 00111100 111111
Q ss_pred HHHhcCCcEEEeC-cCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCC-HhhHHHHHHHHHhCC
Q 036871 238 YRKALGRRAWHIG-PVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFT-SAQLMEIATGLEASR 315 (383)
Q Consensus 238 ~~~~~~~~v~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~-~~~~~~~~~a~~~~~ 315 (383)
...+++++..++| ++.... .....+.++..|++.. +++|||+|||+.... ......++++++..+
T Consensus 203 ~~~~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~ 269 (401)
T cd03784 203 PPPDWPRFDLVTGYGFRDVP-----------YNGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLG 269 (401)
T ss_pred CCCCccccCcEeCCCCCCCC-----------CCCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcC
Confidence 2244556666665 332211 1122456778888764 679999999998744 466777899999999
Q ss_pred CcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 316 RNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 316 ~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
.++||..+..... . ...++|+++.+|+||.++|+|+++ ||||||+||++||
T Consensus 270 ~~~i~~~g~~~~~----------~-----~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~ea 320 (401)
T cd03784 270 QRAILSLGWGGLG----------A-----EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAA 320 (401)
T ss_pred CeEEEEccCcccc----------c-----cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHH
Confidence 9999998776531 0 113567999999999999999888 9999999999986
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.97 E-value=1.7e-31 Score=255.12 Aligned_cols=329 Identities=29% Similarity=0.431 Sum_probs=183.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcce---EeeeCCCccCCCCCCCc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDV---KTIKFPSVEAGLPEGCE 83 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~~~ 83 (383)
..+++++++|+.||++|+..+|++|++|||+||++++.......... .. ...+.. ...+.....+.++....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SK----SKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-cc----ceeeeeeecChHHhhhhhhhhccchH
Confidence 56888999999999999999999999999999999987654332210 00 000000 00000000011111111
Q ss_pred cccccchhhhHHHHHHHHHHHHHhHHH-HHHH--hhcCCCCEEEecCCCchHHHHHHHhC-CCcEEEecchhhHHHHHhh
Q 036871 84 NLDAITNEVNKELIVKFVGATTKLQEP-LEQL--LRDHKPDCLVADIFFPWATDAAAKFG-IPRLVFHGTSFFSLCASNC 159 (383)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~--l~~~~~D~vi~d~~~~~~~~ia~~l~-iP~v~~~~~~~~~~~~~~~ 159 (383)
... .... .....+...|...... .... ....++|++|+|.+..+...++.... ++...+.+.+......
T Consensus 80 ~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--- 152 (496)
T KOG1192|consen 80 DDD-LDIS---ESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLAL--- 152 (496)
T ss_pred HHH-HHHH---HHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhc---
Confidence 000 0000 1133444455444333 2222 22344999999998666676776664 7777776665543321
Q ss_pred hhhhCCCCCCCCCCCCcccCCCCCCcccCCCCCCcccc-c--------cCC-C--hhHHHHHHHH-----------hhhc
Q 036871 160 LALYEPHKNVSSDSEPFVMPHFPGEIKLTRNQLPDFVK-Q--------DMG-D--NDFSRLLKAI-----------DDSD 216 (383)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~-~--------~~~-~--~~~~~~~~~~-----------~~~~ 216 (383)
+.+....++|............++.... . ... . .......... ....
T Consensus 153 ----------g~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 222 (496)
T KOG1192|consen 153 ----------GLPSPLSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGII 222 (496)
T ss_pred ----------CCcCcccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhh
Confidence 1112222444322210000000000000 0 000 0 0000001111 0122
Q ss_pred ccccEEEEcchhhcchHHHHHH-HHhcCCcEEEeCcCCCCCCCccchhccCCCCCc-ChhhHhhccCCCCCCcEEEEEeC
Q 036871 217 LRSYGVAVNSFYELEPAYADHY-RKALGRRAWHIGPVSLCNRNFEDKALWGKQASI-DEQECLRWLNSKQPNSVVYICFG 294 (383)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~vV~vs~G 294 (383)
.+....++|+...++ + .....++++.|||+....... +. ++.++.++++.. .+++||||||
T Consensus 223 ~~~~~~~ln~~~~~~------~~~~~~~~~v~~IG~l~~~~~~~----------~~~~~~~wl~~~~~~-~~~vvyvSfG 285 (496)
T KOG1192|consen 223 VNASFIFLNSNPLLD------FEPRPLLPKVIPIGPLHVKDSKQ----------KSPLPLEWLDILDES-RHSVVYISFG 285 (496)
T ss_pred hcCeEEEEccCcccC------CCCCCCCCCceEECcEEecCccc----------cccccHHHHHHHhhc-cCCeEEEECC
Confidence 223334444443322 2 233468999999998763221 11 345555555543 3589999999
Q ss_pred Ccc---cCCHhhHHHHHHHHHhC-CCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHh-hcCCCce
Q 036871 295 SIA---NFTSAQLMEIATGLEAS-RRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLI-LDHEAVG 369 (383)
Q Consensus 295 S~~---~~~~~~~~~~~~a~~~~-~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~l-L~~~~~~ 369 (383)
|++ .+++++..+++.+|+++ ++++||++...... . +++++.++ .+.||+..+|+||.+| |.|++++
T Consensus 286 S~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~----~----~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~ 356 (496)
T KOG1192|consen 286 SMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSI----Y----FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVG 356 (496)
T ss_pred cccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcch----h----hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCc
Confidence 999 79999999999999999 78889999876431 0 22232222 3568999999999999 5999999
Q ss_pred eeccccccchhccC
Q 036871 370 GFVTHCGWNSTIEA 383 (383)
Q Consensus 370 ~fItHGG~~s~~Ea 383 (383)
+||||||+|||+||
T Consensus 357 ~FvTHgG~nSt~E~ 370 (496)
T KOG1192|consen 357 GFVTHGGWNSTLES 370 (496)
T ss_pred EEEECCcccHHHHH
Confidence 99999999999996
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.95 E-value=3.8e-28 Score=222.33 Aligned_cols=308 Identities=21% Similarity=0.248 Sum_probs=174.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLD 86 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 86 (383)
++||+++..|+.||++|.++||++|.+|||+|++++++.+.+.++++ |+.|..++..........+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~---- 67 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGK---- 67 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhh----
Confidence 46999999999999999999999999999999999999999988887 67777775431110000000
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhhhCCC
Q 036871 87 AITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPH 166 (383)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
.... ..+............++.+.+.+..+|+++.|.....+ .+++..++|++..............
T Consensus 68 ~~~~----~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------- 134 (406)
T COG1819 68 FAGV----KSFRRLLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG-------- 134 (406)
T ss_pred hhcc----chhHHHhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc--------
Confidence 0000 11111223333345666777888899999999876666 8888999998875544332111100
Q ss_pred CCCCCCCCCcccCCCCCCcccCCCCCCcc-ccccCCChhH-HHHHHHHhhhcc---cccEEEEcchhhcchHHHHHHH--
Q 036871 167 KNVSSDSEPFVMPHFPGEIKLTRNQLPDF-VKQDMGDNDF-SRLLKAIDDSDL---RSYGVAVNSFYELEPAYADHYR-- 239 (383)
Q Consensus 167 ~~~~~~~~~~~~P~~~~~~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~-- 239 (383)
.+..+. ...+.+......++.. .........+ .....+...... +...-+..+-..+.....+...
T Consensus 135 ----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (406)
T COG1819 135 ----LPLPPV---GIAGKLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPP 207 (406)
T ss_pred ----cCcccc---cccccccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCC
Confidence 000000 0000000111101100 0000000000 000000000000 0000000000001100000000
Q ss_pred -HhcCCcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCcE
Q 036871 240 -KALGRRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEASRRNF 318 (383)
Q Consensus 240 -~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~v 318 (383)
...+....++||+... ...+...|+.. ++++||+||||..+. .+++..+++++..++.+|
T Consensus 208 ~~~~p~~~~~~~~~~~~----------------~~~~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~v 268 (406)
T COG1819 208 GDRLPFIGPYIGPLLGE----------------AANELPYWIPA--DRPIVYVSLGTVGNA-VELLAIVLEALADLDVRV 268 (406)
T ss_pred CCCCCCCcCcccccccc----------------ccccCcchhcC--CCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEE
Confidence 1123334455554332 23334444332 478999999999987 888888999999999999
Q ss_pred EEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhhcCCCceeeccccccchhccC
Q 036871 319 IWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 319 iw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
|...+. .+ .... ..+.|+++..|+||.++|+++++ ||||||.||++||
T Consensus 269 i~~~~~-~~----~~~~----------~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~ea 316 (406)
T COG1819 269 IVSLGG-AR----DTLV----------NVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEA 316 (406)
T ss_pred EEeccc-cc----cccc----------cCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHH
Confidence 999866 22 1111 14667999999999999999999 9999999999986
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.62 E-value=5.5e-14 Score=126.72 Aligned_cols=260 Identities=20% Similarity=0.298 Sum_probs=145.1
Q ss_pred cEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccc
Q 036871 8 LHVFFFPFM-AHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLD 86 (383)
Q Consensus 8 ~~il~~~~~-~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 86 (383)
+||++...+ +.||+.-.++|+++| |||+|++++.....+.+.+ .+....++.-. .........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~----~~~~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP----------RFPVREIPGLG----PIQENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc----------ccCEEEccCce----EeccCCccc
Confidence 489988888 889999999999999 6999999998765433322 12233332110 000000111
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhhHHHHHhhhhhhCCC
Q 036871 87 AITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFFSLCASNCLALYEPH 166 (383)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~ 166 (383)
..... .....+..........+.+.+++.+||+||+|. .+.+..+|+..|+|++.+........
T Consensus 65 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~------------ 128 (318)
T PF13528_consen 65 RWKTV---RNNIRWLARLARRIRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH------------ 128 (318)
T ss_pred hHHHH---HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc------------
Confidence 11000 111111122233445566778889999999995 44467888999999998765432110
Q ss_pred CCCCCCCCCcccCCCCCCcccCCCCCCccccccCCChhHHHHHHHHhhh--cccccEEEEcchhhcchHHHHHHHHhcCC
Q 036871 167 KNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDS--DLRSYGVAVNSFYELEPAYADHYRKALGR 244 (383)
Q Consensus 167 ~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 244 (383)
+... +.....+..++.+.... ...+...+.-++. .. .....
T Consensus 129 ------------~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~--------~~~~~ 171 (318)
T PF13528_consen 129 ------------PNFW----------------LPWDQDFGRLIERYIDRYHFPPADRRLALSFY-PP--------LPPFF 171 (318)
T ss_pred ------------ccCC----------------cchhhhHHHHHHHhhhhccCCcccceecCCcc-cc--------ccccc
Confidence 0000 00000122222222221 2233333332222 10 01113
Q ss_pred cEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCC-CcEEEEEe
Q 036871 245 RAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTSAQLMEIATGLEASR-RNFIWVVR 323 (383)
Q Consensus 245 ~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~-~~viw~~~ 323 (383)
++..+||+...... +.- . .+++.|+|+||..... .++++++..+ +++++. +
T Consensus 172 ~~~~~~p~~~~~~~-------------------~~~-~-~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g 223 (318)
T PF13528_consen 172 RVPFVGPIIRPEIR-------------------ELP-P-EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-G 223 (318)
T ss_pred cccccCchhccccc-------------------ccC-C-CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-c
Confidence 45577877543210 010 1 1356899999998543 6677777776 566555 4
Q ss_pred cCCCCCCchhhhccCchhHHHhhCCCCeEecCcc--cHHHhhcCCCceeeccccccchhccC
Q 036871 324 RNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWA--PQVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 324 ~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~--Pq~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
..... + ..+|+.+.++. ...++|+.+++ +|+|||+||+.||
T Consensus 224 ~~~~~----------~-------~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea 266 (318)
T PF13528_consen 224 PNAAD----------P-------RPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEA 266 (318)
T ss_pred CCccc----------c-------cCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHH
Confidence 44311 1 25679988875 56779988888 9999999999986
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.57 E-value=6.7e-13 Score=120.39 Aligned_cols=262 Identities=14% Similarity=0.088 Sum_probs=142.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLD 86 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 86 (383)
|.+|++...++.||+.|-+++|++|.++||+|.+++...-.+. +... ..++.+..++.. ++. .
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~~-----~~g~~~~~~~~~----~l~----~-- 63 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TIIE-----KENIPYYSISSG----KLR----R-- 63 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccCc-----ccCCcEEEEecc----CcC----C--
Confidence 4589999999999999999999999999999999997654321 1000 125666666411 111 0
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc--hHHHHHHHhCCCcEEEecchhhHHHHHhhhhhhC
Q 036871 87 AITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLVFHGTSFFSLCASNCLALYE 164 (383)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~--~~~~ia~~l~iP~v~~~~~~~~~~~~~~~~~~~~ 164 (383)
.... ..+......... .-.....+++.+||+|+...-.. .+...|..+++|.+..-..
T Consensus 64 -~~~~---~~~~~~~~~~~~-~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n--------------- 123 (352)
T PRK12446 64 -YFDL---KNIKDPFLVMKG-VMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD--------------- 123 (352)
T ss_pred -CchH---HHHHHHHHHHHH-HHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC---------------
Confidence 0000 112222222211 12233457889999999876433 3677888899998763211
Q ss_pred CCCCCCCCCCCcccCCCCCCcccCCCCCCccccccCCChhHHHHHHHHhhhcccccEEEEcchhhcchHHHHHHHHhcC-
Q 036871 165 PHKNVSSDSEPFVMPHFPGEIKLTRNQLPDFVKQDMGDNDFSRLLKAIDDSDLRSYGVAVNSFYELEPAYADHYRKALG- 243 (383)
Q Consensus 165 ~~~~~~~~~~~~~~P~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 243 (383)
.+|++. ++++.++.+.. . -++.+ ..+.++
T Consensus 124 ------------~~~g~~-----------------------nr~~~~~a~~v------~-~~f~~--------~~~~~~~ 153 (352)
T PRK12446 124 ------------MTPGLA-----------------------NKIALRFASKI------F-VTFEE--------AAKHLPK 153 (352)
T ss_pred ------------CCccHH-----------------------HHHHHHhhCEE------E-EEccc--------hhhhCCC
Confidence 111221 22222222211 1 11111 011222
Q ss_pred CcEEEeCcCCCCCCCccchhccCCCCCcChhhHhhccCCCCCCcEEEEEeCCcccCCH-hhHHHHHHHHHhCCCcEEEEE
Q 036871 244 RRAWHIGPVSLCNRNFEDKALWGKQASIDEQECLRWLNSKQPNSVVYICFGSIANFTS-AQLMEIATGLEASRRNFIWVV 322 (383)
Q Consensus 244 ~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~-~~~~~~~~a~~~~~~~viw~~ 322 (383)
.+++.+|+-+...-.. ...++..+-+.-.+++++|+|.-||.-.... +.+..++..+.. +.+++|..
T Consensus 154 ~k~~~tG~Pvr~~~~~-----------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~ 221 (352)
T PRK12446 154 EKVIYTGSPVREEVLK-----------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLC 221 (352)
T ss_pred CCeEEECCcCCccccc-----------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEe
Confidence 4678899543321100 0011111112212346799999999975332 222333333322 47888887
Q ss_pred ecCCCCCCchhhhccCchhHHHhhCCCCeEecCcc-c-HHHhhcCCCceeeccccccchhccC
Q 036871 323 RRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWA-P-QVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 323 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~-P-q~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
+.+.. .+.... ..++.+..|+ + -.++++++++ +|||||.+|+.|+
T Consensus 222 G~~~~-----------~~~~~~---~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~ 268 (352)
T PRK12446 222 GKGNL-----------DDSLQN---KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEF 268 (352)
T ss_pred CCchH-----------HHHHhh---cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHH
Confidence 75531 111111 1245555776 4 4578999998 9999999999984
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.52 E-value=9.6e-13 Score=118.49 Aligned_cols=119 Identities=17% Similarity=0.208 Sum_probs=70.8
Q ss_pred EEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcc-eEeeeCCCccCCCCCCCcccc
Q 036871 9 HVFFFPFM-AHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELD-VKTIKFPSVEAGLPEGCENLD 86 (383)
Q Consensus 9 ~il~~~~~-~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ 86 (383)
||++...+ +.||+.|.++|+++|.+ ||+|.++++......+... ++. +..++.... ....+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~~~--~~~~~----- 63 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGIKL--KGEDG----- 63 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCceE--eecCC-----
Confidence 57777777 44999999999999999 9999999876633333322 232 222211000 00001
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEec
Q 036871 87 AITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~ 148 (383)
..... ..+...............+.+++.+||+||+| +.+.+..+|+.++||.+.+..
T Consensus 64 ~~~~~---~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 64 KVNIV---KTLRNKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred cCcHH---HHHHhhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEec
Confidence 00000 11110001101122234567888999999999 566678899999999997654
No 31
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.48 E-value=3.8e-14 Score=111.38 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=79.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccc
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAIT 89 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (383)
|+|.+.|+.||++|+++||++|++|||+|++++++.+++.+++. |++|..++.+ ..... ...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~-------~~~~~--~~~ 62 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGD-------SRLPR--SLE 62 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSC-------GGGGH--HHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCC-------cCcCc--ccc
Confidence 78999999999999999999999999999999999988877665 8888888532 00000 000
Q ss_pred hhhhHHHHHHHHH---HHHHhHHHHHHHhh--------cCCCCEEEecCCCchHHHHHHHhCCCcEEEecchhh
Q 036871 90 NEVNKELIVKFVG---ATTKLQEPLEQLLR--------DHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSFF 152 (383)
Q Consensus 90 ~~~~~~~~~~~~~---~~~~~~~~l~~~l~--------~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~~ 152 (383)
.. .....+.. ......+.+.+... ....|+++.+.....+..+||+++||++.....+..
T Consensus 63 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 63 PL---ANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HH---HHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hh---hhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 00 11111111 11112222222211 135788888887778999999999999998877654
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.13 E-value=1.4e-08 Score=93.05 Aligned_cols=115 Identities=18% Similarity=0.153 Sum_probs=72.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC--ccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG--PYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCEN 84 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 84 (383)
|+||+|...+..||...+..|+++|.++||+|++++..... ..++ ..+++++.++... ...
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~---------~~g~~~~~~~~~~----~~~---- 63 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVP---------KAGIEFHFIPSGG----LRR---- 63 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccc---------cCCCcEEEEeccC----cCC----
Confidence 46899999998899999999999999999999999985521 1111 1256666554211 100
Q ss_pred ccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCC-c-hHHHHHHHhCCCcEE
Q 036871 85 LDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFF-P-WATDAAAKFGIPRLV 145 (383)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~-~-~~~~ia~~l~iP~v~ 145 (383)
.... ..+...... ......+.+.+++.+||+|++.... . .+..++...++|.|.
T Consensus 64 ---~~~~---~~l~~~~~~-~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~ 119 (357)
T PRK00726 64 ---KGSL---ANLKAPFKL-LKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVI 119 (357)
T ss_pred ---CChH---HHHHHHHHH-HHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEE
Confidence 0000 111111111 1223455677888899999988632 2 355567778999875
No 33
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=1.4e-08 Score=91.47 Aligned_cols=115 Identities=18% Similarity=0.174 Sum_probs=72.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCC-eEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGV-KASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDA 87 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 87 (383)
+|++...++.||+.|-++|+++|.++|+ +|.++.+....+..... ..++.++.++.... . ...
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~~~----~-~~~---- 65 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSGGL----R-RKG---- 65 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEecccc----c-ccC----
Confidence 6888888999999999999999999999 57777554443322221 13667777753211 1 000
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc--hHHHHHHHhCCCcEE
Q 036871 88 ITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLV 145 (383)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~--~~~~ia~~l~iP~v~ 145 (383)
.. ..+......+ ......+..|++.+||+|+.-.-+. .+...|..++||.+.
T Consensus 66 --~~---~~~~~~~~~~-~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i 119 (357)
T COG0707 66 --SL---KLLKAPFKLL-KGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVII 119 (357)
T ss_pred --cH---HHHHHHHHHH-HHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEE
Confidence 00 1111111111 1244556788999999999854333 466677789999886
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.07 E-value=4.2e-08 Score=89.71 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=70.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAI 88 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 88 (383)
+|++...+..||......++++|.++||+|++++....... ... ...++++..++... .... ..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~------~~~~~~~~~~~~~~----~~~~----~~- 64 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLV------PKAGIPLHTIPVGG----LRRK----GS- 64 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcc------cccCCceEEEEecC----cCCC----Ch-
Confidence 58899999999999999999999999999999987542111 000 01245666554321 0000 00
Q ss_pred chhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc--hHHHHHHHhCCCcEE
Q 036871 89 TNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLV 145 (383)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~--~~~~ia~~l~iP~v~ 145 (383)
. ..+..+... ......+.+.+++.+||+|++..... .+..++...++|.+.
T Consensus 65 --~---~~~~~~~~~-~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~ 117 (350)
T cd03785 65 --L---KKLKAPFKL-LKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVI 117 (350)
T ss_pred --H---HHHHHHHHH-HHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEE
Confidence 0 111111111 11234566777888999999875332 356667888999875
No 35
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.91 E-value=2.9e-07 Score=80.90 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=56.3
Q ss_pred cEEEEEeCCcccCCHhhHHHHHHHHHhC--CCcEEEEEecCCCCCCchhhhccCchhHHHhh-CCCCeEecCcccHH-Hh
Q 036871 287 SVVYICFGSIANFTSAQLMEIATGLEAS--RRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRM-KGKGLIIRGWAPQV-LI 362 (383)
Q Consensus 287 ~vV~vs~GS~~~~~~~~~~~~~~a~~~~--~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~Pq~-~l 362 (383)
+.|+|+||..-... ....+++++.+. +.++.+.++.... ..+.+++.. ..+|+++..++++. ++
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~----------~~~~l~~~~~~~~~i~~~~~~~~m~~l 238 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP----------NLDELKKFAKEYPNIILFIDVENMAEL 238 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc----------CHHHHHHHHHhCCCEEEEeCHHHHHHH
Confidence 57999999665422 345566777664 4567777766543 122333222 24589999999986 79
Q ss_pred hcCCCceeeccccccchhccC
Q 036871 363 LDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 363 L~~~~~~~fItHGG~~s~~Ea 383 (383)
|..+++ +||+|| +|++|+
T Consensus 239 m~~aDl--~Is~~G-~T~~E~ 256 (279)
T TIGR03590 239 MNEADL--AIGAAG-STSWER 256 (279)
T ss_pred HHHCCE--EEECCc-hHHHHH
Confidence 999999 999999 899885
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.75 E-value=6e-07 Score=77.80 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=70.0
Q ss_pred CCcEEEEEcCC--CcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCC
Q 036871 6 PQLHVFFFPFM--AHGHMIPIVDMAKLFASR--GVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEG 81 (383)
Q Consensus 6 ~~~~il~~~~~--~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 81 (383)
+++||+|++.- +-||+.=...+|.+|++. |.+|++++......-+... .+|+++.+|--.. ...+
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~--------~gVd~V~LPsl~k---~~~G 76 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGP--------AGVDFVKLPSLIK---GDNG 76 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCc--------ccCceEecCceEe---cCCC
Confidence 46699999987 569999999999999998 9999999987764443331 3788888863221 1111
Q ss_pred CccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCch
Q 036871 82 CENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPW 131 (383)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~ 131 (383)
......... + ..+..+.....+....++.+||++|+|.+-++
T Consensus 77 ~~~~~d~~~----~----l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~G 118 (400)
T COG4671 77 EYGLVDLDG----D----LEETKKLRSQLILSTAETFKPDIFIVDKFPFG 118 (400)
T ss_pred ceeeeecCC----C----HHHHHHHHHHHHHHHHHhcCCCEEEEeccccc
Confidence 111111111 1 12222223555666778899999999976553
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.72 E-value=6.6e-07 Score=82.81 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=53.5
Q ss_pred CCcEEEEEeCCcccCCHhhHHHHHHHHHhC-CCcEEEEEecCCCCCCchhhhccCchhHHHhh--CCCCeEecCcccHH-
Q 036871 285 PNSVVYICFGSIANFTSAQLMEIATGLEAS-RRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRM--KGKGLIIRGWAPQV- 360 (383)
Q Consensus 285 ~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~-~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~nv~~~~~~Pq~- 360 (383)
++++|++.-|+... ...+..+++++.+. +.++++..+.+.. +-+.+++.. .++||++..|+++.
T Consensus 201 ~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~~----------~~~~l~~~~~~~~~~v~~~g~~~~~~ 268 (380)
T PRK13609 201 NKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNEA----------LKQSLEDLQETNPDALKVFGYVENID 268 (380)
T ss_pred CCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCHH----------HHHHHHHHHhcCCCcEEEEechhhHH
Confidence 35677777777643 22355667777654 4566655543321 111222211 23579999999874
Q ss_pred HhhcCCCceeeccccccchhccC
Q 036871 361 LILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 361 ~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
+++..+++ +|+.+|..++.||
T Consensus 269 ~l~~~aD~--~v~~~gg~t~~EA 289 (380)
T PRK13609 269 ELFRVTSC--MITKPGGITLSEA 289 (380)
T ss_pred HHHHhccE--EEeCCCchHHHHH
Confidence 79999998 9999988888886
No 38
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.67 E-value=4.3e-06 Score=76.37 Aligned_cols=115 Identities=21% Similarity=0.171 Sum_probs=70.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAI 88 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 88 (383)
||+|++.+..||+.....|+++|.++||+|++++.+.... .... ...++++..++... .... ..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~-----~~~g~~~~~i~~~~--------~~~~-~~ 65 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLV-----PKAGIEFYFIPVGG--------LRRK-GS 65 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hccc-----ccCCCceEEEeccC--------cCCC-Ch
Confidence 8999999999999977899999999999999998643211 0000 01256666554211 0000 00
Q ss_pred chhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc--hHHHHHHHhCCCcEE
Q 036871 89 TNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLV 145 (383)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~--~~~~ia~~l~iP~v~ 145 (383)
. ..+...... ......+.+.+++.+||+|++..... .+..++...++|.+.
T Consensus 66 --~---~~l~~~~~~-~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 66 --F---RLIKTPLKL-LKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred --H---HHHHHHHHH-HHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 0 111111111 11234566778899999999875433 244567778999864
No 39
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.57 E-value=1.3e-05 Score=74.07 Aligned_cols=112 Identities=16% Similarity=0.144 Sum_probs=67.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccc
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDA 87 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 87 (383)
+||+|...++.||+.|- +|+++|.++|++|+++..... .+++. +++- .++.. .++ .
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~---------g~~~-~~~~~----~l~-------v 61 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAE---------GCEV-LYSME----ELS-------V 61 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhC---------cCcc-ccChH----Hhh-------h
Confidence 58999999999999999 999999999999999986532 22322 2211 01000 000 0
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEE-ecCCCch--HHHHHHHhCCCcEEEe
Q 036871 88 ITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLV-ADIFFPW--ATDAAAKFGIPRLVFH 147 (383)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi-~d~~~~~--~~~ia~~l~iP~v~~~ 147 (383)
.... ..+..+... ........+.+++.+||+|| .|.-... ....|+.+|||.+...
T Consensus 62 ~G~~---~~l~~~~~~-~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i 120 (385)
T TIGR00215 62 MGLR---EVLGRLGRL-LKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI 120 (385)
T ss_pred ccHH---HHHHHHHHH-HHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe
Confidence 0000 111211111 12234667778899999998 5643322 2336788999988754
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.33 E-value=3.8e-05 Score=71.07 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=63.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccc
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDA 87 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 87 (383)
+||++...+..||+.|-. ++++|.++++++.++..... .+++... ...+.+..++ .
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~l~----------------~ 57 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC-----ESLFDMEELA----------------V 57 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC-----ccccCHHHhh----------------h
Confidence 489999999999999998 99999999888887764331 1222100 0011111110 0
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCC-CchH--HHHHHHhCCCcEEE
Q 036871 88 ITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIF-FPWA--TDAAAKFGIPRLVF 146 (383)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~-~~~~--~~ia~~l~iP~v~~ 146 (383)
.... +.+..+. ........+.+.+++.+||+|+.-.+ ..+. ...+.+.|||.+..
T Consensus 58 ~g~~---~~~~~~~-~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~ 115 (380)
T PRK00025 58 MGLV---EVLPRLP-RLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHY 115 (380)
T ss_pred ccHH---HHHHHHH-HHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEE
Confidence 0000 1111111 11123556677788999999885322 2222 33467789998764
No 41
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.26 E-value=0.0012 Score=62.77 Aligned_cols=112 Identities=16% Similarity=0.039 Sum_probs=62.1
Q ss_pred CCCcEEEEEcCCC-----cccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCC
Q 036871 5 VPQLHVFFFPFMA-----HGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLP 79 (383)
Q Consensus 5 ~~~~~il~~~~~~-----~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 79 (383)
.+++||+++..+. .|=-+-+..++++|.++||+|++++....... .. .++........ ..+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~--~~--------~g~~v~~~~~~----~~~ 121 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ--EF--------HGAKVIGSWSF----PCP 121 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc--cc--------cCceeeccCCc----CCc
Confidence 3567999885432 24345678999999999999999997543210 00 12222211000 000
Q ss_pred CCCccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc---hHHHHHHHhCCCcEEEe
Q 036871 80 EGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP---WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~---~~~~ia~~l~iP~v~~~ 147 (383)
. ... ... .. .....+...+++.+||+|.+..... .+..+++..++|+|...
T Consensus 122 ~-~~~---~~~----~~---------~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~ 175 (465)
T PLN02871 122 F-YQK---VPL----SL---------ALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSY 175 (465)
T ss_pred c-CCC---cee----ec---------cCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEE
Confidence 0 000 000 00 0112455677788999998654322 34556788999988754
No 42
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.03 E-value=0.00029 Score=65.41 Aligned_cols=85 Identities=13% Similarity=0.271 Sum_probs=51.3
Q ss_pred CCcEEEEEeCCcccCCHhhHHHHHHHHHhC--CCcEEEEEecCCCCCCchhhhccCchhHHHhh-CCCCeEecCcccHH-
Q 036871 285 PNSVVYICFGSIANFTSAQLMEIATGLEAS--RRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRM-KGKGLIIRGWAPQV- 360 (383)
Q Consensus 285 ~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~--~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~Pq~- 360 (383)
++++|++..|+... ...+..+++++.+. +.++++..+.+.. +-+.+++.. ..+++++..|+.+.
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~----------l~~~l~~~~~~~~~v~~~G~~~~~~ 268 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE----------LKRSLTAKFKSNENVLILGYTKHMN 268 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH----------HHHHHHHHhccCCCeEEEeccchHH
Confidence 35688888888752 23445555554332 3455555443321 111222222 24578888998654
Q ss_pred HhhcCCCceeeccccccchhccC
Q 036871 361 LILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 361 ~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
++++.+++ ||+-.|..|+.||
T Consensus 269 ~~~~~aDl--~I~k~gg~tl~EA 289 (391)
T PRK13608 269 EWMASSQL--MITKPGGITISEG 289 (391)
T ss_pred HHHHhhhE--EEeCCchHHHHHH
Confidence 58999999 9998887888886
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=97.93 E-value=0.0044 Score=56.31 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=64.7
Q ss_pred EEEEEcCCC-----cccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCc
Q 036871 9 HVFFFPFMA-----HGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCE 83 (383)
Q Consensus 9 ~il~~~~~~-----~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 83 (383)
||++++... .|+-.-...++++|+++||+|+++++.......... ........... ....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-------~~~~~~~~~~~--------~~~~ 65 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKE-------VIGVVVYGRPI--------DEVL 65 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccc-------cccceeecccc--------cccc
Confidence 466665432 578888999999999999999999986543221111 00111111000 0000
Q ss_pred cccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCch---HHHHHHHhCCCcEEEe
Q 036871 84 NLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPW---ATDAAAKFGIPRLVFH 147 (383)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~---~~~ia~~l~iP~v~~~ 147 (383)
. ..... ................+.+.+++.++|+|++...... ....++..++|++...
T Consensus 66 ~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (359)
T cd03823 66 R-SALPR----DLFHLSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTL 127 (359)
T ss_pred C-CCchh----hhhHHHhccCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEE
Confidence 0 00000 1111111112234566777888899999998775332 2344677899988754
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.93 E-value=0.0052 Score=55.95 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=25.9
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 18 HGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 18 ~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
.|+...+..|+++|+++||+|++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~ 41 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGP 41 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCc
Confidence 6899999999999999999999999865
No 45
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.83 E-value=0.0079 Score=53.95 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=70.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAI 88 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 88 (383)
||.+--.- .-|+..+..+.++|.++||+|.+.+-+.. .+....+ -+++++..+... + . .
T Consensus 2 kIwiDi~~-p~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~-----~yg~~y~~iG~~--------g-~---~- 60 (335)
T PF04007_consen 2 KIWIDITH-PAHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLD-----LYGIDYIVIGKH--------G-D---S- 60 (335)
T ss_pred eEEEECCC-chHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHH-----HcCCCeEEEcCC--------C-C---C-
Confidence 44443333 34999999999999999999988775432 2233222 137888777311 0 1 1
Q ss_pred chhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecch
Q 036871 89 TNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTS 150 (383)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~ 150 (383)
....+.... ...-.+.+.+++.+||++|+- ....+..+|..+|+|.|.+.-+.
T Consensus 61 -------~~~Kl~~~~-~R~~~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e 113 (335)
T PF04007_consen 61 -------LYGKLLESI-ERQYKLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTE 113 (335)
T ss_pred -------HHHHHHHHH-HHHHHHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCc
Confidence 011111111 123455566677899999974 34567789999999999987653
No 46
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.81 E-value=0.012 Score=53.80 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=30.9
Q ss_pred EEEEEcCCC----cccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 9 HVFFFPFMA----HGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 9 ~il~~~~~~----~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
||++++... .|+-.-...++++|+++||+|++++....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 466666543 48999999999999999999999997554
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.70 E-value=0.0041 Score=52.92 Aligned_cols=93 Identities=20% Similarity=0.248 Sum_probs=64.0
Q ss_pred cEEEEEcCC----CcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCc
Q 036871 8 LHVFFFPFM----AHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCE 83 (383)
Q Consensus 8 ~~il~~~~~----~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 83 (383)
+||+|.+-+ +-||+.=++.||++|.+||..+++++..+.++.+-+..+ ++.+. . .+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~-------~f~~~------------~-~~ 60 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYE-------GFKVL------------E-GR 60 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhh-------hccce------------e-ee
Confidence 478887765 459999999999999999999999998764432222100 01000 0 00
Q ss_pred cccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCch---HHHHHHHhCCCcEEEe
Q 036871 84 NLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPW---ATDAAAKFGIPRLVFH 147 (383)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~---~~~ia~~l~iP~v~~~ 147 (383)
. . ..+++.++|++|.|++..- ...+.++.+.+.+.+-
T Consensus 61 ~----------~-----------------n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fD 100 (318)
T COG3980 61 G----------N-----------------NLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFD 100 (318)
T ss_pred c----------c-----------------cccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEec
Confidence 0 0 1567889999999998763 5667778999988764
No 48
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.68 E-value=0.029 Score=51.12 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=30.2
Q ss_pred EEEEEc----CCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 9 HVFFFP----FMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 9 ~il~~~----~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
||++++ ....|+..-...++++|+++||+|+++++...
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 355553 33568999999999999999999999987553
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.68 E-value=0.011 Score=54.73 Aligned_cols=107 Identities=20% Similarity=0.265 Sum_probs=58.4
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccchhhhHHHH
Q 036871 18 HGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEVNKELI 97 (383)
Q Consensus 18 ~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (383)
.|.-..+..|+++|+++||+|++++........... ....++.+..++.... ... ... ...
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~------~~~-----~~~---~~~ 81 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV-----ELAPGVRVVRVPAGPA------EYL-----PKE---ELW 81 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc-----ccccceEEEecccccc------cCC-----Chh---hcc
Confidence 578889999999999999999999864432211100 0012455444432110 000 000 000
Q ss_pred HHHHHHHHHhHHHHHHHhhcC--CCCEEEecCCCc--hHHHHHHHhCCCcEEEe
Q 036871 98 VKFVGATTKLQEPLEQLLRDH--KPDCLVADIFFP--WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 98 ~~~~~~~~~~~~~l~~~l~~~--~~D~vi~d~~~~--~~~~ia~~l~iP~v~~~ 147 (383)
..+. .....+...+++. ++|+|++..... .+..+++.+++|+|...
T Consensus 82 ~~~~----~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~ 131 (398)
T cd03800 82 PYLD----EFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTF 131 (398)
T ss_pred hhHH----HHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEe
Confidence 0111 1222333444454 899999876433 35667788999988643
No 50
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=97.68 E-value=0.002 Score=59.69 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=27.7
Q ss_pred CCCeEecCcccH-HHhhcCCCceeeccccccchhccC
Q 036871 348 GKGLIIRGWAPQ-VLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 348 ~~nv~~~~~~Pq-~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
..++++..|+++ .+++..+++ +|+.+|.+|+.||
T Consensus 264 ~~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EA 298 (382)
T PLN02605 264 KIPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEA 298 (382)
T ss_pred cCCeEEEeccccHHHHHHhCCE--EEECCCcchHHHH
Confidence 356888889874 458888888 9999998999986
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.62 E-value=0.026 Score=51.04 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=58.9
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccchhhhHHHH
Q 036871 18 HGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEVNKELI 97 (383)
Q Consensus 18 ~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (383)
.|+..-+..++++|.+.||+|++++........... ....... .. .....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~---------~~~~~~~-------~~-----~~~~~--------- 63 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE---------VGGIVVV-------RP-----PPLLR--------- 63 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee---------ecCccee-------cC-----Ccccc---------
Confidence 688999999999999999999999986543221111 0000000 00 00000
Q ss_pred HHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHH--HHHHHhCCCcEEEec
Q 036871 98 VKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWAT--DAAAKFGIPRLVFHG 148 (383)
Q Consensus 98 ~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~--~ia~~l~iP~v~~~~ 148 (383)
.............+...+++.++|+|++........ ..+...++|++....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 116 (374)
T cd03801 64 VRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVH 116 (374)
T ss_pred cchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEec
Confidence 000011111234556667778999999887666433 467778999887554
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.61 E-value=0.018 Score=52.83 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=31.6
Q ss_pred cEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 8 LHVFFFPFM-AHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 8 ~~il~~~~~-~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+||++++.| ..|.-.-...+++.|+++||+|++++...
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 377777776 55777889999999999999999998753
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.47 E-value=0.046 Score=49.35 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=64.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCcc-chhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPY-VSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDA 87 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 87 (383)
||++++....|+...+..++++|.++||+|++++....... .. ..++.+..++... ..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---------~~--- 59 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE---------ALGVKVIPIPLDR---------RG--- 59 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc---------cCCceEEeccccc---------cc---
Confidence 57878777888999999999999999999999998665432 11 1255555443211 00
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCch--HHHHHHHhCCCcEEEe
Q 036871 88 ITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPRLVFH 147 (383)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~--~~~ia~~l~iP~v~~~ 147 (383)
.... ..+. ....+...+++.++|+|++...... +..++...+.|.+...
T Consensus 60 ~~~~---~~~~--------~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~ 110 (359)
T cd03808 60 INPF---KDLK--------ALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYT 110 (359)
T ss_pred cChH---hHHH--------HHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEE
Confidence 0000 1111 1224556677789999998765442 3444443666655543
No 54
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=97.45 E-value=0.07 Score=49.72 Aligned_cols=111 Identities=15% Similarity=0.134 Sum_probs=60.8
Q ss_pred EEEEEcCC----CcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcc
Q 036871 9 HVFFFPFM----AHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCEN 84 (383)
Q Consensus 9 ~il~~~~~----~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 84 (383)
||++++.. ..|--.-...++++|+++||+|+++++......-... ...++.+..+|.... ...
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~------~~~~i~v~~~p~~~~----~~~--- 67 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRY------LTNGLKVYYLPFVVF----YNQ--- 67 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCccc------ccCceeEEEecceec----cCC---
Confidence 35554442 3355577899999999999999999975321110000 012455555542210 000
Q ss_pred ccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc----hHHHHHHHhCCCcEEE
Q 036871 85 LDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP----WATDAAAKFGIPRLVF 146 (383)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~----~~~~ia~~l~iP~v~~ 146 (383)
.... ... .....+...+++.++|+|-+..... .+..+++..++|.|..
T Consensus 68 -~~~~-----~~~--------~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 68 -STLP-----TFF--------GTFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred -cccc-----chh--------hhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 0000 000 0123455566778999999775332 2455678889998763
No 55
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.29 E-value=1.1e-05 Score=65.28 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=52.1
Q ss_pred EEEEEeCCcccCCH-hhHHHHHHHHHh--CCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCccc-HHHhh
Q 036871 288 VVYICFGSIANFTS-AQLMEIATGLEA--SRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAP-QVLIL 363 (383)
Q Consensus 288 vV~vs~GS~~~~~~-~~~~~~~~a~~~--~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~P-q~~lL 363 (383)
+|+|+.||.-...- +.+..++..+.. ...+++|..+.... ..... .+. ....|+.+.+|++ ..+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~----~~~~~----~~~--~~~~~v~~~~~~~~m~~~m 70 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY----EELKI----KVE--NFNPNVKVFGFVDNMAELM 70 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC----HHHCC----CHC--CTTCCCEEECSSSSHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH----HHHHH----HHh--ccCCcEEEEechhhHHHHH
Confidence 58999998853211 112222222222 24788888877632 11110 100 0126799999999 88899
Q ss_pred cCCCceeeccccccchhccC
Q 036871 364 DHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 364 ~~~~~~~fItHGG~~s~~Ea 383 (383)
..+++ +|||||.||+.|+
T Consensus 71 ~~aDl--vIs~aG~~Ti~E~ 88 (167)
T PF04101_consen 71 AAADL--VISHAGAGTIAEA 88 (167)
T ss_dssp HHHSE--EEECS-CHHHHHH
T ss_pred HHcCE--EEeCCCccHHHHH
Confidence 99998 9999999999985
No 56
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.22 E-value=0.034 Score=50.14 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=60.5
Q ss_pred cEEEEEcCC--------CcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCC
Q 036871 8 LHVFFFPFM--------AHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLP 79 (383)
Q Consensus 8 ~~il~~~~~--------~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 79 (383)
+||++++.. ..|--.-...|+++|.++||+|++++....... ......... ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~--------------~~~~~~~~~----~~~ 62 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTA--------------APLVPVVPE----PLR 62 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcc--------------cceeeccCC----Ccc
Confidence 378887653 234456689999999999999999997543211 011111000 000
Q ss_pred CCCccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEE
Q 036871 80 EGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~ 146 (383)
... . .. ..........+.+.+++.++|+|.+........ ++...++|.|..
T Consensus 63 ~~~------~-----~~----~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~~~v~~ 113 (335)
T cd03802 63 LDA------P-----GR----DRAEAEALALAERALAAGDFDIVHNHSLHLPLP-FARPLPVPVVTT 113 (335)
T ss_pred ccc------c-----hh----hHhhHHHHHHHHHHHhcCCCCEEEecCcccchh-hhcccCCCEEEE
Confidence 000 0 00 000111234566777888999998876555444 778889997764
No 57
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.16 E-value=0.18 Score=45.77 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.7
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 17 AHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
..|.-.-...++++|.++||+|++++.....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 5578888899999999999999999986543
No 58
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.12 E-value=0.2 Score=45.43 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=27.1
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 17 AHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
..|+..-+..++++|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 3688888999999999999999999986643
No 59
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.09 E-value=0.0063 Score=47.28 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=63.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAI 88 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 88 (383)
||+++......| ...+++.|.++||+|++++.....+.... ..++++..++.+ . ..
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~--------~~~i~~~~~~~~---------~---k~- 56 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI--------IEGIKVIRLPSP---------R---KS- 56 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH--------hCCeEEEEecCC---------C---Cc-
Confidence 577777777666 45789999999999999999554322211 125666655211 0 00
Q ss_pred chhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc-h--HHHHHHHhC-CCcEEE
Q 036871 89 TNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP-W--ATDAAAKFG-IPRLVF 146 (383)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~-~--~~~ia~~l~-iP~v~~ 146 (383)
.. ..+. +. .+...+++.+||+|.+..... + +..++...+ +|.|..
T Consensus 57 -~~---~~~~--------~~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 57 -PL---NYIK--------YF-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred -cH---HHHH--------HH-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 00 1111 12 678889999999998777554 2 344556778 888754
No 60
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.00 E-value=0.001 Score=47.73 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=45.9
Q ss_pred hhhHhhccCCCCCCcEEEEEeCCcccC---CH--hhHHHHHHHHHhCCCcEEEEEecCCC
Q 036871 273 EQECLRWLNSKQPNSVVYICFGSIANF---TS--AQLMEIATGLEASRRNFIWVVRRNKN 327 (383)
Q Consensus 273 ~~~~~~~l~~~~~~~vV~vs~GS~~~~---~~--~~~~~~~~a~~~~~~~viw~~~~~~~ 327 (383)
+..+.+|+...+.++.|.||+||.... .. ..+..++++++.++..++.++.....
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 456678998888899999999999853 32 57899999999999999999987654
No 61
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.00 E-value=0.26 Score=44.92 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=31.5
Q ss_pred cEEEEEcCC-C-cccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 8 LHVFFFPFM-A-HGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 8 ~~il~~~~~-~-~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+||++++.. . .|+-.-...++++|.++||+|++++..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~ 39 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQE 39 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEee
Confidence 478888765 3 688899999999999999999999864
No 62
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=96.93 E-value=0.13 Score=46.08 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=31.0
Q ss_pred EEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 9 HVFFFPFM--AHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 9 ~il~~~~~--~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
||++++.. ..|+-..+..++++|.+.||+|++++....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 45655555 578888899999999999999999997654
No 63
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.92 E-value=0.024 Score=53.20 Aligned_cols=122 Identities=11% Similarity=-0.002 Sum_probs=66.8
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
+..+|.+++..-.|+-.=+..+|++|+++||+|++++........+.. .+.++.+..++.. . ...
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~------~~~~v~~~~~~~~-------~--~~~ 66 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL------SNPNITIHPLPPP-------P--QRL 66 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh------cCCCEEEEECCCC-------c--ccc
Confidence 345788888876666555677999999999999999875422111101 1236666655311 0 000
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecC-CCc----hHHHHHHHhCCCcEEEe
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADI-FFP----WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~-~~~----~~~~ia~~l~iP~v~~~ 147 (383)
.... ..+..+..........+...++..++|+|++.. ... .+..++...++|.|..+
T Consensus 67 ~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~ 128 (415)
T cd03816 67 NKLP-----FLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDW 128 (415)
T ss_pred ccch-----HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEc
Confidence 0000 122222222222333444456667899999754 221 23444566799987643
No 64
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.90 E-value=0.025 Score=52.63 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=65.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAI 88 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 88 (383)
||||+....+|. +..||++|+++||+|+++|........ + +++.+.+...... .. ...
T Consensus 1 ~il~~~~~~p~~---~~~la~~L~~~G~~v~~~~~~~~~~~~----------~-~v~~~~~~~~~~~----~~----~~~ 58 (396)
T cd03818 1 RILFVHQNFPGQ---FRHLAPALAAQGHEVVFLTEPNAAPPP----------G-GVRVVRYRPPRGP----TS----GTH 58 (396)
T ss_pred CEEEECCCCchh---HHHHHHHHHHCCCEEEEEecCCCCCCC----------C-CeeEEEecCCCCC----CC----CCC
Confidence 577776666655 568999999999999999987643211 1 4555555322110 00 011
Q ss_pred chhhhHHHHHHHHHHHHHhHHHHHHH-hhcCCCCEEEecCCCchHHHHHHHh-CCCcEEEecc
Q 036871 89 TNEVNKELIVKFVGATTKLQEPLEQL-LRDHKPDCLVADIFFPWATDAAAKF-GIPRLVFHGT 149 (383)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~D~vi~d~~~~~~~~ia~~l-~iP~v~~~~~ 149 (383)
... ............+...+... .+..+||+|++......+..+.+.+ ++|.|.++..
T Consensus 59 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~~ 118 (396)
T cd03818 59 PYL---REFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYFEF 118 (396)
T ss_pred ccc---hhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEEee
Confidence 100 11111111122233333333 3446899999997665666666664 5898886543
No 65
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.81 E-value=0.0074 Score=54.84 Aligned_cols=85 Identities=14% Similarity=0.219 Sum_probs=48.4
Q ss_pred CCcEEEEEeCCcccCC-H---hhHHHHHHHHHhC-CCcEEEEEecCCCCCCchhhhccCchhHHHhhCC-CCeEecCccc
Q 036871 285 PNSVVYICFGSIANFT-S---AQLMEIATGLEAS-RRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKG-KGLIIRGWAP 358 (383)
Q Consensus 285 ~~~vV~vs~GS~~~~~-~---~~~~~~~~a~~~~-~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~-~nv~~~~~~P 358 (383)
.++.|+|++=...+.. + +.+..+++++.+. +.++||.+...... -+.+.+.... +|+++.+-++
T Consensus 179 ~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~----------~~~i~~~l~~~~~v~~~~~l~ 248 (346)
T PF02350_consen 179 PKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRG----------SDIIIEKLKKYDNVRLIEPLG 248 (346)
T ss_dssp TSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHH----------HHHHHHHHTT-TTEEEE----
T ss_pred CCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchH----------HHHHHHHhcccCCEEEECCCC
Confidence 5789999995555544 3 3455556777666 67899998744321 0122222211 4898887776
Q ss_pred H---HHhhcCCCceeeccccccchhc-cC
Q 036871 359 Q---VLILDHEAVGGFVTHCGWNSTI-EA 383 (383)
Q Consensus 359 q---~~lL~~~~~~~fItHGG~~s~~-Ea 383 (383)
+ ..+|.++++ +||..| |++ ||
T Consensus 249 ~~~~l~ll~~a~~--vvgdSs--GI~eEa 273 (346)
T PF02350_consen 249 YEEYLSLLKNADL--VVGDSS--GIQEEA 273 (346)
T ss_dssp HHHHHHHHHHESE--EEESSH--HHHHHG
T ss_pred HHHHHHHHhcceE--EEEcCc--cHHHHH
Confidence 5 457788888 999999 666 65
No 66
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.76 E-value=0.0037 Score=49.48 Aligned_cols=95 Identities=21% Similarity=0.267 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccchhhhHHHHHHHH
Q 036871 22 IPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEVNKELIVKFV 101 (383)
Q Consensus 22 ~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (383)
.-+..|+++|+++||+|++++.......-+.. ..++.+..++.+... . ..... ..
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~---~~~~~---~~----- 59 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLPLPRRP-------W---PLRLL---RF----- 59 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE--S-SS-------S---GGGHC---CH-----
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEeccCCccc-------h---hhhhH---HH-----
Confidence 34678999999999999999976554321111 125666666533211 0 10000 11
Q ss_pred HHHHHhHHHHHHHh--hcCCCCEEEecCCCc-hHHHHHH-HhCCCcEEEe
Q 036871 102 GATTKLQEPLEQLL--RDHKPDCLVADIFFP-WATDAAA-KFGIPRLVFH 147 (383)
Q Consensus 102 ~~~~~~~~~l~~~l--~~~~~D~vi~d~~~~-~~~~ia~-~l~iP~v~~~ 147 (383)
...+.+.+ ++.++|+|.+..... ....+++ ..++|+|...
T Consensus 60 ------~~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 60 ------LRRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp ------HHHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred ------HHHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 12334444 778999999777433 3344445 7899998754
No 67
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=96.75 E-value=0.11 Score=47.58 Aligned_cols=90 Identities=17% Similarity=0.211 Sum_probs=51.0
Q ss_pred CCcEEEEEeCCcccC-CHhhHHHHHHHHHhCCC-cEEEEEecCCCCCCchhhhccCchhHHHhhC-CCCeEecCcccHH-
Q 036871 285 PNSVVYICFGSIANF-TSAQLMEIATGLEASRR-NFIWVVRRNKNDGGEEEKEAWLPEGFEKRMK-GKGLIIRGWAPQV- 360 (383)
Q Consensus 285 ~~~vV~vs~GS~~~~-~~~~~~~~~~a~~~~~~-~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~Pq~- 360 (383)
++++|++.+|..... ..+.+..+++|++.+.. ++.+........ .+. +-+...+... .+|+++....++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~--~~~----l~~~~~~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRT--RPR----IREAGLEFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCCh--HHH----HHHHHHhhccCCCCEEEECCcCHHH
Confidence 356788888877643 45667788888877633 244444333210 011 1111111111 4678887766655
Q ss_pred --HhhcCCCceeeccccccchhccC
Q 036871 361 --LILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 361 --~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
.++..+++ ||+..| |.+.||
T Consensus 271 ~~~l~~~ad~--~v~~Sg-gi~~Ea 292 (363)
T cd03786 271 FLLLLKNADL--VLTDSG-GIQEEA 292 (363)
T ss_pred HHHHHHcCcE--EEEcCc-cHHhhh
Confidence 35667777 999998 555454
No 68
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=96.72 E-value=0.24 Score=45.49 Aligned_cols=89 Identities=13% Similarity=0.214 Sum_probs=53.0
Q ss_pred CcEEEEEeCCcc--c-CCHhhHHHHHHHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhC-CCCeEecCccc---
Q 036871 286 NSVVYICFGSIA--N-FTSAQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMK-GKGLIIRGWAP--- 358 (383)
Q Consensus 286 ~~vV~vs~GS~~--~-~~~~~~~~~~~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~~~~~~P--- 358 (383)
++.|+|++=-.. . .+.+.+..+++++...+.++++.+...... +..+. +.+++... .+|+++.+-++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~--~~~i~----~~i~~~~~~~~~v~l~~~l~~~~ 274 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAG--SRIIN----EAIEEYVNEHPNFRLFKSLGQER 274 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCC--chHHH----HHHHHHhcCCCCEEEECCCChHH
Confidence 468888885433 2 445778899999988876666665433211 01111 11222111 46788877655
Q ss_pred HHHhhcCCCceeeccccccchhccC
Q 036871 359 QVLILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 359 q~~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
...++.++++ +||.++.+- .||
T Consensus 275 ~l~Ll~~a~~--vitdSSggi-~EA 296 (365)
T TIGR03568 275 YLSLLKNADA--VIGNSSSGI-IEA 296 (365)
T ss_pred HHHHHHhCCE--EEEcChhHH-Hhh
Confidence 4457788888 999884432 554
No 69
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=96.66 E-value=0.45 Score=42.54 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=28.2
Q ss_pred EEEEcCC---CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 10 VFFFPFM---AHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 10 il~~~~~---~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
|+++... ..|...-+..++++|+++||+|++++....
T Consensus 2 I~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 2 ILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred eEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4444433 356667788999999999999999998654
No 70
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=96.62 E-value=0.58 Score=43.31 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=28.7
Q ss_pred cEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 8 LHVFFFPFM--AHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 8 ~~il~~~~~--~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+||+++... ..|=-.-+..||++|+++||+|+++|...
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 378877544 23444567899999999999999999743
No 71
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.53 E-value=0.61 Score=42.44 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=28.0
Q ss_pred EEEEEcC-----CCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 9 HVFFFPF-----MAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 9 ~il~~~~-----~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
||+++.. ...|=-.-...++++|.++||+|++++....
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 4566622 2344456688999999999999999997654
No 72
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=96.52 E-value=0.31 Score=45.28 Aligned_cols=30 Identities=23% Similarity=-0.056 Sum_probs=22.5
Q ss_pred CCCEEEecCCCchHHHHHHHhCCCcEEEecc
Q 036871 119 KPDCLVADIFFPWATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 119 ~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~ 149 (383)
++|+||+-.-+. ....|...|+|++.+.+.
T Consensus 93 ~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~ 122 (396)
T TIGR03492 93 KGDLIVAVGDIV-PLLFAWLSGKPYAFVGTA 122 (396)
T ss_pred cCCEEEEECcHH-HHHHHHHcCCCceEEEee
Confidence 899998554333 777888899999986654
No 73
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=96.40 E-value=0.01 Score=45.43 Aligned_cols=86 Identities=15% Similarity=0.180 Sum_probs=52.2
Q ss_pred CcEEEEEeCCcccCC---HhhHHHHHHHHHhCCC-cEEEEEecCCCCCCchhhhccCchhHHHhhCCCC--eEecCcccH
Q 036871 286 NSVVYICFGSIANFT---SAQLMEIATGLEASRR-NFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKG--LIIRGWAPQ 359 (383)
Q Consensus 286 ~~vV~vs~GS~~~~~---~~~~~~~~~a~~~~~~-~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~n--v~~~~~~Pq 359 (383)
...+||+-||....+ .-.-.++.+.+.+.+. +.|..++.+... .++..+......+ +...+|-|-
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~---------~~d~~~~~~k~~gl~id~y~f~ps 73 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF---------FGDPIDLIRKNGGLTIDGYDFSPS 73 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC---------CCCHHHhhcccCCeEEEEEecCcc
Confidence 357999999987411 1112445666677765 667777776432 2222111111223 334567774
Q ss_pred -HHhhcCCCceeeccccccchhcc
Q 036871 360 -VLILDHEAVGGFVTHCGWNSTIE 382 (383)
Q Consensus 360 -~~lL~~~~~~~fItHGG~~s~~E 382 (383)
.+....+++ +|+|+|.||++|
T Consensus 74 l~e~I~~Adl--VIsHAGaGS~le 95 (170)
T KOG3349|consen 74 LTEDIRSADL--VISHAGAGSCLE 95 (170)
T ss_pred HHHHHhhccE--EEecCCcchHHH
Confidence 556666777 999999999987
No 74
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=96.29 E-value=0.83 Score=41.37 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=27.6
Q ss_pred EEEEEcCCC-cccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFFFPFMA-HGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~~~~~~-~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
||++++.-. .+.-.-+..+++.|.++||+|++++...
T Consensus 1 ki~~~~~~~~~~~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 1 KIAYLVKEFPRLSETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred CEEEECCCCCCcchHHHHHHHHHHHhCCCeEEEEEecC
Confidence 466555442 2345668999999999999999999754
No 75
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.08 E-value=0.68 Score=42.05 Aligned_cols=26 Identities=4% Similarity=0.201 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHh
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFAS 33 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~ 33 (383)
|++|++++.-..|++. -..|.++|.+
T Consensus 1 ~~~i~i~aGE~SGD~~-ga~l~~~l~~ 26 (347)
T PRK14089 1 MMKILVSALEPSANLH-LKELLKNLPK 26 (347)
T ss_pred CcEEEEEeccccHHHH-HHHHHHHHhc
Confidence 4589988888999988 5677888877
No 76
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.90 E-value=0.15 Score=47.71 Aligned_cols=38 Identities=26% Similarity=0.394 Sum_probs=27.4
Q ss_pred cEEEEEcC---CCc-ccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 8 LHVFFFPF---MAH-GHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 8 ~~il~~~~---~~~-gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+||++++. |.. |=-.-+..|+++|.++||+|+++|+..
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCC
Confidence 47888873 321 111236799999999999999999764
No 77
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=95.90 E-value=1.3 Score=40.12 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=30.0
Q ss_pred EEEEEcCC----CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 9 HVFFFPFM----AHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 9 ~il~~~~~----~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
||+++... ..|...-...++++|.++||+|++++....
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 35544433 458899999999999999999999997654
No 78
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=95.77 E-value=1 Score=42.44 Aligned_cols=99 Identities=14% Similarity=0.223 Sum_probs=57.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCe--EEEEeC-CCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVK--ASVITT-PANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~--Vt~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
+++.+-..+.|.+.-...|+++|.+++++ |.+.+. +.-.+..++. .+.++....+|.+
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~------~~~~~~~~~~P~d------------- 111 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQAL------FGDDVEHRYLPYD------------- 111 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHh------cCCCceEEEecCC-------------
Confidence 55556666779999999999999998765 322221 1111111111 0112333333211
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc--hHHHHHHHhCCCcEEEe
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~--~~~~ia~~l~iP~v~~~ 147 (383)
....+..++++.+||+++...... .....++..|+|.+.+.
T Consensus 112 ---------------------~~~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 112 ---------------------LPGAVRRFLRFWRPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred ---------------------cHHHHHHHHHhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 012455668888999998653333 34455678899988753
No 79
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=95.69 E-value=0.91 Score=41.58 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=28.2
Q ss_pred cEEEEEcCC--Cccc-HHHHHHHHHHHHhC--CCeEEEEeCCC
Q 036871 8 LHVFFFPFM--AHGH-MIPIVDMAKLFASR--GVKASVITTPA 45 (383)
Q Consensus 8 ~~il~~~~~--~~gH-~~p~~~la~~L~~r--GH~Vt~~~~~~ 45 (383)
+||+++... ..|= -.-+..++++|.++ ||+|++++...
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~ 43 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRND 43 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCC
Confidence 477777553 2233 46678999999999 89999988754
No 80
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.67 E-value=0.19 Score=40.28 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=52.7
Q ss_pred hCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccchhhhHHHHHHHHHHHHHhHHHHH
Q 036871 33 SRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEVNKELIVKFVGATTKLQEPLE 112 (383)
Q Consensus 33 ~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 112 (383)
++||+|++++........ . ||+...+..+.. ..+...... ..+..-....+...+.+.
T Consensus 1 q~gh~v~fl~~~~~~~~~--~---------GV~~~~y~~~~~--~~~~~~~~~---------~~~e~~~~rg~av~~a~~ 58 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--P---------GVRVVRYRPPRG--PTPGTHPYV---------RDFEAAVLRGQAVARAAR 58 (171)
T ss_pred CCCCEEEEEecCCCCCCC--C---------CcEEEEeCCCCC--CCCCCCccc---------ccHHHHHHHHHHHHHHHH
Confidence 589999999965543221 1 677766632111 011111000 111111222233344444
Q ss_pred HHhhc-CCCCEEEecCCCchHHHHHHHh-CCCcEEEec
Q 036871 113 QLLRD-HKPDCLVADIFFPWATDAAAKF-GIPRLVFHG 148 (383)
Q Consensus 113 ~~l~~-~~~D~vi~d~~~~~~~~ia~~l-~iP~v~~~~ 148 (383)
++.++ ..||+|+...-.-.+.-+-+.+ +.|.+.++=
T Consensus 59 ~L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 59 QLRAQGFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHHcCCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 44444 6789999998777788888888 899988753
No 81
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=95.44 E-value=2 Score=39.16 Aligned_cols=38 Identities=37% Similarity=0.615 Sum_probs=26.7
Q ss_pred HHHHHhhcCCCCEEEecCCCc--hHHHHHHHhCCCcEEEe
Q 036871 110 PLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~d~~~~--~~~~ia~~l~iP~v~~~ 147 (383)
.+...+++.++|+|.+..... .+..+++.+|+|++...
T Consensus 73 ~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~ 112 (367)
T cd05844 73 QLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTF 112 (367)
T ss_pred HHHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEEEE
Confidence 444467788999998764332 35667788999988754
No 82
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=95.18 E-value=2.3 Score=38.42 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=28.9
Q ss_pred EEEEEcCC---CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFFFPFM---AHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~~~~~---~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
||+|++.. ..|--.-...|+++|.++||+|++++...
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 40 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAA 40 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeec
Confidence 46666544 34667789999999999999999998654
No 83
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=95.17 E-value=2.7 Score=39.09 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=24.6
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 17 AHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
..|--.-...|+++|+++||+|+++++..
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~ 47 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRAT 47 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEeccc
Confidence 34666778999999999999999999753
No 84
>PLN02846 digalactosyldiacylglycerol synthase
Probab=94.88 E-value=0.23 Score=46.87 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCC----cccHHHHHHHHHHHHhCC-CeEEEEeCCC
Q 036871 6 PQLHVFFFPFMA----HGHMIPIVDMAKLFASRG-VKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~----~gH~~p~~~la~~L~~rG-H~Vt~~~~~~ 45 (383)
+++||+|++-.. .|=......++..|+++| |+|+++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 357999998764 366566788888999999 8999999853
No 85
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=94.80 E-value=0.69 Score=46.51 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=24.0
Q ss_pred CCCCEEEecCCCc--hHHHHHHHhCCCcEEEe
Q 036871 118 HKPDCLVADIFFP--WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 118 ~~~D~vi~d~~~~--~~~~ia~~l~iP~v~~~ 147 (383)
.+||+|.+..... .|..+++++|||.+...
T Consensus 384 ~~pDlIHahy~d~glva~lla~~lgVP~v~t~ 415 (784)
T TIGR02470 384 GKPDLIIGNYSDGNLVASLLARKLGVTQCTIA 415 (784)
T ss_pred CCCCEEEECCCchHHHHHHHHHhcCCCEEEEC
Confidence 5799999887554 47888999999988654
No 86
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.37 E-value=0.76 Score=40.17 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=69.2
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccchhhhH
Q 036871 15 FMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEVNK 94 (383)
Q Consensus 15 ~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (383)
.+-.-|+..+..+..+|.++||+|.+.+- ++.. +.+..+ -+|+.+.++.-. +... ...
T Consensus 7 I~n~~hvhfFk~lI~elekkG~ev~iT~r-d~~~-v~~LLd-----~ygf~~~~Igk~--------g~~t---l~~---- 64 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKKGHEVLITCR-DFGV-VTELLD-----LYGFPYKSIGKH--------GGVT---LKE---- 64 (346)
T ss_pred cCCcchhhHHHHHHHHHHhCCeEEEEEEe-ecCc-HHHHHH-----HhCCCeEeeccc--------CCcc---HHH----
Confidence 34446889999999999999999865553 3322 222222 137777777311 1111 110
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecchh
Q 036871 95 ELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTSF 151 (383)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~~ 151 (383)
+.... ......+-+.+.+.+||+.+. ....-+..+|-.+|+|.|.+.-...
T Consensus 65 Kl~~~-----~eR~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 65 KLLES-----AERVYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred HHHHH-----HHHHHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCChh
Confidence 11111 112345667788899999999 5667788899999999999876543
No 87
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.22 E-value=0.18 Score=41.64 Aligned_cols=42 Identities=12% Similarity=0.103 Sum_probs=30.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYV 50 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~ 50 (383)
+|||+.-=-+. +-.-+..|.++|.+.||+|+++++...+...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 36666655554 4445899999998889999999998876543
No 88
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=94.07 E-value=0.37 Score=43.75 Aligned_cols=98 Identities=19% Similarity=0.157 Sum_probs=57.4
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccchhhhHHH
Q 036871 17 AHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEVNKEL 96 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (383)
..|--.-...++++|+++||+|++++..... ..... ..++++..++... . ... ..
T Consensus 9 ~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~---~~~~~-----~~~~~~~~~~~~~--------~------~~~---~~ 63 (355)
T cd03819 9 SGGVERGTLELARALVERGHRSLVASAGGRL---VAELE-----AEGSRHIKLPFIS--------K------NPL---RI 63 (355)
T ss_pred cCcHHHHHHHHHHHHHHcCCEEEEEcCCCch---HHHHH-----hcCCeEEEccccc--------c------chh---hh
Confidence 3566677899999999999999999874321 11110 1245444442110 0 000 11
Q ss_pred HHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc--hHHHHHHHhCCCcEEEe
Q 036871 97 IVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~--~~~~ia~~l~iP~v~~~ 147 (383)
+. ....+...+++.++|+|++..... .+..+++..++|++...
T Consensus 64 ~~--------~~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~ 108 (355)
T cd03819 64 LL--------NVARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTV 108 (355)
T ss_pred HH--------HHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEe
Confidence 10 123455667788999999876443 34555677899987644
No 89
>PRK00654 glgA glycogen synthase; Provisional
Probab=93.87 E-value=0.89 Score=43.39 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=29.5
Q ss_pred cEEEEEcCC------CcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 8 LHVFFFPFM------AHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 8 ~~il~~~~~------~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+||++++.. ..|--.-...|+++|+++||+|+++++.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 367777654 3455666789999999999999999974
No 90
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=93.81 E-value=7.1 Score=38.09 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=29.0
Q ss_pred hHHHHHHHhhcCCCCEEE-ecCCCc--hHHHHHHHhCC--CcEEEec
Q 036871 107 LQEPLEQLLRDHKPDCLV-ADIFFP--WATDAAAKFGI--PRLVFHG 148 (383)
Q Consensus 107 ~~~~l~~~l~~~~~D~vi-~d~~~~--~~~~ia~~l~i--P~v~~~~ 148 (383)
..+.+.+.+++.+||++| .|+-.+ -..-.+++.|+ |.+.+.+
T Consensus 298 ~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs 344 (608)
T PRK01021 298 RYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC 344 (608)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC
Confidence 355666677778999987 687444 34556677886 9887653
No 91
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=93.77 E-value=0.65 Score=43.95 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhCCC--eEEEEeCCCCCccc-hhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccchhhhHHHH
Q 036871 21 MIPIVDMAKLFASRGV--KASVITTPANGPYV-SKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEVNKELI 97 (383)
Q Consensus 21 ~~p~~~la~~L~~rGH--~Vt~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (383)
-.-+..|+++|+++|| +|+++|.......+ ............++++..++... .... ..
T Consensus 29 ~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~------~~~~---~~--------- 90 (439)
T TIGR02472 29 TKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGP------RRYL---RK--------- 90 (439)
T ss_pred chHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCC------CCCc---Ch---------
Confidence 3457899999999998 99999953211000 00000000001255555553210 0000 00
Q ss_pred HHHHHHHHHhHHHHHHHhhc--CCCCEEEecCCCc--hHHHHHHHhCCCcEEEe
Q 036871 98 VKFVGATTKLQEPLEQLLRD--HKPDCLVADIFFP--WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 98 ~~~~~~~~~~~~~l~~~l~~--~~~D~vi~d~~~~--~~~~ia~~l~iP~v~~~ 147 (383)
..+......+...+...+++ .+||+|-+..... .+..+++.+++|+|...
T Consensus 91 ~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 91 ELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred hhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 00111112233444455554 3799999886433 35566778899987643
No 92
>PLN00142 sucrose synthase
Probab=93.63 E-value=0.6 Score=47.00 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=25.7
Q ss_pred CCCCEEEecCCCc--hHHHHHHHhCCCcEEEecc
Q 036871 118 HKPDCLVADIFFP--WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 118 ~~~D~vi~d~~~~--~~~~ia~~l~iP~v~~~~~ 149 (383)
.+||+|.+.+... .|..+++++|||.|....+
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 5799999987555 4788899999999976543
No 93
>PLN02275 transferase, transferring glycosyl groups
Probab=93.50 E-value=3.3 Score=38.13 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCC-eEEEEeCCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGV-KASVITTPAN 46 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH-~Vt~~~~~~~ 46 (383)
+-++.++..+-.|.-.-|..++..|+++|| +|++++....
T Consensus 4 ~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~ 44 (371)
T PLN02275 4 RGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGS 44 (371)
T ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 345666666777777788999999999986 7999986543
No 94
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=93.44 E-value=1 Score=46.61 Aligned_cols=40 Identities=15% Similarity=0.331 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCC---------------cccHHHHHHHHHHHHhCC--CeEEEEeCCC
Q 036871 6 PQLHVFFFPFMA---------------HGHMIPIVDMAKLFASRG--VKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~---------------~gH~~p~~~la~~L~~rG--H~Vt~~~~~~ 45 (383)
+++.|++++..+ .|+..-...||++|+++| |+|.++|-..
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~ 224 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQV 224 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 567788776432 346667899999999998 8999999643
No 95
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.34 E-value=0.66 Score=38.74 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=24.4
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 17 AHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
..|+-.....++++|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999988
No 96
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=92.83 E-value=1.9 Score=41.17 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.0
Q ss_pred cEEEEEcCC------CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 8 LHVFFFPFM------AHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 8 ~~il~~~~~------~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+||++++.- ..|=-.-+-.|+++|+++||+|.++++..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 377777754 23444557899999999999999999744
No 97
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.80 E-value=0.59 Score=37.32 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=24.0
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 17 AHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
..|=-.-+..|+++|+++||+|++++....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 456677899999999999999999987543
No 98
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=92.72 E-value=1.7 Score=39.46 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=30.9
Q ss_pred EEEEEcC--CCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 9 HVFFFPF--MAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 9 ~il~~~~--~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
||+++.. ...|.-.-+..++++|.++||+|++++.....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 4555554 36688888999999999999999999976543
No 99
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=92.50 E-value=2.6 Score=40.24 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 21 MIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 21 ~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
-.-...|+++|+++||+|+++++..
T Consensus 19 ~~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 19 GDVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3446789999999999999999643
No 100
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.40 E-value=1.1 Score=40.70 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=67.1
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCC-CeEEEEeCCCCC--ccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRG-VKASVITTPANG--PYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGC 82 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rG-H~Vt~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 82 (383)
+|+||+++ ++++=.+.=|..|.+++.+.+ -+..++.+.... +........ .++.. +..+-......
T Consensus 2 ~~~Kv~~I-~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~-----~~i~~-----pdy~L~i~~~~ 70 (383)
T COG0381 2 KMLKVLTI-FGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLEL-----FGIRK-----PDYDLNIMKPG 70 (383)
T ss_pred CceEEEEE-EecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHH-----hCCCC-----CCcchhccccC
Confidence 45566554 567778888999999999997 666555555544 222222110 12211 10000000001
Q ss_pred ccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecC--CCc-hHHHHHHHhCCCcEEEe
Q 036871 83 ENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADI--FFP-WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~--~~~-~~~~ia~~l~iP~v~~~ 147 (383)
..+.+....+...+.+.+++.+||+|++.. ... ++..+|.+.+||+..+-
T Consensus 71 ---------------~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvE 123 (383)
T COG0381 71 ---------------QTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVE 123 (383)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEe
Confidence 112233334566778888899999998655 333 45778888999988764
No 101
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=92.38 E-value=0.53 Score=36.39 Aligned_cols=49 Identities=8% Similarity=0.017 Sum_probs=41.3
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhh
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKS 53 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (383)
+|+.+|++.+.+.-+|-.-..-++..|.++|++|+++....-.+.+...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 4677999999999999999999999999999999999876654444443
No 102
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=92.27 E-value=9.3 Score=35.25 Aligned_cols=99 Identities=16% Similarity=0.346 Sum_probs=64.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEe-CCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVIT-TPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
..+.+-.-+.|-++-...|.++|.++ ++.+++.| ++.-.+.+.+.. +..+....+|++
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D------------- 110 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLD------------- 110 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcC-------------
Confidence 45566666889999999999999999 88887777 333333333321 222333333321
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEE-ecC-CCchHHHHHHHhCCCcEEEe
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLV-ADI-FFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi-~d~-~~~~~~~ia~~l~iP~v~~~ 147 (383)
....+..+++..+||++| ++. +.++-..-+++.|+|.+.+.
T Consensus 111 ---------------------~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 111 ---------------------LPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred ---------------------chHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEe
Confidence 112556788889999876 554 33356666788999988754
No 103
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=91.86 E-value=4.3 Score=37.29 Aligned_cols=110 Identities=15% Similarity=0.177 Sum_probs=57.4
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccc
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAIT 89 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (383)
|++++.-..|+.. -..|.++|.+++-++.+..-... ..++. |++.. + +. ....
T Consensus 1 I~i~AGE~SGD~~-ga~Li~~Lk~~~p~~~~~GvGG~--~M~~~---------G~~~l-~-----------d~---~~ls 53 (373)
T PF02684_consen 1 IFISAGEASGDLH-GARLIRALKARDPDIEFYGVGGP--RMQAA---------GVESL-F-----------DM---EELS 53 (373)
T ss_pred CEEEeeCccHHHH-HHHHHHHHHhhCCCcEEEEEech--HHHhC---------CCcee-c-----------ch---HHhh
Confidence 3555666777777 67788888888766665553221 12222 33211 0 01 1111
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEE-ecCCCc--hHHHHHHHhCCC--cEEEe
Q 036871 90 NEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLV-ADIFFP--WATDAAAKFGIP--RLVFH 147 (383)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi-~d~~~~--~~~~ia~~l~iP--~v~~~ 147 (383)
.+.+.+.+..+.. .......+.+.+.+.+||++| +|+-.+ -..-.+++.|+| .+.+.
T Consensus 54 vmG~~Evl~~l~~-~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI 115 (373)
T PF02684_consen 54 VMGFVEVLKKLPK-LKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYI 115 (373)
T ss_pred hccHHHHHHHHHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEE
Confidence 1100122222211 122355666777889999877 887443 344456678888 66544
No 104
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=91.70 E-value=9.8 Score=34.30 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=24.1
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 18 HGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 18 ~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
.|--.-+..|+++|+++||+|++++....
T Consensus 15 gG~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 15 TGIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred CcHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 34555689999999999999999998654
No 105
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=91.14 E-value=0.46 Score=35.93 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=42.4
Q ss_pred EEEEeCCccc-CCHhhHH-HHHHHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCc--cc-HHHhh
Q 036871 289 VYICFGSIAN-FTSAQLM-EIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGW--AP-QVLIL 363 (383)
Q Consensus 289 V~vs~GS~~~-~~~~~~~-~~~~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~--~P-q~~lL 363 (383)
|+|+-||... ...-.++ ++.+-.+.-..++|+.++.+.. .|= ++.++..| .+ -+.+.
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~----------kpv--------agl~v~~F~~~~kiQsli 63 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI----------KPV--------AGLRVYGFDKEEKIQSLI 63 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc----------ccc--------cccEEEeechHHHHHHHh
Confidence 7899999953 1111111 1222222234588999987653 331 12344444 33 44566
Q ss_pred cCCCceeeccccccchhcc
Q 036871 364 DHEAVGGFVTHCGWNSTIE 382 (383)
Q Consensus 364 ~~~~~~~fItHGG~~s~~E 382 (383)
.++++ +|+|+|-||++.
T Consensus 64 ~darI--VISHaG~GSIL~ 80 (161)
T COG5017 64 HDARI--VISHAGEGSILL 80 (161)
T ss_pred hcceE--EEeccCcchHHH
Confidence 66676 999999999864
No 106
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=90.58 E-value=15 Score=34.48 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHhC--CCeEEEEeCCCCC
Q 036871 19 GHMIPIVDMAKLFASR--GVKASVITTPANG 47 (383)
Q Consensus 19 gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~ 47 (383)
|==.-+...+.+|+++ ||+|+++|+....
T Consensus 15 g~ervl~~a~~~l~~~~~~~~v~i~t~~~~~ 45 (419)
T cd03806 15 GGERVLWCAVRALQKRYPNNIVVIYTGDLDA 45 (419)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 4556788999999998 8999999997665
No 107
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=89.87 E-value=7.8 Score=31.18 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=24.8
Q ss_pred hhcCCCCEEEecCCCch--HHHHHHHh------CCCcEEEec
Q 036871 115 LRDHKPDCLVADIFFPW--ATDAAAKF------GIPRLVFHG 148 (383)
Q Consensus 115 l~~~~~D~vi~d~~~~~--~~~ia~~l------~iP~v~~~~ 148 (383)
+.+.+||+||+..-..| ...+|..+ |.+.|.+-+
T Consensus 88 l~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 88 LRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 35567999998886664 56667778 888887644
No 108
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=89.73 E-value=0.53 Score=35.25 Aligned_cols=39 Identities=8% Similarity=-0.087 Sum_probs=27.4
Q ss_pred cEEEEEcCCCcc---cHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 8 LHVFFFPFMAHG---HMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 8 ~~il~~~~~~~g---H~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
+||+|+.-|..+ .-....+|+.+-++|||+|.+++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 478888887644 334678999999999999999998665
No 109
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=89.66 E-value=3 Score=35.68 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 036871 20 HMIPIVDMAKLFASRGVKASVITTPANGPYV 50 (383)
Q Consensus 20 H~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~ 50 (383)
|---+.+|+++|. .+++|++++++..+.-+
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 4445888999999 99999999998875543
No 110
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=89.57 E-value=2.5 Score=38.86 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=28.1
Q ss_pred EEEEEcC--CCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFFFPF--MAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~~~~--~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
||+++.. ...|=..-+..+++.|.+.||+|++++...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 3555533 355667778899999999999999998744
No 111
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=89.48 E-value=3.7 Score=35.34 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=58.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLD 86 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 86 (383)
+.+|+++...+-| ..|++.|.++|+.|++.+...... ... .++....-
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~---------~~~~v~~G----------------- 49 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PAD---------LPGPVRVG----------------- 49 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-ccc---------CCceEEEC-----------------
Confidence 4578887666655 478999999999987766544322 110 01111110
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEE--ecCCCc----hHHHHHHHhCCCcEEEec
Q 036871 87 AITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLV--ADIFFP----WATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi--~d~~~~----~~~~ia~~l~iP~v~~~~ 148 (383)
.... ...+.+++++.+.++|| +++|.. -+..+++.+|||++.+--
T Consensus 50 ~l~~-----------------~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 50 GFGG-----------------AEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred CCCC-----------------HHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 1100 23566788899999988 444433 256778899999999753
No 112
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.43 E-value=2.4 Score=33.47 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=36.0
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
+.++||++.-.|+.|-..-...+++.|.++|++|-=+.+++.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV 44 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV 44 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee
Confidence 457799999999999999999999999999999965555553
No 113
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=87.88 E-value=5.6 Score=34.42 Aligned_cols=38 Identities=32% Similarity=0.419 Sum_probs=27.5
Q ss_pred HHHHHhhcCCCCEEEecCCCc------hHHHHHHHhCCCcEEEe
Q 036871 110 PLEQLLRDHKPDCLVADIFFP------WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~d~~~~------~~~~ia~~l~iP~v~~~ 147 (383)
.+.+++++.++|+||--.+-+ -+..+++.+|||++.+-
T Consensus 56 ~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 56 ELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred HHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 466788889999887433322 24667889999999974
No 114
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=87.64 E-value=21 Score=32.27 Aligned_cols=65 Identities=6% Similarity=0.160 Sum_probs=41.0
Q ss_pred EEEEeCCcccCCHhhHHHHHHHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHH---hhcC
Q 036871 289 VYICFGSIANFTSAQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVL---ILDH 365 (383)
Q Consensus 289 V~vs~GS~~~~~~~~~~~~~~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~---lL~~ 365 (383)
.++..|++.. .+....+++|++.++.++++. +.+.. .+.+++ ...+||.+..++|+.+ ++..
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~iv-G~g~~-----------~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ 261 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVI-GDGPE-----------LDRLRA-KAGPNVTFLGRVSDEELRDLYAR 261 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEE-ECChh-----------HHHHHh-hcCCCEEEecCCCHHHHHHHHHh
Confidence 3455666652 345677788888888665544 33321 112222 3567899999999854 6778
Q ss_pred CCc
Q 036871 366 EAV 368 (383)
Q Consensus 366 ~~~ 368 (383)
+++
T Consensus 262 ad~ 264 (351)
T cd03804 262 ARA 264 (351)
T ss_pred CCE
Confidence 888
No 115
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=87.22 E-value=9.6 Score=34.13 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=26.7
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 15 FMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 15 ~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+...|.-.....|+++|.+.||+|.+++...
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~ 39 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHVVISLTD 39 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEEEEecCc
Confidence 3457899999999999999999999998654
No 116
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=86.65 E-value=4.4 Score=35.53 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
+...|.+.=.|+.|--.-.-+|+.+|.++||.|-++.-++..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 345778888899999999999999999999999999876643
No 117
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=86.59 E-value=5.8 Score=36.38 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=61.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASR-GVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDA 87 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~r-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 87 (383)
||++ -.++..|+.-+..+.++|.++ +.++.++.+..-.+.+....+ ..++.. .++. .+.. . .
T Consensus 2 ~i~~-~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~-----~~~i~~-~~~~-----~~~~---~--~ 64 (365)
T TIGR00236 2 KVSI-VLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLD-----LFHLPP-DYDL-----NIMS---P--G 64 (365)
T ss_pred eEEE-EEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHH-----hcCCCC-Ceee-----ecCC---C--C
Confidence 5654 457778999999999999987 555555554433222222211 012221 0100 0100 0 0
Q ss_pred cchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecC--CC-chHHHHHHHhCCCcEEE
Q 036871 88 ITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADI--FF-PWATDAAAKFGIPRLVF 146 (383)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~--~~-~~~~~ia~~l~iP~v~~ 146 (383)
. .. ..........+.+.+++.+||+|++.. .. .++..+|..+|||++.+
T Consensus 65 ~------~~----~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 65 Q------TL----GEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred C------CH----HHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 0 00 111112235677788889999999764 22 24777889999998764
No 118
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=86.24 E-value=8.1 Score=32.07 Aligned_cols=107 Identities=9% Similarity=0.120 Sum_probs=56.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRG--VKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCEN 84 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rG--H~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 84 (383)
|+||+++.++..+-+ .++.+++.+.+ ++|.++.+......+..... ..++.+..++.. .. .
T Consensus 1 m~ki~vl~sg~gs~~---~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~-----~~gIp~~~~~~~----~~----~- 63 (200)
T PRK05647 1 MKRIVVLASGNGSNL---QAIIDACAAGQLPAEIVAVISDRPDAYGLERAE-----AAGIPTFVLDHK----DF----P- 63 (200)
T ss_pred CceEEEEEcCCChhH---HHHHHHHHcCCCCcEEEEEEecCccchHHHHHH-----HcCCCEEEECcc----cc----C-
Confidence 478999999874444 46667777764 77877655432222222211 225665554211 00 0
Q ss_pred ccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc-hHHHHHHHhCCCcEEEec
Q 036871 85 LDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~-~~~~ia~~l~iP~v~~~~ 148 (383)
. .+...+.+.+.+++.++|++|+-.+.. ....+-+......+-+++
T Consensus 64 --~----------------~~~~~~~~~~~l~~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHp 110 (200)
T PRK05647 64 --S----------------REAFDAALVEALDAYQPDLVVLAGFMRILGPTFVSAYEGRIINIHP 110 (200)
T ss_pred --c----------------hhHhHHHHHHHHHHhCcCEEEhHHhhhhCCHHHHhhccCCEEEEeC
Confidence 0 001234666778889999998754432 333344444444454443
No 119
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=85.78 E-value=1.3 Score=33.84 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=34.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchh
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSK 52 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (383)
+||++...|+.+=.. ...+.++|.++|++|.++.++.-.+.+..
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 489999999877777 99999999999999999998765444443
No 120
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=85.51 E-value=0.91 Score=41.19 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=29.5
Q ss_pred EEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 9 HVFFFPFM--AHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 9 ~il~~~~~--~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
||+++... ..|+......|+++|.++||+|++++..
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 35655553 5788999999999999999999999854
No 121
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=85.33 E-value=1.6 Score=35.86 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=33.6
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
++..||++.-+|+.|=+.-...++++|.++||+|.++.++.-
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA 44 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTV 44 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhH
Confidence 356689998888755554468999999999999999998764
No 122
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=84.89 E-value=1.5 Score=32.86 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=33.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
||++.+.+...|.....-++..|.++|++|+++....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~ 37 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDV 37 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCC
Confidence 5889999999999999999999999999998877543
No 123
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=84.32 E-value=7.5 Score=35.49 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=40.9
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccchh
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANGPYVSK 52 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~~~ 52 (383)
.+.|||++-...-|++.-...+.++|.++ +.+|++++.+.+.+.++.
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 52 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE 52 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc
Confidence 46689999999999999999999999998 899999999877655443
No 124
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=84.16 E-value=8.6 Score=35.05 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=66.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLD 86 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 86 (383)
|||++-..+-|++.-...+.++|.++ +.+|++++.+...+.++.. ..++-... ++ .. ..
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~-~~-----~~---~~-- 62 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIP-MP-----LG---HG-- 62 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEe-cc-----cc---cc--
Confidence 79999999999999999999999996 8999999987766555433 12322111 11 00 00
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEE
Q 036871 87 AITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLV 145 (383)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~ 145 (383)
. ..+. ....+...|++.+||++|.=.-..-...++...|+|...
T Consensus 63 -~------~~~~--------~~~~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 63 -A------LEIG--------ERRRLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -h------hhhH--------HHHHHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 0000 012344567788999998554444455667777887554
No 125
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=84.10 E-value=13 Score=30.25 Aligned_cols=107 Identities=13% Similarity=0.138 Sum_probs=57.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCe--EEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVK--ASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~--Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
+||+|+.++.. ..+..+.++|.+++|+ +..+.+.......+.... ..++....+... .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~-----~~~~~~~~~~~~--------~---- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAI-----KNGIPAQVADEK--------N---- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHH-----HTTHHEEEHHGG--------G----
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEeccccccccccccc-----cCCCCEEecccc--------C----
Confidence 48998877765 4567778899999998 444444333222111100 012222222100 0
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc-hHHHHHHHhCCCcEEEecc
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~-~~~~ia~~l~iP~v~~~~~ 149 (383)
.. ......+++.+.+++.++|++|+-.+.. ....+-+......+-++++
T Consensus 61 --~~-------------~~~~~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 --FQ-------------PRSENDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp --SS-------------SHHHHHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred --CC-------------chHhhhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 00 0011355677888999999998766543 4455557777777776654
No 126
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=83.77 E-value=28 Score=30.13 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYV 50 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~ 50 (383)
++|||+.-=-+. |-.-+.+|+++|.+.| +|+++++...+.-.
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 46 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGM 46 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCC
Confidence 458887654433 2244889999999988 79999988765443
No 127
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=83.30 E-value=4.4 Score=34.91 Aligned_cols=39 Identities=31% Similarity=0.511 Sum_probs=29.5
Q ss_pred HHHHHhhcCCCCEEE--ecCCCc----hHHHHHHHhCCCcEEEec
Q 036871 110 PLEQLLRDHKPDCLV--ADIFFP----WATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi--~d~~~~----~~~~ia~~l~iP~v~~~~ 148 (383)
.+.+++++.++|+|| +++|.. -+..+++.+|||++.+--
T Consensus 57 ~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 57 GLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred HHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 566788889999998 444433 256778899999999753
No 128
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=82.15 E-value=2.9 Score=32.99 Aligned_cols=36 Identities=25% Similarity=0.169 Sum_probs=28.9
Q ss_pred EEEEEeCCcccCCHhhHHHHHHHHHhCCCcEEEEEe
Q 036871 288 VVYICFGSIANFTSAQLMEIATGLEASRRNFIWVVR 323 (383)
Q Consensus 288 vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~viw~~~ 323 (383)
.+|+|+||......+.++..++++.+.+.--+++.+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~S 38 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAVS 38 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 699999999998888899999999988653344443
No 129
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=81.64 E-value=43 Score=30.71 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
++||++++.-..|++. --.|.++|.+|=-+|.++.-
T Consensus 1 ~~ki~i~AGE~SGDll-Ga~LikaLk~~~~~~efvGv 36 (381)
T COG0763 1 MLKIALSAGEASGDLL-GAGLIKALKARYPDVEFVGV 36 (381)
T ss_pred CceEEEEecccchhhH-HHHHHHHHHhhCCCeEEEEe
Confidence 4689999999999987 66788888887226666654
No 130
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=81.16 E-value=4.7 Score=36.17 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=38.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccchh
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANGPYVSK 52 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~~~ 52 (383)
|||++-...-|++.-...+.++|.++ +.+|++++.+.+.+.++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~ 46 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL 46 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc
Confidence 68999999999999999999999998 999999999877655543
No 131
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=80.36 E-value=30 Score=28.23 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeee
Q 036871 22 IPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIK 70 (383)
Q Consensus 22 ~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 70 (383)
...-.|+..|+++||+||+.+.....+.-... =.|++...++
T Consensus 21 T~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~-------y~gv~l~~i~ 62 (185)
T PF09314_consen 21 TFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE-------YNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCCCCcc-------cCCeEEEEeC
Confidence 34567888888999999999886554322221 1267777775
No 132
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=80.31 E-value=17 Score=33.38 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=24.1
Q ss_pred EEEEEcCCCcccH-----HHHHHHHHHHHhCCCeEEEEeCC
Q 036871 9 HVFFFPFMAHGHM-----IPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 9 ~il~~~~~~~gH~-----~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
||++++.....+. .-...|+++|.++ |+|++++..
T Consensus 2 kI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~ 41 (388)
T TIGR02149 2 KVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFG 41 (388)
T ss_pred eeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCC
Confidence 6777765443322 4477999999987 777777754
No 133
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=79.43 E-value=2 Score=34.99 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=35.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccch
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVS 51 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~ 51 (383)
|+||++.-.++.|=.. ...+.+.|.++|++|.++.++.-.+.+.
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 4689999888866665 8999999999999999999877554443
No 134
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=79.19 E-value=6.1 Score=27.11 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=31.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
.-++++..+...|..=+..+|+.|+++|+.|...-
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 57888999999999999999999999999987544
No 135
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=78.36 E-value=16 Score=33.08 Aligned_cols=102 Identities=19% Similarity=0.172 Sum_probs=65.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccchhhHhhhhhcCCCcc-eEeeeCCCccCCCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANGPYVSKSVERANEMGIELD-VKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~ 85 (383)
|||++-..+-|++.-...+.++|.+. +.+|++++.+...+.++.. ..++ +..++ ...+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~-------~~~~---- 61 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMP-------LGHG---- 61 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecC-------Cccc----
Confidence 68999999999999999999999997 8999999987654444332 1222 11111 0000
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEE
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLV 145 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~ 145 (383)
. . ... ....+...+++.+||++|.-....-...++...++|...
T Consensus 62 -~-~-----~~~---------~~~~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 62 -A-L-----ELT---------ERRRLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred -c-h-----hhh---------HHHHHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0 0 000 012344567788999999765444455566677887543
No 136
>PLN02949 transferase, transferring glycosyl groups
Probab=78.34 E-value=64 Score=30.81 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCC---cccHHHHHHHHHHHHhCCC--eEEEEeCCCC
Q 036871 5 VPQLHVFFFPFMA---HGHMIPIVDMAKLFASRGV--KASVITTPAN 46 (383)
Q Consensus 5 ~~~~~il~~~~~~---~gH~~p~~~la~~L~~rGH--~Vt~~~~~~~ 46 (383)
..+.+|+|+-... .|==.-+...+.+|+++|| +|+++|+...
T Consensus 31 ~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d 77 (463)
T PLN02949 31 SRKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHD 77 (463)
T ss_pred CCCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCC
Confidence 3466777654332 2556789999999999999 7888886543
No 137
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=78.28 E-value=21 Score=32.43 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=67.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccchhhHhhhhhcCCCcc-eEeeeCCCccCCCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANGPYVSKSVERANEMGIELD-VKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~ 85 (383)
|||++-...-|++.-...+.++|.++ +.+|++++.+.+.+.++.. ..++ +..++. ...
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~---------~~~-- 61 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDR---------KKA-- 61 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeCh---------hhh--
Confidence 68999999999999999999999997 8999999998765544432 1232 222210 000
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEE
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~ 146 (383)
. . . ...+. .. -.+...|++.+||++|.=........++...+.|..+-
T Consensus 62 -~-~-----~-~~~~~----~~-~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 62 -K-A-----G-ERKLA----NQ-FHLIKVLRANRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred -c-c-----h-HHHHH----HH-HHHHHHHHhCCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 0 0 0 00000 01 12334567789999996544445677888889986553
No 138
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=78.01 E-value=14 Score=31.91 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=27.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYV 50 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~ 50 (383)
|||+.-=-+. |-.-+.+|+++|.+. |+|+++++...+.-.
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~ 41 (250)
T PRK00346 2 RILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGA 41 (250)
T ss_pred eEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCC
Confidence 4444433222 233488999999998 799999998765543
No 139
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=77.73 E-value=2.1 Score=39.82 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=25.6
Q ss_pred EcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 13 FPFM-AHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 13 ~~~~-~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
+|+| -.|+-.=+..++++|+++ |+|++++-...
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~ 41 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDD 41 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCC
Confidence 3555 457777789999999776 99999997654
No 140
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=77.47 E-value=13 Score=30.66 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=29.8
Q ss_pred EEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 036871 11 FFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGP 48 (383)
Q Consensus 11 l~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~ 48 (383)
+|+=..+.|-..-..+||..++.+|..|.+++.+.++.
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred EEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 33434477999999999999999999999999988864
No 141
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=77.45 E-value=16 Score=32.76 Aligned_cols=43 Identities=7% Similarity=0.096 Sum_probs=37.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccc
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANGPYV 50 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~ 50 (383)
+||+++-...-|++.-...+.+.|.++ +.+|++++.+.+.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 389999999999999999999999997 9999999987655443
No 142
>PRK05973 replicative DNA helicase; Provisional
Probab=77.44 E-value=21 Score=30.53 Aligned_cols=47 Identities=15% Similarity=0.039 Sum_probs=38.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhh
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKS 53 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (383)
.--+++.--|+.|=....+.++.+.+++|+.|.+++.+...+.+...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R 110 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDR 110 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Confidence 44567777788999999999999998999999999988776555443
No 143
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=77.11 E-value=8.6 Score=35.42 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLD 86 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 86 (383)
..=||+-=-|+-|--.-+++++..|+++| .|.+++.++...+++-..++. ++....+ .
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL-----~~~~~~l----------------~ 150 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRL-----GLPTNNL----------------Y 150 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHh-----CCCccce----------------E
Confidence 34566777788899899999999999999 999999998776665543332 2211100 0
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc-h--------------------HHHHHHHhCCCcEE
Q 036871 87 AITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP-W--------------------ATDAAAKFGIPRLV 145 (383)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~-~--------------------~~~ia~~l~iP~v~ 145 (383)
-. .+...+.+.+.+++.+||++|.|+.-. + -..+|+..||+.+.
T Consensus 151 l~---------------aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fi 215 (456)
T COG1066 151 LL---------------AETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFI 215 (456)
T ss_pred Ee---------------hhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 00 011244677778889999999998532 1 12357778888777
Q ss_pred Eec
Q 036871 146 FHG 148 (383)
Q Consensus 146 ~~~ 148 (383)
+..
T Consensus 216 VGH 218 (456)
T COG1066 216 VGH 218 (456)
T ss_pred EEE
Confidence 654
No 144
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=76.85 E-value=37 Score=32.13 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEe
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~ 147 (383)
.++++.+++.++|++|.... +..+|+++|+|++.+.
T Consensus 367 ~e~~~~i~~~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 367 WHLRSLLFTEPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhhcCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 35667778889999998875 6889999999998754
No 145
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=76.73 E-value=4.9 Score=29.99 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=33.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
|+++...+..-|-.-+..++..|.++||+|.++-...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 7899999999999999999999999999999885543
No 146
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=76.53 E-value=91 Score=31.58 Aligned_cols=118 Identities=14% Similarity=0.002 Sum_probs=64.7
Q ss_pred EEEEEcCC--CcccHHHHHHHHHHHHhCCC--------------eEEEEeCC------CCCccchhhHhhhhhcCCCcce
Q 036871 9 HVFFFPFM--AHGHMIPIVDMAKLFASRGV--------------KASVITTP------ANGPYVSKSVERANEMGIELDV 66 (383)
Q Consensus 9 ~il~~~~~--~~gH~~p~~~la~~L~~rGH--------------~Vt~~~~~------~~~~~~~~~~~~~~~~~~~v~~ 66 (383)
||+++... ..|==.-++.|+.+|.++|. +|++++.. .+...++. .|+..
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~---------~Gv~v 353 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLAD---------AGIPV 353 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHh---------CCCeE
Confidence 67766444 45777889999999999843 56665321 12222222 26776
Q ss_pred EeeeCCCccCCCCCCCccccccchhhhHHHHHHH----HHHHHHhHHHHHHHhhcCCCCEEEecCCCc--hHHHHHHHhC
Q 036871 67 KTIKFPSVEAGLPEGCENLDAITNEVNKELIVKF----VGATTKLQEPLEQLLRDHKPDCLVADIFFP--WATDAAAKFG 140 (383)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~--~~~~ia~~l~ 140 (383)
..++.... . . ........ ..+..+ -.........+.+.+++.+||+|.+..... .+..++...+
T Consensus 354 ~~l~~~~~----~-~-~~~~~~~~----~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~g 423 (694)
T PRK15179 354 SVYSDMQA----W-G-GCEFSSLL----APYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAG 423 (694)
T ss_pred EEeccCCc----c-C-cccccccc----hhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcC
Confidence 66642210 0 0 00000000 111111 111223356777888999999999865433 3566667789
Q ss_pred CCcEE
Q 036871 141 IPRLV 145 (383)
Q Consensus 141 iP~v~ 145 (383)
+|.|.
T Consensus 424 vPvIv 428 (694)
T PRK15179 424 VPRIV 428 (694)
T ss_pred CCEEE
Confidence 99875
No 147
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=76.30 E-value=4 Score=33.35 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=32.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
||++.-+|+.|=+.-...+.++|.++|++|+++.++.-
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 78888888877777767999999999999999988653
No 148
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=75.50 E-value=34 Score=31.24 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=57.9
Q ss_pred EEEE-EcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcccc
Q 036871 9 HVFF-FPFM-AHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLD 86 (383)
Q Consensus 9 ~il~-~~~~-~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 86 (383)
+|+. ++.. ..|--+-+..|++.|.++||++++++...... ..+... ..++++..++.. .
T Consensus 3 ~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~-~~~~~~-----~~~i~~~~~~~~-------~------ 63 (374)
T TIGR03088 3 LIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSA-FRKRIQ-----RPDVAFYALHKQ-------P------ 63 (374)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCCh-hHHHHH-----hcCceEEEeCCC-------C------
Confidence 5553 3333 34566889999999999999988887433222 221111 125666555311 0
Q ss_pred ccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc-hHHHHHHHhCCCcE
Q 036871 87 AITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRL 144 (383)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~-~~~~ia~~l~iP~v 144 (383)
.... . ....+...+++.++|+|-+..... .+..++...++|..
T Consensus 64 -~~~~---~-----------~~~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~ 107 (374)
T TIGR03088 64 -GKDV---A-----------VYPQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPAR 107 (374)
T ss_pred -CCCh---H-----------HHHHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeE
Confidence 0000 1 122455667778999998765433 34455667788853
No 149
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=75.22 E-value=5.5 Score=33.28 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=33.3
Q ss_pred CcEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFM--AHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~--~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
|.+|.+++++ +-|-.....+|+.+|+++|+.|.++-.+-
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 4578888888 66889999999999999999999887643
No 150
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=75.01 E-value=5.4 Score=30.78 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=36.5
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
.+++||++.+.+..||-.-..-+++.|++.|.+|.....-.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~ 50 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQ 50 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcC
Confidence 36889999999999999999999999999999998766543
No 151
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=75.01 E-value=9.9 Score=31.47 Aligned_cols=48 Identities=10% Similarity=-0.096 Sum_probs=40.3
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhh
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKS 53 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (383)
++.+|++.+.++-.|-....-++..|..+|++|+++....-.+.+.+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 457999999999999999999999999999999999876554444443
No 152
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=74.89 E-value=51 Score=31.37 Aligned_cols=39 Identities=8% Similarity=0.137 Sum_probs=31.0
Q ss_pred CCcEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 6 PQLHVFFFPFM-AHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 6 ~~~~il~~~~~-~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+|.+|++.... ..|-..-...|++.|+++|++|..+-+.
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~G 41 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVG 41 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecC
Confidence 35567777555 5688888999999999999999887663
No 153
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=74.29 E-value=22 Score=30.50 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCccch
Q 036871 22 IPIVDMAKLFASRGVKASVITTPANGPYVS 51 (383)
Q Consensus 22 ~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~ 51 (383)
.-+.+|+++|.+.| +|+++++...+..+-
T Consensus 14 ~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g 42 (244)
T TIGR00087 14 PGIRALYQALKELG-EVTVVAPARQRSGTG 42 (244)
T ss_pred HhHHHHHHHHHhCC-CEEEEeCCCCccccc
Confidence 34789999999998 899999987765443
No 154
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=74.08 E-value=11 Score=31.31 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
++.+|++.+.++-.|-....-++..|.++|++|+++....-
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p 121 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVP 121 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 36799999999999999999999999999999988875443
No 155
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=73.98 E-value=37 Score=30.87 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCC-eEEEEeCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGV-KASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH-~Vt~~~~~~ 45 (383)
+..||+++=.++-| ..+|+.|++.|+ +++++-.+.
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCCc
Confidence 46689999887765 678999999998 677665543
No 156
>PRK14099 glycogen synthase; Provisional
Probab=73.90 E-value=5.8 Score=38.08 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=31.2
Q ss_pred CCcEEEEEcCC------CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFM------AHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~------~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+++||++++.- +.|=-..+-+|.++|+++||+|.++++..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 45799988754 23445567899999999999999999844
No 157
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=73.57 E-value=50 Score=27.16 Aligned_cols=105 Identities=10% Similarity=0.162 Sum_probs=55.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCC--eEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGV--KASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH--~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
+||+++.++..+-+ ..+.+.+.+.++ +|.++.+............ ..++.+..++.. .+. .
T Consensus 1 ~riail~sg~gs~~---~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~-----~~gip~~~~~~~----~~~----~- 63 (190)
T TIGR00639 1 KRIVVLISGNGSNL---QAIIDACKEGKIPASVVLVISNKPDAYGLERAA-----QAGIPTFVLSLK----DFP----S- 63 (190)
T ss_pred CeEEEEEcCCChhH---HHHHHHHHcCCCCceEEEEEECCccchHHHHHH-----HcCCCEEEECcc----ccC----c-
Confidence 47888888775544 466777777665 6666544432222122111 125655544211 000 0
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc-hHHHHHHHhCCCcEEEe
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~-~~~~ia~~l~iP~v~~~ 147 (383)
.+....++.+.+++.++|++|+-.+.. ....+-+......+-++
T Consensus 64 ------------------~~~~~~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~iNiH 108 (190)
T TIGR00639 64 ------------------REAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIH 108 (190)
T ss_pred ------------------hhhhhHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhccCCEEEEe
Confidence 001234667788899999998765533 44444444444445444
No 158
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=72.93 E-value=30 Score=30.09 Aligned_cols=28 Identities=4% Similarity=-0.044 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhC---CCeEEEEeCCCCCccc
Q 036871 23 PIVDMAKLFASR---GVKASVITTPANGPYV 50 (383)
Q Consensus 23 p~~~la~~L~~r---GH~Vt~~~~~~~~~~~ 50 (383)
-+.+|+++|.+. |++|+++++...+.-.
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ 45 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQSGV 45 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCCCC
Confidence 367777877763 4799999998765443
No 159
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=72.86 E-value=4.3 Score=33.21 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=20.0
Q ss_pred cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 14 PFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 14 ~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+..+.|.+ =..||+++..|||+||++..+.
T Consensus 24 tN~SSG~~--G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 24 TNRSSGKM--GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EES--SHH--HHHHHHHHHHTT-EEEEEE-TT
T ss_pred cCCCcCHH--HHHHHHHHHHCCCEEEEEecCc
Confidence 33444443 3689999999999999999874
No 160
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=72.70 E-value=37 Score=29.69 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=65.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCCCCCccchhhHhhhhhcCCCcc-eEeeeCCCccCCCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRG--VKASVITTPANGPYVSKSVERANEMGIELD-VKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rG--H~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~ 85 (383)
|||++-..+-|++.-+..+.++|.++. -+|++++.+...+.++.. ..++ +..++ . . . ..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~--------p~id~v~~~~--~-----~-~--~~ 62 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM--------PEVDRVIVLP--K-----K-H--GK 62 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC--------CccCEEEEcC--C-----c-c--cc
Confidence 689999999999999999999999984 899999998766554433 1232 22221 0 0 0 00
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEE
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~ 146 (383)
. . ... ...+...+++.++|+++.=....-...++...+++...-
T Consensus 63 ~--------~-~~~--------~~~~~~~l~~~~~D~vi~~~~~~~~~~~~~~~~~~~~~g 106 (279)
T cd03789 63 L--------G-LGA--------RRRLARALRRRRYDLAIDLQGSLRSALLPFLAGAPRRIG 106 (279)
T ss_pred c--------c-hHH--------HHHHHHHHhhcCCCEEEECCCccHHHHHHHHhCCCeEEE
Confidence 0 0 000 123344567789999986555554455677778876653
No 161
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=72.67 E-value=8.9 Score=36.27 Aligned_cols=91 Identities=21% Similarity=0.302 Sum_probs=52.0
Q ss_pred CCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHh-hCCCCeEecCcccHHHhh
Q 036871 285 PNSVVYICFGSIANFTSAQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKR-MKGKGLIIRGWAPQVLIL 363 (383)
Q Consensus 285 ~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~nv~~~~~~Pq~~lL 363 (383)
++.++|.||......+++.+..-.+.+++.+.-.+|........ ++. +-..+.+. ..++++.+.++.|+.+-|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~--~~~----l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG--EAR----LRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH--HHH----HHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH--HHH----HHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 46799999999999999999998999999999999988655321 111 11112211 134678888888876654
Q ss_pred ---cCCCceeec---cccccchhccC
Q 036871 364 ---DHEAVGGFV---THCGWNSTIEA 383 (383)
Q Consensus 364 ---~~~~~~~fI---tHGG~~s~~Ea 383 (383)
...++ ++ ..+|..|++||
T Consensus 357 ~~~~~~DI--~LDT~p~nG~TTt~dA 380 (468)
T PF13844_consen 357 RRYQLADI--CLDTFPYNGGTTTLDA 380 (468)
T ss_dssp HHGGG-SE--EE--SSS--SHHHHHH
T ss_pred HHhhhCCE--EeeCCCCCCcHHHHHH
Confidence 33444 43 34555566664
No 162
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=72.52 E-value=9.6 Score=30.39 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=24.5
Q ss_pred CCcEEEEEeCCcccCCHhhHHHHHHHHHhCC
Q 036871 285 PNSVVYICFGSIANFTSAQLMEIATGLEASR 315 (383)
Q Consensus 285 ~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~ 315 (383)
.+..+|+++||......+.+...++.+++.+
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 4568999999999777777777788887753
No 163
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=71.39 E-value=44 Score=30.12 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=32.1
Q ss_pred CcEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 7 QLHVFFFPFM-AHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 7 ~~~il~~~~~-~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
+.||++++.= +-|-..--.+.|-.|++.|..|.++++++-.
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 3577777665 6688888899999999999988777776643
No 164
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=71.30 E-value=20 Score=34.43 Aligned_cols=46 Identities=4% Similarity=0.024 Sum_probs=38.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhh
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKS 53 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (383)
.-+++.-.|+.|-..-.++++.+.+++|..|.+++.++..+.+...
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 3566666778899999999999999999999999998876666554
No 165
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=71.07 E-value=4.2 Score=33.22 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCCCccc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFAS-RGVKASVITTPANGPYV 50 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~-rGH~Vt~~~~~~~~~~~ 50 (383)
|+||++.-+|+.+ ..=...+.++|.+ .||+|.++.++.-...+
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv 44 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTL 44 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHH
Confidence 4689999999877 4448999999999 59999999997654433
No 166
>PRK05920 aromatic acid decarboxylase; Validated
Probab=71.04 E-value=7.1 Score=32.43 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCcc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPY 49 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~ 49 (383)
++||++.-.++.+= .=...+.+.|.+.||+|.++.++.-...
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~f 44 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKV 44 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHH
Confidence 56898888886554 5688999999999999999998764433
No 167
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=70.81 E-value=50 Score=30.46 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=33.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYV 50 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~ 50 (383)
=+++.--|+.|--.-++.++..++++|..|.+++.++..+.+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 455666668899999999999999999999999887654433
No 168
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=70.58 E-value=26 Score=28.68 Aligned_cols=99 Identities=17% Similarity=0.268 Sum_probs=48.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCC-ccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANG-PYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENL 85 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 85 (383)
+++.+-..+-|-++....|+++|.++ |++|.+-+..... +.+.+.. +..+....+|++
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~------~~~v~~~~~P~D------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL------PDRVDVQYLPLD------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-------GGG-SEEE---S-------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC------CCCeEEEEeCcc-------------
Confidence 44555556779999999999999998 8998777764432 1122110 012222223211
Q ss_pred cccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCch--HHHHHHHhCCCcEEEe
Q 036871 86 DAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPRLVFH 147 (383)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~--~~~ia~~l~iP~v~~~ 147 (383)
.-..++.+++..+||++|.--...| -...+++.|||.+.+.
T Consensus 83 ---------------------~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 ---------------------FPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ---------------------SHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred ---------------------CHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 1224567778888998874444444 4555677899998865
No 169
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=70.53 E-value=8.8 Score=34.45 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=33.6
Q ss_pred HHHhHHHHHHHhhcCCCCEEEecCCCchH----------HHHHHHhCCCcEEEe
Q 036871 104 TTKLQEPLEQLLRDHKPDCLVADIFFPWA----------TDAAAKFGIPRLVFH 147 (383)
Q Consensus 104 ~~~~~~~l~~~l~~~~~D~vi~d~~~~~~----------~~ia~~l~iP~v~~~ 147 (383)
.+...+.+.+.+++.+||++|+.+.|..+ ..+.++++||.+...
T Consensus 65 ~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 65 KEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 34567788889999999999999976632 235578999988653
No 170
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=69.45 E-value=17 Score=29.16 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=27.3
Q ss_pred hHHHHHHHhhcCCCCEEEecCCCchHH--HHHH--H-h-CCCcEEEe
Q 036871 107 LQEPLEQLLRDHKPDCLVADIFFPWAT--DAAA--K-F-GIPRLVFH 147 (383)
Q Consensus 107 ~~~~l~~~l~~~~~D~vi~d~~~~~~~--~ia~--~-l-~iP~v~~~ 147 (383)
..+.+.+.|++.+||+||+-..+..+. ...+ . + ++|.+.+.
T Consensus 77 ~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvv 123 (169)
T PF06925_consen 77 FARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVV 123 (169)
T ss_pred HHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEE
Confidence 466888999999999999987664333 2112 2 3 46766554
No 171
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=69.19 E-value=18 Score=27.74 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchh
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSK 52 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (383)
+.+|++-+...-+|-.--.-++..|.++|++|+.+......+.+.+
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~ 46 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIK 46 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 3589999999999999999999999999999999887655443333
No 172
>PRK12342 hypothetical protein; Provisional
Probab=69.07 E-value=10 Score=32.75 Aligned_cols=39 Identities=10% Similarity=-0.085 Sum_probs=28.2
Q ss_pred HHHHhhcCCCCEEEecCCCc------hHHHHHHHhCCCcEEEecc
Q 036871 111 LEQLLRDHKPDCLVADIFFP------WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 111 l~~~l~~~~~D~vi~d~~~~------~~~~ia~~l~iP~v~~~~~ 149 (383)
+-+.+++.+||+|++..-+. .+..+|+.||+|++.+...
T Consensus 101 La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 101 LAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 33444555699999765433 3899999999999987643
No 173
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=68.86 E-value=7.8 Score=33.64 Aligned_cols=39 Identities=8% Similarity=0.176 Sum_probs=25.4
Q ss_pred CcEEEEEeCCcccCCHh-hHHHHHHHHHhC--CCcEEEEEec
Q 036871 286 NSVVYICFGSIANFTSA-QLMEIATGLEAS--RRNFIWVVRR 324 (383)
Q Consensus 286 ~~vV~vs~GS~~~~~~~-~~~~~~~a~~~~--~~~viw~~~~ 324 (383)
|.++++||||......+ -+..+.+.+++. ++.|-|++..
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 45899999999875544 677777777765 7788898764
No 174
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=68.67 E-value=17 Score=30.96 Aligned_cols=41 Identities=17% Similarity=0.058 Sum_probs=32.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCcc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPY 49 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~ 49 (383)
-+++.-.++.|-.....+++.+.+++|..|.+++.+...+.
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~ 67 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKS 67 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Confidence 45666667889999999998888889999999999765433
No 175
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=68.64 E-value=19 Score=30.05 Aligned_cols=98 Identities=13% Similarity=0.177 Sum_probs=53.6
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccchhhhHHH
Q 036871 17 AHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEVNKEL 96 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (383)
+.|----..+++-.+...||.|++++++.- ++.....+..-++.+.=..+ .+.-..-.... ..
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T---~refi~qm~sl~ydv~~~~l----------~G~l~~~~~~~----~~ 100 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELT---VREFIKQMESLSYDVSDFLL----------SGRLLFFPVNL----EP 100 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechh---HHHHHHHHHhcCCCchHHHh----------cceeEEEEecc----cc
Confidence 567777788999999999999999999764 33333322222222211000 00000000000 00
Q ss_pred HHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCch
Q 036871 97 IVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPW 131 (383)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~ 131 (383)
..+-.+..+.+...+.+.++..+.|++|.|++...
T Consensus 101 ~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~ 135 (235)
T COG2874 101 VNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAF 135 (235)
T ss_pred cccChHHHHHHHHHHHhhHHhhcCCEEEEecccHH
Confidence 01112223334566667777889999999998764
No 176
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=67.50 E-value=5.4 Score=31.60 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=25.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
||.++-.|..|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466666666665 78999999999999999865
No 177
>PRK11823 DNA repair protein RadA; Provisional
Probab=67.15 E-value=56 Score=31.06 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccch
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVS 51 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~ 51 (383)
..-+++.--|+.|-..-+++++..++++|++|.+++.++..+.+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 334566666788999999999999999999999999877655443
No 178
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=67.07 E-value=6.1 Score=34.20 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=38.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchh
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSK 52 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (383)
...++++=.++.|-..-..++|.+|.++|+.|+|++.++....+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 4578888888888888899999999999999999999876554444
No 179
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=66.85 E-value=79 Score=26.76 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=26.9
Q ss_pred EEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFM--AHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~--~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+.+|++.. .-|-......|+++|.++|++|.+.=+
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KP 39 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKP 39 (223)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECc
Confidence 34444443 558888999999999999999987654
No 180
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=66.71 E-value=39 Score=23.64 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=24.2
Q ss_pred HHHHHhhcCCCCEEEecCC--C-------chHHHHHHHhCCCcE
Q 036871 110 PLEQLLRDHKPDCLVADIF--F-------PWATDAAAKFGIPRL 144 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~d~~--~-------~~~~~ia~~l~iP~v 144 (383)
.+.+.+++.++|+||.-.. . ..-...|...+||++
T Consensus 46 ~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 3667888999999997432 1 123455778888865
No 181
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=66.67 E-value=39 Score=29.22 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=30.1
Q ss_pred EEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 11 FFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 11 l~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
++..-|+.|......++|..++++|++|.++..+..
T Consensus 4 ~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 4 FFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 344456889999999999999999999999987664
No 182
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=66.58 E-value=26 Score=28.32 Aligned_cols=43 Identities=9% Similarity=-0.034 Sum_probs=33.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchh
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSK 52 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (383)
+++.-.|+.|=..-...++.+.++.|..|.+++.+...+.+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 4556666778888899999999999999999998776554433
No 183
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=65.90 E-value=6.1 Score=32.02 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=23.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
||.++ ++.|++- ..++++..+|||+||.++-..
T Consensus 2 KIaiI--gAsG~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 2 KIAII--GASGKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred eEEEE--ecCchhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 55554 4555554 467899999999999988543
No 184
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=65.73 E-value=22 Score=33.55 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+++|||++-.+++-| +|++.|.+-|+-..+++.+.
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pg 37 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPG 37 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECC
Confidence 367999999999887 57899999886555555444
No 185
>PRK10867 signal recognition particle protein; Provisional
Probab=65.57 E-value=49 Score=31.25 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=34.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCCcc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASR-GVKASVITTPANGPY 49 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~r-GH~Vt~~~~~~~~~~ 49 (383)
-|+++-.++.|-..-...||..|+++ |+.|.+++.+.++..
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 34455555889999999999999999 999999999887654
No 186
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=65.37 E-value=8.3 Score=31.42 Aligned_cols=41 Identities=10% Similarity=0.149 Sum_probs=32.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYV 50 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~ 50 (383)
||++.-+|+.|-.. ...+.++|.++|++|.++.++.-...+
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 46777777777776 488999999999999999997754443
No 187
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=65.14 E-value=14 Score=31.95 Aligned_cols=39 Identities=10% Similarity=-0.056 Sum_probs=28.1
Q ss_pred HHHHhhcCCCCEEEecCCCc------hHHHHHHHhCCCcEEEecc
Q 036871 111 LEQLLRDHKPDCLVADIFFP------WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 111 l~~~l~~~~~D~vi~d~~~~------~~~~ia~~l~iP~v~~~~~ 149 (383)
+-+.+++.+||+||+..-+. .+..+|+.||+|++.+...
T Consensus 104 La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 104 LAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 33445555799999754322 4788999999999987654
No 188
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=65.05 E-value=21 Score=26.85 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=34.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
||++.+.++-.|..-..-++.-|..+|++|+++....-
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 68999999999999999999999999999999987544
No 189
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.97 E-value=60 Score=30.38 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=38.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhh
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKS 53 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (383)
..|+++=.-+.|-....-.||+.|.++|+.|-+++.+.++......
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQ 146 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQ 146 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHH
Confidence 4567777778899999999999999999999999998887544333
No 190
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=64.91 E-value=22 Score=29.81 Aligned_cols=47 Identities=6% Similarity=-0.014 Sum_probs=39.5
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchh
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSK 52 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (383)
++.+|++.+.++-.|-....-++-.|..+|++|+++....-.+.+..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~ 133 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILE 133 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHH
Confidence 46799999999999999999999999999999999987554433333
No 191
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=64.41 E-value=44 Score=24.43 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=52.7
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccchhhhHHHHH
Q 036871 19 GHMIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEVNKELIV 98 (383)
Q Consensus 19 gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (383)
++-.-+..+++.|.+.|+++ + +++...+.+++. |+.+..+... ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~-aT~gT~~~l~~~---------gi~~~~v~~~------~~------------------ 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-V-ATEGTAKYLQEA---------GIPVEVVNKV------SE------------------ 54 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-E-EchHHHHHHHHc---------CCeEEEEeec------CC------------------
Confidence 34556889999999999997 3 344444444443 5554444211 00
Q ss_pred HHHHHHHHhHHHHHHHhhcCCCCEEEecCC-------CchHHHHHHHhCCCcEE
Q 036871 99 KFVGATTKLQEPLEQLLRDHKPDCLVADIF-------FPWATDAAAKFGIPRLV 145 (383)
Q Consensus 99 ~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~-------~~~~~~ia~~l~iP~v~ 145 (383)
-.+.+.+.+++.++|+||.-.. .+.-...|-..|||++.
T Consensus 55 --------~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 --------GRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred --------CchhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 1235678888999999997432 12345567888999884
No 192
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=64.26 E-value=1.3e+02 Score=28.19 Aligned_cols=36 Identities=14% Similarity=0.279 Sum_probs=26.2
Q ss_pred EEEE--EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFF--FPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~--~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
||++ -.+|..||..-. .=..+|.++||+|.+++-..
T Consensus 2 ~ia~~~~~~P~~setFi~-~ei~~l~~~G~~v~~~s~~~ 39 (406)
T PRK15427 2 KVGFFLLKFPLSSETFVL-NQITAFIDMGFEVEIVALQK 39 (406)
T ss_pred eEEEEeccCCccchhhHH-HHHHHHHHcCceEEEEEccC
Confidence 4444 467788998755 44567889999999998643
No 193
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=63.71 E-value=20 Score=31.93 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
++||+|+-+|.. -...-++|.++||+|.-+.+...
T Consensus 1 ~mkivF~GTp~f-----a~~~L~~L~~~~~eivaV~Tqpd 35 (307)
T COG0223 1 MMRIVFFGTPEF-----AVPSLEALIEAGHEIVAVVTQPD 35 (307)
T ss_pred CcEEEEEcCchh-----hHHHHHHHHhCCCceEEEEeCCC
Confidence 468999888753 35566788889999876665444
No 194
>PRK14098 glycogen synthase; Provisional
Probab=63.21 E-value=14 Score=35.50 Aligned_cols=40 Identities=8% Similarity=0.141 Sum_probs=31.1
Q ss_pred CCcEEEEEcCC------CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFM------AHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~------~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
.|+||++++.- +.|=-..+-.|.++|+++||+|.++++..
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 45899988754 22444557899999999999999999844
No 195
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=62.66 E-value=7.6 Score=31.51 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=31.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYV 50 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~ 50 (383)
||++.-+++.| ..-...+.+.|.++|++|.++.++.-...+
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 68888888754 445669999999999999999987644433
No 196
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=62.20 E-value=49 Score=26.18 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=23.5
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEE
Q 036871 15 FMAHGHMIPIVDMAKLFASRGVKASVI 41 (383)
Q Consensus 15 ~~~~gH~~p~~~la~~L~~rGH~Vt~~ 41 (383)
.+..|-..-...|++.|+++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 346688888999999999999999886
No 197
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=61.69 E-value=60 Score=23.87 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCccccccchhhhHHHHHHH
Q 036871 21 MIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCENLDAITNEVNKELIVKF 100 (383)
Q Consensus 21 ~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (383)
=.=+..+++.|.+.|+++ ++| +.-.+.+++. |+.+..+.. ..++
T Consensus 11 K~~~~~~a~~l~~~G~~i-~AT-~gTa~~L~~~---------Gi~~~~v~~------~~~~------------------- 54 (112)
T cd00532 11 KAMLVDLAPKLSSDGFPL-FAT-GGTSRVLADA---------GIPVRAVSK------RHED------------------- 54 (112)
T ss_pred HHHHHHHHHHHHHCCCEE-EEC-cHHHHHHHHc---------CCceEEEEe------cCCC-------------------
Confidence 344789999999999997 344 4444444443 565555421 1110
Q ss_pred HHHHHHhHHHHHHHhhc-CCCCEEEe--cCCC--------chHHHHHHHhCCCcEE
Q 036871 101 VGATTKLQEPLEQLLRD-HKPDCLVA--DIFF--------PWATDAAAKFGIPRLV 145 (383)
Q Consensus 101 ~~~~~~~~~~l~~~l~~-~~~D~vi~--d~~~--------~~~~~ia~~l~iP~v~ 145 (383)
-.+.+.+.+++ .+.|+||. +... +--.-.|-..+||++.
T Consensus 55 ------g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 55 ------GEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred ------CCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 01356677888 89999986 3222 1134457788999875
No 198
>PRK06988 putative formyltransferase; Provisional
Probab=61.69 E-value=1e+02 Score=27.65 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
|+||+|+-.+. .-....++|.++||+|..+.+..
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~~ 35 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTHE 35 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcCC
Confidence 46999986554 24556778888999987766643
No 199
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=61.56 E-value=16 Score=33.85 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=33.7
Q ss_pred HHHhHHHHHHHhhcCCCCEEEecCCCchH----------HHHHHHhCCCcEEEe
Q 036871 104 TTKLQEPLEQLLRDHKPDCLVADIFFPWA----------TDAAAKFGIPRLVFH 147 (383)
Q Consensus 104 ~~~~~~~l~~~l~~~~~D~vi~d~~~~~~----------~~ia~~l~iP~v~~~ 147 (383)
.+...+.+.+.+++.+||++|+.+.|..+ ..+.++++||.+...
T Consensus 61 ~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 45557888899999999999999976532 234567999988754
No 200
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=61.54 E-value=12 Score=29.52 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=35.3
Q ss_pred CCCcEEEEEcCCCcccHHH-HHHHHHHHHhC--CCeEEEEeCCCCCccc
Q 036871 5 VPQLHVFFFPFMAHGHMIP-IVDMAKLFASR--GVKASVITTPANGPYV 50 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p-~~~la~~L~~r--GH~Vt~~~~~~~~~~~ 50 (383)
++++||+..-+++ ||..+ ...+-++|.++ +|+|+++.+..-++.+
T Consensus 6 ~~~~rIaWgITGa-G~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVv 53 (187)
T COG1036 6 KKKKRIAWGITGA-GHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVV 53 (187)
T ss_pred cccceEEEEEecc-ccccHHHHHHHHHHHhhcCCceEEEeehhhHHHHH
Confidence 4566898877776 88777 78899999998 7999999986654433
No 201
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=61.48 E-value=16 Score=33.81 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=33.6
Q ss_pred HHHhHHHHHHHhhcCCCCEEEecCCCchH----------HHHHHHhCCCcEEEe
Q 036871 104 TTKLQEPLEQLLRDHKPDCLVADIFFPWA----------TDAAAKFGIPRLVFH 147 (383)
Q Consensus 104 ~~~~~~~l~~~l~~~~~D~vi~d~~~~~~----------~~ia~~l~iP~v~~~ 147 (383)
.+...+.+.+.+++.+||++|+.+.|..+ ..+.++++||.+...
T Consensus 61 ~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 61 LEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 44556888899999999999999976532 234567999988754
No 202
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=61.18 E-value=60 Score=24.35 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC
Q 036871 22 IPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 22 ~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
..+-.+...|.++|++|++++-
T Consensus 12 l~~gg~i~~~~~~g~~v~vv~~ 33 (128)
T PF02585_consen 12 LGCGGTIAKLAEAGHRVVVVTL 33 (128)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEC
T ss_pred HhhHHHHHHHHhcCCeEEEEEe
Confidence 3455666788899999987764
No 203
>PLN02316 synthase/transferase
Probab=61.03 E-value=16 Score=38.31 Aligned_cols=41 Identities=10% Similarity=0.200 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCC-----ccc-HHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 6 PQLHVFFFPFMA-----HGH-MIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 6 ~~~~il~~~~~~-----~gH-~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
..+||++++.-. .|- -.-...|+++|+++||+|.++++...
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 357999887431 233 33468999999999999999998653
No 204
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=60.71 E-value=15 Score=27.89 Aligned_cols=39 Identities=13% Similarity=0.320 Sum_probs=28.6
Q ss_pred CcEEEEEeCCcccCCHhhHHHHHHHHHhC--CCcEEEEEec
Q 036871 286 NSVVYICFGSIANFTSAQLMEIATGLEAS--RRNFIWVVRR 324 (383)
Q Consensus 286 ~~vV~vs~GS~~~~~~~~~~~~~~a~~~~--~~~viw~~~~ 324 (383)
+++++++|||......+.+..+.+.+++. ++.|-|.+..
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 36899999999875556677777777543 4578888754
No 205
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.56 E-value=20 Score=30.28 Aligned_cols=36 Identities=14% Similarity=-0.055 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
++++|++ .++.|++- ..|++.|.++||+|++++...
T Consensus 5 ~~~~vlI--tGasg~iG--~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 5 MGRVALV--TGAARGLG--RAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CCCEEEE--eCCCchHH--HHHHHHHHHCCCeEEEEeCCC
Confidence 4456665 55667754 678999999999997766543
No 206
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=59.71 E-value=98 Score=26.85 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=31.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
-+++.-.|+.|=..-..+++...+++|..|.+++.+...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 455666668899999999999988899999999987543
No 207
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=59.54 E-value=1.2e+02 Score=27.27 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCccc-----HHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCC
Q 036871 7 QLHVFFFPFMAHGH-----MIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEG 81 (383)
Q Consensus 7 ~~~il~~~~~~~gH-----~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 81 (383)
+.-|++.|..+.|. .--+..|++.|.++|.+|.++.+++..+..+.... .. +..
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~-------~~--------------~~~ 232 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEA-------LL--------------PGE 232 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHH-------hC--------------Ccc
Confidence 34566666553331 22478999999988999888877654332222100 00 000
Q ss_pred CccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecc
Q 036871 82 CENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~ 149 (383)
..+..... -..++..+++ +.|++|+- +.+...+|..+|+|.|.++..
T Consensus 233 ~~~l~g~~-----------------sL~el~ali~--~a~l~I~~--DSGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 233 LRNLAGET-----------------SLDEAVDLIA--LAKAVVTN--DSGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred cccCCCCC-----------------CHHHHHHHHH--hCCEEEee--CCHHHHHHHHcCCCEEEEECC
Confidence 00000000 0224445555 67899965 345788999999999987653
No 208
>PRK07206 hypothetical protein; Provisional
Probab=59.35 E-value=50 Score=30.89 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=24.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
++|+++-.... -..+++++.++|+++.+++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 46777765433 3468899999999998888754
No 209
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=59.20 E-value=52 Score=29.51 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=29.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
|.=++.++.|-.--...|++.|.++|++|.+++-.
T Consensus 33 VGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 67 (311)
T TIGR00682 33 VGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRG 67 (311)
T ss_pred EeccccCCcChHHHHHHHHHHHHHCCCEEEEECCC
Confidence 34456788899999999999999999999988853
No 210
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=59.09 E-value=50 Score=29.92 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=69.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCEN 84 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 84 (383)
+++|+++-...-|++.-...+-..|.++ +.++++++.+.+.+.++.. ..++-+.+. . ..+..
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~-~------~~~~~- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIII-D------KKKKG- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhccc-c------ccccc-
Confidence 4699999999999999999999999999 5999999998776554432 122211110 0 00000
Q ss_pred ccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEE
Q 036871 85 LDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLV 145 (383)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~ 145 (383)
... . -...+...+++.++|+||.=.-..-...++...++|.-.
T Consensus 65 -~~~------~-----------~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 -LGL------K-----------ERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred -cch------H-----------HHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 000 0 123555667788999999666555566777778888655
No 211
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=59.04 E-value=8.9 Score=33.01 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 20 HMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 20 H~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
=-...-.|+++|+++||+|+++++..
T Consensus 18 Lgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 18 LGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 34457899999999999999999854
No 212
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=58.95 E-value=51 Score=29.65 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=29.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
|.=++.|+.|-.--.+.||++|++||..+-+++=
T Consensus 52 VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSR 85 (336)
T COG1663 52 VGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSR 85 (336)
T ss_pred EccEEECCCCcCHHHHHHHHHHHhcCCeeEEEec
Confidence 3456788999999999999999999999998874
No 213
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=58.75 E-value=31 Score=28.30 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCCCEEEe-cCCC-chHHHHHHHhCCCcEEEec
Q 036871 108 QEPLEQLLRDHKPDCLVA-DIFF-PWATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 108 ~~~l~~~l~~~~~D~vi~-d~~~-~~~~~ia~~l~iP~v~~~~ 148 (383)
...+.+.+++.++|+|+. +.-. ..|..+|..+|+|++..--
T Consensus 39 ~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 39 GKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 344444555678999983 4433 3689999999999998653
No 214
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=58.72 E-value=1e+02 Score=28.94 Aligned_cols=34 Identities=38% Similarity=0.421 Sum_probs=27.4
Q ss_pred HHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEE
Q 036871 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~ 146 (383)
++.+.+++.++|++|.... ...+|+++|+|++..
T Consensus 347 e~~~~i~~~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEKKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhcCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 5667778889999999855 568999999998843
No 215
>PRK00784 cobyric acid synthase; Provisional
Probab=58.45 E-value=99 Score=29.80 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=28.9
Q ss_pred cEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 8 LHVFFFPFM-AHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 8 ~~il~~~~~-~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
..|++..+. ..|-..-...|++.|+++|++|..+=+
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 356666554 568999999999999999999987655
No 216
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=58.35 E-value=87 Score=29.85 Aligned_cols=44 Identities=9% Similarity=0.002 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYV 50 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~ 50 (383)
..-+++.--|+.|-..-++.++..++++|++|.+++.++..+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 33455666678899999999999999999999999987654433
No 217
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=57.99 E-value=32 Score=29.75 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
+...|.+.=.|+.|--.-.-.|++.|.++||+|-+++-++.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS 68 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPS 68 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCC
Confidence 45678888888999999999999999999999999886553
No 218
>PRK09739 hypothetical protein; Provisional
Probab=57.88 E-value=27 Score=28.85 Aligned_cols=37 Identities=8% Similarity=0.101 Sum_probs=23.7
Q ss_pred CCcEEEEEcC-CCc-cc-HHHHHHHHHHHHhCCCeEEEEe
Q 036871 6 PQLHVFFFPF-MAH-GH-MIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 6 ~~~~il~~~~-~~~-gH-~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
+|+||+++.. |-. |. -.-...++++|.++||+|+++-
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4667886644 432 22 2235667777888999998765
No 219
>PRK09620 hypothetical protein; Provisional
Probab=57.74 E-value=19 Score=30.56 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=21.7
Q ss_pred cCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 14 PFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 14 ~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+..+.|-+- ..||++|.++||+|+++...
T Consensus 24 tN~SSGfiG--s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 24 TNMAKGTIG--RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred cCCCcCHHH--HHHHHHHHHCCCeEEEEeCC
Confidence 333445554 67899999999999999754
No 220
>PLN02939 transferase, transferring glycosyl groups
Probab=57.24 E-value=23 Score=36.76 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCC------CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 5 VPQLHVFFFPFM------AHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 5 ~~~~~il~~~~~------~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
.+++||++++.- ..|=-...-.|.++|+++||+|.++++...
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 457899988653 223345578899999999999999998553
No 221
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=57.02 E-value=36 Score=30.53 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=23.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+||+|+-.+.. .+...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcC
Confidence 37888865543 367778889999998765543
No 222
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=56.62 E-value=13 Score=31.46 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 20 HMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 20 H~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
|+..|...|++|.++||+|.++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56789999999999999999998754
No 223
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.48 E-value=72 Score=29.43 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCCcEEE-EEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCcc
Q 036871 5 VPQLHVF-FFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPY 49 (383)
Q Consensus 5 ~~~~~il-~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~ 49 (383)
|.++.|+ |+-.-+.|-......+|..+.++|+.+.+++.+.|+.-
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG 143 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc
Confidence 3455555 55555889999999999999999999999999988653
No 224
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=56.16 E-value=90 Score=29.46 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=33.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCCCCcc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFA-SRGVKASVITTPANGPY 49 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~-~rGH~Vt~~~~~~~~~~ 49 (383)
-|+++-.++.|-..-...||..|. ++|..|.+++.+.++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 344555568899999999999997 68999999999887654
No 225
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=55.90 E-value=14 Score=29.72 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=23.1
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 15 FMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 15 ~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+|+.|++- ..++++|.++||+|+.++-..
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSG
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCc
Confidence 45667665 569999999999999998643
No 226
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=55.76 E-value=21 Score=33.68 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEe
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~ 147 (383)
.++++.+++.++|++|.+.. ...+|+++++|++.+.
T Consensus 361 ~el~~~i~~~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhccCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 45556677788999999975 5789999999998754
No 227
>PLN02293 adenine phosphoribosyltransferase
Probab=55.22 E-value=43 Score=27.43 Aligned_cols=40 Identities=10% Similarity=0.011 Sum_probs=28.1
Q ss_pred hHHHHHHHhhcCCCCEEE-ecCCCc-hHHHHHHHhCCCcEEE
Q 036871 107 LQEPLEQLLRDHKPDCLV-ADIFFP-WATDAAAKFGIPRLVF 146 (383)
Q Consensus 107 ~~~~l~~~l~~~~~D~vi-~d~~~~-~~~~ia~~l~iP~v~~ 146 (383)
+.+.+.+.+++.++|+|+ .+.-.. .|..+|..+|+|++..
T Consensus 50 ~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 50 TIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 344455555666889988 444333 6899999999998764
No 228
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=55.15 E-value=18 Score=29.19 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=29.9
Q ss_pred EEEEEcCCCcccHHH-HHHHHHHHHh-CCCeEEEEeCCCCCcc
Q 036871 9 HVFFFPFMAHGHMIP-IVDMAKLFAS-RGVKASVITTPANGPY 49 (383)
Q Consensus 9 ~il~~~~~~~gH~~p-~~~la~~L~~-rGH~Vt~~~~~~~~~~ 49 (383)
||++.-.++ ||... ...+.++|.+ +||+|.++.++.-.+.
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~v 42 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQV 42 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHH
Confidence 456666665 78765 8899999985 5999999998775543
No 229
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=54.75 E-value=15 Score=34.91 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCcccHHHH------------HHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPI------------VDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~------------~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+..||++...|+.=.+.|. .+||+++..||++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 5668888777776666664 578999999999999999754
No 230
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=54.46 E-value=13 Score=28.22 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=22.0
Q ss_pred EEEEeCCcccCCHhhHHHHHHHHHhCCCc
Q 036871 289 VYICFGSIANFTSAQLMEIATGLEASRRN 317 (383)
Q Consensus 289 V~vs~GS~~~~~~~~~~~~~~a~~~~~~~ 317 (383)
+|+|+||......+.+...++.+++....
T Consensus 1 ~~i~lGSN~g~~~~~l~~A~~~L~~~~~~ 29 (127)
T TIGR01498 1 AYIALGSNLGDRLKNLRAALAALAALPVR 29 (127)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHhcCCcc
Confidence 58999999976667777777777765533
No 231
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=54.35 E-value=22 Score=33.17 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=36.1
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccch
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVS 51 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~ 51 (383)
+++.||++.-.++.+ ..=...+.+.|.++|++|.++.++.-...+.
T Consensus 4 l~~k~IllgvTGsia-a~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 4 LAGKRIVLGVSGGIA-AYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCCCeEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 456799999888754 4457889999999999999999877554443
No 232
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=54.24 E-value=26 Score=27.35 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=30.6
Q ss_pred CCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCcEEEEEec
Q 036871 285 PNSVVYICFGSIANFTSAQLMEIATGLEASRRNFIWVVRR 324 (383)
Q Consensus 285 ~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~viw~~~~ 324 (383)
...+|.|++||......+.++.+++.+.. +.++++....
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~~-~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALGP-DRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcCC-CCEEEEEECC
Confidence 35699999999998888889999888853 5777776543
No 233
>PRK04328 hypothetical protein; Provisional
Probab=54.01 E-value=1.4e+02 Score=25.61 Aligned_cols=46 Identities=11% Similarity=-0.083 Sum_probs=33.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchh
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSK 52 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (383)
..-+++.-.|+.|-..-...++.+-+++|+.+.+++.+...+.+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHH
Confidence 3355666666888877777777776788999999998776554443
No 234
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=53.59 E-value=16 Score=31.14 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=31.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANGPYV 50 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~ 50 (383)
||++.-+|+.+=+.=...|.+.|.++ ||+|.++.++.-.+.+
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 45665566544446789999999999 9999999987654443
No 235
>PRK03094 hypothetical protein; Provisional
Probab=53.59 E-value=13 Score=25.51 Aligned_cols=21 Identities=10% Similarity=0.344 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 036871 24 IVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 24 ~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+..+.++|.++||+|+=+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 557899999999999877653
No 236
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=53.51 E-value=82 Score=26.43 Aligned_cols=47 Identities=11% Similarity=-0.037 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhh
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKS 53 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (383)
..-+++.-.|+.|-..-...++..-+++|+.|.+++.+...+.+...
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 33455666667788777888888877889999999998765554443
No 237
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=53.09 E-value=13 Score=34.34 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
.+..|+++++|..|+-.-+..++.+|+.+|+=|..+-+.+.
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHrDg 138 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHRDG 138 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---SS
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccCCC
Confidence 46789999999999999999999999999999888877553
No 238
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=52.72 E-value=2e+02 Score=29.16 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=29.3
Q ss_pred EEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFM-AHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~-~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
.|.+.+.. ..|-..-.+.|++.|.++|.+|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 57777665 468888899999999999999998765
No 239
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=52.55 E-value=25 Score=33.17 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEe
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~ 147 (383)
.++++.+++.++|++|.+.. +..+|++++||++.+.
T Consensus 362 ~e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 45566677788999999875 6789999999988653
No 240
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=52.18 E-value=47 Score=26.96 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=28.9
Q ss_pred HHHHHhhcCCCCEEE-ecCC-CchHHHHHHHhCCCcEEEe
Q 036871 110 PLEQLLRDHKPDCLV-ADIF-FPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi-~d~~-~~~~~~ia~~l~iP~v~~~ 147 (383)
.+.+..++.++|.|+ .+.- +..|..+|.++|+|+|..-
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 555666667899999 4443 3479999999999999853
No 241
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=52.12 E-value=27 Score=29.84 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCCCcEEEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 4 KVPQLHVFFF-PFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 4 ~~~~~~il~~-~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
.++.++|+++ ++| --=..-+-+....|+++||+|++++-
T Consensus 7 ~~~~~~vL~v~aHP-DDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 7 MLDPLRVLVVFAHP-DDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred cccCCcEEEEecCC-cchhhccHHHHHHHHHCCCeEEEEEc
Confidence 3456677744 444 22234566777788999999998874
No 242
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=51.87 E-value=27 Score=33.04 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEe
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~ 147 (383)
.++++.+++.++|++|.... +..+|+++|||++.+.
T Consensus 363 ~~l~~~i~~~~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 363 EDLEDLACAAGADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred HHHHHHHhhcCCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 46677777889999998865 6889999999998753
No 243
>PLN00016 RNA-binding protein; Provisional
Probab=51.85 E-value=19 Score=33.27 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=25.7
Q ss_pred CcEEEEEcC--CCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 7 QLHVFFFPF--MAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 7 ~~~il~~~~--~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+.+|+++.. |+.|.+- ..|+++|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecC
Confidence 457877622 4445544 56789999999999998854
No 244
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=51.58 E-value=22 Score=30.28 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=23.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
|-+++..+.|-+- ..||++|.++||+|+++..
T Consensus 17 VR~itN~SSG~iG--~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 17 VRGITNHSTGQLG--KIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred ceeecCccchHHH--HHHHHHHHhCCCEEEEEEC
Confidence 4455555555443 6788999999999999874
No 245
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=51.58 E-value=25 Score=33.23 Aligned_cols=37 Identities=11% Similarity=0.326 Sum_probs=28.5
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEec
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~ 148 (383)
.++++.+++.+||++|.+.. ...+|+++|+|.+.++.
T Consensus 360 ~e~~~~i~~~~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHHhhCCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 34556677788999999874 56678999999988654
No 246
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=51.36 E-value=16 Score=33.90 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccch
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVS 51 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~ 51 (383)
++.||++.-+++.+= .-...+.+.|.+.|++|.++.++.-...+.
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 456899988887554 558999999999999999999877554443
No 247
>PRK05595 replicative DNA helicase; Provisional
Probab=51.32 E-value=1.9e+02 Score=27.48 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=32.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCCCCcc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFA-SRGVKASVITTPANGPY 49 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~-~rGH~Vt~~~~~~~~~~ 49 (383)
=+++..-|+.|=....+.+|..++ +.|+.|.+++-+...+.
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~ 244 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQ 244 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHH
Confidence 456677778899999999998876 56999999987765433
No 248
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=51.24 E-value=26 Score=34.06 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=28.3
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEe
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~ 147 (383)
.++++.+++.+||+||.+.. ...+|+++|||++.++
T Consensus 352 ~el~~~i~~~~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 352 LEVEDAIAEAAPELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHHhcCCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 35566677788999998764 6779999999988754
No 249
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=51.06 E-value=49 Score=27.22 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCCCEEE-ecCCC-chHHHHHHHhCCCcEEEec
Q 036871 108 QEPLEQLLRDHKPDCLV-ADIFF-PWATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 108 ~~~l~~~l~~~~~D~vi-~d~~~-~~~~~ia~~l~iP~v~~~~ 148 (383)
...+.+.+++.++|+|+ .+.-. ..|..+|.++|+|++..--
T Consensus 39 ~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK 81 (191)
T TIGR01744 39 GEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARK 81 (191)
T ss_pred HHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEe
Confidence 44444455567899998 44433 3688899999999998653
No 250
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=51.05 E-value=1.4e+02 Score=28.20 Aligned_cols=42 Identities=10% Similarity=0.081 Sum_probs=33.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFAS-RGVKASVITTPANGPYV 50 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~-rGH~Vt~~~~~~~~~~~ 50 (383)
=+++...|+.|=....+.++..++. .|+.|.+++.+...+.+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 4667777788999999999998876 59999999887765444
No 251
>PRK06321 replicative DNA helicase; Provisional
Probab=51.02 E-value=2.2e+02 Score=27.30 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=32.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCCCcc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFAS-RGVKASVITTPANGPY 49 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~-rGH~Vt~~~~~~~~~~ 49 (383)
=|++..-|+.|-....+.+|...+. .|..|.+++-+-..+.
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~q 269 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQ 269 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHH
Confidence 4667778888999999999999874 5999999887665433
No 252
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=50.68 E-value=21 Score=33.94 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=35.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccch
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVS 51 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~ 51 (383)
++.||++...++.+=. =...|.+.|.++||+|.++.++.-...+.
T Consensus 69 ~~k~IllgVtGsIAay-ka~~lvr~L~k~G~~V~VvmT~sA~~fv~ 113 (475)
T PRK13982 69 ASKRVTLIIGGGIAAY-KALDLIRRLKERGAHVRCVLTKAAQQFVT 113 (475)
T ss_pred CCCEEEEEEccHHHHH-HHHHHHHHHHhCcCEEEEEECcCHHHHhh
Confidence 4678999888865544 58899999999999999999887555444
No 253
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=50.33 E-value=1.9e+02 Score=26.33 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCC-eEEEEeCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGV-KASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH-~Vt~~~~~~ 45 (383)
++.||+++=.++-| ..+++.|++.|. +|+++-.+.
T Consensus 23 ~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCCc
Confidence 46689988777655 566889999998 777776644
No 254
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=50.26 E-value=1.3e+02 Score=23.95 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=29.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
-|.+++.++.|-....+++|-+.+.+|+.|.++.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5778888889989888999999999999998854
No 255
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=49.89 E-value=24 Score=34.16 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEec
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~ 148 (383)
.++++.+++.+||+||.+.+ ...+|+++|+|++.++.
T Consensus 354 ~ei~~~i~~~~pdliiG~~~---er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 354 QEVADAIAALEPELVLGTQM---ERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHHhcCCCEEEEChH---HHHHHHHcCCCEEEecC
Confidence 35666677789999999874 77889999999887543
No 256
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=49.86 E-value=35 Score=28.28 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
++||.+-..|+.|-..-|+.=|.+|.++|.+|++-.-+.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet 43 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET 43 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 679999999999999999999999999999998866543
No 257
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=49.58 E-value=1.1e+02 Score=26.09 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=52.3
Q ss_pred CCcEEEEEcCCCccc-HHH---HHHHHHHHHhCCCeEEEEeCCCCC--ccchhhHhhhhhcCCCcc--eEeeeCCCccCC
Q 036871 6 PQLHVFFFPFMAHGH-MIP---IVDMAKLFASRGVKASVITTPANG--PYVSKSVERANEMGIELD--VKTIKFPSVEAG 77 (383)
Q Consensus 6 ~~~~il~~~~~~~gH-~~p---~~~la~~L~~rGH~Vt~~~~~~~~--~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~ 77 (383)
++..|++.+..+... .-| +..|++.|.++|.+|.++.++... +...... .+.. ...+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~-------~~~~~~~~~~-------- 168 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA-------AGLQNPVINL-------- 168 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH-------TTHTTTTEEE--------
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH-------HhcccceEee--------
Confidence 355777877775532 223 699999999999888877776541 1111110 0111 1111
Q ss_pred CCCCCccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecch
Q 036871 78 LPEGCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGTS 150 (383)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~~ 150 (383)
.... . ..++..+++ ..|++|+- ..+...+|..+|+|.|.++...
T Consensus 169 --------~~~~-----~------------l~e~~ali~--~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 169 --------AGKT-----S------------LRELAALIS--RADLVIGN--DTGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp --------TTTS------------------HHHHHHHHH--TSSEEEEE--SSHHHHHHHHTT--EEEEESSS
T ss_pred --------cCCC-----C------------HHHHHHHHh--cCCEEEec--CChHHHHHHHHhCCEEEEecCC
Confidence 0000 0 123445555 77899954 3457899999999999987553
No 258
>PRK13604 luxD acyl transferase; Provisional
Probab=49.47 E-value=41 Score=30.00 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
+.+.+++.++..++-.-+..+|+.|+++|+.|..+=
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 446778888877887779999999999999987543
No 259
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=49.27 E-value=29 Score=33.61 Aligned_cols=36 Identities=11% Similarity=0.283 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEe
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~ 147 (383)
.++++.|++.+||+||.+.. ...+|+++|||++.++
T Consensus 364 ~ei~~~I~~~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhcCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 45566677789999999874 6677899999998765
No 260
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=49.15 E-value=1.5e+02 Score=24.41 Aligned_cols=104 Identities=16% Similarity=0.084 Sum_probs=61.4
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC-ccc-hhhHhhhhhcCCCcceEeeeCCCccCCCCCCCc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG-PYV-SKSVERANEMGIELDVKTIKFPSVEAGLPEGCE 83 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~-~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 83 (383)
++-.|.++...+.|-....+.+|-+.+.+|++|.++.--.-. ..= ...... -.++.+........ ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~----l~~v~~~~~g~~~~-------~~ 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF----GGGVEFHVMGTGFT-------WE 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc----CCCcEEEECCCCCc-------cc
Confidence 355889999999999999999999999999999888753321 000 111110 01455554421100 00
Q ss_pred cccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc
Q 036871 84 NLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP 130 (383)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~ 130 (383)
. ... . .-...+.......++.+.+.++|+||-|-...
T Consensus 90 ~--~~~-----~---e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 90 T--QDR-----E---RDIAAAREGWEEAKRMLADESYDLVVLDELTY 126 (191)
T ss_pred C--CCc-----H---HHHHHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 0 000 1 11223334455666777789999999997644
No 261
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=49.10 E-value=26 Score=33.92 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=25.4
Q ss_pred HHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEe
Q 036871 112 EQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 112 ~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~ 147 (383)
++++.+.++|++|.+.. +..+|+++|+|.+.+.
T Consensus 430 ~~~l~~~~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 430 RSLVFTEPVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHhhcCCCEEEECch---HHHHHHHcCCCEEEec
Confidence 34445568999998765 6889999999998754
No 262
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=48.86 E-value=23 Score=23.35 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCC
Q 036871 25 VDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 25 ~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+..|..|+++|++|+++-...
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567889999999999988654
No 263
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=48.67 E-value=19 Score=26.71 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 036871 21 MIPIVDMAKLFASRGVKASVITTPANGPYV 50 (383)
Q Consensus 21 ~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~ 50 (383)
+.|+..+.-...-|||++|++.+..+.+.+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 456667777777899999999987765543
No 264
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=48.24 E-value=41 Score=29.15 Aligned_cols=47 Identities=13% Similarity=-0.007 Sum_probs=40.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchhh
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSKS 53 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~ 53 (383)
..-+++.=.|+.|......+.+.+.+++|..|.+++.+...+.+.+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 44677777789999999999999999999999999998887666554
No 265
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=48.10 E-value=1.6e+02 Score=24.34 Aligned_cols=102 Identities=7% Similarity=0.103 Sum_probs=57.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCC-CCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcc
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPA-NGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCEN 84 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 84 (383)
+||+++.++..|.+.- |+++...- ..+|..+.+.. ...-++.+. ..++....+. ..++.
T Consensus 1 ~ki~VlaSG~GSNlqa---iida~~~~~~~a~i~~Visd~~~A~~lerA~------~~gIpt~~~~--------~k~~~- 62 (200)
T COG0299 1 KKIAVLASGNGSNLQA---IIDAIKGGKLDAEIVAVISDKADAYALERAA------KAGIPTVVLD--------RKEFP- 62 (200)
T ss_pred CeEEEEEeCCcccHHH---HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHH------HcCCCEEEec--------cccCC-
Confidence 3788998888887664 44444422 35677766655 332333321 2366554442 11111
Q ss_pred ccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc-hHHHHHHHhCCCcEE
Q 036871 85 LDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRLV 145 (383)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~-~~~~ia~~l~iP~v~ 145 (383)
. -+.+..++.+.|++.++|+|+.-.+.- .+..+-+++.=..+-
T Consensus 63 -----~-------------r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlN 106 (200)
T COG0299 63 -----S-------------REAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILN 106 (200)
T ss_pred -----C-------------HHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEe
Confidence 0 112456888899999999998666544 455555555545444
No 266
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=48.01 E-value=42 Score=29.82 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
||..|.|..=|+-|-..-...||.+|+++|++|.++-.+.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4667777766688899999999999999999999885444
No 267
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=47.85 E-value=1.2e+02 Score=25.70 Aligned_cols=46 Identities=11% Similarity=-0.089 Sum_probs=34.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchh
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSK 52 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (383)
..-+++.-.|+.|-..-..+++.+-+++|..|.+++.+...+.+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 4456777777888888777777766688999999998876554444
No 268
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=47.64 E-value=34 Score=25.41 Aligned_cols=37 Identities=14% Similarity=-0.034 Sum_probs=31.4
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
++....++..|......++..|.++|++|.++.....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCC
Confidence 5677777889999999999999999999999876443
No 269
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=47.34 E-value=18 Score=24.90 Aligned_cols=22 Identities=5% Similarity=0.228 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 036871 24 IVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 24 ~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+..+.++|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 5678999999999999887654
No 270
>PRK06849 hypothetical protein; Provisional
Probab=47.21 E-value=43 Score=31.04 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
++++||+.-..+ ..-+.+++.|.++||+|+++....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 356888874332 257899999999999999987754
No 271
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=47.11 E-value=45 Score=29.58 Aligned_cols=38 Identities=8% Similarity=-0.032 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCcc-c---HHHHHHHHHHHHhCCCeEEEEeC
Q 036871 6 PQLHVFFFPFMAHG-H---MIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 6 ~~~~il~~~~~~~g-H---~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+|+||+++..+..+ | +..-.+++++|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 46699999887543 3 56678899999999999988754
No 272
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=46.95 E-value=53 Score=27.94 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=38.8
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchh
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSK 52 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (383)
|.+|+++-=++-|--.-...++.+|++.||+|-.+..++-.+.-+.
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~ 46 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRL 46 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHH
Confidence 4688899889889888899999999999999999998776654433
No 273
>PHA02542 41 41 helicase; Provisional
Probab=46.90 E-value=2.7e+02 Score=26.74 Aligned_cols=42 Identities=10% Similarity=0.148 Sum_probs=34.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYV 50 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~ 50 (383)
=|++..-|+-|-....+.+|...++.|+.|.+++-+...+.+
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 466777889999999999999999999999998876654433
No 274
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=46.83 E-value=36 Score=27.04 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=21.9
Q ss_pred EEEEEeCCcccCCHhhHHHHHHHHHhC
Q 036871 288 VVYICFGSIANFTSAQLMEIATGLEAS 314 (383)
Q Consensus 288 vV~vs~GS~~~~~~~~~~~~~~a~~~~ 314 (383)
.||+++||..+.+.+.+...++.+++.
T Consensus 3 ~v~i~lGSN~g~~~~~l~~A~~~L~~~ 29 (159)
T PRK10239 3 VAYIAIGSNLASPLEQVNAALKALGDI 29 (159)
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcC
Confidence 699999999976777777777777765
No 275
>PRK08760 replicative DNA helicase; Provisional
Probab=46.67 E-value=1.8e+02 Score=27.98 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=33.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCCCCc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFAS-RGVKASVITTPANGP 48 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~-rGH~Vt~~~~~~~~~ 48 (383)
.-=|++..-|+.|-....+.+|...+. .|+.|.+++-+...+
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ 271 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSAS 271 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHH
Confidence 334667777889999999999998875 499999988766544
No 276
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=46.55 E-value=29 Score=28.93 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=30.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+=|.+.-.|+.|-.-....||++|.+++|+|..++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 3456666779999999999999999999998876653
No 277
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=45.60 E-value=31 Score=30.92 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
++||+++=.|+-| ..+|..|+++||+|+++.-..
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 4689999777665 346788999999999998754
No 278
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=45.56 E-value=89 Score=28.41 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEec
Q 036871 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~ 148 (383)
++..+++ +.|++|+- +.+...+|..+|+|.|.++.
T Consensus 254 el~ali~--~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 254 QAVILIA--ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred HHHHHHH--hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 4445555 67899965 34568899999999998865
No 279
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=45.22 E-value=51 Score=24.90 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=27.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
++++..+..++-.-+..+++.|+++|+.|..+..
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3566677677777899999999999999888754
No 280
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=45.14 E-value=63 Score=28.19 Aligned_cols=36 Identities=14% Similarity=0.270 Sum_probs=26.2
Q ss_pred HHhhcCCCCEEE-ecCCC-chHHHHHHHhCCCcEEEec
Q 036871 113 QLLRDHKPDCLV-ADIFF-PWATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 113 ~~l~~~~~D~vi-~d~~~-~~~~~ia~~l~iP~v~~~~ 148 (383)
+.+++.++|+|+ .+.-. +.|..+|..+|+|++..--
T Consensus 122 ~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vivRK 159 (268)
T TIGR01743 122 SVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIVRK 159 (268)
T ss_pred HHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEEEE
Confidence 344456899998 44433 3689999999999988653
No 281
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=45.12 E-value=27 Score=26.68 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=23.1
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 17 AHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
....+-..+-++..|.++||+|+++.++.-
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA 38 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNPAA 38 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-HHH
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCHHH
Confidence 444555678899999999999999998653
No 282
>PRK09165 replicative DNA helicase; Provisional
Probab=45.04 E-value=2.1e+02 Score=27.66 Aligned_cols=44 Identities=9% Similarity=-0.020 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhC---------------CCeEEEEeCCCCCccc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASR---------------GVKASVITTPANGPYV 50 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~r---------------GH~Vt~~~~~~~~~~~ 50 (383)
.-=+++..-|+.|-....+.+|...+.+ |..|.+++-+...+.+
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 3346777778889999999988888754 7889999877665443
No 283
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=44.88 E-value=27 Score=32.82 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEe
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~ 147 (383)
.++.+.+++.+||++|.... +..+|+++|||++.+.
T Consensus 359 ~e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 45666777889999998876 6778999999997643
No 284
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=44.84 E-value=35 Score=29.30 Aligned_cols=41 Identities=32% Similarity=0.406 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCEEE--ecCCCc----hHHHHHHHhCCCcEEEec
Q 036871 108 QEPLEQLLRDHKPDCLV--ADIFFP----WATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 108 ~~~l~~~l~~~~~D~vi--~d~~~~----~~~~ia~~l~iP~v~~~~ 148 (383)
.+.+.++|++.+.|+|| +++|.. -+..+|+..|||++.+--
T Consensus 55 ~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eR 101 (257)
T COG2099 55 AEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLER 101 (257)
T ss_pred HHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 34677889999999998 333322 256778999999998753
No 285
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=44.72 E-value=62 Score=24.06 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=32.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
||++.--++.|-......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888888999999999999999999999888766
No 286
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=44.54 E-value=41 Score=29.84 Aligned_cols=39 Identities=10% Similarity=-0.072 Sum_probs=28.7
Q ss_pred CcEEEEEcCC-CcccHH---HHHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFM-AHGHMI---PIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~-~~gH~~---p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+++|++++.+ +.=|-. .-..+.++|.++||+|.++....
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~ 46 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGE 46 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCc
Confidence 3489888855 333433 56899999999999999986543
No 287
>PRK07773 replicative DNA helicase; Validated
Probab=44.48 E-value=1.6e+02 Score=30.94 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=33.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASR-GVKASVITTPANGPYV 50 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~r-GH~Vt~~~~~~~~~~~ 50 (383)
=|++..-|+.|-....+.+|...+.+ |..|.+++-+...+.+
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 46777788999999999999988755 7889888876654433
No 288
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=44.19 E-value=76 Score=30.73 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchh
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSK 52 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (383)
..-+++.-.++.|-..-...++.+.+.+|..|.+++.+...+.+.+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~ 318 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIR 318 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHH
Confidence 4456666667889999999999999999999999998776554443
No 289
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=44.06 E-value=41 Score=30.97 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
++++|++. ++.|.+- ..|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVt--GgtGfIG--~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT--GAGGFIA--SHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE--CCccHHH--HHHHHHHHhCCCEEEEEEe
Confidence 34577755 6667665 6789999999999998864
No 290
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=43.88 E-value=2.1e+02 Score=25.37 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=57.2
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGC 82 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 82 (383)
++++||+++.++..+.+. +|.++..+. +++|.++.+... .+..... ..++.+..++.. .
T Consensus 87 ~~~~ri~vl~Sg~gsnl~---al~~~~~~~~~~~~i~~visn~~--~~~~lA~-----~~gIp~~~~~~~------~--- 147 (286)
T PRK06027 87 AERKRVVILVSKEDHCLG---DLLWRWRSGELPVEIAAVISNHD--DLRSLVE-----RFGIPFHHVPVT------K--- 147 (286)
T ss_pred ccCcEEEEEEcCCCCCHH---HHHHHHHcCCCCcEEEEEEEcCh--hHHHHHH-----HhCCCEEEeccC------c---
Confidence 467799999999855554 455554443 688887776432 1222111 236766665311 0
Q ss_pred ccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc-hHHHHHHHhCCCcEE
Q 036871 83 ENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRLV 145 (383)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~-~~~~ia~~l~iP~v~ 145 (383)
. .. . .....+.+.+++.++|+++.-.+.. ....+-+.+.-..+-
T Consensus 148 ~---~~------~----------~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiN 192 (286)
T PRK06027 148 E---TK------A----------EAEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIIN 192 (286)
T ss_pred c---cc------c----------hhHHHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCcee
Confidence 0 00 0 0133566778889999998765533 444455544444444
No 291
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=43.77 E-value=1e+02 Score=27.57 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCCEEEecCCCc-hHHHHHHHhCCCcEEEecch
Q 036871 110 PLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRLVFHGTS 150 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~d~~~~-~~~~ia~~l~iP~v~~~~~~ 150 (383)
++.+.+++.++|++|+=.+.. .-..+-+......+-++++.
T Consensus 69 ~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpsl 110 (309)
T PRK00005 69 EFLAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASL 110 (309)
T ss_pred HHHHHHHhcCcCEEEEehhhcccCHHHHhcCCCCEEEEeCcc
Confidence 445667888999999765432 34444455555566666553
No 292
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=43.15 E-value=51 Score=27.19 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=29.0
Q ss_pred cEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 8 LHVFFFPFM--AHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 8 ~~il~~~~~--~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
+|++.++.+ ..|-..-...||.+|+++|++|.++-....
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 455544443 557788899999999999999988766543
No 293
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=43.09 E-value=2.5e+02 Score=26.37 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=33.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCCCCccc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFA-SRGVKASVITTPANGPYV 50 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~-~rGH~Vt~~~~~~~~~~~ 50 (383)
=+++..-|+.|=....+.+|..++ +.|+.|.+++.+...+.+
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 466777778899999999998887 679999999877654433
No 294
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=42.92 E-value=47 Score=23.36 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 21 MIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 21 ~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+..+.+||..|.+||+-.++++..+
T Consensus 16 Vm~LqALa~~Le~rG~~AsCYtC~d 40 (105)
T PF08844_consen 16 VMSLQALAIVLERRGYLASCYTCGD 40 (105)
T ss_pred HHHHHHHHHHHHhCCceeEEEecCC
Confidence 4568899999999999999999854
No 295
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=42.78 E-value=35 Score=32.12 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=25.9
Q ss_pred HHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEe
Q 036871 113 QLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 113 ~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~ 147 (383)
+.+++.++|++|.... +..+|+++|||.+.+.
T Consensus 349 ~~l~~~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 349 EAVLEFEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred HHHhhCCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 4556789999998844 6779999999999854
No 296
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=42.63 E-value=1.1e+02 Score=27.04 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCCCC
Q 036871 25 VDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 25 ~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
.++|..|+++|++|.++..+...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46888999999999999987654
No 297
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=42.54 E-value=49 Score=28.68 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
|..|+++.=|+.|-..-...||.+|+++|++|-++=.+..
T Consensus 1 m~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 3467787667889999999999999999999998876554
No 298
>PRK12828 short chain dehydrogenase; Provisional
Probab=42.36 E-value=55 Score=27.44 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+..+|++ +++.|.+- ..+++.|+++|++|.++..
T Consensus 6 ~~k~vlI--tGatg~iG--~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 6 QGKVVAI--TGGFGGLG--RATAAWLAARGARVALIGR 39 (239)
T ss_pred CCCEEEE--ECCCCcHh--HHHHHHHHHCCCeEEEEeC
Confidence 3445444 45557664 7888999999999877765
No 299
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=42.30 E-value=48 Score=27.66 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=21.4
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 17 AHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
+.|++- .+||..|++.||+|++......
T Consensus 8 GtGniG--~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 8 GTGNIG--SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred ccChHH--HHHHHHHHhCCCeEEEecCCCh
Confidence 344443 6789999999999999977553
No 300
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=41.92 E-value=65 Score=26.38 Aligned_cols=41 Identities=29% Similarity=0.566 Sum_probs=28.2
Q ss_pred HHHHHHhhcCCCC--EEEecCCCc-hHHHHHHHhCCCcEEEecc
Q 036871 109 EPLEQLLRDHKPD--CLVADIFFP-WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 109 ~~l~~~l~~~~~D--~vi~d~~~~-~~~~ia~~l~iP~v~~~~~ 149 (383)
..+++.+++...+ ++|-.++.- .+..+|+++++|.|.+.|+
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 4555666665443 555555443 5788999999999988765
No 301
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=41.91 E-value=60 Score=26.37 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
++||++--+|+.|=.. -++|-+.|.+.|+++.++.+..-
T Consensus 2 ~~riivgisGASG~iy-gvrlLe~L~~~~~e~hlviS~~a 40 (191)
T COG0163 2 MKRIIVGISGASGAIY-GVRLLEVLRELGVETHLVISKAA 40 (191)
T ss_pred CcEEEEEEeccccHHH-HHHHHHHHHhcCceEEEEEcHHH
Confidence 4588888888877665 67889999999999999998653
No 302
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=41.70 E-value=40 Score=22.84 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCC
Q 036871 24 IVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 24 ~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
-+.+|..|+++|.+||++...+.
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHhCcEEEEEeccch
Confidence 46789999999999999987554
No 303
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=41.68 E-value=2e+02 Score=23.78 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=31.8
Q ss_pred CcEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 7 QLHVFFFPFM-AHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 7 ~~~il~~~~~-~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
|.++-++..| ..|-.--++.-++....+|-.|.++++.-+
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 4455555554 668999999999999999999999998543
No 304
>PRK09213 pur operon repressor; Provisional
Probab=41.60 E-value=77 Score=27.75 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=25.9
Q ss_pred HHhhcCCCCEEE-ecCCCc-hHHHHHHHhCCCcEEEec
Q 036871 113 QLLRDHKPDCLV-ADIFFP-WATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 113 ~~l~~~~~D~vi-~d~~~~-~~~~ia~~l~iP~v~~~~ 148 (383)
+.+.+.++|+|+ .+.-.. .|..+|..+|+|++..--
T Consensus 124 ~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 124 SAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred HHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 334456799998 444333 688999999999988653
No 305
>PRK06835 DNA replication protein DnaC; Validated
Probab=41.32 E-value=26 Score=31.66 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=34.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGP 48 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~ 48 (383)
...++|+-.++.|=..-..++|++|.++|+.|.+++...+.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 356777777788888889999999999999999999866533
No 306
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=41.21 E-value=75 Score=27.20 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=25.5
Q ss_pred HHHHHhhcCCCCEEEe-cCC-CchHHHHHHHhCCCcEEE
Q 036871 110 PLEQLLRDHKPDCLVA-DIF-FPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~-d~~-~~~~~~ia~~l~iP~v~~ 146 (383)
.+.+.+++.++|+|+. +.- ...|..+|..+|+|.+..
T Consensus 102 ~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 102 VVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred HHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 3333445567899984 333 336888999999998864
No 307
>PLN02240 UDP-glucose 4-epimerase
Probab=41.15 E-value=46 Score=30.14 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
+.+|++ +++.|.+- ..|++.|.++||+|+.+.
T Consensus 5 ~~~vlI--tGatG~iG--~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 5 GRTILV--TGGAGYIG--SHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCEEEE--ECCCChHH--HHHHHHHHHCCCEEEEEe
Confidence 346655 46667664 467899999999998885
No 308
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=40.86 E-value=81 Score=25.13 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCCCEEEecCCCc---hHHHHHHHhCCCcEEEecc
Q 036871 108 QEPLEQLLRDHKPDCLVADIFFP---WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 108 ~~~l~~~l~~~~~D~vi~d~~~~---~~~~ia~~l~iP~v~~~~~ 149 (383)
...+.+.+++.+||+|+.-.... .+..+|.++|.|++.-...
T Consensus 72 a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 72 APALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 44556666777899999776544 4788999999999876543
No 309
>PF01288 HPPK: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); InterPro: IPR000550 All organisms require reduced folate cofactors for the synthesis of a variety of metabolites. Most microorganisms must synthesise folate de novo because they lack the active transport system of higher vertebrate cells which allows these organisms to use dietary folates. Enzymes involved in folate biosynthesis are therefore targets for a variety of antimicrobial agents such as trimethoprim or sulphonamides. 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (2.7.6.3 from EC) (HPPK) catalyses the attachment of pyrophosphate to 6-hydroxymethyl-7,8-dihydropterin to form 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate. This is the first step in a three-step pathway leading to 7,8 dihydrofolate. Bacterial HPPK (gene folK or sulD) [] is a protein of 160 to 270 amino acids. In the lower eukaryote Pneumocystis carinii, HPPK is the central domain of a multifunctional folate synthesis enzyme (gene fas) [].; GO: 0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 2QX0_B 1RU1_B 2F65_A 1RU2_A 1EQ0_A 3ILJ_A 3HSJ_A 3HD1_A 1TMM_B 1RB0_A ....
Probab=40.82 E-value=41 Score=25.51 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.5
Q ss_pred EEEeCCcccCCHhhHHHHHHHHHhC
Q 036871 290 YICFGSIANFTSAQLMEIATGLEAS 314 (383)
Q Consensus 290 ~vs~GS~~~~~~~~~~~~~~a~~~~ 314 (383)
|||+||....+.+.+...++.+++.
T Consensus 1 ~i~LGSN~~~~~~~l~~A~~~L~~~ 25 (127)
T PF01288_consen 1 YISLGSNLGDREQNLRQALQALSAL 25 (127)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHCS
T ss_pred CEEEeCchHhHHHHHHHHHHHHhcC
Confidence 7999999777778888888888887
No 310
>PRK05636 replicative DNA helicase; Provisional
Probab=40.75 E-value=1.5e+02 Score=28.80 Aligned_cols=42 Identities=5% Similarity=0.022 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCCCCc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFA-SRGVKASVITTPANGP 48 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~-~rGH~Vt~~~~~~~~~ 48 (383)
.-=|++..-|+.|-....+.+|...+ +.|..|.+++.+-..+
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ 307 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKS 307 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHH
Confidence 33456777788898888889998776 4588898887766543
No 311
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.63 E-value=31 Score=32.00 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=27.9
Q ss_pred CcEEEEEcCC-Cc--ccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 7 QLHVFFFPFM-AH--GHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 7 ~~~il~~~~~-~~--gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
...+.+=|++ +. ||+.|+..| +.|+++||+|+++..
T Consensus 34 ~~Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLig 72 (401)
T COG0162 34 RVYIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIG 72 (401)
T ss_pred eEEEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEec
Confidence 4567777777 22 899988877 469999999998874
No 312
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=40.58 E-value=49 Score=26.73 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=23.4
Q ss_pred HHhhcCCCCEEEecCCCc-h-HHHHHHHhCCCcEEEe
Q 036871 113 QLLRDHKPDCLVADIFFP-W-ATDAAAKFGIPRLVFH 147 (383)
Q Consensus 113 ~~l~~~~~D~vi~d~~~~-~-~~~ia~~l~iP~v~~~ 147 (383)
+.|...+||+||...... . ....-++.|||++.+.
T Consensus 63 E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 63 ELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 334558999999865443 2 4444578899988753
No 313
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.42 E-value=32 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=26.5
Q ss_pred cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 14 PFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 14 ~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
|..+.+|+.-++.-+++|...|.+..++.+-+
T Consensus 57 PtCs~~HvPGyi~~a~elksKGVd~iicvSVn 88 (171)
T KOG0541|consen 57 PTCSSSHVPGYIEKADELKSKGVDEIICVSVN 88 (171)
T ss_pred CccccccCchHHHHHHHHHhcCCcEEEEEecC
Confidence 44478999999999999999999977766543
No 314
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.21 E-value=1.3e+02 Score=27.30 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=57.7
Q ss_pred cEEEEEcCCCc-cc----HHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCC
Q 036871 8 LHVFFFPFMAH-GH----MIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGC 82 (383)
Q Consensus 8 ~~il~~~~~~~-gH----~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 82 (383)
..|+|.|..+. .+ .--+..|++.|.++|.+|.+..+....+..+.... .+. ...
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~-------~~~--------------~~~ 234 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK-------GLP--------------NAV 234 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH-------hcC--------------Ccc
Confidence 56777777333 22 34589999999999988888887633332222211 010 000
Q ss_pred ccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecc
Q 036871 83 ENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~ 149 (383)
. ..... -..++.++++ ..|++|+- ..+...+|..+|.|.|.+...
T Consensus 235 ~-l~~k~-----------------sL~e~~~li~--~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 235 I-LAGKT-----------------SLEELAALIA--GADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred c-cCCCC-----------------CHHHHHHHHh--cCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 0 00100 0123334444 77888854 345688999999999998755
No 315
>PRK08462 biotin carboxylase; Validated
Probab=40.12 E-value=2.3e+02 Score=26.88 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
+++.|||+.--+.. -+++.+++.+.|++|+.+.+..+
T Consensus 2 ~~~k~ili~~~g~~-----~~~~~~~~~~~G~~~v~~~~~~d 38 (445)
T PRK08462 2 KEIKRILIANRGEI-----ALRAIRTIQEMGKEAIAIYSTAD 38 (445)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHHHHcCCCEEEEechhh
Confidence 34778998876643 56888888888999887766554
No 316
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=40.10 E-value=44 Score=30.05 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+++|.++=.+++| .+||+.|++.||+|++..-.+
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 3588888888888 578999999999999988643
No 317
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=39.98 E-value=32 Score=27.37 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
+..+|+++=++++||.. |.-|++.|++|++..-+..
T Consensus 3 ~~k~IAViGyGsQG~a~-----AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAH-----ALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp CTSEEEEES-SHHHHHH-----HHHHHHCC-EEEEEE-TTC
T ss_pred CCCEEEEECCChHHHHH-----HHHHHhCCCCEEEEecCCC
Confidence 45699999999999866 7789999999998887654
No 318
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=39.76 E-value=2.5e+02 Score=24.20 Aligned_cols=31 Identities=35% Similarity=0.407 Sum_probs=23.0
Q ss_pred CCCEEE-ecCCCc-hHHHHHHHhCCCcEEEecc
Q 036871 119 KPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 119 ~~D~vi-~d~~~~-~~~~ia~~l~iP~v~~~~~ 149 (383)
-||+++ .|+..- -+..=|.++|||+|.++-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 489876 666433 4666788999999998755
No 319
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=39.72 E-value=68 Score=27.15 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCe-EEEEeC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVK-ASVITT 43 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~-Vt~~~~ 43 (383)
|+-|+|.-.|..|--.--..|.++|++|||. ++.+..
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 4568899999999999999999999999986 444443
No 320
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=39.69 E-value=50 Score=31.05 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=25.6
Q ss_pred HHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEe
Q 036871 113 QLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 113 ~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~ 147 (383)
+.+++.++|++|... .+..+|+++|||.+.+.
T Consensus 344 ~~~~~~~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 344 AAVEEYRPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHhhcCCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 345667999999874 37889999999998754
No 321
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=39.47 E-value=69 Score=25.93 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
+..+++++-.++.|-..-..++++++.++|+.|.+++....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L 86 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDL 86 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCce
Confidence 45578888888888888899999999999999999986543
No 322
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=39.40 E-value=43 Score=26.58 Aligned_cols=109 Identities=18% Similarity=0.271 Sum_probs=59.2
Q ss_pred EEEEcCCCcccHHH----HHHHHHHHHhC-CCeEEEEeCCCCCccchh---hHhhhhhcCCCcc-eEeeeCCCccCCCCC
Q 036871 10 VFFFPFMAHGHMIP----IVDMAKLFASR-GVKASVITTPANGPYVSK---SVERANEMGIELD-VKTIKFPSVEAGLPE 80 (383)
Q Consensus 10 il~~~~~~~gH~~p----~~~la~~L~~r-GH~Vt~~~~~~~~~~~~~---~~~~~~~~~~~v~-~~~~~~~~~~~~~~~ 80 (383)
|+++.-...|.+++ ++..|++|++. |.+|+.++..+..+.... ... ..|+. ...+..+
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~-----~~G~d~v~~~~~~-------- 68 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALA-----KYGADKVYHIDDP-------- 68 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHH-----STTESEEEEEE-G--------
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhh-----hcCCcEEEEecCc--------
Confidence 44444444455555 67888999975 889888776532222111 111 13542 3333211
Q ss_pred CCccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc---hHHHHHHHhCCCcEEEec
Q 036871 81 GCENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP---WATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~---~~~~ia~~l~iP~v~~~~ 148 (383)
...... .+.....+.+.+++.+||+|+.-.... .+..+|.+++.|++.-..
T Consensus 69 ~~~~~~-----------------~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 69 ALAEYD-----------------PEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp GGTTC------------------HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred cccccC-----------------HHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 000000 011345666777778999999876554 367889999999887654
No 323
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=39.22 E-value=2e+02 Score=29.07 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=25.9
Q ss_pred HHHHHhhcCCCCEEEecCCCc-hHHHHHHHhCCCcEEEecc
Q 036871 110 PLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~d~~~~-~~~~ia~~l~iP~v~~~~~ 149 (383)
.+.+.|++.++|++|+-.+.. ....+-+.....++-++++
T Consensus 66 ~~~~~l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 66 LWVERIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHHHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCC
Confidence 345667888999998765533 3444555555566777665
No 324
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=38.99 E-value=1e+02 Score=30.07 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=50.6
Q ss_pred CCCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhh-----CCCCeEecCccc
Q 036871 284 QPNSVVYICFGSIANFTSAQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRM-----KGKGLIIRGWAP 358 (383)
Q Consensus 284 ~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~nv~~~~~~P 358 (383)
+++.+||+||+-.....++.+..=++-++..+--++|-.+++.. +++.+ +++... ..+++++.+-.|
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~----~~~~~----~l~~la~~~Gv~~eRL~f~p~~~ 498 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD----AEINA----RLRDLAEREGVDSERLRFLPPAP 498 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc----HHHHH----HHHHHHHHcCCChhheeecCCCC
Confidence 35779999999999999998888788888889999999988643 33332 333322 345677777766
Q ss_pred HHH
Q 036871 359 QVL 361 (383)
Q Consensus 359 q~~ 361 (383)
..+
T Consensus 499 ~~~ 501 (620)
T COG3914 499 NED 501 (620)
T ss_pred CHH
Confidence 544
No 325
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=38.89 E-value=64 Score=28.02 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCCCEEEec-----CCCc-hHHHHHHHhCCCcEEEec
Q 036871 108 QEPLEQLLRDHKPDCLVAD-----IFFP-WATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 108 ~~~l~~~l~~~~~D~vi~d-----~~~~-~~~~ia~~l~iP~v~~~~ 148 (383)
...+.+.+++.++|+||+. ..+. .+..+|+.||.|++.+..
T Consensus 100 a~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 100 AKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 4466778888999999853 3233 589999999999998654
No 326
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=38.86 E-value=79 Score=29.61 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=23.7
Q ss_pred EEEEcC-CCcccHHHHHHHHHHHHhCCCeEE
Q 036871 10 VFFFPF-MAHGHMIPIVDMAKLFASRGVKAS 39 (383)
Q Consensus 10 il~~~~-~~~gH~~p~~~la~~L~~rGH~Vt 39 (383)
|++-.. .+.|-..-.+.|.++|++||++|.
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 444333 366889999999999999999986
No 327
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=38.74 E-value=49 Score=29.63 Aligned_cols=39 Identities=10% Similarity=-0.126 Sum_probs=29.5
Q ss_pred EEEEEcCCC---cccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 9 HVFFFPFMA---HGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 9 ~il~~~~~~---~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
||+|+.-|. .-+.....+|.++.++|||+|.++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 2 KVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred eEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 677766552 234456789999999999999999987653
No 328
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=38.69 E-value=80 Score=21.62 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=27.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
+++...++.|-..-...++..|+++|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 445555677888889999999999999998776
No 329
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=38.57 E-value=42 Score=26.61 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
|.+|.|+=.+.-| ..+|+.|.++||+|++.-
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 4677877766544 578999999999998875
No 330
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=38.54 E-value=1.5e+02 Score=25.70 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=29.0
Q ss_pred CCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCcc
Q 036871 16 MAHGHMIPIVDMAKLFASRGVKASVITTPANGPY 49 (383)
Q Consensus 16 ~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~ 49 (383)
++-|-..--..||-.|+.-+|.|-++.+++....
T Consensus 28 GGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNl 61 (323)
T KOG2825|consen 28 GGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNL 61 (323)
T ss_pred CCcCccchhhHHHHHHhccCCceEEeecCcccch
Confidence 4668888899999999999999999998876543
No 331
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=38.26 E-value=1e+02 Score=23.47 Aligned_cols=40 Identities=8% Similarity=0.044 Sum_probs=34.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGP 48 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~ 48 (383)
+|++-+..+-+|-.--.-++..|..+|++|+.+......+
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e 40 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQE 40 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 4788889999999999999999999999999887655433
No 332
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=38.03 E-value=1e+02 Score=24.84 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCCEEEe-cCCC-chHHHHHHHhCCCcEEE
Q 036871 110 PLEQLLRDHKPDCLVA-DIFF-PWATDAAAKFGIPRLVF 146 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~-d~~~-~~~~~ia~~l~iP~v~~ 146 (383)
.+-+.+++.++|+|+. +.-. ..+..+|+.+++|++..
T Consensus 42 ~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~ 80 (175)
T PRK02304 42 ALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPV 80 (175)
T ss_pred HHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 3333344567899983 3333 36889999999998753
No 333
>PRK08939 primosomal protein DnaI; Reviewed
Probab=37.83 E-value=34 Score=30.55 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=34.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
...+.++-.++.|=..-+.++|.+|.++|+.|++++.+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI 196 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH
Confidence 34677777778888888999999999999999999876543
No 334
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.70 E-value=3.4e+02 Score=25.70 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=30.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHH-HhCCCeEEEEeCCCCCc
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLF-ASRGVKASVITTPANGP 48 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L-~~rGH~Vt~~~~~~~~~ 48 (383)
|+++=.++.|-..-...||..+ ..+|+.|.+++.+.++.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 4444444779999999999876 67899999999887654
No 335
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=37.70 E-value=66 Score=26.56 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=27.9
Q ss_pred cEEEEEcCCCcccHHHHHH-HHHHHHh-CCCeEEEEeCC
Q 036871 8 LHVFFFPFMAHGHMIPIVD-MAKLFAS-RGVKASVITTP 44 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~-la~~L~~-rGH~Vt~~~~~ 44 (383)
+||+++-...+||..-+.. +++.+.+ .|++|.++.-.
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 4788877777899887665 5566666 89999888754
No 336
>PRK07454 short chain dehydrogenase; Provisional
Probab=37.59 E-value=78 Score=26.70 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=22.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
|.++++ ++.|.+ =..++++|.++|++|+++.-
T Consensus 7 k~vlIt-G~sg~i--G~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 7 PRALIT-GASSGI--GKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CEEEEe-CCCchH--HHHHHHHHHHCCCEEEEEeC
Confidence 444444 344544 36789999999999888764
No 337
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=37.06 E-value=1e+02 Score=27.06 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=33.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
.-|+++..++.|-..-...||..|+++|+.|.+++.+.++
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 3455666668899999999999999999999999988764
No 338
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=36.88 E-value=1.3e+02 Score=22.16 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEe-------cCcccHHHhhc---CCCceee
Q 036871 302 AQLMEIATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLII-------RGWAPQVLILD---HEAVGGF 371 (383)
Q Consensus 302 ~~~~~~~~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~-------~~~~Pq~~lL~---~~~~~~f 371 (383)
+....+++++++++++.+......... +. .++ ..+.+.. ..|+-.+.|+. ...+ .
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d~~---s~-------~~~---~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~ 76 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPDTV---ST-------HVD---MADEAYFEPPGPSPESYLNIEAIIDIARKEGA--D 76 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGTT---GH-------HHH---HSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--S
T ss_pred HHHHHHHHHHHHhCCcceeccCchhcc---cc-------ccc---ccccceecCcchhhhhhccHHHHhhHhhhhcC--c
Confidence 446788999999999999888766432 11 111 1222222 24666666553 3344 8
Q ss_pred ccccccchhcc
Q 036871 372 VTHCGWNSTIE 382 (383)
Q Consensus 372 ItHGG~~s~~E 382 (383)
..|+|+|...|
T Consensus 77 ~i~pGyg~lse 87 (110)
T PF00289_consen 77 AIHPGYGFLSE 87 (110)
T ss_dssp EEESTSSTTTT
T ss_pred ccccccchhHH
Confidence 89999998876
No 339
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=36.77 E-value=60 Score=25.69 Aligned_cols=33 Identities=12% Similarity=-0.022 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+..+|+++=.+.- -...++.|.+.||+|+++.+
T Consensus 12 ~~~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcC
Confidence 4567777754432 36788999999999999964
No 340
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=36.74 E-value=36 Score=29.63 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=22.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+-++++.-+ |-+- ..+|+.|++|||+|.++.=
T Consensus 7 ~~~lITGAS-sGIG--~~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 7 KTALITGAS-SGIG--AELAKQLARRGYNLILVAR 38 (265)
T ss_pred cEEEEECCC-chHH--HHHHHHHHHCCCEEEEEeC
Confidence 344444333 3333 6899999999999998874
No 341
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=36.66 E-value=60 Score=30.71 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
++||+++=.+..| +++++.|.++|++|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 7799999999888 89999999999999998866554
No 342
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=36.66 E-value=1.4e+02 Score=20.60 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=30.6
Q ss_pred EEEEEcCCCc--ccHHHHHHHHHHHHhCCCeEEEEeC-CCCCccchh
Q 036871 9 HVFFFPFMAH--GHMIPIVDMAKLFASRGVKASVITT-PANGPYVSK 52 (383)
Q Consensus 9 ~il~~~~~~~--gH~~p~~~la~~L~~rGH~Vt~~~~-~~~~~~~~~ 52 (383)
+|+++|.... .+..-...+++.|.+.|..|.+-.. ......++.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~ 49 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFAD 49 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhH
Confidence 6788887653 4566788999999999999987543 333334433
No 343
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=36.62 E-value=1.1e+02 Score=26.06 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=33.8
Q ss_pred EEEEEcC-CCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCcc
Q 036871 9 HVFFFPF-MAHGHMIPIVDMAKLFASRGVKASVITTPANGPY 49 (383)
Q Consensus 9 ~il~~~~-~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~ 49 (383)
-|.|++. |+.|-..-.+.||.+|+++|-.|+++=.++++..
T Consensus 3 vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 3 VITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred eEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 3444444 4779999999999999999999999999887654
No 344
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=36.61 E-value=41 Score=31.93 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=25.5
Q ss_pred HHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEE
Q 036871 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~ 146 (383)
++.+.+++.++|++|..+. +..+|+++|||++.+
T Consensus 378 e~~~~i~~~~pdllig~s~---~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 378 EFEEILEKLKPDIIFSGIK---EKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHhcCCCEEEEcCc---chhhhhhcCCCeEec
Confidence 3344456678999997764 678999999998864
No 345
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=36.48 E-value=77 Score=27.21 Aligned_cols=38 Identities=13% Similarity=0.013 Sum_probs=29.9
Q ss_pred CcEEEEEcC-CCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 7 QLHVFFFPF-MAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 7 ~~~il~~~~-~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
|+.|++... |+-|-..-..+||..|+++|++|..+--.
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 345555544 47799999999999999999999887654
No 346
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=36.26 E-value=56 Score=25.01 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCC-eEEEEeC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGV-KASVITT 43 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH-~Vt~~~~ 43 (383)
...+++.++.-..+|.--+..+.++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4668888888888999999999999999997 5656655
No 347
>PRK05748 replicative DNA helicase; Provisional
Probab=36.25 E-value=3.8e+02 Score=25.43 Aligned_cols=44 Identities=7% Similarity=0.042 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCCCCccc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFA-SRGVKASVITTPANGPYV 50 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~-~rGH~Vt~~~~~~~~~~~ 50 (383)
.-=+++..-|+.|=....+.++...+ +.|+.|.+++.+...+.+
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 34567778889999999999999887 459999999877665443
No 348
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=36.24 E-value=1.8e+02 Score=26.46 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=26.6
Q ss_pred HHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEec
Q 036871 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~ 148 (383)
++.++++ +.|++|+- +.+...+|..+|+|.|.++.
T Consensus 255 el~ali~--~a~l~v~n--DSGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 255 ELGALID--HAQLFIGV--DSAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred HHHHHHH--hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 4445555 67899965 45578999999999998874
No 349
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=36.08 E-value=2.1e+02 Score=24.86 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=55.5
Q ss_pred EEEEEcCCCccc----HHHHHHHHHHHHhCCCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCCcc
Q 036871 9 HVFFFPFMAHGH----MIPIVDMAKLFASRGVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGCEN 84 (383)
Q Consensus 9 ~il~~~~~~~gH----~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 84 (383)
.|++.+..+... ..-+..|++.|.++|++|.++..++..+..+.... . ++ . .. ...
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~-------~-----~~-~------~~-~~~ 182 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAA-------A-----LG-G------PR-VVN 182 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHH-------h-----cC-C------Cc-ccc
Confidence 455555543221 34589999999999999988877654333222100 0 00 0 00 000
Q ss_pred ccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEEecc
Q 036871 85 LDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~~~~ 149 (383)
..... -..++..+++ +.|++|+-. .+...+|..+|+|.+.++..
T Consensus 183 ~~~~~-----------------~l~e~~~li~--~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 183 LAGKT-----------------SLRELAALLA--RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred CcCCC-----------------CHHHHHHHHH--hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 00000 0123344455 578988542 35788889999999988754
No 350
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=36.06 E-value=43 Score=27.94 Aligned_cols=44 Identities=7% Similarity=0.127 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccch
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVS 51 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~ 51 (383)
++.||++...++.+=.. ...|.+.|. +||+|.++.++.-.+++.
T Consensus 18 ~~k~IllgVtGSIAAyk-~~~lvr~L~-~g~~V~VvmT~~A~~FI~ 61 (209)
T PLN02496 18 RKPRILLAASGSVAAIK-FGNLCHCFS-EWAEVRAVVTKASLHFID 61 (209)
T ss_pred CCCEEEEEEeCHHHHHH-HHHHHHHhc-CCCeEEEEEChhHhhhcC
Confidence 45688888888755555 466888998 599999999887655554
No 351
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=36.02 E-value=89 Score=23.22 Aligned_cols=39 Identities=13% Similarity=-0.007 Sum_probs=28.7
Q ss_pred cEEEEEcCCCcccHHHHH---HHHHHHHhCCCeEEEEeCCCC
Q 036871 8 LHVFFFPFMAHGHMIPIV---DMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~---~la~~L~~rGH~Vt~~~~~~~ 46 (383)
++|+.++.+..|-...++ .|.++-.++||++.+=+....
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~~ 44 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGAL 44 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCc
Confidence 578888888777766654 567777788999998765443
No 352
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=36.02 E-value=95 Score=23.89 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=27.6
Q ss_pred EEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 12 FFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 12 ~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
++.++...-+.|..-++...+.+|++|++..+
T Consensus 8 Il~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 8 ILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 45566778899999999999999999998877
No 353
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=35.98 E-value=78 Score=25.56 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCCEEEecCCCc---hHHHHHHHhCCCcEEEec
Q 036871 108 QEPLEQLLRDHKPDCLVADIFFP---WATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 108 ~~~l~~~l~~~~~D~vi~d~~~~---~~~~ia~~l~iP~v~~~~ 148 (383)
.+.+.+.+++.+||+|+.-.... .+..+|.++|.|++.-..
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 34555566667899999776554 478899999999887543
No 354
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=35.81 E-value=82 Score=28.75 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=44.4
Q ss_pred CcEEEEEeCCcccCCHhhHHHHHHHHHhC-----CCcEEEEEecCCCCCCchhhhccCchhHHHhh-CCCCeEecCcccH
Q 036871 286 NSVVYICFGSIANFTSAQLMEIATGLEAS-----RRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRM-KGKGLIIRGWAPQ 359 (383)
Q Consensus 286 ~~vV~vs~GS~~~~~~~~~~~~~~a~~~~-----~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~~~~~~Pq 359 (383)
+.+|+++.+-.... .+.+..+++|+..+ +.++++...++.. .. +.+.+.. ..+++++.+.+++
T Consensus 197 ~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~------~~----~~~~~~~~~~~~v~~~~~~~~ 265 (365)
T TIGR00236 197 KRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV------VR----EPLHKHLGDSKRVHLIEPLEY 265 (365)
T ss_pred CCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH------HH----HHHHHHhCCCCCEEEECCCCh
Confidence 34666655432221 14466677777654 3455554332221 10 1121211 2457888776665
Q ss_pred H---HhhcCCCceeeccccccchhccC
Q 036871 360 V---LILDHEAVGGFVTHCGWNSTIEA 383 (383)
Q Consensus 360 ~---~lL~~~~~~~fItHGG~~s~~Ea 383 (383)
. .++.++++ +|+..|.. +.||
T Consensus 266 ~~~~~~l~~ad~--vv~~Sg~~-~~EA 289 (365)
T TIGR00236 266 LDFLNLAANSHL--ILTDSGGV-QEEA 289 (365)
T ss_pred HHHHHHHHhCCE--EEECChhH-HHHH
Confidence 4 56677777 99877643 5664
No 355
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=35.77 E-value=2.4e+02 Score=26.43 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=36.0
Q ss_pred HHhHHHHHHHhhcCCCCEEEecCCCc----hHHHHHH---HhCCCcEEEecchhhH
Q 036871 105 TKLQEPLEQLLRDHKPDCLVADIFFP----WATDAAA---KFGIPRLVFHGTSFFS 153 (383)
Q Consensus 105 ~~~~~~l~~~l~~~~~D~vi~d~~~~----~~~~ia~---~l~iP~v~~~~~~~~~ 153 (383)
+.+.+++.+.|++.+.|.||--+.+. |+..+++ +.|||.|++++.....
T Consensus 322 ~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~ 377 (431)
T TIGR01917 322 KQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIA 377 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHH
Confidence 34678888889999999998664322 5666664 5699999998875543
No 356
>cd00483 HPPK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is HPPK which catalyzes pyrophosphoryl transfer from ATP to 6-hydroxymethyl-7,8-dihydropterin (HP). The functional enzyme is a monomer. Mammals lack many of the enzymes in the folate pathway including, HPPK.
Probab=35.70 E-value=42 Score=25.53 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=20.4
Q ss_pred EEEEeCCcccCCHhhHHHHHHHHHhC
Q 036871 289 VYICFGSIANFTSAQLMEIATGLEAS 314 (383)
Q Consensus 289 V~vs~GS~~~~~~~~~~~~~~a~~~~ 314 (383)
+|+|+||..+.+.+.+...+..+++.
T Consensus 1 ~~i~LGSN~~~~~~~l~~A~~~L~~~ 26 (128)
T cd00483 1 VYLALGSNLGDRLANLRAALRALAAL 26 (128)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHHcC
Confidence 58999999976667777777777665
No 357
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=35.65 E-value=96 Score=26.11 Aligned_cols=38 Identities=8% Similarity=-0.045 Sum_probs=26.4
Q ss_pred cEEEEEcCC----CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 8 LHVFFFPFM----AHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 8 ~~il~~~~~----~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
.||+++..+ -.....=+..--..|.+.|++|+++++..
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 477777652 11234446666788999999999999754
No 358
>PLN02285 methionyl-tRNA formyltransferase
Probab=35.64 E-value=2.8e+02 Score=25.19 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=23.6
Q ss_pred HHHHHhhcCCCCEEEecCCCc-hHHHHHHHhCCCcEEEecc
Q 036871 110 PLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~d~~~~-~~~~ia~~l~iP~v~~~~~ 149 (383)
.+.+.+++.++|++|+=.+.. ....+-+.....++-++++
T Consensus 84 ~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpS 124 (334)
T PLN02285 84 DFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPS 124 (334)
T ss_pred HHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEecc
Confidence 445667888999998765433 3334444444445665554
No 359
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=35.64 E-value=75 Score=28.13 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=33.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
||++.-=|+.|-......||.+|+++|++|.++-.+...
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~ 40 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKH 40 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 588888889999999999999999999999888665543
No 360
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=35.63 E-value=67 Score=29.00 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=31.3
Q ss_pred EEEE--EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFF--FPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~--~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
=|.+ ++.++.|-.--...|++.|.++|++|.+++-..
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 3445 778899999999999999999999999888543
No 361
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=35.59 E-value=1.2e+02 Score=21.53 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
++.||++++..+-|--.-...+=+.+.++|.++.+-...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 456888777765443345577888888899988766553
No 362
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=35.49 E-value=1.1e+02 Score=24.53 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=30.4
Q ss_pred HHhHHHHHHHhhcCCCCEEEecCCCch---------------HHHHHHHhCCCcEEEecc
Q 036871 105 TKLQEPLEQLLRDHKPDCLVADIFFPW---------------ATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 105 ~~~~~~l~~~l~~~~~D~vi~d~~~~~---------------~~~ia~~l~iP~v~~~~~ 149 (383)
..+...+.+++++.+||.++.+..++. ...++...++|+.-+.|.
T Consensus 47 ~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 47 KQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 345678888899999999987765432 122355678887776544
No 363
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=35.43 E-value=1.2e+02 Score=24.85 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=25.5
Q ss_pred HHHHhhcCCCCEEEecCC--CchHHHHHHHhCCCcEEEe
Q 036871 111 LEQLLRDHKPDCLVADIF--FPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 111 l~~~l~~~~~D~vi~d~~--~~~~~~ia~~l~iP~v~~~ 147 (383)
+.+.+++.++|.|+.=.. .+.+..+|..+|+|++.+-
T Consensus 65 la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vR 103 (187)
T PRK13810 65 AALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVR 103 (187)
T ss_pred HHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEe
Confidence 334445568999985332 2368888999999988753
No 364
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=35.34 E-value=38 Score=32.29 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=26.3
Q ss_pred HHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEE
Q 036871 110 PLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 110 ~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~ 146 (383)
++.+.+++.++|++|.... +..+|+++|||++.+
T Consensus 386 e~~~~i~~~~pDllig~~~---~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 386 ELEEIIEKYKPDIILTGIR---EGELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHHhcCCCEEEecCC---cchhhhhcCCCEEEc
Confidence 4555567778999998765 567899999998874
No 365
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=35.31 E-value=44 Score=31.85 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=24.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
||+|.=-+-. =++-|.+|+++||+||++-....
T Consensus 2 rVai~GaG~A-----gL~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 2 RVAIAGAGLA-----GLAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred eEEEEcccHH-----HHHHHHHHHhCCCceEEEeccCc
Confidence 5666544433 36779999999999999987554
No 366
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=35.12 E-value=72 Score=27.67 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=31.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
.|++.-=|+-|-..-...||.+|+++|++|.++=.+..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 57777667889999999999999999999988865543
No 367
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=34.96 E-value=1.5e+02 Score=22.63 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=35.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
..||++...+..+|-.=-.-++..|...|++|........
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s 41 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQT 41 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCC
Confidence 5699999999999999999999999999999988776443
No 368
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=34.85 E-value=23 Score=31.23 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCeEEEEeCC
Q 036871 26 DMAKLFASRGVKASVITTP 44 (383)
Q Consensus 26 ~la~~L~~rGH~Vt~~~~~ 44 (383)
.+|..|+++||+|++++-.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~ 23 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARG 23 (293)
T ss_pred HHHHHHHhCCCcEEEEecH
Confidence 4788999999999999874
No 369
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=34.59 E-value=52 Score=29.11 Aligned_cols=30 Identities=13% Similarity=0.146 Sum_probs=23.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
||+++=.|+-| ..+|..|+++||+|+++..
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 66676665544 5678889999999999986
No 370
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=34.55 E-value=68 Score=25.45 Aligned_cols=34 Identities=9% Similarity=-0.051 Sum_probs=22.9
Q ss_pred CcEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEE
Q 036871 7 QLHVFFFPFM--AHGHMIPIVDMAKLFASRGVKASV 40 (383)
Q Consensus 7 ~~~il~~~~~--~~gH~~p~~~la~~L~~rGH~Vt~ 40 (383)
|.+|.++... ..-+..-...|++.|+++||.|..
T Consensus 1 ~~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~ 36 (159)
T TIGR00725 1 MVQIGVIGSSNKSEELYEIAYRLGKELAKKGHILIN 36 (159)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 3467766544 334455577889999999996554
No 371
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=34.47 E-value=75 Score=26.61 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=30.8
Q ss_pred ccCC-CCCCcEEEEEeCCcccCCHhhHHHHHHHHHhCCCcEE
Q 036871 279 WLNS-KQPNSVVYICFGSIANFTSAQLMEIATGLEASRRNFI 319 (383)
Q Consensus 279 ~l~~-~~~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~~~~vi 319 (383)
||++ .+++++|||..=.....+......+..+|...||+++
T Consensus 13 fLdPV~~~~rtVyv~vrNTSd~~~~l~~~i~~~L~~kGY~vv 54 (215)
T PF05818_consen 13 FLDPVAPSQRTVYVQVRNTSDKDINLESQIISALQAKGYQVV 54 (215)
T ss_pred EeCCCCcccceEEEEEecCCCCccchHHHHHHHHHHCCCEEe
Confidence 6665 2357899999877665555677788999999998864
No 372
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=34.12 E-value=26 Score=30.89 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=23.5
Q ss_pred cccCCHhhHHHHHHHHHhCCCcEEEEEecCCC
Q 036871 296 IANFTSAQLMEIATGLEASRRNFIWVVRRNKN 327 (383)
Q Consensus 296 ~~~~~~~~~~~~~~a~~~~~~~viw~~~~~~~ 327 (383)
.+..+++....+.+||++-..+.||...++..
T Consensus 43 ~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg 74 (284)
T PF02016_consen 43 LAGSDEERAEDLNEAFADPEIDAIWCARGGYG 74 (284)
T ss_dssp BSS-HHHHHHHHHHHHHSTTEEEEEES--SS-
T ss_pred cCCCHHHHHHHHHHHhcCCCCCEEEEeecccc
Confidence 34556778888999999988999999888764
No 373
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=34.09 E-value=78 Score=27.46 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=30.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
.|++.-=|+-|-..-...||.+|+++|++|.++=-+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 57777666778889999999999999999988754443
No 374
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=34.04 E-value=1e+02 Score=26.00 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=33.1
Q ss_pred CcEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFM-AHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~-~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+..|+|++=+ -.+...+.....++|.++|++|.++++.+
T Consensus 150 ~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP~~ 189 (222)
T PF05762_consen 150 RTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNPLP 189 (222)
T ss_pred CcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECCcc
Confidence 4467777777 67889999999999999999999999873
No 375
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=33.91 E-value=1.3e+02 Score=28.18 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=35.3
Q ss_pred HHhHHHHHHHhhcCCCCEEEecCCCc----hHHHHHH---HhCCCcEEEecchhh
Q 036871 105 TKLQEPLEQLLRDHKPDCLVADIFFP----WATDAAA---KFGIPRLVFHGTSFF 152 (383)
Q Consensus 105 ~~~~~~l~~~l~~~~~D~vi~d~~~~----~~~~ia~---~l~iP~v~~~~~~~~ 152 (383)
+.+.+++-+.|++.+.|.||--+.+. |+..+++ +.|||.|.+++....
T Consensus 322 ~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pi 376 (431)
T TIGR01918 322 KQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPI 376 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccH
Confidence 45678888889999999998664322 5666664 569999999876543
No 376
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.80 E-value=74 Score=30.03 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=25.9
Q ss_pred HHHHHhhcCC----CCEEEecCCCchHHHHHHHhCCCcEEEe
Q 036871 110 PLEQLLRDHK----PDCLVADIFFPWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 110 ~l~~~l~~~~----~D~vi~d~~~~~~~~ia~~l~iP~v~~~ 147 (383)
++++.+++.+ +|+||.+.. ...+|+++++|++.++
T Consensus 358 ~~~~~i~~~~~~~~~dliig~s~---~~~~a~~~~ip~i~~~ 396 (427)
T cd01971 358 AIGQSLRQSDFKYKPPIIFGSSW---ERDLAKELGGKILEVS 396 (427)
T ss_pred HHHHHHHhCCCCCCCCEEEechH---HHHHHHHcCCCeEEEe
Confidence 4444555544 999998865 6789999999998754
No 377
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=33.65 E-value=51 Score=31.48 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=22.3
Q ss_pred HHhhcCCCCEEEecCCCchHHHHHHHhCCCcE
Q 036871 113 QLLRDHKPDCLVADIFFPWATDAAAKFGIPRL 144 (383)
Q Consensus 113 ~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v 144 (383)
+.+++.++|++|.... +..+|+++|||++
T Consensus 391 ~~~~~~~pDliig~s~---~~~~A~klgiP~v 419 (461)
T TIGR01860 391 EVLDLIKPDVIFTGPR---VGELVKKLHIPYV 419 (461)
T ss_pred HHHHhcCCCEEEeCCc---chhhHhhcCCCEE
Confidence 4455678999998764 5668999999987
No 378
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=33.60 E-value=99 Score=26.37 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=22.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+.++++ ++.|.+- ..+++.|+++|++|.++.-.
T Consensus 8 ~~vlIt-Gasg~iG--~~la~~l~~~G~~v~~~~r~ 40 (262)
T PRK13394 8 KTAVVT-GAASGIG--KEIALELARAGAAVAIADLN 40 (262)
T ss_pred CEEEEE-CCCChHH--HHHHHHHHHCCCeEEEEeCC
Confidence 334444 4446554 56899999999999876543
No 379
>PLN02572 UDP-sulfoquinovose synthase
Probab=33.55 E-value=78 Score=30.04 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
++++|++. |+.|.+- ..|+++|+++||+|+++.
T Consensus 46 ~~k~VLVT--GatGfIG--s~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVI--GGDGYCG--WATALHLSKRGYEVAIVD 78 (442)
T ss_pred cCCEEEEE--CCCcHHH--HHHHHHHHHCCCeEEEEe
Confidence 34565443 7778776 567899999999999864
No 380
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=33.52 E-value=80 Score=23.52 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=27.2
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 036871 17 AHGHMIPIVDMAKLFASRGVKASVITTPANGP 48 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~ 48 (383)
..|....+..+++.+.++|..|..+|......
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~ 93 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESP 93 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSH
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCc
Confidence 66888999999999999999999999765533
No 381
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=33.31 E-value=83 Score=25.08 Aligned_cols=37 Identities=11% Similarity=0.371 Sum_probs=29.2
Q ss_pred cEEE-EEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 8 LHVF-FFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 8 ~~il-~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
++|+ |+-+-..|-..-+-+|.+.|.+||+.|.++-..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 3444 444557788999999999999999999887754
No 382
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=33.22 E-value=84 Score=24.70 Aligned_cols=79 Identities=13% Similarity=0.223 Sum_probs=41.8
Q ss_pred CCcEEEEEeCCcccCCHhhHHHHHHHHHhC-----CCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccH
Q 036871 285 PNSVVYICFGSIANFTSAQLMEIATGLEAS-----RRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQ 359 (383)
Q Consensus 285 ~~~vV~vs~GS~~~~~~~~~~~~~~a~~~~-----~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq 359 (383)
.++.+++..|.... .+....+++++..+ +.-.++.++.... ... +-...+.....+++++..++++
T Consensus 13 ~~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~----~~~---~~~~~~~~~~~~~i~~~~~~~~ 83 (172)
T PF00534_consen 13 DKKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEY----KKE---LKNLIEKLNLKENIIFLGYVPD 83 (172)
T ss_dssp TTSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCCH----HHH---HHHHHHHTTCGTTEEEEESHSH
T ss_pred CCCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEccccc----ccc---cccccccccccccccccccccc
Confidence 45678888888764 24455555555543 2233444442211 000 1112222235678999899983
Q ss_pred H---HhhcCCCceeeccc
Q 036871 360 V---LILDHEAVGGFVTH 374 (383)
Q Consensus 360 ~---~lL~~~~~~~fItH 374 (383)
. +++..+++ +|+.
T Consensus 84 ~~l~~~~~~~di--~v~~ 99 (172)
T PF00534_consen 84 DELDELYKSSDI--FVSP 99 (172)
T ss_dssp HHHHHHHHHTSE--EEE-
T ss_pred ccccccccccee--cccc
Confidence 3 46778888 7765
No 383
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=33.16 E-value=88 Score=25.96 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCCCEEEecCCC------chHHHHHHHhCCCcEEEe
Q 036871 108 QEPLEQLLRDHKPDCLVADIFF------PWATDAAAKFGIPRLVFH 147 (383)
Q Consensus 108 ~~~l~~~l~~~~~D~vi~d~~~------~~~~~ia~~l~iP~v~~~ 147 (383)
.+.+.+.+++.++|+|+.-... ..+..+|.++|.|.+.-+
T Consensus 97 a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv 142 (202)
T cd01714 97 AKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYV 142 (202)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceE
Confidence 4455666777779999977655 368889999999977644
No 384
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=33.03 E-value=64 Score=28.63 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGP 48 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~ 48 (383)
+..+|+++-.+++||.+ |.-|.+.|.+|++-.-+....
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s 54 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSS 54 (338)
T ss_pred cCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchh
Confidence 56699999999999987 667899999999887665443
No 385
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=32.99 E-value=83 Score=26.06 Aligned_cols=32 Identities=16% Similarity=0.018 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVI 41 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~ 41 (383)
.+.++|++.-++. .=..+|+.|.+.||+|++.
T Consensus 26 l~gk~v~I~G~G~-----vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 26 LEGKTVAVQGLGK-----VGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEE
Confidence 4556888877764 3367899999999999854
No 386
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=32.96 E-value=44 Score=31.38 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=23.7
Q ss_pred HHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEE
Q 036871 112 EQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 112 ~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~ 146 (383)
.+.+++.++|++|.... +..+|+++|||++.+
T Consensus 351 ~~~~~~~~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 351 FEILEMLKPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHhcCCCEEEecCc---cchhhhhcCCCEEec
Confidence 34455678999988765 446899999998874
No 387
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=32.93 E-value=90 Score=27.33 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
|.+|.|.-=|+-|-..-...||.+|+++|++|-++=.+.
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dp 39 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDP 39 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCC
Confidence 456788866688999999999999999999988875443
No 388
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=32.75 E-value=1.3e+02 Score=24.53 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=25.1
Q ss_pred HHHHhhcCCCCEEE-ecCCCc-hHHHHHHHhCCCcEEE
Q 036871 111 LEQLLRDHKPDCLV-ADIFFP-WATDAAAKFGIPRLVF 146 (383)
Q Consensus 111 l~~~l~~~~~D~vi-~d~~~~-~~~~ia~~l~iP~v~~ 146 (383)
+.+.+ +.++|+|+ .|.-.. .+..+|..+++|++..
T Consensus 44 l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~ 80 (187)
T PRK12560 44 IIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMA 80 (187)
T ss_pred HHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEe
Confidence 33444 56899999 444433 6888999999998764
No 389
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.74 E-value=94 Score=26.70 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=28.8
Q ss_pred CCCCCCC-cEEEEEcCCCcc-cHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 1 MGSKVPQ-LHVFFFPFMAHG-HMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 1 m~~~~~~-~~il~~~~~~~g-H~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
|++.+++ -|+++++-.+.| -+- .++|+.|+++|++|.+..-
T Consensus 2 ~~~~~~~~~k~~lItGas~g~GIG--~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 2 MQPLLPLAGKRGLVVGIANEQSIA--WGCARAFRALGAELAVTYL 44 (258)
T ss_pred CCcccccCCCEEEEECCCCCCcHH--HHHHHHHHHcCCEEEEEeC
Confidence 5555543 378888877642 333 7899999999999877643
No 390
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=32.63 E-value=58 Score=29.44 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=30.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
|.=++.|+.|-.-....|++.|.++|++|.+++-..
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 445678899999999999999999999999888643
No 391
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=32.63 E-value=1.6e+02 Score=20.82 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=23.2
Q ss_pred cEEEEEeCCcccCCHhhHHHHHHHHHhC--CCcEEEEE
Q 036871 287 SVVYICFGSIANFTSAQLMEIATGLEAS--RRNFIWVV 322 (383)
Q Consensus 287 ~vV~vs~GS~~~~~~~~~~~~~~a~~~~--~~~viw~~ 322 (383)
++|+++.||........+..+.+.+++. ...|-+.+
T Consensus 1 ~ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~af 38 (101)
T cd03416 1 ALLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAF 38 (101)
T ss_pred CEEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 3788888888754445667777777654 34555554
No 392
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=32.61 E-value=56 Score=28.86 Aligned_cols=31 Identities=6% Similarity=0.031 Sum_probs=24.2
Q ss_pred EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 13 FPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 13 ~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+-+|+.|-+- ..|+++|.++||+|..+....
T Consensus 4 LVtG~tGfiG--~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 4 LVTGGAGFIG--SHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred EEEcCcccHH--HHHHHHHHhCCCeEEEEeCCC
Confidence 3345567766 889999999999999988643
No 393
>PRK07060 short chain dehydrogenase; Provisional
Probab=32.27 E-value=75 Score=26.81 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=24.5
Q ss_pred CCCCCC--CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 1 MGSKVP--QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 1 m~~~~~--~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
|..+++ ..++++ +++.|.+- ..+++.|+++||+|+++..
T Consensus 1 ~~~~~~~~~~~~lI--tGa~g~iG--~~~a~~l~~~g~~V~~~~r 41 (245)
T PRK07060 1 MNMAFDFSGKSVLV--TGASSGIG--RACAVALAQRGARVVAAAR 41 (245)
T ss_pred CCcccccCCCEEEE--eCCcchHH--HHHHHHHHHCCCEEEEEeC
Confidence 444433 234444 34445443 5678899999999888764
No 394
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=32.06 E-value=59 Score=27.71 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=27.4
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 15 FMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 15 ~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
.++.|-..-+..|+++|.++|+.|.+.|+-..
T Consensus 5 vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m 36 (232)
T TIGR03172 5 VGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRM 36 (232)
T ss_pred EcCCcHHHHHHHHHHHHHHCCCeEEEECCccc
Confidence 34578899999999999999999998887554
No 395
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=32.05 E-value=50 Score=29.88 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=25.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+||.|+=.|.-| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 488888776655 45688999999999998753
No 396
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=31.98 E-value=60 Score=23.58 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 22 IPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 22 ~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
.|.+.|+++|.++|.+|.+.=+--
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v 40 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYV 40 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTS
T ss_pred CHHHHHHHHHHHCCCEEEEECCcc
Confidence 688999999999999988776643
No 397
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=31.90 E-value=2.8e+02 Score=22.45 Aligned_cols=35 Identities=20% Similarity=0.125 Sum_probs=29.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
--|.+++..+.|-..-.+.+|-+.+.+|++|.++.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQ 40 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQ 40 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 46778888888999999999999999999996654
No 398
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.85 E-value=1.1e+02 Score=25.95 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=20.6
Q ss_pred CCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 16 MAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 16 ~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
++.|.+- ..+++.|+++||+|+++.-.
T Consensus 12 Gasg~iG--~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 12 GASSGIG--EGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred CCCChHH--HHHHHHHHHCCCEEEEEeCC
Confidence 5556554 68899999999998877654
No 399
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=31.85 E-value=52 Score=28.76 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=22.5
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 15 FMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 15 ~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+++.|.+- ..++++|.++||+|+.++-..
T Consensus 5 tGatG~iG--~~vv~~L~~~g~~V~~~~R~~ 33 (285)
T TIGR03649 5 TGGTGKTA--SRIARLLQAASVPFLVASRSS 33 (285)
T ss_pred EcCCChHH--HHHHHHHHhCCCcEEEEeCCC
Confidence 46777765 567789999999999888543
No 400
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=31.72 E-value=72 Score=28.50 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=30.7
Q ss_pred EEEEEcC-CCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 9 HVFFFPF-MAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 9 ~il~~~~-~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
|++|+.. |+-|-..--.++|..++++|++|-++++++..
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 4555554 47788999999999999999999999987754
No 401
>PRK12829 short chain dehydrogenase; Provisional
Probab=31.69 E-value=85 Score=26.83 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+..++++. ++.|.+- ..+++.|.++||+|+++.-
T Consensus 10 ~~~~vlIt--Ga~g~iG--~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 10 DGLRVLVT--GGASGIG--RAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CCCEEEEe--CCCCcHH--HHHHHHHHHCCCEEEEEeC
Confidence 34455543 4456664 7889999999999877764
No 402
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=31.68 E-value=2.1e+02 Score=26.61 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=41.8
Q ss_pred CcEEEEEeCCcccCCHhhHHHHHHHHHhC-----CCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHH
Q 036871 286 NSVVYICFGSIANFTSAQLMEIATGLEAS-----RRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQV 360 (383)
Q Consensus 286 ~~vV~vs~GS~~~~~~~~~~~~~~a~~~~-----~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~ 360 (383)
++..+++.|.+.. .+.+..+++|+..+ +.++.|.+-++... ++.+. +-.++....++|....|+++.
T Consensus 229 ~~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~--~~~l~----~~~~~~~~~~~V~f~G~v~~~ 300 (407)
T cd04946 229 DTLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGPL--EDTLK----ELAESKPENISVNFTGELSNS 300 (407)
T ss_pred CCEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH--HHHHH----HHHHhcCCCceEEEecCCChH
Confidence 4566777787763 22344455555443 23666765444321 01111 111111234578899999987
Q ss_pred Hhh---cCCCceeecccc
Q 036871 361 LIL---DHEAVGGFVTHC 375 (383)
Q Consensus 361 ~lL---~~~~~~~fItHG 375 (383)
++. ..+++.+||...
T Consensus 301 e~~~~~~~~~~~v~v~~S 318 (407)
T cd04946 301 EVYKLYKENPVDVFVNLS 318 (407)
T ss_pred HHHHHHhhcCCCEEEeCC
Confidence 644 444444477543
No 403
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=31.67 E-value=87 Score=23.37 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+...|++++++.. +...+..+++|.+.|.+++++..
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 4557888888765 45578899999999999887664
No 404
>PHA02857 monoglyceride lipase; Provisional
Probab=31.46 E-value=79 Score=27.32 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
...++++.+|..+|..-+..+++.|+++|+.|..+-.
T Consensus 24 ~~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D~ 60 (276)
T PHA02857 24 PKALVFISHGAGEHSGRYEELAENISSLGILVFSHDH 60 (276)
T ss_pred CCEEEEEeCCCccccchHHHHHHHHHhCCCEEEEccC
Confidence 3468888888888999999999999999999876544
No 405
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=31.44 E-value=85 Score=25.63 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=21.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
||.++ +.||+- +.+|..|+++||+|+.+-..
T Consensus 2 ~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVI---GLGYVG--LPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-
T ss_pred EEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCC
Confidence 56666 345554 67889999999999988654
No 406
>PLN02650 dihydroflavonol-4-reductase
Probab=31.38 E-value=67 Score=29.18 Aligned_cols=29 Identities=14% Similarity=0.025 Sum_probs=21.3
Q ss_pred EcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 13 FPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 13 ~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+-+++.|.+- ..|+++|+++||+|+.+.-
T Consensus 9 LVTGatGfIG--s~l~~~L~~~G~~V~~~~r 37 (351)
T PLN02650 9 CVTGASGFIG--SWLVMRLLERGYTVRATVR 37 (351)
T ss_pred EEeCCcHHHH--HHHHHHHHHCCCEEEEEEc
Confidence 3445666665 4578999999999987754
No 407
>PLN02778 3,5-epimerase/4-reductase
Probab=31.29 E-value=75 Score=28.18 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=21.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVI 41 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~ 41 (383)
+||++ +|+.|.+- ..|++.|.++||+|++.
T Consensus 10 ~kiLV--tG~tGfiG--~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 10 LKFLI--YGKTGWIG--GLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CeEEE--ECCCCHHH--HHHHHHHHhCCCEEEEe
Confidence 36554 46666665 45788999999999864
No 408
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.26 E-value=1e+02 Score=25.86 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=21.4
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
.++++ ++.|.+ =..+++.|+++|++|+++.-.
T Consensus 9 ~vlVt-G~sg~i--G~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 9 NALIT-GAGRGI--GRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred EEEEE-cCCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 33443 344433 467888999999999887643
No 409
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.24 E-value=73 Score=28.45 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
.++||.|+=.+..| .++|+.|+++||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 35689888666555 578999999999999887543
No 410
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=31.08 E-value=99 Score=25.70 Aligned_cols=34 Identities=18% Similarity=0.065 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEE
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASV 40 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~ 40 (383)
+...+++-+...|-...+..+|+.|+++|+.|.+
T Consensus 13 ~~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 13 PRPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp SEEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred CCCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEe
Confidence 3455666677888888899999999999977654
No 411
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=30.97 E-value=1.1e+02 Score=26.10 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=28.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
|.++-....|-..-+..|+++|.++|++|.++-+
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4455556778899999999999999999999853
No 412
>PRK08506 replicative DNA helicase; Provisional
Probab=30.93 E-value=4.9e+02 Score=25.02 Aligned_cols=43 Identities=7% Similarity=-0.041 Sum_probs=34.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCcc
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPY 49 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~ 49 (383)
.-=|++..-|+.|-....+.+|...++.|+.|.+++.+-..+.
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~q 234 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQ 234 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHH
Confidence 3356677778889999999999999889999999987765443
No 413
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=30.91 E-value=61 Score=31.11 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEE
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLV 145 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~ 145 (383)
.++.+.+++.++|++|.. ..+..+|+++|||++-
T Consensus 383 ~e~~~~i~~~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 383 RELYKMLKEAKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHHhhcCCCEEEec---CchhhhhhhcCCCEEE
Confidence 344555666789999987 3467889999999873
No 414
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=30.74 E-value=3.3e+02 Score=24.08 Aligned_cols=105 Identities=6% Similarity=0.090 Sum_probs=57.8
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCCCCccchhhHhhhhhcCCCcceEeeeCCCccCCCCCCC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITTPANGPYVSKSVERANEMGIELDVKTIKFPSVEAGLPEGC 82 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 82 (383)
.+++||+++.++..+.+ .+|.++..+. +++|.++.+..-. +..... ..++.+..++.. +
T Consensus 87 ~~~~ri~vl~Sg~g~nl---~al~~~~~~~~~~~~i~~visn~~~--~~~lA~-----~~gIp~~~~~~~------~--- 147 (286)
T PRK13011 87 AARPKVLIMVSKFDHCL---NDLLYRWRIGELPMDIVGVVSNHPD--LEPLAA-----WHGIPFHHFPIT------P--- 147 (286)
T ss_pred ccCceEEEEEcCCcccH---HHHHHHHHcCCCCcEEEEEEECCcc--HHHHHH-----HhCCCEEEeCCC------c---
Confidence 35679999999964444 4555554443 6898887653211 122111 136766665311 0
Q ss_pred ccccccchhhhHHHHHHHHHHHHHhHHHHHHHhhcCCCCEEEecCCCc-hHHHHHHHhCCCcEEEe
Q 036871 83 ENLDAITNEVNKELIVKFVGATTKLQEPLEQLLRDHKPDCLVADIFFP-WATDAAAKFGIPRLVFH 147 (383)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~D~vi~d~~~~-~~~~ia~~l~iP~v~~~ 147 (383)
.. . . .....+.+.|++.++|+++.-.+.. ....+-+.+.-..+-++
T Consensus 148 ~~---~------~----------~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiH 194 (286)
T PRK13011 148 DT---K------P----------QQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIH 194 (286)
T ss_pred Cc---h------h----------hhHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEec
Confidence 00 0 0 0123466778888999998665543 45555555555555544
No 415
>PRK04148 hypothetical protein; Provisional
Probab=30.70 E-value=53 Score=25.24 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+..+|+.+=.| .| ..+|..|++.||+|+.+=..+
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCH
Confidence 34578877776 33 346889999999998876544
No 416
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=30.66 E-value=1e+02 Score=28.57 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
++++|++. ++.|-+- ..++++|.++||+|+.++-
T Consensus 59 ~~~kVLVt--GatG~IG--~~l~~~Ll~~G~~V~~l~R 92 (390)
T PLN02657 59 KDVTVLVV--GATGYIG--KFVVRELVRRGYNVVAVAR 92 (390)
T ss_pred CCCEEEEE--CCCcHHH--HHHHHHHHHCCCEEEEEEe
Confidence 45566654 5556553 6788999999999988774
No 417
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=30.58 E-value=53 Score=28.74 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCC
Q 036871 25 VDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 25 ~~la~~L~~rGH~Vt~~~~~~ 45 (383)
.+|..+|.+.||+||+++=..
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~ 32 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRP 32 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCC
Confidence 578889999999999999544
No 418
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=30.57 E-value=1.3e+02 Score=25.16 Aligned_cols=46 Identities=9% Similarity=-0.070 Sum_probs=32.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCCCCccchhh
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASR-GVKASVITTPANGPYVSKS 53 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~r-GH~Vt~~~~~~~~~~~~~~ 53 (383)
.-+++.-.++.|-..-..+++.+-+++ |..|.+++.+...+.+.+.
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~ 66 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIEN 66 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHH
Confidence 356666677888888888888777777 9999999987776555444
No 419
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=30.57 E-value=1.4e+02 Score=21.68 Aligned_cols=36 Identities=6% Similarity=0.016 Sum_probs=25.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
.||++++..+-|--.-...+-+.+.++|.++.+-..
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~ 37 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAI 37 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEe
Confidence 478877777554446677777777888998876554
No 420
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=30.57 E-value=62 Score=33.51 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+++.+|+|+=.+..| |.+||+.|.++|++|+..-.
T Consensus 2 ~~~~~i~viG~G~sG----~salA~~L~~~G~~V~~sD~ 36 (809)
T PRK14573 2 MKSLFYHFIGIGGIG----MSALAHILLDRGYSVSGSDL 36 (809)
T ss_pred CCcceEEEEEecHHh----HHHHHHHHHHCCCeEEEECC
Confidence 456689999888766 78889999999999987553
No 421
>PLN02214 cinnamoyl-CoA reductase
Probab=30.52 E-value=86 Score=28.43 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
++++|++ +|+.|.+- ..|+++|.++||+|+.+.-
T Consensus 9 ~~~~vlV--TGatGfIG--~~l~~~L~~~G~~V~~~~r 42 (342)
T PLN02214 9 AGKTVCV--TGAGGYIA--SWIVKILLERGYTVKGTVR 42 (342)
T ss_pred CCCEEEE--ECCCcHHH--HHHHHHHHHCcCEEEEEeC
Confidence 3445544 45556544 5688899999999988764
No 422
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=30.34 E-value=52 Score=25.50 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCeEEEEeCCC
Q 036871 26 DMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 26 ~la~~L~~rGH~Vt~~~~~~ 45 (383)
-+|..|+++||+|++++...
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 46889999999999999866
No 423
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=30.29 E-value=64 Score=29.33 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=30.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
|.=++.|+.|-.--...|++.|.++|++|.+++-..
T Consensus 61 VGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 96 (338)
T PRK01906 61 VGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGY 96 (338)
T ss_pred ECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCC
Confidence 344678899999999999999999999999888543
No 424
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=30.25 E-value=47 Score=28.14 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCC
Q 036871 25 VDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 25 ~~la~~L~~rGH~Vt~~~~~~ 45 (383)
..+|+.|.++||+|+++-...
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCH
Confidence 679999999999999887644
No 425
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=30.19 E-value=32 Score=32.84 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEE
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~ 146 (383)
.++++.+++.++|++|.... +..+|+++|||++.+
T Consensus 394 ~el~~~i~~~~pDl~ig~~~---~~~~a~k~gIP~~~~ 428 (466)
T TIGR01282 394 YEFEEFVEKLKPDLVGSGIK---EKYVFQKMGVPFRQM 428 (466)
T ss_pred HHHHHHHHHhCCCEEEecCC---ccceeeecCCCcccc
Confidence 45667777789999998876 577899999998653
No 426
>PRK10490 sensor protein KdpD; Provisional
Probab=29.87 E-value=74 Score=33.37 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
++||.+-..|+-|-..-|+.-|.+|.++|++|++-.-+.
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~ 62 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVET 62 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeC
Confidence 679999999999999999999999999999998765443
No 427
>PRK11914 diacylglycerol kinase; Reviewed
Probab=29.86 E-value=1.4e+02 Score=26.61 Aligned_cols=41 Identities=17% Similarity=0.048 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCCccc---HHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 5 VPQLHVFFFPFMAHGH---MIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH---~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
++|.|++++-.|..|. ..-...+.+.|.++|++++++.+..
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 4567888888876554 3345678889999999988766544
No 428
>PRK04940 hypothetical protein; Provisional
Probab=29.84 E-value=1.7e+02 Score=23.80 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCCEEEecCCCc-hHHHHHHHhCCCcEEEecc
Q 036871 119 KPDCLVADIFFP-WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 119 ~~D~vi~d~~~~-~~~~ia~~l~iP~v~~~~~ 149 (383)
+++++|-.++.- ++.-+|++.|+|.|.+.|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 456777666544 7899999999999998775
No 429
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=29.84 E-value=54 Score=28.89 Aligned_cols=32 Identities=13% Similarity=0.302 Sum_probs=26.4
Q ss_pred cccCCHhhHHHHHHHHHhCCCcEEEEEecCCC
Q 036871 296 IANFTSAQLMEIATGLEASRRNFIWVVRRNKN 327 (383)
Q Consensus 296 ~~~~~~~~~~~~~~a~~~~~~~viw~~~~~~~ 327 (383)
.+..+++....+.+|+.+-..+.||...++..
T Consensus 43 ~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g 74 (282)
T cd07025 43 LAGTDEERAADLNAAFADPEIKAIWCARGGYG 74 (282)
T ss_pred cCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCC
Confidence 34566778888999999999999999988764
No 430
>PRK06756 flavodoxin; Provisional
Probab=29.73 E-value=1.1e+02 Score=23.72 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=26.4
Q ss_pred cEEEEEcCCCcccHHHH-HHHHHHHHhCCCeEEEEeC
Q 036871 8 LHVFFFPFMAHGHMIPI-VDMAKLFASRGVKASVITT 43 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~-~~la~~L~~rGH~Vt~~~~ 43 (383)
++|+++=...+||..-+ ..+++.|.++|++|.+.-.
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 46666656677887764 5578888889999987654
No 431
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=29.71 E-value=78 Score=30.18 Aligned_cols=35 Identities=34% Similarity=0.316 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCCCEEEecCCCchHHHHHHHhCCCcEEE
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~~ 146 (383)
.++.+.+++.+||++|.... ...+|++++||++.+
T Consensus 385 ~e~~~~i~~~~pDl~ig~~~---~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 385 RELLKLLLEYKADLLIAGGK---ERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHHHhhcCCCEEEEccc---hHHHHHhcCCCEEEc
Confidence 34555566678999997633 567888999998864
No 432
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=29.64 E-value=61 Score=31.41 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=23.6
Q ss_pred HHhhcCCCCEEEecCCCchHHHHHHHhCCCcEE
Q 036871 113 QLLRDHKPDCLVADIFFPWATDAAAKFGIPRLV 145 (383)
Q Consensus 113 ~~l~~~~~D~vi~d~~~~~~~~ia~~l~iP~v~ 145 (383)
+.+++.++|++|.... +..+|+++|||++-
T Consensus 392 ~~l~~~~~Dllig~s~---~~~~A~k~gIP~ld 421 (513)
T TIGR01861 392 EAMEMLKPDIILTGKR---PGEVSKKMRVPYLN 421 (513)
T ss_pred HHHHhcCCCEEEecCc---cchhHhhcCCCEEE
Confidence 4456678999998876 45789999999865
No 433
>PRK10566 esterase; Provisional
Probab=29.51 E-value=94 Score=26.32 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=27.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
..+++.++..|+-..+..+++.|+++|+.|...-.
T Consensus 28 p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~ 62 (249)
T PRK10566 28 PTVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDA 62 (249)
T ss_pred CEEEEeCCCCcccchHHHHHHHHHhCCCEEEEecC
Confidence 46666677777766788899999999999876554
No 434
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=29.47 E-value=2.3e+02 Score=27.40 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=23.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeC
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASR--GVKASVITT 43 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~r--GH~Vt~~~~ 43 (383)
+|||++-.+++.|. |+.+|++. |++|.++-.
T Consensus 1 mkVLviG~Ggreha-----l~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREHA-----LAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHHH-----HHHHHHhCCCCCEEEEEEC
Confidence 48999888888774 57777776 999877754
No 435
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.45 E-value=1.1e+02 Score=29.00 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+..+|+++- .|. .-+ ++|+.|+++||+|++.....
T Consensus 4 ~~k~v~iiG---~g~-~G~-~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVG---AGV-SGL-ALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEEC---CCH-HHH-HHHHHHHHCCCEEEEEeCCc
Confidence 445776663 244 334 99999999999999886643
No 436
>PRK12744 short chain dehydrogenase; Provisional
Probab=29.14 E-value=2.5e+02 Score=23.89 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=21.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+.++++.++ |-+ =..+|+.|+++|++|.++..
T Consensus 9 k~vlItGa~-~gI--G~~~a~~l~~~G~~vv~i~~ 40 (257)
T PRK12744 9 KVVLIAGGA-KNL--GGLIARDLAAQGAKAVAIHY 40 (257)
T ss_pred cEEEEECCC-chH--HHHHHHHHHHCCCcEEEEec
Confidence 445555443 333 46789999999999776653
No 437
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=29.07 E-value=1.1e+02 Score=23.77 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=26.8
Q ss_pred EEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 036871 11 FFFP-FMAHGHMIPIVDMAKLFASRGVKASVITTPANGP 48 (383)
Q Consensus 11 l~~~-~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~ 48 (383)
.+++ .++.|-..-...||..|+++|++|.++-......
T Consensus 4 ~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~ 42 (157)
T PF13614_consen 4 AVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSP 42 (157)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCC
Confidence 3444 5677888889999999999999987777665543
No 438
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=29.05 E-value=1.1e+02 Score=26.74 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=31.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
..|.|+-=|+.|-..-...||.+|+++|++|-++=.+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq 40 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPK 40 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 356777556778999999999999999999988854443
No 439
>PRK10125 putative glycosyl transferase; Provisional
Probab=28.88 E-value=91 Score=29.14 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=28.7
Q ss_pred EEEEEc--CCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFFFP--FMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~~~--~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
|||.+- .+..|-=.-+..|++.|.++||+|.++....
T Consensus 2 kil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~ 40 (405)
T PRK10125 2 NILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYG 40 (405)
T ss_pred eEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecC
Confidence 666444 3356777779999999999999999888643
No 440
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=28.84 E-value=91 Score=29.11 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=20.3
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 17 AHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+.|-+ =.++|++|.++|++|+++...
T Consensus 212 SSG~~--G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 212 SSGKM--GYALARAAARRGADVTLVSGP 237 (399)
T ss_pred CcchH--HHHHHHHHHHCCCEEEEeCCC
Confidence 34443 468999999999999998754
No 441
>PRK07308 flavodoxin; Validated
Probab=28.70 E-value=1.2e+02 Score=23.39 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCcccHHH-HHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFMAHGHMIP-IVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p-~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
|.+|++.+ .+||..= ...|++.|.++|++|.+.-...
T Consensus 3 ~~~IvY~S--~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~ 40 (146)
T PRK07308 3 LAKIVYAS--MTGNTEEIADIVADKLRELGHDVDVDECTT 40 (146)
T ss_pred eEEEEEEC--CCchHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 45666655 5677655 5567888888999988765433
No 442
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.59 E-value=1.5e+02 Score=23.53 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCCCEEEecCCCc----------hHHHHHHHhCCCcEEEec
Q 036871 118 HKPDCLVADIFFP----------WATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 118 ~~~D~vi~d~~~~----------~~~~ia~~l~iP~v~~~~ 148 (383)
.+||+|++....- -+..+|+++|+|++-.+.
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 6899999865321 367889999999886543
No 443
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=28.59 E-value=92 Score=26.23 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCccc--HHHHHHHHHHHHhCCCeEE
Q 036871 7 QLHVFFFPFMAHGH--MIPIVDMAKLFASRGVKAS 39 (383)
Q Consensus 7 ~~~il~~~~~~~gH--~~p~~~la~~L~~rGH~Vt 39 (383)
.-+++++..+.+|| ..+|..+|++|.+.|..+.
T Consensus 32 s~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~f 66 (269)
T KOG4667|consen 32 STEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAF 66 (269)
T ss_pred CceEEEEeeccccccchHHHHHHHHHHHhcCceEE
Confidence 44789999999998 6689999999999998754
No 444
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=28.58 E-value=70 Score=29.40 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHHHHhC-CCeEEEEeCC
Q 036871 17 AHGHMIPIVDMAKLFASR-GVKASVITTP 44 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~r-GH~Vt~~~~~ 44 (383)
=+|++...-+||+.|+++ |++|++.+.+
T Consensus 10 NfGDIGVcWRLArqLa~e~g~~VrLwvDd 38 (374)
T PF10093_consen 10 NFGDIGVCWRLARQLAAEHGQQVRLWVDD 38 (374)
T ss_pred CCcchHHHHHHHHHHHHHhCCeEEEEECC
Confidence 469999999999999998 9999999864
No 445
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=28.57 E-value=1.3e+02 Score=24.09 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=20.6
Q ss_pred HHHHHHHHHh---CCCeEEEEeCCCCCccchh
Q 036871 24 IVDMAKLFAS---RGVKASVITTPANGPYVSK 52 (383)
Q Consensus 24 ~~~la~~L~~---rGH~Vt~~~~~~~~~~~~~ 52 (383)
...|+++|.+ .+.+|.++.++.....+++
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~ 43 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKK 43 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh
Confidence 3456677666 4678999999887666555
No 446
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=28.55 E-value=75 Score=29.87 Aligned_cols=32 Identities=19% Similarity=0.093 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
++||.|+=.+.-| ..+|..|+++||+|+.+-.
T Consensus 3 ~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~ 34 (415)
T PRK11064 3 FETISVIGLGYIG-----LPTAAAFASRQKQVIGVDI 34 (415)
T ss_pred ccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeC
Confidence 4588888554433 5679999999999998865
No 447
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=28.43 E-value=1.1e+02 Score=26.07 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=21.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+.++++-++ |-+- ..+++.|+++|++|+++.-
T Consensus 9 k~vlVtGas-~gIG--~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 9 KVVVVTGAA-QGIG--RGVALRAAAEGARVVLVDR 40 (260)
T ss_pred CEEEEeCCC-chHH--HHHHHHHHHCCCEEEEEeC
Confidence 445554443 4333 6789999999999987654
No 448
>CHL00194 ycf39 Ycf39; Provisional
Probab=28.27 E-value=70 Score=28.59 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=23.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+|++ +|+.|.+- ..|+++|.++||+|+.++-
T Consensus 2 kIlV--tGatG~iG--~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 2 SLLV--IGATGTLG--RQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred EEEE--ECCCcHHH--HHHHHHHHHCCCeEEEEEc
Confidence 4554 46667655 5688999999999998874
No 449
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=28.25 E-value=56 Score=29.22 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=26.0
Q ss_pred cccCCHhhHHHHHHHHHhCCCcEEEEEecCCC
Q 036871 296 IANFTSAQLMEIATGLEASRRNFIWVVRRNKN 327 (383)
Q Consensus 296 ~~~~~~~~~~~~~~a~~~~~~~viw~~~~~~~ 327 (383)
.+..+++....+.+||.+-..+.||...++..
T Consensus 47 ~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 78 (308)
T cd07062 47 LSASPEERAEELMAAFADPSIKAIIPTIGGDD 78 (308)
T ss_pred ccCCHHHHHHHHHHHhcCCCCCEEEECCcccC
Confidence 34556778888999999988999999988764
No 450
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=28.20 E-value=1.3e+02 Score=26.90 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=35.1
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
..+.-|++++++..|--+-+.+++-.|+.+|+-|..+-..+
T Consensus 115 ~~k~PvvvFSHGLggsRt~YSa~c~~LAShG~VVaavEHRD 155 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLGGSRTLYSAYCTSLASHGFVVAAVEHRD 155 (399)
T ss_pred CCCccEEEEecccccchhhHHHHhhhHhhCceEEEEeeccc
Confidence 35778999999999999999999999999999877666533
No 451
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=28.19 E-value=1.5e+02 Score=26.91 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
+...|++..-++.|-..-...||..|+++|++|.++-.+...
T Consensus 30 ~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~ 71 (329)
T cd02033 30 KTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKS 71 (329)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecc
Confidence 344566777778888888999999999999999998765443
No 452
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=28.15 E-value=1.8e+02 Score=23.26 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=26.2
Q ss_pred hHHHHHHHhhcCCCCEEEe-cCC-CchHHHHHHHhCCCcEE
Q 036871 107 LQEPLEQLLRDHKPDCLVA-DIF-FPWATDAAAKFGIPRLV 145 (383)
Q Consensus 107 ~~~~l~~~l~~~~~D~vi~-d~~-~~~~~~ia~~l~iP~v~ 145 (383)
....+.+.+++.++|+|+. +.- +..+..+|+.+++|++.
T Consensus 34 ~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~ 74 (169)
T TIGR01090 34 LIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVP 74 (169)
T ss_pred HHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEE
Confidence 3444444555667899884 332 34688899999999764
No 453
>PRK07576 short chain dehydrogenase; Provisional
Probab=28.09 E-value=89 Score=26.95 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=19.4
Q ss_pred CCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 16 MAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 16 ~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
++.|.+- ..++++|+++||+|+++.-
T Consensus 16 GasggIG--~~la~~l~~~G~~V~~~~r 41 (264)
T PRK07576 16 GGTSGIN--LGIAQAFARAGANVAVASR 41 (264)
T ss_pred CCCchHH--HHHHHHHHHCCCEEEEEeC
Confidence 4555544 6788999999999887753
No 454
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=28.04 E-value=1e+02 Score=29.33 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=25.3
Q ss_pred HHHHHhhc--CCCCEEEecCCCchHHHHHHHhCCCcEEE
Q 036871 110 PLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 110 ~l~~~l~~--~~~D~vi~d~~~~~~~~ia~~l~iP~v~~ 146 (383)
++++.+++ .++|++|.... +..+|+++|+|++.+
T Consensus 370 e~~~~i~~~~~~~dliig~s~---~~~~A~~~gip~~~~ 405 (454)
T cd01973 370 ELEKRIKNKGLELDLILGHSK---GRYIAIDNNIPMVRV 405 (454)
T ss_pred HHHHHHHhcCCCCCEEEECCc---cHHHHHHcCCCEEEe
Confidence 34445554 35999998764 688999999998875
No 455
>PRK10749 lysophospholipase L2; Provisional
Probab=28.04 E-value=1.1e+02 Score=27.52 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=28.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
.++++-++..+|..-+..++..|.++|++|..+--
T Consensus 55 ~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~ 89 (330)
T PRK10749 55 RVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDH 89 (330)
T ss_pred cEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcC
Confidence 45666677789999999999999999999865543
No 456
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.99 E-value=1.6e+02 Score=21.35 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
|.||++++..+-|--.-....-++..++|-++++-.-+
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s 38 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYS 38 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEec
Confidence 46899888888787777788888888899998876543
No 457
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=27.97 E-value=85 Score=31.48 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
+.||++++.--.-.+.-|-+....|+++||+|+++.
T Consensus 369 ~~rvLv~spHPDDevi~~GGTlarl~~~G~~V~vv~ 404 (652)
T PRK02122 369 PKRVIIFSPHPDDDVISMGGTFRRLVEQGHDVHVAY 404 (652)
T ss_pred CceEEEEEeCCCchHhhhHHHHHHHHHCCCcEEEEE
Confidence 346665444444578888889999999999998754
No 458
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=27.92 E-value=81 Score=28.84 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=24.9
Q ss_pred CcccHHHHHHHHHHHHh-CCCeEEEEeCC
Q 036871 17 AHGHMIPIVDMAKLFAS-RGVKASVITTP 44 (383)
Q Consensus 17 ~~gH~~p~~~la~~L~~-rGH~Vt~~~~~ 44 (383)
=+|++...-+||+.|++ +|++|.+-+.+
T Consensus 10 NyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 10 NYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred CCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 47999999999999997 69999998864
No 459
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=27.89 E-value=58 Score=27.61 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=23.3
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
|-+++..+.|-+- .++|++|+++|++|+++.
T Consensus 16 VR~itN~SSGgIG--~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 16 VRSITNHSTGHLG--KIITETFLSAGHEVTLVT 46 (227)
T ss_pred ceeecCCcccHHH--HHHHHHHHHCCCEEEEEc
Confidence 4456666666443 688999999999999875
No 460
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=27.76 E-value=60 Score=30.03 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=25.1
Q ss_pred EEEEEcCC-C--cccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFM-A--HGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~-~--~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
-+.+-|++ . -||+.|+..+ +.|++.||+|+++..
T Consensus 34 y~G~dPTg~~lHlGh~v~l~~l-~~lq~~G~~~~ilig 70 (377)
T TIGR00234 34 YVGFDPTAPSLHLGHLVPLLKL-RDFQQAGHEVIVLLG 70 (377)
T ss_pred EEeeCCCCCCccHHHHHHHHHH-HHHHHCCCcEEEEEe
Confidence 44566666 2 2899987665 689999999988774
No 461
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=27.76 E-value=2.1e+02 Score=24.53 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=34.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCC-CeEEEEeCCCCCccchh
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRG-VKASVITTPANGPYVSK 52 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rG-H~Vt~~~~~~~~~~~~~ 52 (383)
++|++.-=++.|-..-...|+++|.++| ++|.++-++++...-..
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~ 46 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEA 46 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHh
Confidence 3788888888888886666699999986 99999998886554333
No 462
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=27.75 E-value=79 Score=28.28 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
|+||+|+=.+.-| ..+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 3578888665544 45788899999999988753
No 463
>PRK00170 azoreductase; Reviewed
Probab=27.53 E-value=1.3e+02 Score=24.64 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=20.8
Q ss_pred cEEEEE-cCCCc--ccHHH-HHHHHHHHHhC--CCeEEEEeC
Q 036871 8 LHVFFF-PFMAH--GHMIP-IVDMAKLFASR--GVKASVITT 43 (383)
Q Consensus 8 ~~il~~-~~~~~--gH~~p-~~~la~~L~~r--GH~Vt~~~~ 43 (383)
+||+++ .+|-. |...- ...+.+.|.++ ||+|+++--
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL 43 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDL 43 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 466544 44432 33322 33566677777 999987754
No 464
>PRK12458 glutathione synthetase; Provisional
Probab=27.52 E-value=65 Score=29.30 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 21 MIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 21 ~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
.....+|..+-++|||+|.++.+....
T Consensus 10 ~~st~~l~~~a~~rgh~~~~~~~~~l~ 36 (338)
T PRK12458 10 TDTTLRLAHEAVNRGHEVAYTTPGDLT 36 (338)
T ss_pred CchHHHHHHHHHHcCCEEEEEecCcEE
Confidence 345788999999999999999987763
No 465
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.52 E-value=1.2e+02 Score=25.95 Aligned_cols=39 Identities=10% Similarity=0.052 Sum_probs=26.5
Q ss_pred CCCCCCCcEEEEEcCCCc-ccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 1 MGSKVPQLHVFFFPFMAH-GHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 1 m~~~~~~~~il~~~~~~~-gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
|...++. |+++++-.+. +-+- .++|++|+++|++|.+..
T Consensus 1 ~~~~l~~-k~~lItGas~~~gIG--~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 1 MSGILSG-KKIVVMGVANKRSIA--WGCAQAIKDQGATVIYTY 40 (252)
T ss_pred CccccCC-CEEEEeCCCCCCchH--HHHHHHHHHCCCEEEEec
Confidence 4454443 5666666652 2333 789999999999988764
No 466
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=27.52 E-value=1.7e+02 Score=20.94 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCCCEEEecCCCch--HHHHHHHhCCCcE
Q 036871 109 EPLEQLLRDHKPDCLVADIFFPW--ATDAAAKFGIPRL 144 (383)
Q Consensus 109 ~~l~~~l~~~~~D~vi~d~~~~~--~~~ia~~l~iP~v 144 (383)
.++.+.++..++|+||.|.-... ..-+.+.+|++++
T Consensus 47 eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 47 EEIKELIEELDADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 45666777789999998875443 5778888998864
No 467
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=27.47 E-value=80 Score=26.84 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 21 MIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 21 ~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
+-+.+.+.+.|.++||.|.++|...-
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 45688999999999999999998653
No 468
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.28 E-value=86 Score=27.63 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
..+|.++=.+..| ..+|..|+++||+|+++...
T Consensus 3 ~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 3 IKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred ccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 3478888666555 56788999999999998754
No 469
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=27.23 E-value=1e+02 Score=29.04 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=30.4
Q ss_pred CcEEEEEcCC--Cccc-HHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFM--AHGH-MIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~--~~gH-~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
..||+++|.- +-.+ ......|++.|.+||.+|.|..++-
T Consensus 306 A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 306 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4578888765 3334 4568999999999999999999864
No 470
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.21 E-value=91 Score=30.09 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 5 VPQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 5 ~~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
.++.+|+|+=.+..| + .+|+.|.++|++|+..-..
T Consensus 5 ~~~~~i~v~G~G~sG----~-s~a~~L~~~G~~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESG----L-AMARWCARHGARLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhH----H-HHHHHHHHCCCEEEEEcCC
Confidence 345689998888766 3 4999999999999876543
No 471
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=27.21 E-value=1.1e+02 Score=29.19 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=25.1
Q ss_pred HHHHHhhc--CCCCEEEecCCCchHHHHHHHhCCCcEEE
Q 036871 110 PLEQLLRD--HKPDCLVADIFFPWATDAAAKFGIPRLVF 146 (383)
Q Consensus 110 ~l~~~l~~--~~~D~vi~d~~~~~~~~ia~~l~iP~v~~ 146 (383)
++++.+++ .++|++|.... +..+|+++|||++.+
T Consensus 377 ~l~~~i~~~~~~~Dliig~s~---~~~~a~k~gip~~~~ 412 (461)
T TIGR02931 377 ELESRIKNQGLELDLILGHSK---GRFISIDYNIPMVRV 412 (461)
T ss_pred HHHHHHHhcCCCCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 34444553 47999998764 688999999998875
No 472
>CHL00175 minD septum-site determining protein; Validated
Probab=27.20 E-value=1.3e+02 Score=26.36 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=31.2
Q ss_pred CCcEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFM--AHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~--~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
++.+++.+..+ +-|=..-...||.+|+++|++|.++-.+.
T Consensus 13 ~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 13 TMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 35566666654 66888889999999999999988886554
No 473
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=27.10 E-value=1e+02 Score=27.15 Aligned_cols=80 Identities=10% Similarity=0.127 Sum_probs=48.3
Q ss_pred CcEEEEEeCCcccCCHhhHHHHHHHHHhC--CCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccHHHhh
Q 036871 286 NSVVYICFGSIANFTSAQLMEIATGLEAS--RRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQVLIL 363 (383)
Q Consensus 286 ~~vV~vs~GS~~~~~~~~~~~~~~a~~~~--~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq~~lL 363 (383)
+..|.+....-....++..+.+++.+++. +++|+.....+. .+... +|+.+.++.....+ +..-+.|+|
T Consensus 45 ~k~IW~~W~QG~e~aP~~Vk~ci~s~~k~~~~~~Vi~lt~~Ni-----~~Yv~-~P~~i~~k~~~g~i---~~a~~SDil 115 (276)
T PF05704_consen 45 EKIIWVCWWQGEENAPEIVKKCINSWRKNAPDYEVILLTEDNI-----KDYVD-IPDFILEKYEKGKI---SPAHFSDIL 115 (276)
T ss_pred CCcEEEEECCCccccCHHHHHHHHHHHHHCCCCeEEEEChHHH-----HHHcC-CchhHHHHHHcCCC---chhHHHHHH
Confidence 34688888765543478888888888875 566665543332 23322 67655444333322 344567777
Q ss_pred cCCCceeecccccc
Q 036871 364 DHEAVGGFVTHCGW 377 (383)
Q Consensus 364 ~~~~~~~fItHGG~ 377 (383)
++.|+..|||.
T Consensus 116 ---R~~LL~~yGGv 126 (276)
T PF05704_consen 116 ---RLALLYKYGGV 126 (276)
T ss_pred ---HHHHHHHcCcE
Confidence 55668888884
No 474
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=27.08 E-value=1.8e+02 Score=21.23 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVIT 42 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~ 42 (383)
++.||++++..+-|--.-+..+-++..++|.++.+-.
T Consensus 2 ~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A 38 (106)
T PRK10499 2 EKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEA 38 (106)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3568998888877766656677777788898877644
No 475
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=27.07 E-value=1.2e+02 Score=26.48 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=29.7
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
.|.+.-=|+-|-......||.+|+++|++|.++-.+.
T Consensus 3 ~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dp 39 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDP 39 (273)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence 5666644577889999999999999999998885443
No 476
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.01 E-value=1.1e+02 Score=26.25 Aligned_cols=36 Identities=31% Similarity=0.335 Sum_probs=23.3
Q ss_pred HHhhcCCCCEEEecCCCch---HHHHHHHhCCCcEEEec
Q 036871 113 QLLRDHKPDCLVADIFFPW---ATDAAAKFGIPRLVFHG 148 (383)
Q Consensus 113 ~~l~~~~~D~vi~d~~~~~---~~~ia~~l~iP~v~~~~ 148 (383)
+.|.+.+||+||....... ...+.+.+|+|++.+..
T Consensus 68 E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 68 EKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 4456789999998754332 12233458899888754
No 477
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=26.97 E-value=73 Score=25.52 Aligned_cols=37 Identities=16% Similarity=0.045 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
+..+|+++..++. .=-=-+.+|+.|+++|++|+++..
T Consensus 24 ~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 24 KGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp TT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 4568888877642 111257889999999999999443
No 478
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=26.94 E-value=1.2e+02 Score=25.57 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=20.8
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 15 FMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 15 ~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+++.|.+ =..+++.|+++|++|++++..
T Consensus 11 tG~sg~i--G~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 11 TGASRGI--GRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred ECCCchH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4455654 478899999999999777653
No 479
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=26.93 E-value=1.2e+02 Score=25.85 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=24.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
|.++++. +.|.+- ..+++.|+++|++|+++...
T Consensus 16 k~vlItG-as~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 16 KVAIVTG-GNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CEEEEeC-CCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 5555554 445555 78999999999999888654
No 480
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=26.92 E-value=1.1e+02 Score=25.39 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=24.2
Q ss_pred CCCCEEE-ecCCCc-hHHHHHHHhCCCcEEEecc
Q 036871 118 HKPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 118 ~~~D~vi-~d~~~~-~~~~ia~~l~iP~v~~~~~ 149 (383)
..||+|| .|+... -+..=|.++|||.|.+.-+
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DT 140 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDT 140 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeC
Confidence 4688876 676544 5777788999999998755
No 481
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=26.87 E-value=70 Score=28.34 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=23.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
||+++-.++-| ..+|..|+++||+|+++..
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 67777666554 4568889999999999986
No 482
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=26.79 E-value=1.7e+02 Score=28.03 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=42.2
Q ss_pred hhHhhccCCCCCC-cEEEEEeCCccc---CCHhhHHHHHHHHHhCCCcEEEEEecCC
Q 036871 274 QECLRWLNSKQPN-SVVYICFGSIAN---FTSAQLMEIATGLEASRRNFIWVVRRNK 326 (383)
Q Consensus 274 ~~~~~~l~~~~~~-~vV~vs~GS~~~---~~~~~~~~~~~a~~~~~~~viw~~~~~~ 326 (383)
+++.+||.....+ ++++|+++|-.+ |+.++...+++.|++-.++|+++.+-+.
T Consensus 380 e~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgE 436 (542)
T COG1111 380 EEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGE 436 (542)
T ss_pred HHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEccccc
Confidence 5677777654332 258999999875 8999999999999998999999987665
No 483
>PRK09072 short chain dehydrogenase; Provisional
Probab=26.74 E-value=1.5e+02 Score=25.42 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=20.1
Q ss_pred CCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 16 MAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 16 ~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
++.|.+- ..+++.|+++|++|+++.-
T Consensus 12 G~s~~iG--~~ia~~l~~~G~~V~~~~r 37 (263)
T PRK09072 12 GASGGIG--QALAEALAAAGARLLLVGR 37 (263)
T ss_pred CCCchHH--HHHHHHHHHCCCEEEEEEC
Confidence 4445554 7889999999999988764
No 484
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=26.72 E-value=3.6e+02 Score=22.11 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=31.2
Q ss_pred cE-EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 036871 8 LH-VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPAN 46 (383)
Q Consensus 8 ~~-il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~ 46 (383)
.+ |+|+..+..-|-.-+..+++.|++.|..|.++.-...
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~ 147 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEI 147 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 35 7788888778877788999999999999988875443
No 485
>PRK08181 transposase; Validated
Probab=26.67 E-value=1.3e+02 Score=26.43 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
..+|+++-.++.|=..-..++|.++.++|+.|.+++...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~ 144 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTD 144 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHH
Confidence 346777766677777777888888888888887776543
No 486
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=26.64 E-value=1e+02 Score=25.72 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=24.2
Q ss_pred CCCCEEE-ecCCCc-hHHHHHHHhCCCcEEEecc
Q 036871 118 HKPDCLV-ADIFFP-WATDAAAKFGIPRLVFHGT 149 (383)
Q Consensus 118 ~~~D~vi-~d~~~~-~~~~ia~~l~iP~v~~~~~ 149 (383)
..||+|| .|.... -+..=|.++|||.|.++-+
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDT 146 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDT 146 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeC
Confidence 3788876 676544 4677788999999998755
No 487
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=26.62 E-value=1.7e+02 Score=27.43 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=35.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
..|+|+-.++.|-..-...||..|..+|+.|.+++.+.++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 4677777778899999999999999999999999988765
No 488
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=26.60 E-value=93 Score=24.10 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=26.3
Q ss_pred EEE-EEcCCCcccHHHHHHHHHHHHhC-CCeEEE
Q 036871 9 HVF-FFPFMAHGHMIPIVDMAKLFASR-GVKASV 40 (383)
Q Consensus 9 ~il-~~~~~~~gH~~p~~~la~~L~~r-GH~Vt~ 40 (383)
||+ .++.-...|..-+.+||..|.+. |.+|.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 344 45555889999999999999999 999874
No 489
>PRK12377 putative replication protein; Provisional
Probab=26.54 E-value=66 Score=27.76 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=32.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 8 LHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 8 ~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
..++|+=.++.|=..-..++|++|.+.|+.|.+++.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~ 141 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVM 141 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHH
Confidence 3577777778888888999999999999999888876543
No 490
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=26.49 E-value=1.7e+02 Score=27.82 Aligned_cols=40 Identities=15% Similarity=0.440 Sum_probs=34.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGP 48 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~ 48 (383)
.|+++-.++.|-..-...||..|.++|+.|.+++.+.+..
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 5666766788999999999999999999999999887754
No 491
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=26.47 E-value=1.4e+02 Score=23.00 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=26.4
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITT 43 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~ 43 (383)
.|+++-.-..|=..-...|.+.|.+||++|.++-.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 45566666778889999999999999999986654
No 492
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=26.46 E-value=1.3e+02 Score=28.46 Aligned_cols=40 Identities=13% Similarity=0.309 Sum_probs=34.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Q 036871 9 HVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGP 48 (383)
Q Consensus 9 ~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~ 48 (383)
-|+++-.++.|-..-...||..|.++|+.|.+++.+.++.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 4556666688999999999999999999999999988763
No 493
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=26.43 E-value=3.4e+02 Score=25.42 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCC
Q 036871 6 PQLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPA 45 (383)
Q Consensus 6 ~~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~ 45 (383)
+.+|++++.-+ .-...+++.|.+-|-+|+.+.+..
T Consensus 273 ~Gkrv~i~gd~-----~~~~~l~~~L~elGm~~v~~~t~~ 307 (407)
T TIGR01279 273 RGKKIFFFGDN-----LLELPLARFLKRCGMEVVECGTPY 307 (407)
T ss_pred CCCEEEEECCc-----hHHHHHHHHHHHCCCEEEEecCCC
Confidence 45577776433 335667777888898887766544
No 494
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=26.42 E-value=1.4e+02 Score=23.43 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=27.5
Q ss_pred EEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 036871 11 FFFPFMAHGHMIPIVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 11 l~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~ 44 (383)
.++-....|-..-+..|+++|.++|++|.++-..
T Consensus 3 ~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 3 QIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 4445557788888999999999999999988753
No 495
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.42 E-value=77 Score=23.55 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 036871 24 IVDMAKLFASRGVKASVITTP 44 (383)
Q Consensus 24 ~~~la~~L~~rGH~Vt~~~~~ 44 (383)
+..+|++|+++|.+|+..-..
T Consensus 25 ~~~VA~~L~e~g~dv~atDI~ 45 (129)
T COG1255 25 FLDVAKRLAERGFDVLATDIN 45 (129)
T ss_pred HHHHHHHHHHcCCcEEEEecc
Confidence 788999999999887765543
No 496
>PRK08703 short chain dehydrogenase; Provisional
Probab=26.41 E-value=1.7e+02 Score=24.61 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 036871 25 VDMAKLFASRGVKASVITT 43 (383)
Q Consensus 25 ~~la~~L~~rGH~Vt~~~~ 43 (383)
..+++.|+++|++|+++.-
T Consensus 20 ~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 20 EQVAKAYAAAGATVILVAR 38 (239)
T ss_pred HHHHHHHHHcCCEEEEEeC
Confidence 5678999999999887764
No 497
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=26.27 E-value=1.6e+02 Score=20.86 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCCEEEecCCCc--hHHHHHHHh-----CCCcEEEecc
Q 036871 108 QEPLEQLLRDHKPDCLVADIFFP--WATDAAAKF-----GIPRLVFHGT 149 (383)
Q Consensus 108 ~~~l~~~l~~~~~D~vi~d~~~~--~~~~ia~~l-----~iP~v~~~~~ 149 (383)
.....+.+++..||+++.|.... .+..+++.+ ++|.|.++..
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCC
Confidence 45666777888999999997554 355554432 5787777644
No 498
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=26.26 E-value=1.3e+02 Score=22.41 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=32.5
Q ss_pred EEEEEeCCccc-CCHhhHHH-HHHHHHhCCCcEEEEEecCCCCCCchhhhccCchhHHHhhCCCCeEecCcccH-HHhhc
Q 036871 288 VVYICFGSIAN-FTSAQLME-IATGLEASRRNFIWVVRRNKNDGGEEEKEAWLPEGFEKRMKGKGLIIRGWAPQ-VLILD 364 (383)
Q Consensus 288 vV~vs~GS~~~-~~~~~~~~-~~~a~~~~~~~viw~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~~~~~~Pq-~~lL~ 364 (383)
+.++++|+... ...+.+.. .++.+.+...++-+.+-+... +.+ ++. ..+||+..+|++. .++++
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~----~~l--------~~~-~~~~v~~~g~~~e~~~~l~ 69 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP----DEL--------KRL-RRPNVRFHGFVEELPEILA 69 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-----HH--------CCH-HHCTEEEE-S-HHHHHHHH
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH----HHH--------HHh-cCCCEEEcCCHHHHHHHHH
Confidence 34556666653 23333333 444454433345444433322 111 111 2457999999863 34778
Q ss_pred CCCceeecc
Q 036871 365 HEAVGGFVT 373 (383)
Q Consensus 365 ~~~~~~fIt 373 (383)
.+++.+..+
T Consensus 70 ~~dv~l~p~ 78 (135)
T PF13692_consen 70 AADVGLIPS 78 (135)
T ss_dssp C-SEEEE-B
T ss_pred hCCEEEEEe
Confidence 888866654
No 499
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=26.26 E-value=1e+02 Score=28.78 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCCccchh
Q 036871 7 QLHVFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANGPYVSK 52 (383)
Q Consensus 7 ~~~il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~~~~~~ 52 (383)
+.||++...++-.= .-...+++.|.++|++|.++.++.....+.+
T Consensus 4 ~k~ill~v~gsiaa-yk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p 48 (392)
T COG0452 4 GKRILLGVTGSIAA-YKSVELVRLLRRSGAEVRVVMTESARKFITP 48 (392)
T ss_pred CceEEEEecCchhh-hhHHHHHHHHhhCCCeeEEEcchhhhhhcCc
Confidence 34888888876443 3458999999999999999998876555544
No 500
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=26.26 E-value=1.2e+02 Score=27.38 Aligned_cols=38 Identities=8% Similarity=-0.016 Sum_probs=30.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 036871 10 VFFFPFMAHGHMIPIVDMAKLFASRGVKASVITTPANG 47 (383)
Q Consensus 10 il~~~~~~~gH~~p~~~la~~L~~rGH~Vt~~~~~~~~ 47 (383)
+.++-.++.|-..-.+.++.+.+++|..|.|+.++...
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~ 95 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHAL 95 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccH
Confidence 34555668899999999999999999999999887643
Done!