BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036872
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 282 KISLSDPEMMGCIMLEKNGKTLD----FFPGEVSTD 313
++ ++D MGC+ +KNGKT++ F G + +D
Sbjct: 516 QVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSD 551
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 282 KISLSDPEMMGCIMLEKNGKTLD----FFPGEVSTD 313
++ ++D MGC+ +KNGKT++ F G + +D
Sbjct: 516 QVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSD 551
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 282 KISLSDPEMMGCIMLEKNGKTLD----FFPGEVSTD 313
++ ++D MGC+ +KNGKT++ F G + +D
Sbjct: 516 QVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSD 551
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 282 KISLSDPEMMGCIMLEKNGKTLD----FFPGEVSTD 313
++ ++D MGC+ +KNGKT++ F G + +D
Sbjct: 516 QVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSD 551
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 282 KISLSDPEMMGCIMLEKNGKTLD----FFPGEVSTD 313
++ ++D MGC+ +KNGKT++ F G + +D
Sbjct: 516 QVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSD 551
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 282 KISLSDPEMMGCIMLEKNGKTLD----FFPGEVSTD 313
++ ++D MGC+ +KNGKT++ F G + +D
Sbjct: 516 QVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSD 551
>pdb|1ZWS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|D Chain D, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|E Chain E, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|F Chain F, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|G Chain G, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
pdb|1ZWS|H Chain H, Crystal Structure Of The Catalytic Domain Of Human Drp-1
Kinase
Length = 288
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 195 EKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRA----DFRAKQR 250
E+I+R+V + LHH L D E+R +D L +L DF A++
Sbjct: 60 EEIEREVSILRQVLHHNVITLHDVYENR---------TDVVLILELVSGGELFDFLAQKE 110
Query: 251 AMEDALMALEFLKNIHD----MMVRKMYKFPLRREKISLSD 287
++ + A F+K I D + +K+ F L+ E I L D
Sbjct: 111 SLSEE-EATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLD 150
>pdb|1Z9X|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
pdb|1Z9X|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 3 Monomers In The Asymmetric Unit
Length = 321
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 195 EKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRA----DFRAKQR 250
E+I+R+V + LHH L D E+R +D L +L DF A++
Sbjct: 60 EEIEREVSILRQVLHHNVITLHDVYENR---------TDVVLILELVSGGELFDFLAQKE 110
Query: 251 AMEDALMALEFLKNIHD----MMVRKMYKFPLRREKISLSD 287
++ + A F+K I D + +K+ F L+ E I L D
Sbjct: 111 SLSEE-EATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLD 150
>pdb|2A2A|A Chain A, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|B Chain B, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|C Chain C, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2A2A|D Chain D, High-resolution Crystallographic Analysis Of The
Autoinhibited Conformation Of A Human Death-associated
Protein Kinase
pdb|2CKE|A Chain A, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|B Chain B, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|C Chain C, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
pdb|2CKE|D Chain D, Human Death-Associated Drp-1 Kinase In Complex With
Inhibitor
Length = 321
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 195 EKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRA----DFRAKQR 250
E+I+R+V + LHH L D E+R +D L +L DF A++
Sbjct: 60 EEIEREVSILRQVLHHNVITLHDVYENR---------TDVVLILELVSGGELFDFLAQKE 110
Query: 251 AMEDALMALEFLKNIHD----MMVRKMYKFPLRREKISLSD 287
++ + A F+K I D + +K+ F L+ E I L D
Sbjct: 111 SLSEE-EATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLD 150
>pdb|1WMK|A Chain A, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|E Chain E, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|C Chain C, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|B Chain B, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|F Chain F, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|D Chain D, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|H Chain H, Human Death-Associated Kinase Drp-1, Mutant S308d D40
pdb|1WMK|G Chain G, Human Death-Associated Kinase Drp-1, Mutant S308d D40
Length = 321
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 195 EKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRA----DFRAKQR 250
E+I+R+V + LHH L D E+R +D L +L DF A++
Sbjct: 60 EEIEREVSILRQVLHHNVITLHDVYENR---------TDVVLILELVSGGELFDFLAQKE 110
Query: 251 AMEDALMALEFLKNIHD----MMVRKMYKFPLRREKISLSD 287
++ + A F+K I D + +K+ F L+ E I L D
Sbjct: 111 SLSEE-EATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLD 150
>pdb|2A27|A Chain A, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|B Chain B, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|C Chain C, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|D Chain D, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|E Chain E, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|F Chain F, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|G Chain G, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
pdb|2A27|H Chain H, Human Drp-1 Kinase, W305s S308a D40 Mutant, Crystal Form
With 8 Monomers In The Asymmetric Unit
Length = 321
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 195 EKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRA----DFRAKQR 250
E+I+R+V + LHH L D E+R +D L +L DF A++
Sbjct: 60 EEIEREVSILRQVLHHNVITLHDVYENR---------TDVVLILELVSGGELFDFLAQKE 110
Query: 251 AMEDALMALEFLKNIHD----MMVRKMYKFPLRREKISLSD 287
++ + A F+K I D + +K+ F L+ E I L D
Sbjct: 111 SLSEE-EATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLD 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,312,475
Number of Sequences: 62578
Number of extensions: 381125
Number of successful extensions: 849
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 12
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)