BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036872
(392 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4R3M4|LIS1_MAGO7 Nuclear distribution protein PAC1 OS=Magnaporthe oryzae (strain
70-15 / ATCC MYA-4617 / FGSC 8958) GN=PAC1 PE=3 SV=3
Length = 461
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 266 HDMMVRKMYKFPLRREKISLSDPEMMGCIMLEKNGKTLDFFPGEVSTDRITAIQEAYWSM 325
HD VR + P R +S+SD + + C LE++GK + G+V +T ++ A +
Sbjct: 358 HDNWVRALVFHPGGRYLLSVSDDKTLRCWDLEQDGKCVKTI-GDVHERFVTCLRWAPGVV 416
Query: 326 ASALSEADG 334
A +EADG
Sbjct: 417 MDAPAEADG 425
>sp|Q02EV2|UBIB_PSEAB Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiB PE=3 SV=1
Length = 533
Score = 35.4 bits (80), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 126 PGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQ-----DMAILG 180
P + I QVL ++ A+ N + +VLL ++++ ++ RQ D+
Sbjct: 375 PLKDISFGQVLLR----LFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATA 430
Query: 181 SEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAE 220
FL+ R R +++ R+ +Q+ E + H++ + +D E
Sbjct: 431 QPFLERWMRERVSPKQLLRNFQQQVEQVPHLSQMARDTLE 470
>sp|B7V3F8|UBIB_PSEA8 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiB PE=3 SV=1
Length = 533
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 126 PGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQ-----DMAILG 180
P + I QVL ++ A+ N + +VLL ++++ ++ RQ D+
Sbjct: 375 PLKDISFGQVLLR----LFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATA 430
Query: 181 SEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAE 220
FL+ R R +++ R+ +Q+ E + H++ + +D E
Sbjct: 431 QPFLERWMRERVSPKQLLRNFQQQVEQVPHLSQMARDTLE 470
>sp|A6VDI8|UBIB_PSEA7 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain PA7) GN=ubiB PE=3 SV=1
Length = 533
Score = 35.4 bits (80), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 126 PGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQ-----DMAILG 180
P + I QVL ++ A+ N + +VLL ++++ ++ RQ D+
Sbjct: 375 PLKDISFGQVLLR----LFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATA 430
Query: 181 SEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAE 220
FL+ R R +++ R+ +Q+ E + H++ + +D E
Sbjct: 431 QPFLERWMRERVSPKQLLRNFQQQVEQVPHLSQMARDTLE 470
>sp|Q9HUB8|UBIB_PSEAE Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiB PE=3 SV=1
Length = 533
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 126 PGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQ-----DMAILG 180
P + I QVL ++ A+ N + +VLL ++++ ++ RQ D+
Sbjct: 375 PLKDISFGQVLLR----LFQTARRFNMEIQPQLVLLQKTLLNIEGLGRQLYPELDLWATA 430
Query: 181 SEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAE 220
FL+ R R +++ R+ +Q+ E + H++ + +D E
Sbjct: 431 QPFLERWMRERVSPKQLLRNFQQQVEQVPHLSQMARDTLE 470
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 126 PGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQ-----DMAILG 180
P + I Q+L ++ A+ N + +VLL ++++ ++ RQ D+
Sbjct: 374 PLKDISFGQLLLR----LFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTA 429
Query: 181 SEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDG 234
FL+ R R + R+++Q+AE + H++ I +D E RL+ SD
Sbjct: 430 QPFLERWMRERVSPLHLLRNLQQQAEQVPHLSQIARDALE-RLQRPEPPRESDA 482
>sp|Q1I3S8|UBIB_PSEE4 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
entomophila (strain L48) GN=ubiB PE=3 SV=1
Length = 537
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 126 PGRTIHSSQVLAEACKFVYNDAKFVNERARNDIVLLSRSIMRLDARARQ-----DMAILG 180
P + I QVL ++ A+ N + +VLL ++++ ++ RQ D+
Sbjct: 375 PLKDISFGQVLMR----LFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTA 430
Query: 181 SEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADL 240
FL+ R R + + ++ +AE L H+A + +D L+ + H +D L
Sbjct: 431 KPFLERWMRERMSPKAVIGNLYNQAEQLPHLADMTRDL----LERLSQPHLNDAQLPERR 486
Query: 241 RRAD 244
R+ D
Sbjct: 487 RQGD 490
>sp|P53253|NNF2_YEAST Protein NNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NNF2 PE=1 SV=1
Length = 936
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 171 RARQDMAILGSEFLKLNARAREDTEKIDRDVKQKAECLHHIATIL-----KD---KAESR 222
+ Q++ LGS+ KLNAR EK+ ++V Q AE + +T KD + E R
Sbjct: 845 KVNQELVQLGSKLDKLNAR----NEKLQKEVDQNAEEIEKFSTQFLSKREKDRFRRKEYR 900
Query: 223 LKHAADKHWSDGALEADLRRAD 244
++ A + LE D+ R +
Sbjct: 901 IREANKFELTIKGLEQDINRLE 922
>sp|Q5GU80|UPPP_XANOR Undecaprenyl-diphosphatase OS=Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85) GN=uppP PE=3 SV=2
Length = 265
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 300 GKTLDFFPGEVSTDRITAI----QEAYWSMASALSEADGIDYTDPEELELLVTTLIGL 353
G+ DFF + I AI ++ W++A+ L E D DY + LVT ++GL
Sbjct: 36 GRRSDFFNIVIQAGAILAICLALRQRLWTLATGLGERDNRDYVLKVSVAFLVTAVVGL 93
>sp|B2SHN5|UPPP_XANOP Undecaprenyl-diphosphatase OS=Xanthomonas oryzae pv. oryzae (strain
PXO99A) GN=uppP PE=3 SV=1
Length = 265
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 300 GKTLDFFPGEVSTDRITAI----QEAYWSMASALSEADGIDYTDPEELELLVTTLIGL 353
G+ DFF + I AI ++ W++A+ L E D DY + LVT ++GL
Sbjct: 36 GRRSDFFNIVIQAGAILAICLALRQRLWTLATGLGERDNRDYVLKVSVAFLVTAVVGL 93
>sp|Q2NXJ3|UPPP_XANOM Undecaprenyl-diphosphatase OS=Xanthomonas oryzae pv. oryzae (strain
MAFF 311018) GN=uppP PE=3 SV=1
Length = 265
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 300 GKTLDFFPGEVSTDRITAI----QEAYWSMASALSEADGIDYTDPEELELLVTTLIGL 353
G+ DFF + I AI ++ W++A+ L E D DY + LVT ++GL
Sbjct: 36 GRRSDFFNIVIQAGAILAICLALRQRLWTLATGLGERDNRDYVLKVSVAFLVTAVVGL 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,148,926
Number of Sequences: 539616
Number of extensions: 5121798
Number of successful extensions: 15358
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 15342
Number of HSP's gapped (non-prelim): 55
length of query: 392
length of database: 191,569,459
effective HSP length: 119
effective length of query: 273
effective length of database: 127,355,155
effective search space: 34767957315
effective search space used: 34767957315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)