Query 036872
Match_columns 392
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 06:16:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03375 TPP_OGFOR Thiamine pyr 46.2 27 0.00058 30.8 3.7 44 322-372 140-189 (193)
2 PRK13858 type IV secretion sys 44.9 83 0.0018 28.7 6.6 62 182-262 63-124 (147)
3 PF07328 VirD1: T-DNA border e 43.8 53 0.0012 30.2 5.2 63 181-262 63-125 (147)
4 COG2959 HemX Uncharacterized e 39.0 77 0.0017 32.9 6.1 111 167-277 64-215 (391)
5 PF11173 DUF2960: Protein of u 36.1 19 0.00042 30.1 1.2 31 320-350 21-51 (79)
6 KOG1655 Protein involved in va 35.8 57 0.0012 31.6 4.4 161 149-376 23-195 (218)
7 cd02008 TPP_IOR_alpha Thiamine 28.7 41 0.00088 28.9 2.0 35 322-357 133-167 (178)
8 PRK11104 hemG protoporphyrinog 28.5 54 0.0012 28.7 2.8 53 301-353 116-173 (177)
9 PRK09098 type III secretion sy 26.1 2.5E+02 0.0055 26.4 6.8 40 188-234 46-85 (233)
10 COG0300 DltE Short-chain dehyd 25.1 76 0.0017 30.7 3.3 53 298-352 28-80 (265)
11 PF08847 DUF1817: Domain of un 25.0 42 0.0009 30.9 1.5 20 328-348 91-110 (150)
12 PRK14192 bifunctional 5,10-met 23.9 91 0.002 29.9 3.6 61 319-384 47-115 (283)
13 cd02003 TPP_IolD Thiamine pyro 23.5 93 0.002 27.5 3.4 29 322-351 143-171 (205)
14 cd07952 ED_3B_like Uncharacter 23.2 59 0.0013 30.0 2.2 48 161-208 147-200 (256)
15 cd03376 TPP_PFOR_porB_like Thi 22.2 73 0.0016 29.4 2.5 45 328-375 158-208 (235)
16 KOG2622 Putative myrosinase pr 22.2 35 0.00076 36.1 0.5 89 5-99 268-356 (510)
17 PF10612 Spore-coat_CotZ: Spor 21.9 99 0.0021 28.4 3.2 50 258-307 18-70 (156)
18 KOG2688 Transcription-associat 21.4 82 0.0018 32.5 2.9 45 311-363 332-376 (394)
19 PRK02292 V-type ATP synthase s 21.1 5.4E+02 0.012 22.4 7.6 23 237-259 67-89 (188)
20 PF12323 HTH_OrfB_IS605: Helix 20.0 53 0.0011 23.0 0.9 14 135-148 21-34 (46)
No 1
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=46.21 E-value=27 Score=30.84 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=32.2
Q ss_pred HHHHHHhhhhcCCCCC------CChhhHHHHHHHhhcccccCCCCceeEeeeccCCC
Q 036872 322 YWSMASALSEADGIDY------TDPEELELLVTTLIGLDAMDGKSSVSLLAECSSSP 372 (392)
Q Consensus 322 Y~~MASAlsEAdGidy------TDPeELEllVatLiDldamDGkssvsLlaEcsSSP 372 (392)
|-++|.++ |+.+ ++|+||+..+...+. .+|-.=+-+..+|..-|
T Consensus 140 ~~~iA~a~----G~~~~~~~~v~~~~el~~al~~al~---~~gp~vIev~~~C~~~~ 189 (193)
T cd03375 140 PLALALAA----GATFVARGFSGDIKQLKEIIKKAIQ---HKGFSFVEVLSPCPTFP 189 (193)
T ss_pred HHHHHHHC----CCCEEEEEecCCHHHHHHHHHHHHh---cCCCEEEEEECCCCCCC
Confidence 44455544 6654 889999888887774 57777778889998877
No 2
>PRK13858 type IV secretion system T-DNA border endonuclease VirD1; Provisional
Probab=44.90 E-value=83 Score=28.73 Aligned_cols=62 Identities=21% Similarity=0.304 Sum_probs=49.2
Q ss_pred ccccchhhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHhhHhhHHhhhccCCcchhhhhhhhhhHHHHHHhHHHHHHHHH
Q 036872 182 EFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRADFRAKQRAMEDALMALEF 261 (392)
Q Consensus 182 gFLKLDARARedteKiD~~vk~ka~rl~hiA~iLke~A~s~Lk~AAd~HWsDGALeADLR~AD~rarrRAMEDa~mAle~ 261 (392)
||+++|+--+|+.++|=++.-.-+--|+.||...-+ |.|..+ -.|++.|-|.-..|++|..
T Consensus 63 g~V~v~r~T~e~~~~lir~l~gianNLNQLAr~aN~-------------~~~~~~------~~l~~er~~~g~~~~~l~~ 123 (147)
T PRK13858 63 GFLEIDAETREKMEAILQSIGTLSSNIAALLSAYAE-------------NPRPDL------EALRAERIAFGKEFADLDG 123 (147)
T ss_pred CeEeecccCHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CCCCcH------HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888888888888876544 333323 3589999999999999864
Q ss_pred H
Q 036872 262 L 262 (392)
Q Consensus 262 V 262 (392)
+
T Consensus 124 ~ 124 (147)
T PRK13858 124 L 124 (147)
T ss_pred H
Confidence 3
No 3
>PF07328 VirD1: T-DNA border endonuclease VirD1; InterPro: IPR009933 This family consists of several T-DNA border endonuclease VirD1 proteins, which appear to be found exclusively in Agrobacterium species. Agrobacterium, a plant pathogen, is capable to stably transform the plant cell with a segment of its own DNA called T-DNA (transferred DNA). This process depends, among others, on the specialised bacterial virulence proteins VirD1 and VirD2 that excise the T-DNA from its adjacent sequences. VirD1 is thought to interact with VirD2 in this process [].; GO: 0004519 endonuclease activity
Probab=43.80 E-value=53 Score=30.16 Aligned_cols=63 Identities=30% Similarity=0.476 Sum_probs=44.7
Q ss_pred cccccchhhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHhhHhhHHhhhccCCcchhhhhhhhhhHHHHHHhHHHHHHHH
Q 036872 181 SEFLKLNARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDGALEADLRRADFRAKQRAMEDALMALE 260 (392)
Q Consensus 181 sgFLKLDARARedteKiD~~vk~ka~rl~hiA~iLke~A~s~Lk~AAd~HWsDGALeADLR~AD~rarrRAMEDa~mAle 260 (392)
.|||..||--|++.+.| |+-|+.+-.+++|. +|-+++.|-.| +| -|++.|.+.-..|++|+
T Consensus 63 ~GFLEiDa~tr~~l~~i----------l~sIg~la~Nin~i-~~Aa~~~~~pd--~e------~f~aER~~fGk~fA~ld 123 (147)
T PF07328_consen 63 GGFLEIDAETRQKLEDI----------LRSIGGLATNINQI-LKAANRTPRPD--YE------AFRAERKAFGKEFADLD 123 (147)
T ss_pred cchhhccHHHHHHHHHH----------HHHHHHHHHHHHHH-HHHHhcCCCcc--HH------HHHHHHHHHHHHHHHHH
Confidence 59999999988888665 44566666666553 45556655433 33 38899999999999997
Q ss_pred HH
Q 036872 261 FL 262 (392)
Q Consensus 261 ~V 262 (392)
.+
T Consensus 124 ~l 125 (147)
T PF07328_consen 124 AL 125 (147)
T ss_pred HH
Confidence 54
No 4
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=38.98 E-value=77 Score=32.93 Aligned_cols=111 Identities=23% Similarity=0.263 Sum_probs=73.5
Q ss_pred hhchhhhhhhhhhcccc-----ccchhhhhhhhhhhchHHHHHHHHHHHHHHHHHHH---------------HhhHhhHH
Q 036872 167 RLDARARQDMAILGSEF-----LKLNARAREDTEKIDRDVKQKAECLHHIATILKDK---------------AESRLKHA 226 (392)
Q Consensus 167 RLd~RArqdvA~LGsgF-----LKLDARARedteKiD~~vk~ka~rl~hiA~iLke~---------------A~s~Lk~A 226 (392)
++..++-|+.+..+.-= -.|+.+...+-++|++..++-..+=+||..-.+.- |.--||.|
T Consensus 64 ~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is~~~~~dWllaEad~Ll~lA 143 (391)
T COG2959 64 ELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATISGSDRKDWLLAEADFLLKLA 143 (391)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccCChhhHHHHHHHHHHHHH
Confidence 34455555554333211 12455566667777776666666666666554443 33448999
Q ss_pred hhhccCCcch--------hhhhhhhh-----hHHHHHHhHHHHHHHHHHHHHH--------HHHHHHHhhcc
Q 036872 227 ADKHWSDGAL--------EADLRRAD-----FRAKQRAMEDALMALEFLKNIH--------DMMVRKMYKFP 277 (392)
Q Consensus 227 Ad~HWsDGAL--------eADLR~AD-----~rarrRAMEDa~mAle~VknIH--------D~mv~kl~~~~ 277 (392)
..+-|.||-. -||=|+|+ |.+-||||-+-+.+|+.|-.|- +.+.+..-+.|
T Consensus 144 ~rkL~l~~DV~TAv~lLk~aD~~La~~NdP~l~~~R~Aia~Dia~Lka~p~VD~~Gi~lrL~qL~nqVd~L~ 215 (391)
T COG2959 144 GRKLVLDQDVTTAVALLKSADARLAAMNDPSLIAVRRAIANDIAALKAVPQVDRDGIALRLDQLSNQVDNLP 215 (391)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHHHHhhcc
Confidence 9999999976 47888887 5899999999999999887663 34445555666
No 5
>PF11173 DUF2960: Protein of unknown function (DUF2960); InterPro: IPR021343 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=36.13 E-value=19 Score=30.09 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhhcCCCCCCChhhHHHHHHHh
Q 036872 320 EAYWSMASALSEADGIDYTDPEELELLVTTL 350 (392)
Q Consensus 320 eAY~~MASAlsEAdGidyTDPeELEllVatL 350 (392)
+-|.+|=.|.++|+|||.|+---.|.=|+..
T Consensus 21 dk~h~i~EAvAaAEGIDlt~fl~ME~Qv~~~ 51 (79)
T PF11173_consen 21 DKHHDIYEAVAAAEGIDLTEFLKMEQQVEMT 51 (79)
T ss_pred HhhcCHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 4466777889999999999998888877654
No 6
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.84 E-value=57 Score=31.59 Aligned_cols=161 Identities=22% Similarity=0.276 Sum_probs=99.8
Q ss_pred hhhhhhhhhHHHHhhhhhhhchhhhhhhhhhccccccchhhhhhhhhhh-----chHHHHHHHHHHHHHHHHHHHHhhHh
Q 036872 149 FVNERARNDIVLLSRSIMRLDARARQDMAILGSEFLKLNARAREDTEKI-----DRDVKQKAECLHHIATILKDKAESRL 223 (392)
Q Consensus 149 fVnERArnD~lLLsR~I~RLd~RArqdvA~LGsgFLKLDARARedteKi-----D~~vk~ka~rl~hiA~iLke~A~s~L 223 (392)
-||.|+.| +...|.+||+.-|+ -++-..|+ -+.+|+||.|+-.=-..+ +...
T Consensus 23 ~v~~r~dS----ve~KIskLDaeL~k---------------~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~y----E~q~ 79 (218)
T KOG1655|consen 23 SVNKRSDS----VEKKISKLDAELCK---------------YKDQIKKTRPGPAQNALKQRALRVLKQKKMY----ENQK 79 (218)
T ss_pred HHHHhhhh----HHHHHHHHHHHHHH---------------HHHHHHhcCCCcchhHHHHHHHHHHHHHHHH----HHHH
Confidence 46777776 78889998876553 12233333 256899999874433333 3334
Q ss_pred hHHhhhccCCcchhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCccccceeeecCCccc
Q 036872 224 KHAADKHWSDGALEADLRRADFRAKQRAMEDALMALEFLKNIHDMMVRKMYKFPLRREKISLSDPEMMGCIMLEKNGKTL 303 (392)
Q Consensus 224 k~AAd~HWsDGALeADLR~AD~rarrRAMEDa~mAle~VknIHD~mv~kl~~~~~~~~~gs~s~~~~~~~i~lekng~t~ 303 (392)
-+...+.|| ||.+-+|.+-+||-.-- |..|+.- -+.+
T Consensus 80 d~L~~QsfN-------------------MeQa~~t~e~LKdtq~T-v~AmK~~-----------------------~k~m 116 (218)
T KOG1655|consen 80 DSLDQQSFN-------------------MEQANFTAESLKDTQAT-VAAMKDT-----------------------NKEM 116 (218)
T ss_pred HHHHHhccc-------------------HHHHHHHHHHHHHHHHH-HHHHHHH-----------------------HHHH
Confidence 445566776 66666666666653211 1112110 0000
Q ss_pred ccCCCCcchhHHHHHHHH---HHHHHHhhhhcCCCCCCChh----hHHHHHHHhhcccccCCCCceeEeeeccCCCchhh
Q 036872 304 DFFPGEVSTDRITAIQEA---YWSMASALSEADGIDYTDPE----ELELLVTTLIGLDAMDGKSSVSLLAECSSSPDVNT 376 (392)
Q Consensus 304 ~~~pgevs~dri~aiqeA---Y~~MASAlsEAdGidyTDPe----ELEllVatLiDldamDGkssvsLlaEcsSSPDV~T 376 (392)
.---+.|.-|.|.-+|+- |..+|+-+-|+-|..|++|| +|+-=+.+|.+.+-|.+-.+..| -+...-|++.+
T Consensus 117 K~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~E~d~~~~~~~~~-~psyl~p~~~~ 195 (218)
T KOG1655|consen 117 KKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQELDMLEEDENYL-MPSYLAPANEP 195 (218)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHhHhhccccccccc-chhhhCCCCCC
Confidence 001125888999999986 55668899999999999885 66666778888888877777666 56666666543
No 7
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=28.71 E-value=41 Score=28.93 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=22.4
Q ss_pred HHHHHHhhhhcCCCCCCChhhHHHHHHHhhcccccC
Q 036872 322 YWSMASALSEADGIDYTDPEELELLVTTLIGLDAMD 357 (392)
Q Consensus 322 Y~~MASAlsEAdGidyTDPeELEllVatLiDldamD 357 (392)
|.++|.++ ..++...++|+||+.+.++|-+.-+-+
T Consensus 133 ~~~~a~a~-G~~~~~v~~~~~l~~~~~al~~a~~~~ 167 (178)
T cd02008 133 IEALVRAI-GVKRVVVVDPYDLKAIREELKEALAVP 167 (178)
T ss_pred HHHHHHHC-CCCEEEecCccCHHHHHHHHHHHHhCC
Confidence 55555555 344445569999998887777654433
No 8
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=28.54 E-value=54 Score=28.74 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=42.3
Q ss_pred cccccCCCCcchhHHHHHHHHHHHHHHhhhhcCC-----CCCCChhhHHHHHHHhhcc
Q 036872 301 KTLDFFPGEVSTDRITAIQEAYWSMASALSEADG-----IDYTDPEELELLVTTLIGL 353 (392)
Q Consensus 301 ~t~~~~pgevs~dri~aiqeAY~~MASAlsEAdG-----idyTDPeELEllVatLiDl 353 (392)
.....|+|....++..-++..-.+|-......+- +||||.++++-.+..+..+
T Consensus 116 ~~~~~f~G~l~~~k~~f~~r~~~~~i~k~~~~~~~~~~~~~~~dw~~v~~fa~~~~~~ 173 (177)
T PRK11104 116 DLCAVFAGALRYPRYRWFDRFMIKLIMKMTGGETDTSKEVEYTDWEQVANFAREFAQL 173 (177)
T ss_pred ceeEEEeeeecCCcCCHHHHHHHHHHHHHcCCCCCCCCceeeCCHHHHHHHHHHHHhh
Confidence 5677899999999999999877766555444454 9999999999998877665
No 9
>PRK09098 type III secretion system protein HrpB; Validated
Probab=26.09 E-value=2.5e+02 Score=26.36 Aligned_cols=40 Identities=25% Similarity=0.428 Sum_probs=26.1
Q ss_pred hhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHhhHhhHHhhhccCCc
Q 036872 188 ARAREDTEKIDRDVKQKAECLHHIATILKDKAESRLKHAADKHWSDG 234 (392)
Q Consensus 188 ARARedteKiD~~vk~ka~rl~hiA~iLke~A~s~Lk~AAd~HWsDG 234 (392)
++||+..++|=..++++|+.+ .+.|+.+-..+..+-|.+|
T Consensus 46 a~Ar~~A~~Il~~A~~~A~~I-------~~~A~~e~e~~~~~Gy~eG 85 (233)
T PRK09098 46 AAARARAERIVAEARAQAEAI-------LEAARREADRSARRGYAAG 85 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777764 4455555555566666666
No 10
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=25.09 E-value=76 Score=30.68 Aligned_cols=53 Identities=25% Similarity=0.283 Sum_probs=40.3
Q ss_pred cCCcccccCCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCChhhHHHHHHHhhc
Q 036872 298 KNGKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIG 352 (392)
Q Consensus 298 kng~t~~~~pgevs~dri~aiqeAY~~MASAlsEAdGidyTDPeELEllVatLiD 352 (392)
++|..+-+.- =+.||+.++++.+...-+-=.+.--+|++||++++.|...|.+
T Consensus 28 ~~g~~liLva--R~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 28 RRGYNLILVA--RREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred HCCCEEEEEe--CcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 4455554443 3578999999888887766566777999999999999988765
No 11
>PF08847 DUF1817: Domain of unknown function (DUF1817); InterPro: IPR014946 Members of this entry are functionally uncharacterised.
Probab=25.05 E-value=42 Score=30.85 Aligned_cols=20 Identities=40% Similarity=0.865 Sum_probs=17.4
Q ss_pred hhhhcCCCCCCChhhHHHHHH
Q 036872 328 ALSEADGIDYTDPEELELLVT 348 (392)
Q Consensus 328 AlsEAdGidyTDPeELEllVa 348 (392)
-+|.-+||-| +||.||+.|.
T Consensus 91 qfs~~eGi~f-nPEALEifvm 110 (150)
T PF08847_consen 91 QFSRKEGIQF-NPEALEIFVM 110 (150)
T ss_pred ccccccCcee-CHHHHHHHHH
Confidence 3589999999 9999998775
No 12
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.91 E-value=91 Score=29.91 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhhcCCCCC--------CChhhHHHHHHHhhcccccCCCCceeEeeeccCCCchhhhhhhcCCC
Q 036872 319 QEAYWSMASALSEADGIDY--------TDPEELELLVTTLIGLDAMDGKSSVSLLAECSSSPDVNTRVFKSRIP 384 (392)
Q Consensus 319 qeAY~~MASAlsEAdGidy--------TDPeELEllVatLiDldamDGkssvsLlaEcsSSPDV~TR~ala~~~ 384 (392)
.+.|..|-....|.-||++ +.+++|+-++..|-..+.++|- +.+--=-+.+..++.+..|+
T Consensus 47 s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi-----~VqlPlp~~i~~~~~ld~I~ 115 (283)
T PRK14192 47 SATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGI-----LLQHPVPAQIDERACFDAIS 115 (283)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEE-----EEeCCCccccCHHHHHhccC
Confidence 3578889999999999985 5688899999988877777772 22222222455555555554
No 13
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=23.50 E-value=93 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=21.5
Q ss_pred HHHHHHhhhhcCCCCCCChhhHHHHHHHhh
Q 036872 322 YWSMASALSEADGIDYTDPEELELLVTTLI 351 (392)
Q Consensus 322 Y~~MASAlsEAdGidyTDPeELEllVatLi 351 (392)
|.++|.|+ .++++..++|+||+-.+...+
T Consensus 143 ~~~~A~a~-G~~~~~v~~~~el~~al~~a~ 171 (205)
T cd02003 143 FAANARSL-GARVEKVKTIEELKAALAKAK 171 (205)
T ss_pred HHHHHHhC-CCEEEEECCHHHHHHHHHHHH
Confidence 56666666 455666799999998888766
No 14
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=23.18 E-value=59 Score=30.00 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=29.0
Q ss_pred Hhhhhhhhchhhhhhhhhhccc----cccchhhh--hhhhhhhchHHHHHHHHH
Q 036872 161 LSRSIMRLDARARQDMAILGSE----FLKLNARA--REDTEKIDRDVKQKAECL 208 (392)
Q Consensus 161 LsR~I~RLd~RArqdvA~LGsg----FLKLDARA--RedteKiD~~vk~ka~rl 208 (392)
|.+-|.++-..--++|+||||| ++..++-. -+.+++.|..+.+.++..
T Consensus 147 lG~aL~~~~~~~~~~vliIaSGdlSH~l~~~~p~~~~~~a~~fD~~~~~~l~~~ 200 (256)
T cd07952 147 FGRALGKALEGYEKRVAVIISADHAHTHDPDGPYGYSPDAAEYDAAIVEAIENN 200 (256)
T ss_pred HHHHHHHHHHhcCCcEEEEEecCccccCCCCCCCCCCcchHHHHHHHHHHHHcC
Confidence 6667776633334679999999 44433322 234667777766665543
No 15
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=22.18 E-value=73 Score=29.37 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=31.5
Q ss_pred hhhhcCCCC------CCChhhHHHHHHHhhcccccCCCCceeEeeeccCCCchh
Q 036872 328 ALSEADGID------YTDPEELELLVTTLIGLDAMDGKSSVSLLAECSSSPDVN 375 (392)
Q Consensus 328 AlsEAdGid------yTDPeELEllVatLiDldamDGkssvsLlaEcsSSPDV~ 375 (392)
.++|+-|++ ..+|+||+..+...++ .+|-.=+-+.+.|-.....+
T Consensus 158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~---~~gP~lIev~~~C~~~~~~~ 208 (235)
T cd03376 158 LIMAAHNIPYVATASVAYPEDLYKKVKKALS---IEGPAYIHILSPCPTGWRFD 208 (235)
T ss_pred HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh---CCCCEEEEEECCCCCCCCCC
Confidence 344445766 4789999888888775 47777777888898554443
No 16
>KOG2622 consensus Putative myrosinase precursor [Defense mechanisms]
Probab=22.15 E-value=35 Score=36.14 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=70.8
Q ss_pred ccccCCCcccchhhhhhccCceeeeeccccccccccccccccchhhcccCccccccccccCCCCccccCcceeeeeccce
Q 036872 5 ASKVSNGPVVSKEIITARSHGIVYSFAKTTVQHKLCPAIQGIELQQLSDGHLSAPKMSFSNEGLSSLSGKPISFVSRRSS 84 (392)
Q Consensus 5 askvsssp~~~~r~~~~~s~g~i~~~~ks~~~~~l~~~~q~~e~~~~~~g~~~~~r~~~~n~~~~~~~gk~~~~~sr~ss 84 (392)
++|-+-||+.+.++..+..-| +|..+|.|+ + ..||-+++..-.||.....=+|-|---|+...-|..+.++.++
T Consensus 268 ~~kGr~s~~~s~~st~ap~lG---~~~t~~~~~--~-s~~g~~~~~~~~d~~~~~~~~f~~Td~~~~e~~~~il~~~~~~ 341 (510)
T KOG2622|consen 268 LRKGRGSPIISSRSTNAPHLG---SFLTLPSHN--G-SDQGTVIRPLQPDKWCKGKDGFLNTDIWGLEALPTILYQATQE 341 (510)
T ss_pred hhcCCCCCCcccCCCCCcccc---ccccccccc--C-CcccccccccCCCceeeeccceeeeeeeccccccchhhhhhhh
Confidence 356677899999998888777 344455444 3 3788889888888888888899999999998778889999999
Q ss_pred eeEeecCCccccccc
Q 036872 85 ILCFSNGTRNAEAKE 99 (392)
Q Consensus 85 ~~C~s~~t~~tE~ke 99 (392)
-.|.+...+.+-|-.
T Consensus 342 ~~~~~~~a~~s~tlv 356 (510)
T KOG2622|consen 342 AVYLLIYASKSLTLV 356 (510)
T ss_pred HHHHHhhcccCccee
Confidence 999988877765544
No 17
>PF10612 Spore-coat_CotZ: Spore coat protein Z; InterPro: IPR019593 This entry represents proteins spore coat proteins Z (aka CotZ) and Y (aka CotY). They belong to a cysteine-rich spore coat family and are necessary for the assembly of intact exosporium.
Probab=21.91 E-value=99 Score=28.45 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHH---HHhhccccccccCCCCCccccceeeecCCcccccCC
Q 036872 258 ALEFLKNIHDMMVR---KMYKFPLRREKISLSDPEMMGCIMLEKNGKTLDFFP 307 (392)
Q Consensus 258 Ale~VknIHD~mv~---kl~~~~~~~~~gs~s~~~~~~~i~lekng~t~~~~p 307 (392)
+|+|++.+.|.+.. +=+..|++..-.+.+..|+..||...|+|+.+..|.
T Consensus 18 vv~~I~dlQ~~a~~~C~t~C~~~~Lg~~~~~~~~nTrPFiLytk~G~pF~af~ 70 (156)
T PF10612_consen 18 VVRFILDLQDAAEDECPTSCFQPLLGPNNSASGANTRPFILYTKDGEPFKAFG 70 (156)
T ss_pred HHHHHHHHHHHHhccCCCCCccccccccccccCCCCcCEEEEcCCCCeeEEec
Confidence 56777777777755 223455655444457778999999999999888776
No 18
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=21.43 E-value=82 Score=32.50 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHHHHHhhhhcCCCCCCChhhHHHHHHHhhcccccCCCCcee
Q 036872 311 STDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGKSSVS 363 (392)
Q Consensus 311 s~dri~aiqeAY~~MASAlsEAdGidyTDPeELEllVatLiDldamDGkssvs 363 (392)
+-.=+.+|++||.-+ |...-|++|+|=++|+|||+--++|--|-+
T Consensus 332 ~~lpls~~~~al~~~--------~~~~~~~deveciLa~lI~~G~ikgYish~ 376 (394)
T KOG2688|consen 332 SQLPLSRFLTALQFS--------GVTDVDLDEVECILANLIDLGRIKGYISHQ 376 (394)
T ss_pred CCCCHHHHHHHHhhc--------CCCCCchhhHHHHHHhhhhhccccchhchh
Confidence 444466777777543 336678999999999999999999975543
No 19
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=21.12 E-value=5.4e+02 Score=22.43 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=19.0
Q ss_pred hhhhhhhhhHHHHHHhHHHHHHH
Q 036872 237 EADLRRADFRAKQRAMEDALMAL 259 (392)
Q Consensus 237 eADLR~AD~rarrRAMEDa~mAl 259 (392)
.-..|+..|++|+..++++|..+
T Consensus 67 ~~~~rr~~L~~r~~~l~~v~~~a 89 (188)
T PRK02292 67 KLEAKRERLNARKEVLEDVRNQV 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999998754
No 20
>PF12323 HTH_OrfB_IS605: Helix-turn-helix domain; InterPro: IPR021027 This entry represents an N-terminal helix-turn-helix domain found in a variety of putative transposases [, , ]. It is usually associated with PF01385 from PFAM and PF07282 from PFAM.
Probab=20.02 E-value=53 Score=23.04 Aligned_cols=14 Identities=50% Similarity=0.665 Sum_probs=11.0
Q ss_pred hHHHHhhhhhcchh
Q 036872 135 VLAEACKFVYNDAK 148 (392)
Q Consensus 135 glaeAckfv~nDAk 148 (392)
....+|+||||-+-
T Consensus 21 ~~~~~~R~vyN~~L 34 (46)
T PF12323_consen 21 RWFGACRFVYNWAL 34 (46)
T ss_pred HHHHHHHHHHHHHH
Confidence 35679999999763
Done!