Query 036872
Match_columns 392
No_of_seqs 17 out of 19
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 10:11:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5x_A PCI domain-containing p 61.6 5.6 0.00019 34.3 3.3 37 315-359 144-180 (203)
2 3mkb_A Hemoglobin subunit alph 28.3 42 0.0014 27.2 3.2 28 304-332 111-138 (140)
3 1c7c_A Protein (deoxyhemoglobi 27.2 1E+02 0.0036 27.0 5.8 44 306-350 113-156 (283)
4 2lnd_A De novo designed protei 25.2 48 0.0016 27.6 3.0 53 296-351 47-99 (112)
5 4fla_A Regulation of nuclear P 24.7 13 0.00045 31.9 -0.4 39 338-389 19-57 (152)
6 4b4y_A Neuroglobin; transport 24.3 59 0.002 26.0 3.3 26 306-331 128-154 (154)
7 3abd_X REV3, HREV3, DNA polyme 19.6 32 0.0011 25.8 0.8 16 339-354 37-52 (52)
8 3fpz_A Thiazole biosynthetic e 19.2 25 0.00087 30.3 0.2 26 162-187 54-79 (326)
9 3kkj_A Amine oxidase, flavin-c 18.8 20 0.0007 26.1 -0.4 9 175-183 4-12 (336)
10 2imf_A HCCA isomerase, 2-hydro 18.2 1.2E+02 0.0042 24.5 4.1 49 319-375 99-150 (203)
No 1
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=61.57 E-value=5.6 Score=34.32 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCChhhHHHHHHHhhcccccCCC
Q 036872 315 ITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLIGLDAMDGK 359 (392)
Q Consensus 315 i~aiqeAY~~MASAlsEAdGidyTDPeELEllVatLiDldamDGk 359 (392)
+..|+.|+.-+ |.+-.|+||+|.||+.||.-.-++|.
T Consensus 144 l~~i~~~l~~~--------~~~~~~~~evE~ila~lI~~G~Ikg~ 180 (203)
T 3t5x_A 144 LDAFLVALKFM--------QVEDVDIDEVQCILANLIYMGHVKGY 180 (203)
T ss_dssp HHHHHHHHHHT--------TCTTCCHHHHHHHHHHHHHHTSSCEE
T ss_pred HHHHHHHHHhc--------CCCCCCHHHHHHHHHHHHHcCceEEE
Confidence 45667776432 56667999999999999999888885
No 2
>3mkb_A Hemoglobin subunit alpha; oxygen affinity, shortfin MAK storage, oxygen transport; HET: HEM; 1.90A {Isurus oxyrinchus} SCOP: a.1.1.2 PDB: 1gcv_A* 1gcw_A*
Probab=28.29 E-value=42 Score=27.17 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=24.6
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHhhhhc
Q 036872 304 DFFPGEVSTDRITAIQEAYWSMASALSEA 332 (392)
Q Consensus 304 ~~~pgevs~dri~aiqeAY~~MASAlsEA 332 (392)
..+| +.+++=..|.+++|+-+|.+|++.
T Consensus 111 ~~lg-~ft~ev~~AW~k~~~~va~~l~~~ 138 (140)
T 3mkb_A 111 THLA-EFSPATHCAVDKLLSAISSELSSK 138 (140)
T ss_dssp HHCS-CCCHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHcC-cCCHHHHHHHHHHHHHHHHHHHhh
Confidence 3567 889999999999999999999874
No 3
>1c7c_A Protein (deoxyhemoglobin (alpha chain)); heme, oxygen delivery vehicle, blood substitute, oxygen storage/transport complex; HET: HEM; 1.80A {Homo sapiens} SCOP: a.1.1.2 a.1.1.2 PDB: 1aby_A* 1abw_A* 1o1p_A* 1c7d_A* 1o1j_A* 1o1l_A* 1o1n_A* 1o1m_A*
Probab=27.17 E-value=1e+02 Score=27.03 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=35.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCChhhHHHHHHHh
Q 036872 306 FPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTL 350 (392)
Q Consensus 306 ~pgevs~dri~aiqeAY~~MASAlsEAdGidyTDPeELEllVatL 350 (392)
++...+++=..|.+++|+-+|.+|..+-.|-+ +++|.+.|.++.
T Consensus 113 lg~~~t~e~~~AW~~~~~~ia~~l~~~y~m~l-t~~~~~~v~~sw 156 (283)
T 1c7c_A 113 LPAEFTPAVHASLDKFLASVSTVLTSKYRGVL-SPADKTNVKAAW 156 (283)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred hcccCCHHHHHHHHHHHHHHHHHHhhhhccCC-CHHHHHHHHHHH
Confidence 34567888899999999999999999988885 566777766654
No 4
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.20 E-value=48 Score=27.59 Aligned_cols=53 Identities=28% Similarity=0.374 Sum_probs=38.1
Q ss_pred eecCCcccccCCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCChhhHHHHHHHhh
Q 036872 296 LEKNGKTLDFFPGEVSTDRITAIQEAYWSMASALSEADGIDYTDPEELELLVTTLI 351 (392)
Q Consensus 296 lekng~t~~~~pgevs~dri~aiqeAY~~MASAlsEAdGidyTDPeELEllVatLi 351 (392)
...||+.+-.|-...|..-+..||.--.+-. ..-|.+.-||||||-.-|...+
T Consensus 47 mkdngkplvvfvngasqndvnefqneakkeg---vsydvlkstdpeeltqrvrefl 99 (112)
T 2lnd_A 47 MKDNGKPLVVFVNGASQNDVNEFQNEAKKEG---VSYDVLKSTDPEELTQRVREFL 99 (112)
T ss_dssp HTTCCSCEEEEECSCCHHHHHHHHHHHHHHT---CEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEEecCcccccHHHHHHHHHhcC---cchhhhccCCHHHHHHHHHHHH
Confidence 3568999999988889999999986543321 1124445699999987776655
No 5
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.71 E-value=13 Score=31.87 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHhhcccccCCCCceeEeeeccCCCchhhhhhhcCCCcccCC
Q 036872 338 TDPEELELLVTTLIGLDAMDGKSSVSLLAECSSSPDVNTRVFKSRIPMDVDH 389 (392)
Q Consensus 338 TDPeELEllVatLiDldamDGkssvsLlaEcsSSPDV~TR~ala~~~~~~~~ 389 (392)
.+|.+-|-||..|-|| |-|-|-|..+|+-+|.+|-+|..
T Consensus 19 ~~p~~~~elik~L~~l-------------e~sassDa~vrq~Ia~LP~eVsd 57 (152)
T 4fla_A 19 AGPLLTEELIKALQDL-------------ENAASGDATVRQKIASLPQEVQD 57 (152)
T ss_dssp ----CHHHHHHHHHHH-------------HHHHHHHHHHHHHHHTSCGGGTC
T ss_pred CCCCCHHHHHHHHHHh-------------hccccchHHHHHHHHcCCccccC
Confidence 3677778888888887 66778899999999999998864
No 6
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=24.31 E-value=59 Score=25.99 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.9
Q ss_pred CC-CCcchhHHHHHHHHHHHHHHhhhh
Q 036872 306 FP-GEVSTDRITAIQEAYWSMASALSE 331 (392)
Q Consensus 306 ~p-gevs~dri~aiqeAY~~MASAlsE 331 (392)
+| ...+++-..|.+++|+-+|.+|+|
T Consensus 128 lg~~~~t~e~~~AW~~~~~~va~~l~~ 154 (154)
T 4b4y_A 128 VSEAKWSEEKKEAWLKAYGIITVMVTE 154 (154)
T ss_dssp SCTTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44 678899999999999999999986
No 7
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_Z*
Probab=19.63 E-value=32 Score=25.81 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=8.6
Q ss_pred ChhhHHHHHHHhhccc
Q 036872 339 DPEELELLVTTLIGLD 354 (392)
Q Consensus 339 DPeELEllVatLiDld 354 (392)
.|-.-|.|++||+|+|
T Consensus 37 SPP~ReEI~atLlD~d 52 (52)
T 3abd_X 37 SPPSREEIMATLLDHD 52 (52)
T ss_dssp CCCCHHHHHHHC----
T ss_pred CCccHHHHHHHHhccC
Confidence 4555677888888876
No 8
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=19.16 E-value=25 Score=30.32 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=18.8
Q ss_pred hhhhhhhchhhhhhhhhhccccccch
Q 036872 162 SRSIMRLDARARQDMAILGSEFLKLN 187 (392)
Q Consensus 162 sR~I~RLd~RArqdvA~LGsgFLKLD 187 (392)
.|....|+.++-.||+|+|+|--=|=
T Consensus 54 ~~~~~~~~~~~~~DV~IIGaGPAGls 79 (326)
T 3fpz_A 54 SRYFKDLDKFAVSDVIIVGAGSSGLS 79 (326)
T ss_dssp HHHHHHHHHTTEESEEEECCSHHHHH
T ss_pred HHHHhhhhhccCCCEEEECCCHHHHH
Confidence 34445577888899999999974443
No 9
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=18.77 E-value=20 Score=26.14 Aligned_cols=9 Identities=33% Similarity=0.715 Sum_probs=5.7
Q ss_pred hhhhhcccc
Q 036872 175 DMAILGSEF 183 (392)
Q Consensus 175 dvA~LGsgF 183 (392)
||+|+|+|-
T Consensus 4 dV~IIGaGp 12 (336)
T 3kkj_A 4 PIAIIGTGI 12 (336)
T ss_dssp CEEEECCSH
T ss_pred CEEEECcCH
Confidence 566666664
No 10
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Probab=18.20 E-value=1.2e+02 Score=24.48 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhc---CCCCCCChhhHHHHHHHhhcccccCCCCceeEeeeccCCCchh
Q 036872 319 QEAYWSMASALSEA---DGIDYTDPEELELLVTTLIGLDAMDGKSSVSLLAECSSSPDVN 375 (392)
Q Consensus 319 qeAY~~MASAlsEA---dGidyTDPeELEllVatLiDldamDGkssvsLlaEcsSSPDV~ 375 (392)
|..||.|..+|-++ +|.+.+|++.|.-+.+.+ .||. .-+.+|..||.+.
T Consensus 99 ~g~~~~~~~~lf~a~~~~~~~i~~~~~L~~~a~~~-Gld~-------~~~~~~~~s~~~~ 150 (203)
T 2imf_A 99 EAQAAAYVNVVFNAVWGEGIAPDLESLPALVSEKL-GWDR-------SAFEHFLSSNAAT 150 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCTTCTTHHHHHHHHH-TCCH-------HHHHHHHHSHHHH
T ss_pred cChHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHc-CCCH-------HHHHHHhcCHHHH
Confidence 44577777777766 789999999988876653 3332 1244566666653
Done!