Query 036876
Match_columns 234
No_of_seqs 131 out of 2587
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:20:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.2E-27 4.7E-32 227.1 20.0 223 1-230 490-722 (1153)
2 KOG0617 Ras suppressor protein 99.7 1E-19 2.2E-24 135.0 -5.9 160 58-231 29-191 (264)
3 PLN00113 leucine-rich repeat r 99.7 1.4E-16 3E-21 151.5 10.4 158 54-223 85-246 (968)
4 PLN00113 leucine-rich repeat r 99.6 8.2E-16 1.8E-20 146.2 10.9 157 55-223 157-318 (968)
5 KOG0444 Cytoskeletal regulator 99.6 4.1E-18 8.9E-23 148.0 -7.4 182 39-229 151-378 (1255)
6 KOG0617 Ras suppressor protein 99.6 5.2E-17 1.1E-21 120.7 -5.1 146 51-212 45-195 (264)
7 PLN03210 Resistant to P. syrin 99.5 9E-14 2E-18 134.0 14.1 161 58-230 630-843 (1153)
8 KOG0444 Cytoskeletal regulator 99.5 5.4E-16 1.2E-20 135.0 -4.2 154 55-220 215-393 (1255)
9 KOG4658 Apoptotic ATPase [Sign 99.4 2.8E-13 6E-18 126.0 6.7 210 1-226 483-730 (889)
10 KOG0472 Leucine-rich repeat pr 99.4 1.5E-15 3.3E-20 125.9 -9.1 168 42-224 118-308 (565)
11 KOG4194 Membrane glycoprotein 99.3 1.4E-13 3E-18 119.1 0.0 156 53-222 284-448 (873)
12 KOG4194 Membrane glycoprotein 99.3 1.7E-12 3.8E-17 112.5 5.2 164 42-220 82-252 (873)
13 KOG0532 Leucine-rich repeat (L 99.2 1.5E-13 3.3E-18 118.4 -5.7 157 57-231 93-251 (722)
14 KOG0472 Leucine-rich repeat pr 99.2 5E-14 1.1E-18 117.0 -9.9 153 56-224 62-217 (565)
15 PRK15370 E3 ubiquitin-protein 99.2 2.1E-10 4.5E-15 105.4 11.8 148 62-230 220-384 (754)
16 KOG0618 Serine/threonine phosp 99.2 1.4E-12 3E-17 117.9 -3.5 80 132-221 379-460 (1081)
17 PRK15387 E3 ubiquitin-protein 99.1 5.5E-10 1.2E-14 102.5 9.9 75 137-225 383-457 (788)
18 KOG0618 Serine/threonine phosp 99.1 2.8E-12 6.1E-17 116.0 -5.3 66 163-232 383-449 (1081)
19 PRK15370 E3 ubiquitin-protein 99.0 3E-10 6.5E-15 104.4 6.7 144 63-230 242-405 (754)
20 PF14580 LRR_9: Leucine-rich r 99.0 9.2E-11 2E-15 89.3 2.7 127 58-195 15-148 (175)
21 PRK15387 E3 ubiquitin-protein 99.0 3.1E-09 6.7E-14 97.7 11.2 15 61-75 241-255 (788)
22 PF14580 LRR_9: Leucine-rich r 99.0 5.5E-10 1.2E-14 85.1 4.6 124 92-224 20-151 (175)
23 COG4886 Leucine-rich repeat (L 98.9 1.7E-09 3.6E-14 93.3 4.6 146 63-225 141-289 (394)
24 KOG1259 Nischarin, modulator o 98.9 2.1E-10 4.6E-15 92.7 -1.1 129 92-229 285-415 (490)
25 KOG0532 Leucine-rich repeat (L 98.9 2.2E-10 4.8E-15 99.3 -1.3 154 55-223 114-270 (722)
26 KOG4237 Extracellular matrix p 98.8 5.4E-10 1.2E-14 93.1 0.1 82 133-222 271-355 (498)
27 cd00116 LRR_RI Leucine-rich re 98.8 3.8E-10 8.3E-15 94.2 -1.5 85 57-147 76-176 (319)
28 cd00116 LRR_RI Leucine-rich re 98.8 8.2E-10 1.8E-14 92.2 0.3 162 56-224 45-232 (319)
29 KOG1259 Nischarin, modulator o 98.8 9E-10 1.9E-14 89.1 -0.0 122 62-197 284-409 (490)
30 COG4886 Leucine-rich repeat (L 98.7 9.1E-09 2E-13 88.7 3.6 154 60-229 114-271 (394)
31 KOG3207 Beta-tubulin folding c 98.7 2.7E-09 5.9E-14 89.9 -0.2 187 35-231 120-319 (505)
32 PLN03150 hypothetical protein; 98.7 6.1E-08 1.3E-12 88.3 7.6 106 115-226 420-528 (623)
33 PLN03150 hypothetical protein; 98.6 1.4E-07 2.9E-12 86.1 8.4 110 92-205 419-533 (623)
34 PF13855 LRR_8: Leucine rich r 98.6 1.1E-07 2.4E-12 59.7 4.3 55 114-173 2-59 (61)
35 KOG4658 Apoptotic ATPase [Sign 98.5 7E-08 1.5E-12 90.4 4.0 80 112-196 570-651 (889)
36 KOG1859 Leucine-rich repeat pr 98.4 3.8E-09 8.2E-14 94.2 -8.0 122 92-225 165-291 (1096)
37 KOG4237 Extracellular matrix p 98.3 4.8E-08 1.1E-12 81.7 -2.1 126 92-224 68-199 (498)
38 PF13855 LRR_8: Leucine rich r 98.3 6.5E-07 1.4E-11 56.1 3.5 54 137-196 2-58 (61)
39 PF12799 LRR_4: Leucine Rich r 98.3 8.6E-07 1.9E-11 51.6 3.0 41 113-155 1-41 (44)
40 PRK15386 type III secretion pr 98.2 5.3E-06 1.1E-10 71.0 8.2 62 59-131 49-113 (426)
41 KOG3207 Beta-tubulin folding c 98.2 9.5E-08 2.1E-12 80.8 -3.0 153 59-225 118-283 (505)
42 PRK15386 type III secretion pr 98.2 2.9E-06 6.3E-11 72.6 5.8 118 88-223 48-187 (426)
43 KOG4579 Leucine-rich repeat (L 98.1 6.1E-08 1.3E-12 70.0 -4.4 85 92-182 54-141 (177)
44 KOG0531 Protein phosphatase 1, 97.9 1.5E-06 3.2E-11 75.6 -0.7 102 58-172 91-195 (414)
45 KOG0531 Protein phosphatase 1, 97.9 1.5E-06 3.2E-11 75.6 -1.4 127 61-202 71-200 (414)
46 PF12799 LRR_4: Leucine Rich r 97.9 2.5E-05 5.5E-10 45.4 3.9 39 165-205 3-41 (44)
47 KOG1859 Leucine-rich repeat pr 97.8 1.7E-07 3.6E-12 84.0 -9.4 107 84-197 179-289 (1096)
48 KOG1909 Ran GTPase-activating 97.7 3.4E-06 7.3E-11 69.7 -1.9 18 57-74 87-104 (382)
49 KOG2120 SCF ubiquitin ligase, 97.7 1.3E-06 2.7E-11 71.0 -4.5 62 163-227 313-377 (419)
50 KOG1644 U2-associated snRNP A' 97.7 0.0001 2.2E-09 56.9 5.8 77 94-172 45-122 (233)
51 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 4.9E-10 72.1 1.2 125 92-223 123-260 (699)
52 KOG2982 Uncharacterized conser 97.4 0.00016 3.4E-09 59.1 3.4 156 56-221 91-287 (418)
53 KOG4579 Leucine-rich repeat (L 97.3 9.4E-06 2E-10 58.8 -3.8 90 57-155 48-140 (177)
54 KOG3665 ZYG-1-like serine/thre 97.2 6.8E-05 1.5E-09 69.0 -0.6 126 62-196 122-259 (699)
55 KOG1644 U2-associated snRNP A' 97.2 0.00074 1.6E-08 52.2 4.7 56 92-147 65-124 (233)
56 KOG2120 SCF ubiquitin ligase, 97.1 1.9E-06 4.1E-11 70.0 -9.9 153 63-226 186-351 (419)
57 KOG2739 Leucine-rich acidic nu 96.6 0.0015 3.3E-08 52.3 2.4 12 135-146 64-75 (260)
58 KOG2739 Leucine-rich acidic nu 96.5 0.0013 2.9E-08 52.6 1.9 56 92-147 66-127 (260)
59 KOG1909 Ran GTPase-activating 96.4 0.00033 7.2E-09 58.2 -2.3 164 57-225 115-310 (382)
60 KOG2123 Uncharacterized conser 96.3 6.8E-05 1.5E-09 60.6 -6.7 84 60-151 17-103 (388)
61 PF00560 LRR_1: Leucine Rich R 96.2 0.0034 7.3E-08 30.5 1.6 19 115-133 2-20 (22)
62 COG5238 RNA1 Ran GTPase-activa 95.9 0.0032 7E-08 51.0 1.1 135 56-197 86-252 (388)
63 KOG2982 Uncharacterized conser 95.9 0.0012 2.7E-08 54.0 -1.3 84 60-147 69-157 (418)
64 PF13504 LRR_7: Leucine rich r 94.6 0.024 5.3E-07 25.6 1.4 15 114-128 2-16 (17)
65 COG5238 RNA1 Ran GTPase-activa 94.5 0.025 5.3E-07 46.1 2.2 36 112-147 91-131 (388)
66 PF13306 LRR_5: Leucine rich r 94.4 0.32 7E-06 34.4 7.7 18 54-71 4-21 (129)
67 KOG2123 Uncharacterized conser 94.1 0.0013 2.8E-08 53.4 -5.8 57 59-123 38-98 (388)
68 KOG3864 Uncharacterized conser 93.6 0.015 3.3E-07 45.0 -0.6 80 114-196 102-185 (221)
69 KOG3864 Uncharacterized conser 93.5 0.013 2.8E-07 45.5 -1.2 90 137-230 102-193 (221)
70 PF13306 LRR_5: Leucine rich r 93.0 0.42 9.1E-06 33.8 6.3 32 112-144 34-66 (129)
71 smart00370 LRR Leucine-rich re 90.9 0.17 3.8E-06 25.2 1.5 19 113-131 2-20 (26)
72 smart00369 LRR_TYP Leucine-ric 90.9 0.17 3.8E-06 25.2 1.5 19 113-131 2-20 (26)
73 KOG1947 Leucine rich repeat pr 88.8 0.089 1.9E-06 46.2 -0.9 35 166-200 272-308 (482)
74 KOG4341 F-box protein containi 87.8 0.15 3.2E-06 43.9 -0.2 105 92-200 321-439 (483)
75 KOG0473 Leucine-rich repeat pr 86.9 0.014 3.1E-07 46.3 -6.2 56 92-147 66-122 (326)
76 KOG0473 Leucine-rich repeat pr 86.6 0.015 3.3E-07 46.2 -6.2 78 92-174 43-122 (326)
77 smart00367 LRR_CC Leucine-rich 85.0 1 2.2E-05 22.5 2.1 16 213-228 2-17 (26)
78 smart00364 LRR_BAC Leucine-ric 84.8 0.62 1.4E-05 23.5 1.2 17 114-130 3-19 (26)
79 KOG1947 Leucine rich repeat pr 77.5 0.59 1.3E-05 41.0 -0.6 113 112-228 242-366 (482)
80 KOG4341 F-box protein containi 76.7 1.5 3.3E-05 38.0 1.6 40 185-226 370-414 (483)
81 smart00365 LRR_SD22 Leucine-ri 75.8 2.2 4.9E-05 21.5 1.5 13 114-126 3-15 (26)
82 PF13516 LRR_6: Leucine Rich r 66.1 4.3 9.4E-05 19.5 1.3 13 114-126 3-15 (24)
83 PF07725 LRR_3: Leucine Rich R 63.5 5.8 0.00013 18.6 1.3 19 114-132 1-19 (20)
84 smart00368 LRR_RI Leucine rich 50.1 12 0.00027 18.8 1.4 13 114-126 3-15 (28)
85 KOG3763 mRNA export factor TAP 44.7 11 0.00025 33.9 1.2 79 113-193 218-307 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=2.2e-27 Score=227.12 Aligned_cols=223 Identities=35% Similarity=0.624 Sum_probs=201.9
Q ss_pred CchHHHHHHHHHHhh-------cccccchhhHHHHHhcCcCccceeeEEEecCCceeeecCchhhCCCCCcceEEecCCC
Q 036876 1 MHDLLQELGREIFDK-------NQLILETADIYEVLTYNTGTKKIEGICLDMSKVKEICLNPNTFTKMPKLRFLKFYSSS 73 (234)
Q Consensus 1 mhd~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 73 (234)
|||++++||++++++ ++++|.+++++.++.+..|++.+++|.+|......+.+...+|.+|++|+.|.++.+.
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 999999999999864 6899999999999999999999999999999998889999999999999999998775
Q ss_pred CCCCCcccccccCCCCcc--EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCCCCCcEEEcccCccccc
Q 036876 74 FNGENKCKVSYLQDLGFV--EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIA 151 (234)
Q Consensus 74 ~~~~~~~~~~~~~~l~~l--~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~ 151 (234)
+.........+|.++..+ +|+.|.|.+++++.+|..+.+.+|+.|++.++++..+|.+++.+++|+++++++|..++.
T Consensus 570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ 649 (1153)
T PLN03210 570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE 649 (1153)
T ss_pred ccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc
Confidence 443334445788888887 899999999999999999999999999999999999999999999999999999987888
Q ss_pred CCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCC-Chhh
Q 036876 152 KTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAV-RWKE 230 (234)
Q Consensus 152 ~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l-~~~~ 230 (234)
+|.++.+++| +.|++++|..+..+|..++++++|+.|++++|+.++.+|.. ..+++|+.|++++|..+ .+|+
T Consensus 650 -ip~ls~l~~L---e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 650 -IPDLSMATNL---ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred -CCccccCCcc---cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCcccccc
Confidence 9987777777 99999999999999999999999999999999999999995 48999999999999887 3554
No 2
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=1e-19 Score=134.97 Aligned_cols=160 Identities=20% Similarity=0.197 Sum_probs=137.4
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCC
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHY 135 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l 135 (234)
+-+|.+++.|.+++|.++ .+|+.+..+ +|+.|++++|.++.+|..++ +++|+.|++..|++..+|.+++.+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-------~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-------VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred ccchhhhhhhhcccCcee-------ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 446788889999999887 889999999 99999999999999998887 999999999999999999999999
Q ss_pred CCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCC
Q 036876 136 SKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDA 214 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~ 214 (234)
+.|+.||+++|..-...+|+ |-.+..| +-|++++ +.++-+|..++.+++|+.|.+.+ +.+-++|.+ +|.++.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tl---ralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpke--ig~lt~ 174 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTL---RALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE--IGDLTR 174 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHH---HHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHH--HHHHHH
Confidence 99999999999844433787 6667677 8889988 68888998999999999999998 677889999 999999
Q ss_pred CcEEecCCCcCCChhhh
Q 036876 215 LRIQHIGHLLAVRWKEM 231 (234)
Q Consensus 215 L~~l~l~~c~~l~~~~~ 231 (234)
|+.+.++|..--..|+.
T Consensus 175 lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 175 LRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHhcccceeeecChh
Confidence 99999988754444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.68 E-value=1.4e-16 Score=151.50 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=89.4
Q ss_pred CchhhCCCCCcceEEecCCCCCCCCcccccccCCCC-cc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccc-cccc
Q 036876 54 NPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLG-FV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIE-QLWD 130 (234)
Q Consensus 54 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~-~l~~ 130 (234)
.+..|..+++|+.|++++|.+.+ .+|..+. .+ +|++|++++|.+....+...+++|++|++++|.+. .+|.
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~------~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~ 158 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSG------PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPN 158 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCC------cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCCh
Confidence 35678889999999999987765 5555543 44 67777777666432222222556666666666555 4455
Q ss_pred cccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccC
Q 036876 131 GVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSG 209 (234)
Q Consensus 131 ~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 209 (234)
.++++++|++|++++|..... +|. ++.+++| +.|++++|.....+|..++.+++|++|++++|.....+|.. +
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L---~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l 232 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSL---EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE--I 232 (968)
T ss_pred HHhcCCCCCEEECccCccccc-CChhhhhCcCC---CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh--H
Confidence 556666666666666553333 454 4444444 55555554444445555555555555555554444444544 4
Q ss_pred CCCCCCcEEecCCC
Q 036876 210 IVNDALRIQHIGHL 223 (234)
Q Consensus 210 ~~l~~L~~l~l~~c 223 (234)
+.+++|++|++++|
T Consensus 233 ~~l~~L~~L~L~~n 246 (968)
T PLN00113 233 GGLTSLNHLDLVYN 246 (968)
T ss_pred hcCCCCCEEECcCc
Confidence 55555555555544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.64 E-value=8.2e-16 Score=146.22 Aligned_cols=157 Identities=23% Similarity=0.286 Sum_probs=75.2
Q ss_pred chhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCC-CCCCccC-CCCccEEEecCCccc-cccc
Q 036876 55 PNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLK-SLPSNLS-AEKLVLLEVPGSSIE-QLWD 130 (234)
Q Consensus 55 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~-~lp~~~~-l~~L~~L~l~~~~l~-~l~~ 130 (234)
+..+..+++|++|++++|.+.+ .+|..+..+ +|++|++++|.+. .+|..+. +.+|+.|++++|++. .+|.
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVG------KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred ChHHhcCCCCCEEECccCcccc------cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 3445556666666666665443 344445555 5555555555432 3444443 555555555555554 3444
Q ss_pred cccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccC
Q 036876 131 GVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSG 209 (234)
Q Consensus 131 ~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 209 (234)
.++++++|++|++++|..... +|. ++.+++| +.|++++|.....+|..+.++++|++|++++|...+.+|.. +
T Consensus 231 ~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L---~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--~ 304 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKNL---QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL--V 304 (968)
T ss_pred hHhcCCCCCEEECcCceeccc-cChhHhCCCCC---CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh--H
Confidence 555555555555555542223 443 4444444 55555443333334444444444444444444333334443 3
Q ss_pred CCCCCCcEEecCCC
Q 036876 210 IVNDALRIQHIGHL 223 (234)
Q Consensus 210 ~~l~~L~~l~l~~c 223 (234)
..+++|+.|++++|
T Consensus 305 ~~l~~L~~L~l~~n 318 (968)
T PLN00113 305 IQLQNLEILHLFSN 318 (968)
T ss_pred cCCCCCcEEECCCC
Confidence 44444444444433
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.61 E-value=4.1e-18 Score=148.01 Aligned_cols=182 Identities=18% Similarity=0.226 Sum_probs=117.5
Q ss_pred eeEEEecCCceeeecCchhhCCCCCcceEEecCCCCCCC-------------------CcccccccCCCCcc-EEEEEee
Q 036876 39 EGICLDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGE-------------------NKCKVSYLQDLGFV-EVKYLHW 98 (234)
Q Consensus 39 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------------~~~~~~~~~~l~~l-~L~~L~l 98 (234)
..+++|+++++...+ |+...++.+|++|.+++|.+..+ ......+|.++..+ +|+.+|+
T Consensus 151 DLLfLDLS~NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccchhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 344667766654444 33455666677777776643221 22233577778888 8999999
Q ss_pred CCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCC---
Q 036876 99 HGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGS--- 173 (234)
Q Consensus 99 ~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~--- 173 (234)
+.|.+..+|.... +.+|+.|++++|+++++....+.+.+|++|++++|+ ++. +|. +++++.| +.|.+.+|
T Consensus 230 S~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~-LP~avcKL~kL---~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 230 SENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTV-LPDAVCKLTKL---TKLYANNNKLT 304 (1255)
T ss_pred cccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hcc-chHHHhhhHHH---HHHHhccCccc
Confidence 9999888888776 889999999999888887777777888888888887 777 666 5555555 55544442
Q ss_pred ---------------------CCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCCChh
Q 036876 174 ---------------------KSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAVRWK 229 (234)
Q Consensus 174 ---------------------~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l~~~ 229 (234)
+.+.-+|.++..|..|+.|.+++ +.+-++|.. +.-++.|++|++...++|..|
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPea--IHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEA--IHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhh--hhhcCCcceeeccCCcCccCC
Confidence 34444455555555555555553 455555555 555566666666666665544
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=5.2e-17 Score=120.68 Aligned_cols=146 Identities=21% Similarity=0.263 Sum_probs=131.3
Q ss_pred eecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccc--
Q 036876 51 ICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIE-- 126 (234)
Q Consensus 51 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~-- 126 (234)
+.+-++.+..+.+|+.|++++|++. .+|.+++.+ +|+.|++.-|.+..+|..|. ++.|+.|++++|++.
T Consensus 45 l~~vppnia~l~nlevln~~nnqie-------~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQIE-------ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchhh-------hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence 4445677889999999999999887 899999999 99999999999999999998 999999999999887
Q ss_pred cccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCC
Q 036876 127 QLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPE 205 (234)
Q Consensus 127 ~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 205 (234)
.+|..+..+..|+.|+++.|. ... +|. ++++++| ++|.+.+ +.+-++|.+++.++.|++|.+.+ +.+..+|+
T Consensus 118 ~lpgnff~m~tlralyl~dnd-fe~-lp~dvg~lt~l---qil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 118 SLPGNFFYMTTLRALYLGDND-FEI-LPPDVGKLTNL---QILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred cCCcchhHHHHHHHHHhcCCC-ccc-CChhhhhhcce---eEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 588888889999999999997 777 887 9999999 9999999 57778999999999999999999 78999999
Q ss_pred cccCCCC
Q 036876 206 ILSGIVN 212 (234)
Q Consensus 206 ~~~~~~l 212 (234)
+ ++++
T Consensus 191 e--l~~l 195 (264)
T KOG0617|consen 191 E--LANL 195 (264)
T ss_pred h--hhhh
Confidence 8 5554
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=9e-14 Score=133.96 Aligned_cols=161 Identities=25% Similarity=0.369 Sum_probs=103.6
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCC-CCCCCCccC-CCCccEEEecCC-cccccccccc
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYP-LKSLPSNLS-AEKLVLLEVPGS-SIEQLWDGVK 133 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~-~~~lp~~~~-l~~L~~L~l~~~-~l~~l~~~~~ 133 (234)
+..+++|+.|+++++.... .+| .+..+ +|++|++++|. +..+|..+. +.+|+.|++++| .+..+|..+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~------~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLK------EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred cccCCCCCEEECCCCCCcC------cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 3455666666666543111 233 34444 66666666654 555666555 666666666664 455555544
Q ss_pred CCCCCcEEEcccCcccccCCCC-CC-------------------CCCC----------------------------CCCc
Q 036876 134 HYSKLNQIIHVACKKLIAKTPN-PT-------------------LMPH----------------------------LNKL 165 (234)
Q Consensus 134 ~l~~L~~L~l~~~~~l~~~lp~-~~-------------------~l~~----------------------------L~~l 165 (234)
++++|++|++++|..+.. +|. .. .+.+ .++|
T Consensus 702 ~l~sL~~L~Lsgc~~L~~-~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKS-FPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCCCCCEEeCCCCCCccc-cccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 455566666655543333 321 00 0111 1245
Q ss_pred cEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCCC-hhh
Q 036876 166 VILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAVR-WKE 230 (234)
Q Consensus 166 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l~-~~~ 230 (234)
+.|++++|+.+..+|..++++++|++|++++|+.++.+|.. ..+++|+.|++++|..++ +|+
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccc
Confidence 78888888888889988999999999999999999999995 479999999999998883 554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.50 E-value=5.4e-16 Score=135.04 Aligned_cols=154 Identities=23% Similarity=0.265 Sum_probs=93.0
Q ss_pred chhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccc
Q 036876 55 PNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGV 132 (234)
Q Consensus 55 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~ 132 (234)
|..+..+.||+.++++.|.+. .+|+-+..+ +|+.|++++|.+..+.-... -.+++.|++++|+++.+|..+
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp-------~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~av 287 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLP-------IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAV 287 (1255)
T ss_pred CCchhhhhhhhhccccccCCC-------cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHH
Confidence 344556667777777777655 455555555 66666666666555443332 345555566666555555555
Q ss_pred cCCCCCcEEEcccCcccc-cCCCC-CCCCCCC--------------------CCccEEEecCCCCCCcccccccCCCCCC
Q 036876 133 KHYSKLNQIIHVACKKLI-AKTPN-PTLMPHL--------------------NKLVILILRGSKSLKSLPAEIFNLECLT 190 (234)
Q Consensus 133 ~~l~~L~~L~l~~~~~l~-~~lp~-~~~l~~L--------------------~~l~~L~l~~~~~l~~lp~~~~~l~~L~ 190 (234)
+++++|+.|.+.+|+ ++ ..+|. +|++.+| .+|+.|.++. +.+-.+|.++.-++.|+
T Consensus 288 cKL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLK 365 (1255)
T ss_pred hhhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcc
Confidence 555555555555544 22 12443 4443333 3448999875 78889999999999999
Q ss_pred EEeccCCCCCCcCCCcccCC-CCCCCcEEec
Q 036876 191 ELDLSDCSKLKRLPEILSGI-VNDALRIQHI 220 (234)
Q Consensus 191 ~L~l~~c~~l~~lp~~~~~~-~l~~L~~l~l 220 (234)
.|++..++.+- +|+. -. .-++|+-.++
T Consensus 366 vLDlreNpnLV-MPPK--P~da~~~lefYNI 393 (1255)
T KOG0444|consen 366 VLDLRENPNLV-MPPK--PNDARKKLEFYNI 393 (1255)
T ss_pred eeeccCCcCcc-CCCC--cchhhhcceeeec
Confidence 99999987764 3442 22 2245555444
No 9
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.41 E-value=2.8e-13 Score=125.98 Aligned_cols=210 Identities=22% Similarity=0.204 Sum_probs=128.7
Q ss_pred CchHHHHHHHHHHhh-----cccccchh-hHHHHHhcCcCccceeeEEEecCCceeeecCchhhCCCCCcceEEecCCCC
Q 036876 1 MHDLLQELGREIFDK-----NQLILETA-DIYEVLTYNTGTKKIEGICLDMSKVKEICLNPNTFTKMPKLRFLKFYSSSF 74 (234)
Q Consensus 1 mhd~~~~~~~~~~~~-----~~~l~~~~-~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 74 (234)
|||++||||.+++++ .+.+.... ...+ .++......++...+.......+.. -..+++|++|-+.+|..
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~----~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAG----SSENPKLRTLLLQRNSD 557 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccc-cccccchhheeEEEEeccchhhccC----CCCCCccceEEEeecch
Confidence 999999999999984 23333322 1111 1222233445555544443322221 12455788888887741
Q ss_pred CCCCcccccccC-CCCcc-EEEEEeeCCCC-CCCCCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccc
Q 036876 75 NGENKCKVSYLQ-DLGFV-EVKYLHWHGYP-LKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLI 150 (234)
Q Consensus 75 ~~~~~~~~~~~~-~l~~l-~L~~L~l~~~~-~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~ 150 (234)
....++. .+..+ .|++||+++|. +..+|..+. +-+||+|+++++.++++|.+++++.+|.+|++.++..+.
T Consensus 558 -----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 558 -----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred -----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc
Confidence 0002322 25666 88888888766 778888887 888888888888888888888888888888888887666
Q ss_pred cCCCC-CCCCCCCCCccEEEecCCC-CCCc-ccccccCCCCCCEEeccCCC-------------------------CCCc
Q 036876 151 AKTPN-PTLMPHLNKLVILILRGSK-SLKS-LPAEIFNLECLTELDLSDCS-------------------------KLKR 202 (234)
Q Consensus 151 ~~lp~-~~~l~~L~~l~~L~l~~~~-~l~~-lp~~~~~l~~L~~L~l~~c~-------------------------~l~~ 202 (234)
. +|. ...+.+| ++|.+.... .... .-..+.++++|+.+.+..+. ...+
T Consensus 633 ~-~~~i~~~L~~L---r~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~ 708 (889)
T KOG4658|consen 633 S-IPGILLELQSL---RVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRT 708 (889)
T ss_pred c-ccchhhhcccc---cEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccce
Confidence 6 666 5557777 888776632 1110 11223344444433332211 2223
Q ss_pred CCCcccCCCCCCCcEEecCCCcCC
Q 036876 203 LPEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 203 lp~~~~~~~l~~L~~l~l~~c~~l 226 (234)
.+.. ++.+.+|+.|.+.+|...
T Consensus 709 ~~~~--~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 709 LISS--LGSLGNLEELSILDCGIS 730 (889)
T ss_pred eecc--cccccCcceEEEEcCCCc
Confidence 3333 788889999999988775
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.38 E-value=1.5e-15 Score=125.95 Aligned_cols=168 Identities=25% Similarity=0.252 Sum_probs=107.6
Q ss_pred EEecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEE
Q 036876 42 CLDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLE 119 (234)
Q Consensus 42 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~ 119 (234)
.+++...+...+. +.++++..+..++..+|+++ ..|+++.++ ++..+++.++.++.+|+..- +..|++++
T Consensus 118 ~l~~s~n~~~el~-~~i~~~~~l~dl~~~~N~i~-------slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 118 KLDCSSNELKELP-DSIGRLLDLEDLDATNNQIS-------SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD 189 (565)
T ss_pred hhhccccceeecC-chHHHHhhhhhhhccccccc-------cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence 3455555444443 45666777777777777766 677777777 77777777777776665543 66677777
Q ss_pred ecCCccccccccccCCCCCcEEEcccCcccccCCCCCCCCCC---------------------CCCccEEEecCCCCCCc
Q 036876 120 VPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPNPTLMPH---------------------LNKLVILILRGSKSLKS 178 (234)
Q Consensus 120 l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~---------------------L~~l~~L~l~~~~~l~~ 178 (234)
..+|-++.+|+.++.+.+|..|++.+|+ +.. +|+|++... |+++.+||+.+ +.+++
T Consensus 190 ~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~-lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke 266 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGLESLELLYLRRNK-IRF-LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKE 266 (565)
T ss_pred cchhhhhcCChhhcchhhhHHHHhhhcc-ccc-CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-ccccc
Confidence 7777777777777777777777777776 666 666555333 34446666666 46666
Q ss_pred ccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 179 LPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 179 lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
+|.++.-+++|+++|+++ +.+..+|.. +|++ .|+.+.+.|.+
T Consensus 267 ~Pde~clLrsL~rLDlSN-N~is~Lp~s--Lgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSN-NDISSLPYS--LGNL-HLKFLALEGNP 308 (565)
T ss_pred CchHHHHhhhhhhhcccC-CccccCCcc--cccc-eeeehhhcCCc
Confidence 666666666666666665 556666665 5666 56666555543
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.34 E-value=1.4e-13 Score=119.13 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=102.4
Q ss_pred cCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCcccccc
Q 036876 53 LNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIEQLW 129 (234)
Q Consensus 53 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~~l~ 129 (234)
+..+.+-+++.|+.|++++|.++. ..+++..+. +|+.|+++.|.+..+++. +. +..|+.|++++|+++.+.
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~r------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQR------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred hhcccccccchhhhhccchhhhhe------eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH
Confidence 344455567777777777776653 234455555 777777777777777654 34 677777778777777665
Q ss_pred cc-ccCCCCCcEEEcccCcccccCCCC----CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccCCCCCCcC
Q 036876 130 DG-VKHYSKLNQIIHVACKKLIAKTPN----PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKLKRL 203 (234)
Q Consensus 130 ~~-~~~l~~L~~L~l~~~~~l~~~lp~----~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~l 203 (234)
++ +..+++|+.|||++|..... +.+ |.+++.| +.|++.| +.++.+| .++.++..|++|++.+ +-+.++
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~-IEDaa~~f~gl~~L---rkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSI 431 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWC-IEDAAVAFNGLPSL---RKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASI 431 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEE-Eecchhhhccchhh---hheeecC-ceeeecchhhhccCcccceecCCC-Ccceee
Confidence 54 55677888888887763333 443 4444444 8888887 6777777 4677888888888887 445554
Q ss_pred CCcccCCCCCCCcEEecCC
Q 036876 204 PEILSGIVNDALRIQHIGH 222 (234)
Q Consensus 204 p~~~~~~~l~~L~~l~l~~ 222 (234)
-+.+ +..+ .|+.|.+..
T Consensus 432 q~nA-Fe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 432 QPNA-FEPM-ELKELVMNS 448 (873)
T ss_pred cccc-cccc-hhhhhhhcc
Confidence 4432 5555 677776643
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.31 E-value=1.7e-12 Score=112.46 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=95.3
Q ss_pred EEecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCC-ccC-CCCccEE
Q 036876 42 CLDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPS-NLS-AEKLVLL 118 (234)
Q Consensus 42 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~-~~~-l~~L~~L 118 (234)
.+|+++++.-++.+..|.+++||+.+++.+|.+. .+|...... .++.|++.+|.+.++.. .++ ++.||.+
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-------RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-------hcccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 3677777666777788889999999999998776 566555444 56667766666655542 233 5666666
Q ss_pred EecCCcccccccc-ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEec
Q 036876 119 EVPGSSIEQLWDG-VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDL 194 (234)
Q Consensus 119 ~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l 194 (234)
++++|.++.+|.. +..-.++++|+|++|. ++. +.. |..+.+| ..|.++. +.++.+| ..|+++++|+.|++
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~-l~~~~F~~lnsL---~tlkLsr-NrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITT-LETGHFDSLNSL---LTLKLSR-NRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeecccc-ccc-cccccccccchh---eeeeccc-CcccccCHHHhhhcchhhhhhc
Confidence 6666666655443 2333456666666665 554 443 4444444 6666655 4555555 34555556666655
Q ss_pred cCCCCCCcCCCcccCCCCCCCcEEec
Q 036876 195 SDCSKLKRLPEILSGIVNDALRIQHI 220 (234)
Q Consensus 195 ~~c~~l~~lp~~~~~~~l~~L~~l~l 220 (234)
.. +.++.+-.-. +..+++|+.+.+
T Consensus 229 nr-N~irive~lt-FqgL~Sl~nlkl 252 (873)
T KOG4194|consen 229 NR-NRIRIVEGLT-FQGLPSLQNLKL 252 (873)
T ss_pred cc-cceeeehhhh-hcCchhhhhhhh
Confidence 54 3444331110 444445544444
No 13
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=1.5e-13 Score=118.42 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=128.3
Q ss_pred hhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCC
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHY 135 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l 135 (234)
.+..+..|..+.++.|.+- .+|..+..+ .|.+++++.|.+..+|..++..-|+.|-++.|+++.+|++++..
T Consensus 93 ~~~~f~~Le~liLy~n~~r-------~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~ 165 (722)
T KOG0532|consen 93 EACAFVSLESLILYHNCIR-------TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLL 165 (722)
T ss_pred HHHHHHHHHHHHHHhccce-------ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccc
Confidence 3444556777788877665 788888888 89999999999999998888888999999999999999999988
Q ss_pred CCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCC
Q 036876 136 SKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDA 214 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~ 214 (234)
.+|..++.++|. +.. +|. ++++..| +.|.+.. +.+..+|.++..++ |..||++ ||++..+|-. +.+++.
T Consensus 166 ~tl~~ld~s~ne-i~s-lpsql~~l~sl---r~l~vrR-n~l~~lp~El~~Lp-Li~lDfS-cNkis~iPv~--fr~m~~ 235 (722)
T KOG0532|consen 166 PTLAHLDVSKNE-IQS-LPSQLGYLTSL---RDLNVRR-NHLEDLPEELCSLP-LIRLDFS-CNKISYLPVD--FRKMRH 235 (722)
T ss_pred hhHHHhhhhhhh-hhh-chHHhhhHHHH---HHHHHhh-hhhhhCCHHHhCCc-eeeeecc-cCceeecchh--hhhhhh
Confidence 899999999887 777 877 7777777 8888887 67788888887666 8889998 5889999998 899999
Q ss_pred CcEEecCCCcCCChhhh
Q 036876 215 LRIQHIGHLLAVRWKEM 231 (234)
Q Consensus 215 L~~l~l~~c~~l~~~~~ 231 (234)
|++|.+. |..|+.|++
T Consensus 236 Lq~l~Le-nNPLqSPPA 251 (722)
T KOG0532|consen 236 LQVLQLE-NNPLQSPPA 251 (722)
T ss_pred heeeeec-cCCCCCChH
Confidence 9998885 445666654
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.20 E-value=5e-14 Score=117.04 Aligned_cols=153 Identities=20% Similarity=0.269 Sum_probs=108.2
Q ss_pred hhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCcccccccccc
Q 036876 56 NTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVK 133 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~ 133 (234)
+...++..|.++++++|... ..|+.+..+ +++.++.+++.+..+|+.+. +.+++.++.++|.+.++|++++
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~-------~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~ 134 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLS-------QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIG 134 (565)
T ss_pred HhhhcccceeEEEeccchhh-------hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHH
Confidence 45667888888888888766 788888888 88888888888888887765 7888888888888888888888
Q ss_pred CCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCC
Q 036876 134 HYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVN 212 (234)
Q Consensus 134 ~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l 212 (234)
.+..+..++..+|. +.. +|+ ++.+..+ ..+++.+ +.++.+|+..-+++.|++++... +.++++|++ +|.+
T Consensus 135 ~~~~l~dl~~~~N~-i~s-lp~~~~~~~~l---~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~--lg~l 205 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQ-ISS-LPEDMVNLSKL---SKLDLEG-NKLKALPENHIAMKRLKHLDCNS-NLLETLPPE--LGGL 205 (565)
T ss_pred HHhhhhhhhccccc-ccc-CchHHHHHHHH---HHhhccc-cchhhCCHHHHHHHHHHhcccch-hhhhcCChh--hcch
Confidence 88888888777776 666 666 5554444 6666666 45555554444466666666554 556666666 6666
Q ss_pred CCCcEEecCCCc
Q 036876 213 DALRIQHIGHLL 224 (234)
Q Consensus 213 ~~L~~l~l~~c~ 224 (234)
.+|..+++....
T Consensus 206 ~~L~~LyL~~Nk 217 (565)
T KOG0472|consen 206 ESLELLYLRRNK 217 (565)
T ss_pred hhhHHHHhhhcc
Confidence 666666554433
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.18 E-value=2.1e-10 Score=105.44 Aligned_cols=148 Identities=19% Similarity=0.173 Sum_probs=82.5
Q ss_pred CCcceEEecCCCCCCCCcccccccCCCCccEEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCCCCCcEE
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYLQDLGFVEVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHYSKLNQI 141 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L 141 (234)
++|+.|++++|.+. .+|..+.. .|+.|++++|.+..+|..+ ..+|+.|++++|+++.+|..+. .+|++|
T Consensus 220 ~nL~~L~Ls~N~Lt-------sLP~~l~~-~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L 288 (754)
T PRK15370 220 GNIKTLYANSNQLT-------SIPATLPD-TIQEMELSINRITELPERL-PSALQSLDLFHNKISCLPENLP--EELRYL 288 (754)
T ss_pred cCCCEEECCCCccc-------cCChhhhc-cccEEECcCCccCcCChhH-hCCCCEEECcCCccCccccccC--CCCcEE
Confidence 36777777777655 33332111 4566666666665555433 3456666666666666655442 356666
Q ss_pred EcccCcccccCCCC-CCC-----------CC-----CCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCC
Q 036876 142 IHVACKKLIAKTPN-PTL-----------MP-----HLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLP 204 (234)
Q Consensus 142 ~l~~~~~l~~~lp~-~~~-----------l~-----~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 204 (234)
++++|. ++. +|. +.. +. -.++|+.|++++| .+..+|..+ .++|+.|++++| .+..+|
T Consensus 289 ~Ls~N~-Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP 362 (754)
T PRK15370 289 SVYDNS-IRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKN-QITVLP 362 (754)
T ss_pred ECCCCc-ccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccccCChhh--cCcccEEECCCC-CCCcCC
Confidence 666664 554 443 110 00 0023366777663 455566544 257778888874 566777
Q ss_pred CcccCCCCCCCcEEecCCCcCCChhh
Q 036876 205 EILSGIVNDALRIQHIGHLLAVRWKE 230 (234)
Q Consensus 205 ~~~~~~~l~~L~~l~l~~c~~l~~~~ 230 (234)
.. + .++|+.|++++|.--.+|+
T Consensus 363 ~~--l--p~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 363 ET--L--PPTITTLDVSRNALTNLPE 384 (754)
T ss_pred hh--h--cCCcCEEECCCCcCCCCCH
Confidence 64 3 3578888888775445554
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.16 E-value=1.4e-12 Score=117.94 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=52.3
Q ss_pred ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccC
Q 036876 132 VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSG 209 (234)
Q Consensus 132 ~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 209 (234)
+.++++|+.|+++||. +.. +|. +.++..| +.|.++| +.++.+|..+..++.|++|...+ |.+..+|. +
T Consensus 379 l~~~~hLKVLhLsyNr-L~~-fpas~~~kle~L---eeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe---~ 448 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNR-LNS-FPASKLRKLEEL---EELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPE---L 448 (1081)
T ss_pred hccccceeeeeecccc-ccc-CCHHHHhchHHh---HHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeechh---h
Confidence 3467778888888887 777 776 4444445 7788887 57777776666666666665554 45566664 5
Q ss_pred CCCCCCcEEecC
Q 036876 210 IVNDALRIQHIG 221 (234)
Q Consensus 210 ~~l~~L~~l~l~ 221 (234)
.+++.|+.+|++
T Consensus 449 ~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 449 AQLPQLKVLDLS 460 (1081)
T ss_pred hhcCcceEEecc
Confidence 666666666664
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.08 E-value=5.5e-10 Score=102.54 Aligned_cols=75 Identities=27% Similarity=0.290 Sum_probs=51.1
Q ss_pred CCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCc
Q 036876 137 KLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALR 216 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~ 216 (234)
+|+.|++++|. ++. +|. ...+| +.|++++ +.+..+|.. +.+|+.|++++ +.++.+|.. ++.+++|+
T Consensus 383 ~L~~LdLs~N~-Lt~-LP~--l~s~L---~~LdLS~-N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~s--l~~L~~L~ 448 (788)
T PRK15387 383 GLKELIVSGNR-LTS-LPV--LPSEL---KELMVSG-NRLTSLPML---PSGLLSLSVYR-NQLTRLPES--LIHLSSET 448 (788)
T ss_pred ccceEEecCCc-ccC-CCC--cccCC---CEEEccC-CcCCCCCcc---hhhhhhhhhcc-CcccccChH--HhhccCCC
Confidence 45666666665 555 554 12344 7777777 456667643 24567788887 577888887 88999999
Q ss_pred EEecCCCcC
Q 036876 217 IQHIGHLLA 225 (234)
Q Consensus 217 ~l~l~~c~~ 225 (234)
.+++++++-
T Consensus 449 ~LdLs~N~L 457 (788)
T PRK15387 449 TVNLEGNPL 457 (788)
T ss_pred eEECCCCCC
Confidence 999988753
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.07 E-value=2.8e-12 Score=116.00 Aligned_cols=66 Identities=30% Similarity=0.358 Sum_probs=52.9
Q ss_pred CCccEEEecCCCCCCcccc-cccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCCChhhhh
Q 036876 163 NKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAVRWKEML 232 (234)
Q Consensus 163 ~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l~~~~~~ 232 (234)
.+|++|++++ +.+..+|. .+.++..|++|+++| |+++.+|.. +.+++.|++|..-+..-+.+||+.
T Consensus 383 ~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~t--va~~~~L~tL~ahsN~l~~fPe~~ 449 (1081)
T KOG0618|consen 383 KHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPDT--VANLGRLHTLRAHSNQLLSFPELA 449 (1081)
T ss_pred cceeeeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhhHH--HHhhhhhHHHhhcCCceeechhhh
Confidence 4459999988 68888885 477888889999998 788999987 888888888888766666788763
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.05 E-value=3e-10 Score=104.44 Aligned_cols=144 Identities=24% Similarity=0.269 Sum_probs=82.6
Q ss_pred CcceEEecCCCCCCCCcccccccCCCCccEEEEEeeCCCCCCCCCCccCCCCccEEEecCCcccccccccc---------
Q 036876 63 KLRFLKFYSSSFNGENKCKVSYLQDLGFVEVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVK--------- 133 (234)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~--------- 133 (234)
+|+.|++++|.+. .+|..+.. +|++|++++|.+..+|..+ +.+|+.|++++|+++.+|..+.
T Consensus 242 ~L~~L~Ls~N~L~-------~LP~~l~s-~L~~L~Ls~N~L~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-------ELPERLPS-ALQSLDLFHNKISCLPENL-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-------cCChhHhC-CCCEEECcCCccCcccccc-CCCCcEEECCCCccccCcccchhhHHHHHhc
Confidence 5666666666544 33332110 4555555555555554432 2345555555555544433211
Q ss_pred ----------CCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCc
Q 036876 134 ----------HYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKR 202 (234)
Q Consensus 134 ----------~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 202 (234)
..++|++|++++|. ++. +|. +. ++| +.|++++| .+..+|..+ .++|+.|++++| .+..
T Consensus 313 ~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~-LP~~l~--~sL---~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N-~Lt~ 381 (754)
T PRK15370 313 SNSLTALPETLPPGLKTLEAGENA-LTS-LPASLP--PEL---QVLDVSKN-QITVLPETL--PPTITTLDVSRN-ALTN 381 (754)
T ss_pred CCccccCCccccccceeccccCCc-ccc-CChhhc--Ccc---cEEECCCC-CCCcCChhh--cCCcCEEECCCC-cCCC
Confidence 12467777777776 666 765 32 345 88888884 566777644 357888888884 6777
Q ss_pred CCCcccCCCCCCCcEEecCCCcCCChhh
Q 036876 203 LPEILSGIVNDALRIQHIGHLLAVRWKE 230 (234)
Q Consensus 203 lp~~~~~~~l~~L~~l~l~~c~~l~~~~ 230 (234)
+|.. +. +.|+.|++++|.--.+|+
T Consensus 382 LP~~--l~--~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 382 LPEN--LP--AALQIMQASRNNLVRLPE 405 (754)
T ss_pred CCHh--HH--HHHHHHhhccCCcccCch
Confidence 8775 32 357777777765444444
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=9.2e-11 Score=89.33 Aligned_cols=127 Identities=20% Similarity=0.312 Sum_probs=45.3
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCC-cc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccc-cC
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLG-FV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGV-KH 134 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~-~~ 134 (234)
+.+..+++.|++++|.++ .+ +.+. .+ +++.|++++|.+..+.....+.+|+.|++++|+++.+.+++ ..
T Consensus 15 ~~n~~~~~~L~L~~n~I~-------~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-------TI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccccccccccc-------cc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHh
Confidence 345556788888888654 22 3454 34 78888888888877764334788888888888888776554 35
Q ss_pred CCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccc----cccCCCCCCEEecc
Q 036876 135 YSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPA----EIFNLECLTELDLS 195 (234)
Q Consensus 135 l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~----~~~~l~~L~~L~l~ 195 (234)
+++|++|++++|. +.. +..+..+..+++|+.|++.+| .+..-+. .+..+++|+.||-.
T Consensus 87 lp~L~~L~L~~N~-I~~-l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNK-ISD-LNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS----S-CCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCCc-CCC-hHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCE
Confidence 7888888888887 666 655444444555588888874 3333332 34556777777644
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.00 E-value=3.1e-09 Score=97.67 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=10.3
Q ss_pred CCCcceEEecCCCCC
Q 036876 61 MPKLRFLKFYSSSFN 75 (234)
Q Consensus 61 l~~L~~L~l~~~~~~ 75 (234)
+++|++|++++|.++
T Consensus 241 p~~Lk~LdLs~N~Lt 255 (788)
T PRK15387 241 PPELRTLEVSGNQLT 255 (788)
T ss_pred CCCCcEEEecCCccC
Confidence 356777777777665
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=5.5e-10 Score=85.09 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=46.9
Q ss_pred EEEEEeeCCCCCCCCCCcc-CCCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC-C-CCCCCCCCccEE
Q 036876 92 EVKYLHWHGYPLKSLPSNL-SAEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN-P-TLMPHLNKLVIL 168 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~-~~l~~L~~l~~L 168 (234)
+++.|+++++.+..+..-. .+.+|+.|+++.|.++.+ +++..+++|++|++++|. +++ ++. + ..+++| +.|
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~-I~~-i~~~l~~~lp~L---~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNR-ISS-ISEGLDKNLPNL---QEL 93 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S--CHHHHHH-TT-----EE
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCC-CCc-cccchHHhCCcC---CEE
Confidence 7888999998877765433 367889999999988887 467778889999999887 777 754 3 235555 999
Q ss_pred EecCCCCCCccc--ccccCCCCCCEEeccCCCCCCcCCC---cccCCCCCCCcEEecCCCc
Q 036876 169 ILRGSKSLKSLP--AEIFNLECLTELDLSDCSKLKRLPE---ILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 169 ~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~lp~---~~~~~~l~~L~~l~l~~c~ 224 (234)
++++ +.+..+. ..++.+++|+.|++.+|+. ..-+. . .+..+|+|+.||-....
T Consensus 94 ~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~-vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 94 YLSN-NKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLF-VIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp E-TT-S---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHH-HHHH-TT-SEETTEETT
T ss_pred ECcC-CcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHH-HHHHcChhheeCCEEcc
Confidence 9987 5665554 3466788899999988643 33232 0 14567888888765443
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=1.7e-09 Score=93.30 Aligned_cols=146 Identities=23% Similarity=0.234 Sum_probs=112.7
Q ss_pred CcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCcc-CCCCccEEEecCCccccccccccCCCCCcE
Q 036876 63 KLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNL-SAEKLVLLEVPGSSIEQLWDGVKHYSKLNQ 140 (234)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 140 (234)
+|+.|++++|.+. .+|..+..+ .|+.|++++|.+..+|... .+.+|+.|++++|++..+|..+....+|++
T Consensus 141 nL~~L~l~~N~i~-------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~ 213 (394)
T COG4886 141 NLKELDLSDNKIE-------SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEE 213 (394)
T ss_pred hcccccccccchh-------hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhh
Confidence 7888888888665 555667777 8888888888888888776 488888888888888888887766777888
Q ss_pred EEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEe
Q 036876 141 IIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQH 219 (234)
Q Consensus 141 L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~ 219 (234)
+.+++|. ... .+. +..+.++ ..+.+.+ +.+..++..++.+++++.+++++ +.+..++. ++.+.+++.++
T Consensus 214 l~~~~N~-~~~-~~~~~~~~~~l---~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~---~~~~~~l~~L~ 283 (394)
T COG4886 214 LDLSNNS-IIE-LLSSLSNLKNL---SGLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISS---LGSLTNLRELD 283 (394)
T ss_pred hhhcCCc-cee-cchhhhhcccc---cccccCC-ceeeeccchhccccccceecccc-cccccccc---ccccCccCEEe
Confidence 8888885 333 443 5555566 7777665 56666677788888999999997 68888888 78899999999
Q ss_pred cCCCcC
Q 036876 220 IGHLLA 225 (234)
Q Consensus 220 l~~c~~ 225 (234)
+++...
T Consensus 284 ~s~n~~ 289 (394)
T COG4886 284 LSGNSL 289 (394)
T ss_pred ccCccc
Confidence 988544
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=2.1e-10 Score=92.67 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=72.4
Q ss_pred EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEE
Q 036876 92 EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILI 169 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~ 169 (234)
.|..+|+++|.+..+.+... .+.++.|++++|++..+.. +..+++|+.||+++|. ++. +.+ -.++.|. +.|.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~-~~Gwh~KLGNI---KtL~ 358 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAE-CVGWHLKLGNI---KTLK 358 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHh-hhhhHhhhcCE---eeee
Confidence 45566666666666666665 5667777777766666533 5666666677776665 555 443 2233344 6666
Q ss_pred ecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCCChh
Q 036876 170 LRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAVRWK 229 (234)
Q Consensus 170 l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l~~~ 229 (234)
+++ +.+..+. .++.+=+|..||+++ |.+..+..--++|++|.|+.+.+.+.+--..+
T Consensus 359 La~-N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 359 LAQ-NKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhh-hhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 666 4555444 245555566666666 33333222001566666666666655443333
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=2.2e-10 Score=99.26 Aligned_cols=154 Identities=19% Similarity=0.259 Sum_probs=126.8
Q ss_pred chhhCCCCCcceEEecCCCCCCCCcccccccCCCCccEEEEEeeCCCCCCCCCCccC-CCCccEEEecCCcccccccccc
Q 036876 55 PNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFVEVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVK 133 (234)
Q Consensus 55 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~ 133 (234)
+..+.++..|++++++.|+++ .+|..+..+-|+.+-+++|+++.+|..+. +..|..|+.+.|.+..+|..++
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS-------~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~ 186 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLS-------HLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG 186 (722)
T ss_pred chhhhhhhHHHHhhhccchhh-------cCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhh
Confidence 456778889999999999887 88998888899999999999999999988 8999999999999999999999
Q ss_pred CCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcc-cCCC
Q 036876 134 HYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEIL-SGIV 211 (234)
Q Consensus 134 ~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~ 211 (234)
.+.+|+.+.+.+|. +.. +|. ++.++ | ..||++. +.+..+|..|..++.|++|-+.+ |-+.+=|..+ .-|+
T Consensus 187 ~l~slr~l~vrRn~-l~~-lp~El~~Lp-L---i~lDfSc-Nkis~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGk 258 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNH-LED-LPEELCSLP-L---IRLDFSC-NKISYLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGK 258 (722)
T ss_pred hHHHHHHHHHhhhh-hhh-CCHHHhCCc-e---eeeeccc-Cceeecchhhhhhhhheeeeecc-CCCCCChHHHHhccc
Confidence 99999999999998 777 887 66554 6 8999985 89999999999999999999986 5677655431 0123
Q ss_pred CCCCcEEecCCC
Q 036876 212 NDALRIQHIGHL 223 (234)
Q Consensus 212 l~~L~~l~l~~c 223 (234)
.--.++|+...|
T Consensus 259 VHIFKyL~~qA~ 270 (722)
T KOG0532|consen 259 VHIFKYLSTQAC 270 (722)
T ss_pred eeeeeeecchhc
Confidence 333445555555
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.84 E-value=5.4e-10 Score=93.08 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=57.3
Q ss_pred cCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccCCCCCCcCCCcccC
Q 036876 133 KHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKLKRLPEILSG 209 (234)
Q Consensus 133 ~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 209 (234)
+++++|+.+++++|. ++. +.+ |.++..+ +.|.+.. +.+..+. ..|+++..|++|++.+ +.+..+.+.+ +
T Consensus 271 ~~L~~L~~lnlsnN~-i~~-i~~~aFe~~a~l---~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~a-F 342 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNK-ITR-IEDGAFEGAAEL---QELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGA-F 342 (498)
T ss_pred hhcccceEeccCCCc-cch-hhhhhhcchhhh---hhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEeccc-c
Confidence 356667777777666 666 654 6666666 7777766 4555555 3578888999999998 5666666543 7
Q ss_pred CCCCCCcEEecCC
Q 036876 210 IVNDALRIQHIGH 222 (234)
Q Consensus 210 ~~l~~L~~l~l~~ 222 (234)
..+.+|.++++-+
T Consensus 343 ~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 343 QTLFSLSTLNLLS 355 (498)
T ss_pred cccceeeeeehcc
Confidence 8888999988854
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.82 E-value=3.8e-10 Score=94.16 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=42.3
Q ss_pred hhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-E---EEEEeeCCCCCCC-----CCCccC-C-CCccEEEecCCcc
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-E---VKYLHWHGYPLKS-----LPSNLS-A-EKLVLLEVPGSSI 125 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~---L~~L~l~~~~~~~-----lp~~~~-l-~~L~~L~l~~~~l 125 (234)
.+..+++|+.|++++|.+.+ ..+..+..+ . |++|++++|.+.. +...+. + ++|+.|++++|.+
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 149 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGP------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149 (319)
T ss_pred HHHhcCceeEEEccCCCCCh------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence 45556667777776665442 122222222 3 6666666665431 111112 3 5666666666655
Q ss_pred c-----cccccccCCCCCcEEEcccCc
Q 036876 126 E-----QLWDGVKHYSKLNQIIHVACK 147 (234)
Q Consensus 126 ~-----~l~~~~~~l~~L~~L~l~~~~ 147 (234)
+ .++..+..+.+|++|++++|.
T Consensus 150 ~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 150 EGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred CchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 5 222234444556666666655
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.81 E-value=8.2e-10 Score=92.15 Aligned_cols=162 Identities=19% Similarity=0.112 Sum_probs=102.9
Q ss_pred hhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCC-CCCccC-CCC---ccEEEecCCcccc--
Q 036876 56 NTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKS-LPSNLS-AEK---LVLLEVPGSSIEQ-- 127 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~-lp~~~~-l~~---L~~L~l~~~~l~~-- 127 (234)
..+...++++.++++++.+.+.......++..+..+ +|++|+++++.+.. .+..+. +.. |++|++++|++..
T Consensus 45 ~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~ 124 (319)
T cd00116 45 SALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG 124 (319)
T ss_pred HHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH
Confidence 345577889999999886542111111233445556 99999999998763 333333 444 9999999998872
Q ss_pred ---ccccccCC-CCCcEEEcccCcccc-----cCCCC-CCCCCCCCCccEEEecCCCCCC----cccccccCCCCCCEEe
Q 036876 128 ---LWDGVKHY-SKLNQIIHVACKKLI-----AKTPN-PTLMPHLNKLVILILRGSKSLK----SLPAEIFNLECLTELD 193 (234)
Q Consensus 128 ---l~~~~~~l-~~L~~L~l~~~~~l~-----~~lp~-~~~l~~L~~l~~L~l~~~~~l~----~lp~~~~~l~~L~~L~ 193 (234)
+...+..+ ++|+.|++++|. ++ . ++. +..+.+| +.|++++|.... .++..+..+++|++|+
T Consensus 125 ~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~-~~~~~~~~~~L---~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 125 LRLLAKGLKDLPPALEKLVLGRNR-LEGASCEA-LAKALRANRDL---KELNLANNGIGDAGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred HHHHHHHHHhCCCCceEEEcCCCc-CCchHHHH-HHHHHHhCCCc---CEEECcCCCCchHHHHHHHHHHHhCCCCCEEe
Confidence 33345666 899999999998 44 2 222 3444455 888888854331 2333455567888888
Q ss_pred ccCCCCC----CcCCCcccCCCCCCCcEEecCCCc
Q 036876 194 LSDCSKL----KRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 194 l~~c~~l----~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
+++|..- +.++.. +..+++|++|++++|.
T Consensus 200 L~~n~i~~~~~~~l~~~--~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 200 LNNNGLTDEGASALAET--LASLKSLEVLNLGDNN 232 (319)
T ss_pred ccCCccChHHHHHHHHH--hcccCCCCEEecCCCc
Confidence 8876321 123333 4556778888887774
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=9e-10 Score=89.09 Aligned_cols=122 Identities=17% Similarity=0.228 Sum_probs=78.6
Q ss_pred CCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCCc
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLN 139 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~ 139 (234)
+.|+.+++++|.+. .+.++++-+ +++.|+++.|.+..+.. +. +.+|+.|++++|.++++-.--.++.+++
T Consensus 284 q~LtelDLS~N~I~-------~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-------QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred hhhhhccccccchh-------hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 45666777777655 555555555 77777777777666654 33 6777777777777776633334566777
Q ss_pred EEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCccc--ccccCCCCCCEEeccCC
Q 036876 140 QIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLP--AEIFNLECLTELDLSDC 197 (234)
Q Consensus 140 ~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c 197 (234)
+|.++.|. +.. +.+++++.+| ..||+++ +.+..+. ..++++++|+++.+.++
T Consensus 356 tL~La~N~-iE~-LSGL~KLYSL---vnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 356 TLKLAQNK-IET-LSGLRKLYSL---VNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred eeehhhhh-Hhh-hhhhHhhhhh---eeccccc-cchhhHHHhcccccccHHHHHhhcCC
Confidence 77777776 555 5555555556 7777777 4555544 35677777777777763
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.71 E-value=9.1e-09 Score=88.73 Aligned_cols=154 Identities=23% Similarity=0.257 Sum_probs=101.8
Q ss_pred CCCCcceEEecCCCCCCCCcccccccCCCCcc--EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCC
Q 036876 60 KMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV--EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYS 136 (234)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~ 136 (234)
..++++.|.+.++.+. .++...... +|+.++++++.+..+|..+. +++|+.|+++.|++..+|...+...
T Consensus 114 ~~~~l~~L~l~~n~i~-------~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~ 186 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-------DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLS 186 (394)
T ss_pred cccceeEEecCCcccc-------cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhh
Confidence 4456667777777655 555555554 57777777777777765554 7777777777777777776665677
Q ss_pred CCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCC
Q 036876 137 KLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDAL 215 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L 215 (234)
.|+.+++++|. +.. +|. .+...+| +.+.++++ .....+..+..+.++..+.+.+ +.+..+|.. ++.++++
T Consensus 187 ~L~~L~ls~N~-i~~-l~~~~~~~~~L---~~l~~~~N-~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~--~~~l~~l 257 (394)
T COG4886 187 NLNNLDLSGNK-ISD-LPPEIELLSAL---EELDLSNN-SIIELLSSLSNLKNLSGLELSN-NKLEDLPES--IGNLSNL 257 (394)
T ss_pred hhhheeccCCc-ccc-Cchhhhhhhhh---hhhhhcCC-cceecchhhhhcccccccccCC-ceeeeccch--hcccccc
Confidence 77777777776 666 766 3344445 77777763 3444455566777777777655 566665665 7788888
Q ss_pred cEEecCCCcCCChh
Q 036876 216 RIQHIGHLLAVRWK 229 (234)
Q Consensus 216 ~~l~l~~c~~l~~~ 229 (234)
+.++++++..-.++
T Consensus 258 ~~L~~s~n~i~~i~ 271 (394)
T COG4886 258 ETLDLSNNQISSIS 271 (394)
T ss_pred ceeccccccccccc
Confidence 88888877554433
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.7e-09 Score=89.92 Aligned_cols=187 Identities=17% Similarity=0.190 Sum_probs=116.5
Q ss_pred ccceeeEEEecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCcc---
Q 036876 35 TKKIEGICLDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNL--- 110 (234)
Q Consensus 35 ~~~i~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~--- 110 (234)
.+.++.+.+|-......... .....|++++.|+++.|-++.+. .+......+ +|+.|+++.|.+.......
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~----~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWF----PVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred HHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHH----HHHHHHHhcccchhcccccccccCCccccchh
Confidence 34556666655554333322 34557889999999988665321 112223444 7888888888765443322
Q ss_pred CCCCccEEEecCCcccc--ccccccCCCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCccc--ccccCC
Q 036876 111 SAEKLVLLEVPGSSIEQ--LWDGVKHYSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLP--AEIFNL 186 (234)
Q Consensus 111 ~l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp--~~~~~l 186 (234)
.+..|+.|.+++|.++. +-.-...+++|..|++.+|..+...-....-+..| +.|++++|+.+ ..+ ...+.+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L---~~LdLs~N~li-~~~~~~~~~~l 270 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL---QELDLSNNNLI-DFDQGYKVGTL 270 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH---hhccccCCccc-ccccccccccc
Confidence 36788888888888872 22235568888888888885232201113334455 88999985444 444 457788
Q ss_pred CCCCEEeccCCCCCCcC--CC-cc--cCCCCCCCcEEecCCCcCCChhhh
Q 036876 187 ECLTELDLSDCSKLKRL--PE-IL--SGIVNDALRIQHIGHLLAVRWKEM 231 (234)
Q Consensus 187 ~~L~~L~l~~c~~l~~l--p~-~~--~~~~l~~L~~l~l~~c~~l~~~~~ 231 (234)
+.|+.++++.| .+.++ |. +- .....++|++|+++..+.-.|+++
T Consensus 271 ~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 271 PGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred cchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcccccccc
Confidence 88888888875 33332 22 00 014568899999998888888876
No 32
>PLN03150 hypothetical protein; Provisional
Probab=98.66 E-value=6.1e-08 Score=88.28 Aligned_cols=106 Identities=15% Similarity=0.031 Sum_probs=75.5
Q ss_pred ccEEEecCCccc-cccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEE
Q 036876 115 LVLLEVPGSSIE-QLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTEL 192 (234)
Q Consensus 115 L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L 192 (234)
++.|++++|.+. .+|..++.+++|+.|++++|..... +|. ++.+.+| +.|++++|.....+|..++++++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L---~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSL---EVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCC---CEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 667778887776 5677778888888888888873335 776 7777666 888888865555677778888888888
Q ss_pred eccCCCCCCcCCCcccCCC-CCCCcEEecCCCcCC
Q 036876 193 DLSDCSKLKRLPEILSGIV-NDALRIQHIGHLLAV 226 (234)
Q Consensus 193 ~l~~c~~l~~lp~~~~~~~-l~~L~~l~l~~c~~l 226 (234)
++++|...+.+|.. ++. ..++..++++++..+
T Consensus 496 ~Ls~N~l~g~iP~~--l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 496 NLNGNSLSGRVPAA--LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred ECcCCcccccCChH--HhhccccCceEEecCCccc
Confidence 88887666677776 443 245566766665443
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.61 E-value=1.4e-07 Score=86.06 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=90.6
Q ss_pred EEEEEeeCCCCCC-CCCCccC-CCCccEEEecCCccc-cccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccE
Q 036876 92 EVKYLHWHGYPLK-SLPSNLS-AEKLVLLEVPGSSIE-QLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVI 167 (234)
Q Consensus 92 ~L~~L~l~~~~~~-~lp~~~~-l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~ 167 (234)
.+..|+++++.+. .+|..+. +.+|+.|++++|++. .+|..++.+++|+.|++++|..... +|. ++.+.+| +.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L---~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSL---RI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCC---CE
Confidence 4788999988864 6777776 999999999999998 7888899999999999999984446 888 8888888 99
Q ss_pred EEecCCCCCCcccccccCC-CCCCEEeccCCCCCCcCCC
Q 036876 168 LILRGSKSLKSLPAEIFNL-ECLTELDLSDCSKLKRLPE 205 (234)
Q Consensus 168 L~l~~~~~l~~lp~~~~~l-~~L~~L~l~~c~~l~~lp~ 205 (234)
|++++|.....+|..++.. .++..+++.+|..+...|.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 9999987777899877653 4677888988776666554
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=1.1e-07 Score=59.68 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=28.5
Q ss_pred CccEEEecCCcccccccc-ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCC
Q 036876 114 KLVLLEVPGSSIEQLWDG-VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGS 173 (234)
Q Consensus 114 ~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~ 173 (234)
+|++|++++|+++.+|.+ +.++++|++|++++|. ++. ++. |.++++| +.|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~-i~~~~f~~l~~L---~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTS-IPPDAFSNLPNL---RYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESE-EETTTTTTSTTE---SEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCc-cCHHHHcCCCCC---CEEeCcCC
Confidence 455555555555555432 4555555555555554 444 443 4444444 55555553
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.52 E-value=7e-08 Score=90.41 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=41.3
Q ss_pred CCCccEEEecCC-ccccccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCC
Q 036876 112 AEKLVLLEVPGS-SIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECL 189 (234)
Q Consensus 112 l~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L 189 (234)
++.|++|++++| .+.++|.+++.+.+|++|+++++. ++. +|. ++.+..| .+|++..+..+..+|.....+++|
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~-LP~~l~~Lk~L---~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISH-LPSGLGNLKKL---IYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccc-cchHHHHHHhh---heeccccccccccccchhhhcccc
Confidence 555555555553 344555555555555555555554 555 554 4444444 555555544444444434445555
Q ss_pred CEEeccC
Q 036876 190 TELDLSD 196 (234)
Q Consensus 190 ~~L~l~~ 196 (234)
++|.+..
T Consensus 645 r~L~l~~ 651 (889)
T KOG4658|consen 645 RVLRLPR 651 (889)
T ss_pred cEEEeec
Confidence 5555543
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=3.8e-09 Score=94.19 Aligned_cols=122 Identities=20% Similarity=0.182 Sum_probs=97.0
Q ss_pred EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCCCCCCC-CCCCccEEE
Q 036876 92 EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPNPTLMP-HLNKLVILI 169 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~-~L~~l~~L~ 169 (234)
+|.+.+++.|.+..+...+. ++.++.|++++|+++.+. .+..+.+|++||+++|. ++. +|.++.-. .| +.|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~-vp~l~~~gc~L---~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRH-VPQLSMVGCKL---QLLN 238 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hcc-ccccchhhhhh---eeee
Confidence 67778888888888888888 899999999999999885 78889999999999997 888 88754432 46 9999
Q ss_pred ecCCCCCCcccccccCCCCCCEEeccCCCCCCc---CCCcccCCCCCCCcEEecCCCcC
Q 036876 170 LRGSKSLKSLPAEIFNLECLTELDLSDCSKLKR---LPEILSGIVNDALRIQHIGHLLA 225 (234)
Q Consensus 170 l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~---lp~~~~~~~l~~L~~l~l~~c~~ 225 (234)
+++ |-+..+- .+.++.+|+.||+++ |.+.. +-+ ++.+.+|..|.+.|++-
T Consensus 239 lrn-N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~p---LwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRN-NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEP---LWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecc-cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhH---HHHHHHHHHHhhcCCcc
Confidence 998 5666654 377889999999998 45544 333 46677888888887653
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.32 E-value=4.8e-08 Score=81.65 Aligned_cols=126 Identities=17% Similarity=0.224 Sum_probs=96.1
Q ss_pred EEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCccccc-cccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCcc
Q 036876 92 EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIEQL-WDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLV 166 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~ 166 (234)
....++++.|.++.+|+. |+ +.+||.|+++.|+|+.+ |..++.+..|..|-+.+++.+++ +|. |+++..+ +
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~sl---q 143 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSSL---Q 143 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHH---H
Confidence 456677888899988865 55 89999999999999976 55688888886666666444888 887 8888777 8
Q ss_pred EEEecCCCCCCccc-ccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 167 ILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 167 ~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
.|.+.-| .+.-++ ..++.+++++.|.+.+ +.++.++... +..+..++.+.+...+
T Consensus 144 rLllNan-~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~t-f~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 144 RLLLNAN-HINCIRQDALRDLPSLSLLSLYD-NKIQSICKGT-FQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHhcChh-hhcchhHHHHHHhhhcchhcccc-hhhhhhcccc-ccchhccchHhhhcCc
Confidence 8888774 444444 5688888899999988 6788888832 7778888888776555
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=6.5e-07 Score=56.09 Aligned_cols=54 Identities=33% Similarity=0.401 Sum_probs=24.9
Q ss_pred CCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccC
Q 036876 137 KLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSD 196 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~ 196 (234)
+|++|++++|. ++. +|. |..+++| +.|++++ +.+..++ ..+.++++|+++++++
T Consensus 2 ~L~~L~l~~n~-l~~-i~~~~f~~l~~L---~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNNK-LTE-IPPDSFSNLPNL---ETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSST-ESE-ECTTTTTTGTTE---SEEEETS-SSESEEETTTTTTSTTESEEEETS
T ss_pred cCcEEECCCCC-CCc-cCHHHHcCCCCC---CEeEccC-CccCccCHHHHcCCCCCCEEeCcC
Confidence 34455555553 444 443 3333333 5555554 3334443 2344555555555554
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=8.6e-07 Score=51.63 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=29.6
Q ss_pred CCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC
Q 036876 113 EKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN 155 (234)
Q Consensus 113 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~ 155 (234)
++|++|++++|+++.+|..++++++|++|++++|. +++ ++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~-i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISD-ISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSB-EGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCC-CcC
Confidence 36778888888888887778888888888888886 666 553
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.23 E-value=5.3e-06 Score=71.05 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=37.3
Q ss_pred CCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCC-CCCCCCccCCCCccEEEecCC-cccccccc
Q 036876 59 TKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYP-LKSLPSNLSAEKLVLLEVPGS-SIEQLWDG 131 (234)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~-~~~lp~~~~l~~L~~L~l~~~-~l~~l~~~ 131 (234)
..+++++.|++++|.+. .+|. .. +|+.|.+++|. +..+|..+ +.+|++|++++| .+..+|.+
T Consensus 49 ~~~~~l~~L~Is~c~L~-------sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-------SLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHhcCCCEEEeCCCCCc-------ccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc
Confidence 34677777888777554 3441 11 56666776644 55555433 457777777776 66666654
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=9.5e-08 Score=80.77 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=106.6
Q ss_pred CCCCCcceEEecCCCCCCCCccccccc--CCCCcc-EEEEEeeCCCCCCCCC---CccC-CCCccEEEecCCcccccccc
Q 036876 59 TKMPKLRFLKFYSSSFNGENKCKVSYL--QDLGFV-EVKYLHWHGYPLKSLP---SNLS-AEKLVLLEVPGSSIEQLWDG 131 (234)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~l-~L~~L~l~~~~~~~lp---~~~~-l~~L~~L~l~~~~l~~l~~~ 131 (234)
+++++||.+.+.++... ..+ ...+.+ +++.||+++|-+...- .... +++|+.|+++.|++.....+
T Consensus 118 sn~kkL~~IsLdn~~V~-------~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-------DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred hhHHhhhheeecCcccc-------ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 36778898888877533 122 245566 9999999998654332 2223 89999999999999866555
Q ss_pred --ccCCCCCcEEEcccCccccc-CCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCC--C
Q 036876 132 --VKHYSKLNQIIHVACKKLIA-KTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLP--E 205 (234)
Q Consensus 132 --~~~l~~L~~L~l~~~~~l~~-~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp--~ 205 (234)
-..+++|+.|.++.|. ++. .+.. ...++++ +.|++.+|+.+..-.....-++.|+.|++++ +.+.+++ .
T Consensus 191 ~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl---~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~ 265 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSL---EVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFDQGY 265 (505)
T ss_pred cchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcH---HHhhhhcccccceecchhhhhhHHhhccccC-Cccccccccc
Confidence 3467899999999998 432 0211 3345556 9999999754433233345577899999998 5666666 3
Q ss_pred cccCCCCCCCcEEecCCCcC
Q 036876 206 ILSGIVNDALRIQHIGHLLA 225 (234)
Q Consensus 206 ~~~~~~l~~L~~l~l~~c~~ 225 (234)
. .+.++.|..++++.|..
T Consensus 266 ~--~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 266 K--VGTLPGLNQLNLSSTGI 283 (505)
T ss_pred c--cccccchhhhhccccCc
Confidence 3 78999999999987743
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.19 E-value=2.9e-06 Score=72.62 Aligned_cols=118 Identities=21% Similarity=0.365 Sum_probs=78.9
Q ss_pred CCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecC-CccccccccccCCCCCcEEEcccCcccccCCCCCCCCCCCCCc
Q 036876 88 LGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPG-SSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPNPTLMPHLNKL 165 (234)
Q Consensus 88 l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~-~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l 165 (234)
+..+ +++.|++++|.+..+|. -+.+|+.|.+++ +.++.+|..+ ..+|++|++++|..+.. +|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-LP~-----sL--- 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-LPE-----SV--- 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-ccc-----cc---
Confidence 3445 78899999999998882 266899999988 5777777655 35899999999966777 774 34
Q ss_pred cEEEecCC--CCCCcccccccCC------------------CCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCC
Q 036876 166 VILILRGS--KSLKSLPAEIFNL------------------ECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 166 ~~L~l~~~--~~l~~lp~~~~~l------------------~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c 223 (234)
+.|++.++ ..+..+|.++..| ++|++|++++|..+ .+|. +-..+|+.|.++.+
T Consensus 115 e~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~----~LP~SLk~L~ls~n 187 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPE----KLPESLQSITLHIE 187 (426)
T ss_pred ceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcc----cccccCcEEEeccc
Confidence 55555542 2355566544332 35677777776543 2444 23467777777654
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=6.1e-08 Score=69.97 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=71.5
Q ss_pred EEEEEeeCCCCCCCCCCccC--CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEE
Q 036876 92 EVKYLHWHGYPLKSLPSNLS--AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVIL 168 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~~~--l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L 168 (234)
.|..+++++|.++.+|+.+. .+.++.+++.+|.++.+|+++..++.|+.++++.|+ +.. .|. +..+.++ ..|
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~-~p~vi~~L~~l---~~L 128 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNA-EPRVIAPLIKL---DML 128 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-ccc-chHHHHHHHhH---HHh
Confidence 78888999999999998875 568999999999999999999999999999999998 777 787 6667777 888
Q ss_pred EecCCCCCCccccc
Q 036876 169 ILRGSKSLKSLPAE 182 (234)
Q Consensus 169 ~l~~~~~l~~lp~~ 182 (234)
+..+ +....+|..
T Consensus 129 ds~~-na~~eid~d 141 (177)
T KOG4579|consen 129 DSPE-NARAEIDVD 141 (177)
T ss_pred cCCC-CccccCcHH
Confidence 8877 566666643
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=1.5e-06 Score=75.62 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=61.5
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCCC
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHYS 136 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l~ 136 (234)
+..+++|..+++++|.+. .+...+..+ +|+++++++|.+..+...-.+..|+.|++++|.+..+ .++..+.
T Consensus 91 l~~~~~l~~l~l~~n~i~-------~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~-~~~~~l~ 162 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-------KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDI-SGLESLK 162 (414)
T ss_pred cccccceeeeeccccchh-------hcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhc-cCCccch
Confidence 445667777777777554 333335555 7777777777766665433466677777777777665 3344466
Q ss_pred CCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecC
Q 036876 137 KLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRG 172 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~ 172 (234)
.|+.+++++|. +.. ++. ...+.++ +.+.+.+
T Consensus 163 ~L~~l~l~~n~-i~~-ie~~~~~~~~~l---~~l~l~~ 195 (414)
T KOG0531|consen 163 SLKLLDLSYNR-IVD-IENDELSELISL---EELDLGG 195 (414)
T ss_pred hhhcccCCcch-hhh-hhhhhhhhccch---HHHhccC
Confidence 77777777776 555 544 2344444 6666655
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=1.5e-06 Score=75.61 Aligned_cols=127 Identities=17% Similarity=0.253 Sum_probs=89.9
Q ss_pred CCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCC
Q 036876 61 MPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKL 138 (234)
Q Consensus 61 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L 138 (234)
+..+..+.+..|.+. .....+..+ ++..+++.++.+..+...+. +.+|++|++++|+++.+ .++..+..|
T Consensus 71 l~~l~~l~l~~n~i~-------~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L 142 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-------KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLL 142 (414)
T ss_pred hHhHHhhccchhhhh-------hhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccch
Confidence 445555556666332 222335555 88999999999888876344 89999999999999887 566777789
Q ss_pred cEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCccccc-ccCCCCCCEEeccCCCCCCc
Q 036876 139 NQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAE-IFNLECLTELDLSDCSKLKR 202 (234)
Q Consensus 139 ~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~ 202 (234)
+.|++++|. ++. ++.+..+.+| +.+++++ +.+..+... ...+.+++.+++.+ +.+..
T Consensus 143 ~~L~l~~N~-i~~-~~~~~~l~~L---~~l~l~~-n~i~~ie~~~~~~~~~l~~l~l~~-n~i~~ 200 (414)
T KOG0531|consen 143 KELNLSGNL-ISD-ISGLESLKSL---KLLDLSY-NRIVDIENDELSELISLEELDLGG-NSIRE 200 (414)
T ss_pred hhheeccCc-chh-ccCCccchhh---hcccCCc-chhhhhhhhhhhhccchHHHhccC-Cchhc
Confidence 999999998 887 7766556666 9999988 455555542 36677788888877 34443
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=2.5e-05 Score=45.37 Aligned_cols=39 Identities=31% Similarity=0.433 Sum_probs=24.6
Q ss_pred ccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCC
Q 036876 165 LVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPE 205 (234)
Q Consensus 165 l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 205 (234)
|+.|++++ +.++.+|..++++++|++|++++| .+.++|.
T Consensus 3 L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 3 LEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp -SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred ceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 37777776 466667666777777777777763 5555554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.77 E-value=1.7e-07 Score=84.01 Aligned_cols=107 Identities=17% Similarity=0.087 Sum_probs=58.2
Q ss_pred ccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCCCCCCCC
Q 036876 84 YLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPNPTLMPH 161 (234)
Q Consensus 84 ~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~ 161 (234)
+..+++.+ .++.|+++.|.+..+. .+. +++|..|++++|.+..+|.--..--+|..|.+++|. ++. +-++.++.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~t-L~gie~Lks 255 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTT-LRGIENLKS 255 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH-HHh-hhhHHhhhh
Confidence 44445555 6666666666655554 333 666666677776666665432222236666666665 555 444444444
Q ss_pred CCCccEEEecCCCCCCccc--ccccCCCCCCEEeccCC
Q 036876 162 LNKLVILILRGSKSLKSLP--AEIFNLECLTELDLSDC 197 (234)
Q Consensus 162 L~~l~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c 197 (234)
| +.||+++ |.+.... ..++.+..|+.|++.|+
T Consensus 256 L---~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 256 L---YGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred h---hccchhH-hhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 4 6666666 3333322 12444555666666663
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.72 E-value=3.4e-06 Score=69.69 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=11.2
Q ss_pred hhCCCCCcceEEecCCCC
Q 036876 57 TFTKMPKLRFLKFYSSSF 74 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~ 74 (234)
++..+++|+.+++|.|.|
T Consensus 87 aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HHhcCCceeEeecccccc
Confidence 344566677777777754
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.3e-06 Score=71.02 Aligned_cols=62 Identities=26% Similarity=0.206 Sum_probs=45.9
Q ss_pred CCccEEEecCCCCCCc-ccccccCCCCCCEEeccCCCCCC--cCCCcccCCCCCCCcEEecCCCcCCC
Q 036876 163 NKLVILILRGSKSLKS-LPAEIFNLECLTELDLSDCSKLK--RLPEILSGIVNDALRIQHIGHLLAVR 227 (234)
Q Consensus 163 ~~l~~L~l~~~~~l~~-lp~~~~~l~~L~~L~l~~c~~l~--~lp~~~~~~~l~~L~~l~l~~c~~l~ 227 (234)
|++..||+++|..++. +-..+..++.|+++.++.|..+- .+- + +...|+|.+|++-||-.-+
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~-~--l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL-E--LNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHee-e--eccCcceEEEEeccccCch
Confidence 4559999999888875 22356788999999999996542 122 2 5778999999999986653
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=0.0001 Score=56.88 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=36.7
Q ss_pred EEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCC-CCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecC
Q 036876 94 KYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHY-SKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRG 172 (234)
Q Consensus 94 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l-~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~ 172 (234)
-.+|+++|.+..++..-.++.|..|.+..|+++.+.+.+..+ ++|..|.+++|+ +.. +.++..+..+|.|+.|.+-+
T Consensus 45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~-l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQE-LGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhh-hhhcchhccCCccceeeecC
Confidence 344555555444432223555555555555555554444332 345555555554 444 44333344444445555555
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=2.3e-05 Score=72.05 Aligned_cols=125 Identities=18% Similarity=0.273 Sum_probs=83.2
Q ss_pred EEEEEeeCCCC--CCCCCCcc-C-CCCccEEEecCCcccc--ccccccCCCCCcEEEcccCcccccCCCCCCCCCCCCCc
Q 036876 92 EVKYLHWHGYP--LKSLPSNL-S-AEKLVLLEVPGSSIEQ--LWDGVKHYSKLNQIIHVACKKLIAKTPNPTLMPHLNKL 165 (234)
Q Consensus 92 ~L~~L~l~~~~--~~~lp~~~-~-l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l 165 (234)
+|++|+++|.. ....|..+ . +|+|+.|.+.+-.+.. +..-..++++|..||+++++ ++. +-+++.+.||
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~n-l~GIS~LknL--- 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISN-LSGISRLKNL--- 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccC-cHHHhccccH---
Confidence 89999998854 22233333 3 8999999999865542 22235679999999999998 776 6556666666
Q ss_pred cEEEecCCCCCCccc--ccccCCCCCCEEeccCCCCCCcCCCcc-----cCCCCCCCcEEecCCC
Q 036876 166 VILILRGSKSLKSLP--AEIFNLECLTELDLSDCSKLKRLPEIL-----SGIVNDALRIQHIGHL 223 (234)
Q Consensus 166 ~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~lp~~~-----~~~~l~~L~~l~l~~c 223 (234)
+.|.+.+- .+.... ..+.++++|++||+|.-. ...-+..+ .-..+|.|+-||.|+.
T Consensus 198 q~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~-~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 198 QVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDK-NNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HHHhccCC-CCCchhhHHHHhcccCCCeeeccccc-cccchHHHHHHHHhcccCccccEEecCCc
Confidence 99988762 333222 246789999999999743 32222110 0234788999998864
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.00016 Score=59.09 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=87.9
Q ss_pred hhhCCCCCcceEEecCCCCCCCCcccccccCCC-Ccc-EEEEEeeCCCCCC--CCCCccC-CCCccEEEecCCccccccc
Q 036876 56 NTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDL-GFV-EVKYLHWHGYPLK--SLPSNLS-AEKLVLLEVPGSSIEQLWD 130 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~l-~L~~L~l~~~~~~--~lp~~~~-l~~L~~L~l~~~~l~~l~~ 130 (234)
..+.+||.|++|+++.|++. ...+.+ ..+ +|+++-+.|..+. ....... ++.++.|+++.|...++-.
T Consensus 91 ~ile~lP~l~~LNls~N~L~-------s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~ 163 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLS-------SDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNL 163 (418)
T ss_pred HHHhcCccceEeeccCCcCC-------CccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcc
Confidence 34568999999999999654 222222 233 7888888776533 3333334 6777888888775543211
Q ss_pred ---ccc---------------------------CCCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCccc
Q 036876 131 ---GVK---------------------------HYSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLP 180 (234)
Q Consensus 131 ---~~~---------------------------~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp 180 (234)
... .++++..+.+..|+ ++. ...-.+...+|++..|.++. +++....
T Consensus 164 Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~-~s~ek~se~~p~~~~LnL~~-~~idswa 240 (418)
T KOG2982|consen 164 DDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKT-ESSEKGSEPFPSLSCLNLGA-NNIDSWA 240 (418)
T ss_pred ccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccc-hhhcccCCCCCcchhhhhcc-cccccHH
Confidence 111 23444444444443 322 21111111223336677766 4555543
Q ss_pred --ccccCCCCCCEEeccCCCCCCcCCC----cccCCCCCCCcEEecC
Q 036876 181 --AEIFNLECLTELDLSDCSKLKRLPE----ILSGIVNDALRIQHIG 221 (234)
Q Consensus 181 --~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~l~~L~~l~l~ 221 (234)
.++.+++.|+.|.+++++....+.. .+++++++++++|+=+
T Consensus 241 svD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 241 SVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred HHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 3577888888888888766554433 2236777888777643
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.31 E-value=9.4e-06 Score=58.83 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=74.0
Q ss_pred hhCCCCCcceEEecCCCCCCCCcccccccCCCCcc--EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCcccccccccc
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV--EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVK 133 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~ 133 (234)
.+.+-..|...++++|.|. .+|+.+... .+..+++++|.+..+|.++. ++.|+.++++.|.+...|.-+.
T Consensus 48 ~l~~~~el~~i~ls~N~fk-------~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~ 120 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFK-------KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA 120 (177)
T ss_pred HHhCCceEEEEecccchhh-------hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHH
Confidence 3455567888899999777 677776555 78889999999999998887 8999999999999998888888
Q ss_pred CCCCCcEEEcccCcccccCCCC
Q 036876 134 HYSKLNQIIHVACKKLIAKTPN 155 (234)
Q Consensus 134 ~l~~L~~L~l~~~~~l~~~lp~ 155 (234)
.+.++-+|+...|. ... +|-
T Consensus 121 ~L~~l~~Lds~~na-~~e-id~ 140 (177)
T KOG4579|consen 121 PLIKLDMLDSPENA-RAE-IDV 140 (177)
T ss_pred HHHhHHHhcCCCCc-ccc-CcH
Confidence 78899999888776 555 664
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=6.8e-05 Score=68.98 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=64.1
Q ss_pred CCcceEEecCCCCCCCCcccccccCCCCcc--EEEEEeeCCCCCCC--CCCccC-CCCccEEEecCCccccccccccCCC
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYLQDLGFV--EVKYLHWHGYPLKS--LPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYS 136 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--~L~~L~l~~~~~~~--lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~ 136 (234)
++||.|++++...... ..|..++.+ .|+.|.+.+-.+.. +..... +++|+.||+++++++.+ .++.+++
T Consensus 122 ~nL~~LdI~G~~~~s~-----~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSN-----GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhc-----cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 3667777766532110 122223333 66666666644221 111112 56777777777777766 5667777
Q ss_pred CCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCccc-------ccccCCCCCCEEeccC
Q 036876 137 KLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLP-------AEIFNLECLTELDLSD 196 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp-------~~~~~l~~L~~L~l~~ 196 (234)
+|+.|.+.+-. +.. .+.+..+-+|++|+.||+|.-.... .+ +.-..++.|+.||.++
T Consensus 196 nLq~L~mrnLe-~e~-~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 196 NLQVLSMRNLE-FES-YQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred cHHHHhccCCC-CCc-hhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCC
Confidence 77777665444 333 3322222233333777777632222 22 1122366777777665
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.15 E-value=0.00074 Score=52.17 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=29.5
Q ss_pred EEEEEeeCCCCCCCCCCccC--CCCccEEEecCCccccccc--cccCCCCCcEEEcccCc
Q 036876 92 EVKYLHWHGYPLKSLPSNLS--AEKLVLLEVPGSSIEQLWD--GVKHYSKLNQIIHVACK 147 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~~~--l~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~~~ 147 (234)
.|.+|.+.+|.+..+.+.+. +++|..|.+.+|++.++.+ .+..+++|++|.+-+|.
T Consensus 65 rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 65 RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 45555555555544444432 4556666666665554422 34455566666666665
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=1.9e-06 Score=69.99 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=99.6
Q ss_pred CcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCC-CCCccC-CCCccEEEecCC-cccccccc--ccCCC
Q 036876 63 KLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKS-LPSNLS-AEKLVLLEVPGS-SIEQLWDG--VKHYS 136 (234)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~-lp~~~~-l~~L~~L~l~~~-~l~~l~~~--~~~l~ 136 (234)
.|+.|+++...++.. .+-.-++.+ +|+.|.+.|..+.. +-..+. -.+|+.++++.+ .+++.... +.+++
T Consensus 186 Rlq~lDLS~s~it~s-----tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS-----TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHH-----HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 478888887744310 112224444 78888888877543 222233 578999999984 66643222 56788
Q ss_pred CCcEEEcccCcccccCCCC--CCCC-CCCCCccEEEecCCCCCC---cccccccCCCCCCEEeccCCCCCCc-CCCcccC
Q 036876 137 KLNQIIHVACKKLIAKTPN--PTLM-PHLNKLVILILRGSKSLK---SLPAEIFNLECLTELDLSDCSKLKR-LPEILSG 209 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp~--~~~l-~~L~~l~~L~l~~~~~l~---~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~ 209 (234)
.|..|++++|...+. ... +... .++ ..|.++||...- .+..-...+++|.+||+++|..++. +-.+ +
T Consensus 261 ~L~~LNlsWc~l~~~-~Vtv~V~hise~l---~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~--~ 334 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTE-KVTVAVAHISETL---TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--F 334 (419)
T ss_pred hHhhcCchHhhccch-hhhHHHhhhchhh---hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH--H
Confidence 899999999973333 221 1111 245 889999875322 1333456789999999999988875 1123 6
Q ss_pred CCCCCCcEEecCCCcCC
Q 036876 210 IVNDALRIQHIGHLLAV 226 (234)
Q Consensus 210 ~~l~~L~~l~l~~c~~l 226 (234)
.+++.|+++.++.|=-+
T Consensus 335 ~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDI 351 (419)
T ss_pred HhcchheeeehhhhcCC
Confidence 78999999999999554
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.57 E-value=0.0015 Score=52.25 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=5.7
Q ss_pred CCCCcEEEcccC
Q 036876 135 YSKLNQIIHVAC 146 (234)
Q Consensus 135 l~~L~~L~l~~~ 146 (234)
+++|++|.++.|
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 344455555444
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.54 E-value=0.0013 Score=52.56 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=29.2
Q ss_pred EEEEEeeCCCCC---CCCCCccC-CCCccEEEecCCccccc--cccccCCCCCcEEEcccCc
Q 036876 92 EVKYLHWHGYPL---KSLPSNLS-AEKLVLLEVPGSSIEQL--WDGVKHYSKLNQIIHVACK 147 (234)
Q Consensus 92 ~L~~L~l~~~~~---~~lp~~~~-l~~L~~L~l~~~~l~~l--~~~~~~l~~L~~L~l~~~~ 147 (234)
+|++|.++.|.. ..++.... +++|++++++.|+++.+ -+.+..+.+|..|++.+|.
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 666666666521 22222222 46666666666666532 1224455556666666665
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.39 E-value=0.00033 Score=58.18 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=105.0
Q ss_pred hhCCCCCcceEEecCCCCCCCCccc-------ccccCCCCcc-EEEEEeeCCCCCCCCCCc-----cC-CCCccEEEecC
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCK-------VSYLQDLGFV-EVKYLHWHGYPLKSLPSN-----LS-AEKLVLLEVPG 122 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~-------~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-----~~-l~~L~~L~l~~ 122 (234)
.+..+..|+.|.+.+|.+.-..... +....-..+- +||++....|.+..-+.. ++ .+.|+.+.+++
T Consensus 115 ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q 194 (382)
T KOG1909|consen 115 LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ 194 (382)
T ss_pred HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEec
Confidence 3557889999999999653211000 0011112222 899999999998776643 34 67899999999
Q ss_pred Ccccc-----ccccccCCCCCcEEEcccCccccc---CCCC-CCCCCCCCCccEEEecCCCCCCcc----ccc-ccCCCC
Q 036876 123 SSIEQ-----LWDGVKHYSKLNQIIHVACKKLIA---KTPN-PTLMPHLNKLVILILRGSKSLKSL----PAE-IFNLEC 188 (234)
Q Consensus 123 ~~l~~-----l~~~~~~l~~L~~L~l~~~~~l~~---~lp~-~~~l~~L~~l~~L~l~~~~~l~~l----p~~-~~~l~~ 188 (234)
|.+.. +...+...++|+.||+..|.+-.. .+.. ++.+++| +.|.+++|..-..- -.. -...++
T Consensus 195 N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L---~El~l~dcll~~~Ga~a~~~al~~~~p~ 271 (382)
T KOG1909|consen 195 NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL---RELNLGDCLLENEGAIAFVDALKESAPS 271 (382)
T ss_pred ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh---eeecccccccccccHHHHHHHHhccCCC
Confidence 97762 334577899999999999973221 0112 3445555 99999998543321 112 224688
Q ss_pred CCEEeccCCCCCCc----CCCcccCCCCCCCcEEecCCCcC
Q 036876 189 LTELDLSDCSKLKR----LPEILSGIVNDALRIQHIGHLLA 225 (234)
Q Consensus 189 L~~L~l~~c~~l~~----lp~~~~~~~l~~L~~l~l~~c~~ 225 (234)
|+.+.+.+|..... +-.. +...+.|..|++++|.-
T Consensus 272 L~vl~l~gNeIt~da~~~la~~--~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 272 LEVLELAGNEITRDAALALAAC--MAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CceeccCcchhHHHHHHHHHHH--HhcchhhHHhcCCcccc
Confidence 99999998643211 1111 34578899999998865
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=6.8e-05 Score=60.61 Aligned_cols=84 Identities=13% Similarity=0.064 Sum_probs=53.8
Q ss_pred CCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccc--cccCCC
Q 036876 60 KMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWD--GVKHYS 136 (234)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~--~~~~l~ 136 (234)
.+.+.+.|+..+|.+... .....+ .|.+|.++=|.+.++-+...+.+|++|+|..|.|..+.+ -+++++
T Consensus 17 dl~~vkKLNcwg~~L~DI--------sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--------SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccHH--------HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 345666777777754311 111223 577777777777776544447788888888887776533 266777
Q ss_pred CCcEEEcccCccccc
Q 036876 137 KLNQIIHVACKKLIA 151 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~ 151 (234)
+|++|.|..|.....
T Consensus 89 sLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGE 103 (388)
T ss_pred hhhhHhhccCCcccc
Confidence 788887777775554
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.20 E-value=0.0034 Score=30.49 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=11.1
Q ss_pred ccEEEecCCcccccccccc
Q 036876 115 LVLLEVPGSSIEQLWDGVK 133 (234)
Q Consensus 115 L~~L~l~~~~l~~l~~~~~ 133 (234)
|++|++++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666666655543
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.92 E-value=0.0032 Score=51.03 Aligned_cols=135 Identities=16% Similarity=0.218 Sum_probs=87.1
Q ss_pred hhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-----EEEEEeeCCCCCCCCCCc--------------cC-CCCc
Q 036876 56 NTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-----EVKYLHWHGYPLKSLPSN--------------LS-AEKL 115 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-----~L~~L~l~~~~~~~lp~~--------------~~-l~~L 115 (234)
.++.+||.|+..++|.|.|.. .+|+-+..+ .|..|.+++|.++.+... .. .+.|
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~------~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~L 159 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGS------EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKL 159 (388)
T ss_pred HHHhcCCcceeeeccccccCc------ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCc
Confidence 456689999999999997653 445443333 799999999987654321 12 5789
Q ss_pred cEEEecCCcccccccc-----ccCCCCCcEEEcccCccccc-CCCC--CCCCCCCCCccEEEecCCCCCCc----ccccc
Q 036876 116 VLLEVPGSSIEQLWDG-----VKHYSKLNQIIHVACKKLIA-KTPN--PTLMPHLNKLVILILRGSKSLKS----LPAEI 183 (234)
Q Consensus 116 ~~L~l~~~~l~~l~~~-----~~~l~~L~~L~l~~~~~l~~-~lp~--~~~l~~L~~l~~L~l~~~~~l~~----lp~~~ 183 (234)
+.....+|++...+.. +..-.+|+.+.+..|. +.. .+.. +-++..+.+|+.|++.+|..... +...+
T Consensus 160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 9999999998866542 3444678888888887 332 0111 12222223449999998543221 22344
Q ss_pred cCCCCCCEEeccCC
Q 036876 184 FNLECLTELDLSDC 197 (234)
Q Consensus 184 ~~l~~L~~L~l~~c 197 (234)
...+.|+.|.+.+|
T Consensus 239 ~~W~~lrEL~lnDC 252 (388)
T COG5238 239 CEWNLLRELRLNDC 252 (388)
T ss_pred cccchhhhccccch
Confidence 45566888888888
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.0012 Score=54.00 Aligned_cols=84 Identities=13% Similarity=0.117 Sum_probs=56.0
Q ss_pred CCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc--cCCCCccEEEecCCccc--cccccccC
Q 036876 60 KMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN--LSAEKLVLLEVPGSSIE--QLWDGVKH 134 (234)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~--~~l~~L~~L~l~~~~l~--~l~~~~~~ 134 (234)
.++.++.+++.+|.++.++ .+-..+..+ .|++|+++.|++...-.. ..+.+|+.+-+.+..+. .....+..
T Consensus 69 ~~~~v~elDL~~N~iSdWs----eI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWS----EIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HhhhhhhhhcccchhccHH----HHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 4667888899988766432 222334556 889999998875432222 23678888888876555 44445677
Q ss_pred CCCCcEEEcccCc
Q 036876 135 YSKLNQIIHVACK 147 (234)
Q Consensus 135 l~~L~~L~l~~~~ 147 (234)
+++++.+.++.|+
T Consensus 145 lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 145 LPKVTELHMSDNS 157 (418)
T ss_pred chhhhhhhhccch
Confidence 7888888888774
No 64
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.65 E-value=0.024 Score=25.56 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=5.7
Q ss_pred CccEEEecCCccccc
Q 036876 114 KLVLLEVPGSSIEQL 128 (234)
Q Consensus 114 ~L~~L~l~~~~l~~l 128 (234)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344555555544443
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.53 E-value=0.025 Score=46.08 Aligned_cols=36 Identities=6% Similarity=0.115 Sum_probs=20.2
Q ss_pred CCCccEEEecCCccc-ccccc----ccCCCCCcEEEcccCc
Q 036876 112 AEKLVLLEVPGSSIE-QLWDG----VKHYSKLNQIIHVACK 147 (234)
Q Consensus 112 l~~L~~L~l~~~~l~-~l~~~----~~~l~~L~~L~l~~~~ 147 (234)
+++++..+++.|.+. ..|+. +.+-..|.+|.+++|.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 566666666666554 23332 3445556666666665
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.37 E-value=0.32 Score=34.45 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=8.8
Q ss_pred CchhhCCCCCcceEEecC
Q 036876 54 NPNTFTKMPKLRFLKFYS 71 (234)
Q Consensus 54 ~~~~~~~l~~L~~L~l~~ 71 (234)
+...|.++++|+.+.+..
T Consensus 4 ~~~~F~~~~~l~~i~~~~ 21 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN 21 (129)
T ss_dssp -TTTTTT-TT--EEEETS
T ss_pred CHHHHhCCCCCCEEEECC
Confidence 345566677777776663
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.0013 Score=53.43 Aligned_cols=57 Identities=23% Similarity=0.162 Sum_probs=25.7
Q ss_pred CCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCcc--C-CCCccEEEecCC
Q 036876 59 TKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNL--S-AEKLVLLEVPGS 123 (234)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~--~-l~~L~~L~l~~~ 123 (234)
.+|+.|++|.++-|.++ .-..+..+ +|+.|++..|.+..+.+-. . +++|+.|+|..|
T Consensus 38 ~kMp~lEVLsLSvNkIs--------sL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKIS--------SLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhcccceeEEeeccccc--------cchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 35555555555555332 11222333 4555555555544443221 2 455555555544
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.58 E-value=0.015 Score=45.03 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=45.6
Q ss_pred CccEEEecCCccc-cccccccCCCCCcEEEcccCcccccCCC--CCCCCCCCCCccEEEecCCCCCCccc-ccccCCCCC
Q 036876 114 KLVLLEVPGSSIE-QLWDGVKHYSKLNQIIHVACKKLIAKTP--NPTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECL 189 (234)
Q Consensus 114 ~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~~lp--~~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L 189 (234)
.++.++-+.+.+. +--+.+..++.++.|.+.+|..+.+ .- .++++. ++|+.|++++|..+++-. ..+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD-~~L~~l~~~~--~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD-WCLERLGGLA--PSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh-HHHHHhcccc--cchheeeccCCCeechhHHHHHHHhhhh
Confidence 3555555554444 2234456677777777777765543 21 133321 334888888887777643 345566667
Q ss_pred CEEeccC
Q 036876 190 TELDLSD 196 (234)
Q Consensus 190 ~~L~l~~ 196 (234)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7666654
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=0.013 Score=45.45 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=61.2
Q ss_pred CCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCccc-cccc-CCCCCCEEeccCCCCCCcCCCcccCCCCCC
Q 036876 137 KLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLP-AEIF-NLECLTELDLSDCSKLKRLPEILSGIVNDA 214 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~-~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~ 214 (234)
.++.++.+++. +.. .. +..+.+++.++.|.+.+|..+..-. ..++ -.++|+.|++++|+.+++-.-.- +..+++
T Consensus 102 ~IeaVDAsds~-I~~-eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMY-EG-LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKN 177 (221)
T ss_pred eEEEEecCCch-HHH-HH-HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhh
Confidence 46888888776 543 22 3344455555999999998776532 1222 35789999999998887643321 567899
Q ss_pred CcEEecCCCcCCChhh
Q 036876 215 LRIQHIGHLLAVRWKE 230 (234)
Q Consensus 215 L~~l~l~~c~~l~~~~ 230 (234)
|+.|.+.+.+.+.-+|
T Consensus 178 Lr~L~l~~l~~v~~~e 193 (221)
T KOG3864|consen 178 LRRLHLYDLPYVANLE 193 (221)
T ss_pred hHHHHhcCchhhhchH
Confidence 9999998877664443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.01 E-value=0.42 Score=33.84 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=12.5
Q ss_pred CCCccEEEecCCcccccccc-ccCCCCCcEEEcc
Q 036876 112 AEKLVLLEVPGSSIEQLWDG-VKHYSKLNQIIHV 144 (234)
Q Consensus 112 l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~ 144 (234)
+.+++.+.+..+ +..++.. +.+..+++.+.+.
T Consensus 34 ~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 34 CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp -TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred cccccccccccc-ccccceeeeeccccccccccc
Confidence 345555555443 4443332 3344455555554
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.87 E-value=0.17 Score=25.25 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=10.2
Q ss_pred CCccEEEecCCcccccccc
Q 036876 113 EKLVLLEVPGSSIEQLWDG 131 (234)
Q Consensus 113 ~~L~~L~l~~~~l~~l~~~ 131 (234)
.+|+.|++++|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555544
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.87 E-value=0.17 Score=25.25 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=10.2
Q ss_pred CCccEEEecCCcccccccc
Q 036876 113 EKLVLLEVPGSSIEQLWDG 131 (234)
Q Consensus 113 ~~L~~L~l~~~~l~~l~~~ 131 (234)
.+|+.|++++|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555544
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=88.84 E-value=0.089 Score=46.17 Aligned_cols=35 Identities=34% Similarity=0.387 Sum_probs=16.4
Q ss_pred cEEEecCCCCCCc--ccccccCCCCCCEEeccCCCCC
Q 036876 166 VILILRGSKSLKS--LPAEIFNLECLTELDLSDCSKL 200 (234)
Q Consensus 166 ~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c~~l 200 (234)
+.|.+.+|..++. +-.....++.|+++++++|..+
T Consensus 272 ~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 272 ETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred ceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 5555555543322 1122334455666666655443
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.76 E-value=0.15 Score=43.92 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=52.8
Q ss_pred EEEEEeeCCCC-CCCCCCc-c--CCCCccEEEecCCccc-c--ccccccCCCCCcEEEcccCcccccCC-----CC-CCC
Q 036876 92 EVKYLHWHGYP-LKSLPSN-L--SAEKLVLLEVPGSSIE-Q--LWDGVKHYSKLNQIIHVACKKLIAKT-----PN-PTL 158 (234)
Q Consensus 92 ~L~~L~l~~~~-~~~lp~~-~--~l~~L~~L~l~~~~l~-~--l~~~~~~l~~L~~L~l~~~~~l~~~l-----p~-~~~ 158 (234)
+|+++.+++|. +...... + ..+.|+.+++..+... . +-.--.+.+.|+.+.+++|..+++ - .. -..
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD-~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD-EGIRHLSSSSCS 399 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh-hhhhhhhhcccc
Confidence 67777776665 2222111 1 1455666666654222 1 111123456677777777665544 2 11 223
Q ss_pred CCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccCCCCC
Q 036876 159 MPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKL 200 (234)
Q Consensus 159 l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l 200 (234)
+..+ +.+.+++|+.+..-. ..+..+++|+.+++-+|...
T Consensus 400 ~~~l---~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 400 LEGL---EVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred cccc---ceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 3344 666777765554322 23445566666666666444
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.89 E-value=0.014 Score=46.33 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=25.5
Q ss_pred EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCc
Q 036876 92 EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACK 147 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~ 147 (234)
.+..|+++.+.+..+|..+. ...++.++.+.|..++.|.+.+..+++++++.-.+.
T Consensus 66 ~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 66 RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 33344444444444444443 444444444444444444444444444444444443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.63 E-value=0.015 Score=46.23 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=61.4
Q ss_pred EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEE
Q 036876 92 EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILI 169 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~ 169 (234)
....||++.+.+..+...++ +..+..|+++.|++..+|...+....++.+++..|. ... .|- ++..+++ +.++
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~-~p~s~~k~~~~---k~~e 117 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQ-QPKSQKKEPHP---KKNE 117 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhh-CCccccccCCc---chhh
Confidence 56677777777777777777 888888999999998888888888888888877776 777 887 7777777 8888
Q ss_pred ecCCC
Q 036876 170 LRGSK 174 (234)
Q Consensus 170 l~~~~ 174 (234)
..++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 87743
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.97 E-value=1 Score=22.47 Aligned_cols=16 Identities=13% Similarity=0.007 Sum_probs=10.8
Q ss_pred CCCcEEecCCCcCCCh
Q 036876 213 DALRIQHIGHLLAVRW 228 (234)
Q Consensus 213 ~~L~~l~l~~c~~l~~ 228 (234)
++|+.|++++|..++-
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5677777777777653
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.80 E-value=0.62 Score=23.50 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=8.8
Q ss_pred CccEEEecCCccccccc
Q 036876 114 KLVLLEVPGSSIEQLWD 130 (234)
Q Consensus 114 ~L~~L~l~~~~l~~l~~ 130 (234)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 44555555555555543
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=77.50 E-value=0.59 Score=40.96 Aligned_cols=113 Identities=21% Similarity=0.213 Sum_probs=52.1
Q ss_pred CCCccEEEecCCc-cccc-cccc-cCCCCCcEEEcccCccccc-CCCC-CCCCCCCCCccEEEecCCCCCCc--cccccc
Q 036876 112 AEKLVLLEVPGSS-IEQL-WDGV-KHYSKLNQIIHVACKKLIA-KTPN-PTLMPHLNKLVILILRGSKSLKS--LPAEIF 184 (234)
Q Consensus 112 l~~L~~L~l~~~~-l~~l-~~~~-~~l~~L~~L~l~~~~~l~~-~lp~-~~~l~~L~~l~~L~l~~~~~l~~--lp~~~~ 184 (234)
+.+|+.++++++. ++.. -..+ ..+++|++|.+.+|..++. .+-. ....++| +.|++++|..+.. +.....
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L---~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSL---RELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcc---cEEeeecCccchHHHHHHHHH
Confidence 5667777777755 3321 1111 1256777777666654332 0111 2223334 7777777766533 222333
Q ss_pred CCCCCCEEeccCCC---CCCcCCCcccCCCC--CCCcEEecCCCcCCCh
Q 036876 185 NLECLTELDLSDCS---KLKRLPEILSGIVN--DALRIQHIGHLLAVRW 228 (234)
Q Consensus 185 ~l~~L~~L~l~~c~---~l~~lp~~~~~~~l--~~L~~l~l~~c~~l~~ 228 (234)
++++++.+.+..+. .+...--.- .... ..+..+.+.+|+.++.
T Consensus 319 ~c~~l~~l~~~~~~~c~~l~~~~l~~-~~~~~~d~~~~~~~~~~~~l~~ 366 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNGCPSLTDLSLSG-LLTLTSDDLAELILRSCPKLTD 366 (482)
T ss_pred hCcchhhhhhhhcCCCccHHHHHHHH-hhccCchhHhHHHHhcCCCcch
Confidence 45555544433322 222211100 0111 1455666666666643
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.68 E-value=1.5 Score=37.98 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=19.5
Q ss_pred CCCCCCEEeccCCCCCCcC-----CCcccCCCCCCCcEEecCCCcCC
Q 036876 185 NLECLTELDLSDCSKLKRL-----PEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 185 ~l~~L~~L~l~~c~~l~~l-----p~~~~~~~l~~L~~l~l~~c~~l 226 (234)
+++.|+.+.+++|..+.+- ... ...+..|+.+.+++|+.+
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~--~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSS--SCSLEGLEVLELDNCPLI 414 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhc--cccccccceeeecCCCCc
Confidence 4455666666665444332 111 233445555555555544
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.78 E-value=2.2 Score=21.46 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=6.3
Q ss_pred CccEEEecCCccc
Q 036876 114 KLVLLEVPGSSIE 126 (234)
Q Consensus 114 ~L~~L~l~~~~l~ 126 (234)
+|+.|++++|+++
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4445555555443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.12 E-value=4.3 Score=19.51 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=5.1
Q ss_pred CccEEEecCCccc
Q 036876 114 KLVLLEVPGSSIE 126 (234)
Q Consensus 114 ~L~~L~l~~~~l~ 126 (234)
+|+.|++++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4445555544443
No 83
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=63.55 E-value=5.8 Score=18.63 Aligned_cols=19 Identities=53% Similarity=0.992 Sum_probs=13.3
Q ss_pred CccEEEecCCccccccccc
Q 036876 114 KLVLLEVPGSSIEQLWDGV 132 (234)
Q Consensus 114 ~L~~L~l~~~~l~~l~~~~ 132 (234)
+|..|++.++++++++++.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 3567778888877777653
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.15 E-value=12 Score=18.83 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=6.9
Q ss_pred CccEEEecCCccc
Q 036876 114 KLVLLEVPGSSIE 126 (234)
Q Consensus 114 ~L~~L~l~~~~l~ 126 (234)
+|++|++++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.75 E-value=11 Score=33.91 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=39.8
Q ss_pred CCccEEEecCCcccccccc---ccCCCCCcEEEcccCcc-cccCCCCCCCCCCCCCccEEEecCCCCCCccc---ccc--
Q 036876 113 EKLVLLEVPGSSIEQLWDG---VKHYSKLNQIIHVACKK-LIAKTPNPTLMPHLNKLVILILRGSKSLKSLP---AEI-- 183 (234)
Q Consensus 113 ~~L~~L~l~~~~l~~l~~~---~~~l~~L~~L~l~~~~~-l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp---~~~-- 183 (234)
+.+..+.++.|++..+..- ....++|+.|+|++|.. +.. -+++.++..+ -|+.|-+.||+.-+... ..+
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l-~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGL-PLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCC-CHHHeeecCCccccchhhhHHHHHH
Confidence 4566666777766655221 33466777888887711 222 2222222221 23777777754433322 112
Q ss_pred --cCCCCCCEEe
Q 036876 184 --FNLECLTELD 193 (234)
Q Consensus 184 --~~l~~L~~L~ 193 (234)
..+++|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 2466666554
Done!