Query 036876
Match_columns 234
No_of_seqs 131 out of 2587
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 10:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 2.9E-21 9.9E-26 161.2 13.4 161 58-232 123-297 (328)
2 4fcg_A Uncharacterized protein 99.8 4.5E-20 1.5E-24 154.0 13.9 157 55-223 143-311 (328)
3 1p9a_G Platelet glycoprotein I 99.8 8.5E-18 2.9E-22 137.9 17.6 165 43-224 36-206 (290)
4 2o6q_A Variable lymphocyte rec 99.8 2.3E-17 7.8E-22 133.7 18.3 166 44-224 43-216 (270)
5 1ozn_A Reticulon 4 receptor; N 99.8 2.5E-17 8.5E-22 134.4 17.5 158 52-224 46-212 (285)
6 1ozn_A Reticulon 4 receptor; N 99.8 2.3E-17 8E-22 134.5 15.7 173 37-225 57-237 (285)
7 3zyi_A Leucine-rich repeat-con 99.7 7.1E-17 2.4E-21 140.0 16.8 167 43-223 80-276 (452)
8 3m19_A Variable lymphocyte rec 99.7 1.7E-16 5.9E-21 127.2 17.7 149 62-224 35-190 (251)
9 3rfs_A Internalin B, repeat mo 99.7 1.3E-16 4.3E-21 129.5 17.0 153 56-224 57-216 (272)
10 1ogq_A PGIP-2, polygalacturona 99.7 1.1E-17 3.7E-22 138.6 9.7 177 36-226 50-257 (313)
11 3rgz_A Protein brassinosteroid 99.7 4.3E-17 1.5E-21 150.1 14.5 159 58-225 462-692 (768)
12 2z62_A TOLL-like receptor 4, v 99.7 5.5E-17 1.9E-21 131.7 13.3 132 92-228 101-245 (276)
13 1p9a_G Platelet glycoprotein I 99.7 1.5E-16 5E-21 130.5 15.4 155 62-230 31-189 (290)
14 1ogq_A PGIP-2, polygalacturona 99.7 1.7E-17 6E-22 137.3 9.9 157 55-224 94-279 (313)
15 3rgz_A Protein brassinosteroid 99.7 3.7E-17 1.3E-21 150.5 13.0 170 44-225 472-716 (768)
16 3zyj_A Leucine-rich repeat-con 99.7 1.9E-16 6.6E-21 136.8 16.6 89 51-145 77-169 (440)
17 3zyj_A Leucine-rich repeat-con 99.7 3.4E-16 1.2E-20 135.3 16.9 168 44-223 94-289 (440)
18 1h6u_A Internalin H; cell adhe 99.7 2E-16 6.8E-21 130.7 14.5 149 57-225 58-207 (308)
19 2z66_A Variable lymphocyte rec 99.7 4.3E-17 1.5E-21 134.2 9.9 167 52-225 42-235 (306)
20 2o6q_A Variable lymphocyte rec 99.7 1E-15 3.5E-20 123.9 17.9 153 62-229 37-197 (270)
21 3zyi_A Leucine-rich repeat-con 99.7 3.4E-16 1.2E-20 135.7 16.1 165 44-224 105-301 (452)
22 2xwt_C Thyrotropin receptor; s 99.7 5.9E-17 2E-21 128.9 10.2 171 38-224 33-216 (239)
23 4ezg_A Putative uncharacterize 99.7 7.7E-17 2.6E-21 124.6 9.9 148 59-224 41-192 (197)
24 1h6t_A Internalin B; cell adhe 99.7 1.4E-16 4.8E-21 130.6 12.0 149 56-224 62-211 (291)
25 1h6u_A Internalin H; cell adhe 99.7 2.3E-16 7.7E-21 130.4 13.2 146 58-224 81-228 (308)
26 3o6n_A APL1; leucine-rich repe 99.7 1.1E-15 3.8E-20 129.9 17.7 167 52-229 83-311 (390)
27 2z80_A TOLL-like receptor 2, v 99.7 2E-17 6.8E-22 139.0 6.7 160 53-224 67-233 (353)
28 3oja_B Anopheles plasmodium-re 99.7 7.1E-16 2.4E-20 138.2 16.9 168 52-230 89-318 (597)
29 2id5_A Lingo-1, leucine rich r 99.7 5.7E-16 2E-20 135.0 15.9 170 43-226 37-213 (477)
30 2ft3_A Biglycan; proteoglycan, 99.7 7.1E-16 2.4E-20 128.4 15.4 166 44-224 60-275 (332)
31 2z66_A Variable lymphocyte rec 99.7 2.9E-16 9.9E-21 129.2 11.9 154 57-225 96-260 (306)
32 2xwt_C Thyrotropin receptor; s 99.7 3.3E-16 1.1E-20 124.5 11.8 172 35-226 54-239 (239)
33 1xku_A Decorin; proteoglycan, 99.7 1.7E-15 5.9E-20 125.9 16.1 166 43-224 57-274 (330)
34 3o53_A Protein LRIM1, AGAP0063 99.7 2.7E-16 9.1E-21 130.3 10.6 126 92-226 121-250 (317)
35 1xeu_A Internalin C; cellular 99.7 3.4E-16 1.1E-20 126.6 10.9 145 58-224 37-183 (263)
36 3vq2_A TLR4, TOLL-like recepto 99.7 6.8E-16 2.3E-20 138.1 13.7 131 87-224 419-556 (606)
37 1xku_A Decorin; proteoglycan, 99.7 2.1E-15 7.1E-20 125.4 15.7 131 88-227 167-307 (330)
38 2z62_A TOLL-like receptor 4, v 99.7 7.3E-16 2.5E-20 125.0 12.5 172 43-229 33-216 (276)
39 4eco_A Uncharacterized protein 99.7 6.8E-16 2.3E-20 139.4 13.4 146 63-224 403-598 (636)
40 3oja_A Leucine-rich immune mol 99.7 4.6E-16 1.6E-20 136.3 11.8 126 92-226 121-250 (487)
41 3o6n_A APL1; leucine-rich repe 99.7 1.5E-15 5.3E-20 129.0 14.4 111 51-173 58-175 (390)
42 3e6j_A Variable lymphocyte rec 99.7 4.1E-15 1.4E-19 117.7 15.7 124 92-223 41-169 (229)
43 4ecn_A Leucine-rich repeat pro 99.7 2.6E-16 8.8E-21 146.1 10.0 160 55-224 441-630 (876)
44 3oja_B Anopheles plasmodium-re 99.7 1.6E-15 5.6E-20 135.9 15.0 119 44-173 57-181 (597)
45 3m19_A Variable lymphocyte rec 99.7 3.9E-15 1.3E-19 119.3 15.4 145 43-199 40-191 (251)
46 2v9t_B SLIT homolog 2 protein 99.6 4.7E-15 1.6E-19 116.7 15.1 124 92-223 33-162 (220)
47 3vq2_A TLR4, TOLL-like recepto 99.6 1.8E-15 6.2E-20 135.4 14.2 181 37-230 351-538 (606)
48 1m9s_A Internalin B; cell inva 99.6 1.6E-15 5.5E-20 136.0 13.8 150 56-225 59-209 (605)
49 2id5_A Lingo-1, leucine rich r 99.6 2.6E-15 8.7E-20 130.8 14.6 149 44-205 62-218 (477)
50 4eco_A Uncharacterized protein 99.6 3.5E-15 1.2E-19 134.7 15.7 166 43-222 358-545 (636)
51 3v47_A TOLL-like receptor 5B a 99.6 7.1E-15 2.4E-19 127.1 17.0 107 109-223 294-405 (455)
52 2z81_A CD282 antigen, TOLL-lik 99.6 2.2E-16 7.5E-21 139.7 7.6 143 44-196 32-181 (549)
53 3t6q_A CD180 antigen; protein- 99.6 2.4E-15 8.2E-20 134.6 13.8 169 42-225 37-214 (606)
54 4fmz_A Internalin; leucine ric 99.6 1.7E-15 5.7E-20 126.7 11.7 155 58-224 173-344 (347)
55 4ecn_A Leucine-rich repeat pro 99.6 5.9E-16 2E-20 143.7 9.5 156 55-225 482-656 (876)
56 1h6t_A Internalin B; cell adhe 99.6 1.6E-15 5.6E-20 124.2 11.1 151 58-229 42-194 (291)
57 3rfs_A Internalin B, repeat mo 99.6 5.3E-15 1.8E-19 119.9 13.9 154 58-228 37-196 (272)
58 2z80_A TOLL-like receptor 2, v 99.6 1.6E-15 5.5E-20 127.3 11.1 155 62-230 52-215 (353)
59 2v70_A SLIT-2, SLIT homolog 2 99.6 9.4E-15 3.2E-19 114.9 14.8 143 65-224 14-164 (220)
60 2ft3_A Biglycan; proteoglycan, 99.6 6.1E-15 2.1E-19 122.7 14.1 161 53-226 138-307 (332)
61 3v47_A TOLL-like receptor 5B a 99.6 9.1E-15 3.1E-19 126.4 15.7 85 132-225 295-383 (455)
62 4fmz_A Internalin; leucine ric 99.6 7.6E-15 2.6E-19 122.6 14.3 148 57-223 61-209 (347)
63 2z63_A TOLL-like receptor 4, v 99.6 4E-15 1.4E-19 132.0 12.8 156 55-224 366-529 (570)
64 1ziw_A TOLL-like receptor 3; i 99.6 8.3E-15 2.8E-19 132.8 15.0 162 53-222 421-618 (680)
65 1wwl_A Monocyte differentiatio 99.6 1.2E-15 4E-20 126.2 8.5 170 36-225 95-286 (312)
66 3t6q_A CD180 antigen; protein- 99.6 1.6E-14 5.4E-19 129.3 16.4 169 43-224 259-460 (606)
67 4glp_A Monocyte differentiatio 99.6 1.8E-15 6.3E-20 124.8 9.5 86 59-147 114-208 (310)
68 2z81_A CD282 antigen, TOLL-lik 99.6 3.3E-15 1.1E-19 132.1 11.6 156 62-229 26-188 (549)
69 2z7x_B TOLL-like receptor 1, v 99.6 1.1E-14 3.9E-19 128.0 13.8 89 52-147 35-126 (520)
70 2z7x_B TOLL-like receptor 1, v 99.6 1.4E-14 4.6E-19 127.5 14.1 152 59-225 321-480 (520)
71 2o6s_A Variable lymphocyte rec 99.6 8.7E-15 3E-19 113.8 11.0 123 62-197 28-158 (208)
72 2o6s_A Variable lymphocyte rec 99.6 8.5E-14 2.9E-18 108.2 16.0 144 65-224 10-159 (208)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.6E-14 9E-19 127.0 14.8 98 43-147 57-157 (562)
74 1wwl_A Monocyte differentiatio 99.6 4.2E-15 1.4E-19 122.8 9.0 157 60-229 93-269 (312)
75 2z63_A TOLL-like receptor 4, v 99.6 8.3E-15 2.8E-19 130.0 11.4 166 44-223 34-210 (570)
76 3bz5_A Internalin-J, INLJ; leu 99.6 2.1E-14 7.3E-19 124.8 13.6 142 57-224 59-202 (457)
77 4glp_A Monocyte differentiatio 99.6 4.1E-15 1.4E-19 122.7 8.1 153 58-224 141-305 (310)
78 3bz5_A Internalin-J, INLJ; leu 99.6 9E-14 3.1E-18 120.8 16.9 142 58-225 81-224 (457)
79 1m9s_A Internalin B; cell inva 99.6 9.9E-15 3.4E-19 130.9 10.9 151 58-229 39-191 (605)
80 1ziw_A TOLL-like receptor 3; i 99.6 2.3E-14 8E-19 129.9 13.5 169 37-220 26-202 (680)
81 2ell_A Acidic leucine-rich nuc 99.6 1.3E-14 4.6E-19 109.0 9.8 131 61-205 23-164 (168)
82 3j0a_A TOLL-like receptor 5; m 99.6 2.1E-14 7.1E-19 133.5 13.0 173 36-223 24-214 (844)
83 3cvr_A Invasion plasmid antige 99.6 4.9E-14 1.7E-18 125.4 14.9 116 92-226 121-243 (571)
84 3e6j_A Variable lymphocyte rec 99.6 6.1E-14 2.1E-18 110.9 13.8 127 62-200 40-172 (229)
85 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 6.6E-14 2.3E-18 124.4 15.4 152 59-225 350-509 (562)
86 2ell_A Acidic leucine-rich nuc 99.6 5.1E-15 1.7E-19 111.3 6.7 131 92-231 25-165 (168)
87 1o6v_A Internalin A; bacterial 99.6 5.7E-14 2E-18 122.2 14.1 123 92-226 244-366 (466)
88 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4.1E-18 106.4 13.9 120 95-223 14-136 (193)
89 1xeu_A Internalin C; cellular 99.5 6.2E-15 2.1E-19 119.1 6.9 144 61-226 18-163 (263)
90 1o6v_A Internalin A; bacterial 99.5 5.5E-14 1.9E-18 122.2 13.0 154 56-229 237-391 (466)
91 2v9t_B SLIT homolog 2 protein 99.5 1.1E-13 3.9E-18 108.7 13.3 124 62-198 32-163 (220)
92 2xot_A Amphoterin-induced prot 99.5 2E-14 6.8E-19 121.2 9.3 148 62-224 39-200 (361)
93 4ezg_A Putative uncharacterize 99.5 3.7E-14 1.3E-18 109.5 9.6 131 89-228 41-174 (197)
94 4g8a_A TOLL-like receptor 4; l 99.5 4.2E-14 1.4E-18 126.5 11.1 129 63-205 53-190 (635)
95 2xot_A Amphoterin-induced prot 99.5 1.4E-13 4.8E-18 115.9 13.6 150 64-229 20-179 (361)
96 4g8a_A TOLL-like receptor 4; l 99.5 5.7E-14 1.9E-18 125.7 10.7 166 43-223 57-234 (635)
97 4b8c_D Glucose-repressible alc 99.5 4.2E-14 1.4E-18 129.5 9.5 123 95-226 205-329 (727)
98 3j0a_A TOLL-like receptor 5; m 99.5 1.3E-13 4.5E-18 128.1 12.9 153 60-225 22-186 (844)
99 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-14 5.3E-19 109.6 5.3 101 114-224 43-151 (176)
100 4ay9_X Follicle-stimulating ho 99.5 1.4E-13 4.7E-18 115.5 11.2 172 37-226 31-236 (350)
101 1w8a_A SLIT protein; signaling 99.5 4.4E-13 1.5E-17 103.1 13.1 99 92-196 30-135 (192)
102 2v70_A SLIT-2, SLIT homolog 2 99.5 3.8E-13 1.3E-17 105.7 12.9 125 62-199 32-165 (220)
103 3o53_A Protein LRIM1, AGAP0063 99.5 2.5E-15 8.4E-20 124.5 0.3 149 59-222 117-271 (317)
104 2je0_A Acidic leucine-rich nuc 99.5 2.6E-14 9E-19 105.3 5.7 107 106-221 34-148 (149)
105 1a9n_A U2A', U2A'; complex (nu 99.5 4.7E-14 1.6E-18 107.0 7.0 128 56-198 13-151 (176)
106 3oja_A Leucine-rich immune mol 99.5 3.9E-14 1.3E-18 124.0 7.5 175 37-230 35-231 (487)
107 3g06_A SSPH2 (leucine-rich rep 99.5 1E-12 3.5E-17 118.1 16.8 54 166-226 244-297 (622)
108 1jl5_A Outer protein YOPM; leu 99.5 1.3E-12 4.3E-17 113.5 16.7 118 88-223 149-267 (454)
109 2ast_B S-phase kinase-associat 99.5 4.8E-15 1.6E-19 123.2 1.2 155 57-223 113-282 (336)
110 2je0_A Acidic leucine-rich nuc 99.5 3.7E-14 1.3E-18 104.4 5.8 123 61-196 16-149 (149)
111 3cvr_A Invasion plasmid antige 99.5 1.1E-12 3.7E-17 116.8 15.9 138 62-231 80-225 (571)
112 4ay9_X Follicle-stimulating ho 99.5 5.6E-13 1.9E-17 111.8 13.3 154 52-222 94-255 (350)
113 3g06_A SSPH2 (leucine-rich rep 99.5 1.4E-12 4.8E-17 117.2 16.3 15 61-75 80-94 (622)
114 1w8a_A SLIT protein; signaling 99.5 4.5E-13 1.5E-17 103.0 11.4 100 63-173 30-136 (192)
115 1jl5_A Outer protein YOPM; leu 99.5 2.1E-12 7.2E-17 112.1 16.8 139 57-223 148-287 (454)
116 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.7E-19 133.3 2.4 114 55-180 217-333 (727)
117 1dce_A Protein (RAB geranylger 99.5 2.8E-13 9.7E-18 120.6 10.9 118 92-219 442-566 (567)
118 2o6r_A Variable lymphocyte rec 99.4 2.4E-12 8.1E-17 97.5 14.2 123 94-225 10-136 (177)
119 2wfh_A SLIT homolog 2 protein 99.4 1.8E-12 6.1E-17 99.8 12.4 119 65-197 13-136 (193)
120 2ast_B S-phase kinase-associat 99.4 2.2E-14 7.5E-19 119.2 0.2 160 58-227 89-261 (336)
121 1dce_A Protein (RAB geranylger 99.4 1.9E-12 6.4E-17 115.4 9.3 117 63-194 442-567 (567)
122 2o6r_A Variable lymphocyte rec 99.3 2.5E-11 8.4E-16 91.8 12.1 101 92-198 29-135 (177)
123 2r9u_A Variable lymphocyte rec 99.3 2.5E-11 8.5E-16 91.8 11.5 97 94-197 15-115 (174)
124 1ds9_A Outer arm dynein; leuci 99.3 1.2E-15 4.3E-20 117.9 -12.8 82 57-147 43-126 (198)
125 2ca6_A RAN GTPase-activating p 99.3 2.1E-13 7.3E-18 115.6 -1.6 17 59-75 91-107 (386)
126 2ca6_A RAN GTPase-activating p 99.3 3.5E-13 1.2E-17 114.3 -0.4 157 57-224 55-255 (386)
127 3g39_A Variable lymphocyte rec 99.3 4.1E-11 1.4E-15 90.2 11.0 97 94-197 12-112 (170)
128 2r9u_A Variable lymphocyte rec 99.2 1.4E-10 4.9E-15 87.6 11.8 100 115-224 14-116 (174)
129 3g39_A Variable lymphocyte rec 99.2 2E-10 6.9E-15 86.4 11.8 101 114-224 10-113 (170)
130 1ds9_A Outer arm dynein; leuci 99.1 3E-13 1E-17 104.4 -6.4 156 60-223 16-184 (198)
131 3goz_A Leucine-rich repeat-con 99.1 3.8E-12 1.3E-16 107.1 -0.8 126 92-224 110-264 (362)
132 3goz_A Leucine-rich repeat-con 99.1 7.2E-12 2.5E-16 105.4 -1.0 176 38-225 24-237 (362)
133 3sb4_A Hypothetical leucine ri 99.0 5.4E-09 1.8E-13 86.7 14.2 98 112-219 225-327 (329)
134 2ifg_A High affinity nerve gro 98.9 4.4E-09 1.5E-13 87.7 10.3 94 96-197 13-113 (347)
135 1z7x_W Ribonuclease inhibitor; 98.9 9.8E-12 3.4E-16 107.4 -7.0 36 186-224 369-409 (461)
136 1z7x_W Ribonuclease inhibitor; 98.9 1.7E-11 5.9E-16 105.9 -5.9 19 179-197 390-408 (461)
137 2ifg_A High affinity nerve gro 98.9 7.5E-09 2.6E-13 86.2 10.2 95 66-174 12-114 (347)
138 3ogk_B Coronatine-insensitive 98.9 3E-10 1E-14 101.0 0.6 136 59-198 161-304 (592)
139 3sb4_A Hypothetical leucine ri 98.8 4.1E-08 1.4E-12 81.3 10.2 153 52-222 83-306 (329)
140 3ogk_B Coronatine-insensitive 98.7 1.5E-09 5E-14 96.6 -1.7 63 58-122 188-252 (592)
141 2p1m_B Transport inhibitor res 98.6 1.1E-09 3.6E-14 97.5 -3.2 124 60-193 103-241 (594)
142 2p1m_B Transport inhibitor res 98.6 9.6E-10 3.3E-14 97.8 -5.5 83 60-147 128-222 (594)
143 4fdw_A Leucine rich hypothetic 98.5 4.1E-06 1.4E-10 71.4 14.4 153 52-223 170-355 (401)
144 3un9_A NLR family member X1; l 98.4 6.6E-09 2.3E-13 87.8 -4.0 125 62-197 101-249 (372)
145 3un9_A NLR family member X1; l 98.4 1.3E-08 4.6E-13 85.9 -2.5 154 61-224 71-250 (372)
146 3e4g_A ATP synthase subunit S, 98.4 2.1E-07 7.2E-12 70.0 3.9 88 114-202 62-154 (176)
147 3e4g_A ATP synthase subunit S, 98.3 1.8E-07 6.1E-12 70.4 2.9 96 128-230 53-156 (176)
148 2ra8_A Uncharacterized protein 98.3 1.6E-07 5.5E-12 78.9 1.5 187 32-224 103-318 (362)
149 4fdw_A Leucine rich hypothetic 98.3 1.3E-05 4.5E-10 68.2 13.0 57 88-145 176-235 (401)
150 3rw6_A Nuclear RNA export fact 97.8 9.6E-06 3.3E-10 65.1 3.5 14 134-147 168-181 (267)
151 2ra8_A Uncharacterized protein 97.7 1.8E-05 6.3E-10 66.4 2.9 132 56-198 166-318 (362)
152 1io0_A Tropomodulin; LRR prote 97.4 2.8E-05 9.5E-10 58.9 0.4 105 112-224 35-162 (185)
153 3rw6_A Nuclear RNA export fact 97.4 0.0001 3.5E-09 59.2 3.5 79 112-193 169-257 (267)
154 1io0_A Tropomodulin; LRR prote 97.3 1.6E-05 5.6E-10 60.2 -1.7 20 56-75 30-50 (185)
155 4fs7_A Uncharacterized protein 97.1 0.011 3.9E-07 49.6 13.5 79 132-221 293-374 (394)
156 4fs7_A Uncharacterized protein 97.0 0.0055 1.9E-07 51.5 10.3 94 112-218 296-393 (394)
157 4h09_A Hypothetical leucine ri 96.8 0.018 6.2E-07 47.9 12.4 98 112-220 239-340 (379)
158 3rfe_A Platelet glycoprotein I 96.7 0.0032 1.1E-07 44.6 5.9 52 95-147 12-66 (130)
159 4h09_A Hypothetical leucine ri 96.6 0.029 9.9E-07 46.6 12.0 131 56-205 211-349 (379)
160 4gt6_A Cell surface protein; l 96.5 0.018 6.1E-07 48.4 10.3 100 112-222 264-366 (394)
161 4gt6_A Cell surface protein; l 95.8 0.038 1.3E-06 46.3 8.5 95 112-220 287-385 (394)
162 3rfe_A Platelet glycoprotein I 95.7 0.024 8.2E-07 40.0 5.9 52 139-198 11-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 84.4 0.66 2.3E-05 35.1 3.0 13 114-126 71-83 (197)
164 1pgv_A TMD-1, tropomodulin TMD 78.9 0.48 1.7E-05 35.8 0.4 87 58-146 37-136 (197)
165 2lz0_A Uncharacterized protein 46.4 36 0.0012 22.2 4.7 42 149-196 8-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.9e-21 Score=161.21 Aligned_cols=161 Identities=21% Similarity=0.252 Sum_probs=108.1
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCC-CCCCCCccC----------CCCccEEEecCCcc
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYP-LKSLPSNLS----------AEKLVLLEVPGSSI 125 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~-~~~lp~~~~----------l~~L~~L~l~~~~l 125 (234)
+.++++|++|++++|.+. .+|..+..+ +|++|++++|. .+.+|..+. +++|++|++++|++
T Consensus 123 ~~~l~~L~~L~Ls~n~l~-------~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 123 MQQFAGLETLTLARNPLR-------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp GGGGTTCSEEEEESCCCC-------CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred HhccCCCCEEECCCCccc-------cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc
Confidence 444555555555555443 445555555 56666665543 444554331 56666666666666
Q ss_pred ccccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCC
Q 036876 126 EQLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLP 204 (234)
Q Consensus 126 ~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 204 (234)
+.+|..++.+++|++|++++|. ++. +|. ++.+++| +.|++++|+....+|..++++++|++|++++|+.++.+|
T Consensus 196 ~~lp~~l~~l~~L~~L~L~~N~-l~~-l~~~l~~l~~L---~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 196 RSLPASIANLQNLKSLKIRNSP-LSA-LGPAIHHLPKL---EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp CCCCGGGGGCTTCCEEEEESSC-CCC-CCGGGGGCTTC---CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred CcchHhhcCCCCCCEEEccCCC-CCc-CchhhccCCCC---CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 6677677777777777777776 666 665 6666666 888888877777777778888888888888887888888
Q ss_pred CcccCCCCCCCcEEecCCCcCC-Chhhhh
Q 036876 205 EILSGIVNDALRIQHIGHLLAV-RWKEML 232 (234)
Q Consensus 205 ~~~~~~~l~~L~~l~l~~c~~l-~~~~~~ 232 (234)
.. ++.+++|+.|++++|..+ ..|+.+
T Consensus 271 ~~--~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 271 LD--IHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp TT--GGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred hh--hhcCCCCCEEeCCCCCchhhccHHH
Confidence 77 788888888888888776 355543
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4.5e-20 Score=153.96 Aligned_cols=157 Identities=25% Similarity=0.330 Sum_probs=141.6
Q ss_pred chhhCCCCCcceEEecCCCCCCCCcccccccCCCCc---------c-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCC
Q 036876 55 PNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGF---------V-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGS 123 (234)
Q Consensus 55 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~---------l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~ 123 (234)
+..+.++++|++|++++|.+.+ .+|..+.. + +|++|++++|.+..+|..+. +++|++|++++|
T Consensus 143 p~~l~~l~~L~~L~L~~n~~~~------~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 143 PASIASLNRLRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp CGGGGGCTTCCEEEEEEETTCC------CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS
T ss_pred cHHHhcCcCCCEEECCCCCCcc------ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC
Confidence 5578899999999999987665 56666543 6 99999999999999998887 999999999999
Q ss_pred ccccccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCc
Q 036876 124 SIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKR 202 (234)
Q Consensus 124 ~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 202 (234)
+++.+|..++.+++|++|++++|..... +|. ++.+++| +.|++++|+..+.+|..++++++|++|++++|+.++.
T Consensus 217 ~l~~l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L---~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 217 PLSALGPAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPL---KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp CCCCCCGGGGGCTTCCEEECTTCTTCCB-CCCCTTCCCCC---CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CCCcCchhhccCCCCCEEECcCCcchhh-hHHHhcCCCCC---CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 9999999999999999999999997777 888 8888887 9999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCcEEecCCC
Q 036876 203 LPEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 203 lp~~~~~~~l~~L~~l~l~~c 223 (234)
+|.. ++.+++|+.+.+...
T Consensus 293 iP~~--l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 293 LPSL--IAQLPANCIILVPPH 311 (328)
T ss_dssp CCGG--GGGSCTTCEEECCGG
T ss_pred ccHH--HhhccCceEEeCCHH
Confidence 9999 999999999988643
No 3
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=8.5e-18 Score=137.87 Aligned_cols=165 Identities=22% Similarity=0.213 Sum_probs=137.3
Q ss_pred EecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEe
Q 036876 43 LDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEV 120 (234)
Q Consensus 43 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l 120 (234)
++++.+....+.+..|..+++|+.|++++|.+. .++.. ..+ +|++|++++|.+..+|..+. +++|++|++
T Consensus 36 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-------KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp EECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-------EEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred EEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-------cccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEEC
Confidence 344444444455678999999999999999877 44443 566 89999999999999998876 999999999
Q ss_pred cCCccccccc-cccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccC
Q 036876 121 PGSSIEQLWD-GVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSD 196 (234)
Q Consensus 121 ~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~ 196 (234)
++|+++.+|. .+..+++|++|++++|. ++. +|. |..+++| +.|++++ +.++.+|. .+..+++|++|++++
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~~L---~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNE-LKT-LPPGLLTPTPKL---EKLSLAN-NNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSC-CCC-CCTTTTTTCTTC---CEEECTT-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCC-CCc-cChhhcccccCC---CEEECCC-CcCCccCHHHhcCcCCCCEEECCC
Confidence 9999998875 48899999999999998 887 775 6667777 9999998 57788885 467899999999998
Q ss_pred CCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 197 CSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 197 c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
+.+..+|.. +...++|+.+++++++
T Consensus 182 -N~l~~ip~~--~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 182 -NSLYTIPKG--FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -SCCCCCCTT--TTTTCCCSEEECCSCC
T ss_pred -CcCCccChh--hcccccCCeEEeCCCC
Confidence 678899998 8889999999998643
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.3e-17 Score=133.72 Aligned_cols=166 Identities=21% Similarity=0.247 Sum_probs=134.0
Q ss_pred ecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCC-CCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEE
Q 036876 44 DMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQD-LGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLE 119 (234)
Q Consensus 44 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~ 119 (234)
++.......+.+..|.++++|++|++++|.+. .++.. +..+ +|++|++++|.+..+|.. +. +++|++|+
T Consensus 43 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 43 DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-------TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp ECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-------CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred ECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-------eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 44444334455667889999999999999877 55544 4677 999999999999888864 45 89999999
Q ss_pred ecCCcccccccc-ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEecc
Q 036876 120 VPGSSIEQLWDG-VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLS 195 (234)
Q Consensus 120 l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~ 195 (234)
+++|+++.++.. ++.+++|++|++++|. ++. +|. |+.+++| +.|++++| .+..+|. .+..+++|++|+++
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L---~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQS-LPKGVFDKLTSL---KELRLYNN-QLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTC---CEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCc-CCc-cCHhHccCCccc---ceeEecCC-cCcEeChhHhccCCCcCEEECC
Confidence 999999988665 6889999999999998 887 775 6666677 99999984 6777764 58889999999999
Q ss_pred CCCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 196 DCSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 196 ~c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
+| .+..+|..+ +..+++|+.+++++++
T Consensus 190 ~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 190 NN-QLKRVPEGA-FDSLEKLKMLQLQENP 216 (270)
T ss_dssp SS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CC-cCCcCCHHH-hccccCCCEEEecCCC
Confidence 95 778888753 6789999999998754
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=2.5e-17 Score=134.36 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=94.9
Q ss_pred ecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCC-CCCC-CCccC-CCCccEEEecCCcccc
Q 036876 52 CLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYP-LKSL-PSNLS-AEKLVLLEVPGSSIEQ 127 (234)
Q Consensus 52 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~-~~~l-p~~~~-l~~L~~L~l~~~~l~~ 127 (234)
.+.+..|..+++|+.|++++|.+.+ ..+..+..+ +|++|++++|. +..+ |..+. +++|++|++++|++..
T Consensus 46 ~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 119 (285)
T 1ozn_A 46 HVPAASFRACRNLTILWLHSNVLAR------IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred ccCHHHcccCCCCCEEECCCCccce------eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE
Confidence 3444566777777777777776652 224556666 67777777665 5555 33444 6677777777776665
Q ss_pred c-cccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccCCCCCCcC
Q 036876 128 L-WDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDCSKLKRL 203 (234)
Q Consensus 128 l-~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~l 203 (234)
+ |..+..+++|++|++++|. ++. ++. ++.+++| +.|++++ +.++.+|. .+..+++|++|++++|. +..+
T Consensus 120 ~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L---~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 192 (285)
T 1ozn_A 120 LGPGLFRGLAALQYLYLQDNA-LQA-LPDDTFRDLGNL---THLFLHG-NRISSVPERAFRGLHSLDRLLLHQNR-VAHV 192 (285)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTC---CEEECCS-SCCCEECTTTTTTCTTCCEEECCSSC-CCEE
T ss_pred ECHhHhhCCcCCCEEECCCCc-ccc-cCHhHhccCCCc---cEEECCC-CcccccCHHHhcCccccCEEECCCCc-cccc
Confidence 5 3345666677777777665 555 543 4455555 6666666 34555553 35666666666666643 3333
Q ss_pred -CCcccCCCCCCCcEEecCCCc
Q 036876 204 -PEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 204 -p~~~~~~~l~~L~~l~l~~c~ 224 (234)
|.. +..+++|+.|++++|.
T Consensus 193 ~~~~--~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 193 HPHA--FRDLGRLMTLYLFANN 212 (285)
T ss_dssp CTTT--TTTCTTCCEEECCSSC
T ss_pred CHhH--ccCcccccEeeCCCCc
Confidence 444 5666666666666654
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2.3e-17 Score=134.51 Aligned_cols=173 Identities=16% Similarity=0.152 Sum_probs=137.3
Q ss_pred ceeeEEEecCCceeeecCchhhCCCCCcceEEecCCC-CCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCC-CccC-C
Q 036876 37 KIEGICLDMSKVKEICLNPNTFTKMPKLRFLKFYSSS-FNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLP-SNLS-A 112 (234)
Q Consensus 37 ~i~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp-~~~~-l 112 (234)
.++.+ +++......+.+..|..+++|++|++++|. +.. ..+..+..+ +|++|++++|.+..++ ..+. +
T Consensus 57 ~L~~L--~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 128 (285)
T 1ozn_A 57 NLTIL--WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128 (285)
T ss_dssp TCCEE--ECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCEE--ECCCCccceeCHhhcCCccCCCEEeCCCCCCccc------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC
Confidence 34444 334433344556789999999999999996 552 236677888 9999999999988775 4456 8
Q ss_pred CCccEEEecCCcccccccc-ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcc-cccccCCCC
Q 036876 113 EKLVLLEVPGSSIEQLWDG-VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSL-PAEIFNLEC 188 (234)
Q Consensus 113 ~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~l-p~~~~~l~~ 188 (234)
++|++|++++|+++.++.. ++.+++|++|++++|. ++. +|. +..+++| +.|++++| .+..+ |..++.+++
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L---~~L~l~~n-~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISS-VPERAFRGLHSL---DRLLLHQN-RVAHVHPHAFRDLGR 202 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCE-ECTTTTTTCTTC---CEEECCSS-CCCEECTTTTTTCTT
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccc-cCHHHhcCcccc---CEEECCCC-cccccCHhHccCccc
Confidence 9999999999999988765 7889999999999998 777 765 6667777 99999996 45554 778999999
Q ss_pred CCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcC
Q 036876 189 LTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLA 225 (234)
Q Consensus 189 L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~ 225 (234)
|+.|++++| .+..+|... +..+++|+.+++++++-
T Consensus 203 L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 203 LMTLYLFAN-NLSALPTEA-LAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCEEECCSS-CCSCCCHHH-HTTCTTCCEEECCSSCE
T ss_pred ccEeeCCCC-cCCcCCHHH-cccCcccCEEeccCCCc
Confidence 999999995 677777532 78899999999998753
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=7.1e-17 Score=140.01 Aligned_cols=167 Identities=18% Similarity=0.190 Sum_probs=95.7
Q ss_pred EecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEE
Q 036876 43 LDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLE 119 (234)
Q Consensus 43 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~ 119 (234)
+++..+....+.+..|.++++|+.|++++|.+.+ ..+..+..+ +|++|++++|.+..+|.. +. +++|++|+
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ------IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE------ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCccCC------cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 3444444344556778888888888888887763 234566777 788888888877777654 44 77788888
Q ss_pred ecCCccccccc-cccCCCCCcEEEcccCcc------------------------cccCCCCCCCCCCCCCccEEEecCCC
Q 036876 120 VPGSSIEQLWD-GVKHYSKLNQIIHVACKK------------------------LIAKTPNPTLMPHLNKLVILILRGSK 174 (234)
Q Consensus 120 l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~------------------------l~~~lp~~~~l~~L~~l~~L~l~~~~ 174 (234)
+++|+++.+|. .+..+++|++|++++|.. ++. +|.+..+.+| +.|++++|
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L---~~L~Ls~N- 228 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGL---EELEMSGN- 228 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTC---CEEECTTS-
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccc---cEEECcCC-
Confidence 88877776654 244444444444444333 333 3333333333 55555553
Q ss_pred CCCcc-cccccCCCCCCEEeccCCCCCCcC-CCcccCCCCCCCcEEecCCC
Q 036876 175 SLKSL-PAEIFNLECLTELDLSDCSKLKRL-PEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 175 ~l~~l-p~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~l~~L~~l~l~~c 223 (234)
.+..+ |..+.++++|+.|++++| .+..+ |.. +..+++|+.|+++++
T Consensus 229 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 229 HFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNA--FDGLASLVELNLAHN 276 (452)
T ss_dssp CCSEECGGGGTTCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECCSS
T ss_pred cCcccCcccccCccCCCEEEeCCC-cCceECHHH--hcCCCCCCEEECCCC
Confidence 33332 344555555555555553 33333 222 455555555555554
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.74 E-value=1.7e-16 Score=127.20 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=122.8
Q ss_pred CCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCcccccccc-ccCCCC
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIEQLWDG-VKHYSK 137 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~~l~~~-~~~l~~ 137 (234)
++++.|++++|.+.+ ..+..+..+ +|++|++++|.+..+++. +. +++|++|++++|+++.+|.. +..+++
T Consensus 35 ~~l~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQSTGLAT------LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEccCCCcCc------cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCC
Confidence 579999999998774 344567778 999999999998887754 55 89999999999999988755 688999
Q ss_pred CcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccCCCCCCcCCCcccCCCCCC
Q 036876 138 LNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDCSKLKRLPEILSGIVNDA 214 (234)
Q Consensus 138 L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~ 214 (234)
|++|++++|. ++. +|. |+.+++| +.|++++ +.+..+|. .++.+++|++|++++ +.+..+|+.. +..+++
T Consensus 109 L~~L~L~~N~-l~~-~~~~~~~~l~~L---~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~ 180 (251)
T 3m19_A 109 LDKLYLGGNQ-LKS-LPSGVFDRLTKL---KELRLNT-NQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGA-FDRLGK 180 (251)
T ss_dssp CCEEECCSSC-CCC-CCTTTTTTCTTC---CEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTT-TTTCTT
T ss_pred CCEEEcCCCc-CCC-cChhHhccCCcc---cEEECcC-CcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHH-HhCCCC
Confidence 9999999997 777 776 6667777 9999999 47777775 688999999999998 5677777632 788999
Q ss_pred CcEEecCCCc
Q 036876 215 LRIQHIGHLL 224 (234)
Q Consensus 215 L~~l~l~~c~ 224 (234)
|+.+++++++
T Consensus 181 L~~L~l~~N~ 190 (251)
T 3m19_A 181 LQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSCC
T ss_pred CCEEEeeCCc
Confidence 9999998764
No 9
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1.3e-16 Score=129.51 Aligned_cols=153 Identities=22% Similarity=0.283 Sum_probs=126.3
Q ss_pred hhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCcccccccc-
Q 036876 56 NTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIEQLWDG- 131 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~~l~~~- 131 (234)
..+..+++|+.|++++|.+.+ + ..+..+ +|++|++++|.+..+++. +. +++|++|++++|+++.++..
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~-------~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 128 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHD-------I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCC-------C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred cccccCCCCcEEECCCCCCCC-------c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHH
Confidence 457889999999999998763 2 356677 999999999999888765 45 89999999999999988766
Q ss_pred ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccCCCCCCcCCCccc
Q 036876 132 VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDCSKLKRLPEILS 208 (234)
Q Consensus 132 ~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~ 208 (234)
++.+++|++|++++|. ++. +|. ++.+++| +.|++++| .+..+|. .++.+++|++|++++| .+..+|+..
T Consensus 129 ~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L---~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~- 200 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQ-LQS-LPKGVFDKLTNL---TELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGV- 200 (272)
T ss_dssp TTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTC---CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT-
T ss_pred hccCCCCCEEECCCCc-cCc-cCHHHhccCccC---CEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccCHHH-
Confidence 6889999999999997 777 765 6677777 99999995 5666664 4788999999999995 566666642
Q ss_pred CCCCCCCcEEecCCCc
Q 036876 209 GIVNDALRIQHIGHLL 224 (234)
Q Consensus 209 ~~~l~~L~~l~l~~c~ 224 (234)
++.+++|+.+++++++
T Consensus 201 ~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCcCCCEEEccCCC
Confidence 6889999999998754
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=1.1e-17 Score=138.59 Aligned_cols=177 Identities=14% Similarity=0.146 Sum_probs=103.8
Q ss_pred cceeeEEEecCCceeeecCchhhCCCCCcceEEecC-CCCCCCCcccccccCCCCcc-EEEEEeeCCCCCC-CCCCccC-
Q 036876 36 KKIEGICLDMSKVKEICLNPNTFTKMPKLRFLKFYS-SSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLK-SLPSNLS- 111 (234)
Q Consensus 36 ~~i~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~-~lp~~~~- 111 (234)
..+..+.+....+.....-+..+.++++|++|++++ |.+.+ .+|..+..+ +|++|++++|.+. .+|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG------PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES------CCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc------cCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 345555554444332113346777888888888884 66554 456666666 7777777776655 5555555
Q ss_pred CCCccEEEecCCccc-cccccccCCCCCcEEEcccCcccc-cCCCC-CCCCC-CCCCccEEEecCCCCC-----------
Q 036876 112 AEKLVLLEVPGSSIE-QLWDGVKHYSKLNQIIHVACKKLI-AKTPN-PTLMP-HLNKLVILILRGSKSL----------- 176 (234)
Q Consensus 112 l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~~l~-~~lp~-~~~l~-~L~~l~~L~l~~~~~l----------- 176 (234)
+++|++|++++|++. .+|..++.+++|++|++++|. ++ . +|. ++.+. +| +.|++++|...
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~-~p~~l~~l~~~L---~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGA-IPDSYGSFSKLF---TSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEE-CCGGGGCCCTTC---CEEECCSSEEEEECCGGGGGCC
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCc-CCHHHhhhhhcC---cEEECcCCeeeccCChHHhCCc
Confidence 667777777777666 556666666777777777666 43 4 555 55554 44 55555553222
Q ss_pred ------------CcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCC
Q 036876 177 ------------KSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 177 ------------~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l 226 (234)
...|..++.+++|+.|++++|.....+|. +..+++|++|++++|.--
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSSCCE
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECcCCccc
Confidence 23344455566666666666433223333 566667777777666543
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.72 E-value=4.3e-17 Score=150.12 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=89.8
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCC-CCCCccC-CCCccEEEecCCccc-ccccccc
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLK-SLPSNLS-AEKLVLLEVPGSSIE-QLWDGVK 133 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~-~lp~~~~-l~~L~~L~l~~~~l~-~l~~~~~ 133 (234)
+..+++|++|++++|.+.+ .+|..+..+ +|++|++++|.+. .+|..+. +++|++|++++|++. .+|..++
T Consensus 462 ~~~l~~L~~L~L~~N~l~~------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTG------EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp GGGCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred HcCCCCceEEEecCCcccC------cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 3344444444444444433 345555555 6777777776654 4555555 677777777777666 5566666
Q ss_pred CCCCCcEEEcccCcccccCCCC-CCC------------------------------------------------------
Q 036876 134 HYSKLNQIIHVACKKLIAKTPN-PTL------------------------------------------------------ 158 (234)
Q Consensus 134 ~l~~L~~L~l~~~~~l~~~lp~-~~~------------------------------------------------------ 158 (234)
.+++|++|++++|..... +|. +..
T Consensus 536 ~l~~L~~L~Ls~N~l~g~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGT-IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GCTTCCEEECCSSEEESB-CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCCCCEEECCCCccCCc-CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 677777777766653223 442 111
Q ss_pred -------------CCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcC
Q 036876 159 -------------MPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLA 225 (234)
Q Consensus 159 -------------l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~ 225 (234)
+.++++|+.|++++|.....+|..+++++.|+.|++++|...+.+|.. ++.+++|+.|+++++.-
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~--l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE--VGDLRGLNILDLSSNKL 692 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCC
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH--HhCCCCCCEEECCCCcc
Confidence 111233366666665444456666666666666666665444566665 66666666666666543
No 12
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=5.5e-17 Score=131.70 Aligned_cols=132 Identities=17% Similarity=0.136 Sum_probs=70.4
Q ss_pred EEEEEeeCCCCCCCCCC-ccC-CCCccEEEecCCcccc--ccccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCc
Q 036876 92 EVKYLHWHGYPLKSLPS-NLS-AEKLVLLEVPGSSIEQ--LWDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKL 165 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~-~~~-l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l 165 (234)
+|++|++++|.+..++. .+. +++|++|++++|+++. +|..++.+++|++|++++|. ++. ++. +..+.+++.+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQS-IYCTDLRVLHQMPLL 178 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCE-ECGGGGHHHHTCTTC
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCc-CCHHHhhhhhhcccc
Confidence 44444444444444332 232 4455555555555443 34444555555555555554 333 321 3333333111
Q ss_pred c-EEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecC------CCcCCCh
Q 036876 166 V-ILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIG------HLLAVRW 228 (234)
Q Consensus 166 ~-~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~------~c~~l~~ 228 (234)
. .|++++ +.+..+|.......+|+.|++++ +.+..+|..+ +..+++|+.++++ +|+.++|
T Consensus 179 ~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~l~~N~~~c~c~~l~~ 245 (276)
T 2z62_A 179 NLSLDLSL-NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCPRIDY 245 (276)
T ss_dssp CEEEECCS-SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTT-TTTCCSCCEEECCSSCBCCCTTTTHH
T ss_pred ceeeecCC-CcccccCccccCCCcccEEECCC-CceeecCHhH-hcccccccEEEccCCcccccCCchHH
Confidence 2 455555 34444444333445788899988 4577888752 5789999999998 4665543
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.5e-16 Score=130.45 Aligned_cols=155 Identities=18% Similarity=0.109 Sum_probs=130.7
Q ss_pred CCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCCCCCcE
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHYSKLNQ 140 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 140 (234)
++++.|++++|.+.+ ..+..+..+ +|++|++++|.+..++....+++|++|++++|+++.+|..+..+++|++
T Consensus 31 ~~l~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 31 KDTTILHLSENLLYT------FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104 (290)
T ss_dssp TTCCEEECTTSCCSE------EEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCE
T ss_pred CCCCEEEcCCCcCCc------cCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCE
Confidence 689999999998773 345667888 9999999999998887764599999999999999999999999999999
Q ss_pred EEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcE
Q 036876 141 IIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRI 217 (234)
Q Consensus 141 L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~ 217 (234)
|++++|. ++. +|. |+.+++| +.|++++ +.+..+|. .+..+++|++|++++ +.++.+|..+ +..+++|+.
T Consensus 105 L~l~~N~-l~~-l~~~~~~~l~~L---~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~-~~~l~~L~~ 176 (290)
T 1p9a_G 105 LDVSFNR-LTS-LPLGALRGLGEL---QELYLKG-NELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGL-LNGLENLDT 176 (290)
T ss_dssp EECCSSC-CCC-CCSSTTTTCTTC---CEEECTT-SCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTT-TTTCTTCCE
T ss_pred EECCCCc-Ccc-cCHHHHcCCCCC---CEEECCC-CCCCccChhhcccccCCCEEECCC-CcCCccCHHH-hcCcCCCCE
Confidence 9999998 887 764 7777777 9999999 46777764 478899999999998 5788999862 577999999
Q ss_pred EecCCCcCCChhh
Q 036876 218 QHIGHLLAVRWKE 230 (234)
Q Consensus 218 l~l~~c~~l~~~~ 230 (234)
|+++++.--..|+
T Consensus 177 L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 177 LLLQENSLYTIPK 189 (290)
T ss_dssp EECCSSCCCCCCT
T ss_pred EECCCCcCCccCh
Confidence 9999886544443
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=1.7e-17 Score=137.33 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=87.3
Q ss_pred chhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCC-CCCCccC-CCCccEEEecCCccc-cccc
Q 036876 55 PNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLK-SLPSNLS-AEKLVLLEVPGSSIE-QLWD 130 (234)
Q Consensus 55 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~-~lp~~~~-l~~L~~L~l~~~~l~-~l~~ 130 (234)
+..|.++++|++|++++|.+.+ .+|..+..+ +|++|++++|.+. .+|..+. +++|++|++++|+++ .+|.
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 167 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNVSG------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECCEE------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred ChhHhcCCCCCEEECcCCeeCC------cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCH
Confidence 4445566666666666665543 334444444 4555555554433 3343333 444444444444444 3444
Q ss_pred cccCCC-C-----------------------CcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccC
Q 036876 131 GVKHYS-K-----------------------LNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFN 185 (234)
Q Consensus 131 ~~~~l~-~-----------------------L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~ 185 (234)
.++.+. + |++|++++|. ++...|. ++.+++| +.|++++| .+...+..+..
T Consensus 168 ~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~-l~~~~~~~~~~l~~L---~~L~L~~N-~l~~~~~~~~~ 242 (313)
T 1ogq_A 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM-LEGDASVLFGSDKNT---QKIHLAKN-SLAFDLGKVGL 242 (313)
T ss_dssp GGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE-EEECCGGGCCTTSCC---SEEECCSS-EECCBGGGCCC
T ss_pred HHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCc-ccCcCCHHHhcCCCC---CEEECCCC-ceeeecCcccc
Confidence 444443 4 4444554444 3321333 5555555 88888875 34433334777
Q ss_pred CCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 186 LECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 186 l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
+++|++|++++|...+.+|.. ++.+++|+.|++++|.
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSSE
T ss_pred cCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCCc
Confidence 788888888876544477776 7778888888887764
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.72 E-value=3.7e-17 Score=150.55 Aligned_cols=170 Identities=16% Similarity=0.167 Sum_probs=138.4
Q ss_pred ecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCC-CCCCccC-CCCccEEEe
Q 036876 44 DMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLK-SLPSNLS-AEKLVLLEV 120 (234)
Q Consensus 44 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~-~lp~~~~-l~~L~~L~l 120 (234)
++..+...+..+..+.++++|+.|++++|.+.+ .+|..+..+ +|++|++++|.+. .+|..+. +++|++|++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG------EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCC------cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 333333333456778899999999999998886 678888888 9999999999875 6787777 899999999
Q ss_pred cCCccc-ccccc--------------------------------------------------------------------
Q 036876 121 PGSSIE-QLWDG-------------------------------------------------------------------- 131 (234)
Q Consensus 121 ~~~~l~-~l~~~-------------------------------------------------------------------- 131 (234)
++|++. .+|..
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 999876 44432
Q ss_pred --ccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCccc
Q 036876 132 --VKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILS 208 (234)
Q Consensus 132 --~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 208 (234)
++.+.+|++|++++|..... +|. ++.+++| +.|++++|.....+|..++++++|+.|++++|...+.+|..
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L---~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-- 699 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYL---FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-- 699 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSC-CCGGGGGCTTC---CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG--
T ss_pred hhhhccccccEEECcCCccccc-CCHHHhccccC---CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH--
Confidence 33467889999999984446 887 8888888 99999997666689999999999999999997777789988
Q ss_pred CCCCCCCcEEecCCCcC
Q 036876 209 GIVNDALRIQHIGHLLA 225 (234)
Q Consensus 209 ~~~l~~L~~l~l~~c~~ 225 (234)
++.+++|+++++++|.-
T Consensus 700 l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 700 MSALTMLTEIDLSNNNL 716 (768)
T ss_dssp GGGCCCCSEEECCSSEE
T ss_pred HhCCCCCCEEECcCCcc
Confidence 89999999999998853
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.9e-16 Score=136.84 Aligned_cols=89 Identities=15% Similarity=0.207 Sum_probs=49.5
Q ss_pred eecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCcccc
Q 036876 51 ICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIEQ 127 (234)
Q Consensus 51 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~~ 127 (234)
..+.+..|.++++|+.|++++|.+.+ ..+..+..+ +|++|++++|.+..+|.. +. +++|++|++++|+++.
T Consensus 77 ~~~~~~~~~~l~~L~~L~Ls~n~i~~------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 77 QIIKVNSFKHLRHLEILQLSRNHIRT------IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp CEECTTTTSSCSSCCEEECCSSCCCE------ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred CeeCHHHhhCCCCCCEEECCCCcCCc------cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence 33445566777777777777776552 122445555 666666666666665542 33 5666666666666655
Q ss_pred ccc-cccCCCCCcEEEccc
Q 036876 128 LWD-GVKHYSKLNQIIHVA 145 (234)
Q Consensus 128 l~~-~~~~l~~L~~L~l~~ 145 (234)
++. .+..+++|++|++++
T Consensus 151 ~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 151 IPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp ECTTTTTTCTTCCEEECCC
T ss_pred cCHHHhhhCcccCEeCCCC
Confidence 443 233444444444444
No 17
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=3.4e-16 Score=135.25 Aligned_cols=168 Identities=21% Similarity=0.313 Sum_probs=91.3
Q ss_pred ecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccC-CCCcc-EEEEEeeCCCCCCCCCC-ccC-CCCccEEE
Q 036876 44 DMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQ-DLGFV-EVKYLHWHGYPLKSLPS-NLS-AEKLVLLE 119 (234)
Q Consensus 44 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~l-~L~~L~l~~~~~~~lp~-~~~-l~~L~~L~ 119 (234)
+++.+....+.+..|.++++|+.|++++|.+. .++. .+..+ +|++|++++|.+..+|. .+. +++|++|+
T Consensus 94 ~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 94 QLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp ECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ECCCCcCCccChhhccCCccCCEEECCCCcCC-------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 33443333455677888999999999998776 3443 46666 77788887777666554 233 55555555
Q ss_pred ecC-Cccccccc-cccCCCCCcEEEcccCcccccCCCCCCCCCCC---------------------CCccEEEecCCCCC
Q 036876 120 VPG-SSIEQLWD-GVKHYSKLNQIIHVACKKLIAKTPNPTLMPHL---------------------NKLVILILRGSKSL 176 (234)
Q Consensus 120 l~~-~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L---------------------~~l~~L~l~~~~~l 176 (234)
+++ +.+..++. .+.++++|++|++++|. ++. +|.+..+.+| ++|+.|++++| .+
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l 243 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCN-LRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QI 243 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSS-CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCc-Ccc-ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ce
Confidence 555 34444433 24455555555555554 444 4443333333 11155555442 33
Q ss_pred Ccc-cccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCC
Q 036876 177 KSL-PAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 177 ~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c 223 (234)
..+ +..+.++++|++|++++ +.+..+|..+ +..+++|+.++++++
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAH-NNLTLLPHDL-FTPLHHLERIHLHHN 289 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTT-SCCCCCCTTT-TSSCTTCCEEECCSS
T ss_pred eEEChhhhcCCCCCCEEECCC-CCCCccChhH-hccccCCCEEEcCCC
Confidence 332 23455555555555555 3444555432 345566666666543
No 18
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=2e-16 Score=130.70 Aligned_cols=149 Identities=16% Similarity=0.181 Sum_probs=85.9
Q ss_pred hhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCC
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHY 135 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l 135 (234)
.+..+++|+.|++++|.+. .++. +..+ +|++|++++|.+..++....+++|++|++++|+++.++. +..+
T Consensus 58 ~~~~l~~L~~L~L~~n~i~-------~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l 128 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQIT-------DLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGL 128 (308)
T ss_dssp TGGGCTTCCEEECCSSCCC-------CCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTC
T ss_pred hhhccCCCCEEEccCCcCC-------CChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hcCC
Confidence 4566677777777777655 3333 5555 666666666666665432226666666666666666543 5566
Q ss_pred CCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCC
Q 036876 136 SKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDAL 215 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L 215 (234)
++|++|++++|. ++. ++.++.+++| +.|++++| .+..++. +..+++|++|++++ +.+..+|. +..+++|
T Consensus 129 ~~L~~L~l~~n~-l~~-~~~l~~l~~L---~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~---l~~l~~L 197 (308)
T 1h6u_A 129 SNLQVLYLDLNQ-ITN-ISPLAGLTNL---QYLSIGNA-QVSDLTP-LANLSKLTTLKADD-NKISDISP---LASLPNL 197 (308)
T ss_dssp TTCCEEECCSSC-CCC-CGGGGGCTTC---CEEECCSS-CCCCCGG-GTTCTTCCEEECCS-SCCCCCGG---GGGCTTC
T ss_pred CCCCEEECCCCc-cCc-CccccCCCCc---cEEEccCC-cCCCChh-hcCCCCCCEEECCC-CccCcChh---hcCCCCC
Confidence 666666666665 555 5444444444 66666653 4444444 55556666666665 34555554 4555566
Q ss_pred cEEecCCCcC
Q 036876 216 RIQHIGHLLA 225 (234)
Q Consensus 216 ~~l~l~~c~~ 225 (234)
+.|++++|.-
T Consensus 198 ~~L~L~~N~l 207 (308)
T 1h6u_A 198 IEVHLKNNQI 207 (308)
T ss_dssp CEEECTTSCC
T ss_pred CEEEccCCcc
Confidence 6666655543
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=4.3e-17 Score=134.15 Aligned_cols=167 Identities=16% Similarity=0.154 Sum_probs=94.2
Q ss_pred ecCchhhCCCCCcceEEecCCCCCCCCc-------------------ccccccCCCCcc-EEEEEeeCCCCCCCCCC--c
Q 036876 52 CLNPNTFTKMPKLRFLKFYSSSFNGENK-------------------CKVSYLQDLGFV-EVKYLHWHGYPLKSLPS--N 109 (234)
Q Consensus 52 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~--~ 109 (234)
.++...|.++++|+.|++++|.+..... ....+|..+..+ +|++|++++|.+..++. .
T Consensus 42 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 121 (306)
T 2z66_A 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121 (306)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTT
T ss_pred ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchh
Confidence 3444446666677777776665542100 000233334444 56666666666555543 3
Q ss_pred cC-CCCccEEEecCCccccc-cccccCCCCCcEEEcccCcccc-cCCCC-CCCCCCCCCccEEEecCCCCCCcc-ccccc
Q 036876 110 LS-AEKLVLLEVPGSSIEQL-WDGVKHYSKLNQIIHVACKKLI-AKTPN-PTLMPHLNKLVILILRGSKSLKSL-PAEIF 184 (234)
Q Consensus 110 ~~-l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~-~~lp~-~~~l~~L~~l~~L~l~~~~~l~~l-p~~~~ 184 (234)
+. +++|++|++++|++... +..+..+++|++|++++|.... . +|. ++.+++| +.|++++| .+..+ |..+.
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L---~~L~Ls~n-~l~~~~~~~~~ 196 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNL---TFLDLSQC-QLEQLSPTAFN 196 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTC---CEEECTTS-CCCEECTTTTT
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc-chhHHhhCcCC---CEEECCCC-CcCCcCHHHhc
Confidence 33 56666666666666643 3335666667777776665222 2 444 5555555 77777774 44444 45666
Q ss_pred CCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcC
Q 036876 185 NLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLA 225 (234)
Q Consensus 185 ~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~ 225 (234)
.+++|++|++++| .+..+|... +..+++|+.|++++|.-
T Consensus 197 ~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 197 SLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp TCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSCC
T ss_pred CCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCCC
Confidence 7777777777773 455555421 56677777777777643
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=1e-15 Score=123.94 Aligned_cols=153 Identities=22% Similarity=0.240 Sum_probs=126.8
Q ss_pred CCcceEEecCCCCCCCCccccccc-CCCCcc-EEEEEeeCCCCCCCCCCcc-C-CCCccEEEecCCcccccccc-ccCCC
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYL-QDLGFV-EVKYLHWHGYPLKSLPSNL-S-AEKLVLLEVPGSSIEQLWDG-VKHYS 136 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l-~L~~L~l~~~~~~~lp~~~-~-l~~L~~L~l~~~~l~~l~~~-~~~l~ 136 (234)
++++.|++++|.+. .++ ..+..+ +|++|++++|.+..+|... . +++|++|++++|+++.+|.. +..++
T Consensus 37 ~~l~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNKLS-------SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109 (270)
T ss_dssp TTCSEEECCSSCCS-------CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred CCCCEEECcCCCCC-------eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence 57999999999877 444 467888 9999999999999888764 5 89999999999999988765 68899
Q ss_pred CCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccCCCCCCcCCCcccCCCCC
Q 036876 137 KLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDCSKLKRLPEILSGIVND 213 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~ 213 (234)
+|++|++++|. ++. ++. |+.+++| +.|++++| .+..+|. .++.+++|++|++++ +.+..+|... +..++
T Consensus 110 ~L~~L~l~~n~-l~~-~~~~~~~~l~~L---~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~-~~~l~ 181 (270)
T 2o6q_A 110 NLAELRLDRNQ-LKS-LPPRVFDSLTKL---TYLSLGYN-ELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGA-FDKLT 181 (270)
T ss_dssp SCCEEECCSSC-CCC-CCTTTTTTCTTC---CEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTT-TTTCT
T ss_pred CCCEEECCCCc-cCe-eCHHHhCcCcCC---CEEECCCC-cCCccCHhHccCCcccceeEecC-CcCcEeChhH-hccCC
Confidence 99999999998 777 665 6777777 99999994 6777775 478999999999998 4677777642 67899
Q ss_pred CCcEEecCCCcCCChh
Q 036876 214 ALRIQHIGHLLAVRWK 229 (234)
Q Consensus 214 ~L~~l~l~~c~~l~~~ 229 (234)
+|++|++++|.--..|
T Consensus 182 ~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 182 ELKTLKLDNNQLKRVP 197 (270)
T ss_dssp TCCEEECCSSCCSCCC
T ss_pred CcCEEECCCCcCCcCC
Confidence 9999999998543443
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=3.4e-16 Score=135.69 Aligned_cols=165 Identities=17% Similarity=0.220 Sum_probs=118.6
Q ss_pred ecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccC-CCCcc-EEEEEeeCCCCCCCCCC-------------
Q 036876 44 DMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQ-DLGFV-EVKYLHWHGYPLKSLPS------------- 108 (234)
Q Consensus 44 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~l-~L~~L~l~~~~~~~lp~------------- 108 (234)
+++.+....+.+..|.++++|+.|++++|.+. .++. .+..+ +|++|++++|.+..+|.
T Consensus 105 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ECCCCccCCcChhhccCcccCCEEECCCCcCC-------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 33333333445566777778888888877666 3332 24445 56666666555443332
Q ss_pred -------------ccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCC-CC-CCCCCCCCCccEEEecC
Q 036876 109 -------------NLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKT-PN-PTLMPHLNKLVILILRG 172 (234)
Q Consensus 109 -------------~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~l-p~-~~~l~~L~~l~~L~l~~ 172 (234)
.+. +.+|++|++++|+++.+| .+..+++|++|++++|. ++. + |. |..+++| +.|++++
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L---~~L~L~~ 251 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-FPE-IRPGSFHGLSSL---KKLWVMN 251 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSC-CSE-ECGGGGTTCTTC---CEEECTT
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCc-Ccc-cCcccccCccCC---CEEEeCC
Confidence 234 677888888888888775 57788999999999998 666 5 55 7777777 9999999
Q ss_pred CCCCCcc-cccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 173 SKSLKSL-PAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 173 ~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
| .+..+ |..+.++++|++|++++ +.+..+|... +..+++|+.+++++++
T Consensus 252 n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 252 S-QVSLIERNAFDGLASLVELNLAH-NNLSSLPHDL-FTPLRYLVELHLHHNP 301 (452)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred C-cCceECHHHhcCCCCCCEEECCC-CcCCccChHH-hccccCCCEEEccCCC
Confidence 5 55554 56789999999999999 4778888753 6789999999998764
No 22
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=5.9e-17 Score=128.88 Aligned_cols=171 Identities=11% Similarity=0.062 Sum_probs=105.2
Q ss_pred eeeEEEecCCceeeecCchhhCCCCCcceEEecCCC-CCCCCcccccccC-CCCcc-EEEEEeeCC-CCCCCCCC-ccC-
Q 036876 38 IEGICLDMSKVKEICLNPNTFTKMPKLRFLKFYSSS-FNGENKCKVSYLQ-DLGFV-EVKYLHWHG-YPLKSLPS-NLS- 111 (234)
Q Consensus 38 i~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~-~l~~l-~L~~L~l~~-~~~~~lp~-~~~- 111 (234)
++.+.+....+ ..+.+..|.++++|+.|++++|. +. .++. .+..+ +|++|++++ +.+..+|+ .+.
T Consensus 33 l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~-------~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 33 TQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQ-------QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp CCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCC-------EECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred ccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcc-------eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 44444433333 33445567777888888888775 54 3443 45556 777777776 66666664 343
Q ss_pred CCCccEEEecCCccccccccccCCCCCc---EEEcccCcccccCCCC--CCCCCCCCCcc-EEEecCCCCCCcccccccC
Q 036876 112 AEKLVLLEVPGSSIEQLWDGVKHYSKLN---QIIHVACKKLIAKTPN--PTLMPHLNKLV-ILILRGSKSLKSLPAEIFN 185 (234)
Q Consensus 112 l~~L~~L~l~~~~l~~l~~~~~~l~~L~---~L~l~~~~~l~~~lp~--~~~l~~L~~l~-~L~l~~~~~l~~lp~~~~~ 185 (234)
+++|++|++++|+++.+|. +..+.+|+ +|++++|..++. +|. |..+++| + .|++++ +.+..+|.....
T Consensus 104 l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L---~~~L~l~~-n~l~~i~~~~~~ 177 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNE---TLTLKLYN-NGFTSVQGYAFN 177 (239)
T ss_dssp CTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSS---EEEEECCS-CCCCEECTTTTT
T ss_pred CCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhh-cCcccccchhcc---eeEEEcCC-CCCcccCHhhcC
Confidence 6777777777777777665 66666666 777777722666 554 5555555 7 777776 355566654333
Q ss_pred CCCCCEEeccCCCCCCcCCCcccCCCC-CCCcEEecCCCc
Q 036876 186 LECLTELDLSDCSKLKRLPEILSGIVN-DALRIQHIGHLL 224 (234)
Q Consensus 186 l~~L~~L~l~~c~~l~~lp~~~~~~~l-~~L~~l~l~~c~ 224 (234)
.++|+++++++|..++.+|... +..+ ++|+.++++++.
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTCC
T ss_pred CCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCCc
Confidence 3667777777754466665532 5566 677777777654
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=7.7e-17 Score=124.65 Aligned_cols=148 Identities=10% Similarity=0.067 Sum_probs=123.4
Q ss_pred CCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCcccc-ccccccCC
Q 036876 59 TKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQ-LWDGVKHY 135 (234)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~-l~~~~~~l 135 (234)
..+++|+.|++++|.+. .+| .+..+ +|++|++++|.+..++ .+. +++|++|++++|+++. .+..++.+
T Consensus 41 ~~l~~L~~L~l~~n~i~-------~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-------DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSCCS-------CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred hhcCCccEEeccCCCcc-------ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 45778999999999776 556 57777 9999999999877665 454 9999999999999985 67889999
Q ss_pred CCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCC
Q 036876 136 SKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDA 214 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~ 214 (234)
++|++|++++|. ++...|. ++.+++| +.|++++|..++.+| .+..+++|++|++++ +.+..++. +..+++
T Consensus 112 ~~L~~L~Ls~n~-i~~~~~~~l~~l~~L---~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~---l~~l~~ 182 (197)
T 4ezg_A 112 TSLTLLDISHSA-HDDSILTKINTLPKV---NSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG---IEDFPK 182 (197)
T ss_dssp TTCCEEECCSSB-CBGGGHHHHTTCSSC---CEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT---GGGCSS
T ss_pred CCCCEEEecCCc-cCcHhHHHHhhCCCC---CEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH---hccCCC
Confidence 999999999998 5431455 7777777 999999976588887 588999999999998 46788886 899999
Q ss_pred CcEEecCCCc
Q 036876 215 LRIQHIGHLL 224 (234)
Q Consensus 215 L~~l~l~~c~ 224 (234)
|+.|+++++.
T Consensus 183 L~~L~l~~N~ 192 (197)
T 4ezg_A 183 LNQLYAFSQT 192 (197)
T ss_dssp CCEEEECBC-
T ss_pred CCEEEeeCcc
Confidence 9999998875
No 24
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=1.4e-16 Score=130.65 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=126.7
Q ss_pred hhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccC
Q 036876 56 NTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKH 134 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~ 134 (234)
+.+..+++|+.|++++|.+. .++. +..+ +|++|++++|.+..+|....+++|++|++++|+++.+ ..+..
T Consensus 62 ~~~~~l~~L~~L~L~~n~l~-------~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~-~~l~~ 132 (291)
T 1h6t_A 62 QGIQYLPNVTKLFLNGNKLT-------DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLVH 132 (291)
T ss_dssp TTGGGCTTCCEEECCSSCCC-------CCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC-GGGGG
T ss_pred hhHhcCCCCCEEEccCCccC-------CCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC-hhhcC
Confidence 34788999999999999877 3444 6777 9999999999998877633499999999999999987 46888
Q ss_pred CCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCC
Q 036876 135 YSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDA 214 (234)
Q Consensus 135 l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~ 214 (234)
+++|++|++++|. ++. ++.++.+++| +.|++++| .+..++. +..+++|++|++++ +.+..+|. +..+++
T Consensus 133 l~~L~~L~l~~n~-l~~-~~~l~~l~~L---~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~-N~i~~l~~---l~~l~~ 201 (291)
T 1h6t_A 133 LPQLESLYLGNNK-ITD-ITVLSRLTKL---DTLSLEDN-QISDIVP-LAGLTKLQNLYLSK-NHISDLRA---LAGLKN 201 (291)
T ss_dssp CTTCCEEECCSSC-CCC-CGGGGGCTTC---SEEECCSS-CCCCCGG-GTTCTTCCEEECCS-SCCCBCGG---GTTCTT
T ss_pred CCCCCEEEccCCc-CCc-chhhccCCCC---CEEEccCC-ccccchh-hcCCCccCEEECCC-CcCCCChh---hccCCC
Confidence 9999999999998 888 7657777777 99999995 6777766 88999999999998 57888887 899999
Q ss_pred CcEEecCCCc
Q 036876 215 LRIQHIGHLL 224 (234)
Q Consensus 215 L~~l~l~~c~ 224 (234)
|+.|+++++.
T Consensus 202 L~~L~l~~n~ 211 (291)
T 1h6t_A 202 LDVLELFSQE 211 (291)
T ss_dssp CSEEEEEEEE
T ss_pred CCEEECcCCc
Confidence 9999998874
No 25
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=2.3e-16 Score=130.37 Aligned_cols=146 Identities=12% Similarity=0.163 Sum_probs=126.0
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCC
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHY 135 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l 135 (234)
+..+++|+.|++++|.+.+ ++ .+..+ +|++|++++|.+..++. +. +++|++|++++|+++.++. ++.+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-------~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l 150 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-------VS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGL 150 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-------CG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGC
T ss_pred HccCCCCCEEEccCCcCCC-------ch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCC
Confidence 8899999999999998763 33 46677 99999999999988876 55 9999999999999998866 8889
Q ss_pred CCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCC
Q 036876 136 SKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDAL 215 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L 215 (234)
++|++|++++|. ++. ++.++.+++| +.|++++ +.+..++. +..+++|++|++++ +.+..+|+ +..+++|
T Consensus 151 ~~L~~L~l~~n~-l~~-~~~l~~l~~L---~~L~l~~-n~l~~~~~-l~~l~~L~~L~L~~-N~l~~~~~---l~~l~~L 219 (308)
T 1h6u_A 151 TNLQYLSIGNAQ-VSD-LTPLANLSKL---TTLKADD-NKISDISP-LASLPNLIEVHLKN-NQISDVSP---LANTSNL 219 (308)
T ss_dssp TTCCEEECCSSC-CCC-CGGGTTCTTC---CEEECCS-SCCCCCGG-GGGCTTCCEEECTT-SCCCBCGG---GTTCTTC
T ss_pred CCccEEEccCCc-CCC-ChhhcCCCCC---CEEECCC-CccCcChh-hcCCCCCCEEEccC-CccCcccc---ccCCCCC
Confidence 999999999997 887 7766666667 9999999 56777775 88899999999999 57888886 8999999
Q ss_pred cEEecCCCc
Q 036876 216 RIQHIGHLL 224 (234)
Q Consensus 216 ~~l~l~~c~ 224 (234)
+.++++++.
T Consensus 220 ~~L~l~~N~ 228 (308)
T 1h6u_A 220 FIVTLTNQT 228 (308)
T ss_dssp CEEEEEEEE
T ss_pred CEEEccCCe
Confidence 999998765
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.69 E-value=1.1e-15 Score=129.92 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=98.7
Q ss_pred ecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCcc-C-CCCccEEEecCCccccc
Q 036876 52 CLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNL-S-AEKLVLLEVPGSSIEQL 128 (234)
Q Consensus 52 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~-~-l~~L~~L~l~~~~l~~l 128 (234)
.+.+..|..+++|++|++++|.+.+ ..|..+..+ +|++|++++|.+..+|... . +++|++|++++|++..+
T Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 83 EIDTYAFAYAHTIQKLYMGFNAIRY------LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred ccChhhccCCCCcCEEECCCCCCCc------CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc
Confidence 3344456666677777777666552 223445566 6777777777776666553 4 67777777777777665
Q ss_pred cc-cccCCCCCcEEEcccCcccccCCCC--CCC-----------------------------------------------
Q 036876 129 WD-GVKHYSKLNQIIHVACKKLIAKTPN--PTL----------------------------------------------- 158 (234)
Q Consensus 129 ~~-~~~~l~~L~~L~l~~~~~l~~~lp~--~~~----------------------------------------------- 158 (234)
+. .++.+++|++|++++|. ++. ++. +..
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 234 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNR-LTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 234 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSC-CSB-CCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECC
T ss_pred ChhhccCCCCCCEEECCCCc-CCc-cccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECC
Confidence 43 36666677777776665 333 221 111
Q ss_pred ---------CCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCCChh
Q 036876 159 ---------MPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAVRWK 229 (234)
Q Consensus 159 ---------l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l~~~ 229 (234)
+.++++|+.|++++|......|..+..+++|++|++++ +.+..+|.. ++.+++|+.|++++|.--..|
T Consensus 235 ~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~--~~~l~~L~~L~L~~n~l~~~~ 311 (390)
T 3o6n_A 235 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLY--GQPIPTLKVLDLSHNHLLHVE 311 (390)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEEECS--SSCCTTCCEEECCSSCCCCCG
T ss_pred CCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCcccCcc--cCCCCCCCEEECCCCcceecC
Confidence 11123336666666422222355667777777777777 456667765 667777777777777543444
No 27
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=138.95 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=84.4
Q ss_pred cCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCcccccc
Q 036876 53 LNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIEQLW 129 (234)
Q Consensus 53 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~~l~ 129 (234)
+.+..|.++++|+.|++++|.+.+ ..+..+..+ +|++|++++|.+..+|.. +. +++|++|++++|+++.+|
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 140 (353)
T 2z80_A 67 ISNSDLQRCVNLQALVLTSNGINT------IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG 140 (353)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSC
T ss_pred cCHHHhccCCCCCEEECCCCccCc------cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccC
Confidence 334455566666666666665542 223345555 666666666666555544 33 566666666666666555
Q ss_pred c--cccCCCCCcEEEcccCcccccCCC-C-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCC
Q 036876 130 D--GVKHYSKLNQIIHVACKKLIAKTP-N-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPE 205 (234)
Q Consensus 130 ~--~~~~l~~L~~L~l~~~~~l~~~lp-~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 205 (234)
. .+..+++|++|++++|..++. ++ . ++.+++| +.|++++|......|..++.+++|++|++++| .+..+|.
T Consensus 141 ~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L---~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~ 215 (353)
T 2z80_A 141 ETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFL---EELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLE 215 (353)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEE---EEEEEEETTCCEECTTTTTTCSEEEEEEEECS-CSTTHHH
T ss_pred chhhhccCCCCcEEECCCCccccc-cCHHHccCCCCC---CEEECCCCCcCccCHHHHhccccCCeecCCCC-ccccchh
Confidence 4 355566666666666543444 43 2 4444444 66666654322223455555666666666653 3444444
Q ss_pred cccCCCCCCCcEEecCCCc
Q 036876 206 ILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 206 ~~~~~~l~~L~~l~l~~c~ 224 (234)
.. +..+++|+.|++++|.
T Consensus 216 ~~-~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 216 IF-VDVTSSVECLELRDTD 233 (353)
T ss_dssp HH-HHHTTTEEEEEEESCB
T ss_pred hh-hhhcccccEEECCCCc
Confidence 21 2235556666665543
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=7.1e-16 Score=138.24 Aligned_cols=168 Identities=16% Similarity=0.141 Sum_probs=96.5
Q ss_pred ecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCcc-C-CCCccEEEecCCccccc
Q 036876 52 CLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNL-S-AEKLVLLEVPGSSIEQL 128 (234)
Q Consensus 52 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~-~-l~~L~~L~l~~~~l~~l 128 (234)
.+.+..|..+++|+.|++++|.+.+ ..|..+..+ +|++|++++|.+..+|+.+ . +++|++|++++|.+..+
T Consensus 89 ~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 89 EIDTYAFAYAHTIQKLYMGFNAIRY------LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCChHHhcCCCCCCEEECCCCcCCC------CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 3344456666666666666665553 223344555 6677777766666666543 3 66677777777666655
Q ss_pred cc-cccCCCCCcEEEcccCcccccCCCC--CCC-----------------------------------------------
Q 036876 129 WD-GVKHYSKLNQIIHVACKKLIAKTPN--PTL----------------------------------------------- 158 (234)
Q Consensus 129 ~~-~~~~l~~L~~L~l~~~~~l~~~lp~--~~~----------------------------------------------- 158 (234)
+. .++.+++|++|++++|. ++. ++. +..
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~ 240 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNR-LTH-VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSC-CSB-CCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECC
T ss_pred ChhhhhcCCcCcEEECcCCC-CCC-cChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECC
Confidence 43 36666666666666665 333 221 100
Q ss_pred ---------CCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCCChh
Q 036876 159 ---------MPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAVRWK 229 (234)
Q Consensus 159 ---------l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l~~~ 229 (234)
+.++++|+.|++++|......|..++.+++|+.|++++ +.+..+|.. ++.+++|+.|++++|.--..|
T Consensus 241 ~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~--~~~l~~L~~L~Ls~N~l~~i~ 317 (597)
T 3oja_B 241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLY--GQPIPTLKVLDLSHNHLLHVE 317 (597)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT-SCCCEEECS--SSCCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC-CCCCCCCcc--cccCCCCcEEECCCCCCCccC
Confidence 11123336666666433333355666777777777776 456666665 566777777777777554444
Q ss_pred h
Q 036876 230 E 230 (234)
Q Consensus 230 ~ 230 (234)
+
T Consensus 318 ~ 318 (597)
T 3oja_B 318 R 318 (597)
T ss_dssp G
T ss_pred c
Confidence 3
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=5.7e-16 Score=134.96 Aligned_cols=170 Identities=19% Similarity=0.205 Sum_probs=121.8
Q ss_pred EecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEE
Q 036876 43 LDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLE 119 (234)
Q Consensus 43 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~ 119 (234)
+++.......+.+..|.++++|++|++++|.+.+ ..|..+..+ +|++|++++|.+..+|.. +. +++|++|+
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSA------VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccCE------eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 3455544445566788999999999999997763 346778888 999999999998888865 45 89999999
Q ss_pred ecCCccccc-cccccCCCCCcEEEcccCcccccCC-CC-CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEecc
Q 036876 120 VPGSSIEQL-WDGVKHYSKLNQIIHVACKKLIAKT-PN-PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLS 195 (234)
Q Consensus 120 l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~l-p~-~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~ 195 (234)
+++|++..+ +..+..+++|++|++++|. +.. + +. |+.+++| +.|++++| .+..+| ..+.++++|+.|+++
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L---~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDND-LVY-ISHRAFSGLNSL---EQLTLEKC-NLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTT-CCE-ECTTSSTTCTTC---CEEEEESC-CCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCCccccCChhHccccccCCEEECCCCc-cce-eChhhccCCCCC---CEEECCCC-cCcccChhHhcccCCCcEEeCC
Confidence 999988866 4567888899999999887 555 4 33 6666666 88888884 555555 346677777777777
Q ss_pred CCCCCCcCCCcccCCCCCCCcEEecCCCcCC
Q 036876 196 DCSKLKRLPEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 196 ~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l 226 (234)
+| .+..++... +..+++|+.|++++|..+
T Consensus 185 ~n-~i~~~~~~~-~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 185 HL-NINAIRDYS-FKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp SC-CCCEECTTC-SCSCTTCCEEEEECCTTC
T ss_pred CC-cCcEeChhh-cccCcccceeeCCCCccc
Confidence 64 344444321 566666666666665443
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=7.1e-16 Score=128.41 Aligned_cols=166 Identities=19% Similarity=0.175 Sum_probs=98.5
Q ss_pred ecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecC
Q 036876 44 DMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPG 122 (234)
Q Consensus 44 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~ 122 (234)
++.......+.+..|.++++|++|++++|.+.+ ..|..+..+ +|++|++++|.+..+|..+. ++|++|++++
T Consensus 60 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~ 132 (332)
T 2ft3_A 60 DLQNNDISELRKDDFKGLQHLYALVLVNNKISK------IHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHD 132 (332)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE------ECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCS
T ss_pred ECCCCcCCccCHhHhhCCCCCcEEECCCCccCc------cCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCC
Confidence 444443334555678888888888888887763 335667777 77888887777777665443 5666666666
Q ss_pred Ccccccccc-ccCCCCCcEEEcccCcc---------------------------------------------cccCCC-C
Q 036876 123 SSIEQLWDG-VKHYSKLNQIIHVACKK---------------------------------------------LIAKTP-N 155 (234)
Q Consensus 123 ~~l~~l~~~-~~~l~~L~~L~l~~~~~---------------------------------------------l~~~lp-~ 155 (234)
|++..+|.. +..+++|++|++++|.. ++. ++ .
T Consensus 133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~-~~~~ 211 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQA-IELE 211 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCC-CCTT
T ss_pred CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCc-cCHH
Confidence 666655543 55556666666655541 111 11 1
Q ss_pred -CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 156 -PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 156 -~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
++.++ +|+.|++++| .+..++ ..++.+++|++|++++ +.+..+|.. ++.+++|+.++++++.
T Consensus 212 ~l~~l~---~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~--l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 212 DLLRYS---KLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDN-NKLSRVPAG--LPDLKLLQVVYLHTNN 275 (332)
T ss_dssp SSTTCT---TCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCS-SCCCBCCTT--GGGCTTCCEEECCSSC
T ss_pred HhcCCC---CCCEEECCCC-cCCcCChhHhhCCCCCCEEECCC-CcCeecChh--hhcCccCCEEECCCCC
Confidence 22222 3366666653 333333 3456666666666666 355566665 6666666666666553
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=2.9e-16 Score=129.21 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=121.9
Q ss_pred hhCCCCCcceEEecCCCCCCCCccccccc--CCCCcc-EEEEEeeCCCCCCCCC-CccC-CCCccEEEecCCcccc--cc
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCKVSYL--QDLGFV-EVKYLHWHGYPLKSLP-SNLS-AEKLVLLEVPGSSIEQ--LW 129 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~l~~l-~L~~L~l~~~~~~~lp-~~~~-l~~L~~L~l~~~~l~~--l~ 129 (234)
.+..+++|+.|++++|.+. .++ ..+..+ +|++|++++|.+...+ ..+. +++|++|++++|++.. +|
T Consensus 96 ~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEETCTTCCEEECTTSEEE-------SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred hcCCCCCCCEEECCCCccc-------ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 4667778888888877655 333 356777 9999999999876554 4455 8999999999999985 78
Q ss_pred ccccCCCCCcEEEcccCcccccCC-CC-CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccCCCCCCcCCCc
Q 036876 130 DGVKHYSKLNQIIHVACKKLIAKT-PN-PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKLKRLPEI 206 (234)
Q Consensus 130 ~~~~~l~~L~~L~l~~~~~l~~~l-p~-~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~ 206 (234)
..+..+++|++|++++|. ++. + |. ++.+++| +.|++++| .+..++ ..+..+++|++|++++|......|..
T Consensus 169 ~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L---~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQ-LEQ-LSPTAFNSLSSL---QVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp SCCTTCTTCCEEECTTSC-CCE-ECTTTTTTCTTC---CEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred hHHhhCcCCCEEECCCCC-cCC-cCHHHhcCCCCC---CEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 889999999999999998 766 5 55 7777777 99999995 566665 46889999999999997555555665
Q ss_pred ccCCCC-CCCcEEecCCCcC
Q 036876 207 LSGIVN-DALRIQHIGHLLA 225 (234)
Q Consensus 207 ~~~~~l-~~L~~l~l~~c~~ 225 (234)
+..+ ++|+.+++++++-
T Consensus 243 --~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 243 --LQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp --CCCCCTTCCEEECTTCCE
T ss_pred --HHhhhccCCEEEccCCCe
Confidence 7777 4999999998653
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=3.3e-16 Score=124.53 Aligned_cols=172 Identities=14% Similarity=0.148 Sum_probs=135.4
Q ss_pred ccceeeEEEecCC-ceeeecCchhhCCCCCcceEEecC-CCCCCCCccccccc-CCCCcc-EEEEEeeCCCCCCCCCCcc
Q 036876 35 TKKIEGICLDMSK-VKEICLNPNTFTKMPKLRFLKFYS-SSFNGENKCKVSYL-QDLGFV-EVKYLHWHGYPLKSLPSNL 110 (234)
Q Consensus 35 ~~~i~~~~l~~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~-~~l~~l-~L~~L~l~~~~~~~lp~~~ 110 (234)
...++.+.+..+. + ..+.+..|.++++|+.|++++ |.+. .++ ..+..+ +|++|++++|.+..+|. +
T Consensus 54 l~~L~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~l~~~n~l~-------~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~ 123 (239)
T 2xwt_C 54 LPNISRIYVSIDVTL--QQLESHSFYNLSKVTHIEIRNTRNLT-------YIDPDALKELPLLKFLGIFNTGLKMFPD-L 123 (239)
T ss_dssp CTTCCEEEEECCSSC--CEECTTTEESCTTCCEEEEEEETTCC-------EECTTSEECCTTCCEEEEEEECCCSCCC-C
T ss_pred CCCCcEEeCCCCCCc--ceeCHhHcCCCcCCcEEECCCCCCee-------EcCHHHhCCCCCCCEEeCCCCCCccccc-c
Confidence 3456666554443 3 345566789999999999998 8776 454 456777 99999999999998987 5
Q ss_pred C-CCCcc---EEEecCC-cccccccc-ccCCCCCc-EEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCccc-c
Q 036876 111 S-AEKLV---LLEVPGS-SIEQLWDG-VKHYSKLN-QIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLP-A 181 (234)
Q Consensus 111 ~-l~~L~---~L~l~~~-~l~~l~~~-~~~l~~L~-~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp-~ 181 (234)
. +.+|+ +|++++| +++.+|.. +..+++|+ ++++++|. ++. +|. .....+| +.|++++|..++.+| .
T Consensus 124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~-i~~~~~~~~~L---~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTS-VQGYAFNGTKL---DAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCE-ECTTTTTTCEE---EEEECTTCTTCCEECTT
T ss_pred ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-Ccc-cCHhhcCCCCC---CEEEcCCCCCcccCCHH
Confidence 4 77777 9999999 99988765 88899999 99999998 778 886 2222556 999999965688886 4
Q ss_pred cccCC-CCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCC
Q 036876 182 EIFNL-ECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 182 ~~~~l-~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l 226 (234)
.+.++ ++|+.+++++ +.+..+|. ..+++|+.|+++++..|
T Consensus 199 ~~~~l~~~L~~L~l~~-N~l~~l~~----~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQ-TSVTALPS----KGLEHLKELIARNTWTL 239 (239)
T ss_dssp TTTTCSBCCSEEECTT-CCCCCCCC----TTCTTCSEEECTTC---
T ss_pred HhhccccCCcEEECCC-CccccCCh----hHhccCceeeccCccCC
Confidence 58888 9999999998 67888988 36889999999988653
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=1.7e-15 Score=125.91 Aligned_cols=166 Identities=19% Similarity=0.213 Sum_probs=89.2
Q ss_pred EecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEec
Q 036876 43 LDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVP 121 (234)
Q Consensus 43 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~ 121 (234)
++++......+.+..|.++++|++|++++|.+.+ ..|..+..+ +|++|++++|.+..+|..+. ++|++|+++
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~ 129 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISK------ISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVH 129 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC------BCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECC
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcCCe------eCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECC
Confidence 3444443334455567788888888888887663 335666666 77777777777666654322 344444444
Q ss_pred CCcccccc---------------------------ccccCCCCCcEEEcccCcccccCCCC-------------------
Q 036876 122 GSSIEQLW---------------------------DGVKHYSKLNQIIHVACKKLIAKTPN------------------- 155 (234)
Q Consensus 122 ~~~l~~l~---------------------------~~~~~l~~L~~L~l~~~~~l~~~lp~------------------- 155 (234)
+|+++.++ ..+..+++|++|++++|. ++. +|.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-l~~~~~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITT-IPQGLPPSLTELHLDGNKITKV 207 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCS-CCSSCCTTCSEEECTTSCCCEE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-ccc-CCccccccCCEEECCCCcCCcc
Confidence 44443332 223334444444444433 332 222
Q ss_pred ----CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 156 ----PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 156 ----~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
++.+++| +.|++++| .+..++ ..+..+++|++|++++| .+..+|.. +..+++|+++++++|.
T Consensus 208 ~~~~~~~l~~L---~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 208 DAASLKGLNNL---AKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPGG--LADHKYIQVVYLHNNN 274 (330)
T ss_dssp CTGGGTTCTTC---CEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCTT--TTTCSSCCEEECCSSC
T ss_pred CHHHhcCCCCC---CEEECCCC-cCceeChhhccCCCCCCEEECCCC-cCccCChh--hccCCCcCEEECCCCc
Confidence 3333333 55665553 333333 24555666666666653 45566665 6666666666666553
No 34
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=2.7e-16 Score=130.33 Aligned_cols=126 Identities=12% Similarity=0.062 Sum_probs=101.4
Q ss_pred EEEEEeeCCCCCCCCCC-ccC-CCCccEEEecCCcccccc-ccc-cCCCCCcEEEcccCcccccCCCCCCCCCCCCCccE
Q 036876 92 EVKYLHWHGYPLKSLPS-NLS-AEKLVLLEVPGSSIEQLW-DGV-KHYSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVI 167 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~-~~~-l~~L~~L~l~~~~l~~l~-~~~-~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~ 167 (234)
+|++|++++|.+..+++ .+. +++|++|++++|++..++ ..+ ..+++|++|++++|. ++. ++....+++| +.
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~l~~L---~~ 195 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD-VKGQVVFAKL---KT 195 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE-EECCCCCTTC---CE
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccc-cccccccccC---CE
Confidence 46777777777776654 444 788999999999888764 334 468899999999998 777 7664445666 99
Q ss_pred EEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCC
Q 036876 168 LILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 168 L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l 226 (234)
|++++ +.+..+|..+..+++|++|++++ +.+..+|.. +..+++|+.+++++++-.
T Consensus 196 L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~--~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 196 LDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKA--LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTT--CCCCTTCCEEECTTCCCB
T ss_pred EECCC-CcCCcchhhhcccCcccEEECcC-CcccchhhH--hhcCCCCCEEEccCCCcc
Confidence 99998 57888888899999999999999 578899998 899999999999998765
No 35
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=3.4e-16 Score=126.56 Aligned_cols=145 Identities=19% Similarity=0.159 Sum_probs=108.5
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCC
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHY 135 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l 135 (234)
+..+++|+.|++++|.+. .++ .+..+ +|++|++++|.+..+++ +. +++|++|++++|+++.+|....
T Consensus 37 ~~~l~~L~~L~l~~n~i~-------~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-- 105 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-------SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-- 105 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-------CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--
T ss_pred hhhcCcCcEEECcCCCcc-------cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--
Confidence 556778888888888665 444 56666 88888888888887776 55 8888888888888887765433
Q ss_pred CCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCC
Q 036876 136 SKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDAL 215 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L 215 (234)
.+|++|++++|. ++. ++.++.+++| +.|++++ +.++.+| .++.+++|++|++++ +.+..++. +..+++|
T Consensus 106 ~~L~~L~L~~N~-l~~-~~~l~~l~~L---~~L~Ls~-N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~~---l~~l~~L 174 (263)
T 1xeu_A 106 ACLSRLFLDNNE-LRD-TDSLIHLKNL---EILSIRN-NKLKSIV-MLGFLSKLEVLDLHG-NEITNTGG---LTRLKKV 174 (263)
T ss_dssp SSCCEEECCSSC-CSB-SGGGTTCTTC---CEEECTT-SCCCBCG-GGGGCTTCCEEECTT-SCCCBCTT---STTCCCC
T ss_pred CcccEEEccCCc-cCC-ChhhcCcccc---cEEECCC-CcCCCCh-HHccCCCCCEEECCC-CcCcchHH---hccCCCC
Confidence 788888888886 777 7666666666 8888887 4666666 577788888888887 45666654 7888888
Q ss_pred cEEecCCCc
Q 036876 216 RIQHIGHLL 224 (234)
Q Consensus 216 ~~l~l~~c~ 224 (234)
+.++++++.
T Consensus 175 ~~L~l~~N~ 183 (263)
T 1xeu_A 175 NWIDLTGQK 183 (263)
T ss_dssp CEEEEEEEE
T ss_pred CEEeCCCCc
Confidence 888887654
No 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=6.8e-16 Score=138.15 Aligned_cols=131 Identities=16% Similarity=0.080 Sum_probs=79.4
Q ss_pred CCCcc-EEEEEeeCCCCCCC-CCCccC-CCCccEEEecCCcccc--ccccccCCCCCcEEEcccCcccccCCCC-CCCCC
Q 036876 87 DLGFV-EVKYLHWHGYPLKS-LPSNLS-AEKLVLLEVPGSSIEQ--LWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMP 160 (234)
Q Consensus 87 ~l~~l-~L~~L~l~~~~~~~-lp~~~~-l~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~ 160 (234)
.+..+ +|++|++++|.+.. .|..+. +++|++|++++|++.. +|..++.+++|++|++++|. ++...|. ++.++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLH 497 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc-CCccChhhhcccc
Confidence 34444 56666666665443 333444 6667777777766664 45566667777777777776 4441344 55555
Q ss_pred CCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCC-CCcEEecCCCc
Q 036876 161 HLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVND-ALRIQHIGHLL 224 (234)
Q Consensus 161 ~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~-~L~~l~l~~c~ 224 (234)
+| +.|++++|......|..++++++|++|++++| .+..+|.. +..++ +|+.+++++++
T Consensus 498 ~L---~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~--~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 498 RL---QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGI--LQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TC---CEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESC--GGGSCTTCCEEECCSCC
T ss_pred cC---CEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHh--HhhhcccCcEEEccCCC
Confidence 55 77777775333334566777777777777764 46677776 66665 47777776643
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.66 E-value=2.1e-15 Score=125.43 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=99.3
Q ss_pred CCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccc-cccccCCCCCcEEEcccCcccccCCCC--CCCCCCCC
Q 036876 88 LGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQL-WDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLN 163 (234)
Q Consensus 88 l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~ 163 (234)
+..+ +|++|++++|.+..+|..+ .++|++|++++|+++.+ |..+..+++|++|++++|. ++. ++. ++.+++|
T Consensus 167 ~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L- 242 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISA-VDNGSLANTPHL- 242 (330)
T ss_dssp GGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCE-ECTTTGGGSTTC-
T ss_pred ccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-Cce-eChhhccCCCCC-
Confidence 3344 5666666666666666543 36788888888888766 4568889999999999998 666 543 6666677
Q ss_pred CccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCC------CCCCCcEEecCCCcCCC
Q 036876 164 KLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGI------VNDALRIQHIGHLLAVR 227 (234)
Q Consensus 164 ~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~------~l~~L~~l~l~~c~~l~ 227 (234)
+.|++++ +.+..+|..+..+++|+++++++ +.++.+|... +. ..++++.+++++++--.
T Consensus 243 --~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~-f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 243 --RELHLNN-NKLVKVPGGLADHKYIQVVYLHN-NNISAIGSND-FCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp --CEEECCS-SCCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTS-SSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred --CEEECCC-CcCccCChhhccCCCcCEEECCC-CcCCccChhh-cCCcccccccccccceEeecCcccc
Confidence 9999999 47789999899999999999998 5788887742 22 24789999999987543
No 38
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=7.3e-16 Score=125.04 Aligned_cols=172 Identities=18% Similarity=0.190 Sum_probs=130.0
Q ss_pred EecCCceeeecCchhhCCCCCcceEEecCCCCCCCCccccccc-CCCCcc-EEEEEeeCCCCCCCCC-CccC-CCCccEE
Q 036876 43 LDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYL-QDLGFV-EVKYLHWHGYPLKSLP-SNLS-AEKLVLL 118 (234)
Q Consensus 43 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l-~L~~L~l~~~~~~~lp-~~~~-l~~L~~L 118 (234)
++++......+.+..|.++++|++|++++|.+. .++ ..+..+ +|++|++++|.+..++ ..+. +++|++|
T Consensus 33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred EECCCCcccccCHhHhccccCCcEEECCCCcCC-------ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 344444444555567889999999999999776 444 467777 9999999999987776 4455 8999999
Q ss_pred EecCCccccccc-cccCCCCCcEEEcccCccccc-CCCC-CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCC----
Q 036876 119 EVPGSSIEQLWD-GVKHYSKLNQIIHVACKKLIA-KTPN-PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLT---- 190 (234)
Q Consensus 119 ~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~-~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~---- 190 (234)
++++|++..++. .++.+++|++|++++|. ++. .+|. ++.+++| +.|++++| .+..++ ..+..+++|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L---~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNL---EHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTC---CEEECCSS-CCCEECGGGGHHHHTCTTCCE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCC---CEEECCCC-CCCcCCHHHhhhhhhccccce
Confidence 999999988766 58889999999999998 554 1455 7777777 99999985 566654 4555555555
Q ss_pred EEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCCChh
Q 036876 191 ELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAVRWK 229 (234)
Q Consensus 191 ~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l~~~ 229 (234)
.+++++ +.+..+|.. .....+|+.|++++|.--..|
T Consensus 181 ~L~ls~-n~l~~~~~~--~~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 181 SLDLSL-NPMNFIQPG--AFKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp EEECCS-SCCCEECTT--SSCSCCEEEEECCSSCCSCCC
T ss_pred eeecCC-CcccccCcc--ccCCCcccEEECCCCceeecC
Confidence 899998 567888876 666779999999988643444
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.66 E-value=6.8e-16 Score=139.36 Aligned_cols=146 Identities=16% Similarity=0.214 Sum_probs=70.6
Q ss_pred CcceEEecCCCCCCCCcccccccCCCC-------cc-EEEEEeeCCCCCCCCCCcc-C-CCCccEEEecCCcccc-----
Q 036876 63 KLRFLKFYSSSFNGENKCKVSYLQDLG-------FV-EVKYLHWHGYPLKSLPSNL-S-AEKLVLLEVPGSSIEQ----- 127 (234)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~~~l~-------~l-~L~~L~l~~~~~~~lp~~~-~-l~~L~~L~l~~~~l~~----- 127 (234)
+|+.|++++|.+.+ ..|..+. .+ +|++|++++|.+..+|..+ . +++|++|++++|+++.
T Consensus 403 ~L~~L~Ls~N~l~~------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 403 VMSAIDFSYNEIGS------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp CEEEEECCSSCTTT------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred ccCEEECcCCcCCC------cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 66677777666654 3333333 33 5555555555555555432 2 4445555555554444
Q ss_pred --------------------------cccccc--CCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEec------C
Q 036876 128 --------------------------LWDGVK--HYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILR------G 172 (234)
Q Consensus 128 --------------------------l~~~~~--~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~------~ 172 (234)
+|..+. .+++|++|++++|. ++. +|. ++.+++| +.|+++ +
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~-ip~~~~~l~~L---~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSK-FPTQPLNSSTL---KGFGIRNQRDAQG 551 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSS-CCCGGGGCSSC---CEEECCSCBCTTC
T ss_pred hccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCC-cChhhhcCCCC---CEEECCCCccccc
Confidence 444443 44444445544444 444 444 3333333 555552 2
Q ss_pred CCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 173 SKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 173 ~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
|.....+|..++.+++|++|++++| .++.+|.. +. ++|+.|++++|+
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~--~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK--IT--PNISVLDIKDNP 598 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC--CC--TTCCEEECCSCT
T ss_pred CcccccChHHHhcCCCCCEEECCCC-cCCccCHh--Hh--CcCCEEECcCCC
Confidence 2233344444555555555555552 33555553 22 455555555553
No 40
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=4.6e-16 Score=136.30 Aligned_cols=126 Identities=12% Similarity=0.074 Sum_probs=95.9
Q ss_pred EEEEEeeCCCCCCCCC-CccC-CCCccEEEecCCccccc-ccccc-CCCCCcEEEcccCcccccCCCCCCCCCCCCCccE
Q 036876 92 EVKYLHWHGYPLKSLP-SNLS-AEKLVLLEVPGSSIEQL-WDGVK-HYSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVI 167 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp-~~~~-l~~L~~L~l~~~~l~~l-~~~~~-~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~ 167 (234)
+|++|++++|.+..++ ..+. +++|++|++++|.++.. |..+. .+++|++|++++|. ++. +|....+++| +.
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~-~~~~~~l~~L---~~ 195 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD-VKGQVVFAKL---KT 195 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE-EECCCCCTTC---CE
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccc-ccccccCCCC---CE
Confidence 3566666666665553 3344 77888888888888753 44454 67888888888887 776 6654445555 99
Q ss_pred EEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCC
Q 036876 168 LILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 168 L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l 226 (234)
|++++ +.+..+|..+..+++|+.|++++ +.+..+|.. ++.+++|+.+++++|+-.
T Consensus 196 L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 196 LDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKA--LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTT--CCCCTTCCEEECTTCCBC
T ss_pred EECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchh--hccCCCCCEEEcCCCCCc
Confidence 99998 57778887888999999999998 567889998 889999999999998765
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=1.5e-15 Score=129.02 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=92.5
Q ss_pred eecCchhhCCCCCcceEEecCCCCCCCCccccccc-CCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCccc
Q 036876 51 ICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYL-QDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIE 126 (234)
Q Consensus 51 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~ 126 (234)
..+++..|..+++|++|++++|.+. .++ ..+..+ +|++|++++|.+..+++. +. +++|++|++++|+++
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 130 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIE-------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCC-------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hhCChhHhcccccCcEEECCCCccc-------ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC
Confidence 3455666889999999999999876 444 478888 999999999998888654 55 999999999999999
Q ss_pred ccccc-ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCC
Q 036876 127 QLWDG-VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGS 173 (234)
Q Consensus 127 ~l~~~-~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~ 173 (234)
.+|.. ++.+++|++|++++|. ++. ++. ++.+++| +.|++++|
T Consensus 131 ~l~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L---~~L~l~~n 175 (390)
T 3o6n_A 131 SLPRGIFHNTPKLTTLSMSNNN-LER-IEDDTFQATTSL---QNLQLSSN 175 (390)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCB-CCTTTTSSCTTC---CEEECCSS
T ss_pred cCCHHHhcCCCCCcEEECCCCc-cCc-cChhhccCCCCC---CEEECCCC
Confidence 99887 4889999999999998 776 654 7777777 88888874
No 42
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=4.1e-15 Score=117.68 Aligned_cols=124 Identities=21% Similarity=0.171 Sum_probs=70.9
Q ss_pred EEEEEeeCCCCCCCCC-CccC-CCCccEEEecCCcccccccc-ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCcc
Q 036876 92 EVKYLHWHGYPLKSLP-SNLS-AEKLVLLEVPGSSIEQLWDG-VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLV 166 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp-~~~~-l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~ 166 (234)
++++|++++|.+..++ ..+. +++|++|++++|+++.+|.. +..+++|++|++++|. ++. +|. |+.+++| +
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~-l~~~~~~~l~~L---~ 115 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTV-LPSAVFDRLVHL---K 115 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTC---C
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCc-cChhHhCcchhh---C
Confidence 4555555555555442 3333 56666666666666655544 3556666666666665 555 543 4444444 6
Q ss_pred EEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCC
Q 036876 167 ILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 167 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c 223 (234)
.|++++ +.+..+|..+..+++|++|++++ +.+..+|... +..+++|+.++++++
T Consensus 116 ~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 116 ELFMCC-NKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGA-FDRLSSLTHAYLFGN 169 (229)
T ss_dssp EEECCS-SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTT-TTTCTTCCEEECTTS
T ss_pred eEeccC-CcccccCcccccCCCCCEEECCC-CcCCccCHHH-HhCCCCCCEEEeeCC
Confidence 666666 35556666566666666666666 3555555421 455666666666554
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2.6e-16 Score=146.15 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=102.5
Q ss_pred chhhCCCCCcceEEecCCCCCCCCc--ccc---------cccCCCC--cc-EEEEEeeCCCC-CCCCCCccC-CCCccEE
Q 036876 55 PNTFTKMPKLRFLKFYSSSFNGENK--CKV---------SYLQDLG--FV-EVKYLHWHGYP-LKSLPSNLS-AEKLVLL 118 (234)
Q Consensus 55 ~~~~~~l~~L~~L~l~~~~~~~~~~--~~~---------~~~~~l~--~l-~L~~L~l~~~~-~~~lp~~~~-l~~L~~L 118 (234)
|..|.++++|+.|++++|.+.+..- ... .+|..+. .+ +|++|++++|. .+.+|..+. +++|+.|
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 4567778888888888887764100 000 1677766 66 77888887776 556676665 7777777
Q ss_pred EecCCc-ccc--ccccccCCC-------CCcEEEcccCcccccCCCC---CCCCCCCCCccEEEecCCCCCCcccccccC
Q 036876 119 EVPGSS-IEQ--LWDGVKHYS-------KLNQIIHVACKKLIAKTPN---PTLMPHLNKLVILILRGSKSLKSLPAEIFN 185 (234)
Q Consensus 119 ~l~~~~-l~~--l~~~~~~l~-------~L~~L~l~~~~~l~~~lp~---~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~ 185 (234)
++++|+ ++. +|..++.+. +|++|++++|. ++. +|. ++.+++| +.|++++| .+..+| .++.
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~-ip~~~~l~~L~~L---~~L~Ls~N-~l~~lp-~~~~ 593 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEE-FPASASLQKMVKL---GLLDCVHN-KVRHLE-AFGT 593 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCB-CCCHHHHTTCTTC---CEEECTTS-CCCBCC-CCCT
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCc-cCChhhhhcCCCC---CEEECCCC-Ccccch-hhcC
Confidence 777776 653 665554444 77777777776 555 665 5555555 77777763 444666 5666
Q ss_pred CCCCCEEeccCCCCCCcCCCcccCCCCCC-CcEEecCCCc
Q 036876 186 LECLTELDLSDCSKLKRLPEILSGIVNDA-LRIQHIGHLL 224 (234)
Q Consensus 186 l~~L~~L~l~~c~~l~~lp~~~~~~~l~~-L~~l~l~~c~ 224 (234)
+++|++|++++| .+..+|.. ++.+++ |+.|++++|.
T Consensus 594 L~~L~~L~Ls~N-~l~~lp~~--l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 594 NVKLTDLKLDYN-QIEEIPED--FCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp TSEESEEECCSS-CCSCCCTT--SCEECTTCCEEECCSSC
T ss_pred CCcceEEECcCC-ccccchHH--HhhccccCCEEECcCCC
Confidence 667777777663 44566665 666666 7777766664
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=1.6e-15 Score=135.86 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=96.5
Q ss_pred ecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEEe
Q 036876 44 DMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEV 120 (234)
Q Consensus 44 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l 120 (234)
++.......+++..|..+++|++|++++|.+.+ ..|..+..+ +|++|++++|.+..+|+. +. +++|++|++
T Consensus 57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE------IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp EESSCEESEECTHHHHHCCCCSEEECTTSCCCE------ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC------CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 334443445666778889999999999998873 334578888 999999999999888765 45 999999999
Q ss_pred cCCcccccccc-ccCCCCCcEEEcccCcccccCCC-C-CCCCCCCCCccEEEecCC
Q 036876 121 PGSSIEQLWDG-VKHYSKLNQIIHVACKKLIAKTP-N-PTLMPHLNKLVILILRGS 173 (234)
Q Consensus 121 ~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~lp-~-~~~l~~L~~l~~L~l~~~ 173 (234)
++|.++.+|.. ++++++|++|++++|. ++. ++ . |+.+++| +.|++++|
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L---~~L~L~~N 181 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNN-LER-IEDDTFQATTSL---QNLQLSSN 181 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCB-CCTTTTTTCTTC---CEEECTTS
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCc-CCC-CChhhhhcCCcC---cEEECcCC
Confidence 99999999887 5899999999999998 666 54 3 7777777 88888875
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=3.9e-15 Score=119.27 Aligned_cols=145 Identities=22% Similarity=0.250 Sum_probs=119.0
Q ss_pred EecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEE
Q 036876 43 LDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLE 119 (234)
Q Consensus 43 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~ 119 (234)
+++.......+.+..|.++++|+.|++++|.+.+ ..+..+..+ +|++|++++|.+..+|.. +. +++|++|+
T Consensus 40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT------LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEccCCCcCccCHhHhcCcccCCEEECCCCcCCc------cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 3445544445666789999999999999998874 344557888 999999999999888854 45 89999999
Q ss_pred ecCCcccccccc-ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEecc
Q 036876 120 VPGSSIEQLWDG-VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLS 195 (234)
Q Consensus 120 l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~ 195 (234)
+++|+++.+|.. +..+++|++|++++|. ++. +|. |+.+++| +.|++++ +.+..+|. .+..+++|++++++
T Consensus 114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L---~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQS-IPAGAFDKLTNL---QTLSLST-NQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTC---CEEECCS-SCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCCcCCCcChhHhccCCcccEEECcCCc-CCc-cCHHHcCcCcCC---CEEECCC-CcCCccCHHHHhCCCCCCEEEee
Confidence 999999998876 5889999999999997 887 775 6777777 9999999 46667664 68899999999999
Q ss_pred CCCC
Q 036876 196 DCSK 199 (234)
Q Consensus 196 ~c~~ 199 (234)
+|+.
T Consensus 188 ~N~~ 191 (251)
T 3m19_A 188 GNQF 191 (251)
T ss_dssp SCCB
T ss_pred CCce
Confidence 9643
No 46
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=4.7e-15 Score=116.68 Aligned_cols=124 Identities=20% Similarity=0.278 Sum_probs=73.4
Q ss_pred EEEEEeeCCCCCCCCCC-ccC-CCCccEEEecCCccccc-cccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCcc
Q 036876 92 EVKYLHWHGYPLKSLPS-NLS-AEKLVLLEVPGSSIEQL-WDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLV 166 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~-~~~-l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~ 166 (234)
+++.|++++|.+..+++ .+. +.+|++|++++|+++.+ |..+..+++|++|++++|. ++. +|. |..+++| +
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~-l~~~~f~~l~~L---~ 107 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITE-LPKSLFEGLFSL---Q 107 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCC-CCTTTTTTCTTC---C
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCc-cCHhHccCCCCC---C
Confidence 45566666666555553 344 56666666666666655 4456666666666666665 555 554 4455555 6
Q ss_pred EEEecCCCCCCcc-cccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCC
Q 036876 167 ILILRGSKSLKSL-PAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 167 ~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c 223 (234)
.|++++| .+..+ |..+..+++|++|++++ +.+..+|... +..+++|+.++++++
T Consensus 108 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 108 LLLLNAN-KINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGT-FSPLRAIQTMHLAQN 162 (220)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTT-TTTCTTCCEEECCSS
T ss_pred EEECCCC-CCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHH-HhCCCCCCEEEeCCC
Confidence 6666663 44443 34566666666666666 3455555431 555666666666654
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.64 E-value=1.8e-15 Score=135.38 Aligned_cols=181 Identities=14% Similarity=-0.009 Sum_probs=140.2
Q ss_pred ceeeEEEecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCC--ccC-C
Q 036876 37 KIEGICLDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPS--NLS-A 112 (234)
Q Consensus 37 ~i~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~--~~~-l 112 (234)
.++.+.+..+.+......+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+...++ .+. +
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-------EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-------cchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 344443333333333333677889999999999999766 677788888 99999999999766654 555 8
Q ss_pred CCccEEEecCCcccc-ccccccCCCCCcEEEcccCccccc-CCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCC
Q 036876 113 EKLVLLEVPGSSIEQ-LWDGVKHYSKLNQIIHVACKKLIA-KTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECL 189 (234)
Q Consensus 113 ~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~~~~l~~-~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L 189 (234)
++|++|++++|++.. .|..++.+++|++|++++|. ++. .+|. ++.+++| +.|++++|......|..++++++|
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L---~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNL---TFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTC---CEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCC---CEEECCCCcCCccChhhhcccccC
Confidence 999999999999986 56678999999999999998 543 1566 7777777 999999964444456779999999
Q ss_pred CEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCCChhh
Q 036876 190 TELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAVRWKE 230 (234)
Q Consensus 190 ~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l~~~~ 230 (234)
++|++++|......|.. ++.+++|+.|++++|.--..|+
T Consensus 500 ~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSH--YNQLYSLSTLDCSFNRIETSKG 538 (606)
T ss_dssp CEEECCSSCCSCEEGGG--TTTCTTCCEEECTTSCCCCEES
T ss_pred CEEECCCCcCCCcCHHH--ccCCCcCCEEECCCCcCcccCH
Confidence 99999997554445776 8999999999999997545554
No 48
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.6e-15 Score=135.99 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=127.0
Q ss_pred hhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccC
Q 036876 56 NTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKH 134 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~ 134 (234)
+.+..+++|+.|++++|.+.+ ++. +..+ +|+.|++++|.+..+|....+++|+.|++++|++..+ ..+..
T Consensus 59 ~~l~~l~~L~~L~Ls~N~l~~-------~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~ 129 (605)
T 1m9s_A 59 QGIQYLPNVTKLFLNGNKLTD-------IKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI-NGLVH 129 (605)
T ss_dssp TTGGGCTTCCEEECTTSCCCC-------CGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC-GGGGG
T ss_pred hHHccCCCCCEEEeeCCCCCC-------Chh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC-ccccC
Confidence 357889999999999998773 443 6677 9999999999998887433499999999999999987 46888
Q ss_pred CCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCC
Q 036876 135 YSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDA 214 (234)
Q Consensus 135 l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~ 214 (234)
+++|+.|++++|. +.. ++.++.+++| +.|++++| .+..++. +..+++|++|++++| .+..+|. +..+++
T Consensus 130 l~~L~~L~Ls~N~-l~~-l~~l~~l~~L---~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~ 198 (605)
T 1m9s_A 130 LPQLESLYLGNNK-ITD-ITVLSRLTKL---DTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKN 198 (605)
T ss_dssp CTTCSEEECCSSC-CCC-CGGGGSCTTC---SEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTT
T ss_pred CCccCEEECCCCc-cCC-chhhcccCCC---CEEECcCC-cCCCchh-hccCCCCCEEECcCC-CCCCChH---HccCCC
Confidence 9999999999998 888 7657777777 99999995 6666665 889999999999995 7788876 899999
Q ss_pred CcEEecCCCcC
Q 036876 215 LRIQHIGHLLA 225 (234)
Q Consensus 215 L~~l~l~~c~~ 225 (234)
|+.|++++|.-
T Consensus 199 L~~L~L~~N~l 209 (605)
T 1m9s_A 199 LDVLELFSQEC 209 (605)
T ss_dssp CSEEECCSEEE
T ss_pred CCEEEccCCcC
Confidence 99999998754
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.64 E-value=2.6e-15 Score=130.84 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=89.5
Q ss_pred ecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccC-CCCcc-EEEEEeeCCCCCCCCC-CccC-CCCccEEE
Q 036876 44 DMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQ-DLGFV-EVKYLHWHGYPLKSLP-SNLS-AEKLVLLE 119 (234)
Q Consensus 44 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~l-~L~~L~l~~~~~~~lp-~~~~-l~~L~~L~ 119 (234)
+++.+....+.+..|.++++|++|++++|.+. .+|. .+..+ +|++|++++|.+..++ ..+. +++|++|+
T Consensus 62 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-------SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ECCCCccCEeChhhhhCCccCCEEECCCCcCC-------ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 44444334455677888888889988888776 4443 35666 7888888877766553 3444 77777777
Q ss_pred ecCCccccc-cccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEecc
Q 036876 120 VPGSSIEQL-WDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLS 195 (234)
Q Consensus 120 l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~ 195 (234)
+++|.+..+ +..+..+++|++|++++|. ++. +|. ++.+++| +.|++++| .+..++ ..+..+++|+.|+++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~~L---~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTS-IPTEALSHLHGL---IVLRLRHL-NINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCC-CSS-CCHHHHTTCTTC---CEEEEESC-CCCEECTTCSCSCTTCCEEEEE
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCc-Ccc-cChhHhcccCCC---cEEeCCCC-cCcEeChhhcccCcccceeeCC
Confidence 777777655 3346667777777777775 555 543 4444444 55555553 333332 234455555555555
Q ss_pred CCCCCCcCCC
Q 036876 196 DCSKLKRLPE 205 (234)
Q Consensus 196 ~c~~l~~lp~ 205 (234)
+|+.+..+|.
T Consensus 209 ~~~~~~~~~~ 218 (477)
T 2id5_A 209 HWPYLDTMTP 218 (477)
T ss_dssp CCTTCCEECT
T ss_pred CCccccccCc
Confidence 5444444443
No 50
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=3.5e-15 Score=134.72 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=120.1
Q ss_pred EecCCceeeecCchhhCCCCC-cceEEecCCCCCCCCcccccccCCCCcc---EEEEEeeCCCCCCC-CCCcc-------
Q 036876 43 LDMSKVKEICLNPNTFTKMPK-LRFLKFYSSSFNGENKCKVSYLQDLGFV---EVKYLHWHGYPLKS-LPSNL------- 110 (234)
Q Consensus 43 l~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~l~~l---~L~~L~l~~~~~~~-lp~~~------- 110 (234)
+++..+....+ +..+..+++ |+.|++++|.+. .+|..+... +|++|++++|.+.. .|..+
T Consensus 358 L~L~~N~l~~l-p~~l~~l~~~L~~L~Ls~N~l~-------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 358 LNLAYNQITEI-PANFCGFTEQVENLSFAHNKLK-------YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EECCSSEEEEC-CTTSEEECTTCCEEECCSSCCS-------SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred EECCCCccccc-cHhhhhhcccCcEEEccCCcCc-------ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 34444432333 456888999 999999999877 677776654 79999999998754 33332
Q ss_pred -CCCCccEEEecCCccccccccc-cCCCCCcEEEcccCcccccCCCC--CCCCC----CCCCccEEEecCCCCCCccccc
Q 036876 111 -SAEKLVLLEVPGSSIEQLWDGV-KHYSKLNQIIHVACKKLIAKTPN--PTLMP----HLNKLVILILRGSKSLKSLPAE 182 (234)
Q Consensus 111 -~l~~L~~L~l~~~~l~~l~~~~-~~l~~L~~L~l~~~~~l~~~lp~--~~~l~----~L~~l~~L~l~~~~~l~~lp~~ 182 (234)
.+.+|++|++++|+++.+|..+ ..+++|++|++++|. ++. +|. +.... ++++|+.|++++| .+..+|..
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~ 506 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTE-IPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDD 506 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSB-CCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGG
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCC-cCHHHhccccccccccCCccEEECcCC-cCCccChh
Confidence 3568999999999999998874 458889999999887 667 776 32221 1223388888874 56677877
Q ss_pred cc--CCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCC
Q 036876 183 IF--NLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGH 222 (234)
Q Consensus 183 ~~--~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~ 222 (234)
+. .+++|++|++++| .+..+|.. ++.+++|+.|++++
T Consensus 507 ~~~~~l~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYN-SFSKFPTQ--PLNSSTLKGFGIRN 545 (636)
T ss_dssp GSTTTCTTCCEEECCSS-CCSSCCCG--GGGCSSCCEEECCS
T ss_pred hhhccCCCcCEEECCCC-CCCCcChh--hhcCCCCCEEECCC
Confidence 65 7888888888874 55557777 77788888888754
No 51
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=7.1e-15 Score=127.08 Aligned_cols=107 Identities=18% Similarity=0.139 Sum_probs=74.9
Q ss_pred ccC-CCCccEEEecCCccccc-cccccCCCCCcEEEcccCcccccCC-CC-CCCCCCCCCccEEEecCCCCCCcc-cccc
Q 036876 109 NLS-AEKLVLLEVPGSSIEQL-WDGVKHYSKLNQIIHVACKKLIAKT-PN-PTLMPHLNKLVILILRGSKSLKSL-PAEI 183 (234)
Q Consensus 109 ~~~-l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~l-p~-~~~l~~L~~l~~L~l~~~~~l~~l-p~~~ 183 (234)
.+. +++|++|++++|++..+ |..++.+++|++|++++|. ++. + |. ++.+++| +.|++++| .+..+ |..+
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L---~~L~Ls~N-~l~~~~~~~~ 367 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGS-IDSRMFENLDKL---EVLDLSYN-HIRALGDQSF 367 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCE-ECGGGGTTCTTC---CEEECCSS-CCCEECTTTT
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCC-cChhHhcCcccC---CEEECCCC-cccccChhhc
Confidence 344 67777777777777765 4457777778888888776 555 4 33 6666666 88888875 44444 5677
Q ss_pred cCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCC
Q 036876 184 FNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 184 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c 223 (234)
+++++|++|++++ +.+..+|... +..+++|+.++++++
T Consensus 368 ~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 368 LGLPNLKELALDT-NQLKSVPDGI-FDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTCTTCCEEECCS-SCCSCCCTTT-TTTCTTCCEEECCSS
T ss_pred cccccccEEECCC-CccccCCHhH-hccCCcccEEEccCC
Confidence 8888888888887 4667777652 567888888888764
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.64 E-value=2.2e-16 Score=139.67 Aligned_cols=143 Identities=15% Similarity=0.099 Sum_probs=95.1
Q ss_pred ecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEEe
Q 036876 44 DMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEV 120 (234)
Q Consensus 44 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l 120 (234)
+++......+.+..|.++++|++|++++|.+.+ ..|..+..+ +|++|++++|.+..+++. +. +++|++|++
T Consensus 32 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 32 DLSFNKITYIGHGDLRACANLQVLILKSSRINT------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp ECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred ECcCCccCccChhhhhcCCcccEEECCCCCcCc------cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 344433334455677788888888888887663 334567777 888888888887777654 55 788888888
Q ss_pred cCCcccc--ccccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccC
Q 036876 121 PGSSIEQ--LWDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSD 196 (234)
Q Consensus 121 ~~~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~ 196 (234)
++|+++. .|..++++++|++|++++|..++. +|. ++.+++| +.|++++|......|..++.+++|+++++++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L---~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE-IRRIDFAGLTSL---NELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEE---EEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccc-cCHhhhhccccc---CeeeccCCcccccChhhhhccccCceEeccc
Confidence 8888774 355677788888888888765566 653 5555555 8888877544434555565555555555544
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.63 E-value=2.4e-15 Score=134.61 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=136.1
Q ss_pred EEecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCC-CCccC-CCCccEE
Q 036876 42 CLDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSL-PSNLS-AEKLVLL 118 (234)
Q Consensus 42 ~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~l-p~~~~-l~~L~~L 118 (234)
.+|++...-..+.+..|.++++|++|++++|.+.+ ..|..+..+ +|++|++++|.+..+ |..+. +++|++|
T Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW------IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE------ECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred EEEccCCccCcCChhHhccCccceEEECCCCccce------eChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 34555554455667889999999999999998763 457778899 999999999998766 55666 9999999
Q ss_pred EecCCccccc-cccccCCCCCcEEEcccCcccccCC--CCCCCCCCCCCccEEEecCCCCCCcc-cccccCCCCCC--EE
Q 036876 119 EVPGSSIEQL-WDGVKHYSKLNQIIHVACKKLIAKT--PNPTLMPHLNKLVILILRGSKSLKSL-PAEIFNLECLT--EL 192 (234)
Q Consensus 119 ~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~l--p~~~~l~~L~~l~~L~l~~~~~l~~l-p~~~~~l~~L~--~L 192 (234)
++++|+++.+ +..++++++|++|++++|. +.. + |.+..+++| +.|++++| .+..+ |..++.+++|+ ++
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L---~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISS-IKLPKGFPTEKL---KVLDFQNN-AIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCC-CCCCTTCCCTTC---CEEECCSS-CCCEECHHHHHTTTTCCSEEE
T ss_pred eccccCcccCCcchhccCCcccEEECCCCc-ccc-cCcccccCCccc---CEEEcccC-cccccChhhhhhhcccceeEE
Confidence 9999999987 5678999999999999998 666 5 545556666 99999995 55555 56788999999 89
Q ss_pred eccCCCCCCcCCCcccCCCCCCCcEEecCCCcC
Q 036876 193 DLSDCSKLKRLPEILSGIVNDALRIQHIGHLLA 225 (234)
Q Consensus 193 ~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~ 225 (234)
++++| .+..+++. .....+|+.+++++|..
T Consensus 185 ~l~~n-~l~~~~~~--~~~~~~L~~L~l~~~~~ 214 (606)
T 3t6q_A 185 NLNGN-DIAGIEPG--AFDSAVFQSLNFGGTQN 214 (606)
T ss_dssp ECTTC-CCCEECTT--TTTTCEEEEEECTTCSC
T ss_pred ecCCC-ccCccChh--HhhhccccccccCCchh
Confidence 99995 56666665 67778999999999874
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.63 E-value=1.7e-15 Score=126.65 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=76.4
Q ss_pred hCCCCCcceEEecCCCCCCCCccc--------------c-cccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEe
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCK--------------V-SYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEV 120 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~--------------~-~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l 120 (234)
+..+++|+.|++++|.+.+..... + ..+. +..+ +|++|++++|.+..++. +. +++|++|++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEI 250 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEEC
Confidence 667777777777777655321100 0 0000 2223 45555555555544444 32 555555555
Q ss_pred cCCccccccccccCCCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCC
Q 036876 121 PGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKL 200 (234)
Q Consensus 121 ~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l 200 (234)
++|.++.+ ..+..+++|++|++++|. ++. ++.+..+++| +.|++++|......|..++.+++|+++++++| .+
T Consensus 251 ~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~-~~~~~~l~~L---~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l 323 (347)
T 4fmz_A 251 GTNQISDI-NAVKDLTKLKMLNVGSNQ-ISD-ISVLNNLSQL---NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HI 323 (347)
T ss_dssp CSSCCCCC-GGGTTCTTCCEEECCSSC-CCC-CGGGGGCTTC---SEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SC
T ss_pred CCCccCCC-hhHhcCCCcCEEEccCCc-cCC-ChhhcCCCCC---CEEECcCCcCCCcChhHhhccccCCEEEccCC-cc
Confidence 55555544 234455555555555554 444 4434444444 55555554332233344555555666666553 34
Q ss_pred CcCCCcccCCCCCCCcEEecCCCc
Q 036876 201 KRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 201 ~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
..+++ +..+++|+.+++++|.
T Consensus 324 ~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 324 TDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CCCGG---GGGCTTCSEESSSCC-
T ss_pred ccccC---hhhhhccceeehhhhc
Confidence 44444 4555556666655553
No 55
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=5.9e-16 Score=143.74 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=119.4
Q ss_pred chhhC--CCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCC-CCC--CCCccC--------CCCccEEEe
Q 036876 55 PNTFT--KMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYP-LKS--LPSNLS--------AEKLVLLEV 120 (234)
Q Consensus 55 ~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~-~~~--lp~~~~--------l~~L~~L~l 120 (234)
|..+. ++++|+.|++++|.+.+ .+|..+..+ +|++|++++|. +.. +|..+. +++|++|++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~------~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMT------QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCC------SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred ChhhhhccCCCCCEEECcCCCCCc------cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence 44544 89999999999998776 778888888 89999999887 664 665443 348999999
Q ss_pred cCCccccccc--cccCCCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCC-CCEEeccCC
Q 036876 121 PGSSIEQLWD--GVKHYSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLEC-LTELDLSDC 197 (234)
Q Consensus 121 ~~~~l~~l~~--~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~-L~~L~l~~c 197 (234)
++|++..+|. .++++++|++|++++|. ++. +|.++.+++| +.|++++| .+..+|..+..+++ |++|++++|
T Consensus 556 s~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~-lp~~~~L~~L---~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 556 GYNNLEEFPASASLQKMVKLGLLDCVHNK-VRH-LEAFGTNVKL---TDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCB-CCCCCTTSEE---SEEECCSS-CCSCCCTTSCEECTTCCEEECCSS
T ss_pred eCCcCCccCChhhhhcCCCCCEEECCCCC-ccc-chhhcCCCcc---eEEECcCC-ccccchHHHhhccccCCEEECcCC
Confidence 9998888888 78888899999998887 667 8866666555 88888884 55588877888888 888888884
Q ss_pred CCCCcCCCcccCCCCCC--CcEEecCCCcC
Q 036876 198 SKLKRLPEILSGIVNDA--LRIQHIGHLLA 225 (234)
Q Consensus 198 ~~l~~lp~~~~~~~l~~--L~~l~l~~c~~ 225 (234)
.+..+|.. ++.++. |+.|++++|.-
T Consensus 630 -~L~~lp~~--~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 630 -KLKYIPNI--FNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp -CCCSCCSC--CCTTCSSCEEEEECCSSCT
T ss_pred -CCCcCchh--hhccccCCCCEEECcCCcC
Confidence 46678875 555543 77777776643
No 56
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=1.6e-15 Score=124.25 Aligned_cols=151 Identities=15% Similarity=0.181 Sum_probs=126.8
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCC
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHY 135 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l 135 (234)
+..+++|+.|++++|.+. .++ .+..+ +|++|++++|.+..+++ +. +++|++|++++|+++.++. +..+
T Consensus 42 ~~~l~~L~~L~l~~~~i~-------~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l 111 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK-------SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDL 111 (291)
T ss_dssp HHHHHTCCEEECTTSCCC-------CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred hhhcCcccEEEccCCCcc-------cCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccC
Confidence 446788999999999776 343 46677 99999999999998887 55 9999999999999998764 8899
Q ss_pred CCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCC
Q 036876 136 SKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDAL 215 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L 215 (234)
++|++|++++|. ++. ++.++.+++| +.|++++| .+..+ ..++.+++|++|++++ +.+..+++ +..+++|
T Consensus 112 ~~L~~L~L~~n~-i~~-~~~l~~l~~L---~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~---l~~l~~L 180 (291)
T 1h6t_A 112 KKLKSLSLEHNG-ISD-INGLVHLPQL---ESLYLGNN-KITDI-TVLSRLTKLDTLSLED-NQISDIVP---LAGLTKL 180 (291)
T ss_dssp TTCCEEECTTSC-CCC-CGGGGGCTTC---CEEECCSS-CCCCC-GGGGGCTTCSEEECCS-SCCCCCGG---GTTCTTC
T ss_pred CCCCEEECCCCc-CCC-ChhhcCCCCC---CEEEccCC-cCCcc-hhhccCCCCCEEEccC-Cccccchh---hcCCCcc
Confidence 999999999998 888 8767777777 99999994 67777 4688999999999998 47888887 7999999
Q ss_pred cEEecCCCcCCChh
Q 036876 216 RIQHIGHLLAVRWK 229 (234)
Q Consensus 216 ~~l~l~~c~~l~~~ 229 (234)
+.|++++|.--..+
T Consensus 181 ~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 181 QNLYLSKNHISDLR 194 (291)
T ss_dssp CEEECCSSCCCBCG
T ss_pred CEEECCCCcCCCCh
Confidence 99999998543343
No 57
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=5.3e-15 Score=119.89 Aligned_cols=154 Identities=25% Similarity=0.313 Sum_probs=125.4
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCcccccccc-ccC
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDG-VKH 134 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~-~~~ 134 (234)
...+++|+.|.++++.+. .+ ..+..+ +|++|++++|.+..++ .+. +++|++|++++|+++.++.. ++.
T Consensus 37 ~~~l~~L~~L~l~~~~i~-------~~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-------SV-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-------CC-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred cccccceeeeeeCCCCcc-------cc-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcC
Confidence 446789999999999664 22 346677 9999999999988876 444 99999999999999988765 688
Q ss_pred CCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccCCCCCCcCCCcccCCC
Q 036876 135 YSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDCSKLKRLPEILSGIV 211 (234)
Q Consensus 135 l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~ 211 (234)
+++|++|++++|. ++. ++. ++.+++| +.|++++| .+..+|. .++.+++|++|++++| .+..+|+.. ++.
T Consensus 108 l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L---~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~ 179 (272)
T 3rfs_A 108 LTNLKELVLVENQ-LQS-LPDGVFDKLTNL---TYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGV-FDK 179 (272)
T ss_dssp CTTCCEEECTTSC-CCC-CCTTTTTTCTTC---CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-TTT
T ss_pred CcCCCEEECCCCc-CCc-cCHHHhccCCCC---CEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHH-hcC
Confidence 9999999999998 777 765 6777777 99999995 6667664 4789999999999995 667777652 578
Q ss_pred CCCCcEEecCCCcCCCh
Q 036876 212 NDALRIQHIGHLLAVRW 228 (234)
Q Consensus 212 l~~L~~l~l~~c~~l~~ 228 (234)
+++|+.|++++|.--..
T Consensus 180 l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 180 LTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp CTTCCEEECCSSCCSCC
T ss_pred CccCCEEECCCCcCCcc
Confidence 99999999998864443
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=127.30 Aligned_cols=155 Identities=13% Similarity=0.107 Sum_probs=128.9
Q ss_pred CCcceEEecCCCCCCCCcccccccC-CCCcc-EEEEEeeCCCCCCCCCC-ccC-CCCccEEEecCCcccccccc-ccCCC
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYLQ-DLGFV-EVKYLHWHGYPLKSLPS-NLS-AEKLVLLEVPGSSIEQLWDG-VKHYS 136 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~l-~L~~L~l~~~~~~~lp~-~~~-l~~L~~L~l~~~~l~~l~~~-~~~l~ 136 (234)
++|+.|++++|.+. .++. .+..+ +|++|++++|.+..+++ .+. +++|++|++++|+++.+|.. ++.++
T Consensus 52 ~~L~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccCcEEECCCCcCc-------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 48999999999877 4554 67888 99999999999887754 466 89999999999999999877 88999
Q ss_pred CCcEEEcccCcccccCCCC---CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccCCCCCCcCCCcccCCCC
Q 036876 137 KLNQIIHVACKKLIAKTPN---PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKLKRLPEILSGIVN 212 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp~---~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l 212 (234)
+|++|++++|. ++. +|. ++.+++| +.|++++|+.+..++ ..++++++|++|++++|......|.. ++.+
T Consensus 125 ~L~~L~L~~n~-l~~-l~~~~~~~~l~~L---~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l 197 (353)
T 2z80_A 125 SLTFLNLLGNP-YKT-LGETSLFSHLTKL---QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS--LKSI 197 (353)
T ss_dssp TCSEEECTTCC-CSS-SCSSCSCTTCTTC---CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT--TTTC
T ss_pred cCCEEECCCCC-Ccc-cCchhhhccCCCC---cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH--Hhcc
Confidence 99999999998 777 775 5556666 999999976777775 57889999999999996544444666 8999
Q ss_pred CCCcEEecCCCcCCChhh
Q 036876 213 DALRIQHIGHLLAVRWKE 230 (234)
Q Consensus 213 ~~L~~l~l~~c~~l~~~~ 230 (234)
++|++|+++++..-..|+
T Consensus 198 ~~L~~L~l~~n~l~~~~~ 215 (353)
T 2z80_A 198 QNVSHLILHMKQHILLLE 215 (353)
T ss_dssp SEEEEEEEECSCSTTHHH
T ss_pred ccCCeecCCCCccccchh
Confidence 999999999987555554
No 59
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=9.4e-15 Score=114.93 Aligned_cols=143 Identities=13% Similarity=0.146 Sum_probs=91.5
Q ss_pred ceEEecCCCCCCCCcccccccCCCCccEEEEEeeCCCCCCCCCC--ccC-CCCccEEEecCCccccccc-cccCCCCCcE
Q 036876 65 RFLKFYSSSFNGENKCKVSYLQDLGFVEVKYLHWHGYPLKSLPS--NLS-AEKLVLLEVPGSSIEQLWD-GVKHYSKLNQ 140 (234)
Q Consensus 65 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~L~~L~l~~~~~~~lp~--~~~-l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~ 140 (234)
+.++++++.+. .+|..+.. .+++|++++|.+..+++ .+. +++|++|++++|+++.++. .+..+++|++
T Consensus 14 ~~l~~s~n~l~-------~iP~~~~~-~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLN-------KIPEHIPQ-YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSCCS-------SCCSCCCT-TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEeEeCCCCcc-------cCccCCCC-CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 45666666555 44443322 35667777777666632 244 7777777777777776655 4677777777
Q ss_pred EEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcc-cccccCCCCCCEEeccCCCCCCcC-CCcccCCCCCCCc
Q 036876 141 IIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSL-PAEIFNLECLTELDLSDCSKLKRL-PEILSGIVNDALR 216 (234)
Q Consensus 141 L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~l~~L~ 216 (234)
|++++|. ++. ++. |+.+++| +.|++++| .+..+ |..+.++++|++|++++ +.+..+ |.. +..+++|+
T Consensus 86 L~Ls~N~-l~~-~~~~~~~~l~~L---~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~--~~~l~~L~ 156 (220)
T 2v70_A 86 ILLTSNR-LEN-VQHKMFKGLESL---KTLMLRSN-RITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGA--FDTLHSLS 156 (220)
T ss_dssp EECCSSC-CCC-CCGGGGTTCSSC---CEEECTTS-CCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTT--TTTCTTCC
T ss_pred EECCCCc-cCc-cCHhHhcCCcCC---CEEECCCC-cCCeECHhHcCCCccCCEEECCC-CcCCEECHHH--hcCCCCCC
Confidence 7777776 565 544 5566666 77777774 44444 45677777777777777 455555 444 67777777
Q ss_pred EEecCCCc
Q 036876 217 IQHIGHLL 224 (234)
Q Consensus 217 ~l~l~~c~ 224 (234)
.+++++++
T Consensus 157 ~L~L~~N~ 164 (220)
T 2v70_A 157 TLNLLANP 164 (220)
T ss_dssp EEECCSCC
T ss_pred EEEecCcC
Confidence 77777653
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=6.1e-15 Score=122.75 Aligned_cols=161 Identities=16% Similarity=0.177 Sum_probs=115.9
Q ss_pred cCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCccEEEEEeeCCCCCCCCCCccCCCCccEEEecCCcccccc-cc
Q 036876 53 LNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFVEVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLW-DG 131 (234)
Q Consensus 53 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~-~~ 131 (234)
+.+..|.++++|+.|++++|.+.... ..+..+..++|++|++++|.+..+|..+ .++|++|++++|+++.++ ..
T Consensus 138 ~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~~~l~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~ 212 (332)
T 2ft3_A 138 VPKGVFSGLRNMNCIEMGGNPLENSG----FEPGAFDGLKLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELED 212 (332)
T ss_dssp CCSGGGSSCSSCCEEECCSCCCBGGG----SCTTSSCSCCCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTTS
T ss_pred cCHhHhCCCccCCEEECCCCccccCC----CCcccccCCccCEEECcCCCCCccCccc-cCCCCEEECCCCcCCccCHHH
Confidence 33445667777777777777553100 1233333336777777777777777544 368888999999888775 56
Q ss_pred ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccC
Q 036876 132 VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSG 209 (234)
Q Consensus 132 ~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 209 (234)
+..+++|++|++++|. ++. ++. ++.+++| +.|++++ +.+..+|..+..+++|++|++++ +.+..+|... +
T Consensus 213 l~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~~L---~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~-~ 284 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQ-IRM-IENGSLSFLPTL---RELHLDN-NKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVND-F 284 (332)
T ss_dssp STTCTTCSCCBCCSSC-CCC-CCTTGGGGCTTC---CEEECCS-SCCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTS-S
T ss_pred hcCCCCCCEEECCCCc-CCc-CChhHhhCCCCC---CEEECCC-CcCeecChhhhcCccCCEEECCC-CCCCccChhH-c
Confidence 8889999999999997 776 654 6667777 9999998 57778998889999999999998 5677777642 3
Q ss_pred CC------CCCCcEEecCCCcCC
Q 036876 210 IV------NDALRIQHIGHLLAV 226 (234)
Q Consensus 210 ~~------l~~L~~l~l~~c~~l 226 (234)
.. .++|+.+++++++..
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSC
T ss_pred cccccccccccccceEeecCccc
Confidence 22 467889999888654
No 61
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.62 E-value=9.1e-15 Score=126.39 Aligned_cols=85 Identities=22% Similarity=0.182 Sum_probs=49.0
Q ss_pred ccCCCCCcEEEcccCcccccCC-CC-CCCCCCCCCccEEEecCCCCCCcc-cccccCCCCCCEEeccCCCCCCcC-CCcc
Q 036876 132 VKHYSKLNQIIHVACKKLIAKT-PN-PTLMPHLNKLVILILRGSKSLKSL-PAEIFNLECLTELDLSDCSKLKRL-PEIL 207 (234)
Q Consensus 132 ~~~l~~L~~L~l~~~~~l~~~l-p~-~~~l~~L~~l~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~l-p~~~ 207 (234)
++.+++|++|++++|. ++. + |. |+.+++| +.|++++| .+..+ |..++++++|++|++++| .+..+ |..
T Consensus 295 ~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L---~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~- 366 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNE-INK-IDDNAFWGLTHL---LKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQS- 366 (455)
T ss_dssp TTTCTTCCEEECTTSC-CCE-ECTTTTTTCTTC---CEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTTT-
T ss_pred cccCCCCCEEECCCCc-ccc-cChhHhcCcccC---CEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChhh-
Confidence 4445555555555555 333 3 32 4444444 77777664 34444 455666777777777764 34444 444
Q ss_pred cCCCCCCCcEEecCCCcC
Q 036876 208 SGIVNDALRIQHIGHLLA 225 (234)
Q Consensus 208 ~~~~l~~L~~l~l~~c~~ 225 (234)
++.+++|++|++++|.-
T Consensus 367 -~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 367 -FLGLPNLKELALDTNQL 383 (455)
T ss_dssp -TTTCTTCCEEECCSSCC
T ss_pred -ccccccccEEECCCCcc
Confidence 66777777777777643
No 62
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.62 E-value=7.6e-15 Score=122.62 Aligned_cols=148 Identities=15% Similarity=0.117 Sum_probs=92.6
Q ss_pred hhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCC
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHY 135 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l 135 (234)
.+..+++|++|++++|.+. .++. +..+ +|++|++++|.+..++....+++|++|++++|++..++. +..+
T Consensus 61 ~~~~~~~L~~L~l~~n~i~-------~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l 131 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQIT-------DISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANL 131 (347)
T ss_dssp TGGGCTTCCEEECCSSCCC-------CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred hhhhcCCccEEEccCCccc-------cchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccC
Confidence 4677888888888888766 3443 5666 788888888877776532237888888888888777765 6677
Q ss_pred CCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCC
Q 036876 136 SKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDAL 215 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L 215 (234)
++|++|++++|..... ++.++.+++| +.|++++| .+..++. +..+++|+++++++| .+..++. +..+++|
T Consensus 132 ~~L~~L~l~~n~~~~~-~~~~~~l~~L---~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L 201 (347)
T 4fmz_A 132 TKMYSLNLGANHNLSD-LSPLSNMTGL---NYLTVTES-KVKDVTP-IANLTDLYSLSLNYN-QIEDISP---LASLTSL 201 (347)
T ss_dssp TTCCEEECTTCTTCCC-CGGGTTCTTC---CEEECCSS-CCCCCGG-GGGCTTCSEEECTTS-CCCCCGG---GGGCTTC
T ss_pred CceeEEECCCCCCccc-ccchhhCCCC---cEEEecCC-CcCCchh-hccCCCCCEEEccCC-ccccccc---ccCCCcc
Confidence 7777787777764555 5545555555 66666663 3444433 555566666666653 3444443 3334444
Q ss_pred cEEecCCC
Q 036876 216 RIQHIGHL 223 (234)
Q Consensus 216 ~~l~l~~c 223 (234)
+.+++++|
T Consensus 202 ~~L~l~~n 209 (347)
T 4fmz_A 202 HYFTAYVN 209 (347)
T ss_dssp CEEECCSS
T ss_pred ceeecccC
Confidence 44444333
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=132.00 Aligned_cols=156 Identities=14% Similarity=0.137 Sum_probs=120.7
Q ss_pred chhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCC--ccC-CCCccEEEecCCcccc-cc
Q 036876 55 PNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPS--NLS-AEKLVLLEVPGSSIEQ-LW 129 (234)
Q Consensus 55 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~--~~~-l~~L~~L~l~~~~l~~-l~ 129 (234)
+..+..+++|+.|++++|.+. .++..+..+ +|++|++++|.+...++ .+. +++|++|++++|++.. .|
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVI-------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEE-------EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT
T ss_pred cccccccCccCEEECCCCccc-------cccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch
Confidence 455667888888888888665 455556666 89999999988766543 455 8999999999998886 45
Q ss_pred ccccCCCCCcEEEcccCcccc--cCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCc
Q 036876 130 DGVKHYSKLNQIIHVACKKLI--AKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEI 206 (234)
Q Consensus 130 ~~~~~l~~L~~L~l~~~~~l~--~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~ 206 (234)
..+..+++|++|++++|. +. . +|. ++.+++| +.|++++|......|..++++++|++|++++| .+..+|+.
T Consensus 439 ~~~~~l~~L~~L~l~~n~-l~~~~-~p~~~~~l~~L---~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 512 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNS-FQENF-LPDIFTELRNL---TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDG 512 (570)
T ss_dssp TTTTTCTTCCEEECTTCE-EGGGE-ECSCCTTCTTC---CEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred hhhhcCCcCcEEECcCCc-Ccccc-chhhhhcccCC---CEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHH
Confidence 568889999999999998 54 5 776 7777777 99999996444334778899999999999995 56666653
Q ss_pred ccCCCCCCCcEEecCCCc
Q 036876 207 LSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 207 ~~~~~l~~L~~l~l~~c~ 224 (234)
. +..+++|+.+++++++
T Consensus 513 ~-~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 513 I-FDRLTSLQKIWLHTNP 529 (570)
T ss_dssp T-TTTCTTCCEEECCSSC
T ss_pred H-hhcccCCcEEEecCCc
Confidence 2 7889999999998743
No 64
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.61 E-value=8.3e-15 Score=132.85 Aligned_cols=162 Identities=16% Similarity=0.168 Sum_probs=79.9
Q ss_pred cCchhhCCCCCcceEEecCCCCCCCCccc--------------------ccccCCCCcc-EEEEEeeCCCCCCCCCCc-c
Q 036876 53 LNPNTFTKMPKLRFLKFYSSSFNGENKCK--------------------VSYLQDLGFV-EVKYLHWHGYPLKSLPSN-L 110 (234)
Q Consensus 53 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------------------~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~ 110 (234)
+.+..|..+++|+.|++++|.+.+..... -..|..+..+ +|++|++++|.+..+|+. +
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 33456677777777777777544210000 0233344444 555555555555554433 3
Q ss_pred C-CCCccEEEecCCccccccc---------cccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCc
Q 036876 111 S-AEKLVLLEVPGSSIEQLWD---------GVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKS 178 (234)
Q Consensus 111 ~-l~~L~~L~l~~~~l~~l~~---------~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~ 178 (234)
. +.+|++|++++|+++.++. .++.+++|++|++++|. ++. +|. |+++++| +.|++++ +.++.
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~-i~~~~~~~l~~L---~~L~Ls~-N~l~~ 574 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDE-IPVEVFKDLFEL---KIIDLGL-NNLNT 574 (680)
T ss_dssp TTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTC---CEEECCS-SCCCC
T ss_pred ccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCC-CCHHHcccccCc---ceeECCC-CCCCc
Confidence 3 5555555555555554321 13445555555555554 444 543 4444444 5555555 34444
Q ss_pred cccc-ccCCCCCCEEeccCCCCCCcCCCcccCC-CCCCCcEEecCC
Q 036876 179 LPAE-IFNLECLTELDLSDCSKLKRLPEILSGI-VNDALRIQHIGH 222 (234)
Q Consensus 179 lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~-~l~~L~~l~l~~ 222 (234)
+|.. +.++++|+++++++ +.+..+|+.. ++ .+++|+.+++++
T Consensus 575 l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQK-NLITSVEKKV-FGPAFRNLTELDMRF 618 (680)
T ss_dssp CCTTTTTTCTTCCEEECTT-SCCCBCCHHH-HHHHHTTCSEEECTT
T ss_pred CCHhHhCCCCCCCEEECCC-CcCCccChhH-hcccccccCEEEccC
Confidence 4432 44555555555555 3444444420 12 345555555554
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=1.2e-15 Score=126.16 Aligned_cols=170 Identities=16% Similarity=0.110 Sum_probs=99.5
Q ss_pred cceeeEEEecCCceeeecCchhh--CCCCCcceEEecCCCCCCCCcccccccCCCCc-----c-EEEEEeeCCCCCCCCC
Q 036876 36 KKIEGICLDMSKVKEICLNPNTF--TKMPKLRFLKFYSSSFNGENKCKVSYLQDLGF-----V-EVKYLHWHGYPLKSLP 107 (234)
Q Consensus 36 ~~i~~~~l~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-----l-~L~~L~l~~~~~~~lp 107 (234)
..++.+.+..+.+. +..+..+ ..+++|+.|++++|.+.+. |..+.. . +|++|++++|.+..++
T Consensus 95 ~~L~~L~L~~n~l~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 95 SGLQELTLENLEVT--GTAPPPLLEATGPDLNILNLRNVSWATR-------DAWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp SCCCEEEEEEEBCB--SCCCCCSSSCCSCCCSEEEEESCBCSSS-------SSHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred CCccEEEccCCccc--chhHHHHHHhcCCCccEEEccCCCCcch-------hHHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 44555544433332 2223333 7888889999998877742 322221 1 5777777777776666
Q ss_pred -CccC-CCCccEEEecCCcccc---ccccc--cCCCCCcEEEcccCcccccCCCC-----CCCCCCCCCccEEEecCCCC
Q 036876 108 -SNLS-AEKLVLLEVPGSSIEQ---LWDGV--KHYSKLNQIIHVACKKLIAKTPN-----PTLMPHLNKLVILILRGSKS 175 (234)
Q Consensus 108 -~~~~-l~~L~~L~l~~~~l~~---l~~~~--~~l~~L~~L~l~~~~~l~~~lp~-----~~~l~~L~~l~~L~l~~~~~ 175 (234)
..+. +++|++|++++|++.. +|..+ +.+++|++|++++|. ++. ++. +..+++| +.|++++| .
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~-~~~~~~~~~~~l~~L---~~L~Ls~N-~ 239 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-MET-PSGVCSALAAARVQL---QGLDLSHN-S 239 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCC-HHHHHHHHHHTTCCC---SEEECTTS-C
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-Ccc-hHHHHHHHHhcCCCC---CEEECCCC-c
Confidence 4455 7777777777777542 23333 667777777777776 543 221 2334455 77777764 3
Q ss_pred CCc-cc-ccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcC
Q 036876 176 LKS-LP-AEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLA 225 (234)
Q Consensus 176 l~~-lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~ 225 (234)
+.. .| ..+..+++|++|++++ +.+..+|.. +. ++|++|+++++.-
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~--~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKG--LP--AKLSVLDLSYNRL 286 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTT-SCCSSCCSS--CC--SEEEEEECCSSCC
T ss_pred CCcccchhhhhhcCCCCEEECCC-CccChhhhh--cc--CCceEEECCCCCC
Confidence 333 22 3345566677777776 345566665 33 6677777766643
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.61 E-value=1.6e-14 Score=129.30 Aligned_cols=169 Identities=18% Similarity=0.102 Sum_probs=84.4
Q ss_pred EecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCC---------------
Q 036876 43 LDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSL--------------- 106 (234)
Q Consensus 43 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~l--------------- 106 (234)
+++.......+.+..|..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+..+
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccC-------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 344444434455556777777777777777665 455555555 566666655554433
Q ss_pred ----------CCc-cC-CCCccEEEecCCccccc---cccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEe
Q 036876 107 ----------PSN-LS-AEKLVLLEVPGSSIEQL---WDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILIL 170 (234)
Q Consensus 107 ----------p~~-~~-l~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l 170 (234)
|.. +. +++|++|++++|++... +..++.+++|++|++++|. +....|. ++.+++| +.|++
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L---~~L~l 407 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQL---ELLDL 407 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTC---SEEEC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccC---CeEEC
Confidence 221 22 44555555555544433 3334555555555555554 3320232 4444444 55555
Q ss_pred cCCCCCCcccc-cccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 171 RGSKSLKSLPA-EIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 171 ~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
++|......|. .++++++|++|++++|......|.. ++.+++|+.|++++|.
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL--FDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT--TTTCTTCCEEECTTCB
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH--HhCCCCCCEEECCCCC
Confidence 55322222222 2455555555555554332333333 4555555555555553
No 67
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=124.85 Aligned_cols=86 Identities=9% Similarity=0.042 Sum_probs=42.0
Q ss_pred CCCCCcceEEecCCCCCCCCccccccc-CCCCcc-EEEEEeeCCCCCCCCCC-ccC-CCCccEEEecCCcccc---cccc
Q 036876 59 TKMPKLRFLKFYSSSFNGENKCKVSYL-QDLGFV-EVKYLHWHGYPLKSLPS-NLS-AEKLVLLEVPGSSIEQ---LWDG 131 (234)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l-~L~~L~l~~~~~~~lp~-~~~-l~~L~~L~l~~~~l~~---l~~~ 131 (234)
..+++|++|++++|.+.+.... ++ ..+..+ +|++|++++|.+..+++ .+. +++|++|++++|++.. ++..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~---~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 190 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSW---LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAA 190 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSS---HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTT
T ss_pred ccCCCCCEEEeecccccchhhh---hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHH
Confidence 5667777777777765531000 00 112233 56666666666554442 333 5566666666665432 2111
Q ss_pred --ccCCCCCcEEEcccCc
Q 036876 132 --VKHYSKLNQIIHVACK 147 (234)
Q Consensus 132 --~~~l~~L~~L~l~~~~ 147 (234)
++.+++|++|++++|.
T Consensus 191 ~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 191 LCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp SCTTSSCCCCSCBCCSSC
T ss_pred HhhhcCCCCCEEECCCCC
Confidence 2344455555555554
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=3.3e-15 Score=132.13 Aligned_cols=156 Identities=10% Similarity=0.058 Sum_probs=127.8
Q ss_pred CCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCC-CccC-CCCccEEEecCCcccccccc-ccCCCC
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLP-SNLS-AEKLVLLEVPGSSIEQLWDG-VKHYSK 137 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp-~~~~-l~~L~~L~l~~~~l~~l~~~-~~~l~~ 137 (234)
++|++|++++|.+.+ ..|..+..+ +|++|++++|.+..++ ..+. +.+|++|++++|+++.++.. ++++++
T Consensus 26 ~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNKITY------IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSCCCE------ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCccCc------cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 689999999998773 346778888 9999999999988776 4566 99999999999999988776 899999
Q ss_pred CcEEEcccCccccc-CCCC-CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccCCCCCCcCCCcccCCCCCC
Q 036876 138 LNQIIHVACKKLIA-KTPN-PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKLKRLPEILSGIVNDA 214 (234)
Q Consensus 138 L~~L~l~~~~~l~~-~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~ 214 (234)
|++|++++|. ++. .+|. ++.+++| +.|++++|..+..+| ..++++++|++|++++|...+..|.. ++.+++
T Consensus 100 L~~L~Ls~n~-l~~~~~~~~~~~l~~L---~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~ 173 (549)
T 2z81_A 100 LKYLNLMGNP-YQTLGVTSLFPNLTNL---QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS--LKSIRD 173 (549)
T ss_dssp CCEEECTTCC-CSSSCSSCSCTTCTTC---CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT--TTTCSE
T ss_pred CcEEECCCCc-ccccchhhhhhccCCc---cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh--hhcccc
Confidence 9999999998 664 0344 6677777 999999977688887 47999999999999997655557777 888888
Q ss_pred CcEEecCCCcCCChh
Q 036876 215 LRIQHIGHLLAVRWK 229 (234)
Q Consensus 215 L~~l~l~~c~~l~~~ 229 (234)
|+.++++++..-..|
T Consensus 174 L~~L~l~~n~~~~~~ 188 (549)
T 2z81_A 174 IHHLTLHLSESAFLL 188 (549)
T ss_dssp EEEEEEECSBSTTHH
T ss_pred CceEecccCcccccc
Confidence 888888776543333
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=127.96 Aligned_cols=89 Identities=16% Similarity=0.185 Sum_probs=48.0
Q ss_pred ecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCcccc--c
Q 036876 52 CLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQ--L 128 (234)
Q Consensus 52 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~--l 128 (234)
.+.+..|.++++|++|++++|.+.+ ..|..+..+ +|++|++++|.+..+|.. .+.+|++|++++|+++. +
T Consensus 35 ~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~ 107 (520)
T 2z7x_B 35 ELWTSDILSLSKLRILIISHNRIQY------LDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPI 107 (520)
T ss_dssp CCCHHHHTTCTTCCEEECCSSCCCE------EEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCC
T ss_pred ccChhhccccccccEEecCCCccCC------cChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccc
Confidence 3344556666666666666665542 224455555 566666666555555544 45555555555555553 3
Q ss_pred cccccCCCCCcEEEcccCc
Q 036876 129 WDGVKHYSKLNQIIHVACK 147 (234)
Q Consensus 129 ~~~~~~l~~L~~L~l~~~~ 147 (234)
|..++++++|++|++++|.
T Consensus 108 p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 108 CKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CGGGGGCTTCCEEEEEESS
T ss_pred hhhhccCCcceEEEecCcc
Confidence 3445555555555555443
No 70
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=127.49 Aligned_cols=152 Identities=19% Similarity=0.233 Sum_probs=123.8
Q ss_pred CCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCC---CccC-CCCccEEEecCCcccc-cccc-
Q 036876 59 TKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLP---SNLS-AEKLVLLEVPGSSIEQ-LWDG- 131 (234)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp---~~~~-l~~L~~L~l~~~~l~~-l~~~- 131 (234)
..+++|+.|++++|.+.+ ..|..+..+ +|++|++++|.+..++ ..+. +++|++|++++|++.. +|.+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD------TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECCSSCCCT------TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred hhCCcccEEEeECCccCh------hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 678899999999998774 467778888 9999999999987543 4455 8999999999999987 8776
Q ss_pred ccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCC
Q 036876 132 VKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGI 210 (234)
Q Consensus 132 ~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~ 210 (234)
+..+++|++|++++|..... +|. +. ++| +.|++++| .++.+|..+..+++|++|++++| .+..+|... +.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~-~~~~l~--~~L---~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~-~~ 465 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDT-IFRCLP--PRI---KVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGI-FD 465 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGG-GGGSCC--TTC---CEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTT-TT
T ss_pred hccCccCCEEECcCCCCCcc-hhhhhc--ccC---CEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHH-hc
Confidence 77889999999999983344 554 32 466 99999994 77799988889999999999994 778899842 67
Q ss_pred CCCCCcEEecCCCcC
Q 036876 211 VNDALRIQHIGHLLA 225 (234)
Q Consensus 211 ~l~~L~~l~l~~c~~ 225 (234)
.+++|+.+++++++-
T Consensus 466 ~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPW 480 (520)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred cCCcccEEECcCCCC
Confidence 899999999998764
No 71
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=8.7e-15 Score=113.83 Aligned_cols=123 Identities=22% Similarity=0.292 Sum_probs=78.6
Q ss_pred CCcceEEecCCCCCCCCccccccc-CCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCcccccccc-ccCCC
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYL-QDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIEQLWDG-VKHYS 136 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~~l~~~-~~~l~ 136 (234)
++|+.|++++|.+. .++ ..+..+ +|++|++++|.+..+|.. +. +.+|++|++++|+++.+|.. +..++
T Consensus 28 ~~l~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-------SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp TTCSEEECCSSCCC-------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEEcCCCccC-------cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence 46777777777665 233 234555 677777777776666654 34 67777777777777766554 46677
Q ss_pred CCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccCC
Q 036876 137 KLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDC 197 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c 197 (234)
+|++|++++|. ++. ++. ++.+++| +.|++++ +.+..+|. .+..+++|+++++++|
T Consensus 101 ~L~~L~L~~N~-l~~-~~~~~~~~l~~L---~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 101 QLKELALNTNQ-LQS-LPDGVFDKLTQL---KDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TCCEEECCSSC-CCC-CCTTTTTTCTTC---CEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCEEEcCCCc-Ccc-cCHhHhccCCcC---CEEECCC-CccceeCHHHhccCCCccEEEecCC
Confidence 77777777776 555 554 4555555 7777776 35555554 3566777777777764
No 72
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=8.5e-14 Score=108.19 Aligned_cols=144 Identities=24% Similarity=0.280 Sum_probs=113.8
Q ss_pred ceEEecCCCCCCCCcccccccCCCCccEEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCcccccccc-ccCCCCCcEE
Q 036876 65 RFLKFYSSSFNGENKCKVSYLQDLGFVEVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIEQLWDG-VKHYSKLNQI 141 (234)
Q Consensus 65 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L 141 (234)
+.++.+++.+. .+|..+.. ++++|+++++.+..++.. +. +.+|++|++++|+++.++.. +..+++|++|
T Consensus 10 ~~v~c~~~~l~-------~~p~~~~~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 10 TTVECYSQGRT-------SVPTGIPA-QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL 81 (208)
T ss_dssp TEEECCSSCCS-------SCCSCCCT-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCCCcc-------CCCCCCCC-CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence 34555555444 44433211 789999999999888865 45 89999999999999988776 5889999999
Q ss_pred EcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEE
Q 036876 142 IHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQ 218 (234)
Q Consensus 142 ~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l 218 (234)
++++|. ++. +|. ++.+++| +.|++++ +.+..+|. .++.+++|++|++++ +.+..+|... +..+++|+.+
T Consensus 82 ~Ls~n~-l~~-~~~~~~~~l~~L---~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~-~~~l~~L~~L 153 (208)
T 2o6s_A 82 NLSTNQ-LQS-LPNGVFDKLTQL---KELALNT-NQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGV-FDRLTSLQYI 153 (208)
T ss_dssp ECCSSC-CCC-CCTTTTTTCTTC---CEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTT-TTTCTTCCEE
T ss_pred ECCCCc-CCc-cCHhHhcCccCC---CEEEcCC-CcCcccCHhHhccCCcCCEEECCC-CccceeCHHH-hccCCCccEE
Confidence 999998 777 775 6677777 9999999 46777765 478999999999999 4677777752 6789999999
Q ss_pred ecCCCc
Q 036876 219 HIGHLL 224 (234)
Q Consensus 219 ~l~~c~ 224 (234)
++++++
T Consensus 154 ~l~~N~ 159 (208)
T 2o6s_A 154 WLHDNP 159 (208)
T ss_dssp ECCSCC
T ss_pred EecCCC
Confidence 999854
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.58 E-value=2.6e-14 Score=127.02 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=75.7
Q ss_pred EecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEec
Q 036876 43 LDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVP 121 (234)
Q Consensus 43 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~ 121 (234)
++++.+....+.+..|.++++|++|++++|.+.+ ..|..+..+ +|++|++++|.+..+|.. .+.+|++|+++
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls 129 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRS------LDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLS 129 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE------ECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCCc------CCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECC
Confidence 3444444445556788899999999999998773 346678888 899999999888888876 78888999998
Q ss_pred CCcccccc--ccccCCCCCcEEEcccCc
Q 036876 122 GSSIEQLW--DGVKHYSKLNQIIHVACK 147 (234)
Q Consensus 122 ~~~l~~l~--~~~~~l~~L~~L~l~~~~ 147 (234)
+|+++.++ ..++++++|++|++++|.
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCCccccCchHhhcccCcccEEecCCCc
Confidence 88888764 567888888888887775
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=4.2e-15 Score=122.84 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=99.5
Q ss_pred CCCCcceEEecCCCCCCCCcccccccCCC--Ccc-EEEEEeeCCCCCCCCCCccC-C-----CCccEEEecCCcccccc-
Q 036876 60 KMPKLRFLKFYSSSFNGENKCKVSYLQDL--GFV-EVKYLHWHGYPLKSLPSNLS-A-----EKLVLLEVPGSSIEQLW- 129 (234)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~l-~L~~L~l~~~~~~~lp~~~~-l-----~~L~~L~l~~~~l~~l~- 129 (234)
++++|++|++++|.+.+ ..|..+ ..+ +|++|++++|.+...|..+. + ++|++|++++|++..++
T Consensus 93 ~l~~L~~L~L~~n~l~~------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG------TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBS------CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT
T ss_pred CcCCccEEEccCCcccc------hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH
Confidence 57777888888777664 455554 556 77888888777776665543 4 77888888888777665
Q ss_pred ccccCCCCCcEEEcccCccccc-CCCC-C--CCCCCCCCccEEEecCCCCCCccc----ccccCCCCCCEEeccCCCCCC
Q 036876 130 DGVKHYSKLNQIIHVACKKLIA-KTPN-P--TLMPHLNKLVILILRGSKSLKSLP----AEIFNLECLTELDLSDCSKLK 201 (234)
Q Consensus 130 ~~~~~l~~L~~L~l~~~~~l~~-~lp~-~--~~l~~L~~l~~L~l~~~~~l~~lp----~~~~~l~~L~~L~l~~c~~l~ 201 (234)
..++.+++|++|++++|..... .+|. + +.+++| +.|++++| .+..++ ..+.++++|++|++++| .+.
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L---~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 241 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL---QVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLR 241 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC---CEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC---CEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCC
Confidence 5577777888888877763221 0121 2 455555 88888774 555333 22346677888888774 444
Q ss_pred cCC--CcccCCCCCCCcEEecCCCcCCChh
Q 036876 202 RLP--EILSGIVNDALRIQHIGHLLAVRWK 229 (234)
Q Consensus 202 ~lp--~~~~~~~l~~L~~l~l~~c~~l~~~ 229 (234)
..+ .. +..+++|++|++++|.--+.|
T Consensus 242 ~~~~~~~--~~~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 242 DAAGAPS--CDWPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp SSCCCSC--CCCCTTCCEEECTTSCCSSCC
T ss_pred cccchhh--hhhcCCCCEEECCCCccChhh
Confidence 433 22 455677888888777533333
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.58 E-value=8.3e-15 Score=129.96 Aligned_cols=166 Identities=18% Similarity=0.180 Sum_probs=116.0
Q ss_pred ecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCC-CccC-CCCccEEEe
Q 036876 44 DMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLP-SNLS-AEKLVLLEV 120 (234)
Q Consensus 44 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp-~~~~-l~~L~~L~l 120 (234)
+++......+.+..|.++++|++|++++|.+.+ ..+..+..+ +|++|++++|.+..++ ..+. +.+|++|++
T Consensus 34 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 34 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp ECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE------ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred EccCCccCccChhHhhCCCCceEEECCCCcCCc------cCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 444444344556678888888888888887662 234557777 8888888888877665 4455 888888888
Q ss_pred cCCccccccc-cccCCCCCcEEEcccCccccc-CCCC-CCCCCCCCCccEEEecCCCCCCcc-cccccCCCCC----CEE
Q 036876 121 PGSSIEQLWD-GVKHYSKLNQIIHVACKKLIA-KTPN-PTLMPHLNKLVILILRGSKSLKSL-PAEIFNLECL----TEL 192 (234)
Q Consensus 121 ~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~-~lp~-~~~l~~L~~l~~L~l~~~~~l~~l-p~~~~~l~~L----~~L 192 (234)
++|+++.++. .++.+++|++|++++|. ++. .+|. |+.+++| +.|++++| .+..+ |..++.+++| ..+
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L---~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNL---EHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTC---CEEECTTS-CCCEECGGGGHHHHTCTTCCCEE
T ss_pred cccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCC---CEEeCcCC-ccceecHHHccchhccchhhhhc
Confidence 8888887765 47888888888888887 543 1465 6667677 88888884 44444 3456666666 788
Q ss_pred eccCCCCCCcCCCcccCCCCCCCcEEecCCC
Q 036876 193 DLSDCSKLKRLPEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 193 ~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c 223 (234)
++++| .+..+++. .....+|+.++++++
T Consensus 183 ~l~~n-~l~~~~~~--~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 183 DLSLN-PMNFIQPG--AFKEIRLHKLTLRNN 210 (570)
T ss_dssp ECTTC-CCCEECTT--TTTTCEEEEEEEESC
T ss_pred ccCCC-CceecCHH--HhccCcceeEecccc
Confidence 88874 55666554 444447888888765
No 76
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.58 E-value=2.1e-14 Score=124.77 Aligned_cols=142 Identities=20% Similarity=0.133 Sum_probs=117.9
Q ss_pred hhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccC
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKH 134 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~ 134 (234)
.+..+++|++|++++|.+.+ +| +..+ +|++|++++|.+..++ +. +++|++|++++|+++.+| ++.
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~-------~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~ 125 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT-------LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQ 125 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC-------CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTT
T ss_pred hhcccCCCCEEEccCCcCCe-------Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCC
Confidence 68889999999999998773 33 6667 8999999999988875 55 899999999999999875 888
Q ss_pred CCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCC
Q 036876 135 YSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDA 214 (234)
Q Consensus 135 l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~ 214 (234)
+++|++|++++|. ++. ++ ++.+++| +.|++++|..+..++ ++.+++|++|++++ +.+..+| ++.+++
T Consensus 126 l~~L~~L~l~~N~-l~~-l~-l~~l~~L---~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~-n~l~~l~----l~~l~~ 192 (457)
T 3bz5_A 126 NPLLTYLNCARNT-LTE-ID-VSHNTQL---TELDCHLNKKITKLD--VTPQTQLTTLDCSF-NKITELD----VSQNKL 192 (457)
T ss_dssp CTTCCEEECTTSC-CSC-CC-CTTCTTC---CEEECTTCSCCCCCC--CTTCTTCCEEECCS-SCCCCCC----CTTCTT
T ss_pred CCcCCEEECCCCc-cce-ec-cccCCcC---CEEECCCCCcccccc--cccCCcCCEEECCC-Cccceec----cccCCC
Confidence 9999999999997 777 65 5666666 999999987777774 77889999999998 4677775 377899
Q ss_pred CcEEecCCCc
Q 036876 215 LRIQHIGHLL 224 (234)
Q Consensus 215 L~~l~l~~c~ 224 (234)
|+.+++++|.
T Consensus 193 L~~L~l~~N~ 202 (457)
T 3bz5_A 193 LNRLNCDTNN 202 (457)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECcCCc
Confidence 9999998774
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=122.72 Aligned_cols=153 Identities=15% Similarity=0.033 Sum_probs=113.3
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCC---CCC--ccC-CCCccEEEecCCccccccc
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKS---LPS--NLS-AEKLVLLEVPGSSIEQLWD 130 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~---lp~--~~~-l~~L~~L~l~~~~l~~l~~ 130 (234)
+..+++|+.|++++|.+.+ ..+..+..+ +|++|++++|.+.. ++. .+. +++|++|++++|+++.++.
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 214 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPA------FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG 214 (310)
T ss_dssp TTBCSCCCEEEEECCSSCC------CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred hhhccCCCEEEeeCCCcch------hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH
Confidence 3468899999999998763 344667777 89999999887543 222 123 7889999999998876655
Q ss_pred c----ccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCC
Q 036876 131 G----VKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPE 205 (234)
Q Consensus 131 ~----~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 205 (234)
. ++.+++|++|++++|. ++...|. ++.+..+++|+.|++++ +.++.+|..+. ++|++|++++ +.+..+|.
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~ 289 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQ 289 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCC
T ss_pred HHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCch
Confidence 3 4677899999999998 6661365 66664334459999988 56778887663 7899999998 56777777
Q ss_pred cccCCCCCCCcEEecCCCc
Q 036876 206 ILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 206 ~~~~~~l~~L~~l~l~~c~ 224 (234)
+..+++|+.|++++++
T Consensus 290 ---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 290 ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ---TTSCCCCSCEECSSTT
T ss_pred ---hhhCCCccEEECcCCC
Confidence 6788999999998875
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.57 E-value=9e-14 Score=120.83 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=114.9
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCC
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHY 135 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l 135 (234)
+..+++|++|++++|.+.+ ++ +..+ +|++|++++|.+..+| +. +++|++|++++|+++.++ ++.+
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~-------~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l 147 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN-------LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHN 147 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-------CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTC
T ss_pred cccCCCCCEEECcCCCCce-------ee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccC
Confidence 7788999999999998773 33 6667 8999999999988876 55 899999999999998874 7888
Q ss_pred CCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCC
Q 036876 136 SKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDAL 215 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L 215 (234)
++|++|++++|..++. ++ ++.+++| +.|++++ +.++.+| ++.+++|+.+++++| .+..+ + ++.+++|
T Consensus 148 ~~L~~L~l~~n~~~~~-~~-~~~l~~L---~~L~ls~-n~l~~l~--l~~l~~L~~L~l~~N-~l~~~-~---l~~l~~L 214 (457)
T 3bz5_A 148 TQLTELDCHLNKKITK-LD-VTPQTQL---TTLDCSF-NKITELD--VSQNKLLNRLNCDTN-NITKL-D---LNQNIQL 214 (457)
T ss_dssp TTCCEEECTTCSCCCC-CC-CTTCTTC---CEEECCS-SCCCCCC--CTTCTTCCEEECCSS-CCSCC-C---CTTCTTC
T ss_pred CcCCEEECCCCCcccc-cc-cccCCcC---CEEECCC-Cccceec--cccCCCCCEEECcCC-cCCee-c---cccCCCC
Confidence 9999999999975666 63 5566666 9999998 4677777 788899999999984 56666 3 6888999
Q ss_pred cEEecCCCcC
Q 036876 216 RIQHIGHLLA 225 (234)
Q Consensus 216 ~~l~l~~c~~ 225 (234)
+.|++++|.-
T Consensus 215 ~~L~Ls~N~l 224 (457)
T 3bz5_A 215 TFLDCSSNKL 224 (457)
T ss_dssp SEEECCSSCC
T ss_pred CEEECcCCcc
Confidence 9999988753
No 79
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=9.9e-15 Score=130.89 Aligned_cols=151 Identities=16% Similarity=0.177 Sum_probs=127.2
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCC
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHY 135 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l 135 (234)
+..+++|+.|++++|.+. .++ .+..+ +|+.|++++|.+..+++ +. +++|+.|++++|++..+| .+..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~-------~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l 108 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-------SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDL 108 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-------CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTC
T ss_pred hhcCCCCCEEECcCCCCC-------CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccC
Confidence 446788999999999765 343 57777 99999999999998887 55 999999999999999876 78999
Q ss_pred CCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCC
Q 036876 136 SKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDAL 215 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L 215 (234)
++|++|++++|. +.. ++.++.+++| +.|++++| .+..+ ..+..+++|+.|++++| .+..+++ +..+++|
T Consensus 109 ~~L~~L~Ls~N~-l~~-l~~l~~l~~L---~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L 177 (605)
T 1m9s_A 109 KKLKSLSLEHNG-ISD-INGLVHLPQL---ESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKL 177 (605)
T ss_dssp TTCCEEECTTSC-CCC-CGGGGGCTTC---SEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTTC
T ss_pred CCCCEEEecCCC-CCC-CccccCCCcc---CEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cCCCchh---hccCCCC
Confidence 999999999998 888 8777777777 99999995 66777 46889999999999985 6788877 7999999
Q ss_pred cEEecCCCcCCChh
Q 036876 216 RIQHIGHLLAVRWK 229 (234)
Q Consensus 216 ~~l~l~~c~~l~~~ 229 (234)
+.|++++|.--..|
T Consensus 178 ~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 178 QNLYLSKNHISDLR 191 (605)
T ss_dssp CEEECCSSCCCBCG
T ss_pred CEEECcCCCCCCCh
Confidence 99999998543333
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.57 E-value=2.3e-14 Score=129.88 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=117.2
Q ss_pred ceeeEEEecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CC
Q 036876 37 KIEGICLDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AE 113 (234)
Q Consensus 37 ~i~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~ 113 (234)
.++.+ +++......+.+..|.++++|++|++++|.+.+ ..|..+..+ +|++|++++|.+..+|+. +. +.
T Consensus 26 ~l~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 26 NITVL--NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp TCSEE--ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC------CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCcEE--ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc------cCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 34444 444443344556678889999999999987764 345556677 899999999988888864 65 89
Q ss_pred CccEEEecCCcccccc-ccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccc-cc--cCCCC
Q 036876 114 KLVLLEVPGSSIEQLW-DGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPA-EI--FNLEC 188 (234)
Q Consensus 114 ~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~-~~--~~l~~ 188 (234)
+|++|++++|++..++ ..++++++|++|++++|. ++...|. ++.+++| +.|++++| .+..++. .+ ..+++
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L---~~L~L~~n-~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENL---QELLLSNN-KIQALKSEELDIFANSS 172 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTC---CEEECCSS-CCCCBCHHHHGGGTTCE
T ss_pred CCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccC---CEEEccCC-cccccCHHHhhcccccc
Confidence 9999999999988876 458889999999999987 5551344 6666666 99999885 5555543 33 35678
Q ss_pred CCEEeccCCCCCCcCCCcccCCCCCCCcEEec
Q 036876 189 LTELDLSDCSKLKRLPEILSGIVNDALRIQHI 220 (234)
Q Consensus 189 L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l 220 (234)
|++|++++| .+..+++.. +..+++|+.+++
T Consensus 173 L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l 202 (680)
T 1ziw_A 173 LKKLELSSN-QIKEFSPGC-FHAIGRLFGLFL 202 (680)
T ss_dssp ESEEECTTC-CCCCBCTTG-GGGSSEECEEEC
T ss_pred ccEEECCCC-cccccChhh-hhhhhhhhhhhc
Confidence 999999985 455544421 444444433333
No 81
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.3e-14 Score=108.99 Aligned_cols=131 Identities=23% Similarity=0.125 Sum_probs=79.5
Q ss_pred CCCcceEEecCCCCC-CCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCcccc-ccccccCCC
Q 036876 61 MPKLRFLKFYSSSFN-GENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQ-LWDGVKHYS 136 (234)
Q Consensus 61 l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~-l~~~~~~l~ 136 (234)
.++|+.|++++|.+. + .+|..+..+ +|++|++++|.+..+ ..+. +++|++|++++|++.. +|..++.++
T Consensus 23 ~~~L~~L~l~~n~l~~~------~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDG------KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCBCBTT------BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCCCChh------hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 467888888887654 2 455555555 677777777766655 3444 6667777777776665 444455566
Q ss_pred CCcEEEcccCcccccCCC--C-CCCCCCCCCccEEEecCCCCCCcccc----cccCCCCCCEEeccCCCCCCcCCC
Q 036876 137 KLNQIIHVACKKLIAKTP--N-PTLMPHLNKLVILILRGSKSLKSLPA----EIFNLECLTELDLSDCSKLKRLPE 205 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp--~-~~~l~~L~~l~~L~l~~~~~l~~lp~----~~~~l~~L~~L~l~~c~~l~~lp~ 205 (234)
+|++|++++|. ++. +| . ++.+++| +.|++++| .+..+|. .+..+++|++|++++| ....+|.
T Consensus 96 ~L~~L~Ls~N~-l~~-~~~~~~l~~l~~L---~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 96 NLTHLNLSGNK-LKD-ISTLEPLKKLECL---KSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp TCCEEECBSSS-CCS-SGGGGGGSSCSCC---CEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CCCEEeccCCc-cCc-chhHHHHhcCCCC---CEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 67777776665 555 54 2 4444444 66666663 4444443 4666666666666663 3445554
No 82
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=2.1e-14 Score=133.53 Aligned_cols=173 Identities=12% Similarity=0.087 Sum_probs=121.6
Q ss_pred cceeeEEEecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccc-cCCCCcc-EEEEEeeCCCCCCCC-CCccC-
Q 036876 36 KKIEGICLDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSY-LQDLGFV-EVKYLHWHGYPLKSL-PSNLS- 111 (234)
Q Consensus 36 ~~i~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~l-~L~~L~l~~~~~~~l-p~~~~- 111 (234)
..++.+.+..+.+ ..+.+..|.++++|++|++++|...+ .+ |..+..+ +|++|++++|.+..+ |..+.
T Consensus 24 ~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~------~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 24 NTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPL------TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp TTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCC------EECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCcc------ccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 3445444444333 34456678888888888888885432 44 5667888 888888888887766 55666
Q ss_pred CCCccEEEecCCcccc-cccc--ccCCCCCcEEEcccCcccccCC-C-C-CCCCCCCCCccEEEecCCCCCCcccccccC
Q 036876 112 AEKLVLLEVPGSSIEQ-LWDG--VKHYSKLNQIIHVACKKLIAKT-P-N-PTLMPHLNKLVILILRGSKSLKSLPAEIFN 185 (234)
Q Consensus 112 l~~L~~L~l~~~~l~~-l~~~--~~~l~~L~~L~l~~~~~l~~~l-p-~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~ 185 (234)
+.+|++|++++|++.. +|.. ++++++|++|++++|. ++. + + . |+.+++| +.|++++|......|..++.
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~-~~~~~~~~~L~~L---~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRS-LYLHPSFGKLNSL---KSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCC-CCCCGGGGTCSSC---CEEEEESSCCCCCCSGGGHH
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccc-cccchhHhhCCCC---CEEECCCCcCCeeCHHHccc
Confidence 8888888888888875 4444 7888888888888887 554 4 2 2 6666666 88888885444445556666
Q ss_pred C--CCCCEEeccCCCCCCcCCCcccCCCCCC------CcEEecCCC
Q 036876 186 L--ECLTELDLSDCSKLKRLPEILSGIVNDA------LRIQHIGHL 223 (234)
Q Consensus 186 l--~~L~~L~l~~c~~l~~lp~~~~~~~l~~------L~~l~l~~c 223 (234)
+ ++|+.+++++|......|.. ++.+++ |+.|++++|
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~--~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVD--WGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCC--CCSSSCTTTTCCBSEEBCSSC
T ss_pred ccCCccceEECCCCccccccccc--hhhcCCccccCceeEEecCCC
Confidence 5 77888888887666666665 555554 899999887
No 83
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=4.9e-14 Score=125.40 Aligned_cols=116 Identities=17% Similarity=0.126 Sum_probs=80.3
Q ss_pred EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEec
Q 036876 92 EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILR 171 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~ 171 (234)
+|++|++++|.+..+|. .+++|+.|++++|+++.+|. .+++|++|++++|. ++. +|.|+ .+| +.|+++
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~-lp~l~--~~L---~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTF-LPELP--ESL---EALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSC-CCCCC--TTC---CEEECC
T ss_pred CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCC-cchhh--CCC---CEEECc
Confidence 55666666666666655 45667777777777766665 45677777777776 666 76633 455 888888
Q ss_pred CCCCCCcccccccCCCCC-------CEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCC
Q 036876 172 GSKSLKSLPAEIFNLECL-------TELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 172 ~~~~l~~lp~~~~~l~~L-------~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l 226 (234)
+ +.++.+|. +.. +| +.|++++ +.+..+|.. ++.+++|+.|++++++--
T Consensus 189 ~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~--l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 189 T-NLLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPEN--ILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp S-SCCSSCCC-CC----------CCEEEECCS-SCCCCCCGG--GGGSCTTEEEECCSSSCC
T ss_pred C-CCCCchhh-HHH--hhhcccccceEEecCC-CcceecCHH--HhcCCCCCEEEeeCCcCC
Confidence 7 46777776 543 66 8888887 577888887 777899999999888654
No 84
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=6.1e-14 Score=110.89 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=108.4
Q ss_pred CCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCcccccccc-ccCCCC
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIEQLWDG-VKHYSK 137 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~~l~~~-~~~l~~ 137 (234)
++|+.|++++|.+.+ ..|..+..+ +|++|++++|.+..+|.. +. +++|++|++++|+++.++.. +..+++
T Consensus 40 ~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQITK------LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCCccCc------cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 789999999998874 446678888 999999999999998865 45 89999999999999998776 688999
Q ss_pred CcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccCCCCC
Q 036876 138 LNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKL 200 (234)
Q Consensus 138 L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l 200 (234)
|++|++++|. ++. +|. +..+++| +.|++++ +.+..+| ..+..+++|+.+++++++..
T Consensus 114 L~~L~Ls~N~-l~~-lp~~~~~l~~L---~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 114 LKELFMCCNK-LTE-LPRGIERLTHL---THLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCEEECCSSC-CCS-CCTTGGGCTTC---SEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred hCeEeccCCc-ccc-cCcccccCCCC---CEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999999998 888 987 7777777 9999999 5777777 45888999999999996433
No 85
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=6.6e-14 Score=124.43 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=122.2
Q ss_pred CCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCC---CccC-CCCccEEEecCCcccc-cccc-
Q 036876 59 TKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLP---SNLS-AEKLVLLEVPGSSIEQ-LWDG- 131 (234)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp---~~~~-l~~L~~L~l~~~~l~~-l~~~- 131 (234)
..+++|+.|++++|.+.+ ..|..+..+ +|++|++++|.+..++ ..+. +++|++|++++|++.. +|.+
T Consensus 350 ~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTD------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECCSSCCCT------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred cCCCCceEEECCCCcccc------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 577889999999998774 467778888 8999999999888765 3355 8899999999999987 7765
Q ss_pred ccCCCCCcEEEcccCcccccCCCCCCCC-CCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCC
Q 036876 132 VKHYSKLNQIIHVACKKLIAKTPNPTLM-PHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGI 210 (234)
Q Consensus 132 ~~~l~~L~~L~l~~~~~l~~~lp~~~~l-~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~ 210 (234)
+..+++|++|++++|..... +|. .+ ++| +.|++++| .++.+|..+.++++|++|++++ +.+..+|..+ +.
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~-~~~--~l~~~L---~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~-~~ 494 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGS-VFR--CLPPKV---KVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLKSVPDGV-FD 494 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGG-GGS--SCCTTC---SEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTS-TT
T ss_pred hcCcccCCEEECCCCCCCcc-hhh--hhcCcC---CEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCCCCCHHH-Hh
Confidence 67789999999999983234 554 23 466 99999984 7888998888999999999998 5778899853 67
Q ss_pred CCCCCcEEecCCCcC
Q 036876 211 VNDALRIQHIGHLLA 225 (234)
Q Consensus 211 ~l~~L~~l~l~~c~~ 225 (234)
.+++|+.+++++++-
T Consensus 495 ~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 495 RLTSLQYIWLHDNPW 509 (562)
T ss_dssp TCTTCCCEECCSCCB
T ss_pred cCCCCCEEEecCCCc
Confidence 899999999998753
No 86
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=5.1e-15 Score=111.32 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=111.4
Q ss_pred EEEEEeeCCCCCC--CCCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccE
Q 036876 92 EVKYLHWHGYPLK--SLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVI 167 (234)
Q Consensus 92 ~L~~L~l~~~~~~--~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~ 167 (234)
++++|++++|.+. .+|..+. +++|++|++++|.++.+ ..+..+++|++|++++|. ++..+|. ++.+++| +.
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L---~~ 99 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNL---TH 99 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTC---CE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCC---CE
Confidence 6899999999987 8888776 99999999999999988 788999999999999998 5541555 5557777 99
Q ss_pred EEecCCCCCCccc--ccccCCCCCCEEeccCCCCCCcCCC----cccCCCCCCCcEEecCCCcCCChhhh
Q 036876 168 LILRGSKSLKSLP--AEIFNLECLTELDLSDCSKLKRLPE----ILSGIVNDALRIQHIGHLLAVRWKEM 231 (234)
Q Consensus 168 L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~l~~L~~l~l~~c~~l~~~~~ 231 (234)
|++++| .++.+| ..++.+++|++|++++| .+..+|. . +..+++|+.|++++|..-+.|+.
T Consensus 100 L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 100 LNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESV--FKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHH--HTTCSSCCEETTEETTSCBCCSS
T ss_pred EeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHH--HHhCccCcEecCCCCChhhcccc
Confidence 999995 777776 67899999999999995 6777887 5 88999999999999988776654
No 87
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.55 E-value=5.7e-14 Score=122.15 Aligned_cols=123 Identities=14% Similarity=0.113 Sum_probs=61.9
Q ss_pred EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEec
Q 036876 92 EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILR 171 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~ 171 (234)
+|++|++++|.+..+++...+++|++|++++|++..++. +..+++|++|++++|. ++. ++.++.+++| +.|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~-~~~~~~l~~L---~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LED-ISPISNLKNL---TYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSC-CGGGGGCTTC---SEEECC
T ss_pred CCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccC-chhhcCCCCC---CEEECc
Confidence 455555555555444431125555555555555555443 4555555555555554 444 4434444444 555555
Q ss_pred CCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCC
Q 036876 172 GSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 172 ~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l 226 (234)
+| .+..++. +..+++|+.|++++| .+..++. +..+++|+.|++++|.--
T Consensus 318 ~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 318 FN-NISDISP-VSSLTKLQRLFFYNN-KVSDVSS---LANLTNINWLSAGHNQIS 366 (466)
T ss_dssp SS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSCCC
T ss_pred CC-cCCCchh-hccCccCCEeECCCC-ccCCchh---hccCCCCCEEeCCCCccC
Confidence 53 3333332 445555555555553 3444443 555555555555555433
No 88
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.2e-13 Score=106.45 Aligned_cols=120 Identities=23% Similarity=0.245 Sum_probs=74.9
Q ss_pred EEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecC
Q 036876 95 YLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRG 172 (234)
Q Consensus 95 ~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~ 172 (234)
+++++++.+..+|..+ ..++++|++++|+++.+|..+..+++|++|++++|. ++. ++. |..+++| +.|++++
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~-i~~~~f~~l~~L---~~L~Ls~ 87 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-IST-LSNQSFSNMTQL---LTLILSY 87 (193)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCC-CCTTTTTTCTTC---CEEECCS
T ss_pred EEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCE-eCHhHccCCCCC---CEEECCC
Confidence 4555666666666433 356677777777777666666667777777777766 555 543 5555555 7777776
Q ss_pred CCCCCccc-ccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCC
Q 036876 173 SKSLKSLP-AEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 173 ~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c 223 (234)
+.+..++ ..+.++++|++|++++ +.+..+|... +..+++|+.++++++
T Consensus 88 -N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 -NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGA-FNDLSALSHLAIGAN 136 (193)
T ss_dssp -SCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTT-TTTCTTCCEEECCSS
T ss_pred -CccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhh-hhcCccccEEEeCCC
Confidence 3455544 3466677777777776 4566666532 556677777777654
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=6.2e-15 Score=119.09 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=120.0
Q ss_pred CCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCC
Q 036876 61 MPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKL 138 (234)
Q Consensus 61 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L 138 (234)
+.++..++++++.+. .++ .+..+ +|++|+++++.+..++ .+. +++|++|++++|+++.++. +..+++|
T Consensus 18 l~~l~~l~l~~~~i~-------~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L 87 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-------DLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHTCSCTT-------SEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSC
T ss_pred HHHHHHHHhcCCCcc-------ccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCC
Confidence 445666777777655 344 45566 8999999999999988 455 9999999999999999887 8999999
Q ss_pred cEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEE
Q 036876 139 NQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQ 218 (234)
Q Consensus 139 ~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l 218 (234)
++|++++|. ++. +|.+.. .+| +.|++++ +.++.++ .++.+++|++|++++ +.++.+|. ++.+++|+.|
T Consensus 88 ~~L~L~~N~-l~~-l~~~~~-~~L---~~L~L~~-N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~---l~~l~~L~~L 155 (263)
T 1xeu_A 88 EELSVNRNR-LKN-LNGIPS-ACL---SRLFLDN-NELRDTD-SLIHLKNLEILSIRN-NKLKSIVM---LGFLSKLEVL 155 (263)
T ss_dssp CEEECCSSC-CSC-CTTCCC-SSC---CEEECCS-SCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG---GGGCTTCCEE
T ss_pred CEEECCCCc-cCC-cCcccc-Ccc---cEEEccC-CccCCCh-hhcCcccccEEECCC-CcCCCChH---HccCCCCCEE
Confidence 999999998 888 887444 666 9999999 4777776 488999999999998 57888886 8999999999
Q ss_pred ecCCCcCC
Q 036876 219 HIGHLLAV 226 (234)
Q Consensus 219 ~l~~c~~l 226 (234)
++++|.--
T Consensus 156 ~L~~N~i~ 163 (263)
T 1xeu_A 156 DLHGNEIT 163 (263)
T ss_dssp ECTTSCCC
T ss_pred ECCCCcCc
Confidence 99988543
No 90
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.54 E-value=5.5e-14 Score=122.24 Aligned_cols=154 Identities=10% Similarity=0.106 Sum_probs=123.2
Q ss_pred hhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccC
Q 036876 56 NTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKH 134 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~ 134 (234)
+.+..+++|+.|++++|.+.+ .+. +..+ +|++|++++|.+..+++...+++|+.|++++|++..++. ++.
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~-------~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~ 307 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISN-------LAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISN 307 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCC-------CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGG
T ss_pred hhhhcCCCCCEEECCCCcccc-------chh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh-hcC
Confidence 346667777788887776653 222 5666 899999999999888773349999999999999998765 788
Q ss_pred CCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCC
Q 036876 135 YSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDA 214 (234)
Q Consensus 135 l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~ 214 (234)
+++|++|++++|. ++. ++.++.+++| +.|++++| .+..++ .+..+++|+.|++++| .+..+++ +..+++
T Consensus 308 l~~L~~L~L~~n~-l~~-~~~~~~l~~L---~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~ 376 (466)
T 1o6v_A 308 LKNLTYLTLYFNN-ISD-ISPVSSLTKL---QRLFFYNN-KVSDVS-SLANLTNINWLSAGHN-QISDLTP---LANLTR 376 (466)
T ss_dssp CTTCSEEECCSSC-CSC-CGGGGGCTTC---CEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGG---GTTCTT
T ss_pred CCCCCEEECcCCc-CCC-chhhccCccC---CEeECCCC-ccCCch-hhccCCCCCEEeCCCC-ccCccch---hhcCCC
Confidence 9999999999998 776 6656666666 99999995 666665 5889999999999985 5677777 789999
Q ss_pred CcEEecCCCcCCChh
Q 036876 215 LRIQHIGHLLAVRWK 229 (234)
Q Consensus 215 L~~l~l~~c~~l~~~ 229 (234)
|+.+++++|.-..+|
T Consensus 377 L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 377 ITQLGLNDQAWTNAP 391 (466)
T ss_dssp CCEEECCCEEEECCC
T ss_pred CCEEeccCCcccCCc
Confidence 999999998654443
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=1.1e-13 Score=108.72 Aligned_cols=124 Identities=13% Similarity=0.185 Sum_probs=100.4
Q ss_pred CCcceEEecCCCCCCCCccccccc-CCCCcc-EEEEEeeCCCCCCCC-CCccC-CCCccEEEecCCcccccccc-ccCCC
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYL-QDLGFV-EVKYLHWHGYPLKSL-PSNLS-AEKLVLLEVPGSSIEQLWDG-VKHYS 136 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l-~L~~L~l~~~~~~~l-p~~~~-l~~L~~L~l~~~~l~~l~~~-~~~l~ 136 (234)
++++.|++++|.+. .++ ..+..+ +|++|++++|.+..+ |..+. +++|++|++++|+++.+|.. +..++
T Consensus 32 ~~l~~L~l~~n~i~-------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNTIK-------VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCSSCCC-------EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCEEECCCCcCC-------CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence 57899999999877 444 467777 899999999998776 55666 89999999999999988876 57899
Q ss_pred CCcEEEcccCcccccCCC-C-CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccCCC
Q 036876 137 KLNQIIHVACKKLIAKTP-N-PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDCS 198 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp-~-~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~ 198 (234)
+|++|++++|. ++. ++ . |+.+++| +.|++++ +.+..++. .+..+++|+++++++++
T Consensus 105 ~L~~L~L~~N~-l~~-~~~~~~~~l~~L---~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 105 SLQLLLLNANK-INC-LRVDAFQDLHNL---NLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSC-CCC-CCTTTTTTCTTC---CEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCC-CCE-eCHHHcCCCCCC---CEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 99999999998 776 64 4 7777777 9999998 56666664 58888999999999853
No 92
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=2e-14 Score=121.20 Aligned_cols=148 Identities=18% Similarity=0.143 Sum_probs=112.2
Q ss_pred CCcceEEecCCCCCCCCcccccccC-CCC-cc-EEEEEeeCCCCCCCCCC-ccC-CCCccEEEecCCcccccccc-ccCC
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYLQ-DLG-FV-EVKYLHWHGYPLKSLPS-NLS-AEKLVLLEVPGSSIEQLWDG-VKHY 135 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~-~l~-~l-~L~~L~l~~~~~~~lp~-~~~-l~~L~~L~l~~~~l~~l~~~-~~~l 135 (234)
++++.|++++|.+. .++. .+. .+ +|++|++++|.+..+++ .+. +++|++|++++|+++.++.. +..+
T Consensus 39 ~~l~~L~Ls~N~l~-------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 111 (361)
T 2xot_A 39 SYTALLDLSHNNLS-------RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111 (361)
T ss_dssp TTCSEEECCSSCCC-------EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCEEECCCCCCC-------ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC
Confidence 35889999999877 4443 354 66 89999999999888775 455 88999999999999988664 7889
Q ss_pred CCCcEEEcccCcccccCC-CC-CCCCCCCCCccEEEecCCCCCCcccccc----cCCCCCCEEeccCCCCCCcCCCcccC
Q 036876 136 SKLNQIIHVACKKLIAKT-PN-PTLMPHLNKLVILILRGSKSLKSLPAEI----FNLECLTELDLSDCSKLKRLPEILSG 209 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~l-p~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~----~~l~~L~~L~l~~c~~l~~lp~~~~~ 209 (234)
.+|++|++++|. ++. + |. |..+++| +.|++++ +.+..+|... ..+++|++|++++ +.+..+|... +
T Consensus 112 ~~L~~L~L~~N~-i~~-~~~~~~~~l~~L---~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~-~ 183 (361)
T 2xot_A 112 QALEVLLLYNNH-IVV-VDRNAFEDMAQL---QKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTD-L 183 (361)
T ss_dssp TTCCEEECCSSC-CCE-ECTTTTTTCTTC---CEEECCS-SCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHH-H
T ss_pred cCCCEEECCCCc-ccE-ECHHHhCCcccC---CEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHH-h
Confidence 999999999998 666 5 44 7777777 9999998 5777788653 5688999999998 5778887531 4
Q ss_pred CCCCC--CcEEecCCCc
Q 036876 210 IVNDA--LRIQHIGHLL 224 (234)
Q Consensus 210 ~~l~~--L~~l~l~~c~ 224 (234)
..++. ++.+++++++
T Consensus 184 ~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 184 QKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHSCHHHHTTEECCSSC
T ss_pred hhccHhhcceEEecCCC
Confidence 55555 3778887743
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=3.7e-14 Score=109.49 Aligned_cols=131 Identities=13% Similarity=0.111 Sum_probs=107.9
Q ss_pred Ccc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCc
Q 036876 89 GFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKL 165 (234)
Q Consensus 89 ~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l 165 (234)
..+ ++++|+++++.+..+| .+. +++|++|++++|.+..++ .+..+++|++|++++|. ++...+. ++.+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L--- 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSL--- 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTC---
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc-cCcccChhhcCCCCC---
Confidence 344 8999999999999888 455 999999999999887764 78889999999999998 5431454 7777777
Q ss_pred cEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCCCh
Q 036876 166 VILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAVRW 228 (234)
Q Consensus 166 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l~~ 228 (234)
+.|++++|......|..++.+++|++|++++|..++.+|. +..+++|+.|++++|.--..
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~---l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP---LKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG---GGGCSSCCEEECTTBCCCCC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh---hcCCCCCCEEECCCCCCcCh
Confidence 9999999654445677799999999999999766899986 89999999999999864333
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=4.2e-14 Score=126.49 Aligned_cols=129 Identities=21% Similarity=0.233 Sum_probs=95.6
Q ss_pred CcceEEecCCCCCCCCccccccc-CCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCcccccccc-ccCCCC
Q 036876 63 KLRFLKFYSSSFNGENKCKVSYL-QDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIEQLWDG-VKHYSK 137 (234)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~~l~~~-~~~l~~ 137 (234)
+++.|++++|.++ .+| ..+..+ +|++|++++|.+..+|+. |. +++|++|++++|+++.+|.+ +.++++
T Consensus 53 ~~~~LdLs~N~i~-------~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNPLR-------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSCCC-------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCCCCC-------CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 6888888888776 454 467777 888888888888777653 55 88888888888888887765 678888
Q ss_pred CcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCc--ccccccCCCCCCEEeccCCCCCCcCCC
Q 036876 138 LNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKS--LPAEIFNLECLTELDLSDCSKLKRLPE 205 (234)
Q Consensus 138 L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~lp~ 205 (234)
|++|++++|. ++. +|. |+.+++| +.|++++| .+.. +|..++.+++|++|++++| .+..+++
T Consensus 126 L~~L~Ls~N~-l~~-l~~~~~~~L~~L---~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 190 (635)
T 4g8a_A 126 LQKLVAVETN-LAS-LENFPIGHLKTL---KELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC 190 (635)
T ss_dssp CCEEECTTSC-CCC-STTCCCTTCTTC---CEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG
T ss_pred CCEEECCCCc-CCC-CChhhhhcCccc---CeeccccC-ccccCCCchhhccchhhhhhcccCc-ccccccc
Confidence 8888888887 777 765 6666666 88888884 4443 4566777888888888874 4554443
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=1.4e-13 Score=115.95 Aligned_cols=150 Identities=14% Similarity=0.089 Sum_probs=119.6
Q ss_pred cceEEecCCCCCCCCcccccccCCCCccEEEEEeeCCCCCCCCCCcc---CCCCccEEEecCCccccccc-cccCCCCCc
Q 036876 64 LRFLKFYSSSFNGENKCKVSYLQDLGFVEVKYLHWHGYPLKSLPSNL---SAEKLVLLEVPGSSIEQLWD-GVKHYSKLN 139 (234)
Q Consensus 64 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~L~~L~l~~~~~~~lp~~~---~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~ 139 (234)
-+.++.+++.+. .+|..+.. .++.|++++|.+..++... .+.+|++|++++|+++.++. .+..+++|+
T Consensus 20 ~~~l~c~~~~l~-------~iP~~~~~-~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 20 SNILSCSKQQLP-------NVPQSLPS-YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TTEEECCSSCCS-------SCCSSCCT-TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCEEEeCCCCcC-------ccCccCCC-CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 357888888766 56654322 5888999999998887653 58999999999999998875 589999999
Q ss_pred EEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcc-cccccCCCCCCEEeccCCCCCCcCCCcccC---CCCC
Q 036876 140 QIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSL-PAEIFNLECLTELDLSDCSKLKRLPEILSG---IVND 213 (234)
Q Consensus 140 ~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~---~~l~ 213 (234)
+|++++|. ++. ++. |..+.+| +.|++++| .+..+ |..+.++++|++|++++ +.+..+|..+ + ..++
T Consensus 92 ~L~Ls~N~-l~~-~~~~~~~~l~~L---~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~-~~~~~~l~ 163 (361)
T 2xot_A 92 YLDLSSNH-LHT-LDEFLFSDLQAL---EVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVEL-IKDGNKLP 163 (361)
T ss_dssp EEECCSSC-CCE-ECTTTTTTCTTC---CEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGG-TC----CT
T ss_pred EEECCCCc-CCc-CCHHHhCCCcCC---CEEECCCC-cccEECHHHhCCcccCCEEECCC-CcCCeeCHHH-hcCcccCC
Confidence 99999998 777 765 7777777 99999994 66665 56799999999999998 6788899862 2 5799
Q ss_pred CCcEEecCCCcCCChh
Q 036876 214 ALRIQHIGHLLAVRWK 229 (234)
Q Consensus 214 ~L~~l~l~~c~~l~~~ 229 (234)
+|+.|+++++.--..|
T Consensus 164 ~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 164 KLMLLDLSSNKLKKLP 179 (361)
T ss_dssp TCCEEECCSSCCCCCC
T ss_pred cCCEEECCCCCCCccC
Confidence 9999999998654443
No 96
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=5.7e-14 Score=125.67 Aligned_cols=166 Identities=19% Similarity=0.187 Sum_probs=105.9
Q ss_pred EecCCceeeecCchhhCCCCCcceEEecCCCCCCCCccccccc-CCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEE
Q 036876 43 LDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYL-QDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLL 118 (234)
Q Consensus 43 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L 118 (234)
+|++.+.-..+.+..|.++++|++|++++|.++ .++ ..+..+ +|++|++++|.+..+|+. |. +.+|++|
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-------~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-------EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-------CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 344444434555667778888888888888766 443 356777 788888888877777654 45 7788888
Q ss_pred EecCCcccccccc-ccCCCCCcEEEcccCccccc-CCCC-CCCCCCCCCccEEEecCCCCCCccc-ccccCCCC----CC
Q 036876 119 EVPGSSIEQLWDG-VKHYSKLNQIIHVACKKLIA-KTPN-PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLEC----LT 190 (234)
Q Consensus 119 ~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~-~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~----L~ 190 (234)
++++|+++.+|.. ++++++|++|++++|. ++. .+|. ++.+++| +.|++++| .+..++ ..++.+++ ..
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L---~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNL---EHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTC---CEEECCSS-CCCEECGGGGHHHHTCTTCCC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhh---hhhcccCc-cccccccccccchhhhhhhhh
Confidence 8888887777654 6777888888888776 543 0344 5556666 88888774 455443 33443332 23
Q ss_pred EEeccCCCCCCcCCCcccCCCCCCCcEEecCCC
Q 036876 191 ELDLSDCSKLKRLPEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 191 ~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c 223 (234)
.++++. +.+..++.. ......+..+++.+.
T Consensus 205 ~~~ls~-n~l~~i~~~--~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 205 SLDLSL-NPMNFIQPG--AFKEIRLHKLTLRNN 234 (635)
T ss_dssp EEECTT-CCCCEECTT--TTTTCEEEEEEEESC
T ss_pred hhhccc-CcccccCcc--cccchhhhhhhhhcc
Confidence 566665 456666665 455555566665543
No 97
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=4.2e-14 Score=129.47 Aligned_cols=123 Identities=16% Similarity=0.024 Sum_probs=82.8
Q ss_pred EEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecC
Q 036876 95 YLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRG 172 (234)
Q Consensus 95 ~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~ 172 (234)
.+++..+.+...+..+. +..|+.|++++|++..+|..+..+.+|++|+|++|. ++. +|. |+.+.+| +.|++++
T Consensus 205 ~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~-lp~~~~~l~~L---~~L~Ls~ 279 (727)
T 4b8c_D 205 EDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTE-LPAEIKNLSNL---RVLDLSH 279 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSC-CCGGGGGGTTC---CEEECTT
T ss_pred CccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-Ccc-cChhhhCCCCC---CEEeCcC
Confidence 33344444444445555 778888888888888888777788888888888886 667 777 7677666 8888887
Q ss_pred CCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCC
Q 036876 173 SKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 173 ~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l 226 (234)
+.+..+|..++++++|++|++++ +.++.+|.. ++.+++|+.|+++++.--
T Consensus 280 -N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~--~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 280 -NRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE--FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp -SCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS--TTSCTTCCCEECTTSCCC
T ss_pred -CcCCccChhhcCCCCCCEEECCC-CCCCccChh--hhcCCCccEEeCCCCccC
Confidence 45667787788888888888887 467788877 788888888888877654
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=128.13 Aligned_cols=153 Identities=14% Similarity=0.072 Sum_probs=119.6
Q ss_pred CCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCC-CCCC-CCccC-CCCccEEEecCCccccc-cccccC
Q 036876 60 KMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYP-LKSL-PSNLS-AEKLVLLEVPGSSIEQL-WDGVKH 134 (234)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~-~~~l-p~~~~-l~~L~~L~l~~~~l~~l-~~~~~~ 134 (234)
-.++++.|++++|.+.+ ..|..+..+ +|++|++++|. ...+ |..+. +++|++|++++|++..+ |..+++
T Consensus 22 lp~~l~~LdLs~N~i~~------i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRT------VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCCCCE------ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCCCcCCc------cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 34789999999998874 457788899 99999999984 5555 55676 99999999999999976 778999
Q ss_pred CCCCcEEEcccCcccccCCCC---CCCCCCCCCccEEEecCCCCCCcc-c-ccccCCCCCCEEeccCCCCCCcCCCcccC
Q 036876 135 YSKLNQIIHVACKKLIAKTPN---PTLMPHLNKLVILILRGSKSLKSL-P-AEIFNLECLTELDLSDCSKLKRLPEILSG 209 (234)
Q Consensus 135 l~~L~~L~l~~~~~l~~~lp~---~~~l~~L~~l~~L~l~~~~~l~~l-p-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 209 (234)
+++|++|++++|. ++..+|. ++.+++| +.|++++| .+..+ + ..++++++|++|++++|......|.. +
T Consensus 96 l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L---~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~--l 168 (844)
T 3j0a_A 96 LFHLFELRLYFCG-LSDAVLKDGYFRNLKAL---TRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE--L 168 (844)
T ss_dssp CSSCCCEECTTCC-CSSCCSTTCCCSSCSSC---CEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG--G
T ss_pred CcccCEeeCcCCC-CCcccccCccccccCCC---CEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHH--c
Confidence 9999999999998 5431443 5555555 99999996 44443 3 56899999999999996444444554 5
Q ss_pred CCC--CCCcEEecCCCcC
Q 036876 210 IVN--DALRIQHIGHLLA 225 (234)
Q Consensus 210 ~~l--~~L~~l~l~~c~~ 225 (234)
+.+ ++|+.+++++|.-
T Consensus 169 ~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp HHHHHCSSCCCEECCSBS
T ss_pred ccccCCccceEECCCCcc
Confidence 555 7899999987753
No 99
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=1.5e-14 Score=109.64 Aligned_cols=101 Identities=18% Similarity=0.249 Sum_probs=54.7
Q ss_pred CccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc--cccCCCCC
Q 036876 114 KLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA--EIFNLECL 189 (234)
Q Consensus 114 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~--~~~~l~~L 189 (234)
+|++|++++|+++.+ ..++.+++|++|++++|. ++. +|. ++.+++| +.|++++ +.++.+|. .++.+++|
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L---~~L~L~~-N~i~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICR-IGEGLDQALPDL---TELILTN-NSLVELGDLDPLASLKSL 115 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCE-ECSCHHHHCTTC---CEEECCS-CCCCCGGGGGGGGGCTTC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccc-cCcchhhcCCCC---CEEECCC-CcCCcchhhHhhhcCCCC
Confidence 555555555555555 445555566666666655 554 443 3444444 6666655 34455554 45555666
Q ss_pred CEEeccCCCCCCcCCC----cccCCCCCCCcEEecCCCc
Q 036876 190 TELDLSDCSKLKRLPE----ILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 190 ~~L~l~~c~~l~~lp~----~~~~~~l~~L~~l~l~~c~ 224 (234)
+++++++| .+..+|. . ++.+++|+.++++++.
T Consensus 116 ~~L~l~~N-~i~~~~~~~~~~--~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 116 TYLCILRN-PVTNKKHYRLYV--IYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSS-GGGGSTTHHHHH--HHHCTTCSEETTEECC
T ss_pred CEEEecCC-CCCCcHhHHHHH--HHHCCccceeCCCcCC
Confidence 66666653 3445554 2 3455666666665543
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=1.4e-13 Score=115.52 Aligned_cols=172 Identities=15% Similarity=0.159 Sum_probs=103.9
Q ss_pred ceeeEEEecCCceeeecCchhhCCCCCcceEEecCCCCCCCCccccccc--------------------------CCCCc
Q 036876 37 KIEGICLDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYL--------------------------QDLGF 90 (234)
Q Consensus 37 ~i~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--------------------------~~l~~ 90 (234)
.++.+.+..+.+. .+++..|.++++|++|++++|.+.+ .+| ..+..
T Consensus 31 ~l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N~i~~------~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 31 NAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLE------VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp TCSEEEEESCCCS--EECTTSSTTCTTCCEEEEECCTTCC------EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred CCCEEEccCCcCC--CcCHHHHcCCCCCCEEECcCCCCCC------ccChhHhhcchhhhhhhcccCCcccccCchhhhh
Confidence 3555555544443 4566779999999999999997643 222 22333
Q ss_pred c-EEEEEeeCCCCCCCCCCcc--CCCCccEEEecC-Ccccccccc-ccCC-CCCcEEEcccCcccccCCCC-CCCCCCCC
Q 036876 91 V-EVKYLHWHGYPLKSLPSNL--SAEKLVLLEVPG-SSIEQLWDG-VKHY-SKLNQIIHVACKKLIAKTPN-PTLMPHLN 163 (234)
Q Consensus 91 l-~L~~L~l~~~~~~~lp~~~--~l~~L~~L~l~~-~~l~~l~~~-~~~l-~~L~~L~l~~~~~l~~~lp~-~~~l~~L~ 163 (234)
+ +|++|++++|.+..+|... ...++..+++.+ +++..++.. +..+ ..+++|++++|. ++. +|. .....++
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~-i~~~~f~~~~L- 179 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQE-IHNSAFNGTQL- 179 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCE-ECTTSSTTEEE-
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccC-CChhhccccch-
Confidence 3 4444444444444443321 133344444433 344444332 2333 346777777776 666 665 3333445
Q ss_pred CccEEEecCCCCCCcccc-cccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCC
Q 036876 164 KLVILILRGSKSLKSLPA-EIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 164 ~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l 226 (234)
+.+++++++.++.+|. .++++++|++|++++ +.+..+|.. .+..|+.|.+.+|.++
T Consensus 180 --~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~----~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 180 --DELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSY----GLENLKKLRARSTYNL 236 (350)
T ss_dssp --EEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSS----SCTTCCEEECTTCTTC
T ss_pred --hHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChh----hhccchHhhhccCCCc
Confidence 8888887778888875 467888888888887 578888873 3566777777777666
No 101
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=4.4e-13 Score=103.10 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=46.0
Q ss_pred EEEEEeeCCCCCCCCCCc--cC-CCCccEEEecCCccccc-cccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCc
Q 036876 92 EVKYLHWHGYPLKSLPSN--LS-AEKLVLLEVPGSSIEQL-WDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKL 165 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~--~~-l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l 165 (234)
++++|++++|.+..++.. +. +++|++|++++|+++.+ |..+..+++|++|++++|. ++. ++. |+.+++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L--- 104 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKE-ISNKMFLGLHQL--- 104 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCE-ECSSSSTTCTTC---
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCc-cCHHHhcCCCCC---
Confidence 444555555555444432 33 45555555555555544 3344455555555555554 333 322 3333333
Q ss_pred cEEEecCCCCCCc-ccccccCCCCCCEEeccC
Q 036876 166 VILILRGSKSLKS-LPAEIFNLECLTELDLSD 196 (234)
Q Consensus 166 ~~L~l~~~~~l~~-lp~~~~~l~~L~~L~l~~ 196 (234)
+.|++++| .+.. .|..+..+++|+++++++
T Consensus 105 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 105 KTLNLYDN-QISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CEEECCSS-CCCEECTTSSTTCTTCCEEECTT
T ss_pred CEEECCCC-cCCeeCHHHhhcCCCCCEEEeCC
Confidence 55555552 2222 234444555555555554
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=3.8e-13 Score=105.67 Aligned_cols=125 Identities=10% Similarity=0.179 Sum_probs=102.6
Q ss_pred CCcceEEecCCCCCCCCcccccc-c-CCCCcc-EEEEEeeCCCCCCCCCC-ccC-CCCccEEEecCCcccccccc-ccCC
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSY-L-QDLGFV-EVKYLHWHGYPLKSLPS-NLS-AEKLVLLEVPGSSIEQLWDG-VKHY 135 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~-~-~~l~~l-~L~~L~l~~~~~~~lp~-~~~-l~~L~~L~l~~~~l~~l~~~-~~~l 135 (234)
+.++.|++++|.+. .+ + ..+..+ +|++|++++|.+..+++ .+. +.+|++|++++|+++.++.. +..+
T Consensus 32 ~~~~~L~L~~N~l~-------~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 32 QYTAELRLNNNEFT-------VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp TTCSEEECCSSCCC-------EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCCEEEcCCCcCC-------ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 35789999999877 44 2 336777 99999999999888875 566 89999999999999988765 8889
Q ss_pred CCCcEEEcccCcccccCC-CC-CCCCCCCCCccEEEecCCCCCCcc-cccccCCCCCCEEeccCCCC
Q 036876 136 SKLNQIIHVACKKLIAKT-PN-PTLMPHLNKLVILILRGSKSLKSL-PAEIFNLECLTELDLSDCSK 199 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~l-p~-~~~l~~L~~l~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~ 199 (234)
++|++|++++|. ++. + |. |..+++| +.|++++ +.++.+ |..+..+++|+++++++++.
T Consensus 105 ~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L---~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 105 ESLKTLMLRSNR-ITC-VGNDSFIGLSSV---RLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCEEECTTSC-CCC-BCTTSSTTCTTC---SEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCCCEEECCCCc-CCe-ECHhHcCCCccC---CEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 999999999998 776 5 45 7777777 9999999 466665 67899999999999998643
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.49 E-value=2.5e-15 Score=124.50 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=119.2
Q ss_pred CCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCC-Ccc-C-CCCccEEEecCCccccccccccC
Q 036876 59 TKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLP-SNL-S-AEKLVLLEVPGSSIEQLWDGVKH 134 (234)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp-~~~-~-l~~L~~L~l~~~~l~~l~~~~~~ 134 (234)
..+++|+.|++++|.+.+ ..+..+..+ +|++|++++|.+..++ ..+ . +++|++|++++|+++.++... .
T Consensus 117 ~~~~~L~~L~l~~N~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~ 189 (317)
T 3o53_A 117 SRGQGKKNIYLANNKITM------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-V 189 (317)
T ss_dssp CCCSSCEEEECCSSCCCS------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-C
T ss_pred cccCCCCEEECCCCCCCC------ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc-c
Confidence 357889999999998874 334567777 9999999999988764 333 3 799999999999999885443 5
Q ss_pred CCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCC-CcCCCcccCCCC
Q 036876 135 YSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKL-KRLPEILSGIVN 212 (234)
Q Consensus 135 l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l-~~lp~~~~~~~l 212 (234)
+++|++|++++|. ++. +|. +..+++| +.|++++ +.+..+|..+..+++|+.+++++|+.. ..+|.. ++.+
T Consensus 190 l~~L~~L~Ls~N~-l~~-l~~~~~~l~~L---~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~--~~~~ 261 (317)
T 3o53_A 190 FAKLKTLDLSSNK-LAF-MGPEFQSAAGV---TWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKN 261 (317)
T ss_dssp CTTCCEEECCSSC-CCE-ECGGGGGGTTC---SEEECTT-SCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH--HHTC
T ss_pred cccCCEEECCCCc-CCc-chhhhcccCcc---cEEECcC-CcccchhhHhhcCCCCCEEEccCCCccCcCHHHH--Hhcc
Confidence 8999999999998 888 876 7777777 9999999 577889988999999999999996544 355555 6677
Q ss_pred CCCcEEecCC
Q 036876 213 DALRIQHIGH 222 (234)
Q Consensus 213 ~~L~~l~l~~ 222 (234)
++|+.+++++
T Consensus 262 ~~L~~l~l~~ 271 (317)
T 3o53_A 262 QRVQTVAKQT 271 (317)
T ss_dssp HHHHHHHHHH
T ss_pred ccceEEECCC
Confidence 7777776653
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=2.6e-14 Score=105.27 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=57.3
Q ss_pred CCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCccc--c
Q 036876 106 LPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLP--A 181 (234)
Q Consensus 106 lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp--~ 181 (234)
+|..+. +++|++|++++|+++.+ ..++.+++|++|++++|. ++..+|. ++.+++| +.|++++| .++.+| .
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L---~~L~ls~N-~i~~~~~~~ 107 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNL---THLNLSGN-KIKDLSTIE 107 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTC---CEEECTTS-CCCSHHHHG
T ss_pred HHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCC---CEEECCCC-cCCChHHHH
Confidence 343333 55555666665555555 445556666666666665 3321333 3334455 66666663 444443 4
Q ss_pred cccCCCCCCEEeccCCCCCCcCCC----cccCCCCCCCcEEecC
Q 036876 182 EIFNLECLTELDLSDCSKLKRLPE----ILSGIVNDALRIQHIG 221 (234)
Q Consensus 182 ~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~l~~L~~l~l~ 221 (234)
.++.+++|+++++++| .+..+|. . ++.+++|+.|+++
T Consensus 108 ~~~~l~~L~~L~l~~N-~l~~~~~~~~~~--~~~l~~L~~L~l~ 148 (149)
T 2je0_A 108 PLKKLENLKSLDLFNC-EVTNLNDYRENV--FKLLPQLTYLDGY 148 (149)
T ss_dssp GGGGCTTCCEEECTTC-GGGGSTTHHHHH--HHHCTTCCEETTB
T ss_pred HHhhCCCCCEEeCcCC-cccchHHHHHHH--HHHCCCcccccCC
Confidence 5566666666666663 4455554 3 4556666666554
No 105
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4.7e-14 Score=106.97 Aligned_cols=128 Identities=15% Similarity=0.236 Sum_probs=104.9
Q ss_pred hhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc--EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccc
Q 036876 56 NTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV--EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGV 132 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~ 132 (234)
..+.++++|+.|++++|.+. .++. +..+ +|++|++++|.+..+ +.+. +++|++|++++|+++.+|.++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-------~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-------VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-------SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCCCCc-------hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 34667899999999999876 3443 3333 899999999998887 4555 899999999999999998775
Q ss_pred -cCCCCCcEEEcccCcccccCCCC---CCCCCCCCCccEEEecCCCCCCccccc----ccCCCCCCEEeccCCC
Q 036876 133 -KHYSKLNQIIHVACKKLIAKTPN---PTLMPHLNKLVILILRGSKSLKSLPAE----IFNLECLTELDLSDCS 198 (234)
Q Consensus 133 -~~l~~L~~L~l~~~~~l~~~lp~---~~~l~~L~~l~~L~l~~~~~l~~lp~~----~~~l~~L~~L~l~~c~ 198 (234)
..+++|++|++++|. ++. +|. ++.+++| +.|++++| .+..+|.. ++.+++|+.++++++.
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~-~~~~~~l~~l~~L---~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVE-LGDLDPLASLKSL---TYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCC-GGGGGGGGGCTTC---CEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhcCCCCCEEECCCCc-CCc-chhhHhhhcCCCC---CEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 889999999999998 777 775 4555555 99999994 66777864 8899999999999853
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=3.9e-14 Score=124.04 Aligned_cols=175 Identities=14% Similarity=0.052 Sum_probs=120.9
Q ss_pred ceeeEEEecCCceeeecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCc------
Q 036876 37 KIEGICLDMSKVKEICLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSN------ 109 (234)
Q Consensus 37 ~i~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~------ 109 (234)
.++.+ +++.+....+.+..|..+++|++|++++|.+.+ .++ +..+ +|++|++++|.+..+|..
T Consensus 35 ~L~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L 104 (487)
T 3oja_A 35 NVKEL--DLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-------TLD-LESLSTLRTLDLNNNYVQELLVGPSIETL 104 (487)
T ss_dssp GCCEE--ECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE-------EEE-CTTCTTCCEEECCSSEEEEEEECTTCCEE
T ss_pred CccEE--EeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC-------Ccc-cccCCCCCEEEecCCcCCCCCCCCCcCEE
Confidence 45655 445444445667789999999999999998763 222 5555 677777666654433311
Q ss_pred ------------cCCCCccEEEecCCccccc-cccccCCCCCcEEEcccCcccccCCCC-CC-CCCCCCCccEEEecCCC
Q 036876 110 ------------LSAEKLVLLEVPGSSIEQL-WDGVKHYSKLNQIIHVACKKLIAKTPN-PT-LMPHLNKLVILILRGSK 174 (234)
Q Consensus 110 ------------~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~lp~-~~-~l~~L~~l~~L~l~~~~ 174 (234)
..+++|+.|++++|+++.+ |..++.+++|++|++++|. ++...|. +. .+++| +.|++++ +
T Consensus 105 ~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L---~~L~Ls~-N 179 (487)
T 3oja_A 105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTL---EHLNLQY-N 179 (487)
T ss_dssp ECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTC---CEEECTT-S
T ss_pred ECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcc---cEEecCC-C
Confidence 1256778888888888765 4457778888888888887 5441343 43 45666 8888888 4
Q ss_pred CCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCCChhh
Q 036876 175 SLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAVRWKE 230 (234)
Q Consensus 175 ~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l~~~~ 230 (234)
.+..+|. ...+++|++|++++ +.+..+|+. ++.+++|+.|++++|.--..|+
T Consensus 180 ~l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 180 FIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPE--FQSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp CCCEEEC-CCCCTTCCEEECCS-SCCCEECGG--GGGGTTCSEEECTTSCCCEECT
T ss_pred ccccccc-cccCCCCCEEECCC-CCCCCCCHh--HcCCCCccEEEecCCcCcccch
Confidence 5666654 44688899999988 567788887 8888999999998875444443
No 107
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=1e-12 Score=118.09 Aligned_cols=54 Identities=26% Similarity=0.220 Sum_probs=32.2
Q ss_pred cEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcCC
Q 036876 166 VILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLAV 226 (234)
Q Consensus 166 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~l 226 (234)
+.|++++ +.++.+|. .+++|+.|++++| .+..+|.. ++.+++|+.|++++|+--
T Consensus 244 ~~L~Ls~-N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~--l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 244 KELMVSG-NRLTSLPM---LPSGLLSLSVYRN-QLTRLPES--LIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCCSCCGG--GGGSCTTCEEECCSCCCC
T ss_pred cEEECCC-CCCCcCCc---ccccCcEEeCCCC-CCCcCCHH--HhhccccCEEEecCCCCC
Confidence 5555554 24444443 3455666666663 55666766 677777777777776543
No 108
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.48 E-value=1.3e-12 Score=113.50 Aligned_cols=118 Identities=22% Similarity=0.272 Sum_probs=56.4
Q ss_pred CCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCCCCCCCCCCCcc
Q 036876 88 LGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPNPTLMPHLNKLV 166 (234)
Q Consensus 88 l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~ 166 (234)
+..+ +|++|++++|.+..+|.. ..+|++|++++|+++.+| +++.+++|++|++++|. ++. +|.+ ..+| +
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~-l~~~--~~~L---~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKK-LPDL--PLSL---E 218 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSS-CCCC--CTTC---C
T ss_pred cCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCc-CCCC--cCcc---c
Confidence 3444 455555555554444432 235555555555555544 34555555555555554 444 4431 1233 5
Q ss_pred EEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCC
Q 036876 167 ILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 167 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c 223 (234)
.|++++| .+..+|. ++.+++|+++++++ +.+..+|.. +++|+.|++++|
T Consensus 219 ~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~-N~l~~l~~~-----~~~L~~L~l~~N 267 (454)
T 1jl5_A 219 SIVAGNN-ILEELPE-LQNLPFLTTIYADN-NLLKTLPDL-----PPSLEALNVRDN 267 (454)
T ss_dssp EEECCSS-CCSSCCC-CTTCTTCCEEECCS-SCCSSCCSC-----CTTCCEEECCSS
T ss_pred EEECcCC-cCCcccc-cCCCCCCCEEECCC-CcCCccccc-----ccccCEEECCCC
Confidence 5555553 4445552 55555566666555 344444442 234444444444
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=4.8e-15 Score=123.24 Aligned_cols=155 Identities=21% Similarity=0.203 Sum_probs=91.8
Q ss_pred hhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCC-CCCC--CCCccC-CCCccEEEecCC-cccc--c
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGY-PLKS--LPSNLS-AEKLVLLEVPGS-SIEQ--L 128 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~-~~~~--lp~~~~-l~~L~~L~l~~~-~l~~--l 128 (234)
.+..+++|+.|++++|.+.+ ..+..+..+ +|++|++++| .+.. ++..+. +++|++|++++| .++. +
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSD------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCH------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred HHhhCCCCCEEeCcCcccCH------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence 35566666666666664432 233444455 6777777766 3442 343344 667777777777 6663 4
Q ss_pred cccccCCC-CCcEEEcccCc-cc--ccCCCC-CCCCCCCCCccEEEecCCCCCC-cccccccCCCCCCEEeccCCCCCCc
Q 036876 129 WDGVKHYS-KLNQIIHVACK-KL--IAKTPN-PTLMPHLNKLVILILRGSKSLK-SLPAEIFNLECLTELDLSDCSKLKR 202 (234)
Q Consensus 129 ~~~~~~l~-~L~~L~l~~~~-~l--~~~lp~-~~~l~~L~~l~~L~l~~~~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~ 202 (234)
+..+..++ +|++|++++|. .+ .. +|. ++.+++| +.|++++|..++ ..+..+..+++|++|++++|..+..
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~-l~~~~~~~~~L---~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSD-LSTLVRRCPNL---VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHH-HHHHHHHCTTC---SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHH-HHHHHhhCCCC---CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 55566677 77777777774 12 23 444 4455555 777777765343 3455667777777777777653221
Q ss_pred C-CCcccCCCCCCCcEEecCCC
Q 036876 203 L-PEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 203 l-p~~~~~~~l~~L~~l~l~~c 223 (234)
- ... ++.+++|+.|++++|
T Consensus 263 ~~~~~--l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 263 ETLLE--LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGG--GGGCTTCCEEECTTS
T ss_pred HHHHH--HhcCCCCCEEeccCc
Confidence 1 112 566777788887777
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.48 E-value=3.7e-14 Score=104.44 Aligned_cols=123 Identities=22% Similarity=0.144 Sum_probs=99.0
Q ss_pred CCCcceEEecCCCCC-CCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCcccc-ccccccCCC
Q 036876 61 MPKLRFLKFYSSSFN-GENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQ-LWDGVKHYS 136 (234)
Q Consensus 61 l~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~-l~~~~~~l~ 136 (234)
.++|+.|++++|.+. + .+|..+..+ +|++|++++|.+..+ ..+. +++|++|++++|+++. +|..++.++
T Consensus 16 ~~~l~~L~l~~n~l~~~------~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEG------KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTT------BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCcCChh------HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 467889999998765 3 567777777 899999999988877 4555 8999999999999997 777777899
Q ss_pred CCcEEEcccCcccccCCC--C-CCCCCCCCCccEEEecCCCCCCcccc----cccCCCCCCEEeccC
Q 036876 137 KLNQIIHVACKKLIAKTP--N-PTLMPHLNKLVILILRGSKSLKSLPA----EIFNLECLTELDLSD 196 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp--~-~~~l~~L~~l~~L~l~~~~~l~~lp~----~~~~l~~L~~L~l~~ 196 (234)
+|++|++++|. ++. +| . ++.+++| +.|++++| .+..+|. .++.+++|+.|++++
T Consensus 89 ~L~~L~ls~N~-i~~-~~~~~~~~~l~~L---~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGNK-IKD-LSTIEPLKKLENL---KSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTSC-CCS-HHHHGGGGGCTTC---CEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCCCc-CCC-hHHHHHHhhCCCC---CEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999998 776 64 4 6666666 99999995 6666664 688899999998863
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=1.1e-12 Score=116.77 Aligned_cols=138 Identities=25% Similarity=0.273 Sum_probs=112.0
Q ss_pred CCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccCCCCccEEEecCCccccccccccCCCCCcE
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDGVKHYSKLNQ 140 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 140 (234)
++|+.|++++|.+. .+| ..+ +|++|++++|.+..+|. +. .+|++|++++|+++.+|. .+++|++
T Consensus 80 ~~L~~L~Ls~N~l~-------~ip---~~l~~L~~L~Ls~N~l~~ip~-l~-~~L~~L~Ls~N~l~~lp~---~l~~L~~ 144 (571)
T 3cvr_A 80 PQITVLEITQNALI-------SLP---ELPASLEYLDACDNRLSTLPE-LP-ASLKHLDVDNNQLTMLPE---LPALLEY 144 (571)
T ss_dssp TTCSEEECCSSCCS-------CCC---CCCTTCCEEECCSSCCSCCCC-CC-TTCCEEECCSSCCSCCCC---CCTTCCE
T ss_pred CCCCEEECcCCCCc-------ccc---cccCCCCEEEccCCCCCCcch-hh-cCCCEEECCCCcCCCCCC---cCccccE
Confidence 78999999999876 566 345 89999999999988887 43 399999999999999887 6899999
Q ss_pred EEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCC-----
Q 036876 141 IIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDAL----- 215 (234)
Q Consensus 141 L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L----- 215 (234)
|++++|. ++. +|. .+++| +.|++++ +.++.+|. +. ++|+.|++++ +.+..+|. +.. +|
T Consensus 145 L~Ls~N~-l~~-lp~--~l~~L---~~L~Ls~-N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~---~~~--~L~~~~~ 207 (571)
T 3cvr_A 145 INADNNQ-LTM-LPE--LPTSL---EVLSVRN-NQLTFLPE-LP--ESLEALDVST-NLLESLPA---VPV--RNHHSEE 207 (571)
T ss_dssp EECCSSC-CSC-CCC--CCTTC---CEEECCS-SCCSCCCC-CC--TTCCEEECCS-SCCSSCCC---CC----------
T ss_pred EeCCCCc-cCc-CCC--cCCCc---CEEECCC-CCCCCcch-hh--CCCCEEECcC-CCCCchhh---HHH--hhhcccc
Confidence 9999998 888 886 44566 9999999 56777888 65 8999999998 57889988 443 67
Q ss_pred --cEEecCCCcCCChhhh
Q 036876 216 --RIQHIGHLLAVRWKEM 231 (234)
Q Consensus 216 --~~l~l~~c~~l~~~~~ 231 (234)
+.|++++|.--..|+.
T Consensus 208 ~L~~L~Ls~N~l~~lp~~ 225 (571)
T 3cvr_A 208 TEIFFRCRENRITHIPEN 225 (571)
T ss_dssp CCEEEECCSSCCCCCCGG
T ss_pred cceEEecCCCcceecCHH
Confidence 9999999865555653
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=5.6e-13 Score=111.78 Aligned_cols=154 Identities=20% Similarity=0.267 Sum_probs=124.7
Q ss_pred ecCchhhCCCCCcceEEecCCCCCCCCcccccccC-CCCcc-EEEEEeeCC-CCCCCCCCc-cC--CCCccEEEecCCcc
Q 036876 52 CLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQ-DLGFV-EVKYLHWHG-YPLKSLPSN-LS--AEKLVLLEVPGSSI 125 (234)
Q Consensus 52 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~l-~L~~L~l~~-~~~~~lp~~-~~--l~~L~~L~l~~~~l 125 (234)
.+.+..|..+++|+.|++++|.+. .+|. ..... ++..+++.+ +.+..++.. +. ...++.|++++|++
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~-------~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIK-------HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCS-------SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCchhhhhccccccccccccccc-------cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 445677889999999999999776 3433 23333 778888865 557777654 33 35799999999999
Q ss_pred ccccccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcC
Q 036876 126 EQLWDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRL 203 (234)
Q Consensus 126 ~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l 203 (234)
+.+|.+.....+|++++++++..++. +|. |+.+++| +.|++++ +.++.+|. ..+.+|+.|.+.+++.++.+
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~-i~~~~f~~l~~L---~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGP---VILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCC-CCTTTTTTEECC---SEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCC
T ss_pred cCCChhhccccchhHHhhccCCcccC-CCHHHhccCccc---chhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcC
Confidence 99999888888999999998777999 986 7777777 9999999 58889985 34778889999899999999
Q ss_pred CCcccCCCCCCCcEEecCC
Q 036876 204 PEILSGIVNDALRIQHIGH 222 (234)
Q Consensus 204 p~~~~~~~l~~L~~l~l~~ 222 (234)
|. +..+++|+.+++++
T Consensus 240 P~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 240 PT---LEKLVALMEASLTY 255 (350)
T ss_dssp CC---TTTCCSCCEEECSC
T ss_pred CC---chhCcChhhCcCCC
Confidence 98 89999999999875
No 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.46 E-value=1.4e-12 Score=117.24 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=8.8
Q ss_pred CCCcceEEecCCCCC
Q 036876 61 MPKLRFLKFYSSSFN 75 (234)
Q Consensus 61 l~~L~~L~l~~~~~~ 75 (234)
+++|++|++++|.+.
T Consensus 80 l~~L~~L~Ls~N~l~ 94 (622)
T 3g06_A 80 PPELRTLEVSGNQLT 94 (622)
T ss_dssp CTTCCEEEECSCCCS
T ss_pred CCCCCEEEcCCCcCC
Confidence 455666666666554
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=4.5e-13 Score=103.02 Aligned_cols=100 Identities=13% Similarity=0.154 Sum_probs=51.2
Q ss_pred CcceEEecCCCCCCCCcccccccC--CCCcc-EEEEEeeCCCCCCCC-CCccC-CCCccEEEecCCcccccccc-ccCCC
Q 036876 63 KLRFLKFYSSSFNGENKCKVSYLQ--DLGFV-EVKYLHWHGYPLKSL-PSNLS-AEKLVLLEVPGSSIEQLWDG-VKHYS 136 (234)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~~--~l~~l-~L~~L~l~~~~~~~l-p~~~~-l~~L~~L~l~~~~l~~l~~~-~~~l~ 136 (234)
+++.|++++|.+. .++. .+..+ +|++|++++|.+..+ |..+. +.+|++|++++|+++.++.. +..++
T Consensus 30 ~l~~L~l~~n~i~-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 30 HTTELLLNDNELG-------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH 102 (192)
T ss_dssp TCSEEECCSCCCC-------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred CCCEEECCCCcCC-------ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC
Confidence 5555566655544 2322 14444 555666655555544 33343 55566666666655554433 45555
Q ss_pred CCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCC
Q 036876 137 KLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGS 173 (234)
Q Consensus 137 ~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~ 173 (234)
+|++|++++|. ++...|. ++.+++| +.|++++|
T Consensus 103 ~L~~L~L~~N~-l~~~~~~~~~~l~~L---~~L~L~~N 136 (192)
T 1w8a_A 103 QLKTLNLYDNQ-ISCVMPGSFEHLNSL---TSLNLASN 136 (192)
T ss_dssp TCCEEECCSSC-CCEECTTSSTTCTTC---CEEECTTC
T ss_pred CCCEEECCCCc-CCeeCHHHhhcCCCC---CEEEeCCC
Confidence 56666665555 3330233 4444444 56665554
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.46 E-value=2.1e-12 Score=112.11 Aligned_cols=139 Identities=20% Similarity=0.254 Sum_probs=85.2
Q ss_pred hhCCCCCcceEEecCCCCCCCCcccccccCCCCccEEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCC
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFVEVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHY 135 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l 135 (234)
.|.++++|++|++++|.+.+ +|..+. +|++|++++|.+..+|. +. +++|++|++++|+++.+|...
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-------lp~~~~--~L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l~~l~~~~--- 214 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-------LPDLPP--SLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLP--- 214 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-------CCCCCT--TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCCCC---
T ss_pred ccCCCCCCCEEECCCCcCcc-------cCCCcc--cccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcCCcCCCCc---
Confidence 46777788888888876652 332211 67778888887777763 44 777777777777777665442
Q ss_pred CCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCC
Q 036876 136 SKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCSKLKRLPEILSGIVNDAL 215 (234)
Q Consensus 136 ~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L 215 (234)
.+|++|++++|. ++. +|.++.+++| +.|++++ +.+..+|.. +++|+.|++++| .+..+|.. +++|
T Consensus 215 ~~L~~L~l~~n~-l~~-lp~~~~l~~L---~~L~l~~-N~l~~l~~~---~~~L~~L~l~~N-~l~~l~~~-----~~~L 279 (454)
T 1jl5_A 215 LSLESIVAGNNI-LEE-LPELQNLPFL---TTIYADN-NLLKTLPDL---PPSLEALNVRDN-YLTDLPEL-----PQSL 279 (454)
T ss_dssp TTCCEEECCSSC-CSS-CCCCTTCTTC---CEEECCS-SCCSSCCSC---CTTCCEEECCSS-CCSCCCCC-----CTTC
T ss_pred CcccEEECcCCc-CCc-ccccCCCCCC---CEEECCC-CcCCccccc---ccccCEEECCCC-cccccCcc-----cCcC
Confidence 467777777775 666 6665555555 7777766 345555532 245666666653 34445542 2445
Q ss_pred cEEecCCC
Q 036876 216 RIQHIGHL 223 (234)
Q Consensus 216 ~~l~l~~c 223 (234)
+.+++++|
T Consensus 280 ~~L~ls~N 287 (454)
T 1jl5_A 280 TFLDVSEN 287 (454)
T ss_dssp CEEECCSS
T ss_pred CEEECcCC
Confidence 55555444
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.1e-14 Score=133.32 Aligned_cols=114 Identities=13% Similarity=0.088 Sum_probs=71.1
Q ss_pred chhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccc
Q 036876 55 PNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGV 132 (234)
Q Consensus 55 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~ 132 (234)
+..|..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+..+|..+. +.+|++|+|++|+++.+|..+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-------~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-------NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-------CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred hhhhccCCCCcEEECCCCCCC-------CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 445666677777777777655 455555555 67777777777666666665 677777777777777777667
Q ss_pred cCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCccc
Q 036876 133 KHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLP 180 (234)
Q Consensus 133 ~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp 180 (234)
+.+.+|++|++++|. ++. +|. |+.+.+| +.|++++|.....+|
T Consensus 290 ~~l~~L~~L~L~~N~-l~~-lp~~~~~l~~L---~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNM-VTT-LPWEFGNLCNL---QFLGVEGNPLEKQFL 333 (727)
T ss_dssp GGGTTCSEEECCSSC-CCC-CCSSTTSCTTC---CCEECTTSCCCSHHH
T ss_pred cCCCCCCEEECCCCC-CCc-cChhhhcCCCc---cEEeCCCCccCCCCh
Confidence 777777777777765 666 666 5555555 777777643333333
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=2.8e-13 Score=120.65 Aligned_cols=118 Identities=17% Similarity=0.119 Sum_probs=79.7
Q ss_pred EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEe
Q 036876 92 EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILIL 170 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l 170 (234)
.|++|++++|.+..+|. +. +.+|+.|++++|+++.+|..++.+++|++|++++|. ++. +|.++.+++| +.|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~-lp~l~~l~~L---~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LEN-VDGVANLPRL---QELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCC-CGGGTTCSSC---CEEEC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCC-CcccCCCCCC---cEEEC
Confidence 35567777777777765 54 777777777777777777777777777777777776 666 7666566555 77777
Q ss_pred cCCCCCCcc--cccccCCCCCCEEeccCCCCCCcCCCcccCCC----CCCCcEEe
Q 036876 171 RGSKSLKSL--PAEIFNLECLTELDLSDCSKLKRLPEILSGIV----NDALRIQH 219 (234)
Q Consensus 171 ~~~~~l~~l--p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~----l~~L~~l~ 219 (234)
++ +.++.+ |..++.+++|+.|++++ +.+..+|+. ... +++|+.|+
T Consensus 516 s~-N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~--~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 516 CN-NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGI--QERLAEMLPSVSSIL 566 (567)
T ss_dssp CS-SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSC--TTHHHHHCTTCSEEE
T ss_pred CC-CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccH--HHHHHHHCcccCccC
Confidence 77 355555 66677777777777777 445555553 322 56666664
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=2.4e-12 Score=97.46 Aligned_cols=123 Identities=21% Similarity=0.272 Sum_probs=74.7
Q ss_pred EEEeeCCCCCCCCCCccCCCCccEEEecCCcccccccc-ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEe
Q 036876 94 KYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQLWDG-VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILIL 170 (234)
Q Consensus 94 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l 170 (234)
+.++++++.+..+|..+ ..+++.|++++|+++.++.. ++.+++|++|++++|. ++. +|. ++.+++| +.|++
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L---~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQS-LPDGVFDKLTKL---TILYL 83 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCC-CCTTTTTTCTTC---CEEEC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceE-eChhHccCCCcc---CEEEC
Confidence 34555555555555332 35667777777776666554 4666777777777765 555 554 4555555 77777
Q ss_pred cCCCCCCcccc-cccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCCcC
Q 036876 171 RGSKSLKSLPA-EIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLLA 225 (234)
Q Consensus 171 ~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~~ 225 (234)
++ +.++.+|. .++.+++|++|++++ +.+..+|..+ +..+++|+++++++++-
T Consensus 84 ~~-N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~-~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 84 HE-NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGI-FDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred CC-CCccccCHHHhhCCcccCEEECcC-CcceEeCHHH-hcCCcccCEEEecCCCe
Confidence 76 34555553 356667777777776 3556666641 35567777777766653
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=1.8e-12 Score=99.84 Aligned_cols=119 Identities=18% Similarity=0.310 Sum_probs=73.2
Q ss_pred ceEEecCCCCCCCCcccccccCCCCccEEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccc-cccCCCCCcEEE
Q 036876 65 RFLKFYSSSFNGENKCKVSYLQDLGFVEVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWD-GVKHYSKLNQII 142 (234)
Q Consensus 65 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~ 142 (234)
+.++++++.+. .+|..+. -++++|++++|.+..+|..+. +.+|++|++++|+++.++. .+.++++|++|+
T Consensus 13 ~~l~~~~~~l~-------~ip~~~~-~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLK-------VLPKGIP-RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCS-------SCCSCCC-TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCC-------cCCCCCC-CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 35566666544 4443321 156666677766666665555 6777777777777776654 366677777777
Q ss_pred cccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccCC
Q 036876 143 HVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDC 197 (234)
Q Consensus 143 l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c 197 (234)
+++|. ++. ++. |+.+++| +.|++++ +.+..+|. .+..+++|+.++++++
T Consensus 85 Ls~N~-l~~-i~~~~f~~l~~L---~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 85 LSYNR-LRC-IPPRTFDGLKSL---RLLSLHG-NDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCSSC-CCB-CCTTTTTTCTTC---CEEECCS-SCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCc-cCE-eCHHHhCCCCCC---CEEECCC-CCCCeeChhhhhcCccccEEEeCCC
Confidence 77776 555 543 5555555 7777776 45555554 3666677777777764
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=2.2e-14 Score=119.21 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=117.0
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCC-CCCCccC-CCCccEEEecCC-cccc--cccc
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLK-SLPSNLS-AEKLVLLEVPGS-SIEQ--LWDG 131 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~-~lp~~~~-l~~L~~L~l~~~-~l~~--l~~~ 131 (234)
+..+++|+.|++++|.+.+ ..++..+..+ +|++|++++|.+. ..+..+. +++|++|++++| .++. ++..
T Consensus 89 ~~~~~~L~~L~L~~~~l~~-----~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~ 163 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEV-----STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163 (336)
T ss_dssp CCCCBCCCEEECTTCEECH-----HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred hccCCCCCEEEccCCCcCH-----HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence 4467889999998886542 0155556677 8999999988755 3344455 889999999998 6773 6666
Q ss_pred ccCCCCCcEEEcccCccccc-CCCC-CCCCC-CCCCccEEEecCCC-CC--CcccccccCCCCCCEEeccCCCCCC-cCC
Q 036876 132 VKHYSKLNQIIHVACKKLIA-KTPN-PTLMP-HLNKLVILILRGSK-SL--KSLPAEIFNLECLTELDLSDCSKLK-RLP 204 (234)
Q Consensus 132 ~~~l~~L~~L~l~~~~~l~~-~lp~-~~~l~-~L~~l~~L~l~~~~-~l--~~lp~~~~~l~~L~~L~l~~c~~l~-~lp 204 (234)
+..+++|++|++++|..++. .++. ++.++ +| +.|++++|. .+ ..+|..++++++|++|++++|..+. ..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L---~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI---TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC---CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC---CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence 78889999999999832553 0344 55566 66 999999974 34 3466677789999999999987443 445
Q ss_pred CcccCCCCCCCcEEecCCCcCCC
Q 036876 205 EILSGIVNDALRIQHIGHLLAVR 227 (234)
Q Consensus 205 ~~~~~~~l~~L~~l~l~~c~~l~ 227 (234)
.. ++.+++|+.|++++|..+.
T Consensus 241 ~~--l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 241 QE--FFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp GG--GGGCTTCCEEECTTCTTCC
T ss_pred HH--HhCCCCCCEeeCCCCCCCC
Confidence 55 8889999999999997553
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=1.9e-12 Score=115.36 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=100.0
Q ss_pred CcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCCCcE
Q 036876 63 KLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSKLNQ 140 (234)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 140 (234)
.|+.|++++|.+. .+|. +..+ +|++|++++|.+..+|..+. +++|+.|++++|+++.+| .++.+++|++
T Consensus 442 ~L~~L~Ls~n~l~-------~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~ 512 (567)
T 1dce_A 442 DVRVLHLAHKDLT-------VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQE 512 (567)
T ss_dssp TCSEEECTTSCCS-------SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCE
T ss_pred CceEEEecCCCCC-------CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcE
Confidence 5899999999887 5665 7788 99999999999999998887 999999999999999998 8999999999
Q ss_pred EEcccCcccccCC--CC-CCCCCCCCCccEEEecCCCCCCcccccc----cCCCCCCEEec
Q 036876 141 IIHVACKKLIAKT--PN-PTLMPHLNKLVILILRGSKSLKSLPAEI----FNLECLTELDL 194 (234)
Q Consensus 141 L~l~~~~~l~~~l--p~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~----~~l~~L~~L~l 194 (234)
|++++|. ++. + |. ++.+++| +.|++++ +.+..+|+.. ..+++|+.|++
T Consensus 513 L~Ls~N~-l~~-~~~p~~l~~l~~L---~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNR-LQQ-SAAIQPLVSCPRL---VLLNLQG-NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSC-CCS-SSTTGGGGGCTTC---CEEECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCC-CCC-CCCcHHHhcCCCC---CEEEecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence 9999998 877 7 66 8888888 9999999 4666666433 34788888864
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=2.5e-11 Score=91.80 Aligned_cols=101 Identities=27% Similarity=0.324 Sum_probs=60.6
Q ss_pred EEEEEeeCCCCCCCCCCc-cC-CCCccEEEecCCcccccccc-ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCcc
Q 036876 92 EVKYLHWHGYPLKSLPSN-LS-AEKLVLLEVPGSSIEQLWDG-VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLV 166 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~ 166 (234)
++++|+++++.+..+|.. +. +.+|++|++++|+++.+|.. ++.+++|++|++++|. ++. +|. ++.+++| +
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~-~~~~~~~~l~~L---~ 103 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQS-LPNGVFDKLTQL---K 103 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTC---C
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccc-cCHHHhhCCccc---C
Confidence 455666666665555543 23 66666777766666666554 4566667777777665 555 544 4445555 7
Q ss_pred EEEecCCCCCCccccc-ccCCCCCCEEeccCCC
Q 036876 167 ILILRGSKSLKSLPAE-IFNLECLTELDLSDCS 198 (234)
Q Consensus 167 ~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~ 198 (234)
.|++++ +.++.+|.. +..+++|+++++++|+
T Consensus 104 ~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 104 ELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp EEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECcC-CcceEeCHHHhcCCcccCEEEecCCC
Confidence 777766 355555543 4556667777776643
No 123
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=2.5e-11 Score=91.84 Aligned_cols=97 Identities=26% Similarity=0.304 Sum_probs=62.5
Q ss_pred EEEeeCCCCCCCCCCccCCCCccEEEecCCccccc-cccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEe
Q 036876 94 KYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQL-WDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILIL 170 (234)
Q Consensus 94 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l 170 (234)
+.++++++.+..+|..+ ..+|++|++++|+++.+ |..++.+++|++|++++|. ++. +|. |+.+++| +.|++
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~-i~~~~~~~l~~L---~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTA-IPTGVFDKLTQL---TQLDL 88 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCC-CCTTTTTTCTTC---CEEEC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCc-cChhHhCCcchh---hEEEC
Confidence 35566666666666544 36677777777777766 3346677777777777776 666 655 4555555 77777
Q ss_pred cCCCCCCccccc-ccCCCCCCEEeccCC
Q 036876 171 RGSKSLKSLPAE-IFNLECLTELDLSDC 197 (234)
Q Consensus 171 ~~~~~l~~lp~~-~~~l~~L~~L~l~~c 197 (234)
++ +.+..+|.. ++.+++|++|+++++
T Consensus 89 ~~-N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 89 ND-NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CS-SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CC-CccceeCHHHhccccCCCEEEeCCC
Confidence 76 456666643 666777777777763
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=1.2e-15 Score=117.91 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=40.7
Q ss_pred hhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccC
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKH 134 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~ 134 (234)
.+..+++|+.|++++|.+. .+| .+..+ +|++|++++|.+..+|..+. +++|++|++++|+++.+| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-------~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-------KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-------CCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCCCCc-------ccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 4555566666666655443 233 33333 45555555555444444333 345555555555555443 3444
Q ss_pred CCCCcEEEcccCc
Q 036876 135 YSKLNQIIHVACK 147 (234)
Q Consensus 135 l~~L~~L~l~~~~ 147 (234)
+++|++|++++|.
T Consensus 114 l~~L~~L~l~~N~ 126 (198)
T 1ds9_A 114 LVNLRVLYMSNNK 126 (198)
T ss_dssp HHHSSEEEESEEE
T ss_pred CCCCCEEECCCCc
Confidence 4555555555554
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=2.1e-13 Score=115.64 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=9.7
Q ss_pred CCCCCcceEEecCCCCC
Q 036876 59 TKMPKLRFLKFYSSSFN 75 (234)
Q Consensus 59 ~~l~~L~~L~l~~~~~~ 75 (234)
..+++|++|++++|.+.
T Consensus 91 ~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp TTCTTCCEEECCSCCCC
T ss_pred hhCCcccEEECCCCcCC
Confidence 45566666666666544
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=3.5e-13 Score=114.33 Aligned_cols=157 Identities=15% Similarity=0.078 Sum_probs=85.0
Q ss_pred hhCCCCCcceEEecCCCCCCCCcccccccCC-------CCcc-EEEEEeeCCCCCCC-----CCCccC-CCCccEEEecC
Q 036876 57 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQD-------LGFV-EVKYLHWHGYPLKS-----LPSNLS-AEKLVLLEVPG 122 (234)
Q Consensus 57 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-------l~~l-~L~~L~l~~~~~~~-----lp~~~~-l~~L~~L~l~~ 122 (234)
.+..+++|+.|++++|.+..... .+|.+ +..+ +|++|++++|.+.. +|..+. +++|++|++++
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~---~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 131 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKD---EIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN 131 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGG---GSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHhCCCccEEeCcccccCcccc---chhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC
Confidence 46789999999999875432110 22323 3555 78888888888765 444454 67788888887
Q ss_pred Ccccc-----ccccccCC---------CCCcEEEcccCcccc-cCCC---C-CCCCCCCCCccEEEecCCCCCC------
Q 036876 123 SSIEQ-----LWDGVKHY---------SKLNQIIHVACKKLI-AKTP---N-PTLMPHLNKLVILILRGSKSLK------ 177 (234)
Q Consensus 123 ~~l~~-----l~~~~~~l---------~~L~~L~l~~~~~l~-~~lp---~-~~~l~~L~~l~~L~l~~~~~l~------ 177 (234)
|.+.. ++..+..+ ++|++|++++|. ++ ..+| . +..+++| +.|++++| .+.
T Consensus 132 n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L---~~L~L~~n-~l~~~g~~~ 206 (386)
T 2ca6_A 132 NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLL---HTVKMVQN-GIRPEGIEH 206 (386)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTC---CEEECCSS-CCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCc---CEEECcCC-CCCHhHHHH
Confidence 77652 22223333 666777777665 32 1022 1 2233333 55555553 333
Q ss_pred cccccccCCCCCCEEeccCCCCC-----CcCCCcccCCCCCCCcEEecCCCc
Q 036876 178 SLPAEIFNLECLTELDLSDCSKL-----KRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 178 ~lp~~~~~l~~L~~L~l~~c~~l-----~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
.+|..+..+++|++|++++|. + ..+|.. +..+++|+.|++++|.
T Consensus 207 l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~--l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 207 LLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIA--LKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHH--GGGCTTCCEEECTTCC
T ss_pred HHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHH--HccCCCcCEEECCCCC
Confidence 122244455555555555532 3 334443 4445555555555543
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.27 E-value=4.1e-11 Score=90.22 Aligned_cols=97 Identities=23% Similarity=0.271 Sum_probs=54.3
Q ss_pred EEEeeCCCCCCCCCCccCCCCccEEEecCCccccc-cccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEe
Q 036876 94 KYLHWHGYPLKSLPSNLSAEKLVLLEVPGSSIEQL-WDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILIL 170 (234)
Q Consensus 94 ~~L~l~~~~~~~lp~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l 170 (234)
+.++++++.+..+|..+ ..++++|++++|+++.+ |..+..+++|++|++++|. ++. +|. |..+++| +.|++
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~-l~~~~f~~l~~L---~~L~L 85 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTV-LPAGVFDKLTQL---TQLSL 85 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCC-CCTTTTTTCTTC---CEEEC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCc-cChhhccCCCCC---CEEEC
Confidence 34555555555555433 35566666666666655 3335566666666666665 555 544 4444444 66666
Q ss_pred cCCCCCCcccc-cccCCCCCCEEeccCC
Q 036876 171 RGSKSLKSLPA-EIFNLECLTELDLSDC 197 (234)
Q Consensus 171 ~~~~~l~~lp~-~~~~l~~L~~L~l~~c 197 (234)
++ +.++.+|. .++.+++|++|+++++
T Consensus 86 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 86 ND-NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CC-CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 66 34555543 3556666666666653
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=1.4e-10 Score=87.60 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=85.5
Q ss_pred ccEEEecCCccccccccccCCCCCcEEEcccCcccccCC-CC-CCCCCCCCCccEEEecCCCCCCccccc-ccCCCCCCE
Q 036876 115 LVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKT-PN-PTLMPHLNKLVILILRGSKSLKSLPAE-IFNLECLTE 191 (234)
Q Consensus 115 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~l-p~-~~~l~~L~~l~~L~l~~~~~l~~lp~~-~~~l~~L~~ 191 (234)
-+.+++++++++.+|.++. .+|++|++++|. ++. + |. |+.+++| +.|++++ +.+..+|.. ++++++|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L---~~L~Ls~-N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITK-LEPGVFDHLVNL---QQLYFNS-NKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCC-CCTTTTTTCTTC---CEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccc-cCHHHhcCCcCC---CEEECCC-CCCCccChhHhCCcchhhE
Confidence 4789999999999998775 899999999998 777 6 44 7777777 9999999 578888865 689999999
Q ss_pred EeccCCCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 192 LDLSDCSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 192 L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
|++++ +.+..+|... +..+++|+.|++++++
T Consensus 86 L~L~~-N~l~~l~~~~-~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 86 LDLND-NHLKSIPRGA-FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp EECCS-SCCCCCCTTT-TTTCTTCSEEECCSSC
T ss_pred EECCC-CccceeCHHH-hccccCCCEEEeCCCC
Confidence 99998 6788888753 7889999999999865
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=2e-10 Score=86.41 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=85.4
Q ss_pred CccEEEecCCccccccccccCCCCCcEEEcccCcccccCC-CC-CCCCCCCCCccEEEecCCCCCCcccc-cccCCCCCC
Q 036876 114 KLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKT-PN-PTLMPHLNKLVILILRGSKSLKSLPA-EIFNLECLT 190 (234)
Q Consensus 114 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~l-p~-~~~l~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~ 190 (234)
..+.+++++++++.+|..+. .+|++|++++|. ++. + |. |+.+.+| +.|++++ +.+..+|. .+.++++|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~-~~~~~~~~l~~L---~~L~Ls~-N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITK-LEPGVFDRLTQL---TRLDLDN-NQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCC-CCTTTTTTCTTC---SEEECCS-SCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCc-cChhhhcCcccC---CEEECCC-CCcCccChhhccCCCCCC
Confidence 46889999999999998774 889999999998 877 7 44 7777777 9999999 57778775 468999999
Q ss_pred EEeccCCCCCCcCCCcccCCCCCCCcEEecCCCc
Q 036876 191 ELDLSDCSKLKRLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 191 ~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
+|++++ +.+..+|+.. +..+++|+.|++++++
T Consensus 82 ~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 82 QLSLND-NQLKSIPRGA-FDNLKSLTHIWLLNNP 113 (170)
T ss_dssp EEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSC
T ss_pred EEECCC-CccCEeCHHH-hcCCCCCCEEEeCCCC
Confidence 999999 6788888742 7889999999998754
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=3e-13 Score=104.43 Aligned_cols=156 Identities=12% Similarity=0.057 Sum_probs=113.0
Q ss_pred CCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecCCccccccccccCCCC
Q 036876 60 KMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPGSSIEQLWDGVKHYSK 137 (234)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~~~l~~l~~~~~~l~~ 137 (234)
....++.++++.+.+.|.......+|..+..+ +|++|++++|.+..+| .+. +++|++|++++|+++.+|..+..+++
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence 34455555555555544211111344466667 8999999999988888 665 89999999999999999887888899
Q ss_pred CcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCcccc--cccCCCCCCEEeccCCCCCCcCCC---------c
Q 036876 138 LNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLPA--EIFNLECLTELDLSDCSKLKRLPE---------I 206 (234)
Q Consensus 138 L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp~--~~~~l~~L~~L~l~~c~~l~~lp~---------~ 206 (234)
|++|++++|. ++. +|.++.+++| +.|++++ +.+..+|. .+..+++|+++++++|.....+|. .
T Consensus 95 L~~L~L~~N~-l~~-l~~~~~l~~L---~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 95 LEELWISYNQ-IAS-LSGIEKLVNL---RVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp CSEEEEEEEE-CCC-HHHHHHHHHS---SEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred CCEEECcCCc-CCc-CCccccCCCC---CEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 9999999997 777 7766666666 9999998 56776664 688899999999998654333332 0
Q ss_pred ccCCCCCCCcEEecCCC
Q 036876 207 LSGIVNDALRIQHIGHL 223 (234)
Q Consensus 207 ~~~~~l~~L~~l~l~~c 223 (234)
+ +..+++|+.++-..+
T Consensus 169 ~-~~~l~~L~~Ld~~~i 184 (198)
T 1ds9_A 169 V-VKRLPNLKKLDGMPV 184 (198)
T ss_dssp H-HHHCSSCSEECCGGG
T ss_pred H-HHhCCCcEEECCccc
Confidence 0 467889998874333
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=3.8e-12 Score=107.11 Aligned_cols=126 Identities=13% Similarity=0.041 Sum_probs=65.3
Q ss_pred EEEEEeeCCCCCCCCCCc-----cC--CCCccEEEecCCccc-----cccccccCCC-CCcEEEcccCcccccCCCC--C
Q 036876 92 EVKYLHWHGYPLKSLPSN-----LS--AEKLVLLEVPGSSIE-----QLWDGVKHYS-KLNQIIHVACKKLIAKTPN--P 156 (234)
Q Consensus 92 ~L~~L~l~~~~~~~lp~~-----~~--l~~L~~L~l~~~~l~-----~l~~~~~~l~-~L~~L~l~~~~~l~~~lp~--~ 156 (234)
+|++|++++|.+...+.. +. ..+|++|++++|+++ .++..+..+. +|++|++++|. ++. .+. +
T Consensus 110 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~-~~~~~l 187 (362)
T 3goz_A 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LAS-KNCAEL 187 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGG-SCHHHH
T ss_pred CccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-Cch-hhHHHH
Confidence 456666666665444321 11 246666666666665 2233334443 66666666665 443 221 1
Q ss_pred ----CCC-CCCCCccEEEecCCCCCCc-----ccccccC-CCCCCEEeccCCCCCCcCCCcc---cCCCCCCCcEEecCC
Q 036876 157 ----TLM-PHLNKLVILILRGSKSLKS-----LPAEIFN-LECLTELDLSDCSKLKRLPEIL---SGIVNDALRIQHIGH 222 (234)
Q Consensus 157 ----~~l-~~L~~l~~L~l~~~~~l~~-----lp~~~~~-l~~L~~L~l~~c~~l~~lp~~~---~~~~l~~L~~l~l~~ 222 (234)
... .+| +.|++++| .++. ++..+.. .++|++|++++| .++..+... .+..+++|+.|++++
T Consensus 188 ~~~l~~~~~~L---~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 188 AKFLASIPASV---TSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp HHHHHTSCTTC---CEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred HHHHHhCCCCC---CEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 122 244 77777764 4444 4444444 346777777763 444433200 035567777777776
Q ss_pred Cc
Q 036876 223 LL 224 (234)
Q Consensus 223 c~ 224 (234)
|.
T Consensus 263 n~ 264 (362)
T 3goz_A 263 DI 264 (362)
T ss_dssp HH
T ss_pred CC
Confidence 65
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.08 E-value=7.2e-12 Score=105.43 Aligned_cols=176 Identities=19% Similarity=0.173 Sum_probs=113.7
Q ss_pred eeeEEEecCCceeeecCc----hhhCCCC-CcceEEecCCCCCCCCcccccccCCCCc-c-EEEEEeeCCCCCCCCCCc-
Q 036876 38 IEGICLDMSKVKEICLNP----NTFTKMP-KLRFLKFYSSSFNGENKCKVSYLQDLGF-V-EVKYLHWHGYPLKSLPSN- 109 (234)
Q Consensus 38 i~~~~l~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~-l-~L~~L~l~~~~~~~lp~~- 109 (234)
++.+ |++.+....... ..|..++ +|+.|++++|.+.+..... +...+.. . +|++|++++|.+...+..
T Consensus 24 L~~L--~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~--l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 24 VTSL--DLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE--LVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CCEE--ECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH--HHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred ceEE--EccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH--HHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 5554 444443333333 6677888 8999999999776421110 1111111 1 689999999997765432
Q ss_pred ----cC-C-CCccEEEecCCcccccccc-----ccCC-CCCcEEEcccCccccc----CCCC-CCCCC-CCCCccEEEec
Q 036876 110 ----LS-A-EKLVLLEVPGSSIEQLWDG-----VKHY-SKLNQIIHVACKKLIA----KTPN-PTLMP-HLNKLVILILR 171 (234)
Q Consensus 110 ----~~-l-~~L~~L~l~~~~l~~l~~~-----~~~l-~~L~~L~l~~~~~l~~----~lp~-~~~l~-~L~~l~~L~l~ 171 (234)
+. . .+|++|++++|+++..+.. +..+ .+|++|++++|. ++. .++. +.... +| +.|+++
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L---~~L~Ls 175 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANV---NSLNLR 175 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTC---CEEECT
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccc---cEeeec
Confidence 22 3 7899999999999866442 3343 589999999997 653 0222 33333 56 999999
Q ss_pred CCCCCCccc-c----cccCC-CCCCEEeccCCCCCCc-----CCCcccCCC-CCCCcEEecCCCcC
Q 036876 172 GSKSLKSLP-A----EIFNL-ECLTELDLSDCSKLKR-----LPEILSGIV-NDALRIQHIGHLLA 225 (234)
Q Consensus 172 ~~~~l~~lp-~----~~~~l-~~L~~L~l~~c~~l~~-----lp~~~~~~~-l~~L~~l~l~~c~~ 225 (234)
+| .++..+ . .+..+ ++|++|++++| .++. ++.. +.. .++|+.|++++|.-
T Consensus 176 ~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~--l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 176 GN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYI--FSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp TS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHH--HHHSCTTCCEEECCSSCC
T ss_pred CC-CCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHH--HhcCCCCceEEECcCCCC
Confidence 96 444333 2 34455 58999999985 5665 5554 444 45999999999853
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=5.4e-09 Score=86.66 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=58.4
Q ss_pred CCCccEEEecCCcccccccc-ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCcc-EEEecCCCCCCccc-ccccCC
Q 036876 112 AEKLVLLEVPGSSIEQLWDG-VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLV-ILILRGSKSLKSLP-AEIFNL 186 (234)
Q Consensus 112 l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~-~L~l~~~~~l~~lp-~~~~~l 186 (234)
+.+|+.++++.|+++.+|.. +.++.+|+.+++.++ ++. ++. |.++.+| + .+.+.+ .+..++ ..|.++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~-I~~~aF~~~~~L---~~~l~l~~--~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKT-IGQRVFSNCGRL---AGTLELPA--SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCE-ECTTTTTTCTTC---CEEEEECT--TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cce-ehHHHhhCChhc---cEEEEEcc--cceEEchhhhhCC
Confidence 45666666666666666554 556666666666654 555 554 5555555 6 666654 455554 456666
Q ss_pred CCCCEEeccCCCCCCcCCCcccCCCCCCCcEEe
Q 036876 187 ECLTELDLSDCSKLKRLPEILSGIVNDALRIQH 219 (234)
Q Consensus 187 ~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~ 219 (234)
++|+.+++++ +.+..++..+ +..+++|+.+.
T Consensus 297 ~~L~~l~l~~-n~i~~I~~~a-F~~~~~L~~ly 327 (329)
T 3sb4_A 297 DNLRYVLATG-DKITTLGDEL-FGNGVPSKLIY 327 (329)
T ss_dssp TTEEEEEECS-SCCCEECTTT-TCTTCCCCEEE
T ss_pred ccCCEEEeCC-CccCccchhh-hcCCcchhhhc
Confidence 6666666655 4566666543 55566666554
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=4.4e-09 Score=87.66 Aligned_cols=94 Identities=28% Similarity=0.262 Sum_probs=64.6
Q ss_pred EeeCCC-CCCCCCCccC-CCCccEEEecC-Cccccccc-cccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEE
Q 036876 96 LHWHGY-PLKSLPSNLS-AEKLVLLEVPG-SSIEQLWD-GVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILI 169 (234)
Q Consensus 96 L~l~~~-~~~~lp~~~~-l~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~ 169 (234)
++.+++ .+..+|. +. +.+|+.|+|++ |+++.+|. .++.+.+|++|+|++|. ++. ++. |+.+++| +.|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~-~~~~~~~~l~~L---~~L~ 86 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRF-VAPDAFHFTPRL---SRLN 86 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCE-ECTTGGGSCSCC---CEEE
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cce-eCHHHhcCCcCC---CEEe
Confidence 466666 6777777 65 67788888875 77777764 47777888888888776 665 543 6666666 8888
Q ss_pred ecCCCCCCccccc-ccCCCCCCEEeccCC
Q 036876 170 LRGSKSLKSLPAE-IFNLECLTELDLSDC 197 (234)
Q Consensus 170 l~~~~~l~~lp~~-~~~l~~L~~L~l~~c 197 (234)
|++ +.+..+|.. +..++ |+.|++.++
T Consensus 87 l~~-N~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 87 LSF-NALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CCS-SCCSCCCSTTTCSCC-CCEEECCSS
T ss_pred CCC-CccceeCHHHcccCC-ceEEEeeCC
Confidence 877 566666643 33344 778887774
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.91 E-value=9.8e-12 Score=107.40 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=19.2
Q ss_pred CCCCCEEeccCCCCCC-----cCCCcccCCCCCCCcEEecCCCc
Q 036876 186 LECLTELDLSDCSKLK-----RLPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 186 l~~L~~L~l~~c~~l~-----~lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
.++|++|++++| .+. .+|.. +..+++|+++++++|.
T Consensus 369 ~~~L~~L~L~~n-~i~~~~~~~l~~~--l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 369 GSVLRVLWLADC-DVSDSSCSSLAAT--LLANHSLRELDLSNNC 409 (461)
T ss_dssp TCCCCEEECTTS-CCCHHHHHHHHHH--HHHCCCCCEEECCSSS
T ss_pred CCceEEEECCCC-CCChhhHHHHHHH--HHhCCCccEEECCCCC
Confidence 345566666554 233 44444 4455666666666653
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.90 E-value=1.7e-11 Score=105.85 Aligned_cols=19 Identities=42% Similarity=0.550 Sum_probs=9.1
Q ss_pred ccccccCCCCCCEEeccCC
Q 036876 179 LPAEIFNLECLTELDLSDC 197 (234)
Q Consensus 179 lp~~~~~l~~L~~L~l~~c 197 (234)
+|..+..+++|+++++++|
T Consensus 390 l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHhCCCccEEECCCC
Confidence 4444444455555555543
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=7.5e-09 Score=86.23 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=77.9
Q ss_pred eEEecCC-CCCCCCcccccccCCCCcc-EEEEEeeCC-CCCCCCCC-ccC-CCCccEEEecCCccccccc-cccCCCCCc
Q 036876 66 FLKFYSS-SFNGENKCKVSYLQDLGFV-EVKYLHWHG-YPLKSLPS-NLS-AEKLVLLEVPGSSIEQLWD-GVKHYSKLN 139 (234)
Q Consensus 66 ~L~l~~~-~~~~~~~~~~~~~~~l~~l-~L~~L~l~~-~~~~~lp~-~~~-l~~L~~L~l~~~~l~~l~~-~~~~l~~L~ 139 (234)
.++.+++ .+. .+|. +..+ +|++|++++ |.+..+|+ .+. +.+|++|+|++|+++.++. .+.++++|+
T Consensus 12 ~v~~~~~n~l~-------~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGALD-------SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp CEECCSSCCCT-------TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEEcCCCCCCC-------ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 4577776 666 6888 8888 999999996 99998885 466 9999999999999998766 478999999
Q ss_pred EEEcccCcccccCCCC--CCCCCCCCCccEEEecCCC
Q 036876 140 QIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSK 174 (234)
Q Consensus 140 ~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~ 174 (234)
+|+|++|. ++. +|. |..+. | +.|++++|.
T Consensus 84 ~L~l~~N~-l~~-~~~~~~~~~~-L---~~l~l~~N~ 114 (347)
T 2ifg_A 84 RLNLSFNA-LES-LSWKTVQGLS-L---QELVLSGNP 114 (347)
T ss_dssp EEECCSSC-CSC-CCSTTTCSCC-C---CEEECCSSC
T ss_pred EEeCCCCc-cce-eCHHHcccCC-c---eEEEeeCCC
Confidence 99999998 888 876 44443 6 999999854
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.86 E-value=3e-10 Score=101.04 Aligned_cols=136 Identities=18% Similarity=0.090 Sum_probs=79.9
Q ss_pred CCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCC-----CccC-CCCccEEEecCCcccccccc
Q 036876 59 TKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLP-----SNLS-AEKLVLLEVPGSSIEQLWDG 131 (234)
Q Consensus 59 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp-----~~~~-l~~L~~L~l~~~~l~~l~~~ 131 (234)
..+++|+.|++++|.+.+.... .++..+..+ +|++|+++++.+..+. ..+. +++|+.|++++|.+..+|..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~--~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~ 238 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGK--WLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSH--HHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred hhCCCCCEEECccccccCcchh--HHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH
Confidence 3678888888888854321100 022222334 7888888887765332 2233 68888888888888877777
Q ss_pred ccCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEeccCCC
Q 036876 132 VKHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELDLSDCS 198 (234)
Q Consensus 132 ~~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~ 198 (234)
+..+++|++++++.+..... .+. +..+..+++|+.+++++ .....+|..+..+++|++|++++|.
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~l~~-~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIG-MPEKYMNLVFPRKLCRLGLSY-MGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTT-CTTSSSCCCCCTTCCEEEETT-CCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred HhhhhHHHhhcccccccccc-hHHHHHHhhccccccccCccc-cchhHHHHHHhhcCCCcEEecCCCc
Confidence 77788888888875432211 111 22223333336666665 3444555556666666667666654
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=4.1e-08 Score=81.32 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=106.3
Q ss_pred ecCchhhCC--------CCCcceEEecCCCCCCCCccccccc-CCCCcc-EEEEEeeCCCCCCCCCCc-cC-CCCccEEE
Q 036876 52 CLNPNTFTK--------MPKLRFLKFYSSSFNGENKCKVSYL-QDLGFV-EVKYLHWHGYPLKSLPSN-LS-AEKLVLLE 119 (234)
Q Consensus 52 ~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l-~L~~L~l~~~~~~~lp~~-~~-l~~L~~L~ 119 (234)
.++...|.+ |++|+.+.+.. .+. .++ ..+..+ +|+.++++.+.+..+++. |. +.++..+.
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-------~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-------NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCC-------EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-ccc-------chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 455667777 88888888887 444 444 347777 888888888876665543 33 44454444
Q ss_pred ecCCcc-------c--------------------cccc----------c-----------------c-cCCCCCcEEEcc
Q 036876 120 VPGSSI-------E--------------------QLWD----------G-----------------V-KHYSKLNQIIHV 144 (234)
Q Consensus 120 l~~~~l-------~--------------------~l~~----------~-----------------~-~~l~~L~~L~l~ 144 (234)
...... . .++. . + ..+.+|+.++++
T Consensus 155 ~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 155 LGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp TTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECT
T ss_pred CcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECC
Confidence 333110 0 0000 0 0 026899999999
Q ss_pred cCcccccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCC-EEeccCCCCCCcCCCcccCCCCCCCcEEec
Q 036876 145 ACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLT-ELDLSDCSKLKRLPEILSGIVNDALRIQHI 220 (234)
Q Consensus 145 ~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~-~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l 220 (234)
+|. ++. +|. |.++.+| +.+++.++ +..++ ..|.++++|+ .+++.+ .++.++..+ +..+++|+.+++
T Consensus 235 ~n~-i~~-I~~~aF~~~~~L---~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a-F~~c~~L~~l~l 304 (329)
T 3sb4_A 235 KTN-ATT-IPDFTFAQKKYL---LKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA-FMGCDNLRYVLA 304 (329)
T ss_dssp TBC-CCE-ECTTTTTTCTTC---CEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT-TTTCTTEEEEEE
T ss_pred CCC-cce-ecHhhhhCCCCC---CEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh-hhCCccCCEEEe
Confidence 987 888 887 7777777 99999873 88887 4689999999 999986 678888654 889999999998
Q ss_pred CC
Q 036876 221 GH 222 (234)
Q Consensus 221 ~~ 222 (234)
++
T Consensus 305 ~~ 306 (329)
T 3sb4_A 305 TG 306 (329)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.66 E-value=1.5e-09 Score=96.64 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=35.9
Q ss_pred hCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCCccC-CCCccEEEecC
Q 036876 58 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPSNLS-AEKLVLLEVPG 122 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~~~~-l~~L~~L~l~~ 122 (234)
+..+++|+.|++++|.+.+.... .++..+..+ +|++|++++|.+..+|..+. +++|++|+++.
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~--~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPK--DLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHH--HHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred HhcCCCccEEEeeccCCCccCHH--HHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 34678888888888866521110 222223334 67777777776555554444 55666666653
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.64 E-value=1.1e-09 Score=97.51 Aligned_cols=124 Identities=18% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCCCcceEEecCCCCCCCCcccccccCCCC-cc-EEEEEeeCCCC-CCC--CCCccC-CCCccEEEecCCcccc-----c
Q 036876 60 KMPKLRFLKFYSSSFNGENKCKVSYLQDLG-FV-EVKYLHWHGYP-LKS--LPSNLS-AEKLVLLEVPGSSIEQ-----L 128 (234)
Q Consensus 60 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l-~L~~L~l~~~~-~~~--lp~~~~-l~~L~~L~l~~~~l~~-----l 128 (234)
.+++|+.|++++|.+.+ ..+..+. .+ +|++|++++|. +.. ++.... +++|++|++++|.++. +
T Consensus 103 ~~~~L~~L~L~~~~~~~------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTD------DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HCTTCCEEEEESCBCCH------HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred hCCCCCeEEeeCcEEcH------HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 46677777777665432 1111221 23 56666666552 222 222222 5666666666665443 2
Q ss_pred cccccCCCCCcEEEcccCc-ccc--cCCCC-CCCCCCCCCccEEEecCCCCCCcccccccCCCCCCEEe
Q 036876 129 WDGVKHYSKLNQIIHVACK-KLI--AKTPN-PTLMPHLNKLVILILRGSKSLKSLPAEIFNLECLTELD 193 (234)
Q Consensus 129 ~~~~~~l~~L~~L~l~~~~-~l~--~~lp~-~~~l~~L~~l~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 193 (234)
+.-...+++|++|++++|. .+. . ++. +..+++| +.|++++|..+..+|..+..+++|++++
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~l~~~~~~L---~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSA-LERLVTRCPNL---KSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHH-HHHHHHHCTTC---CEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHH-HHHHHHhCCCC---cEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 2222345566666666653 010 0 111 1122344 6666666544333443344444444444
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.57 E-value=9.6e-10 Score=97.78 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=38.1
Q ss_pred CCCCcceEEecCCC-CCCCCcccccccCCCCcc-EEEEEeeCCCCCCC-----CCCccC-CCCccEEEecCCc--cc--c
Q 036876 60 KMPKLRFLKFYSSS-FNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKS-----LPSNLS-AEKLVLLEVPGSS--IE--Q 127 (234)
Q Consensus 60 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~-----lp~~~~-l~~L~~L~l~~~~--l~--~ 127 (234)
.+++|+.|++++|. +.. ..++.....+ +|++|++++|.+.. ++.... +++|+.|++++|. +. .
T Consensus 128 ~~~~L~~L~L~~~~~~~~-----~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFST-----DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202 (594)
T ss_dssp HCTTCCEEEEESCEEEEH-----HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred hCCCCcEEeCCCcCCCCH-----HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence 46677777777662 110 0012222233 56666666655322 111112 4566666666654 11 1
Q ss_pred ccccccCCCCCcEEEcccCc
Q 036876 128 LWDGVKHYSKLNQIIHVACK 147 (234)
Q Consensus 128 l~~~~~~l~~L~~L~l~~~~ 147 (234)
++.-+..+++|++|++++|.
T Consensus 203 l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTS
T ss_pred HHHHHHhCCCCcEEecCCCC
Confidence 11112334566666666553
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.46 E-value=4.1e-06 Score=71.36 Aligned_cols=153 Identities=10% Similarity=0.077 Sum_probs=77.7
Q ss_pred ecCchhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCCC-ccC-CCCccEEEecC------
Q 036876 52 CLNPNTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLPS-NLS-AEKLVLLEVPG------ 122 (234)
Q Consensus 52 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp~-~~~-l~~L~~L~l~~------ 122 (234)
.+...+|.+|++|+.+++..|.+. .++...-.. +|+.+.+..+ +..++. .|. +.+|+.+.+..
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n~l~-------~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~ 241 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKTKIT-------KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIG 241 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTSCCS-------EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEEC
T ss_pred EehHHHhhCcccCCeeecCCCcce-------EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcc
Confidence 344567888888888888776544 333221112 4444444322 222221 122 34444444433
Q ss_pred ---------------Cccccccc-cccCCCCCcEEEcccCcccc-----cCCCC--CCCCCCCCCccEEEecCCCCCCcc
Q 036876 123 ---------------SSIEQLWD-GVKHYSKLNQIIHVACKKLI-----AKTPN--PTLMPHLNKLVILILRGSKSLKSL 179 (234)
Q Consensus 123 ---------------~~l~~l~~-~~~~l~~L~~L~l~~~~~l~-----~~lp~--~~~l~~L~~l~~L~l~~~~~l~~l 179 (234)
+.++.++. .+.++.+|+.+.+.++. .. . ++. |.++.+| +.+.+.+ .+..+
T Consensus 242 ~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~-I~~~aF~~c~~L---~~l~l~~--~i~~I 314 (401)
T 4fdw_A 242 QEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGST-FNDDPEAM-IHPYCLEGCPKL---ARFEIPE--SIRIL 314 (401)
T ss_dssp TTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCE-ECTTTTTTCTTC---CEECCCT--TCCEE
T ss_pred ccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCcc-ccCCcccE-ECHHHhhCCccC---CeEEeCC--ceEEE
Confidence 22333322 24455666666665543 22 2 333 4444444 6666653 35555
Q ss_pred c-ccccCCCCCCEEeccCCCCCCcCCCcccCCCCCCCcEEecCCC
Q 036876 180 P-AEIFNLECLTELDLSDCSKLKRLPEILSGIVNDALRIQHIGHL 223 (234)
Q Consensus 180 p-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~c 223 (234)
+ ..|.++++|+.+.+.. .+..++..+ +..+ +|+.+.+.++
T Consensus 315 ~~~aF~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT 355 (401)
T ss_dssp CTTTTTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS
T ss_pred hhhhhcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC
Confidence 5 3466667777777753 355665543 5566 7777777654
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=6.6e-09 Score=87.80 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=64.5
Q ss_pred CCcceEEecCCCCCCCCcccccccCCC-Ccc-EEEEEeeCCCCCCCCCC-----cc-C-CCCccEEEecCCcccc-----
Q 036876 62 PKLRFLKFYSSSFNGENKCKVSYLQDL-GFV-EVKYLHWHGYPLKSLPS-----NL-S-AEKLVLLEVPGSSIEQ----- 127 (234)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~l-~L~~L~l~~~~~~~lp~-----~~-~-l~~L~~L~l~~~~l~~----- 127 (234)
++|+.|++++|.+.. .-...+ ..+ ++++|++++|.+...+. .+ . .++|+.|++++|.++.
T Consensus 101 ~~L~~L~Ls~n~l~~------~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 174 (372)
T 3un9_A 101 HALDEVNLASCQLDP------AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAV 174 (372)
T ss_dssp SCEEEEECTTCCCCH------HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHH
T ss_pred CCceEEEecCCCCCH------HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHH
Confidence 567777777765431 111111 122 56777777766543211 11 1 3567777777776653
Q ss_pred ccccccCCCCCcEEEcccCccccc----CCCC-CCCCCCCCCccEEEecCCCCCCc-----ccccccCCCCCCEEeccCC
Q 036876 128 LWDGVKHYSKLNQIIHVACKKLIA----KTPN-PTLMPHLNKLVILILRGSKSLKS-----LPAEIFNLECLTELDLSDC 197 (234)
Q Consensus 128 l~~~~~~l~~L~~L~l~~~~~l~~----~lp~-~~~l~~L~~l~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c 197 (234)
++..+...++|++|++++|. ++. .++. +...++| +.|++++| .++. ++..+...++|++|++++|
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L---~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQL---QELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCC---CEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCc---CeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 33334556667777777766 432 0112 2333444 77777764 3332 2233444566777777764
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.40 E-value=1.3e-08 Score=85.92 Aligned_cols=154 Identities=15% Similarity=0.049 Sum_probs=102.8
Q ss_pred CCCcceEEecCCCCCCCCcccccccCCCC-cc-EEEEEeeCCCCCCCCC--CccC-CCCccEEEecCCcccccc-----c
Q 036876 61 MPKLRFLKFYSSSFNGENKCKVSYLQDLG-FV-EVKYLHWHGYPLKSLP--SNLS-AEKLVLLEVPGSSIEQLW-----D 130 (234)
Q Consensus 61 l~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l-~L~~L~l~~~~~~~lp--~~~~-l~~L~~L~l~~~~l~~l~-----~ 130 (234)
+++|+.|++++|.+...... .+...+. .. +|++|++++|.+.... .... +.+|+.|++++|+++... .
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCT--VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHH--HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHH--HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 46789999999976531111 1222222 22 7999999999865321 1122 578999999999987432 2
Q ss_pred cc-cCCCCCcEEEcccCccccc----CCCC-CCCCCCCCCccEEEecCCCCCCc-----ccccccCCCCCCEEeccCCCC
Q 036876 131 GV-KHYSKLNQIIHVACKKLIA----KTPN-PTLMPHLNKLVILILRGSKSLKS-----LPAEIFNLECLTELDLSDCSK 199 (234)
Q Consensus 131 ~~-~~l~~L~~L~l~~~~~l~~----~lp~-~~~l~~L~~l~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~ 199 (234)
.+ ....+|++|++++|. ++. .++. +...++| +.|++++| .++. ++..+...++|++|++++| .
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L---~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~ 222 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSV---THLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-G 222 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSC---CEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-C
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCc---CEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-C
Confidence 22 246789999999998 543 0222 3445556 99999996 4543 3456777889999999996 4
Q ss_pred CCc-----CCCcccCCCCCCCcEEecCCCc
Q 036876 200 LKR-----LPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 200 l~~-----lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
++. ++.. +...++|++|++++|.
T Consensus 223 i~~~g~~~l~~~--L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 223 AGDTAALALARA--AREHPSLELLHLYFNE 250 (372)
T ss_dssp CCHHHHHHHHHH--HHHCSSCCEEECTTSS
T ss_pred CCHHHHHHHHHH--HHhCCCCCEEeccCCC
Confidence 543 3332 3456899999999985
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=2.1e-07 Score=70.02 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=44.4
Q ss_pred CccEEEecCCcccc-ccccccCCCCCcEEEcccCcccccCCC--CCCCCCC-CCCccEEEecCCCCCCccc-ccccCCCC
Q 036876 114 KLVLLEVPGSSIEQ-LWDGVKHYSKLNQIIHVACKKLIAKTP--NPTLMPH-LNKLVILILRGSKSLKSLP-AEIFNLEC 188 (234)
Q Consensus 114 ~L~~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~~~~l~~~lp--~~~~l~~-L~~l~~L~l~~~~~l~~lp-~~~~~l~~ 188 (234)
.|+.|+++++.++. -...+..+++|++|++++|..+++ -- .++.+.+ .++|+.|++++|..++.-. ..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 34444444444331 112345566777777777765543 11 1222210 0122777777776665422 23455666
Q ss_pred CCEEeccCCCCCCc
Q 036876 189 LTELDLSDCSKLKR 202 (234)
Q Consensus 189 L~~L~l~~c~~l~~ 202 (234)
|++|++++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777665543
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=1.8e-07 Score=70.40 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=67.6
Q ss_pred ccccccCCCCCcEEEcccCccccc-CCCCCCCCCCCCCccEEEecCCCCCCccc-ccccCC----CCCCEEeccCCCCCC
Q 036876 128 LWDGVKHYSKLNQIIHVACKKLIA-KTPNPTLMPHLNKLVILILRGSKSLKSLP-AEIFNL----ECLTELDLSDCSKLK 201 (234)
Q Consensus 128 l~~~~~~l~~L~~L~l~~~~~l~~-~lp~~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l----~~L~~L~l~~c~~l~ 201 (234)
+|.....-.+|+.|++++|. ++. .+..+.++++| +.|++++|..++.-. ..+..+ ++|++|++++|..++
T Consensus 53 LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L---~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYV---EKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCC---CEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred CCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCC---CEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 34433223579999999998 654 12224455555 999999998887532 234443 469999999998876
Q ss_pred c--CCCcccCCCCCCCcEEecCCCcCCChhh
Q 036876 202 R--LPEILSGIVNDALRIQHIGHLLAVRWKE 230 (234)
Q Consensus 202 ~--lp~~~~~~~l~~L~~l~l~~c~~l~~~~ 230 (234)
+ +-. +..+++|+.|++++|+.++-..
T Consensus 129 D~Gl~~---L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 129 DKGIIA---LHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp HHHHHH---GGGCTTCCEEEEESCTTCCCHH
T ss_pred HHHHHH---HhcCCCCCEEECCCCCCCCchH
Confidence 5 322 5678999999999999997544
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=1.6e-07 Score=78.94 Aligned_cols=187 Identities=11% Similarity=0.040 Sum_probs=106.7
Q ss_pred CcCccceeeEEEecCCceeeec------CchhhCCCCCcceEEecCCCCCCCC--cccc-cccCCCCcc-EEEEEeeCCC
Q 036876 32 NTGTKKIEGICLDMSKVKEICL------NPNTFTKMPKLRFLKFYSSSFNGEN--KCKV-SYLQDLGFV-EVKYLHWHGY 101 (234)
Q Consensus 32 ~~~~~~i~~~~l~~~~~~~~~~------~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~-~~~~~l~~l-~L~~L~l~~~ 101 (234)
......+..+.++......-.. -..+..++++|+.|.+......... .... .+...+..+ +|+.|++.++
T Consensus 103 ~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 103 DKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp CTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred CCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 3345567777777543210000 0122345789999998765321100 0000 111122233 7888888877
Q ss_pred CCCCCCCccCCCCccEEEecCCcccc-ccccc--cCCCCCcEEEcccCc-------ccccCCCC-CCCCCCCCCccEEEe
Q 036876 102 PLKSLPSNLSAEKLVLLEVPGSSIEQ-LWDGV--KHYSKLNQIIHVACK-------KLIAKTPN-PTLMPHLNKLVILIL 170 (234)
Q Consensus 102 ~~~~lp~~~~l~~L~~L~l~~~~l~~-l~~~~--~~l~~L~~L~l~~~~-------~l~~~lp~-~~~l~~L~~l~~L~l 170 (234)
.-..+++ +..++|+.|++..+.+.. ....+ ..+++|++|+|+.+. .+.. +.. +.. ..+|+|+.|++
T Consensus 183 ~~l~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~-l~~~l~~-~~~p~Lr~L~L 259 (362)
T 2ra8_A 183 NNLSIGK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV-FRPLFSK-DRFPNLKWLGI 259 (362)
T ss_dssp BTCBCCS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG-TGGGSCT-TTCTTCCEEEE
T ss_pred CCceecc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH-HHHHHhc-CCCCCcCEEeC
Confidence 4233444 458899999999887652 11223 368999999986421 1222 222 221 12344499999
Q ss_pred cCCCCCCcccccc---cCCCCCCEEeccCCCCCCc-----CCCcccCCCCCCCcEEecCCCc
Q 036876 171 RGSKSLKSLPAEI---FNLECLTELDLSDCSKLKR-----LPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 171 ~~~~~l~~lp~~~---~~l~~L~~L~l~~c~~l~~-----lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
.+|......+..+ ..+++|++|+++. +.++. ++.. +..+++|+.|++++|.
T Consensus 260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~--L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDH--VDKIKHLKFINMKYNY 318 (362)
T ss_dssp ESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTT--HHHHTTCSEEECCSBB
T ss_pred CCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhh--cccCCcceEEECCCCc
Confidence 9865433222212 3578899999987 45654 4443 4567899999999884
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.27 E-value=1.3e-05 Score=68.21 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=35.0
Q ss_pred CCcc-EEEEEeeCCCCCCCCCCcc-CCCCccEEEecCCcccccccc-ccCCCCCcEEEccc
Q 036876 88 LGFV-EVKYLHWHGYPLKSLPSNL-SAEKLVLLEVPGSSIEQLWDG-VKHYSKLNQIIHVA 145 (234)
Q Consensus 88 l~~l-~L~~L~l~~~~~~~lp~~~-~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~ 145 (234)
+..+ +|+.+++..+.+..++... ...+|+.+.+..+ ++.++.. +.++.+|+.+++..
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 4444 6777777777666666443 3567777777633 5554433 55666777777654
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=9.6e-06 Score=65.13 Aligned_cols=14 Identities=7% Similarity=0.026 Sum_probs=7.3
Q ss_pred CCCCCcEEEcccCc
Q 036876 134 HYSKLNQIIHVACK 147 (234)
Q Consensus 134 ~l~~L~~L~l~~~~ 147 (234)
++++|++|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~ 181 (267)
T 3rw6_A 168 NIPELLSLNLSNNR 181 (267)
T ss_dssp HCTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCC
Confidence 34455555555554
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.67 E-value=1.8e-05 Score=66.36 Aligned_cols=132 Identities=14% Similarity=0.047 Sum_probs=81.5
Q ss_pred hhhCCCCCcceEEecCCCCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCC-Ccc---CCCCccEEEecCC--c----
Q 036876 56 NTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLP-SNL---SAEKLVLLEVPGS--S---- 124 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp-~~~---~l~~L~~L~l~~~--~---- 124 (234)
..+..+|+|+.|.++++.-. .++. +. . +|+.|++..+.+..-. ..+ .+++|+.|+|+.+ .
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-------~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-------SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-------BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred HHHhcCCCCcEEEEeCCCCc-------eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence 44567899999999987211 3333 33 4 8899998876643210 011 3789999998632 1
Q ss_pred --cccccccc--cCCCCCcEEEcccCcccccCCCC-CCCCCCCCCccEEEecCCCCCCc-----ccccccCCCCCCEEec
Q 036876 125 --IEQLWDGV--KHYSKLNQIIHVACKKLIAKTPN-PTLMPHLNKLVILILRGSKSLKS-----LPAEIFNLECLTELDL 194 (234)
Q Consensus 125 --l~~l~~~~--~~l~~L~~L~l~~~~~l~~~lp~-~~~l~~L~~l~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l 194 (234)
+..+...+ ..+++|++|++.+|..... .+. +.....+++|+.|+++. +.+.. ++..+..+++|+.|++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~-~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV-VVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHH-HHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchH-HHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEEC
Confidence 22222222 3589999999998873222 211 11112234449999987 45654 3444567899999999
Q ss_pred cCCC
Q 036876 195 SDCS 198 (234)
Q Consensus 195 ~~c~ 198 (234)
++|.
T Consensus 315 ~~n~ 318 (362)
T 2ra8_A 315 KYNY 318 (362)
T ss_dssp CSBB
T ss_pred CCCc
Confidence 9863
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.39 E-value=2.8e-05 Score=58.87 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=48.1
Q ss_pred CCCccEEEecCC-cccc-----ccccccCCCCCcEEEcccCccccc----CCCC-CCCCCCCCCccEEEecCCCCCCc--
Q 036876 112 AEKLVLLEVPGS-SIEQ-----LWDGVKHYSKLNQIIHVACKKLIA----KTPN-PTLMPHLNKLVILILRGSKSLKS-- 178 (234)
Q Consensus 112 l~~L~~L~l~~~-~l~~-----l~~~~~~l~~L~~L~l~~~~~l~~----~lp~-~~~l~~L~~l~~L~l~~~~~l~~-- 178 (234)
.+.|++|++++| .+.. +...+...++|++|++++|. +.. .+.. +...++| +.|++++| .++.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L---~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTL---KSLNVESN-FISGSG 109 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSC---CEEECCSS-CCCHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCc---CEEECcCC-cCCHHH
Confidence 345555555555 4441 23334445556666666665 321 0111 1112233 66666653 3332
Q ss_pred ---ccccccCCCCCCEEec--cCCCCCCc-----CCCcccCCCCCCCcEEecCCCc
Q 036876 179 ---LPAEIFNLECLTELDL--SDCSKLKR-----LPEILSGIVNDALRIQHIGHLL 224 (234)
Q Consensus 179 ---lp~~~~~l~~L~~L~l--~~c~~l~~-----lp~~~~~~~l~~L~~l~l~~c~ 224 (234)
+...+...++|++|++ ++ +.++. +... +...++|+.|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~--L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANM--LEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHH--HHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHH--HHhCCCcCEEeccCCC
Confidence 2334555556666666 44 33332 2222 2334566666666553
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.37 E-value=0.0001 Score=59.16 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=58.8
Q ss_pred CCCccEEEecCCcccccc---ccccCCCCCcEEEcccCcccccCCCCCCCCCCCCCccEEEecCCCCCCccc-------c
Q 036876 112 AEKLVLLEVPGSSIEQLW---DGVKHYSKLNQIIHVACKKLIAKTPNPTLMPHLNKLVILILRGSKSLKSLP-------A 181 (234)
Q Consensus 112 l~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~~~~l~~~lp~~~~l~~L~~l~~L~l~~~~~l~~lp-------~ 181 (234)
+++|+.|++++|+++.++ ..+..+++|++|+|++|. ++. +..+..+..+ +|+.|++++|..-..+| .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~-~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKS-ERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCS-GGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCC-chhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 689999999999998764 446689999999999998 776 6545555533 44999999965433344 2
Q ss_pred cccCCCCCCEEe
Q 036876 182 EIFNLECLTELD 193 (234)
Q Consensus 182 ~~~~l~~L~~L~ 193 (234)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 366788888886
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.32 E-value=1.6e-05 Score=60.15 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=14.9
Q ss_pred hhhCCCCCcceEEecCC-CCC
Q 036876 56 NTFTKMPKLRFLKFYSS-SFN 75 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~-~~~ 75 (234)
..+...++|+.|++++| .+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCC
T ss_pred HHHhcCCCCCEEEecCCCCCC
Confidence 34667888899999888 654
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.09 E-value=0.011 Score=49.58 Aligned_cols=79 Identities=10% Similarity=0.009 Sum_probs=51.8
Q ss_pred ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccCCCCCCcCCCccc
Q 036876 132 VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKLKRLPEILS 208 (234)
Q Consensus 132 ~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 208 (234)
+....+|+.+.+..+ ++. ++. |.+..+| +.+.+.+ .++.++ .+|.++++|+.+.+.. .++.++..+
T Consensus 293 F~~~~~L~~i~l~~~--i~~-I~~~aF~~c~~L---~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~a- 361 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKF-IGEEAFESCTSL---VSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANA- 361 (394)
T ss_dssp TTTCTTCCEEEECTT--CCE-ECTTTTTTCTTC---CEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTT-
T ss_pred ccccccccccccccc--cce-echhhhcCCCCC---CEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHH-
Confidence 344566666666543 555 654 5555556 8877754 466665 4577888888888865 367777654
Q ss_pred CCCCCCCcEEecC
Q 036876 209 GIVNDALRIQHIG 221 (234)
Q Consensus 209 ~~~l~~L~~l~l~ 221 (234)
+..+++|+.+++.
T Consensus 362 F~~C~~L~~i~lp 374 (394)
T 4fs7_A 362 FQGCINLKKVELP 374 (394)
T ss_dssp BTTCTTCCEEEEE
T ss_pred hhCCCCCCEEEEC
Confidence 7777888888763
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.96 E-value=0.0055 Score=51.54 Aligned_cols=94 Identities=11% Similarity=0.011 Sum_probs=67.4
Q ss_pred CCCccEEEecCCccccccc-cccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCC
Q 036876 112 AEKLVLLEVPGSSIEQLWD-GVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLE 187 (234)
Q Consensus 112 l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~ 187 (234)
+.+|+.+.+..+ ++.++. .+.++.+|+.+++..+ ++. ++. |.+..+| +.+.+.. .+..++ .+|.+++
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~-I~~~aF~~c~~L---~~i~lp~--~l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEE-IGKRSFRGCTSL---SNINFPL--SLRKIGANAFQGCI 366 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCE-ECTTTTTTCTTC---CEECCCT--TCCEECTTTBTTCT
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccE-EhHHhccCCCCC---CEEEECc--cccEehHHHhhCCC
Confidence 778888888754 555544 4778899999999744 777 776 7676777 9999975 377776 4699999
Q ss_pred CCCEEeccCCCCCCcCCCcccCCCCCCCcEE
Q 036876 188 CLTELDLSDCSKLKRLPEILSGIVNDALRIQ 218 (234)
Q Consensus 188 ~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l 218 (234)
+|+.+++.. .++.+... +..+++|+.+
T Consensus 367 ~L~~i~lp~--~~~~~~~~--F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPK--RLEQYRYD--FEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEG--GGGGGGGG--BCTTCEEEEE
T ss_pred CCCEEEECC--CCEEhhhe--ecCCCCCcEE
Confidence 999999875 34444444 5555555543
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.83 E-value=0.018 Score=47.92 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCCccEEEecCCccccccc-cccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCC
Q 036876 112 AEKLVLLEVPGSSIEQLWD-GVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLE 187 (234)
Q Consensus 112 l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~ 187 (234)
+..|+.+.+..+ ++.+.. .+.+..+|+.+.+..+ ++. ++. |.+..+| +.+.+.+ +.++.++ ..|.+++
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~-i~~~aF~~c~~L---~~i~l~~-~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKT-VPYLLCSGCSNL---TKVVMDN-SAIETLEPRVFMDCV 310 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSE-ECTTTTTTCTTC---CEEEECC-TTCCEECTTTTTTCT
T ss_pred CccceEEEcCCC-ccEeCccccceeehhcccccccc--cee-cccccccccccc---ccccccc-cccceehhhhhcCCC
Confidence 556666666544 333322 3455667777776533 555 554 5555566 7777765 4566665 3577777
Q ss_pred CCCEEeccCCCCCCcCCCcccCCCCCCCcEEec
Q 036876 188 CLTELDLSDCSKLKRLPEILSGIVNDALRIQHI 220 (234)
Q Consensus 188 ~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l 220 (234)
+|+.+.+.. .++.++..+ +..+++|+.+.+
T Consensus 311 ~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~i 340 (379)
T 4h09_A 311 KLSSVTLPT--ALKTIQVYA-FKNCKALSTISY 340 (379)
T ss_dssp TCCEEECCT--TCCEECTTT-TTTCTTCCCCCC
T ss_pred CCCEEEcCc--cccEEHHHH-hhCCCCCCEEEE
Confidence 788777753 356666543 556666666654
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.73 E-value=0.0032 Score=44.64 Aligned_cols=52 Identities=19% Similarity=0.186 Sum_probs=33.2
Q ss_pred EEeeCCCCCC--CCCCccCCCCccEEEecCCcccccccc-ccCCCCCcEEEcccCc
Q 036876 95 YLHWHGYPLK--SLPSNLSAEKLVLLEVPGSSIEQLWDG-VKHYSKLNQIIHVACK 147 (234)
Q Consensus 95 ~L~l~~~~~~--~lp~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~ 147 (234)
.++.++..+. .+|..+ ..+++.|+|++|+++.+|.+ +..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3455555555 666432 45677777777777777655 4566777777777765
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.59 E-value=0.029 Score=46.64 Aligned_cols=131 Identities=12% Similarity=0.068 Sum_probs=81.9
Q ss_pred hhhCCCCCcceEEecCCCCCCCCccccccc-CCCCcc-EEEEEeeCCCCCCCCCC-ccC-CCCccEEEecCCccccccc-
Q 036876 56 NTFTKMPKLRFLKFYSSSFNGENKCKVSYL-QDLGFV-EVKYLHWHGYPLKSLPS-NLS-AEKLVLLEVPGSSIEQLWD- 130 (234)
Q Consensus 56 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~l-~L~~L~l~~~~~~~lp~-~~~-l~~L~~L~l~~~~l~~l~~- 130 (234)
..+..+.+|+.+.+..+- . .+. ..+... .|+.+.+..+ +..++. .+. +.+|+.+.+..+ +..++.
T Consensus 211 ~~f~~~~~l~~i~~~~~~-~-------~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~ 280 (379)
T 4h09_A 211 YGFSYGKNLKKITITSGV-T-------TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL 280 (379)
T ss_dssp TTTTTCSSCSEEECCTTC-C-------EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT
T ss_pred cccccccccceeeeccce-e-------EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccc
Confidence 344555666666554331 1 121 223444 6677776554 333332 234 678888888654 555544
Q ss_pred cccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccCCCCCCcCCC
Q 036876 131 GVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSDCSKLKRLPE 205 (234)
Q Consensus 131 ~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~ 205 (234)
.+..+.+|+.+.+..+. ++. ++. |.+..+| +.+.+.. .++.++ .+|.++++|+.+.+.. .+..+..
T Consensus 281 aF~~c~~L~~i~l~~~~-i~~-I~~~aF~~c~~L---~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSA-IET-LEPRVFMDCVKL---SSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp TTTTCTTCCEEEECCTT-CCE-ECTTTTTTCTTC---CEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEECT
T ss_pred ccccccccccccccccc-cce-ehhhhhcCCCCC---CEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEch
Confidence 36778899999998776 777 776 6666677 9999864 477776 4688888888887754 3555544
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.53 E-value=0.018 Score=48.38 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=67.7
Q ss_pred CCCccEEEecCCccccccccccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCCC
Q 036876 112 AEKLVLLEVPGSSIEQLWDGVKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLEC 188 (234)
Q Consensus 112 l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~ 188 (234)
+..|+.+.+..+...--...+.++.+|+.+.+... ++. ++. |.+..+| +.+.+.. .++.++ ..|.++++
T Consensus 264 c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~--i~~-I~~~aF~~c~~L---~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 264 CAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR--ITE-LPESVFAGCISL---KSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp CSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCE-ECTTTTTTCTTC---CEEECCT--TCCEECTTTTTTCTT
T ss_pred cccccEEecccccceecCcccccccccccccCCCc--ccc-cCceeecCCCCc---CEEEeCC--cccEehHhHhhCCCC
Confidence 45566665554332222233566777888887532 666 776 6666666 8888875 466666 46888899
Q ss_pred CCEEeccCCCCCCcCCCcccCCCCCCCcEEecCC
Q 036876 189 LTELDLSDCSKLKRLPEILSGIVNDALRIQHIGH 222 (234)
Q Consensus 189 L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l~~ 222 (234)
|+.+.+.. .++.++..+ +..+++|+.+++.+
T Consensus 336 L~~i~ip~--sv~~I~~~a-F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 336 LERIAIPS--SVTKIPESA-FSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEEECT--TCCBCCGGG-GTTCTTCCEEEESS
T ss_pred CCEEEECc--ccCEEhHhH-hhCCCCCCEEEECC
Confidence 99999864 477777754 78889999998764
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.76 E-value=0.038 Score=46.33 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCCccEEEecCCcccccccc-ccCCCCCcEEEcccCcccccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCC
Q 036876 112 AEKLVLLEVPGSSIEQLWDG-VKHYSKLNQIIHVACKKLIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLE 187 (234)
Q Consensus 112 l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~ 187 (234)
+..|+.+.+. +.++.++.. +.++.+|+.+.+..+ ++. ++. |.+..+| +.+.+.. .++.++ .+|.+++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~-I~~~aF~~C~~L---~~i~ip~--sv~~I~~~aF~~C~ 357 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQ-ILDDAFAGCEQL---ERIAIPS--SVTKIPESAFSNCT 357 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCE-ECTTTTTTCTTC---CEEEECT--TCCBCCGGGGTTCT
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccE-ehHhHhhCCCCC---CEEEECc--ccCEEhHhHhhCCC
Confidence 6778877775 345555544 667888999988754 666 765 6666677 9998864 467776 4688899
Q ss_pred CCCEEeccCCCCCCcCCCcccCCCCCCCcEEec
Q 036876 188 CLTELDLSDCSKLKRLPEILSGIVNDALRIQHI 220 (234)
Q Consensus 188 ~L~~L~l~~c~~l~~lp~~~~~~~l~~L~~l~l 220 (234)
+|+.+++.+.. ..... +.....|+.+.+
T Consensus 358 ~L~~i~~~~~~--~~~~~---~~~~~~L~~i~i 385 (394)
T 4gt6_A 358 ALNNIEYSGSR--SQWNA---ISTDSGLQNLPV 385 (394)
T ss_dssp TCCEEEESSCH--HHHHT---CBCCCCC-----
T ss_pred CCCEEEECCce--eehhh---hhccCCCCEEEe
Confidence 99999888632 12222 445556666555
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.67 E-value=0.024 Score=39.97 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=39.0
Q ss_pred cEEEcccCcccc--cCCCCCCCC-CCCCCccEEEecCCCCCCcccc-cccCCCCCCEEeccCCC
Q 036876 139 NQIIHVACKKLI--AKTPNPTLM-PHLNKLVILILRGSKSLKSLPA-EIFNLECLTELDLSDCS 198 (234)
Q Consensus 139 ~~L~l~~~~~l~--~~lp~~~~l-~~L~~l~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~ 198 (234)
..++.+++. ++ . +|. .+ .++ +.|+|++ +.++.+|. .+..+++|+.|++++++
T Consensus 11 ~~v~Cs~~~-L~~~~-vP~--~lp~~l---~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRG-LTWAS-LPT--AFPVDT---TELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSC-CCTTT-SCS--CCCTTC---SEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCC-Ccccc-CCC--CCCcCC---CEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 467777776 76 7 775 23 356 9999998 67888874 47788899999999853
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=84.43 E-value=0.66 Score=35.07 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=6.3
Q ss_pred CccEEEecCCccc
Q 036876 114 KLVLLEVPGSSIE 126 (234)
Q Consensus 114 ~L~~L~l~~~~l~ 126 (234)
.|+.|+|++|++.
T Consensus 71 ~L~~L~L~~n~ig 83 (197)
T 1pgv_A 71 HIEKFSLANTAIS 83 (197)
T ss_dssp CCCEEECTTSCCB
T ss_pred CcCEEEccCCCCC
Confidence 4445555554444
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=78.85 E-value=0.48 Score=35.81 Aligned_cols=87 Identities=8% Similarity=0.027 Sum_probs=48.6
Q ss_pred hCCCCCcceEEecCC-CCCCCCcccccccCCCCcc-EEEEEeeCCCCCCCCC-----CccC-CCCccEEEecCCcccc--
Q 036876 58 FTKMPKLRFLKFYSS-SFNGENKCKVSYLQDLGFV-EVKYLHWHGYPLKSLP-----SNLS-AEKLVLLEVPGSSIEQ-- 127 (234)
Q Consensus 58 ~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~l-~L~~L~l~~~~~~~lp-----~~~~-l~~L~~L~l~~~~l~~-- 127 (234)
+.+-+.|+.|+++++ .+.... ...+...+..- .|+.|++++|.++.-. ..+. -..|+.|+|++|.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~g--a~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKER--IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHH--HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HhcCCCccEEECCCCCCCCHHH--HHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 345568889999875 442100 00222334333 7889999998865321 1122 3567888888877762
Q ss_pred ---ccccccCCCCCcEEEcccC
Q 036876 128 ---LWDGVKHYSKLNQIIHVAC 146 (234)
Q Consensus 128 ---l~~~~~~l~~L~~L~l~~~ 146 (234)
+.+.+..=..|++|++++|
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 2223443445666666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.40 E-value=36 Score=22.16 Aligned_cols=42 Identities=10% Similarity=0.030 Sum_probs=30.8
Q ss_pred cccCCCC--CCCCCCCCCccEEEecCCCCCCccc-ccccCCCCCCEEeccC
Q 036876 149 LIAKTPN--PTLMPHLNKLVILILRGSKSLKSLP-AEIFNLECLTELDLSD 196 (234)
Q Consensus 149 l~~~lp~--~~~l~~L~~l~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~ 196 (234)
++. |.. |.+..+| +.+.+.. .++.+. ..|.++++|+.+.+.+
T Consensus 8 vt~-I~~~aF~~c~~L---~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVG-MDKSLFAGNTVI---REITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCS-SCSCTTTTCTTC---CCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred cCE-ecHHHhcCCCCC---cEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 555 665 6666666 8888875 566665 4688899999998876
Done!