BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036883
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1
Length = 687
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 119/208 (57%), Gaps = 16/208 (7%)
Query: 1 FEYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCK 60
FEY ++IDFE+TC K+ QEIIEFP+V+++ +GEI + F TYV+P P+L+DFC
Sbjct: 35 FEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDFCT 94
Query: 61 ELTGIQQHQVDNGITLGEALYFHDKWLLQM----------------GLNNTNFSVVTWSD 104
ELTGI Q QVD+G+ L L + W+ ++ + + VTWSD
Sbjct: 95 ELTGINQQQVDDGVPLKICLSQFNSWIQKLQKEKGIAFVTAVPTHSTAEHKMCAFVTWSD 154
Query: 105 WDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAVELAGLIWQGRVHC 164
WD V L ECR K+++KP N WI+LR + + L A++ G+ + GR H
Sbjct: 155 WDLGVCLLYECRRKQMKKPDILNSWIDLRATYKLFYNRRPKGLNGALQDLGIEFSGREHS 214
Query: 165 GLDDAINIARLLSVIMRRGFKFSITKSL 192
GLDD+ N A+L S ++ G ITKSL
Sbjct: 215 GLDDSRNTAKLASRMICDGCVMKITKSL 242
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 232 CYCGAKSIKKVIQRPGPKRGSFFFGCG----NWTPNRGACCNYFQWATT 276
C CG ++ + + GP +G F+ C N +G C+YF+W T
Sbjct: 595 CNCGRRAKRLTVSNAGPNQGKAFYTCSVKKRNEENKKG--CDYFKWEQT 641
>sp|A8K979|ERI2_HUMAN ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2
Length = 691
Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 124/209 (59%), Gaps = 17/209 (8%)
Query: 1 FEYYVVIDFEATC-DKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFC 59
F+Y +VIDFE+TC + ++ H QEIIEFP+V+++ +G+I + FQ YV+P P+L++FC
Sbjct: 34 FDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFC 93
Query: 60 KELTGIQQHQVDNGITLGEALYFHDKWLLQM----------GLNNTNFS------VVTWS 103
ELTGI+Q QVD G+ L L KW+ ++ G++ + S VTWS
Sbjct: 94 MELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWS 153
Query: 104 DWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAVELAGLIWQGRVH 163
DWD V LE EC+ K++ KP + N WI+LR + + L A++ G+ + GR H
Sbjct: 154 DWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGREH 213
Query: 164 CGLDDAINIARLLSVIMRRGFKFSITKSL 192
GLDD+ N A L ++R G IT+SL
Sbjct: 214 SGLDDSRNTALLAWKMIRDGCVMKITRSL 242
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 232 CYCGAKSIKKVIQRPGPKRGSFFFGC--GNWTPNRGACCNYFQWATT 276
C CG +S + V+ GP G F+ C G + NR CC YF+W T
Sbjct: 597 CKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENR-KCCGYFKWEQT 642
>sp|Q5BKS4|ERI2_MOUSE ERI1 exoribonuclease 2 OS=Mus musculus GN=Eri2 PE=2 SV=1
Length = 688
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/225 (38%), Positives = 125/225 (55%), Gaps = 22/225 (9%)
Query: 1 FEYYVVIDFEATC--DKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDF 58
+ Y +V+DFE+TC D + + P EIIEFP+V+++ +GEI + F YV+P P+L++F
Sbjct: 34 YAYLIVVDFESTCWNDGKHHSSP-EIIEFPAVLLNTATGEIESEFHAYVQPQEHPILSEF 92
Query: 59 CKELTGIQQHQVDNGITLGEALYFHDKWLLQMGLNNT-NFSV---------------VTW 102
C ELTGI+Q QVD G+ L L KW+ ++ T +F+ VTW
Sbjct: 93 CTELTGIKQVQVDEGVPLKICLSQFCKWIHKLQQQQTISFAAGDSEPSTSEVKLCAFVTW 152
Query: 103 SDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAVELAGLIWQGRV 162
SDWD V LE ECR K++ KP + N WI+LR + + L A++ G+ + GR
Sbjct: 153 SDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGRE 212
Query: 163 HCGLDDAINIARLLSVIMRRGFKFSITKSLTP---QANPNCLTWN 204
H GLDD+ N A L ++R G IT+SL + NP L N
Sbjct: 213 HSGLDDSRNTALLAWKMIRDGCLMKITRSLNKVLTKKNPKILARN 257
Score = 38.1 bits (87), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 232 CYCGAKSIKKVIQRPGPKRGSFFFGC--GNWTPNRGACCNYFQWATT 276
C CG +S + ++ GP G F+ C G + +R CC YF+W T
Sbjct: 594 CKCGRRSKRLIVSNNGPNHGKAFYCCPVGKYQQDR-KCCGYFKWEQT 639
>sp|A6QLH5|ERI3_BOVIN ERI1 exoribonuclease 3 OS=Bos taurus GN=ERI3 PE=2 SV=1
Length = 337
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 1 FEYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCK 60
+ Y++V+DFEATCDK + +HPQEIIEFP + ++G + EI + F YV+P P LT FC
Sbjct: 143 YHYFLVLDFEATCDKPQ-IHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCT 201
Query: 61 ELTGIQQHQVDNGITLGEALYFHDKWLLQMGLNNTNFS--VVTWSDWDCQVMLESECRIK 118
ELTGI Q VD +L + L D+W+ + GL + N VT DWD +VML +C+
Sbjct: 202 ELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYL 261
Query: 119 KIQKPAYFNQWINLRVPFSKVFG----DVRCNLKEAVELAGLIWQGRVHCGLDDAINIAR 174
+ YF QWINL+ +S G + ++ + + L + GR H G+DD NIA
Sbjct: 262 GLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHI---GRPHSGIDDCKNIAN 318
Query: 175 LLSVIMRRGFKFSITK 190
++ + RGF F T
Sbjct: 319 IMKTLAYRGFIFKQTS 334
>sp|O43414|ERI3_HUMAN ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=1 SV=2
Length = 337
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 1 FEYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCK 60
+ Y++V+DFEATCDK + +HPQEIIEFP + ++G + EI + F YV+P P LT FC
Sbjct: 143 YHYFLVLDFEATCDKPQ-IHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCT 201
Query: 61 ELTGIQQHQVDNGITLGEALYFHDKWLLQMGLNNTNFS--VVTWSDWDCQVMLESECRIK 118
ELTGI Q VD +L + L D+W+ + GL + N VT DWD +VML +C+
Sbjct: 202 ELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYL 261
Query: 119 KIQKPAYFNQWINLRVPFSKVFG----DVRCNLKEAVELAGLIWQGRVHCGLDDAINIAR 174
+ YF QWINL+ +S G + ++ + + L + GR H G+DD NIA
Sbjct: 262 GLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHI---GRPHSGIDDCKNIAN 318
Query: 175 LLSVIMRRGFKFSITK 190
++ + RGF F T
Sbjct: 319 IMKTLAYRGFIFKQTS 334
>sp|Q8C460|ERI3_MOUSE ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1
Length = 337
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 112/196 (57%), Gaps = 10/196 (5%)
Query: 1 FEYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCK 60
+ Y++V+DFEATCDK + +HPQEIIEFP + ++G + EI + F YV+P P LT FC
Sbjct: 143 YHYFLVLDFEATCDKPQ-IHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCT 201
Query: 61 ELTGIQQHQVDNGITLGEALYFHDKWLLQMGLNNTNFS--VVTWSDWDCQVMLESECRIK 118
ELTGI Q VD +L + L D+W+ + GL + N VT DWD +VML +C
Sbjct: 202 ELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTCGDWDLKVMLPGQCHYL 261
Query: 119 KIQKPAYFNQWINLRVPFSKVFG----DVRCNLKEAVELAGLIWQGRVHCGLDDAINIAR 174
+ YF QWINL+ +S G + ++ + + L + GR H G+DD NIA
Sbjct: 262 GLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHI---GRPHSGIDDCKNIAN 318
Query: 175 LLSVIMRRGFKFSITK 190
++ + RGF F T
Sbjct: 319 IMKTLAYRGFIFKQTS 334
>sp|Q502M8|ERI2_DANRE ERI1 exoribonuclease 2 OS=Danio rerio GN=eri2 PE=2 SV=1
Length = 555
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 111/204 (54%), Gaps = 15/204 (7%)
Query: 1 FEYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCK 60
F + ++IDFE+TC +E++ QEIIEFP+V++S SG + + F +YV+P P+L+ FC
Sbjct: 32 FSFLIIIDFESTCWREKSSSGQEIIEFPAVLLSVCSGAVESEFHSYVQPQERPVLSAFCT 91
Query: 61 ELTGIQQHQVDNGITLGEALYFHDKWLLQMG-------LNNTNFSV--------VTWSDW 105
ELTGI Q QVD+ L L +WL + L +++ + VTWSDW
Sbjct: 92 ELTGITQDQVDSAPPLHVVLSRFSRWLRSLQEERGVVFLTDSSGAAPSAQLCAFVTWSDW 151
Query: 106 DCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAVELAGLIWQGRVHCG 165
D V L EC+ K++ P WI+LR + + L+ A+ G+ + GR H G
Sbjct: 152 DLGVCLLYECKRKQLSVPEALKNWIDLRATYKLFYNRKPKGLRGALLDLGIEFTGREHSG 211
Query: 166 LDDAINIARLLSVIMRRGFKFSIT 189
L DA N A L +M G + SIT
Sbjct: 212 LVDARNTALLAQRMMTDGCQLSIT 235
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 179 IMRRGFKFSITKSLTPQANPNCLTWNRH-HFLEPQAMYTPPHTSLIHEFEDCRYCYCGAK 237
++R G +T SL A P L+ + H H L+ + T P C CG +
Sbjct: 448 LLRSGPLSPLTHSLGRIAAP--LSVHAHTHALKQKVKVTSP------------LCVCGRR 493
Query: 238 SIKKVIQRPGPKRGSFFFGCGNWTPNRGA-CCNYFQWAT 275
+ + + GP G F+ C N C++FQW +
Sbjct: 494 ARRLTVGNGGPNHGRVFYCCPRRRSNTHTHTCDFFQWES 532
>sp|Q8IV48|ERI1_HUMAN 3'-5' exoribonuclease 1 OS=Homo sapiens GN=ERI1 PE=1 SV=3
Length = 349
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 106/198 (53%), Gaps = 8/198 (4%)
Query: 1 FEYYVVIDFEATCDKERNLHPQ---EIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTD 57
++Y +IDFEATC E P+ EIIEFP V+++ + EI FQ YVRP L+D
Sbjct: 127 YDYICIIDFEATC--EEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSD 184
Query: 58 FCKELTGIQQHQVDNGITLGEALYFHDKWLLQMGLNNT-NFSVVTWSDWDCQVMLESECR 116
FC LTGI Q QVD T + L W+ L +S++T WD L +C+
Sbjct: 185 FCISLTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQ 244
Query: 117 IKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAV--ELAGLIWQGRVHCGLDDAINIAR 174
+ +++ P + +WIN+R + + R K + E G+ + GR HCGLDD+ NIAR
Sbjct: 245 LSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIAR 304
Query: 175 LLSVIMRRGFKFSITKSL 192
+ +++ G + I + +
Sbjct: 305 IAVRMLQDGCELRINEKM 322
>sp|Q7TMF2|ERI1_MOUSE 3'-5' exoribonuclease 1 OS=Mus musculus GN=Eri1 PE=1 SV=2
Length = 345
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 107/199 (53%), Gaps = 10/199 (5%)
Query: 1 FEYYVVIDFEATCDKERN----LHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLT 56
++Y +IDFEATC+ E N LH EIIEFP V+++ + EI FQ YVRP L+
Sbjct: 123 YDYICIIDFEATCE-EGNPAEFLH--EIIEFPVVLLNTHTLEIEDTFQQYVRPEVNAQLS 179
Query: 57 DFCKELTGIQQHQVDNGITLGEALYFHDKWLLQMGLNNT-NFSVVTWSDWDCQVMLESEC 115
+FC LTGI Q QVD + L +W+ L + ++T WD L +C
Sbjct: 180 EFCIGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLSIQC 239
Query: 116 RIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAV--ELAGLIWQGRVHCGLDDAINIA 173
R+ +++ PA+ +WIN+R + + R K + E G+ + GR H GLDD+ NIA
Sbjct: 240 RLSRLKHPAFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDDSKNIA 299
Query: 174 RLLSVIMRRGFKFSITKSL 192
R+ +++ G + I + +
Sbjct: 300 RIAVRMLQDGCELRINEKI 318
>sp|Q5FVR4|ERI1_RAT 3'-5' exoribonuclease 1 OS=Rattus norvegicus GN=Eri1 PE=2 SV=1
Length = 345
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 107/199 (53%), Gaps = 10/199 (5%)
Query: 1 FEYYVVIDFEATCDKERN----LHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLT 56
++Y +IDFEATC+ E N LH EIIEFP V+++ S EI FQ YVRP L+
Sbjct: 123 YDYICIIDFEATCE-EGNPAEFLH--EIIEFPVVLLNTHSLEIEDTFQQYVRPEVNSQLS 179
Query: 57 DFCKELTGIQQHQVDNGITLGEALYFHDKWLLQMGLNNT-NFSVVTWSDWDCQVMLESEC 115
+FC LTGI Q QVD + L +W+ L + ++T WD L +C
Sbjct: 180 EFCIGLTGITQDQVDRADAFPQVLKKVIEWMKSKELGTKYKYCILTDGSWDMSKFLNIQC 239
Query: 116 RIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAV--ELAGLIWQGRVHCGLDDAINIA 173
++ +++ P++ +WIN+R + + R K + E G+ + GR H GLDD+ NIA
Sbjct: 240 QLSRLKYPSFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHSGLDDSKNIA 299
Query: 174 RLLSVIMRRGFKFSITKSL 192
R+ +++ G + I + L
Sbjct: 300 RIAVRMLQDGCELRINEKL 318
>sp|O44406|ERI1_CAEEL 3'-5' exonuclease eri-1 OS=Caenorhabditis elegans GN=eri-1 PE=1
SV=2
Length = 582
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 105/204 (51%), Gaps = 7/204 (3%)
Query: 1 FEYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCK 60
F+Y + IDFE TC + +P EIIE P+V++ +II+ F+TYVRP P L++FC
Sbjct: 148 FDYLIAIDFECTCVEIIYDYPHEIIELPAVLIDVREMKIISEFRTYVRPVRNPKLSEFCM 207
Query: 61 ELTGIQQHQVDNGITLGEALYFHDKWL--LQMGLNNTNFSVVTWSDWDCQVMLESECRIK 118
+ T I Q VD EAL W+ +G N+ F+ VT D ++ +C +
Sbjct: 208 QFTKIAQETVDAAPYFREALQRLYTWMRKFNLGQKNSRFAFVTDGPHDMWKFMQFQCLLS 267
Query: 119 KIQKPAYFNQWINLRVPFSKVF-----GDVRCNLKEAVELAGLIWQGRVHCGLDDAINIA 173
I+ P F +IN++ F + F G+ + ++ +E L + G H GLDDA NIA
Sbjct: 268 NIRMPHMFRSFINIKKTFKEKFNGLIKGNGKSGIENMLERLDLSFVGNKHSGLDDATNIA 327
Query: 174 RLLSVIMRRGFKFSITKSLTPQAN 197
+ +M+ + I + + + N
Sbjct: 328 AIAIQMMKLKIELRINQKCSYKEN 351
>sp|Q10905|CRN4_CAEEL Cell death-related nuclease 4 OS=Caenorhabditis elegans GN=crn-4
PE=1 SV=1
Length = 298
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 16/216 (7%)
Query: 1 FEYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEII---ACFQTYVRPTFEPLLTD 57
F+ +++DFE T D +P E+I+F ++V V + I F YV+P LT
Sbjct: 8 FDTLLILDFETTSDAANQDYPCEVIQF-AIVAYDVPNDKIREDISFNKYVKPVLNRTLTK 66
Query: 58 FCKELTGIQQHQVDNGITLGEALYFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRI 117
C + TGI Q +D T +WL+ +GL F+ V S D + + + ++
Sbjct: 67 NCVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKL 126
Query: 118 KKIQKPAYFNQWINLRVPFSKVFG-------DVRCNLKEAVELAGLIWQGRVHCGLDDAI 170
IQ PA+F Q+INL F+ N+ + E L GR H +DD +
Sbjct: 127 SNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCL 186
Query: 171 NIARLLSVIMRRGFKFSITKSLTPQANPNCLTWNRH 206
NIA +L ++ G K ++ + LT C +W R
Sbjct: 187 NIATILQRMINMGAKVTVNELLTC-----CASWRRQ 217
>sp|Q08I43|ERI1_SCHPO 3'-5' exonuclease eri1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eri1 PE=1 SV=1
Length = 313
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 94/210 (44%), Gaps = 23/210 (10%)
Query: 1 FEYYVVIDFEATCDKERNLH-PQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFC 59
Y +++D EATC++ EIIE P ++ + II F +YVRP+ P L+D+C
Sbjct: 79 LRYLLIVDVEATCEEGCGFSFENEIIELPCLLFDLIEKSIIDEFHSYVRPSMNPTLSDYC 138
Query: 60 KELTGIQQHQVDNGITLGEA-------LYFHDKWLLQ-----------MGLNNTNFSVVT 101
K LTGIQQ VD + L H L+ + T
Sbjct: 139 KSLTGIQQCTVDKAPIFSDVLEELFIFLRKHSNILVPSVDEIEIIEPLKSVPRTQPKNWA 198
Query: 102 WS---DWDCQVMLESECRIKKIQKPAYFN-QWINLRVPFSKVFGDVRCNLKEAVELAGLI 157
W+ WD L + + K+ P + ++++R + V+ R N+ +E GL
Sbjct: 199 WACDGPWDMASFLAKQFKYDKMPIPDWIKGPFVDIRSFYKDVYRVPRTNINGMLEHWGLQ 258
Query: 158 WQGRVHCGLDDAINIARLLSVIMRRGFKFS 187
++G H G+DDA N++R++ + +F
Sbjct: 259 FEGSEHRGIDDARNLSRIVKKMCSENVEFE 288
>sp|Q8W566|Y3514_ARATH Uncharacterized exonuclease domain-containing protein At3g15140
OS=Arabidopsis thaliana GN=At3g15140 PE=2 SV=1
Length = 337
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 29/222 (13%)
Query: 1 FEYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPT--FEPLLTDF 58
F +++VID E EI+EFP ++V + E++ F +VRPT E + +
Sbjct: 126 FNFFLVIDLEGKV---------EILEFPILIVDAKTMEVVDLFHRFVRPTKMSEQAINKY 176
Query: 59 CK----ELTGIQQHQVDNGITLGEALYFHDKWLLQM---------GLNNTNFSVVTWSDW 105
+ EL G+ + D I + + + WL + GLN+ F VT +W
Sbjct: 177 IEGKYGEL-GVDRVWHDTAIPFKQVVEEFEVWLAEHDLWDKDTDWGLNDAAF--VTCGNW 233
Query: 106 DCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAVELAGLIWQGRVHCG 165
D + + +C + I P YF +WINL+ + +G + + G+ G H G
Sbjct: 234 DIKTKIPEQCVVSNINLPPYFMEWINLKDVYLNFYGREARGMVSMMRQCGIKLMGSHHLG 293
Query: 166 LDDAINIARLLSVIMRRG--FKFSITKSLTPQANPNCLTWNR 205
+DD NI R++ ++ G K + +S + N L NR
Sbjct: 294 IDDTKNITRVVQRMLSEGAVLKLTARRSKSNMRNVEFLFKNR 335
>sp|O05231|KAPD_BACSU Probable 3'-5' exonuclease KapD OS=Bacillus subtilis (strain 168)
GN=kapD PE=3 SV=1
Length = 205
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 5 VVIDFEATCDKER----NLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCK 60
++IDFE T + N P EIIE + +V + E++ F +YVRP P LT CK
Sbjct: 7 LIIDFEFTMPDGKYSPQNFFP-EIIE--AGIVKSIDDEVVETFSSYVRPKKFPKLTKRCK 63
Query: 61 ELTGIQQHQVDNGITLGEALYFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKI 120
I Q QVD G+ + + + L ++ N +++TW + D +V L+ C I
Sbjct: 64 SFLKITQKQVDEGMRFEDFI----RKLNELD-PEKNSTIITWGNMDMKV-LKQNCMFNHI 117
Query: 121 QKPAYFNQWINLRVPFSKVFGD-VRCNLKEAVELAGLIWQGRVHCGLDDAINIARLLSVI 179
P + + +L + + FGD L +A E G G H LDDA+ +L ++
Sbjct: 118 PFP-FKGEMRDLSLEYKNFFGDRTLTGLWKAAEEYGDSGTGTHHKALDDALTAYKLFKLV 176
>sp|P47729|DPO3_MYCPU DNA polymerase III PolC-type OS=Mycoplasma pulmonis (strain UAB
CTIP) GN=polC PE=3 SV=2
Length = 1435
Score = 39.3 bits (90), Expect = 0.033, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 4 YVVIDFEATCDKERNLHP--QEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKE 61
YVV D E T L P E+I+F + V+ +G II +++P + L F +
Sbjct: 404 YVVYDIETT-----GLSPMLNELIQFGASVIK--NGRIIETHHFFIKPKSK--LDSFTTK 454
Query: 62 LTGIQQHQVDNGITLGEAL 80
LTGI Q ++ G L EAL
Sbjct: 455 LTGITQEHLEKGYELQEAL 473
>sp|Q13472|TOP3A_HUMAN DNA topoisomerase 3-alpha OS=Homo sapiens GN=TOP3A PE=1 SV=1
Length = 1001
Score = 38.1 bits (87), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 232 CYCGAKSIKKVIQRPGPKRGSFFFGCGNWTPNRGACCNYFQWATT 276
C CG +++ +++ GP RG FF C G CN+F WA +
Sbjct: 813 CNCGQEAVLLTVRKEGPNRGRQFFKCN------GGSCNFFLWADS 851
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 232 CYCGAKSIKKVIQRPGPKRGSFFFGCGNWTPNRGACCNYFQW 273
C C S+ + +Q+ GP +G F C R C +FQW
Sbjct: 897 CLCSQPSVTRTVQKDGPNKGRQFHTCAK---PREQQCGFFQW 935
>sp|O70157|TOP3A_MOUSE DNA topoisomerase 3-alpha OS=Mus musculus GN=Top3a PE=1 SV=1
Length = 1003
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 232 CYCGAKSIKKVIQRPGPKRGSFFFGCGNWTPNRGACCNYFQWATTS 277
C CG +++ +++ GP +G F+ C N CN+F WA +S
Sbjct: 815 CNCGREAVLLTVRKQGPNQGRHFYKCSNGD------CNFFLWADSS 854
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 232 CYCGAKSIKKVIQRPGPKRGSFFFGCGNWTPNRGACCNYFQW 273
C CG ++ + +Q+ GP +G F C R C +FQW
Sbjct: 899 CLCGQPAVTRTVQKDGPNKGRQFHTCAK---PREQQCGFFQW 937
>sp|O61660|TOP3_CAEEL DNA topoisomerase 3 OS=Caenorhabditis elegans GN=top-3 PE=2 SV=1
Length = 759
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 231 YCYCGA--KSIKKVIQRPGPKRGSFFFGCGNWTPNRGACCNYFQWA 274
+C C +++ KV+Q+ GP +G F+ C + CN+F+WA
Sbjct: 715 FCQCPEPMRAVTKVVQKEGPNKGKKFYTC-SLPYTSSEKCNFFKWA 759
>sp|Q8K203|NEIL3_MOUSE Endonuclease 8-like 3 OS=Mus musculus GN=Neil3 PE=1 SV=1
Length = 606
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 231 YCYCGAKSIKKVIQRPGPKRGSFFFGCGNWTPNRGACCNYFQWA 274
+C G +SI K + + GP G FF C + CN+FQWA
Sbjct: 554 FCRHGKRSIMKTVLKIGPNNGKNFFVC---PLEKKKQCNFFQWA 594
>sp|Q9NG98|TOP3A_DROME DNA topoisomerase 3-alpha OS=Drosophila melanogaster GN=Top3alpha
PE=2 SV=2
Length = 1250
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 232 CYCGAKSIKKVIQRPGPKRGSFFFGCGNWTPNRGACCNYFQWA 274
C CG + + +++ GP +G F+ C P R C +F+W
Sbjct: 1152 CNCGQLASQLTVRKDGPNQGRPFYAC----PTREKSCGFFKWG 1190
>sp|Q3MHN7|NEIL3_BOVIN Endonuclease 8-like 3 OS=Bos taurus GN=NEIL3 PE=2 SV=1
Length = 606
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 231 YCYCGAKSIKKVIQRPGPKRGSFFFGCGNWTPNRGACCNYFQWA 274
+C G +SI + + + GP G FF C + CN+FQWA
Sbjct: 554 FCNHGKRSIMRTVLKIGPNNGKNFFVCPLGKEKQ---CNFFQWA 594
>sp|Q8TAT5|NEIL3_HUMAN Endonuclease 8-like 3 OS=Homo sapiens GN=NEIL3 PE=1 SV=3
Length = 605
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 231 YCYCGAKSIKKVIQRPGPKRGSFFFGCGNWTPNRGACCNYFQWA 274
+C G +S K + + GP G FF C + CN+FQWA
Sbjct: 553 FCNHGKRSTMKTVLKIGPNNGKNFFVCPLGKEKQ---CNFFQWA 593
>sp|Q21J16|UVRC_SACD2 UvrABC system protein C OS=Saccharophagus degradans (strain 2-40 /
ATCC 43961 / DSM 17024) GN=uvrC PE=3 SV=1
Length = 612
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 142 DVRCNLKEAVELAGLIWQGRVHCGLDDAINIARLLSVIMRR--GFKFSITKSLTPQANPN 199
D+R + V AG Q V C + ++ +L V R G K + K+ +
Sbjct: 240 DLRQVQAQQVMEAGYSNQDVVACASESGVHCIHILYVRQGRIVGSKSYLPKTKLDSTEED 299
Query: 200 CLT-WNRHHFLEPQAMYTPPHTSLIHEFED 228
L+ + HH+L AM PPH + H+ D
Sbjct: 300 VLSAFLAHHYLGGAAMDVPPHIIISHKLAD 329
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,298,964
Number of Sequences: 539616
Number of extensions: 4448513
Number of successful extensions: 9846
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9782
Number of HSP's gapped (non-prelim): 38
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)