Query 036883
Match_columns 277
No_of_seqs 234 out of 1157
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 10:24:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cg7_A CRN-4, cell death-relat 100.0 4.5E-42 1.5E-46 314.5 22.9 246 1-251 18-285 (308)
2 1w0h_A 3'-5' exonuclease ERI1; 100.0 4E-39 1.4E-43 277.2 22.5 192 1-192 9-204 (204)
3 1zbh_A 3'-5' exonuclease ERI1; 100.0 5.6E-38 1.9E-42 286.2 24.4 195 1-196 77-276 (299)
4 2xri_A ERI1 exoribonuclease 3; 100.0 5.5E-38 1.9E-42 274.9 23.3 188 1-190 30-221 (224)
5 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 1.6E-37 5.4E-42 288.6 21.7 195 1-196 127-326 (349)
6 2gui_A DNA polymerase III epsi 100.0 7.1E-34 2.4E-38 242.9 19.2 173 2-185 9-187 (194)
7 2p1j_A POLIII, DNA polymerase 100.0 2.6E-33 8.8E-38 238.4 18.7 166 2-184 12-177 (186)
8 3mxm_B Three prime repair exon 100.0 2.3E-32 8E-37 242.1 13.8 172 2-182 12-214 (242)
9 2f96_A Ribonuclease T; RNAse, 100.0 4E-31 1.4E-35 231.0 18.4 175 3-183 30-213 (224)
10 3u3y_B Three prime repair exon 100.0 8E-31 2.7E-35 239.5 15.0 172 2-182 12-214 (314)
11 1y97_A Three prime repair exon 100.0 2.7E-30 9.1E-35 227.4 16.3 173 2-184 10-211 (238)
12 3v9w_A Ribonuclease T; DEDD nu 100.0 2.4E-29 8.3E-34 221.1 19.4 176 3-184 38-222 (235)
13 2igi_A Oligoribonuclease; RNAs 99.9 1.2E-27 4.2E-32 201.8 11.3 164 2-184 5-178 (180)
14 1wlj_A Interferon stimulated g 99.9 7.9E-28 2.7E-32 205.1 8.9 156 2-183 5-169 (189)
15 2qxf_A Exodeoxyribonuclease I; 99.9 1.5E-26 5.1E-31 222.7 16.2 170 2-183 9-201 (482)
16 2gbz_A Oligoribonuclease; ORN, 99.9 6E-27 2.1E-31 200.5 11.6 165 2-184 9-182 (194)
17 3tr8_A Oligoribonuclease; tran 99.9 7.9E-26 2.7E-30 192.6 10.0 166 2-185 9-183 (186)
18 4hec_A Putative uncharacterize 99.0 3.8E-10 1.3E-14 95.7 7.7 153 4-182 24-181 (190)
19 4gmj_B CCR4-NOT transcription 98.8 1.4E-07 4.8E-12 84.7 17.3 171 3-183 35-245 (285)
20 2kfn_A Klenow fragment of DNA 98.6 5.1E-07 1.7E-11 89.1 13.9 143 3-182 27-192 (605)
21 2d5r_A CCR4-NOT transcription 98.6 3.8E-06 1.3E-10 74.0 17.6 173 3-185 25-237 (252)
22 2p51_A SPCC18.06C protein; DED 98.5 6.3E-06 2.1E-10 75.1 17.7 170 3-182 46-255 (333)
23 1uoc_A POP2; hydrolase, DEDD n 98.5 5.6E-06 1.9E-10 74.3 15.9 173 3-184 39-266 (289)
24 1qht_A Protein (DNA polymerase 98.1 5.8E-05 2E-09 76.5 15.6 150 3-180 136-327 (775)
25 1x9m_A DNA polymerase; DNA plo 98.1 7.9E-06 2.7E-10 81.9 8.8 138 4-183 1-183 (698)
26 3iay_A DNA polymerase delta ca 97.6 0.0014 4.7E-08 67.6 16.6 156 3-179 250-465 (919)
27 1s5j_A DNA polymerase I; repli 97.6 0.00059 2E-08 69.8 13.1 155 3-176 191-386 (847)
28 3d45_A Poly(A)-specific ribonu 97.5 0.0013 4.4E-08 63.5 13.8 83 96-182 277-391 (507)
29 2gv9_A DNA polymerase; polymer 97.5 0.0029 9.8E-08 66.8 17.1 169 3-179 321-550 (1193)
30 1noy_A Protein (DNA polymerase 97.4 0.0019 6.4E-08 60.1 12.6 164 3-179 107-335 (388)
31 4dfk_A DNA polymerase I, therm 96.0 0.017 5.9E-07 56.0 8.6 117 4-183 12-128 (540)
32 3qex_A DNA polymerase, GP43; d 96.0 0.12 4E-06 53.1 15.0 164 3-178 109-337 (903)
33 3k59_A POL II, DNA polymerase 95.2 0.5 1.7E-05 47.8 15.7 147 3-179 154-349 (786)
34 2a1r_A Poly(A)-specific ribonu 92.7 0.53 1.8E-05 44.2 9.7 83 96-182 282-396 (430)
35 3saf_A Exosome component 10; e 91.7 2.3 7.7E-05 39.9 12.7 89 81-182 172-276 (428)
36 1vk0_A Hypothetical protein; h 87.3 0.96 3.3E-05 38.1 5.9 89 80-181 97-205 (206)
37 1yt3_A Ribonuclease D, RNAse D 84.2 5.2 0.00018 36.4 9.6 89 81-182 64-169 (375)
38 3pv8_A DNA polymerase I; DNA p 82.0 1 3.5E-05 44.1 4.1 130 3-181 30-179 (592)
39 2e6m_A Werner syndrome ATP-dep 76.3 7.4 0.00025 31.9 7.2 91 81-183 86-195 (208)
40 2py5_A DNA polymerase; protein 74.9 3.6 0.00012 39.9 5.6 132 2-182 6-183 (575)
41 2hbj_A Exosome complex exonucl 72.9 14 0.00047 34.2 8.7 89 81-182 149-253 (410)
42 3cym_A Uncharacterized protein 66.9 21 0.00072 33.3 8.7 87 80-182 84-186 (440)
43 3q7c_A Nucleoprotein; deddh ex 51.1 25 0.00086 29.6 5.4 86 6-112 61-146 (243)
44 2gai_A DNA topoisomerase I; zi 49.0 4.3 0.00015 40.0 0.5 23 249-276 589-611 (633)
45 1hy9_A Cocaine and amphetamine 44.7 8.6 0.00029 23.5 1.2 34 229-272 4-37 (41)
46 2a1r_A Poly(A)-specific ribonu 35.0 64 0.0022 29.9 6.2 48 3-50 23-95 (430)
47 1nwz_A PYP, photoactive yellow 32.1 18 0.00062 27.7 1.6 37 25-75 26-62 (125)
48 3mwp_A Nucleoprotein; structur 32.1 63 0.0022 30.3 5.4 87 5-112 394-480 (577)
49 1mzu_A PPR; photoactive yellow 31.6 19 0.00064 27.9 1.6 38 24-75 30-67 (129)
50 2d9i_A NEDD4-binding protein 2 22.0 1.6E+02 0.0053 20.8 5.1 55 57-120 8-75 (96)
No 1
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=100.00 E-value=4.5e-42 Score=314.53 Aligned_cols=246 Identities=26% Similarity=0.359 Sum_probs=196.9
Q ss_pred CCeEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEe--EEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHH
Q 036883 1 FEYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIA--CFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGE 78 (277)
Q Consensus 1 f~~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~--~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~e 78 (277)
|++|||||+||||++.....+.||||||||++|.++|++++ +|++||||...+.|+++++++||||++||++||+|++
T Consensus 18 ~~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~~e 97 (308)
T 3cg7_A 18 FDTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFDV 97 (308)
T ss_dssp CSEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBHHH
T ss_pred CCeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCHHH
Confidence 57899999999997532112359999999999977899988 9999999986445999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCCC-------CCCHHHHH
Q 036883 79 ALYFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGDV-------RCNLKEAV 151 (277)
Q Consensus 79 vl~~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~~-------~~~L~~l~ 151 (277)
|+.+|.+||++..+++++.++|+||.||++.||+++|+++|++.|.++.+|+|++.+++.+++.. +++|++|+
T Consensus 98 vl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~ 177 (308)
T 3cg7_A 98 VYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMN 177 (308)
T ss_dssp HHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHH
T ss_pred HHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHHH
Confidence 99999999999999999999999999997469999999999998876678999999988776531 47899999
Q ss_pred HHhCCCCCCCCCchHHHHHHHHHHHHHHHHhcCccCcCcccccccCCCcccccccCC-CCCCC------CCCCCCCccc-
Q 036883 152 ELAGLIWQGRVHCGLDDAINIARLLSVIMRRGFKFSITKSLTPQANPNCLTWNRHHF-LEPQA------MYTPPHTSLI- 223 (277)
Q Consensus 152 ~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~- 223 (277)
+++|++..+++|+|++||++||+||.+|++++..+++++.+.....++..+....+. .++.+ .+--+.++..
T Consensus 178 ~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~~~s~~~~~~~~~~~~~w~~~~~~~~~~~~~~~p~~~~~~ 257 (308)
T 3cg7_A 178 EYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTCCASWRRQPLVYNKEWRSSFMDAGKIFERVLPLVVTTI 257 (308)
T ss_dssp HHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEESCCGGGSSCCCCCTTGGGCHHHHHHHHHHHSSCEEEEC
T ss_pred HHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHHhhcCCccccccccCcccccchHHHHHHHHHhcccceeee
Confidence 999999987789999999999999999999999999999987665554444332110 01100 0001222222
Q ss_pred -----ccCCceeeeecCCccccceeccCCCCCC
Q 036883 224 -----HEFEDCRYCYCGAKSIKKVIQRPGPKRG 251 (277)
Q Consensus 224 -----~~~~~~~~c~c~~~~~~~~~~~~g~~~g 251 (277)
..+++..+|+|+.....+ |+-|+
T Consensus 258 ~~~~~~~~~~~~~~~c~~~~~~~-----~~~~~ 285 (308)
T 3cg7_A 258 RAGDFRLEMYGVCRYCRKGMDVC-----GTSHQ 285 (308)
T ss_dssp CGGGCCGGGTTBCTTTCCBTTTT-----TSSCS
T ss_pred eccccchhhcccCCcCCCccccc-----ccccC
Confidence 125668899999998665 55555
No 2
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=4e-39 Score=277.18 Aligned_cols=192 Identities=35% Similarity=0.674 Sum_probs=167.4
Q ss_pred CCeEEEEEEccCCCCCCC-CCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHH
Q 036883 1 FEYYVVIDFEATCDKERN-LHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEA 79 (277)
Q Consensus 1 f~~~vviDlETTg~~~~~-~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~ev 79 (277)
++.|||||+||||+.... +..++|||||||++|.++|+++++|++||+|..++.|+++++++||||+++|+++|+|++|
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~v 88 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 88 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 578999999999975311 2578999999999986689999999999999865579999999999999999999999999
Q ss_pred HHHHHHHHhhcCC-CCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCC--CCCCHHHHHHHhCC
Q 036883 80 LYFHDKWLLQMGL-NNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGD--VRCNLKEAVELAGL 156 (277)
Q Consensus 80 l~~f~~fl~~~~l-~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~--~~~~L~~l~~~~gi 156 (277)
+.+|.+|+++..+ ....++|+||+.||++.||+++|+++|++.|.++.+|+|++.+++.+++. .+++|+++++++|+
T Consensus 89 ~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~gi 168 (204)
T 1w0h_A 89 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 168 (204)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHHcCC
Confidence 9999999998752 23346788999999623999999999999886556899999999988874 25899999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcCccCcCccc
Q 036883 157 IWQGRVHCGLDDAINIARLLSVIMRRGFKFSITKSL 192 (277)
Q Consensus 157 ~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~i~~~l 192 (277)
+..+++|+|++||++||+||.+|++++..+.|++.+
T Consensus 169 ~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~i~~~~ 204 (204)
T 1w0h_A 169 DYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKM 204 (204)
T ss_dssp CCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEC
T ss_pred CCCCCccCcHHHHHHHHHHHHHHHHCCCeeeecCcC
Confidence 988778999999999999999999999999998864
No 3
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=286.24 Aligned_cols=195 Identities=34% Similarity=0.633 Sum_probs=169.9
Q ss_pred CCeEEEEEEccCCCCCC-CCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHH
Q 036883 1 FEYYVVIDFEATCDKER-NLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEA 79 (277)
Q Consensus 1 f~~~vviDlETTg~~~~-~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~ev 79 (277)
++.|||||+||||++.. .+..++|||||||+++..+|+++++|++||+|..++.|+++++++||||++||++|++|.+|
T Consensus 77 ~~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~ev 156 (299)
T 1zbh_A 77 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 156 (299)
T ss_dssp CSEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred CceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHH
Confidence 46899999999997532 24679999999999996678999999999999865579999999999999999999999999
Q ss_pred HHHHHHHHhhcCCC-CCcEEEEEeccchHHH-HHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCCCC--CCHHHHHHHhC
Q 036883 80 LYFHDKWLLQMGLN-NTNFSVVTWSDWDCQV-MLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVR--CNLKEAVELAG 155 (277)
Q Consensus 80 l~~f~~fl~~~~l~-~~~~~vv~~~~fDl~~-~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~~~--~~L~~l~~~~g 155 (277)
+.+|.+|+++..+. ...++|+||+.||+ . ||+.+|+++|++.|.+...|+|++.+|+.+++..+ ++|++|++++|
T Consensus 157 l~~f~~~l~~~~~~~~~~~lVahn~~fD~-~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~g 235 (299)
T 1zbh_A 157 LKKVIDLMKLKELGTKYKYSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG 235 (299)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHH-HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTT
T ss_pred HHHHHHHHhhcccCCCCcEEEEEeCHHHH-HHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHHcC
Confidence 99999999986332 12467889999996 7 99999999999888666789999999988876544 89999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHhcCccCcCccccccc
Q 036883 156 LIWQGRVHCGLDDAINIARLLSVIMRRGFKFSITKSLTPQA 196 (277)
Q Consensus 156 i~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~i~~~l~~~~ 196 (277)
++..+++|+|++||++||+||.+|++++..+.+++.+....
T Consensus 236 i~~~g~~H~Al~DA~ata~l~~~l~~~~~~~~~~~l~~~~~ 276 (299)
T 1zbh_A 236 MDYDGRPNCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQ 276 (299)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTE
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhCCcCChhhhhhcCc
Confidence 99887789999999999999999999999998888876443
No 4
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.5e-38 Score=274.93 Aligned_cols=188 Identities=41% Similarity=0.723 Sum_probs=161.6
Q ss_pred CCeEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHH
Q 036883 1 FEYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEAL 80 (277)
Q Consensus 1 f~~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl 80 (277)
|++|||||+||||+.. ...++||||||||+++..+++++++|++||+|..++.|+++++++||||+++|++||+|++|+
T Consensus 30 ~~~~vviD~ETTGl~~-~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~ 108 (224)
T 2xri_A 30 YHYFLVLDFEATCDKP-QIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVL 108 (224)
T ss_dssp CSEEEEECCEECCCC--CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHH
T ss_pred CCeEEEEEEEcCCCCC-CCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHH
Confidence 4689999999998742 112359999999999965579999999999998655799999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCc--EEEEEeccchHHHH-HHHHHHHhCCCCCCCCcchhhhHHHHhHhcCC-CCCCHHHHHHHhCC
Q 036883 81 YFHDKWLLQMGLNNTN--FSVVTWSDWDCQVM-LESECRIKKIQKPAYFNQWINLRVPFSKVFGD-VRCNLKEAVELAGL 156 (277)
Q Consensus 81 ~~f~~fl~~~~l~~~~--~~vv~~~~fDl~~~-L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~-~~~~L~~l~~~~gi 156 (277)
.+|.+|+++..+++++ +++++||.||+ .| |+++|+++|++.|.++.+|+|++..+....+. ..++|.++++++|+
T Consensus 109 ~~f~~~l~~~~lv~hn~~~~~~t~g~fD~-~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~~gi 187 (224)
T 2xri_A 109 ERVDEWMAKEGLLDPNVKSIFVTCGDWDL-KVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSL 187 (224)
T ss_dssp HHHHHHHHHTTTTSTTSCEEEEESSSHHH-HTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHHHTTC
T ss_pred HHHHHHHhhcccccCCCceEEEEeChhhH-HHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHHHHcCC
Confidence 9999999998887764 68899999997 65 88999999999886667899987766554432 34799999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhcCccCcCc
Q 036883 157 IWQGRVHCGLDDAINIARLLSVIMRRGFKFSITK 190 (277)
Q Consensus 157 ~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~i~~ 190 (277)
+..+++|+|++||++||+||.+|+++|..+.++.
T Consensus 188 ~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~it~ 221 (224)
T 2xri_A 188 QHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTS 221 (224)
T ss_dssp CCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred CCCCCCcChHHHHHHHHHHHHHHHHcCCEEeecC
Confidence 9877789999999999999999999999887764
No 5
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=288.62 Aligned_cols=195 Identities=34% Similarity=0.641 Sum_probs=170.1
Q ss_pred CCeEEEEEEccCCCCCC-CCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHH
Q 036883 1 FEYYVVIDFEATCDKER-NLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEA 79 (277)
Q Consensus 1 f~~~vviDlETTg~~~~-~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~ev 79 (277)
++.|||||+||||++.. .+..++|||||||+++..+|+++++|++||+|..++.|+++++++||||++||++|++|.+|
T Consensus 127 ~~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eV 206 (349)
T 1zbu_A 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 206 (349)
T ss_dssp CSEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHH
T ss_pred CCeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 46899999999997432 24679999999999996678999999999999865579999999999999999999999999
Q ss_pred HHHHHHHHhhcCCC-CCcEEEEEeccchHHH-HHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCCCC--CCHHHHHHHhC
Q 036883 80 LYFHDKWLLQMGLN-NTNFSVVTWSDWDCQV-MLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVR--CNLKEAVELAG 155 (277)
Q Consensus 80 l~~f~~fl~~~~l~-~~~~~vv~~~~fDl~~-~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~~~--~~L~~l~~~~g 155 (277)
+.+|.+|+++..+. +..++|+||+.||+ . ||+.+|.++|++.|.+...|+|++.+|+.+++..+ ++|++|+++||
T Consensus 207 l~~f~~~l~~~~~~~~~~~lVaHNa~FD~-~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~g 285 (349)
T 1zbu_A 207 LKKVIDLMKLKELGTKYKYSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG 285 (349)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSSHHH-HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTT
T ss_pred HHHHHHHHhcccccCCCcEEEEECcHhhH-HHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcC
Confidence 99999999886322 12477889999996 7 99999999999888666789999999988876544 89999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHhcCccCcCccccccc
Q 036883 156 LIWQGRVHCGLDDAINIARLLSVIMRRGFKFSITKSLTPQA 196 (277)
Q Consensus 156 i~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~i~~~l~~~~ 196 (277)
|+..+++|+|++||++||+||.+|++++..+.+++.+....
T Consensus 286 i~~~g~~HrAl~DA~ata~ll~~ll~~~~~~~i~ell~~~~ 326 (349)
T 1zbu_A 286 MDYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQ 326 (349)
T ss_dssp CCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHhhcc
Confidence 99887789999999999999999999999998888876443
No 6
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=100.00 E-value=7.1e-34 Score=242.88 Aligned_cols=173 Identities=18% Similarity=0.149 Sum_probs=146.0
Q ss_pred CeEEEEEEccCCCCCCC--CCCCcEEEEceEEEECCCCEEE-eEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHH
Q 036883 2 EYYVVIDFEATCDKERN--LHPQEIIEFPSVVVSGVSGEII-ACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGE 78 (277)
Q Consensus 2 ~~~vviDlETTg~~~~~--~~~~eIIEIgAV~vd~~~g~i~-~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~e 78 (277)
.+|||||+||||+.... ...++|||||||+++ +|+++ ++|++||+|.. .|+++++++||||+++|+++|+|++
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~--~~~~~~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~ 84 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVV--NRRLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPTFAE 84 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEE--TTEECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCCHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEE--CCeEeccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCCHHH
Confidence 36899999999864210 035899999999998 67876 47999999985 5999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCC--cchhhhHHHHhHhcCCCCCCHHHHHHHhCC
Q 036883 79 ALYFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYF--NQWINLRVPFSKVFGDVRCNLKEAVELAGL 156 (277)
Q Consensus 79 vl~~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~--~~~iDl~~~~~~~~~~~~~~L~~l~~~~gi 156 (277)
|+.+|.+|+++. .+|.||+.||+ .||.++|.++|++.|.+. .+++|+..+++..++..+++|+++++++|+
T Consensus 85 v~~~~~~~l~~~------~lv~hn~~fD~-~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~~gi 157 (194)
T 2gui_A 85 VADEFMDYIRGA------ELVIHNAAFDI-GFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEI 157 (194)
T ss_dssp HHHHHHHHHTTS------EEEETTHHHHH-HHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHHTTC
T ss_pred HHHHHHHHHCCC------eEEEEchHHhH-HHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHHcCc
Confidence 999999999874 45666889997 799999999999877543 579999988888887667899999999999
Q ss_pred CCCC-CCCchHHHHHHHHHHHHHHHHhcCc
Q 036883 157 IWQG-RVHCGLDDAINIARLLSVIMRRGFK 185 (277)
Q Consensus 157 ~~~~-~~H~Al~DA~~ta~l~~~l~~~g~~ 185 (277)
+..+ .+|+|++||++|++||.+|+++...
T Consensus 158 ~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~ 187 (194)
T 2gui_A 158 DNSKRTLHGALLDAQILAEVYLAMTGGQTS 187 (194)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHHHHTC----
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhccch
Confidence 9876 3899999999999999999876443
No 7
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=2.6e-33 Score=238.41 Aligned_cols=166 Identities=23% Similarity=0.236 Sum_probs=145.6
Q ss_pred CeEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHHH
Q 036883 2 EYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEALY 81 (277)
Q Consensus 2 ~~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl~ 81 (277)
.+||+||+||||+ ++..++|||||||+++ +|+++++|++||+|.. .++++++++||||+++|+++++|.+|+.
T Consensus 12 ~~~v~iD~ETTGl---~~~~~~IieIg~v~~~--~g~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~v~~ 84 (186)
T 2p1j_A 12 ATFVVLDFETTGL---DPQVDEIIEIGAVKIQ--GGQIVDEYHTLIKPSR--EISRKSSEITGITQEMLENKRSIEEVLP 84 (186)
T ss_dssp -CEEEEEEEESCS---CTTTCCEEEEEEEEEE--TTEEEEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCCBHHHHHH
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEE--CCEEEEEEEEEECcCC--CCCHHHhhhcCCCHHHHhcCCCHHHHHH
Confidence 3699999999985 4567899999999997 7899999999999985 5999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCCCCCCHHHHHHHhCCCCCCC
Q 036883 82 FHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAVELAGLIWQGR 161 (277)
Q Consensus 82 ~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~~~~~L~~l~~~~gi~~~~~ 161 (277)
+|.+|+++. .++.||+.||+ .||++++.+.|++.|. .+++|+..+++..++..+++|+++++++|++..+
T Consensus 85 ~~~~~l~~~------~lv~hn~~fD~-~~L~~~~~~~g~~~~~--~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~~- 154 (186)
T 2p1j_A 85 EFLGFLEDS------IIVAHNANFDY-RFLRLWIKKVMGLDWE--RPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPFR- 154 (186)
T ss_dssp HHHHHSSSC------EEEETTHHHHH-HHHHHHHHHHHCCCCC--CCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCSTT-
T ss_pred HHHHHHCCC------EEEEECcHHHH-HHHHHHHHHcCCCCCC--CCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCCC-
Confidence 999999864 45556789997 7999999999987653 4789999988887755689999999999999764
Q ss_pred CCchHHHHHHHHHHHHHHHHhcC
Q 036883 162 VHCGLDDAINIARLLSVIMRRGF 184 (277)
Q Consensus 162 ~H~Al~DA~~ta~l~~~l~~~g~ 184 (277)
+|+|++||++|++||.+|++++.
T Consensus 155 ~H~Al~Da~~t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 155 HHRALDDARVTAQVFLRFVEMMK 177 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCC-
T ss_pred CcCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999987654
No 8
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.98 E-value=2.3e-32 Score=242.06 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=140.4
Q ss_pred CeEEEEEEccCCCCCCCCCCCcEEEEceEEEECCC-----------------CEEEeEEEEeecCCCCCCCChhhHhHhC
Q 036883 2 EYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVS-----------------GEIIACFQTYVRPTFEPLLTDFCKELTG 64 (277)
Q Consensus 2 ~~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~-----------------g~i~~~f~~lVrP~~~~~i~~~~~~ltG 64 (277)
+.|||||+||||+ ++..++|||||||+++... .+++++|+++|+|.. .|+++++++||
T Consensus 12 ~~~vv~D~ETTGl---~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~--~i~~~~~~i~G 86 (242)
T 3mxm_B 12 QTLIFLDLEATGL---PSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEITG 86 (242)
T ss_dssp SEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSS--CCCHHHHHHHC
T ss_pred ceEEEEEeecCCC---CCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCC--CCCHHHHHhcC
Confidence 5799999999986 3567999999999997320 067899999999985 59999999999
Q ss_pred CChHHHhCC--CCHH-HHHHHHHHHHhhcCCCCCcEEEEEec-cchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhc
Q 036883 65 IQQHQVDNG--ITLG-EALYFHDKWLLQMGLNNTNFSVVTWS-DWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVF 140 (277)
Q Consensus 65 It~~~l~~a--p~f~-evl~~f~~fl~~~~l~~~~~~vv~~~-~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~ 140 (277)
||+++|.++ |+|. +|+.+|.+|+++.. ....+|+||+ .||+ .||+++++++|++.+.....++|+..+++.++
T Consensus 87 It~~~l~~~g~p~~~~ev~~~~~~fl~~~~--~~~~lVaHNav~FD~-~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~ 163 (242)
T 3mxm_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKALE 163 (242)
T ss_dssp CCHHHHHHTTCCCSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHH
T ss_pred CCHHHHHhcCCCchhHHHHHHHHHHHhcCC--CCCEEEEcCChHhhH-HHHHHHHHHcCCCCCccCCeEeehHHHHHHHH
Confidence 999999988 9996 99999999999721 1124556676 9996 79999999999876422236899888777543
Q ss_pred ----C-----CCCCCHHHHHHH-hCCCCCCCCCchHHHHHHHHHHHHHHHHh
Q 036883 141 ----G-----DVRCNLKEAVEL-AGLIWQGRVHCGLDDAINIARLLSVIMRR 182 (277)
Q Consensus 141 ----~-----~~~~~L~~l~~~-~gi~~~~~~H~Al~DA~~ta~l~~~l~~~ 182 (277)
+ ..+++|++++++ ||++.. .+|+|++||++|++||.++.++
T Consensus 164 ~~~~p~~~~~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~ 214 (242)
T 3mxm_B 164 QASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQA 214 (242)
T ss_dssp HHHCC------CCCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHH
T ss_pred hhcCccccCCCCCcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHH
Confidence 2 357899999966 999976 4899999999999999987765
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.97 E-value=4e-31 Score=230.97 Aligned_cols=175 Identities=18% Similarity=0.134 Sum_probs=142.4
Q ss_pred eEEEEEEccCCCCCCCCCCCcEEEEceEEEECC-CCE--EEeEEEEeecCCCCCCCChhhHhHhCCChH-HHhCCCCHHH
Q 036883 3 YYVVIDFEATCDKERNLHPQEIIEFPSVVVSGV-SGE--IIACFQTYVRPTFEPLLTDFCKELTGIQQH-QVDNGITLGE 78 (277)
Q Consensus 3 ~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~-~g~--i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~-~l~~ap~f~e 78 (277)
.|||||+||||+ ++..++|||||||+++.. +|+ +.++|++||+|.....|+++++++||||++ ++++++++.+
T Consensus 30 ~~vviD~ETTGl---~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~~ 106 (224)
T 2f96_A 30 LPVVVDVETGGF---NSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEA 106 (224)
T ss_dssp EEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHH
T ss_pred cEEEEEeeCCCC---CCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHH
Confidence 589999999986 356689999999999732 576 468999999995334699999999999997 4899999999
Q ss_pred HHHHHHHHHhhcCC---CCCcEEEEEeccchHHHHHHHHHHHhCCCCCCC-CcchhhhHHHHhHhcCCCCCCHHHHHHHh
Q 036883 79 ALYFHDKWLLQMGL---NNTNFSVVTWSDWDCQVMLESECRIKKIQKPAY-FNQWINLRVPFSKVFGDVRCNLKEAVELA 154 (277)
Q Consensus 79 vl~~f~~fl~~~~l---~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~-~~~~iDl~~~~~~~~~~~~~~L~~l~~~~ 154 (277)
|+.+|.+||+.... .+...+|.|++.||+ .||+++|.++|++.+++ ..+++|+..+++.+++ .++|+.+++++
T Consensus 107 v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~-~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~--~~~L~~l~~~~ 183 (224)
T 2f96_A 107 ALTEIFRGIRKALKANGCKRAILVGHNSSFDL-GFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG--QTVLAKACQAA 183 (224)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEEETTHHHHH-HHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhcccCCCEEEEeChhhhH-HHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC--CCCHHHHHHHc
Confidence 99999999973200 011234445679997 79999999999874333 2579999999988876 46899999999
Q ss_pred CCCCCC-CCCchHHHHHHHHHHHHHHHHhc
Q 036883 155 GLIWQG-RVHCGLDDAINIARLLSVIMRRG 183 (277)
Q Consensus 155 gi~~~~-~~H~Al~DA~~ta~l~~~l~~~g 183 (277)
|++..+ .+|+|++||++|++||.+|+++-
T Consensus 184 gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~ 213 (224)
T 2f96_A 184 GMEFDNREAHSARYDTEKTAELFCGIVNRW 213 (224)
T ss_dssp TCCCCTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 998753 68999999999999999998763
No 10
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.97 E-value=8e-31 Score=239.50 Aligned_cols=172 Identities=11% Similarity=0.067 Sum_probs=139.7
Q ss_pred CeEEEEEEccCCCCCCCCCCCcEEEEceEEEECCC-----------------CEEEeEEEEeecCCCCCCCChhhHhHhC
Q 036883 2 EYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVS-----------------GEIIACFQTYVRPTFEPLLTDFCKELTG 64 (277)
Q Consensus 2 ~~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~-----------------g~i~~~f~~lVrP~~~~~i~~~~~~ltG 64 (277)
+.|||||+||||+ ++..++|||||+|+++... .+++++|+++|+|.. .|+++++++||
T Consensus 12 ~tfVv~DlETTGL---~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~--~I~~~a~~IhG 86 (314)
T 3u3y_B 12 QTLIFLDLEATGL---PSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEITG 86 (314)
T ss_dssp SEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSS--CCCHHHHHHHS
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCC--CCCHHHHHhcC
Confidence 5799999999986 3567999999999998321 046799999999985 59999999999
Q ss_pred CChHHHhCC--CCH-HHHHHHHHHHHhhcCCCCCcEEEEEe-ccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHh---
Q 036883 65 IQQHQVDNG--ITL-GEALYFHDKWLLQMGLNNTNFSVVTW-SDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFS--- 137 (277)
Q Consensus 65 It~~~l~~a--p~f-~evl~~f~~fl~~~~l~~~~~~vv~~-~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~--- 137 (277)
||++||+++ |+| +||+.+|.+|+++.. ....+|+|| ..||+ .||+++++++|++.+.....++|+..+++
T Consensus 87 IT~e~l~~aG~P~f~~ev~~~l~~fL~~~~--~~~vLVAHNga~FD~-~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~ 163 (314)
T 3u3y_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKALE 163 (314)
T ss_dssp CCHHHHHHTTCCBSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHH
T ss_pred CCHHHHHhCCCCCcHHHHHHHHHHHHhcCC--CCcEEEEeCcHHHHH-HHHHHHHHHcCCCCCCCCceEEeHHHHHHHHH
Confidence 999999998 899 799999999999731 112455667 59996 79999999999887533345888877555
Q ss_pred -HhcC-----CCCCCHHHHHHH-hCCCCCCCCCchHHHHHHHHHHHHHHHHh
Q 036883 138 -KVFG-----DVRCNLKEAVEL-AGLIWQGRVHCGLDDAINIARLLSVIMRR 182 (277)
Q Consensus 138 -~~~~-----~~~~~L~~l~~~-~gi~~~~~~H~Al~DA~~ta~l~~~l~~~ 182 (277)
..++ .++++|++++++ ||++.. ++|+|++||++|++||+++.++
T Consensus 164 r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 164 QASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp TTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHH
T ss_pred HHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 2232 257899999999 999976 5899999999999999988764
No 11
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=2.7e-30 Score=227.36 Aligned_cols=173 Identities=16% Similarity=0.106 Sum_probs=139.3
Q ss_pred CeEEEEEEccCCCCCCCCCCCcEEEEceEEEECC--------------CCEEEeEEEEeecCCCCCCCChhhHhHhCCCh
Q 036883 2 EYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGV--------------SGEIIACFQTYVRPTFEPLLTDFCKELTGIQQ 67 (277)
Q Consensus 2 ~~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~--------------~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~ 67 (277)
+.|||||+||||+. +..++|||||||+++.. .++++++|+++|+|.. .|+++++++||||+
T Consensus 10 ~~~v~iD~ETTGl~---~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~--~i~~~~~~i~GIt~ 84 (238)
T 1y97_A 10 ETFVFLDLEATGLP---SVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASEITGLSS 84 (238)
T ss_dssp SEEEEEEEEESSCG---GGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHHHHCCCH
T ss_pred CeEEEEEeeCCCcC---CCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCC--cCCHHHHHHhCCCH
Confidence 57999999999863 56799999999999842 1378899999999986 59999999999999
Q ss_pred HHH--hCCCCH-HHHHHHHHHHHhhcCCCCCcEEEEEec-cchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhc---
Q 036883 68 HQV--DNGITL-GEALYFHDKWLLQMGLNNTNFSVVTWS-DWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVF--- 140 (277)
Q Consensus 68 ~~l--~~ap~f-~evl~~f~~fl~~~~l~~~~~~vv~~~-~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~--- 140 (277)
++| .++|+| ++|+.+|.+|++... +...+|.||+ .||+ .||+++|.+.|+++|. ...++|+..+++.++
T Consensus 85 ~~l~~~~~p~f~~~v~~~l~~fl~~~~--~~~~lVahN~~~FD~-~fL~~~~~~~g~~~~~-~~~~iDt~~l~~~~~~~~ 160 (238)
T 1y97_A 85 EGLARCRKAGFDGAVVRTLQAFLSRQA--GPICLVAHNGFDYDF-PLLCAELRRLGARLPR-DTVCLDTLPALRGLDRAH 160 (238)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHTTSC--SSEEEEETTTTTTHH-HHHHHHHHHHTCCCCT-TCEEEEHHHHHHHHHHHC
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHhCC--CCCEEEecCchhhhH-HHHHHHHHHcCCCCCC-CCEEEEHHHHHHHHHhcc
Confidence 999 578999 599999999998631 1123444567 9996 7999999999987752 246899988888776
Q ss_pred ------C-CCCCCHHHHHH-HhCCCCCCCCCchHHHHHHHHHHHHHHHHhcC
Q 036883 141 ------G-DVRCNLKEAVE-LAGLIWQGRVHCGLDDAINIARLLSVIMRRGF 184 (277)
Q Consensus 141 ------~-~~~~~L~~l~~-~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~ 184 (277)
+ ..+++|+++++ ++|++.. .+|+|++||++|++||.+|.++..
T Consensus 161 ~p~~~~p~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 161 SHGTRARGRQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp ----------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHHHH
T ss_pred CccccCCCCCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHHHH
Confidence 3 35799999999 6999875 579999999999999999987543
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.97 E-value=2.4e-29 Score=221.09 Aligned_cols=176 Identities=19% Similarity=0.173 Sum_probs=144.3
Q ss_pred eEEEEEEccCCCCCCCCCCCcEEEEceEEEECC-CCE--EEeEEEEeecCCCCCCCChhhHhHhCCChH-HHhCCCCHHH
Q 036883 3 YYVVIDFEATCDKERNLHPQEIIEFPSVVVSGV-SGE--IIACFQTYVRPTFEPLLTDFCKELTGIQQH-QVDNGITLGE 78 (277)
Q Consensus 3 ~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~-~g~--i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~-~l~~ap~f~e 78 (277)
.||+||+||||+ ++..++|||||||+++.. +|+ +.++|++||+|.....|+++++++|||+++ ++++++++.+
T Consensus 38 ~~vviD~ETTGl---~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~~ 114 (235)
T 3v9w_A 38 YPVVIDVETAGF---NAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGYE 114 (235)
T ss_dssp EEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHHH
T ss_pred cEEEEEEeCCCC---CCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHH
Confidence 589999999986 456899999999998622 566 479999999996435699999999999999 9999999999
Q ss_pred HHHHHHHHHhhcCCC---CCcEEEEEeccchHHHHHHHHHHHhCCCCCCCC-cchhhhHHHHhHhcCCCCCCHHHHHHHh
Q 036883 79 ALYFHDKWLLQMGLN---NTNFSVVTWSDWDCQVMLESECRIKKIQKPAYF-NQWINLRVPFSKVFGDVRCNLKEAVELA 154 (277)
Q Consensus 79 vl~~f~~fl~~~~l~---~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~-~~~iDl~~~~~~~~~~~~~~L~~l~~~~ 154 (277)
|+.+|.+|+++.... +...+|.|++.||+ .||+.++.++|++.+++. ..++|+..+++.+++ .++|++++++|
T Consensus 115 vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~-~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p--~~~L~~l~~~~ 191 (235)
T 3v9w_A 115 ALHEIFKVVRKGIKASGCNRAIMVAHNANFDH-SFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKACQTA 191 (235)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEEETTTHHHH-HHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCcEEEEeChHHHH-HHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC--CCCHHHHHHHc
Confidence 999999999742100 11233445679997 799999999998753332 468999999988886 46999999999
Q ss_pred CCCCCC-CCCchHHHHHHHHHHHHHHHHhcC
Q 036883 155 GLIWQG-RVHCGLDDAINIARLLSVIMRRGF 184 (277)
Q Consensus 155 gi~~~~-~~H~Al~DA~~ta~l~~~l~~~g~ 184 (277)
|++..+ .+|+|++||++|++||.+|+++-.
T Consensus 192 gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 192 GMDFDSTQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp TCCCCTTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 999864 689999999999999999988643
No 13
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.95 E-value=1.2e-27 Score=201.80 Aligned_cols=164 Identities=16% Similarity=0.083 Sum_probs=121.6
Q ss_pred CeEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEe-EEEEeecCCCC--CCCChhhHh---HhCCChHHHhCCCC
Q 036883 2 EYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIA-CFQTYVRPTFE--PLLTDFCKE---LTGIQQHQVDNGIT 75 (277)
Q Consensus 2 ~~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~-~f~~lVrP~~~--~~i~~~~~~---ltGIt~~~l~~ap~ 75 (277)
.+||+||+||||+ ++..++|||||||+++. ++++++ +|++||+|... +.+++++++ +||||++||+++|+
T Consensus 5 ~~~v~iD~ETTGl---~~~~~~IieIg~v~~~~-~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~ 80 (180)
T 2igi_A 5 NNLIWIDLEMTGL---DPERDRIIEIATLVTDA-NLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMG 80 (180)
T ss_dssp GCEEEEEEEESSS---CTTTCCEEEEEEEEECT-TCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCC
T ss_pred CcEEEEEeeCCCC---CCCCCceEEEEEEEEcC-CCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCC
Confidence 3699999999986 45679999999999983 566665 49999999741 135666754 59999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEE-eccchHHHHHHHHHHHhCCCCCCCCcchhh--hH-HHHhHhcCCCCCCHHHHH
Q 036883 76 LGEALYFHDKWLLQMGLNNTNFSVVT-WSDWDCQVMLESECRIKKIQKPAYFNQWIN--LR-VPFSKVFGDVRCNLKEAV 151 (277)
Q Consensus 76 f~evl~~f~~fl~~~~l~~~~~~vv~-~~~fDl~~~L~~~~~~~gi~~p~~~~~~iD--l~-~~~~~~~~~~~~~L~~l~ 151 (277)
|++|+.+|.+|+++..-.+. .++|+ +..||+ .||++++.+.+..+ ..+++| +. .+.+++++. +.
T Consensus 81 ~~~v~~~~~~~l~~~~~~~~-~~lv~hn~~fD~-~fL~~~~~~~~~~~---~~~~~d~~tl~~l~~~~~p~----~~--- 148 (180)
T 2igi_A 81 DREAELATLEFLKQWVPAGK-SPICGNSIGQDR-RFLFKYMPELEAYF---HYRYLDVSTLKELARRWKPE----IL--- 148 (180)
T ss_dssp HHHHHHHHHHHHTTTSCTTT-SCEEESSHHHHH-HHHHHHCHHHHHHS---CSCEEETHHHHHHHHHHCGG----GG---
T ss_pred HHHHHHHHHHHHHHhCCCCC-ceEEecCHHHHH-HHHHHHHHHhccCC---CcceeeHHHHHHHHHHhChH----hh---
Confidence 99999999999986321111 23555 559996 79999998876332 346788 33 345554431 11
Q ss_pred HHhCCCCCCCCCchHHHHHHHHHHHHHHHHhcC
Q 036883 152 ELAGLIWQGRVHCGLDDAINIARLLSVIMRRGF 184 (277)
Q Consensus 152 ~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~ 184 (277)
.|++.. .+|+|++||++|++||++++++-.
T Consensus 149 --~~i~~~-~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 149 --DGFTKQ-GTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp --GGSCCC-CCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred --hCCCCc-CCcCcHHHHHHHHHHHHHHHHHhh
Confidence 367543 589999999999999999987643
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.94 E-value=7.9e-28 Score=205.07 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=122.4
Q ss_pred CeEEEEEEccCCCCCCCCCC-CcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHH
Q 036883 2 EYYVVIDFEATCDKERNLHP-QEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEAL 80 (277)
Q Consensus 2 ~~~vviDlETTg~~~~~~~~-~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl 80 (277)
.+|||||+||||+. +.. .+|||||+|.. +|+++ |++||+|.. .|+++++++||||+++|++||+|++|+
T Consensus 5 ~~~vviD~ETTGl~---~~~~~~iiei~~v~~---~g~~i--~~~lV~P~~--~i~~~~~~i~GIt~~~l~~a~~~~~v~ 74 (189)
T 1wlj_A 5 REVVAMDCEMVGLG---PHRESGLARCSLVNV---HGAVL--YDKFIRPEG--EITDYRTRVSGVTPQHMVGATPFAVAR 74 (189)
T ss_dssp -CEEEEEEEEEEET---TTTEEEEEEEEEECT---TCCEE--EEEEEECSS--CEEECCHHHHCCCHHHHTTCEEHHHHH
T ss_pred CeEEEEEeECcCcC---CCCCceEEEEEEEeC---CCCEE--EeeEecCCC--CCCccccCCCCCCHHHHcCCCCHHHHH
Confidence 36999999999863 333 58899998743 67776 999999985 599999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHh--H--hcC-CCCCCHHHHHHH-h
Q 036883 81 YFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFS--K--VFG-DVRCNLKEAVEL-A 154 (277)
Q Consensus 81 ~~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~--~--~~~-~~~~~L~~l~~~-~ 154 (277)
.+|.+|+++. .+|.|++.||+ .||+.+ .|. ..++|+..++. + .++ ..+++|++++++ +
T Consensus 75 ~~~~~~l~~~------~lV~hn~~fD~-~~L~~~-------~~~--~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~l 138 (189)
T 1wlj_A 75 LEILQLLKGK------LVVGHDLKHDF-QALKED-------MSG--YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLL 138 (189)
T ss_dssp HHHHHHHTTS------EEEESSHHHHH-HHTTCC-------CTT--CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHT
T ss_pred HHHHHHHCCC------EEEECCcHHHH-HHHHHh-------CCC--CceechHhhhhhhhcccCCCCCCccHHHHHHHHc
Confidence 9999999863 44555678997 688643 332 35788776532 2 232 257899999998 8
Q ss_pred CCCCCCC--CCchHHHHHHHHHHHHHHHHhc
Q 036883 155 GLIWQGR--VHCGLDDAINIARLLSVIMRRG 183 (277)
Q Consensus 155 gi~~~~~--~H~Al~DA~~ta~l~~~l~~~g 183 (277)
|++..+. +|+|++||++|++||.+++++-
T Consensus 139 gi~~~~~~~~H~Al~Da~ata~l~~~l~~~~ 169 (189)
T 1wlj_A 139 HKSIQNSLLGHSSVEDARATMELYQISQRIR 169 (189)
T ss_dssp CCCCSCCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 9998654 8999999999999999998753
No 15
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.94 E-value=1.5e-26 Score=222.74 Aligned_cols=170 Identities=11% Similarity=0.063 Sum_probs=133.1
Q ss_pred CeEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeE-EEEeecCCCCCC-CChhhHhHhCCChHHHhCCCC-HHH
Q 036883 2 EYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIAC-FQTYVRPTFEPL-LTDFCKELTGIQQHQVDNGIT-LGE 78 (277)
Q Consensus 2 ~~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~-f~~lVrP~~~~~-i~~~~~~ltGIt~~~l~~ap~-f~e 78 (277)
..|||||+||||+ ++..++|||||||+++ .+|+++++ |++||+|.. +. .++.+.++||||+++|.+++. +.+
T Consensus 9 ~~~vv~DlETTGl---~p~~d~IIEIgaV~vd-~~g~ii~~~f~~lVkP~~-~ilp~p~a~~IhGIT~e~l~~ap~~~~e 83 (482)
T 2qxf_A 9 STFLFHDYETFGT---HPALDRPAQFAAIRTD-SEFNVIGEPEVFYCKPAD-DYLPQPGAVLITGITPQEARAKGENEAA 83 (482)
T ss_dssp CEEEEEEEEESSS---CTTTSCEEEEEEEEEC-TTSCBCSCCEEEEBCCCT-TCCCCHHHHHHHCCCHHHHHHHCBCHHH
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEE-CCCeEEeeeeEEEECCCC-CCCCCHHHHHHhCCCHHHHhcCCCCHHH
Confidence 3699999999986 4567999999999998 47777777 999999986 32 268888999999999987555 599
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEE-e-ccchHHHHHHHHHHHhCCCCCC--C--CcchhhhHHHHhHhc------------
Q 036883 79 ALYFHDKWLLQMGLNNTNFSVVT-W-SDWDCQVMLESECRIKKIQKPA--Y--FNQWINLRVPFSKVF------------ 140 (277)
Q Consensus 79 vl~~f~~fl~~~~l~~~~~~vv~-~-~~fDl~~~L~~~~~~~gi~~p~--~--~~~~iDl~~~~~~~~------------ 140 (277)
|+.+|.+|++.. ..++|+ + ..||+ .||+.+|.+.|++... | .+.++|+..+++..+
T Consensus 84 vl~~f~~~l~~~-----~~~lVaHNs~~FD~-~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~ 157 (482)
T 2qxf_A 84 FAARIHSLFTVP-----KTCILGYNNVRFDD-EVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEN 157 (482)
T ss_dssp HHHHHHHHHTST-----TEEEEESSTTTTHH-HHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBC
T ss_pred HHHHHHHHHcCC-----CCEEEEECCHHHHH-HHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCccc
Confidence 999999999831 124555 4 48996 7999999999876321 1 145678777766544
Q ss_pred --CCCCCCHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHHhc
Q 036883 141 --GDVRCNLKEAVELAGLIWQGRVHCGLDDAINIARLLSVIMRRG 183 (277)
Q Consensus 141 --~~~~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g 183 (277)
+..+++|+++++++||+.. .+|+|++||++|+.||.+|.++.
T Consensus 158 ~~~~~s~kL~~L~~~~Gi~~~-~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 158 DDGLPSFRLEHLTKANGIEHS-NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp TTSSBCCCHHHHHHHTTCCCC----CTTHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 2346899999999999875 57999999999999999998764
No 16
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.94 E-value=6e-27 Score=200.48 Aligned_cols=165 Identities=13% Similarity=0.071 Sum_probs=120.1
Q ss_pred CeEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCC-EEEeEEEEeecCCCC--CCCChhhHhH---hCCChHHHhCCCC
Q 036883 2 EYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSG-EIIACFQTYVRPTFE--PLLTDFCKEL---TGIQQHQVDNGIT 75 (277)
Q Consensus 2 ~~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g-~i~~~f~~lVrP~~~--~~i~~~~~~l---tGIt~~~l~~ap~ 75 (277)
..||+||+||||+ ++..++|||||||+.++ ++ .+.++|+++|+|... +.+++++.++ ||||+++++++|+
T Consensus 9 ~~~vviD~ETTGl---~p~~d~IieIgav~~~~-~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~ 84 (194)
T 2gbz_A 9 DRLIWIDLEMTGL---DTDRDSIIEIATIVTDA-QLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVT 84 (194)
T ss_dssp CEEEEEEEEESCS---CTTTCCEEEEEEEEEET-TCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCC
T ss_pred CCEEEEEeECCCC---CCCCCccEEEEEEEEcC-CcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCC
Confidence 4699999999986 46679999999999773 33 344679999999741 1135555555 9999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHH---HhHhcCCCCCCHHHHHH
Q 036883 76 LGEALYFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVP---FSKVFGDVRCNLKEAVE 152 (277)
Q Consensus 76 f~evl~~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~---~~~~~~~~~~~L~~l~~ 152 (277)
|.+|+.+|.+|+++....+...++.|++.||+ .||++++.+.+.. +..+.+|+..+ .+++++. +++
T Consensus 85 ~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~-~fL~~~~~~~~~~---~~~~~~d~~~l~~l~~~~~p~-------~~~ 153 (194)
T 2gbz_A 85 HAQAEAQTVAFLGEWIRAGASPMCGNSICQDR-RFLHRQMSRLERY---FHYRNLDVSTIKELARRWAPA-------VAS 153 (194)
T ss_dssp HHHHHHHHHHHHTTTCCTTSSCEEESSHHHHH-HHHHHHCHHHHHH---SCSCEEEHHHHHHHHHHHCGG-------GGT
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEecCHHHhH-HHHHHHHHHhccc---CCCccccHHHHHHHHHHhCHH-------HHh
Confidence 99999999999998632222234556779996 7999999887632 22456776533 2222211 111
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHHHHHhcC
Q 036883 153 LAGLIWQGRVHCGLDDAINIARLLSVIMRRGF 184 (277)
Q Consensus 153 ~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~ 184 (277)
+++.. .+|+|++||++|++||..+.++-.
T Consensus 154 --~i~~~-~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 154 --GFAKS-SAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp --TCCCC-SCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred --CCCCC-CCcccHHHHHHHHHHHHHHHHHhc
Confidence 35543 589999999999999999987644
No 17
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.93 E-value=7.9e-26 Score=192.63 Aligned_cols=166 Identities=13% Similarity=0.039 Sum_probs=120.7
Q ss_pred CeEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEE-EEeec-CCC-CCCCChh---hHhHhCCChHHHhCCCC
Q 036883 2 EYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACF-QTYVR-PTF-EPLLTDF---CKELTGIQQHQVDNGIT 75 (277)
Q Consensus 2 ~~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f-~~lVr-P~~-~~~i~~~---~~~ltGIt~~~l~~ap~ 75 (277)
+.||+||+||||+ ++..++|||||||+.| .++++++++ +.+|+ |.. ...+++. +..+||||+++++++|+
T Consensus 9 ~~~v~~D~ETTGL---~p~~d~IiEIgaV~~d-~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~ 84 (186)
T 3tr8_A 9 DNLIWLDLEMTGL---DPERDRIIEIATIVTN-SHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD 84 (186)
T ss_dssp TCEEEEEEEESSS---CTTTCCEEEEEEEEEC-TTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred CcEEEEEEECCCC---CCCCCceEEEEEEEEc-CCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence 4799999999986 5678999999999776 345666665 55686 541 0123555 44567999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhh--hHH-HHhHhcCCCCCCHHHHHH
Q 036883 76 LGEALYFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWIN--LRV-PFSKVFGDVRCNLKEAVE 152 (277)
Q Consensus 76 f~evl~~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iD--l~~-~~~~~~~~~~~~L~~l~~ 152 (277)
+++|+.+|++|+++....+...++.|+..||+ .||++++.+.|..+ .++.+| +.. +.+++++. +..
T Consensus 85 ~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~-~FL~~~~~~~~~~~---~~~~iDvsTl~elar~~~P~----~~~--- 153 (186)
T 3tr8_A 85 EVEAETLTLAFLEKYVSAGKSPLCGNSVCQDR-RFLSRYMPRLNQFF---HYRHLDVTTLKILAQRWAPQ----IAA--- 153 (186)
T ss_dssp HHHHHHHHHHHHTTTSCTTCSCEEESSTHHHH-HHHHHHCHHHHHHS---CSCEEEHHHHHHHHHHHCHH----HHT---
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcHHHhH-HHHHHHHHHcCCCC---CCcEEeHHHHHHHHHHHCcc----ccc---
Confidence 99999999999954322122234455779996 89999998877433 357899 443 66666542 221
Q ss_pred HhCCCCCCCCCchHHHHHHHHHHHHHHHHhcCc
Q 036883 153 LAGLIWQGRVHCGLDDAINIARLLSVIMRRGFK 185 (277)
Q Consensus 153 ~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~ 185 (277)
+++.. .+|+||+||++|..++..+.+.-++
T Consensus 154 --~~~~~-~~HrAl~Da~ati~~l~~y~~~~~~ 183 (186)
T 3tr8_A 154 --AHIKE-SQHLALQDIRDSIEELRYYRAHLLN 183 (186)
T ss_dssp --TSCCC-CCSCHHHHHHHHHHHHHHHHHHTBC
T ss_pred --cCCCC-CCcChHHHHHHHHHHHHHHHHHhhc
Confidence 67654 5899999999999999999886543
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=99.04 E-value=3.8e-10 Score=95.68 Aligned_cols=153 Identities=17% Similarity=0.117 Sum_probs=94.6
Q ss_pred EEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHh--HhCCChHHHhCCCCHHHHHH
Q 036883 4 YVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKE--LTGIQQHQVDNGITLGEALY 81 (277)
Q Consensus 4 ~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~--ltGIt~~~l~~ap~f~evl~ 81 (277)
-+++|+|+|+. ....++|+||+|. ++|+ +|+..+..-.....+++..+ +.++.+.......++.++..
T Consensus 24 r~FlDTEFt~d----~~~~eLISIGlV~---EdGr---EFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~~ 93 (190)
T 4hec_A 24 RYFYDTEFIED----GHTIELISIGVVA---EDGR---EYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRL 93 (190)
T ss_dssp EEEEEEEEEEC----SSCEEEEEEEEEE---TTSC---EEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHHH
T ss_pred EEEEeeeecCC----CCCCCEEEEEEEc---CCCC---EEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHHH
Confidence 37899999962 3568999999985 4675 47766543211346777766 57777655666789999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEe-ccchHHHHHHHHHHHhCCCCCCCC-cchhhhHHHHhHhcCCCCCCHHHHHHHhCCC-C
Q 036883 82 FHDKWLLQMGLNNTNFSVVTW-SDWDCQVMLESECRIKKIQKPAYF-NQWINLRVPFSKVFGDVRCNLKEAVELAGLI-W 158 (277)
Q Consensus 82 ~f~~fl~~~~l~~~~~~vv~~-~~fDl~~~L~~~~~~~gi~~p~~~-~~~iDl~~~~~~~~~~~~~~L~~l~~~~gi~-~ 158 (277)
+|.+||...+ +....|++| +.||. .+|...+... ..+|... ....|++.++... + ...++ .
T Consensus 94 ~L~~FL~~~~--~~~~eLwa~~~~yD~-~~L~ql~g~m-~~lP~~~p~~~~dlr~~~~~~-g-----------~~~lp~~ 157 (190)
T 4hec_A 94 DLEEFLRIDG--TDSIELWAWVGAYDH-VALCQLWGPM-TALPPTVPRFTRELRQLWEDR-G-----------CPRMPPR 157 (190)
T ss_dssp HHHHHTTTTS--SCEEEEEESSCHHHH-HHHHTTTSSG-GGSCTTSCSSCEEHHHHHHHT-T-----------CCCCCC-
T ss_pred HHHHHHHhcC--CCCCEEEEecccccH-HHHHHHhccc-ccCCcccchhhHHHHHHHHHc-C-----------CCCCCCC
Confidence 9999997642 223446666 57995 6776544321 1122211 2234555543221 1 11122 2
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHh
Q 036883 159 QGRVHCGLDDAINIARLLSVIMRR 182 (277)
Q Consensus 159 ~~~~H~Al~DA~~ta~l~~~l~~~ 182 (277)
.+.+|+||.||+..+..|+.|...
T Consensus 158 ~~~~H~AL~DAR~n~~~~~~~~~~ 181 (190)
T 4hec_A 158 PRDVHDALVDARDQLRRFRLITST 181 (190)
T ss_dssp ----CCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCcCcHHHHHHHHHHHHHHhCc
Confidence 345799999999999999998653
No 19
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.84 E-value=1.4e-07 Score=84.70 Aligned_cols=171 Identities=19% Similarity=0.168 Sum_probs=117.2
Q ss_pred eEEEEEEccCCCCCCCC------------------CCCcEEEEceEEEECCCCE-----EEeEEEEeecCCCCCCCChhh
Q 036883 3 YYVVIDFEATCDKERNL------------------HPQEIIEFPSVVVSGVSGE-----IIACFQTYVRPTFEPLLTDFC 59 (277)
Q Consensus 3 ~~vviDlETTg~~~~~~------------------~~~eIIEIgAV~vd~~~g~-----i~~~f~~lVrP~~~~~i~~~~ 59 (277)
.||.+|+|.+|+-.... ..-.|||||....+. +|+ ..-.|+.+..|... ...+.+
T Consensus 35 ~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~-~g~~p~~~~~wqFNF~f~~~~d-~~~~~S 112 (285)
T 4gmj_B 35 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNE-QGEYPPGTSTWQFNFKFNLTED-MYAQDS 112 (285)
T ss_dssp CEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECT-TSCCCSSCCEEEEEBCCCTTTS-CCCHHH
T ss_pred CEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeecc-CCCcCCCeeEEEEEEEeccccc-cccHHH
Confidence 58999999999732110 112599999999984 443 34678888888753 456666
Q ss_pred HhH---hCCChHHH-hCCCCHHHHHHHHHHHHhhcCCC--CCcEEEEEeccchHHHHHHHHHHHhCCCCCC---------
Q 036883 60 KEL---TGIQQHQV-DNGITLGEALYFHDKWLLQMGLN--NTNFSVVTWSDWDCQVMLESECRIKKIQKPA--------- 124 (277)
Q Consensus 60 ~~l---tGIt~~~l-~~ap~f~evl~~f~~fl~~~~l~--~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~--------- 124 (277)
.++ +||+=+.. ..+.+..+ |.+.+...++. .....|+.|+.+|+ .+|-+.+... ++|.
T Consensus 113 I~fL~~~G~DF~k~~~~GI~~~~----f~ell~~sglvl~~~v~WvtfH~~yDf-~yL~k~lt~~--~LP~~~~eF~~~l 185 (285)
T 4gmj_B 113 IELLTTSGIQFKKHEEEGIETQY----FAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILTNS--NLPEEELDFFEIL 185 (285)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHH----HHHHHHTSSSSSCTTCEEEESSCHHHH-HHHHHHHHTS--CCCSSHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHcCCCHHH----HHHHHHHhHHHhcCCCceEEecchhhH-HHHHHHHhCC--CCCCCHHHHHHHH
Confidence 665 88887766 46777654 55555555443 22334556788998 6887776533 4453
Q ss_pred --CCcchhhhHHHHhHhcCCCCCCHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHHhc
Q 036883 125 --YFNQWINLRVPFSKVFGDVRCNLKEAVELAGLIWQGRVHCGLDDAINIARLLSVIMRRG 183 (277)
Q Consensus 125 --~~~~~iDl~~~~~~~~~~~~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g 183 (277)
+|....|++.+.+.. .....+|+++++.++++..+..|.|-.|++.|+.+|.+|.+.-
T Consensus 186 ~~~FP~vYD~K~l~~~~-~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~ 245 (285)
T 4gmj_B 186 RLFFPVIYDVKYLMKSC-KNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 245 (285)
T ss_dssp HHHCSCEEEHHHHGGGS-TTCCSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCchhhhHHHHHHhc-cccCChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 223345655554332 2224589999999999988889999999999999999998754
No 20
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.58 E-value=5.1e-07 Score=89.15 Aligned_cols=143 Identities=14% Similarity=0.067 Sum_probs=98.7
Q ss_pred eEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHHHH
Q 036883 3 YYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEALYF 82 (277)
Q Consensus 3 ~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl~~ 82 (277)
.+|+||+|||+. ++..++|++|+++. . +|+. .|| |.....+ | +.+++++.+++..
T Consensus 27 ~~va~DtEttgl---~~~~~~iv~I~~~~-~--~g~~-----~yi-p~~~~~~--------~-----~~~~l~~~~vl~~ 81 (605)
T 2kfn_A 27 PVFAFDTETDSL---DNISANLVGLSFAI-E--PGVA-----AYI-PVAHDYL--------D-----APDQISRERALEL 81 (605)
T ss_dssp SSEEEEEEESCS---CTTTCCEEEEEEEE-E--TTEE-----EEE-ECCCCST--------T-----CCCCCCHHHHHHH
T ss_pred CeEEEEEecCCC---CcccCceEEEEEEE-c--CCcE-----EEE-ecccccc--------c-----cccccCHHHHHHH
Confidence 468999999975 35578999999885 3 4543 355 3211111 2 2346678999999
Q ss_pred HHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCC-CCCCHHHHHHHh-CCCCC-
Q 036883 83 HDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGD-VRCNLKEAVELA-GLIWQ- 159 (277)
Q Consensus 83 f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~-~~~~L~~l~~~~-gi~~~- 159 (277)
|.+|+++... ..+.|++.||+ .+|.+ +|+..+ ..++|+......+.+. .+++|+++++.| |+...
T Consensus 82 L~~~L~d~~i----~kV~hnak~D~-~~L~~----~Gi~l~---~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~ 149 (605)
T 2kfn_A 82 LKPLLEDEKA----LKVGQNLKYDR-GILAN----YGIELR---GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTIT 149 (605)
T ss_dssp HHHHHTCTTS----CEEESSHHHHH-HHHHT----TTCCCC---CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCC
T ss_pred HHHHHcCCCC----eEEEECcHHHH-HHHHH----CCCCCC---CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCccc
Confidence 9999988532 34667789997 68864 577654 3578988766555543 478999999988 76521
Q ss_pred -------CC-------------CCchHHHHHHHHHHHHHHHHh
Q 036883 160 -------GR-------------VHCGLDDAINIARLLSVIMRR 182 (277)
Q Consensus 160 -------~~-------------~H~Al~DA~~ta~l~~~l~~~ 182 (277)
+. .|.|..||.+++.|+..|..+
T Consensus 150 ~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~ 192 (605)
T 2kfn_A 150 FEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPD 192 (605)
T ss_dssp HHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 145889999999988877654
No 21
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.57 E-value=3.8e-06 Score=74.04 Aligned_cols=173 Identities=19% Similarity=0.166 Sum_probs=117.2
Q ss_pred eEEEEEEccCCCCCCC------------------CCCCcEEEEceEEEECCCCEE-----EeEEEEeecCCCCCCCChhh
Q 036883 3 YYVVIDFEATCDKERN------------------LHPQEIIEFPSVVVSGVSGEI-----IACFQTYVRPTFEPLLTDFC 59 (277)
Q Consensus 3 ~~vviDlETTg~~~~~------------------~~~~eIIEIgAV~vd~~~g~i-----~~~f~~lVrP~~~~~i~~~~ 59 (277)
.||.+|+|.+|+.... ...-.|||+|....| .+|+. .-.|+.+..... ....+.+
T Consensus 25 ~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~-~~g~~p~~~~~wqFNF~F~~~~-d~~~~~S 102 (252)
T 2d5r_A 25 NYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTE-DMYAQDS 102 (252)
T ss_dssp CEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTT-SCCCHHH
T ss_pred CEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHHH
Confidence 5899999999974221 022579999999998 45553 466777655543 2345555
Q ss_pred HhH---hCCChHHH-hCCCCHHHHHHHHHHHHhhcCCC-CCcEEEE-EeccchHHHHHHHHHHHhCCCCCCC--------
Q 036883 60 KEL---TGIQQHQV-DNGITLGEALYFHDKWLLQMGLN-NTNFSVV-TWSDWDCQVMLESECRIKKIQKPAY-------- 125 (277)
Q Consensus 60 ~~l---tGIt~~~l-~~ap~f~evl~~f~~fl~~~~l~-~~~~~vv-~~~~fDl~~~L~~~~~~~gi~~p~~-------- 125 (277)
.++ +||.=+.. .+|.+..+ |.+.+-.++++ ..+...+ .|+.+|+ .+|-+-+. +-++|.-
T Consensus 103 i~fL~~~G~DF~k~~~~GI~~~~----F~ell~~sglvl~~~v~Witfhg~yDf-~yL~k~L~--~~~LP~~~~~F~~~l 175 (252)
T 2d5r_A 103 IELLTTSGIQFKKHEEEGIETQY----FAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILT--NSNLPEEELDFFEIL 175 (252)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHH----HHHHHHTTTSSSSSSCEEEESSCHHHH-HHHHHHHH--TSCCCSSHHHHHHHH
T ss_pred HHHHHHcCCChhHHHhcCCCHHH----HHHHHHhcCcccCCCceEEEecCcchH-HHHHHHhc--CCCCCCCHHHHHHHH
Confidence 554 78888776 57888774 55666566553 2333344 4788997 67776655 3455532
Q ss_pred ---CcchhhhHHHHhHhcCCCCCCHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHHhcCc
Q 036883 126 ---FNQWINLRVPFSKVFGDVRCNLKEAVELAGLIWQGRVHCGLDDAINIARLLSVIMRRGFK 185 (277)
Q Consensus 126 ---~~~~iDl~~~~~~~~~~~~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~ 185 (277)
|....|++-+.+..-+ -..+|+++++.+|++..+..|.|-.|++.|+.+|.+|.+....
T Consensus 176 ~~~FP~iyD~K~l~~~~~~-l~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f~ 237 (252)
T 2d5r_A 176 RLFFPVIYDVKYLMKSCKN-LKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 237 (252)
T ss_dssp HHHCSCEEEHHHHGGGCTT-CCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHCcchhhHHHHHHHhcc-cCCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhcC
Confidence 2234455544433222 2457999999999998888999999999999999999887643
No 22
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.51 E-value=6.3e-06 Score=75.10 Aligned_cols=170 Identities=21% Similarity=0.211 Sum_probs=115.2
Q ss_pred eEEEEEEccCCCCCCCC------------------CCCcEEEEceEEEECCCCEE-----EeEEEEeecCCCCCCCChhh
Q 036883 3 YYVVIDFEATCDKERNL------------------HPQEIIEFPSVVVSGVSGEI-----IACFQTYVRPTFEPLLTDFC 59 (277)
Q Consensus 3 ~~vviDlETTg~~~~~~------------------~~~eIIEIgAV~vd~~~g~i-----~~~f~~lVrP~~~~~i~~~~ 59 (277)
.||.+|+|.+|+..... ..-.|||||....| .+|+. ...|+.+..... ....+.+
T Consensus 46 ~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd-~~G~~p~~~~twqFNF~F~~~~-d~~~~~S 123 (333)
T 2p51_A 46 PVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSD-EEGNAPVEACTWQFNFTFNLQD-DMYAPES 123 (333)
T ss_dssp CEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEEC-TTSCCCTTCSEEEEEBCCCTTT-SCCCHHH
T ss_pred CEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHHH
Confidence 58999999999742211 11369999999998 45654 566777755543 2345555
Q ss_pred HhH---hCCChHHH-hCCCCHHHHHHHHHHHHhhcCCC-CCcEEEE-EeccchHHHHHHHHHHHhCCCCCCC--------
Q 036883 60 KEL---TGIQQHQV-DNGITLGEALYFHDKWLLQMGLN-NTNFSVV-TWSDWDCQVMLESECRIKKIQKPAY-------- 125 (277)
Q Consensus 60 ~~l---tGIt~~~l-~~ap~f~evl~~f~~fl~~~~l~-~~~~~vv-~~~~fDl~~~L~~~~~~~gi~~p~~-------- 125 (277)
.++ +||.=+.. .+|.++.+ |.+.|-..+++ +.+...+ .++.+|+ .+|-+-+. +-++|.-
T Consensus 124 I~fL~~~G~DF~k~~~~GI~~~~----F~elL~~SGLvl~~~V~Witfhg~YDf-gyLlK~Lt--~~~LP~~~~eF~~~l 196 (333)
T 2p51_A 124 IELLTKSGIDFKKHQEVGIEPAD----FAELLIGSGLVLQEEVTWITFHSGYDF-AYLLKAMT--QIPLPAEYEEFYKIL 196 (333)
T ss_dssp HHHHHHTTCCHHHHHHHCBCHHH----HHHHHHTTTSSSCTTCEEEESSCHHHH-HHHHHHHH--CSCCCSSHHHHHHHH
T ss_pred HHHHHHcCCChhHHHHcCCCHHH----HHHHHHhcCcccCCCceEEEeccchhH-HHHHHHhc--CCCCCCCHHHHHHHH
Confidence 554 69988876 57888874 55555555553 2233334 3688997 67776654 3455632
Q ss_pred ---CcchhhhHHHHhHhcCCCCCCHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHHh
Q 036883 126 ---FNQWINLRVPFSKVFGDVRCNLKEAVELAGLIWQGRVHCGLDDAINIARLLSVIMRR 182 (277)
Q Consensus 126 ---~~~~iDl~~~~~~~~~~~~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~ 182 (277)
|....|++-+.+...+ -..+|+++++.+|++..+..|.|-.|++.|+.+|.+|.+.
T Consensus 197 ~~~FP~iYD~K~l~~~~~~-l~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~ 255 (333)
T 2p51_A 197 CIYFPKNYDIKYIMKSVLN-NSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSR 255 (333)
T ss_dssp HHHSSSEEEHHHHHTTTTC-CCCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHCcchhhHHHHHHHhcc-ccCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHH
Confidence 2334455554443222 2458999999999998899999999999999999999874
No 23
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.46 E-value=5.6e-06 Score=74.29 Aligned_cols=173 Identities=15% Similarity=0.141 Sum_probs=115.5
Q ss_pred eEEEEEEccCCCCCCC------------------CCCCcEEEEceEEEECCCCEE------EeEEEEeecCCCCCCCChh
Q 036883 3 YYVVIDFEATCDKERN------------------LHPQEIIEFPSVVVSGVSGEI------IACFQTYVRPTFEPLLTDF 58 (277)
Q Consensus 3 ~~vviDlETTg~~~~~------------------~~~~eIIEIgAV~vd~~~g~i------~~~f~~lVrP~~~~~i~~~ 58 (277)
.||.+|+|.+|..... ...-.|||+|....| .+|+. .-.|+.+..... ....+.
T Consensus 39 ~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~-~~g~~p~~~~~~wqFNF~F~~~~-d~~~~~ 116 (289)
T 1uoc_A 39 NHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSD-ANGNKPDNGPSTWQFNFEFDPKK-EIMSTE 116 (289)
T ss_dssp CEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEEC-TTCCCCSSSCSEEEEEBCCCTTC-CCCCHH
T ss_pred CEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCcCCCCcceEEEEEEECCcc-ccccHH
Confidence 5899999999974211 123579999999998 45543 466777654443 234555
Q ss_pred hHhH---hCCChHHH-hCCCCHHHHHHHHHHHHhhcCCC-CCcEEEEE-eccchHHHHHHHHHHHhCCCCCC--------
Q 036883 59 CKEL---TGIQQHQV-DNGITLGEALYFHDKWLLQMGLN-NTNFSVVT-WSDWDCQVMLESECRIKKIQKPA-------- 124 (277)
Q Consensus 59 ~~~l---tGIt~~~l-~~ap~f~evl~~f~~fl~~~~l~-~~~~~vv~-~~~fDl~~~L~~~~~~~gi~~p~-------- 124 (277)
+.++ +||.=+.. .++.+.. +|.+.+-.++++ ..+...++ |+.+|+ .+|-+-+.. -++|.
T Consensus 117 SI~fL~~~G~DF~k~~~~GI~~~----~F~ell~~sgLvl~~~v~Witfhg~yDf-gyL~k~Lt~--~~LP~~~~~F~~~ 189 (289)
T 1uoc_A 117 SLELLRKSGINFEKHENLGIDVF----EFSQLLMDSGLMMDDSVTWITYHAAYDL-GFLINILMN--DSMPNNKEDFEWW 189 (289)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHH----HHHHHHHTSSCSSCTTSEEEESSTTHHH-HHHHHHHTT--SCCCSSHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHcCCCHH----HHHHHHHhcCCccCCCceEEEccCcchH-HHHHHHhcc--ccCCcCHHHHHHH
Confidence 5543 78887776 5788876 566666666654 23334444 788997 677766543 34553
Q ss_pred ---CCcchhhhHHHHhHhcCC--------------CCCCHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHHHHhcC
Q 036883 125 ---YFNQWINLRVPFSKVFGD--------------VRCNLKEAVELAGLIWQGRVHCGLDDAINIARLLSVIMRRGF 184 (277)
Q Consensus 125 ---~~~~~iDl~~~~~~~~~~--------------~~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~ 184 (277)
+|....|++-+.+...+. ...+|+++++.+|++..+..|.|-.|++.|+.+|.+|.+...
T Consensus 190 l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~~ 266 (289)
T 1uoc_A 190 VHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLSM 266 (289)
T ss_dssp HHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHHh
Confidence 233466777665443221 135799999999999888899999999999999999997653
No 24
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=98.09 E-value=5.8e-05 Score=76.50 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=101.6
Q ss_pred eEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHHHH
Q 036883 3 YYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEALYF 82 (277)
Q Consensus 3 ~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl~~ 82 (277)
+++.||+||++..+.++..++||.|+.+.- ++..+ +. .+| |....+...++..+.+.+
T Consensus 136 ~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~---~~~~~--~t--~~~---------------i~~~~v~~~~~E~~LL~~ 193 (775)
T 1qht_A 136 TMLAFAIATLYHEGEEFGTGPILMISYADG---SEARV--IT--WKK---------------IDLPYVDVVSTEKEMIKR 193 (775)
T ss_dssp CEEEEEEEECCCTTCCTTCSCEEEEEEECS---SCEEE--EE--SSC---------------CCCSSEEECSCHHHHHHH
T ss_pred EEEEEEEEEcCCCCCCCCCCcEEEEEEEec---CCCee--Ee--ecc---------------ccccceEEcCCHHHHHHH
Confidence 578999999985444567899999986521 22221 11 122 111235557788999999
Q ss_pred HHHHHhhcCCCCCcEEEEEe-c-cchHHHHHHHHHHHhCCCCCCC---------------------CcchhhhHHHHhHh
Q 036883 83 HDKWLLQMGLNNTNFSVVTW-S-DWDCQVMLESECRIKKIQKPAY---------------------FNQWINLRVPFSKV 139 (277)
Q Consensus 83 f~~fl~~~~l~~~~~~vv~~-~-~fDl~~~L~~~~~~~gi~~p~~---------------------~~~~iDl~~~~~~~ 139 (277)
|.+++..... + ++++| + .||+ .+|...+..+|++.+ + ....+|+..++++.
T Consensus 194 f~~~i~~~dP---D-iivGyN~~~FDl-pyL~~Ra~~~gi~~~-lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~ 267 (775)
T 1qht_A 194 FLRVVREKDP---D-VLITYNGDNFDF-AYLKKRCEELGIKFT-LGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRT 267 (775)
T ss_dssp HHHHHHHHCC---S-EEEESSTTTTHH-HHHHHHHHHTTCCCC-CSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHH
T ss_pred HHHHHHhcCC---C-EEEEeCCCCccH-HHHHHHHHHcCCCcc-cccCCCcCceeecCceeeEEecCeEEEEHHHHHHHh
Confidence 9999987631 2 46665 4 7997 799888888887753 1 12356998888887
Q ss_pred cCCCCCCHHHHHH-HhCCCCCCCCC------------------chHHHHHHHHHHHHHHH
Q 036883 140 FGDVRCNLKEAVE-LAGLIWQGRVH------------------CGLDDAINIARLLSVIM 180 (277)
Q Consensus 140 ~~~~~~~L~~l~~-~~gi~~~~~~H------------------~Al~DA~~ta~l~~~l~ 180 (277)
+...+++|+++++ .+|.....-.+ -.+.||..|..|+.+++
T Consensus 268 ~~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 268 INLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp SCCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7777899999997 58875332111 12678999988876654
No 25
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.07 E-value=7.9e-06 Score=81.93 Aligned_cols=138 Identities=16% Similarity=0.170 Sum_probs=87.0
Q ss_pred EEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHHHHH
Q 036883 4 YVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEALYFH 83 (277)
Q Consensus 4 ~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl~~f 83 (277)
+||||+||||+ ++..++|..|.++ +..++++. .+.|. .+++++..|
T Consensus 1 ~vv~D~ETtGl---~~~~d~i~~iqi~--~~~~~~~~-----~~~p~------------------------~i~~~l~~L 46 (698)
T 1x9m_A 1 MIVSDIEANAL---LESVTKFHCGVIY--DYSTAEYV-----SYRPS------------------------DFGAYLDAL 46 (698)
T ss_dssp CEEEEEEESSC---GGGCCCEEEEEEE--ETTTTEEE-----EECGG------------------------GHHHHHHHH
T ss_pred CEEEEcCCCCc---CCCCCEEEEEEEE--ecCCCcEE-----EEChH------------------------HHHHHHHHH
Confidence 58999999986 3566788766433 43334431 23332 124567788
Q ss_pred HHHHhhcCCCCCcEEEEEec-cchHHHHHHHHHHH---hCCCCCCCCcchhhhHHHHhHhcCC-CCCCHHHHHHHh----
Q 036883 84 DKWLLQMGLNNTNFSVVTWS-DWDCQVMLESECRI---KKIQKPAYFNQWINLRVPFSKVFGD-VRCNLKEAVELA---- 154 (277)
Q Consensus 84 ~~fl~~~~l~~~~~~vv~~~-~fDl~~~L~~~~~~---~gi~~p~~~~~~iDl~~~~~~~~~~-~~~~L~~l~~~~---- 154 (277)
.+|++ .. ...+.|++ .||+ .+|.+.+.+ .|+..++ ..++|+......+.+. .+++|+++++.|
T Consensus 47 ~~~l~-~~----~~kV~HNa~kfD~-~~L~~~~~~~~~~Gi~l~~--~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~s 118 (698)
T 1x9m_A 47 EAEVA-RG----GLIVFHNGHKYDV-PALTKLAKLQLNREFHLPR--ENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGA 118 (698)
T ss_dssp HHHHH-TT----CCEEESSTTTTHH-HHHHHHHHHHHCCCCCCCG--GGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSC
T ss_pred HHHHh-cC----CeEEEcCChHHHH-HHHHHhhhhcccCCccCCC--CcchhHHHHHHHhCCCCCCCCHHHHHHHHcccc
Confidence 88886 32 13567788 9997 799877544 2665441 3578988766555442 356776666554
Q ss_pred ----CC-------CC----------CC---C------------CCchHHHHHHHHHHHHHHHHhc
Q 036883 155 ----GL-------IW----------QG---R------------VHCGLDDAINIARLLSVIMRRG 183 (277)
Q Consensus 155 ----gi-------~~----------~~---~------------~H~Al~DA~~ta~l~~~l~~~g 183 (277)
|. ++ .+ . .|.|..||.+|+.|+..|..+-
T Consensus 119 L~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L 183 (698)
T 1x9m_A 119 LEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDK 183 (698)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 10 01 0 3668899999999999998753
No 26
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.0014 Score=67.61 Aligned_cols=156 Identities=16% Similarity=0.152 Sum_probs=100.3
Q ss_pred eEEEEEEccCCCCCCC--CCCCcEEEEceEEEECCCCEE---E-eEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCH
Q 036883 3 YYVVIDFEATCDKERN--LHPQEIIEFPSVVVSGVSGEI---I-ACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITL 76 (277)
Q Consensus 3 ~~vviDlETTg~~~~~--~~~~eIIEIgAV~vd~~~g~i---~-~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f 76 (277)
+++.||+||++..+.. +..++||.|+.++-. .|.. . ..|. +.+.. . +....|...++-
T Consensus 250 rilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~--~g~~~~~~r~~f~--l~~~~--~----------~~~~~V~~~~sE 313 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEYDPVIQIANVVSI--AGAKKPFIRNVFT--LNTCS--P----------ITGSMIFSHATE 313 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEE--TTCSSCSEEEEEE--ESCCC--C----------BTTBEEEEESSH
T ss_pred eEEEEEEEECCCCCCCCCCCCCcEEEEEEEEec--CCCcccceeEEEE--ecCCC--C----------CCCCeEEECCCH
Confidence 4678999999765433 467999999987653 3321 1 1121 22211 1 222356667789
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEe-c-cchHHHHHHHHHHHhCCCCCCCC----------------------------
Q 036883 77 GEALYFHDKWLLQMGLNNTNFSVVTW-S-DWDCQVMLESECRIKKIQKPAYF---------------------------- 126 (277)
Q Consensus 77 ~evl~~f~~fl~~~~l~~~~~~vv~~-~-~fDl~~~L~~~~~~~gi~~p~~~---------------------------- 126 (277)
.+.+.+|.+|+..... -+|++| + .||+ .+|..-+..+|++....+
T Consensus 314 ~eLL~~F~~~i~~~DP----DIIvGyNi~~FDl-pyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~ 388 (919)
T 3iay_A 314 EEMLSNWRNFIIKVDP----DVIIGYNTTNFDI-PYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNV 388 (919)
T ss_dssp HHHHHHHHHHHHHHCC----SEEEESSTTTTHH-HHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCB
T ss_pred HHHHHHHHHHHHHhCC----CEEEecCCccCCH-HHHHHHHHHcCCCchhhhccccCcccccccccccccccccccccee
Confidence 9999999999987531 245665 4 6997 799888888887632110
Q ss_pred ----cchhhhHHHHhHhcCCCCCCHHHHHHH-hCCCCCCCCC---------c----------hHHHHHHHHHHHHHH
Q 036883 127 ----NQWINLRVPFSKVFGDVRCNLKEAVEL-AGLIWQGRVH---------C----------GLDDAINIARLLSVI 179 (277)
Q Consensus 127 ----~~~iDl~~~~~~~~~~~~~~L~~l~~~-~gi~~~~~~H---------~----------Al~DA~~ta~l~~~l 179 (277)
.-.+|+..++++.+...+++|++++++ +|....+-.| . .+.||..+++|+.++
T Consensus 389 ~i~GR~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 389 NIDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp CCTTCEEEEHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEcCeEEEEhHHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 024588888887777789999999865 4543221111 1 157999999988776
No 27
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.58 E-value=0.00059 Score=69.75 Aligned_cols=155 Identities=21% Similarity=0.079 Sum_probs=94.4
Q ss_pred eEEEEEEcc-CCCCCCCCCC----CcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHH
Q 036883 3 YYVVIDFEA-TCDKERNLHP----QEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLG 77 (277)
Q Consensus 3 ~~vviDlET-Tg~~~~~~~~----~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~ 77 (277)
+++.||+|| |+..+..|.. ++||+||.+ + .+|.- -..++++.. .+..... |....+..-++..
T Consensus 191 ~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~-~~g~~---~~~~~~~~~---~~~~~~~---i~~~~v~~~~~E~ 258 (847)
T 1s5j_A 191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--G-SDGLK---KVLVLNRND---VNEGSVK---LDGISVERFNTEY 258 (847)
T ss_dssp CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--E-TTSCE---EEEEECSSC---CCCCCEE---ETTEEEEEESSHH
T ss_pred eEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--c-cCCCc---EEEEEeCCc---ccccccC---CCCCeEEEeCCHH
Confidence 578999999 7544444433 799999985 4 23421 123455542 1111111 2223355567899
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEe-c-cchHHHHHHHHHHHhCCCC---CC-C---------CcchhhhHHHHhHh---
Q 036883 78 EALYFHDKWLLQMGLNNTNFSVVTW-S-DWDCQVMLESECRIKKIQK---PA-Y---------FNQWINLRVPFSKV--- 139 (277)
Q Consensus 78 evl~~f~~fl~~~~l~~~~~~vv~~-~-~fDl~~~L~~~~~~~gi~~---p~-~---------~~~~iDl~~~~~~~--- 139 (277)
+.+.+|.+|+.+. + ++++| + .||+ .+|...+.++|+.. |. . ....+|+...+...
T Consensus 259 ~LL~~f~~~i~~~-----d-iivgyN~~~FDl-PyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~ 331 (847)
T 1s5j_A 259 ELLGRFFDILLEY-----P-IVLTFNGDDFDL-PYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVR 331 (847)
T ss_dssp HHHHHHHHHHTTC-----S-EEEESSTTTTHH-HHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHH
T ss_pred HHHHHHHHHhccC-----C-EEEEeCCCCchH-HHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhh
Confidence 9999999999764 3 57776 3 7998 79998888888863 21 0 12245776665421
Q ss_pred ---cC--CCCCCHHHHHH-HhCCCCCCC------CCc------hHHHHHHHHHHH
Q 036883 140 ---FG--DVRCNLKEAVE-LAGLIWQGR------VHC------GLDDAINIARLL 176 (277)
Q Consensus 140 ---~~--~~~~~L~~l~~-~~gi~~~~~------~H~------Al~DA~~ta~l~ 176 (277)
+. ..+++|+++++ .+|...... ... .+.||..|..|+
T Consensus 332 ~y~f~~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 332 NYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp HHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 22 25789999997 566542211 001 267999998884
No 28
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=97.50 E-value=0.0013 Score=63.47 Aligned_cols=83 Identities=13% Similarity=-0.035 Sum_probs=54.1
Q ss_pred cEEEEEeccchHHHHHHHHHHHhCCCCCC-----------CCcchhhhHHHHhH--hcC-CCCCCHHHHHHHhC-----C
Q 036883 96 NFSVVTWSDWDCQVMLESECRIKKIQKPA-----------YFNQWINLRVPFSK--VFG-DVRCNLKEAVELAG-----L 156 (277)
Q Consensus 96 ~~~vv~~~~fDl~~~L~~~~~~~gi~~p~-----------~~~~~iDl~~~~~~--~~~-~~~~~L~~l~~~~g-----i 156 (277)
+.+|.||+-.|+ .+|-+.|- + ++|. +|...+|++-+... +.+ ....+|.++.+.+. .
T Consensus 277 kpiVgHN~l~Dl-~~l~~~F~--~-pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~ 352 (507)
T 3d45_A 277 KLVVGHNMLLDV-MHTIHQFY--C-PLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDP 352 (507)
T ss_dssp CEEEESSCHHHH-HHHHHHHT--C-SCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCC
T ss_pred CeEEEechHHHH-HHHHHHhc--C-CCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCC
Confidence 445556677898 67776664 2 5553 23345677654322 111 12568999999986 2
Q ss_pred CC-------------CCCCCchHHHHHHHHHHHHHHHHh
Q 036883 157 IW-------------QGRVHCGLDDAINIARLLSVIMRR 182 (277)
Q Consensus 157 ~~-------------~~~~H~Al~DA~~ta~l~~~l~~~ 182 (277)
+. .+..|.|-.||+.|+.+|.+|...
T Consensus 353 p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~ 391 (507)
T 3d45_A 353 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 391 (507)
T ss_dssp CCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 21 345799999999999999999875
No 29
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.48 E-value=0.0029 Score=66.84 Aligned_cols=169 Identities=12% Similarity=0.021 Sum_probs=98.8
Q ss_pred eEEEEEEccCCCC---CCCC----CCCcEEEEceEEEECCCCEEEeEEEEee-cCCCCCCCChhhH--hHhCCChHHHhC
Q 036883 3 YYVVIDFEATCDK---ERNL----HPQEIIEFPSVVVSGVSGEIIACFQTYV-RPTFEPLLTDFCK--ELTGIQQHQVDN 72 (277)
Q Consensus 3 ~~vviDlETTg~~---~~~~----~~~eIIEIgAV~vd~~~g~i~~~f~~lV-rP~~~~~i~~~~~--~ltGIt~~~l~~ 72 (277)
+++.||+||++.. ...| ..++||.|+.++....+... ...+| .......+.++.. +-.++....|..
T Consensus 321 rvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~---~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~ 397 (1193)
T 2gv9_A 321 KLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTAL---EHVLLFSLGSCDLPESHLNELAARGLPTPVVLE 397 (1193)
T ss_dssp EEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCE---EEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEE
T ss_pred eEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCc---ceEEEEECCCcCCcchhhhhcccccCCCceEEe
Confidence 4788999998641 1122 24899999988765222211 11222 1111011222211 112222122555
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcEEEEEe-c-cchHHHHHHHH-HHHhCCCCCCCC-----------------------
Q 036883 73 GITLGEALYFHDKWLLQMGLNNTNFSVVTW-S-DWDCQVMLESE-CRIKKIQKPAYF----------------------- 126 (277)
Q Consensus 73 ap~f~evl~~f~~fl~~~~l~~~~~~vv~~-~-~fDl~~~L~~~-~~~~gi~~p~~~----------------------- 126 (277)
-.+-.+.+.+|.+|+..... -+|++| + .||+ .+|..- ...+|++++.+.
T Consensus 398 ~~sE~eLL~~F~~~I~~~DP----DIIvGyNi~~FDl-pyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~ 472 (1193)
T 2gv9_A 398 FDSEFEMLLAFMTLVKQYGP----EFVTGYNIINFDW-PFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSK 472 (1193)
T ss_dssp ESSHHHHHHHHHHHHHHHCC----SEEEESSTTTTHH-HHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------C
T ss_pred cCCHHHHHHHHHHHHHhcCC----CEEEEcCCcCccH-HHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccce
Confidence 67889999999999988632 256665 3 7998 566655 466777665321
Q ss_pred -----cchhhhHHHHhHhcCCCCCCHHHHHHH-hCCCCCCCCCc-------------------hHHHHHHHHHHHHHH
Q 036883 127 -----NQWINLRVPFSKVFGDVRCNLKEAVEL-AGLIWQGRVHC-------------------GLDDAINIARLLSVI 179 (277)
Q Consensus 127 -----~~~iDl~~~~~~~~~~~~~~L~~l~~~-~gi~~~~~~H~-------------------Al~DA~~ta~l~~~l 179 (277)
.-.+|+..+.++.+...+++|++++++ +|.....-.+. .+.||..+.+|+.++
T Consensus 473 ~~i~GRv~lDl~~~~~~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 473 IKVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp EEETTBEEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCeEeehHHHHHHHHhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 024577777767666678999999975 66543221111 256888999888776
No 30
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.37 E-value=0.0019 Score=60.14 Aligned_cols=164 Identities=10% Similarity=-0.010 Sum_probs=96.2
Q ss_pred eEEEEEEccCCCCCCCCC----CCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHh------HhCCC---hH-
Q 036883 3 YYVVIDFEATCDKERNLH----PQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKE------LTGIQ---QH- 68 (277)
Q Consensus 3 ~~vviDlETTg~~~~~~~----~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~------ltGIt---~~- 68 (277)
+++.||+||++ ++.|. .++||.|+.+.. .+++. ..| .++++.... ..++... +..++ ..
T Consensus 107 ~vlsfDIEt~~--~~fP~~~~~~d~Ii~Is~~~~--~~~~~-~~~-~l~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~ 179 (388)
T 1noy_A 107 RVANCDIEVTG--DKFPDPMKAEYEIDAITHYDS--IDDRF-YVF-DLLNSMYGS-VSKWDAKLAAKLDCEGGDEVPQEI 179 (388)
T ss_dssp CEEEEEEEECC--SSCCCTTTCCSCEEEEEEEET--TTTEE-EEE-EECCCSSCC-CCCCCHHHHHSCGGGTCCCCCHHH
T ss_pred EEEEEEEEeCC--CCCCCCCCCCCeEEEEEEEEe--cCCeE-EEE-EEeeccCCC-CCcccccccccccccccccccccc
Confidence 47889999998 22332 469999987633 34442 122 235432211 1111110 11111 11
Q ss_pred ----HHhCCCCHHHHHHHHHHHHhhcCCCCCcEEEEE-ec-cchHHHHHHHHHHH-hCCC-------CC---------CC
Q 036883 69 ----QVDNGITLGEALYFHDKWLLQMGLNNTNFSVVT-WS-DWDCQVMLESECRI-KKIQ-------KP---------AY 125 (277)
Q Consensus 69 ----~l~~ap~f~evl~~f~~fl~~~~l~~~~~~vv~-~~-~fDl~~~L~~~~~~-~gi~-------~p---------~~ 125 (277)
.+....+-.+.+.+|.+++..... -+|++ |+ .||+ .+|..-+.. +|+. +. .+
T Consensus 180 ~~~v~v~~~~~E~~LL~~f~~~i~~~dP----Dii~GyN~~~FDl-pyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~ 254 (388)
T 1noy_A 180 LDRVIYMPFDNERDMLMEYINLWEQKRP----AIFTGWNIEGFDV-PYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMY 254 (388)
T ss_dssp HTTEEEEEESCHHHHHHHHHHHHHHSCC----SEEECSSTTTTHH-HHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGG
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhCC----cEEEecCCCCccH-HHHHHHHHHHcCCccccccCcccccccccChhhh
Confidence 123566788999999999987521 24554 44 7998 677766665 5521 01 00
Q ss_pred Cc---------chhhhHHHHhHh-cC-CCCCCHHHHHH-HhCCCCCCCCCc----------------hHHHHHHHHHHHH
Q 036883 126 FN---------QWINLRVPFSKV-FG-DVRCNLKEAVE-LAGLIWQGRVHC----------------GLDDAINIARLLS 177 (277)
Q Consensus 126 ~~---------~~iDl~~~~~~~-~~-~~~~~L~~l~~-~~gi~~~~~~H~----------------Al~DA~~ta~l~~ 177 (277)
.. -.+|+..+++.. +. ..+++|+++++ .+|..... .+. .+.||..+.+|+.
T Consensus 255 g~~~~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d-~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~ 333 (388)
T 1noy_A 255 GSKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLP-YDGPINKLRETNHQRYISYNIIDVESVQAIDK 333 (388)
T ss_dssp CSCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCC-CSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCC-cHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 00 167888888873 65 67899999997 66664332 112 3789999999998
Q ss_pred HH
Q 036883 178 VI 179 (277)
Q Consensus 178 ~l 179 (277)
++
T Consensus 334 kl 335 (388)
T 1noy_A 334 IR 335 (388)
T ss_dssp HH
T ss_pred HH
Confidence 84
No 31
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=96.04 E-value=0.017 Score=56.02 Aligned_cols=117 Identities=9% Similarity=-0.004 Sum_probs=80.4
Q ss_pred EEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHHHHH
Q 036883 4 YVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEALYFH 83 (277)
Q Consensus 4 ~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl~~f 83 (277)
.+.||+|+.+. ++...+++-|+.. . .++. | +| + +++..|
T Consensus 12 ~valDtE~~~~---~~~~a~Lvgi~la--~--~~~a---~--~i--------~---------------------~~l~~l 50 (540)
T 4dfk_A 12 GAFVGFVLSRK---EPMWADLLALAAA--R--GGRV---H--RA--------P---------------------EPYKAL 50 (540)
T ss_dssp TCEEEEEESSS---CTTTCCEEEEEEE--E--TTEE---E--EC--------S---------------------SHHHHH
T ss_pred ceEEEEEecCC---ccCcccEEEEEEE--c--CCEE---E--Ee--------h---------------------hhHHHH
Confidence 38899999975 3567777666444 2 3332 2 11 0 356778
Q ss_pred HHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCCCCCCHHHHHHHhCCCCCCCCC
Q 036883 84 DKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAVELAGLIWQGRVH 163 (277)
Q Consensus 84 ~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~~~~~L~~l~~~~gi~~~~~~H 163 (277)
.+|+++.. .+.|+..||+ . ++|+..+ ..+|+......+.+. +++|++++++|...+ .|
T Consensus 51 ~~~l~d~~------kV~hn~K~Dl-~-------~~Gi~~~----~~fDT~laAyLL~p~-~~~L~~La~~yl~~~---gk 108 (540)
T 4dfk_A 51 RDLKEARG------LLAKDLSVLA-L-------REGLGLP----PGDDPMLLAYLLDPS-NTTPEGVARRYGGEW---TE 108 (540)
T ss_dssp TTCSSBCS------TTHHHHHHHH-H-------HTTCCCC----BCCCHHHHHHHHCTT-CCCHHHHHHHHTSCC---CS
T ss_pred HHHHcCCC------EEEeccHHHH-H-------HcCCCCC----cceeHHHHHHHhCCC-CCCHHHHHHHHhhhh---cc
Confidence 88887732 2456678886 2 5787643 467888766666666 899999998886442 36
Q ss_pred chHHHHHHHHHHHHHHHHhc
Q 036883 164 CGLDDAINIARLLSVIMRRG 183 (277)
Q Consensus 164 ~Al~DA~~ta~l~~~l~~~g 183 (277)
.|..||.+|++|+..|..+-
T Consensus 109 ~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 109 EAGERAALSERLFANLWGRL 128 (540)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 79999999999998886654
No 32
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=96.03 E-value=0.12 Score=53.07 Aligned_cols=164 Identities=9% Similarity=0.002 Sum_probs=95.2
Q ss_pred eEEEEEEccCCCCCCCC----CCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHh---------HhCCChHH
Q 036883 3 YYVVIDFEATCDKERNL----HPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKE---------LTGIQQHQ 69 (277)
Q Consensus 3 ~~vviDlETTg~~~~~~----~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~---------ltGIt~~~ 69 (277)
+.+.||+|++...+ .| ..++||.|+.+ |..+.+.. .|..+-.|.. ...++..+ -..+..+.
T Consensus 109 r~~~~DIEv~~~~~-fPd~~~~~~~Ii~It~~--d~~~~~~~-~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (903)
T 3qex_A 109 RVANFDIEVTSPDG-FPEPSQAKHPIDAITHY--DSIDDRFY-VFDLLNSPYG--NVEEWSIEIAAKLQEQGGDEVPSEI 182 (903)
T ss_dssp CEEEEEEECCCTTS-SCCTTTCCSCCCEEEEE--ETTTTEEE-EEEECEETTE--ECCCCCHHHHHSCGGGTCCCCCHHH
T ss_pred cEEEEeEEeCCCCC-CCCcccCCCCEEEEEEE--eCCCCEEE-EEEeeccccc--ccccccccccccccccccccccccc
Confidence 46889999987433 33 36899999777 65455432 2222222211 11111111 11233333
Q ss_pred Hh-----CCCCHHHHHHHHHHHHhhcCCCCCcEEEEEe-c-cchHHHHHHHHHHH-hCCCC----CCC------------
Q 036883 70 VD-----NGITLGEALYFHDKWLLQMGLNNTNFSVVTW-S-DWDCQVMLESECRI-KKIQK----PAY------------ 125 (277)
Q Consensus 70 l~-----~ap~f~evl~~f~~fl~~~~l~~~~~~vv~~-~-~fDl~~~L~~~~~~-~gi~~----p~~------------ 125 (277)
+. .-++-.+.+.+|.+|+..... -+|++| + .||+ .+|..-+.. +|++. ..+
T Consensus 183 ~~~v~v~~f~sE~eLL~~F~~~I~~~DP----DIItGyN~~~FDl-PYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~ 257 (903)
T 3qex_A 183 IDKIIYMPFDNEKELLMEYLNFWQQKTP----VILTGWNVESFAI-PYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMY 257 (903)
T ss_dssp HTTEEEEEESSHHHHHHHHHHHHHHTCC----SEEECSSTTTTHH-HHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhCC----CEEEecCCccCCH-HHHHHHHHHHcCCcccccccccccccccchhhhc
Confidence 33 246788999999999987531 245545 3 7997 688776665 56521 111
Q ss_pred ---------CcchhhhHHHHhHh--cCCCCCCHHHHHHHh-CCCCCCCCCc----------------hHHHHHHHHHHHH
Q 036883 126 ---------FNQWINLRVPFSKV--FGDVRCNLKEAVELA-GLIWQGRVHC----------------GLDDAINIARLLS 177 (277)
Q Consensus 126 ---------~~~~iDl~~~~~~~--~~~~~~~L~~l~~~~-gi~~~~~~H~----------------Al~DA~~ta~l~~ 177 (277)
..-.+|+..+++.. .+..+++|+++++++ |.... ..|. .+.||..+.+|+.
T Consensus 258 G~~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~-d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~ 336 (903)
T 3qex_A 258 GSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKL-KYDGPISKLRESNHQRYISYNIIAVYRVLQIDA 336 (903)
T ss_dssp EEEEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCC-CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCcc-ccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 01156877777763 245689999998765 43322 1121 1579999999987
Q ss_pred H
Q 036883 178 V 178 (277)
Q Consensus 178 ~ 178 (277)
+
T Consensus 337 K 337 (903)
T 3qex_A 337 K 337 (903)
T ss_dssp H
T ss_pred H
Confidence 7
No 33
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.16 E-value=0.5 Score=47.80 Aligned_cols=147 Identities=12% Similarity=0.139 Sum_probs=89.7
Q ss_pred eEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHHHH
Q 036883 3 YYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEALYF 82 (277)
Q Consensus 3 ~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl~~ 82 (277)
+.+.||+|+.+ ..+|+.||.. + .+. +..-++=.+.. . - .+....|..-++-.+.+.+
T Consensus 154 rilsfDIE~~~-------~g~i~~I~~~--~--~~~--~~v~~l~~~~~-~-~--------~~~~~~V~~f~~E~~lL~~ 210 (786)
T 3k59_A 154 KWVSIDIETTR-------HGELYCIGLE--G--CGQ--RIVYMLGPENG-D-A--------SSLDFELEYVASRPQLLEK 210 (786)
T ss_dssp CEEEEEEEECT-------TSCEEEEEEE--E--TTE--EEEEEESSCCS-C-C--------TTCSSEEEEESSHHHHHHH
T ss_pred eEEEEEEEEcC-------CCCEEEEEec--C--CCC--CeEEEEecCCC-C-C--------CCCCceEEEeCCHHHHHHH
Confidence 57899999994 2379999743 3 221 11112212221 0 0 1112234445678899999
Q ss_pred HHHHHhhcCCCCCcEEEEEe-c-cchHHHHHHHHHHHhCCCCC--------CC----C-----------cchhhhHHHHh
Q 036883 83 HDKWLLQMGLNNTNFSVVTW-S-DWDCQVMLESECRIKKIQKP--------AY----F-----------NQWINLRVPFS 137 (277)
Q Consensus 83 f~~fl~~~~l~~~~~~vv~~-~-~fDl~~~L~~~~~~~gi~~p--------~~----~-----------~~~iDl~~~~~ 137 (277)
|.+|+..... -++++| + .||+ .+|..-+..+|++.. .+ + .-.+|+..+.+
T Consensus 211 f~~~i~~~dP----Dii~g~N~~~FD~-pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk 285 (786)
T 3k59_A 211 LNAWFANYDP----DVIIGWNVVQFDL-RMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALK 285 (786)
T ss_dssp HHHHHHHHCC----SEEEESSTTTTHH-HHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHH
T ss_pred HHHHHHHcCC----CEEEecCCccCcH-HHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHH
Confidence 9999988632 256665 3 6998 788888888887631 00 0 11457766666
Q ss_pred H-hcCCCCCCHHHHHHHh-CCCCCCCCCc----------------------hHHHHHHHHHHHHHH
Q 036883 138 K-VFGDVRCNLKEAVELA-GLIWQGRVHC----------------------GLDDAINIARLLSVI 179 (277)
Q Consensus 138 ~-~~~~~~~~L~~l~~~~-gi~~~~~~H~----------------------Al~DA~~ta~l~~~l 179 (277)
. .+...+++|+++++++ |.... .|. .+.||..+.+|+.++
T Consensus 286 ~~~~~l~SysL~~Va~~~Lg~~K~--~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 286 SAFWNFSSFSLETVAQELLGEGKS--IDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HTTCCCSCCSHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCCCCHHHHHHHHhCCCCc--ccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 4566789999999874 43321 122 157999999998874
No 34
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=92.72 E-value=0.53 Score=44.23 Aligned_cols=83 Identities=13% Similarity=0.001 Sum_probs=53.2
Q ss_pred cEEEEEeccchHHHHHHHHHHHhCCCCCC-----------CCcchhhhHHHHhHh-cC--CCCCCHHHHHHHhCCC----
Q 036883 96 NFSVVTWSDWDCQVMLESECRIKKIQKPA-----------YFNQWINLRVPFSKV-FG--DVRCNLKEAVELAGLI---- 157 (277)
Q Consensus 96 ~~~vv~~~~fDl~~~L~~~~~~~gi~~p~-----------~~~~~iDl~~~~~~~-~~--~~~~~L~~l~~~~gi~---- 157 (277)
+.+|.||.-.|+ .++-..| .| ++|. +|...+|++.+.... ++ ....+|.++.+.+.-.
T Consensus 282 KpiVGHN~llDl-~~l~~~F--~~-pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~ 357 (430)
T 2a1r_A 282 KLVIGHNMLLDV-MHTVHQF--YC-PLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNP 357 (430)
T ss_dssp CEEEESSCHHHH-HHHHHHH--TC-CCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCC
T ss_pred CceEechhHHHH-HHHHHHh--cc-CCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCC
Confidence 456667777898 5666544 23 4553 234566776554321 11 1246899998876421
Q ss_pred --------------CCCCCCchHHHHHHHHHHHHHHHHh
Q 036883 158 --------------WQGRVHCGLDDAINIARLLSVIMRR 182 (277)
Q Consensus 158 --------------~~~~~H~Al~DA~~ta~l~~~l~~~ 182 (277)
..+..|.|-.||++|+.+|.+|...
T Consensus 358 p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~ 396 (430)
T 2a1r_A 358 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 396 (430)
T ss_dssp CCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred CeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHH
Confidence 1245699999999999999999875
No 35
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=91.67 E-value=2.3 Score=39.89 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=55.3
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCCCCCCHHHHHH-HhCCCCC
Q 036883 81 YFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAVE-LAGLIWQ 159 (277)
Q Consensus 81 ~~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~~~~~L~~l~~-~~gi~~~ 159 (277)
..|..+|.+..+ .-|.|+..+|+ ..|. +.+|+... ..+|++... .+.+...++|++|++ ++|+...
T Consensus 172 ~~L~~lL~dp~i----~KV~H~~k~Dl-~~L~---~~~Gi~~~----~~fDT~lAa-~lL~~~~~gL~~Lv~~~Lg~~l~ 238 (428)
T 3saf_A 172 YILNESLTDPAI----VKVFHGADSDI-EWLQ---KDFGLYVV----NMFDTHQAA-RLLNLGRHSLDHLLKLYCNVDSN 238 (428)
T ss_dssp GGGHHHHTCTTS----EEEESSCHHHH-HHHH---HHHCCCCS----SEEEHHHHH-HHTTCSCCSHHHHHHHHHCCCCC
T ss_pred HHHHHHHcCCCc----eEEEeehHHHH-HHHH---HHcCCCcC----ceeechhHH-HHhCCCCCCHHHHHHHHcCCCCC
Confidence 456667776532 23555678997 4664 35677642 367877543 344544689999885 4676542
Q ss_pred CCC---------------CchHHHHHHHHHHHHHHHHh
Q 036883 160 GRV---------------HCGLDDAINIARLLSVIMRR 182 (277)
Q Consensus 160 ~~~---------------H~Al~DA~~ta~l~~~l~~~ 182 (277)
... +-|..||..+..|+..|..+
T Consensus 239 K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~ 276 (428)
T 3saf_A 239 KQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE 276 (428)
T ss_dssp CTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 22568999999998887653
No 36
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=87.35 E-value=0.96 Score=38.08 Aligned_cols=89 Identities=11% Similarity=-0.033 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEe-ccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCC---CCCCHHHHHH-Hh
Q 036883 80 LYFHDKWLLQMGLNNTNFSVVTW-SDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGD---VRCNLKEAVE-LA 154 (277)
Q Consensus 80 l~~f~~fl~~~~l~~~~~~vv~~-~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~---~~~~L~~l~~-~~ 154 (277)
+..|.++|.+.. ++.|.+ ...|+ ..|.+ .+|+.. ...+|++.++....|. .+.+|+.|++ .+
T Consensus 97 L~~L~~lL~d~~-----i~Kvg~~~~~D~-~~L~~---~~g~~~----~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~l 163 (206)
T 1vk0_A 97 LKDLYRFFASKF-----VTFVGVQIEEDL-DLLRE---NHGLVI----RNAINVGKLAAEARGTLVLEFLGTRELAHRVL 163 (206)
T ss_dssp GHHHHHHHTCSS-----SEEEESSCHHHH-HHHHH---HHCCCC----SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHH
T ss_pred HHHHHHHhcCCC-----ceEEEeccHHHH-HHHHH---hcCCCc----CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHh
Confidence 344777887753 355554 58898 46643 457653 4588998887666663 4689999885 57
Q ss_pred CCCC-CC--------------CCCchHHHHHHHHHHHHHHHH
Q 036883 155 GLIW-QG--------------RVHCGLDDAINIARLLSVIMR 181 (277)
Q Consensus 155 gi~~-~~--------------~~H~Al~DA~~ta~l~~~l~~ 181 (277)
|++. .. +-+=|..||+.+..|+.+|.+
T Consensus 164 g~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 164 WSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp CCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7765 10 113378999999999999875
No 37
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=84.19 E-value=5.2 Score=36.39 Aligned_cols=89 Identities=10% Similarity=0.029 Sum_probs=56.5
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCC-CCCCHHHHHHHh-CCCC
Q 036883 81 YFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGD-VRCNLKEAVELA-GLIW 158 (277)
Q Consensus 81 ~~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~-~~~~L~~l~~~~-gi~~ 158 (277)
..|.+++.+..+ .-+.|+..+|+ ..|.+ .+|+... ..+|++..... .+. .+++|+++++.+ |+..
T Consensus 64 ~~L~~ll~d~~i----~Kv~h~~k~Dl-~~L~~---~~Gi~~~----~~fDt~lAa~l-L~~~~~~~L~~L~~~~l~~~l 130 (375)
T 1yt3_A 64 SPLKAILRDPSI----TKFLHAGSEDL-EVFLN---VFGELPQ----PLIDTQILAAF-CGRPMSWGFASMVEEYSGVTL 130 (375)
T ss_dssp HHHHHHHHCTTS----EEEESSCHHHH-HHHHH---HHSSCCS----SEEEHHHHHHH-TTCCTTCCHHHHHHHHHCCCC
T ss_pred HHHHHHHcCCCc----eEEEeeHHHHH-HHHHH---HcCCCCC----cEEEcHHHHHH-cCCCCChhHHHHHHHHcCCCC
Confidence 457778877532 23556678897 56653 3577542 46788755433 343 378999999876 7653
Q ss_pred CCC---------C------CchHHHHHHHHHHHHHHHHh
Q 036883 159 QGR---------V------HCGLDDAINIARLLSVIMRR 182 (277)
Q Consensus 159 ~~~---------~------H~Al~DA~~ta~l~~~l~~~ 182 (277)
... . +-|..||..+..|+..|.++
T Consensus 131 ~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~ 169 (375)
T 1yt3_A 131 DKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE 169 (375)
T ss_dssp CCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1 11567999999998888754
No 38
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=82.05 E-value=1 Score=44.05 Aligned_cols=130 Identities=15% Similarity=0.030 Sum_probs=78.5
Q ss_pred eEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHHHH
Q 036883 3 YYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEALYF 82 (277)
Q Consensus 3 ~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl~~ 82 (277)
.-..||+|+++. ++...+++-|+.. . ..+ ..|| |. . + .+++..
T Consensus 30 ~~~aldtE~~~~---~~~~a~Lvgisla--~--~~~-----a~yI-p~-----~------~-------------~~~l~~ 72 (592)
T 3pv8_A 30 DKAALVVEVVEE---NYHDAPIVGIAVV--N--EHG-----RFFL-RP-----E------T-------------ALADPQ 72 (592)
T ss_dssp SEEEEEEECCSS---SCTTCCCCEEEEE--E--TTE-----EEEE-CH-----H------H-------------HTTCHH
T ss_pred cCcEEEEEEcCC---ccCcccEEEEEEE--c--CCc-----eEEE-cc-----c------h-------------hhHHHH
Confidence 446899999975 4567777665433 2 222 1344 21 0 0 234567
Q ss_pred HHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCC-CCCCHHHHHHHh-CCCCC-
Q 036883 83 HDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGD-VRCNLKEAVELA-GLIWQ- 159 (277)
Q Consensus 83 f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~-~~~~L~~l~~~~-gi~~~- 159 (277)
|..||++... ..++|+..+|+ .+|. ++|+..+ ...+|++-....+-+. .+++|+++++.| |....
T Consensus 73 Lk~lLed~~i----~KV~hn~K~Dl-~vL~----~~Gi~l~---g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~ 140 (592)
T 3pv8_A 73 FVAWLGDETK----KKSMFDSKRAA-VALK----WKGIELC---GVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRP 140 (592)
T ss_dssp HHHHHTCTTS----EEEESSHHHHH-HHHH----HTTCCCC---CEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCC
T ss_pred HHHHHhCCCC----eEEEechHHHH-HHHH----HcCCCCC---CccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCch
Confidence 8889987532 34566788997 5664 5788764 3467877554444333 468999999765 44321
Q ss_pred -------C----------CCCchHHHHHHHHHHHHHHHH
Q 036883 160 -------G----------RVHCGLDDAINIARLLSVIMR 181 (277)
Q Consensus 160 -------~----------~~H~Al~DA~~ta~l~~~l~~ 181 (277)
+ ..+-|..||..+.+|+..|..
T Consensus 141 ~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~ 179 (592)
T 3pv8_A 141 DEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLD 179 (592)
T ss_dssp HHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012356789999888876654
No 39
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=76.33 E-value=7.4 Score=31.94 Aligned_cols=91 Identities=12% Similarity=-0.052 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcC-CCCCCHHHHHHHh-CCCC
Q 036883 81 YFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFG-DVRCNLKEAVELA-GLIW 158 (277)
Q Consensus 81 ~~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~-~~~~~L~~l~~~~-gi~~ 158 (277)
..|.+++++..+ .-+.++...|+ ..|. +.+|+... + .+|+..+...+.+ ..+++|+++++.+ |...
T Consensus 86 ~~L~~lL~d~~i----~Kv~~~~k~D~-~~L~---~~~gi~~~---~-~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~ 153 (208)
T 2e6m_A 86 QGLKMLLENKSI----KKAGVGIEGDQ-WKLL---RDFDVKLE---S-FVELTDVANEKLKCAETWSLNGLVKHVLGKQL 153 (208)
T ss_dssp HHHHHHHTCTTS----EEEESSHHHHH-HHHH---HHHCCCCC---S-EEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBC
T ss_pred HHHHHHhcCCCc----eEEEEeeHHHH-HHHH---HHCCCCCC---C-EEEHHHHHHHHccCCCChhHHHHHHHHcCCCc
Confidence 356777877432 22444557786 4554 23677643 3 7786556555544 3578999999876 6543
Q ss_pred C-----------CCC------CchHHHHHHHHHHHHHHHHhc
Q 036883 159 Q-----------GRV------HCGLDDAINIARLLSVIMRRG 183 (277)
Q Consensus 159 ~-----------~~~------H~Al~DA~~ta~l~~~l~~~g 183 (277)
. .+. +-|-.||.++..|+..|.++-
T Consensus 154 ~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L 195 (208)
T 2e6m_A 154 LKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLG 195 (208)
T ss_dssp CCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 111 125689999999999887654
No 40
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=74.94 E-value=3.6 Score=39.92 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=76.2
Q ss_pred CeEEEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHHH
Q 036883 2 EYYVVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEALY 81 (277)
Q Consensus 2 ~~~vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl~ 81 (277)
+.++++|+||+. ++..+.++-+|.. +. + ....|... .. +.
T Consensus 6 ~~i~~~D~Et~~----d~~~~~~~~i~~~--~~--~-~~~~~~~~---------------------------~~----l~ 45 (575)
T 2py5_A 6 RKMYSCAFETTT----KVEDCRVWAYGYM--NI--E-DHSEYKIG---------------------------NS----LD 45 (575)
T ss_dssp CCEEEEEEEECC----BTTBCCEEEEEEE--ES--S-CTTCEEEE---------------------------SC----HH
T ss_pred ceEEEEEEEeec----CCCCCceEEEEEE--eC--C-ceEEEEec---------------------------hh----HH
Confidence 468899999985 3455678888763 42 1 11122110 01 46
Q ss_pred HHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCC-----CCCC-------Ccc----------------hhhhH
Q 036883 82 FHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQ-----KPAY-------FNQ----------------WINLR 133 (277)
Q Consensus 82 ~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~-----~p~~-------~~~----------------~iDl~ 133 (277)
+|.+|+.... ..+++||..||+ .+|.+.+...|+. .|.. ... -++++
T Consensus 46 ~fi~~~~~~~----~~i~~hNl~FD~-~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~ 120 (575)
T 2py5_A 46 EFMAWVLKVQ----ADLYFHNLKFAG-AFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIY 120 (575)
T ss_dssp HHHHHHHHHC----CEEEETTHHHHH-HHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHcC----CEEEEEChhhhH-HHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEE
Confidence 6777887642 235556778997 6888888887521 1111 000 12222
Q ss_pred HHHhHhcCCCCCCHHHHHHHhCCCCCC--CCC----------c------hHHHHHHHHHHHHHHHHh
Q 036883 134 VPFSKVFGDVRCNLKEAVELAGLIWQG--RVH----------C------GLDDAINIARLLSVIMRR 182 (277)
Q Consensus 134 ~~~~~~~~~~~~~L~~l~~~~gi~~~~--~~H----------~------Al~DA~~ta~l~~~l~~~ 182 (277)
..++.+ +.||+.+++.|+++... -.| . .+.|++.+++++...+..
T Consensus 121 Ds~~~~----~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f~~ 183 (575)
T 2py5_A 121 DSLKKL----PFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFKQ 183 (575)
T ss_dssp EHHHHS----CSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EhHhhh----hhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222221 46999999999986210 001 1 278999999998876543
No 41
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=72.86 E-value=14 Score=34.20 Aligned_cols=89 Identities=10% Similarity=0.006 Sum_probs=56.0
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCCCCCCHHHHHHHh-CCCCC
Q 036883 81 YFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAVELA-GLIWQ 159 (277)
Q Consensus 81 ~~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~~~~~L~~l~~~~-gi~~~ 159 (277)
..|.+++.+..+ .-|.|+..+|+ ..|.+ .+|+... ..+|++.... +.+..+++|+++++.+ |....
T Consensus 149 ~~L~~lL~d~~i----~KV~h~~k~Dl-~~L~~---~~Gi~~~----~~fDt~lAa~-LL~~~~~~L~~L~~~~lg~~l~ 215 (410)
T 2hbj_A 149 HILNEVFTNPSI----VKVFHGAFMDI-IWLQR---DLGLYVV----GLFDTYHASK-AIGLPRHSLAYLLENFANFKTS 215 (410)
T ss_dssp GGGHHHHTCTTS----EEEESSCHHHH-HHHHH---HHCCCCS----SEEEHHHHHH-HHTCSCCSHHHHHHHHSCCCCC
T ss_pred HHHHHHHcCCCc----eEEEEehHHHH-HHHHH---HcCCCcC----CEEEcHHHHH-HhCCCccCHHHHHHHHcCCCCC
Confidence 456677776432 23455678897 56652 3577643 2778875443 4454468999999877 65432
Q ss_pred C---------CC------CchHHHHHHHHHHHHHHHHh
Q 036883 160 G---------RV------HCGLDDAINIARLLSVIMRR 182 (277)
Q Consensus 160 ~---------~~------H~Al~DA~~ta~l~~~l~~~ 182 (277)
. +. +-|..||..+..|+..|.++
T Consensus 216 K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~ 253 (410)
T 2hbj_A 216 KKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNK 253 (410)
T ss_dssp CTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 11568999999998888764
No 42
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=66.89 E-value=21 Score=33.27 Aligned_cols=87 Identities=13% Similarity=0.022 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeccchHHHHHHHHHHHhCCCCCCCCcchhhhHHHHhHhcCCCCCCHHHHHHHh-CCCC
Q 036883 80 LYFHDKWLLQMGLNNTNFSVVTWSDWDCQVMLESECRIKKIQKPAYFNQWINLRVPFSKVFGDVRCNLKEAVELA-GLIW 158 (277)
Q Consensus 80 l~~f~~fl~~~~l~~~~~~vv~~~~fDl~~~L~~~~~~~gi~~p~~~~~~iDl~~~~~~~~~~~~~~L~~l~~~~-gi~~ 158 (277)
+..|.+++.+. ..|.|+...|+ ..|. ..|+..+ ..+|+. +...+++..+++|+.+++.+ |...
T Consensus 84 l~~L~~lL~d~------~KV~h~~k~Dl-~~L~----~~gi~~~----~~fDt~-lAa~lL~~~~~gL~~L~~~~lg~~~ 147 (440)
T 3cym_A 84 WNDFNRAVGDA------VWILHDSLQDL-PGFD----ELGMEPQ----RLFDTE-IAARLLGLKRFGLAAVTEHFLGLTL 147 (440)
T ss_dssp HHHHHHHHTTC------EEEESSHHHHH-HHHH----HHTCCCC----EEEEHH-HHHHHTTCSSCSHHHHHHHHHCEEC
T ss_pred HHHHHHHHCCC------CEEEEcCHHHH-HHHH----HcCCcCC----ceehHH-HHHHHhCCCCCCHHHHHHHHhCCCc
Confidence 44577777763 23556667886 4663 5677543 467874 44445554478999999887 5432
Q ss_pred C---------CCC------CchHHHHHHHHHHHHHHHHh
Q 036883 159 Q---------GRV------HCGLDDAINIARLLSVIMRR 182 (277)
Q Consensus 159 ~---------~~~------H~Al~DA~~ta~l~~~l~~~ 182 (277)
. .+. .-|..||..+..|+..|.++
T Consensus 148 ~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 148 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAE 186 (440)
T ss_dssp CCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 12678999999988887653
No 43
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=51.10 E-value=25 Score=29.63 Aligned_cols=86 Identities=19% Similarity=0.118 Sum_probs=55.0
Q ss_pred EEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHHHHHHH
Q 036883 6 VIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEALYFHDK 85 (277)
Q Consensus 6 viDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl~~f~~ 85 (277)
=||+|.. +..-+||+. +-+.+|+-+ +.|=+|......-..+.--|||...||.++.| -.+..++.
T Consensus 61 WiDIEG~--------p~DPVElAi--yQP~sg~YI---HcyR~P~D~K~FK~~SKySHGillkDl~~aqP--GL~S~vi~ 125 (243)
T 3q7c_A 61 WMDIEGR--------PEDPVEIAL--YQPSSGCYI---HFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAVID 125 (243)
T ss_dssp EEEEESC--------TTSCSEEEE--EETTTTEEE---EEECCCSCHHHHHHHHHHTTCBCGGGGTTBCT--THHHHHHH
T ss_pred EEecCCC--------CCCCeEEEE--eccCCCcEE---EEecCCcchhhhcccCccccceehhhhhhcCC--chHHHHHH
Confidence 4788877 234478854 467799886 45667864222334455569999999998876 44555555
Q ss_pred HHhhcCCCCCcEEEEEeccchHHHHHH
Q 036883 86 WLLQMGLNNTNFSVVTWSDWDCQVMLE 112 (277)
Q Consensus 86 fl~~~~l~~~~~~vv~~~~fDl~~~L~ 112 (277)
.|-.+ .++-+-|+-|++..|.
T Consensus 126 ~LP~n------MVlT~QGsDDIrkLld 146 (243)
T 3q7c_A 126 ALPRN------MVITCQGSDDIRKLLE 146 (243)
T ss_dssp HSCTT------CEEEESSHHHHHHHHH
T ss_pred hCCcC------cEEEeeChHHHHHHHH
Confidence 55443 3444568888865554
No 44
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=49.02 E-value=4.3 Score=39.96 Aligned_cols=23 Identities=0% Similarity=-0.256 Sum_probs=9.8
Q ss_pred CCCCcceeCCCCCCCCCCCCCceeeccC
Q 036883 249 KRGSFFFGCGNWTPNRGACCNYFQWATT 276 (277)
Q Consensus 249 ~~g~~f~~c~~~~~~~~~~c~~f~w~~~ 276 (277)
..|+.||+|.+|+ .|.|-.|..+
T Consensus 589 k~G~~f~gCs~yp-----~C~f~~~~~p 611 (633)
T 2gai_A 589 DEIAVIDDGKIFL-----GRKDSESGSP 611 (633)
T ss_dssp TSBCEEETTEEEC---------------
T ss_pred cCCCeEEeCCCCc-----CCCCeecCCc
Confidence 4688899997652 3999999753
No 45
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=44.66 E-value=8.6 Score=23.52 Aligned_cols=34 Identities=29% Similarity=0.759 Sum_probs=22.7
Q ss_pred eeeeecCCccccceeccCCCCCCCcceeCCCCCCCCCCCCCcee
Q 036883 229 CRYCYCGAKSIKKVIQRPGPKRGSFFFGCGNWTPNRGACCNYFQ 272 (277)
Q Consensus 229 ~~~c~c~~~~~~~~~~~~g~~~g~~f~~c~~~~~~~~~~c~~f~ 272 (277)
.++|.=|.. ..||| ||.-||.= .| ++++.|+||+
T Consensus 4 ~P~Cd~Geq---CAvRk-G~RigklC-~C-----~rg~~Cn~fl 37 (41)
T 1hy9_A 4 VPMCDAGEQ---CAVRK-GARIGKLC-DC-----PRGTSCNSFL 37 (41)
T ss_dssp CCBCCSSSC---SEEEC-SSSEEECC-BC-----CTTCCBCTTT
T ss_pred CCcCCccch---hhhhc-ccccchhc-CC-----CCCCcchhhh
Confidence 355655543 45545 88888753 55 5899999996
No 46
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=34.95 E-value=64 Score=29.86 Aligned_cols=48 Identities=19% Similarity=0.107 Sum_probs=33.4
Q ss_pred eEEEEEEccCCCCCCC----------------------CCCCcEEEEceEEEECCC---CEEEeEEEEeecCC
Q 036883 3 YYVVIDFEATCDKERN----------------------LHPQEIIEFPSVVVSGVS---GEIIACFQTYVRPT 50 (277)
Q Consensus 3 ~~vviDlETTg~~~~~----------------------~~~~eIIEIgAV~vd~~~---g~i~~~f~~lVrP~ 50 (277)
.||.+|+|.||+.... ...-.|||+|....+..+ .-....|+.++=|.
T Consensus 23 ~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP~ 95 (430)
T 2a1r_A 23 DFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK 95 (430)
T ss_dssp SEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCC
T ss_pred CEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEeccc
Confidence 5899999999984211 112469999999997432 12468899888664
No 47
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=32.08 E-value=18 Score=27.72 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=29.3
Q ss_pred EEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCC
Q 036883 25 IEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGIT 75 (277)
Q Consensus 25 IEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~ 75 (277)
|.+|++.+| ++|+|. ..+.+..+++|++.+++.+..-
T Consensus 26 l~~Gii~lD-~~g~I~-------------~~N~~~e~~sG~~~~eviGk~~ 62 (125)
T 1nwz_A 26 LAFGAIQLD-GDGNIL-------------QYNAAEGDITGRDPKQVIGKNF 62 (125)
T ss_dssp CSSEEEEEE-TTCBEE-------------EECHHHHHHHCCCHHHHTTSBC
T ss_pred cCceEEEEC-CCCEEE-------------EEHHHHHHHhCCCHHHHcCCch
Confidence 568999999 688885 2677889999999998765443
No 48
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=32.08 E-value=63 Score=30.28 Aligned_cols=87 Identities=18% Similarity=0.117 Sum_probs=55.0
Q ss_pred EEEEEccCCCCCCCCCCCcEEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCCHHHHHHHHH
Q 036883 5 VVIDFEATCDKERNLHPQEIIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGITLGEALYFHD 84 (277)
Q Consensus 5 vviDlETTg~~~~~~~~~eIIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~f~evl~~f~ 84 (277)
.-||+|.. +..-+||+. +-+.+|+.+ +.|=+|......-..+.--|||...||.++.| -.+..+.
T Consensus 394 tWiDIEG~--------p~DPVE~Ai--yQP~~g~Yi---HcyR~P~D~K~FK~~SkysHGillkDl~~aqP--GL~S~vi 458 (577)
T 3mwp_A 394 TWMDIEGR--------PEDPVEIAL--YQPSSGCYI---HFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAVI 458 (577)
T ss_dssp EEEEEESC--------TTSCSEEEE--EETTTTEEE---EEECCCSCHHHHHHHHHHTTCBCGGGGGGBCT--THHHHHH
T ss_pred eEEecCCC--------CCCCeEEEE--eccCCCcEE---EEecCCcchhhhcccCccccceehhhhhhcCC--chHHHHH
Confidence 45788877 234478854 467788886 56667865222334455569999999998776 3444455
Q ss_pred HHHhhcCCCCCcEEEEEeccchHHHHHH
Q 036883 85 KWLLQMGLNNTNFSVVTWSDWDCQVMLE 112 (277)
Q Consensus 85 ~fl~~~~l~~~~~~vv~~~~fDl~~~L~ 112 (277)
..|-.+ .++-+-|+-|++..|.
T Consensus 459 ~~LP~~------mV~T~QGsdDI~kLld 480 (577)
T 3mwp_A 459 DALPRN------MVITCQGSDDIRKLLE 480 (577)
T ss_dssp HHSCTT------CEEEESSHHHHHHHHH
T ss_pred HhCCcC------cEEEeeChHHHHHHHH
Confidence 555443 3444568888865554
No 49
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=31.59 E-value=19 Score=27.87 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=29.7
Q ss_pred EEEEceEEEECCCCEEEeEEEEeecCCCCCCCChhhHhHhCCChHHHhCCCC
Q 036883 24 IIEFPSVVVSGVSGEIIACFQTYVRPTFEPLLTDFCKELTGIQQHQVDNGIT 75 (277)
Q Consensus 24 IIEIgAV~vd~~~g~i~~~f~~lVrP~~~~~i~~~~~~ltGIt~~~l~~ap~ 75 (277)
-|.+|++++| ++|+|+ ..+.+..+++|++.+++.+..-
T Consensus 30 ~l~~GiivlD-~dg~I~-------------~~N~~~e~isG~s~eeviGk~~ 67 (129)
T 1mzu_A 30 ALPVGAIQVD-GSGVIH-------------RYNRTESRLSGRIPERVIGRNF 67 (129)
T ss_dssp GCSSEEEEEE-TTCBEE-------------EECHHHHHHHCCCHHHHTTSBC
T ss_pred ccCceEEEEC-CCCeEE-------------EEHHHHHHHhCCCHHHHcCCch
Confidence 3568999999 688885 2677889999999999765443
No 50
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=21.95 E-value=1.6e+02 Score=20.83 Aligned_cols=55 Identities=13% Similarity=0.049 Sum_probs=31.4
Q ss_pred hhhHhHhCCChHHHhCCCCHHHHHHHHHHHHhhcCC-----CCCcEEEEEe--ccc------hHHHHHHHHHHHhCC
Q 036883 57 DFCKELTGIQQHQVDNGITLGEALYFHDKWLLQMGL-----NNTNFSVVTW--SDW------DCQVMLESECRIKKI 120 (277)
Q Consensus 57 ~~~~~ltGIt~~~l~~ap~f~evl~~f~~fl~~~~l-----~~~~~~vv~~--~~f------Dl~~~L~~~~~~~gi 120 (277)
+...+|||.+ .+||+..+.+||..... .+...+.|.+ |.. =|+..+...++..++
T Consensus 8 ~~~lDLHGl~---------v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~ 75 (96)
T 2d9i_A 8 QNVLDLHGLH---------VDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHSF 75 (96)
T ss_dssp CCEEECTTSC---------HHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCTTCHHHHHHHHHHHTTC
T ss_pred CCeEECCCCC---------HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCCCCcchHHHHHHHHHhhCCC
Confidence 3445788887 57888888888875421 2333333333 321 255566666666544
Done!