BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036886
MYIVLKKVDLQVHSSRKYFGLFNFIYSLSCYIIRKQKDPSKAHQTKLDVIVKALKWLEMD
MDVDEVECVVALLLHKNLVKGYFAR

High Scoring Gene Products

Symbol, full name Information P value
EER5
ENHANCED ETHYLENE RESPONSE 5 		protein from Arabidopsis thaliana 2.0e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036886
        (85 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2050414 - symbol:EER5 "ENHANCED ETHYLENE RESPO...   136  2.0e-08   1


>TAIR|locus:2050414 [details] [associations]
            symbol:EER5 "ENHANCED ETHYLENE RESPONSE 5" species:3702
            "Arabidopsis thaliana" [GO:0005739 "mitochondrion" evidence=ISM]
            [GO:0009723 "response to ethylene stimulus" evidence=IMP]
            [GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;IPI]
            [GO:0048364 "root development" evidence=IMP] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IMP]
            [GO:0000303 "response to superoxide" evidence=RCA] [GO:0007165
            "signal transduction" evidence=RCA] [GO:0008219 "cell death"
            evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
            [GO:0009733 "response to auxin stimulus" evidence=RCA] [GO:0009737
            "response to abscisic acid stimulus" evidence=RCA] [GO:0009743
            "response to carbohydrate stimulus" evidence=RCA] [GO:0009751
            "response to salicylic acid stimulus" evidence=RCA] [GO:0009755
            "hormone-mediated signaling pathway" evidence=RCA] [GO:0009863
            "salicylic acid mediated signaling pathway" evidence=RCA]
            InterPro:IPR000717 Pfam:PF01399 GO:GO:0005634 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0009873 GO:GO:0048364 GO:GO:0000502
            eggNOG:COG5600 InterPro:IPR013143 SMART:SM00753 GO:GO:0016973
            HOGENOM:HOG000243116 OMA:PIMYAVA EMBL:AK118897 IPI:IPI00547839
            RefSeq:NP_179546.2 UniGene:At.39825 ProteinModelPortal:Q8GWE6
            SMR:Q8GWE6 STRING:Q8GWE6 PaxDb:Q8GWE6 PRIDE:Q8GWE6 DNASU:816475
            EnsemblPlants:AT2G19560.1 GeneID:816475 KEGG:ath:AT2G19560
            TAIR:At2g19560 InParanoid:Q8GWE6 PhylomeDB:Q8GWE6
            ProtClustDB:CLSN2690794 Genevestigator:Q8GWE6 Uniprot:Q8GWE6
        Length = 413

 Score = 136 (52.9 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 35/84 (41%), Positives = 48/84 (57%)

Query:     1 MYIVLKKVDLQVHSSRKYFGLFNFIYSLSCYIIRKQKDPSKAHQTKLDVIVKALKWLXXX 60
             +Y+VL+K++LQV     Y  L   IY     I +K  DP++AHQ KL+ I KAL+WL   
Sbjct:   316 VYLVLEKLELQV-----YQRLMKKIY-----INQKLSDPARAHQLKLEGIAKALRWLDMD 365

Query:    61 XXXXXXXXXXALLLHKNLVKGYFA 84
                        +L++KNLVKGY A
Sbjct:   366 MDLDEVECIMTILIYKNLVKGYLA 389


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.141   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       85        72   0.00091  102 3  11 22  0.39    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  506 (54 KB)
  Total size of DFA:  95 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.41u 0.16s 7.57t   Elapsed:  00:00:00
  Total cpu time:  7.41u 0.16s 7.57t   Elapsed:  00:00:00
  Start:  Fri May 10 10:19:49 2013   End:  Fri May 10 10:19:49 2013

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