BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036886
(85 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5FWP8|PCID2_XENLA PCI domain-containing protein 2 OS=Xenopus laevis GN=pcid2 PE=2
SV=1
Length = 399
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 41 KAHQTKLDVIVKALKWLEM-DMDVDEVECVVALLLHKNLVKGYFA 84
K HQ LD + ALK++E+ D+D+DEV+C++A L++ +KGY +
Sbjct: 334 KTHQLSLDAFLVALKFMEVGDVDIDEVQCIIANLIYMGHIKGYIS 378
>sp|Q5JVF3|PCID2_HUMAN PCI domain-containing protein 2 OS=Homo sapiens GN=PCID2 PE=1 SV=2
Length = 399
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 41 KAHQTKLDVIVKALKWLEM-DMDVDEVECVVALLLHKNLVKGYFA 84
K HQ LD + ALK++++ D+D+DEV+C++A L++ VKGY +
Sbjct: 334 KTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYIS 378
>sp|Q8BFV2|PCID2_MOUSE PCI domain-containing protein 2 OS=Mus musculus GN=Pcid2 PE=2 SV=1
Length = 399
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 41 KAHQTKLDVIVKALKWLEM-DMDVDEVECVVALLLHKNLVKGYFA 84
K HQ LD + ALK++ + D+D+DEV+C++A L++ +KGY +
Sbjct: 334 KTHQLSLDAFLVALKFMHVEDVDIDEVQCILANLIYMGHIKGYIS 378
>sp|Q54PX7|PCID2_DICDI PCI domain-containing protein 2 homolog OS=Dictyostelium discoideum
GN=pcid2 PE=3 SV=1
Length = 430
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 40 SKAHQTKLDVIVKALKWLEMD-MDVDEVECVVALLLHKNLVKGYFA 84
+ + + V ALKW+E D +D+DE EC+++ L++ +KGY +
Sbjct: 366 TTGQRIPIGNFVSALKWMENDAIDIDETECILSNLIYNGYLKGYIS 411
>sp|Q2TBN6|PCID2_BOVIN PCI domain-containing protein 2 OS=Bos taurus GN=PCID2 PE=2 SV=1
Length = 408
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 41 KAHQTKLDVIVKALKWLEM-DMDVDEVECVVALLLHKNLVKGYFA 84
K HQ LD + ALK++++ D+D+ EV+C++A L++ +KGY +
Sbjct: 343 KTHQLSLDAFLVALKFMQVEDVDIAEVQCILANLIYMGHIKGYIS 387
>sp|Q4WJX0|CSN12_ASPFU Protein CSN12 homolog OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=csn12 PE=3 SV=1
Length = 455
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 61 MDVDEVECVVALLLHKNLVKGYFAR 85
+D+DEVEC+++ L++K L+KGY AR
Sbjct: 412 VDIDEVECLLSNLIYKGLMKGYIAR 436
>sp|Q60YJ7|PCID2_CAEBR PCI domain-containing protein 2 homolog OS=Caenorhabditis briggsae
GN=CBG18211 PE=3 SV=1
Length = 413
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 44 QTKLDVIVKALKWLEM-DMDVDEVECVVALLLHKNLVKGYFA 84
Q LD AL+++ + D+D+DE+EC++A L+ + VKGY A
Sbjct: 349 QIPLDAFQAALRFVGVTDVDMDELECIIANLIAEKKVKGYLA 390
>sp|Q4IMN9|CSN12_GIBZE Protein CSN12 homolog OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=CSN12 PE=3 SV=2
Length = 455
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 61 MDVDEVECVVALLLHKNLVKGYFAR 85
+D DEVEC++A +++K+L+KGY AR
Sbjct: 413 VDPDEVECMLANMIYKDLMKGYIAR 437
>sp|Q95QU0|PCID2_CAEEL PCI domain-containing protein 2 homolog OS=Caenorhabditis elegans
GN=C27F2.10 PE=3 SV=1
Length = 413
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 44 QTKLDVIVKALKWLEM-DMDVDEVECVVALLLHKNLVKGYFA 84
Q LD AL+++ + D+D+DE+EC++A L+ +KGY +
Sbjct: 349 QIPLDAFQTALRFVGVTDVDMDELECIIANLIASKKIKGYLS 390
>sp|B2U9R2|SYE_RALPJ Glutamate--tRNA ligase OS=Ralstonia pickettii (strain 12J)
GN=gltX PE=3 SV=1
Length = 465
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 31 YIIR-KQKDPSKAHQTKLDVIVKALKWLEMDMD---------VDEVECVVALLLHKNL 78
+I+R + D ++ Q +DVI++A+ WL+MD+D +D VVA ++ + L
Sbjct: 39 FILRIEDTDVERSSQEAVDVILEAMDWLDMDIDEGPFYQMQRMDRYRAVVAQMVQQEL 96
>sp|Q5U3P0|PCID2_DANRE PCI domain-containing protein 2 OS=Danio rerio GN=pcid2 PE=2 SV=1
Length = 399
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 41 KAHQTKLDVIVKALKWLEM-DMDVDEVECVVALLLHKNLVKGYFA 84
+ HQ L + +L+ ++ D+D+DEV+C++A L++ +KGY +
Sbjct: 334 RTHQLPLAAFLVSLQMTKVEDVDIDEVQCILANLIYMGHIKGYIS 378
>sp|P0CR48|CSN12_CRYNJ Protein CSN12 homolog OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=CSN12 PE=3
SV=1
Length = 403
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 41 KAHQTKLDVIVKALKWLEMDMDVDEVECVVALLLHKNLVKGYFA 84
K+ + ++ ALK +D++ DEVEC+VA ++++ +KGY +
Sbjct: 338 KSTRVPIETFRLALKLHGVDVESDEVECMVANMIYRGYLKGYIS 381
>sp|P0CR49|CSN12_CRYNB Protein CSN12 homolog OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=CSN12 PE=3 SV=1
Length = 403
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 41 KAHQTKLDVIVKALKWLEMDMDVDEVECVVALLLHKNLVKGYFA 84
K+ + ++ ALK +D++ DEVEC+VA ++++ +KGY +
Sbjct: 338 KSTRVPIETFRLALKLHGVDVESDEVECMVANMIYRGYLKGYIS 381
>sp|Q6CPB1|CSN12_KLULA COP9 signalosome complex subunit 12 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=CSN12 PE=3 SV=1
Length = 424
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 60 DMDVDEVECVVALLLHKNLVKGYFA 84
D ++DE+EC++A L+ KN +KGY +
Sbjct: 378 DQELDELECILATLISKNYIKGYLS 402
>sp|Q0K926|SYE_CUPNH Glutamate--tRNA ligase OS=Cupriavidus necator (strain ATCC 17699
/ H16 / DSM 428 / Stanier 337) GN=gltX PE=3 SV=1
Length = 466
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 31 YIIR-KQKDPSKAHQTKLDVIVKALKWLEMDMD 62
+I+R + D ++ Q +DVI++++ WLEMD+D
Sbjct: 39 FILRIEDTDVERSSQEAVDVILESMAWLEMDID 71
>sp|Q9VTL1|PCID2_DROME PCI domain-containing protein 2 homolog OS=Drosophila melanogaster
GN=PCID2 PE=1 SV=2
Length = 395
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 41 KAHQTKLDVIVKALKWLEM-DMDVDEVECVVALLLHKNLVKGYFA 84
K+HQ + + AL ++ + D+ +DE C+VA L++ +KGY +
Sbjct: 332 KSHQLDMGDFLSALHFVGLTDVSLDETHCIVANLIYDGKIKGYIS 376
>sp|B3R1N9|SYE_CUPTR Glutamate--tRNA ligase OS=Cupriavidus taiwanensis (strain R1 /
LMG 19424) GN=gltX PE=3 SV=1
Length = 466
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 31 YIIR-KQKDPSKAHQTKLDVIVKALKWLEMDMD 62
+I+R + D ++ Q +DVI++++ WLE+D+D
Sbjct: 39 FILRIEDTDVERSSQEAVDVILESMAWLELDID 71
>sp|Q6N5R5|SYE_RHOPA Glutamate--tRNA ligase OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=gltX PE=3 SV=1
Length = 473
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 20 GLFNFIYSLS---CYIIR-KQKDPSKAHQTKLDVIVKALKWLEMDMDVDEV 66
LFN++Y+ ++R + D ++ Q +D I+ LKWL +D D D V
Sbjct: 25 ALFNWLYARKHGGTMLLRIEDTDRQRSTQEAIDAILDGLKWLGIDWDGDTV 75
>sp|B3E399|SYE_GEOLS Glutamate--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151
/ DSM 17278 / SZ) GN=gltX PE=3 SV=1
Length = 466
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 20 GLFNFIYSL---SCYIIR-KQKDPSKAHQTKLDVIVKALKWLEMDMD 62
LFN++Y+ +I+R + D ++ Q +D I++ ++WL +D D
Sbjct: 24 ALFNWLYARHFGGTFILRIEDTDTERSTQQSVDAILQGMEWLGLDWD 70
>sp|Q215D4|SYE_RHOPB Glutamate--tRNA ligase OS=Rhodopseudomonas palustris (strain
BisB18) GN=gltX PE=3 SV=1
Length = 474
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 20 GLFNFIYSLS---CYIIR-KQKDPSKAHQTKLDVIVKALKWLEMDMDVDEVECVVALLLH 75
LFN++Y+ ++R + D ++ Q +D I+ LKWLE+ D D V H
Sbjct: 25 ALFNWLYAKKRGGKMLLRIEDTDRERSTQAAIDAILDGLKWLELGWDGDVVYQYANAARH 84
Query: 76 KNLVKGYFA 84
+ +V A
Sbjct: 85 REVVDEMLA 93
>sp|Q6CXW3|ATG7_KLULA Ubiquitin-like modifier-activating enzyme ATG7 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=ATG7 PE=3 SV=1
Length = 603
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 38 DPSKAHQTKLDVIVKALKW-LEMDMDVDEVECVVALLLHKNLVKGYFAR 85
DP K + +D+ +K +KW + D+D++ ++ + AL+L + Y AR
Sbjct: 275 DPVKIAEQSIDLNLKLMKWRIAPDIDLERIKNIKALILGSGTLGCYVAR 323
>sp|Q2KVX0|SYQ_BORA1 Glutamine--tRNA ligase OS=Bordetella avium (strain 197N) GN=glnS
PE=3 SV=1
Length = 586
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 30 CYIIRKQKDPSKAHQTKLDVIVKALKWLEMDMDVD 64
C++ +P K Q +D I++A++WL D + D
Sbjct: 86 CHLRFDDTNPEKEDQEYVDAIIEAVRWLGFDWNTD 120
>sp|B1XY56|SYE_LEPCP Glutamate--tRNA ligase OS=Leptothrix cholodnii (strain ATCC 51168
/ LMG 8142 / SP-6) GN=gltX PE=3 SV=1
Length = 468
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 31 YIIR-KQKDPSKAHQTKLDVIVKALKWLEMDMD 62
+++R + D ++ Q +DVIV+ +KWL +D D
Sbjct: 42 FVLRIEDTDVERSSQAAVDVIVEGMKWLGLDHD 74
>sp|Q9U8Q4|PRSN_PIERA Pierisin OS=Pieris rapae PE=1 SV=1
Length = 850
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 2 YIVLKKVDLQVHSSRKYFGLFNFIYSLSCYIIRKQKDPSKA 42
++ L +D H +YF + CY+IR DP+ A
Sbjct: 783 FVKLGNIDGPDHGDLRYFWTIEYSMQTGCYLIRSLHDPANA 823
>sp|Q756G8|ATG7_ASHGO Ubiquitin-like modifier-activating enzyme ATG7 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=ATG7 PE=3 SV=1
Length = 625
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 38 DPSKAHQTKLDVIVKALKW-LEMDMDVDEVECVVALLLHKNLVKGYFAR 85
DP+K + +D+ +K +KW L D+++D V+ LLL + Y AR
Sbjct: 284 DPTKLAEQSIDLNLKLMKWRLVPDINLDIVKNCKVLLLGAGTLGCYVAR 332
>sp|Q7VU94|SYQ_BORPE Glutamine--tRNA ligase OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=glnS PE=3 SV=1
Length = 587
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 26 YSLSCYIIRKQKDPSKAHQTKLDVIVKALKWLEMDMDVD 64
Y C++ +P K Q +D I++A+ WL D D
Sbjct: 82 YGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQAD 120
>sp|Q7W4T0|SYQ_BORPA Glutamine--tRNA ligase OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=glnS PE=3 SV=1
Length = 587
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 26 YSLSCYIIRKQKDPSKAHQTKLDVIVKALKWLEMDMDVD 64
Y C++ +P K Q +D I++A+ WL D D
Sbjct: 82 YGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQAD 120
>sp|Q7WGA6|SYQ_BORBR Glutamine--tRNA ligase OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=glnS PE=3 SV=1
Length = 587
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 26 YSLSCYIIRKQKDPSKAHQTKLDVIVKALKWLEMDMDVD 64
Y C++ +P K Q +D I++A+ WL D D
Sbjct: 82 YGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQAD 120
>sp|Q9GV36|PRSN_PIEBR Pierisin OS=Pieris brassicae PE=1 SV=1
Length = 850
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 2 YIVLKKVDLQVHSSRKYFGLFNFIYSLSCYIIRKQKDPSKA 42
++ L +D H +YF + CY+IR DP+ A
Sbjct: 783 FVKLDNIDGPDHGDLRYFWTIEYSMQTGCYLIRSLYDPAHA 823
>sp|Q5AWA2|ATG7_EMENI Ubiquitin-like modifier-activating enzyme atg7 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=atg7 PE=3 SV=2
Length = 662
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 33 IRKQKDPSKAHQTKLDVIVKALKW-LEMDMDVDEVECVVALLLHKNLVKGYFAR 85
+ +Q DP + +D+ +K +KW + ++D+++++ LLL + Y AR
Sbjct: 320 LTEQLDPKRLADQSVDLNLKLMKWRISPNLDLEKIKGTKCLLLGAGTLGSYVAR 373
>sp|B2S076|SYE_BORHD Glutamate--tRNA ligase OS=Borrelia hermsii (strain DAH) GN=gltX
PE=3 SV=1
Length = 491
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 20 GLFNFIYSLSC---YIIR-KQKDPSKAHQTKLDVIVKALKWLEMDMD 62
LFN+ ++ SC +++R + D S+ Q + + ++LKWL +D D
Sbjct: 23 ALFNYFFARSCGGKFLLRIEDTDQSRYFQEAEEDLYQSLKWLGIDFD 69
>sp|Q7SD63|CSN12_NEUCR Protein CSN12 homolog OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=csn-12
PE=3 SV=1
Length = 461
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 9/34 (26%)
Query: 61 MDVDEVECVVALLLH---------KNLVKGYFAR 85
++ DE+EC++A +++ KNL+KGY AR
Sbjct: 410 LETDEIECLMANMIYKLVTNQSGIKNLMKGYIAR 443
>sp|Q07NH8|SYE_RHOP5 Glutamate--tRNA ligase OS=Rhodopseudomonas palustris (strain
BisA53) GN=gltX PE=3 SV=1
Length = 474
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 20 GLFNFIYSLSC---YIIR-KQKDPSKAHQTKLDVIVKALKWLEMDMDVDEVECVVALLLH 75
LFN++Y+ ++R + D ++ Q ++ I+ +KWLE+ D D V H
Sbjct: 25 ALFNWLYAKKTGGKMLLRIEDTDRERSTQPAIEAILDGMKWLELGWDGDVVYQFSRAARH 84
Query: 76 KNLVKGYFA 84
+ +V+ A
Sbjct: 85 REVVETMLA 93
>sp|Q6BGR7|CSN12_DEBHA Protein CSN12 homolog OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=CSN12 PE=3
SV=2
Length = 438
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 32 IIRKQKDPSKAHQTKLDVIVKALKWLEMDM---------DVDEVECVVALLLHKNLVKGY 82
II +K+H L I AL++ D ++D VEC++A L+ +KGY
Sbjct: 357 IIHSLNSETKSHIVPLSAIQLALEFSTNDSYKESDKFAYNLDAVECILANLISSGKIKGY 416
Query: 83 FA 84
+
Sbjct: 417 LS 418
>sp|B2A4B3|SYE_NATTJ Glutamate--tRNA ligase OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=gltX PE=3
SV=1
Length = 488
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 11 QVHSSRKYFGLFNFIYSLSC---YIIR-KQKDPSKAHQTKLDVIVKALKWLEMDMD 62
Q+H LFN++YS +I+R + D +++ + +I +AL WL +D D
Sbjct: 16 QIHIGNIRTALFNWLYSRHIDGEFILRVEDTDMNRSVEEYEQIIFRALSWLGLDWD 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,495,789
Number of Sequences: 539616
Number of extensions: 923025
Number of successful extensions: 2688
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2659
Number of HSP's gapped (non-prelim): 38
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)