BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036887
         (366 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CSE|1 Chain 1, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
           Electron And Image Reconstruction Of The Virion At 7.0-A
           Resolution
          Length = 1267

 Score = 30.4 bits (67), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 191 YNPSQYANLLLNHYARQLLALYSVGLRNFFL---AGIGPLGCIPNQRGSGQAPPGRCVDY 247
           +  +Q ANL  +H +  +LA  S+GLRN        I PL  +P Q+ S  AP     DY
Sbjct: 492 FQAAQLANLPFSHTSVAILADTSMGLRNQVQRRPRSIMPLN-VPQQQVS--APHTLTADY 548

Query: 248 VN 249
           +N
Sbjct: 549 IN 550


>pdb|1MUK|A Chain A, Reovirus Lambda3 Native Structure
 pdb|1MWH|A Chain A, Reovirus Polymerase Lambda3 Bound To Mrna Cap Analog
 pdb|1N1H|A Chain A, Initiation Complex Of Polymerase Lambda3 From Reovirus
 pdb|1N35|A Chain A, Lambda3 Elongation Complex With Four Phosphodiester Bond
           Formed
 pdb|1N38|A Chain A, Reovirus Polymerase Lambda3 Elongation Complex With One
           Phosphodiester Bond Formed
 pdb|1UON|A Chain A, Reovirus Polymerase Lambda-3 Localized By Electron
           Cryomicroscopy Of Virions At 7.6-a Resolution
          Length = 1267

 Score = 30.4 bits (67), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 191 YNPSQYANLLLNHYARQLLALYSVGLRNFFL---AGIGPLGCIPNQRGSGQAPPGRCVDY 247
           +  +Q ANL  +H +  +LA  S+GLRN        I PL  +P Q+ S  AP     DY
Sbjct: 492 FQAAQLANLPFSHTSVAILADTSMGLRNQVQRRPRSIMPLN-VPQQQVS--APHTLTADY 548

Query: 248 VN 249
           +N
Sbjct: 549 IN 550


>pdb|1T3K|A Chain A, Nmr Structure Of A Cdc25-Like Dual-Specificity Tyrosine
           Phosphatase Of Arabidopsis Thaliana
          Length = 152

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 107 LLGGVNYASAAAGILDETGQHYGQRYTLSQQVLNFESTLNQLRGIMGASNLTNYLSKS 164
           + G ++YAS   G  D+   H  Q     +  L F S L+Q+RG   A  L NYL + 
Sbjct: 60  IAGSLHYAS---GSFDDKISHLVQNVK-DKDTLVFHSALSQVRGPTCARRLVNYLDEK 113


>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
 pdb|2BKU|B Chain B, Kap95p:rangtp Complex
 pdb|2BKU|D Chain D, Kap95p:rangtp Complex
 pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
 pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
           The Gtp- Bound Conformation: Implications For Nuclear
           Import Complex Assembly Dynamics
          Length = 861

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 229 CIPNQRGSGQAPPGRCVDYVNQILGPFNEGLRSLVDQLNKRPGAMFVY-GNTYGSVGDIL 287
           C+  Q    +      +DY  ++L    +    +V  L+ +P A+F Y G  +  +  + 
Sbjct: 728 CVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVA 787

Query: 288 NNPATFGFNVVDRACCGI 305
            +P  +  +   RA  G+
Sbjct: 788 EDPQLYSEDATSRAAVGL 805


>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
          Length = 861

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 229 CIPNQRGSGQAPPGRCVDYVNQILGPFNEGLRSLVDQLNKRPGAMFVY-GNTYGSVGDIL 287
           C+  Q    +      +DY  ++L    +    +V  L+ +P A+F Y G  +  +  + 
Sbjct: 728 CVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVA 787

Query: 288 NNPATFGFNVVDRACCGI 305
            +P  +  +   RA  G+
Sbjct: 788 EDPQLYSEDATSRAAVGL 805


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,631,502
Number of Sequences: 62578
Number of extensions: 514270
Number of successful extensions: 893
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 19
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)