BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036889
MARMVVLKMMTMNDEKTKQKAIEAAADIYGVDSITADLKEQKLIIIGDMDAVAIAKKLKK
IGKIEIVSVGPAKADTKEEEKKDDKK

High Scoring Gene Products

Symbol, full name Information P value
AT5G23760 protein from Arabidopsis thaliana 2.9e-16
AT1G01490 protein from Arabidopsis thaliana 7.8e-07
AT5G52740 protein from Arabidopsis thaliana 3.0e-05
AT5G52760 protein from Arabidopsis thaliana 0.00035

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036889
        (86 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2172808 - symbol:AT5G23760 "AT5G23760" species...   202  2.9e-16   1
TAIR|locus:2025421 - symbol:AT1G01490 species:3702 "Arabi...   113  7.8e-07   1
TAIR|locus:2149584 - symbol:AT5G52740 "AT5G52740" species...    98  3.0e-05   1
TAIR|locus:2149614 - symbol:AT5G52760 species:3702 "Arabi...    88  0.00035   1


>TAIR|locus:2172808 [details] [associations]
            symbol:AT5G23760 "AT5G23760" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0046872
            "metal ion binding" evidence=ISS] EMBL:CP002688
            GenomeReviews:BA000015_GR EMBL:BT024557 IPI:IPI00535681
            RefSeq:NP_568436.1 UniGene:At.8741 ProteinModelPortal:Q2HIM4
            SMR:Q2HIM4 PaxDb:Q2HIM4 PRIDE:Q2HIM4 EnsemblPlants:AT5G23760.1
            GeneID:832441 KEGG:ath:AT5G23760 TAIR:At5g23760 eggNOG:NOG259881
            HOGENOM:HOG000237719 InParanoid:Q2HIM4 OMA:TIIGEMD PhylomeDB:Q2HIM4
            ProtClustDB:CLSN2689856 Genevestigator:Q2HIM4 Uniprot:Q2HIM4
        Length = 103

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 41/71 (57%), Positives = 52/71 (73%)

Query:     1 MARMVVLKMMTMNDEKTKQKAIEAAADIYGVDSITADLKEQKLIIIGDMDXXXXXXXXXX 60
             MA+ VVLK++TM D+KTKQKAIEAAADI+GVDSI AD+K+QKL +IG MD          
Sbjct:     1 MAQKVVLKVLTMTDDKTKQKAIEAAADIFGVDSIAADMKDQKLTVIGLMDAVAVVKKLKK 60

Query:    61 XXXXEIVSVGP 71
                 +++SVGP
Sbjct:    61 VGKVDLISVGP 71


>TAIR|locus:2025421 [details] [associations]
            symbol:AT1G01490 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002684
            GO:GO:0046872 GO:GO:0030001 EMBL:AY063805 EMBL:AY091276 EMBL:Y10084
            IPI:IPI00534476 RefSeq:NP_001030928.1 RefSeq:NP_171656.1
            UniGene:At.27454 ProteinModelPortal:O03982 PaxDb:O03982
            PRIDE:O03982 EnsemblPlants:AT1G01490.1 EnsemblPlants:AT1G01490.2
            GeneID:839440 KEGG:ath:AT1G01490 TAIR:At1g01490 eggNOG:NOG282717
            InParanoid:O03982 OMA:TYYYAQS PhylomeDB:O03982
            ProtClustDB:CLSN2912783 ArrayExpress:O03982 Genevestigator:O03982
            Uniprot:O03982
        Length = 177

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 25/70 (35%), Positives = 42/70 (60%)

Query:     3 RMVVLKMMTMNDEKTKQKAIEAAADIYGVDSITADLKEQKLIIIGDMDXXXXXXXXXXXX 62
             + +VLK+  ++D++ KQKA++  + + G+DSI  D+KE+KL +IG +D            
Sbjct:     2 KKIVLKL-DLHDDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYW 60

Query:    63 -XXEIVSVGP 71
                +IV VGP
Sbjct:    61 PMTDIVLVGP 70


>TAIR|locus:2149584 [details] [associations]
            symbol:AT5G52740 "AT5G52740" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0030001
            "metal ion transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] [GO:0009627 "systemic acquired resistance"
            evidence=RCA] [GO:0034976 "response to endoplasmic reticulum
            stress" evidence=RCA] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0030001 EMBL:AB025606
            HOGENOM:HOG000237719 IPI:IPI00529707 RefSeq:NP_200086.1
            UniGene:At.55513 ProteinModelPortal:Q9LTE3 SMR:Q9LTE3
            EnsemblPlants:AT5G52740.1 GeneID:835351 KEGG:ath:AT5G52740
            TAIR:At5g52740 eggNOG:NOG241888 InParanoid:Q9LTE3 OMA:CHTEFIS
            PhylomeDB:Q9LTE3 ProtClustDB:CLSN2916212 Genevestigator:Q9LTE3
            Uniprot:Q9LTE3
        Length = 118

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query:     3 RMVVLKMMTMNDEKTKQKAIEAAADIYGVDSITADLKEQKLIIIGDMDXXXXXXXXXXXX 62
             ++VVLK+  ++ EKTKQKA+     + GV+S+  ++K+ KL + G++D            
Sbjct:     2 QVVVLKL-DVHCEKTKQKAMSTVCCLSGVNSV--EVKDGKLTVTGEIDAYMIVKKLKKIC 58

Query:    63 XXEIVSVGP 71
               E +SVGP
Sbjct:    59 HTEFISVGP 67


>TAIR|locus:2149614 [details] [associations]
            symbol:AT5G52760 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0046872 "metal ion binding"
            evidence=ISS] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0002237
            "response to molecule of bacterial origin" evidence=RCA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=RCA] [GO:0006612 "protein targeting to membrane"
            evidence=RCA] [GO:0009581 "detection of external stimulus"
            evidence=RCA] [GO:0009595 "detection of biotic stimulus"
            evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
            [GO:0009627 "systemic acquired resistance" evidence=RCA]
            [GO:0009697 "salicylic acid biosynthetic process" evidence=RCA]
            [GO:0009814 "defense response, incompatible interaction"
            evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
            acid mediated signaling pathway" evidence=RCA] [GO:0009867
            "jasmonic acid mediated signaling pathway" evidence=RCA]
            [GO:0010200 "response to chitin" evidence=RCA] [GO:0010310
            "regulation of hydrogen peroxide metabolic process" evidence=RCA]
            [GO:0010363 "regulation of plant-type hypersensitive response"
            evidence=RCA] [GO:0031348 "negative regulation of defense response"
            evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] [GO:0043069 "negative regulation of programmed cell
            death" evidence=RCA] [GO:0043900 "regulation of multi-organism
            process" evidence=RCA] [GO:0045088 "regulation of innate immune
            response" evidence=RCA] [GO:0050832 "defense response to fungus"
            evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB025606
            HOGENOM:HOG000237719 EMBL:BT006168 EMBL:BT008537 EMBL:AK229625
            IPI:IPI00537065 RefSeq:NP_200088.1 UniGene:At.29597
            ProteinModelPortal:Q9LTE1 STRING:Q9LTE1 EnsemblPlants:AT5G52760.1
            GeneID:835353 KEGG:ath:AT5G52760 TAIR:At5g52760 eggNOG:NOG244508
            OMA:DEPNCVI PhylomeDB:Q9LTE1 ProtClustDB:CLSN2686120
            ArrayExpress:Q9LTE1 Genevestigator:Q9LTE1 Uniprot:Q9LTE1
        Length = 126

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 23/68 (33%), Positives = 39/68 (57%)

Query:     2 ARMVVLKMMTMNDEKTKQKAIEAAADIYGVDSITADLKEQKLIIIGDMDXXXXXXXXXXX 61
             A+  VL++ ++++E+T++KA+   +   GV SIT D K  K+ I+G++D           
Sbjct:     3 AKNAVLQL-SIHEERTRKKALVTVSRFSGVTSITMD-KSGKMTIVGEVDVPAVVMKLRKL 60

Query:    62 XXXEIVSV 69
                EIVSV
Sbjct:    61 CNTEIVSV 68


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.338    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       86        57   0.00091  102 3  10 22  0.45    27
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  394 (42 KB)
  Total size of DFA:  72 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.15u 0.15s 9.30t   Elapsed:  00:00:00
  Total cpu time:  9.16u 0.15s 9.31t   Elapsed:  00:00:00
  Start:  Fri May 10 10:22:25 2013   End:  Fri May 10 10:22:25 2013

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