BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036889
(86 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6L3Z4|R1B12_SOLDE Putative late blight resistance protein homolog R1B-12 OS=Solanum
demissum GN=R1B-12 PE=3 SV=2
Length = 1348
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 3 RMVVLKMMTMNDEKTKQKAIEAAAD----IYGVDSITADLKEQKLIIIGDMDA 51
++V++K M + + + +K I A D + G+ SI D E+K I+IGDMDA
Sbjct: 1280 KLVIVKKMVLKFDTSNEKEISKAFDRLLSLPGIQSIAVDSNEKKFIVIGDMDA 1332
>sp|Q6L440|R1A3_SOLDE Putative late blight resistance protein homolog R1A-3 OS=Solanum
demissum GN=R1A-3 PE=5 SV=2
Length = 775
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 3 RMVVLKMMTMNDEKTKQKAIEAA----ADIYGVDSITADLKEQKLIIIGDMDA 51
++V++K M + + + K I+ A A + GVDSI+ D+ E+KL + GDM+A
Sbjct: 707 KLVIIKKMILQFDISHDKEIDNAFKRLASLPGVDSISIDMIEKKLTVGGDMNA 759
>sp|Q6L438|R1A6_SOLDE Putative late blight resistance protein homolog R1A-6 OS=Solanum
demissum GN=R1A-6 PE=3 SV=2
Length = 1306
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
Query: 30 GVDSITADLKEQKLIIIGDMDA---VAIAKKLKKIG 62
G++S+++D KE+KL + GD+DA + +KL+K G
Sbjct: 1267 GIESVSSDEKEKKLTVTGDVDADEVQLVVEKLRKCG 1302
>sp|Q60CZ8|R1A10_SOLDE Putative late blight resistance protein homolog R1A-10 OS=Solanum
demissum GN=R1A-10 PE=3 SV=1
Length = 1306
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
Query: 30 GVDSITADLKEQKLIIIGDMDA---VAIAKKLKKIG 62
G++S+++D KE+KL + GD+DA + +KL+K G
Sbjct: 1267 GIESVSSDEKEKKLTVTGDVDADEVQLVVEKLRKCG 1302
>sp|Q6L403|R1B17_SOLDE Putative late blight resistance protein homolog R1B-17 OS=Solanum
demissum GN=R1B-17 PE=3 SV=1
Length = 1312
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 4 MVVLKMMTMND---EKTKQKAIEAAADIYGVDSITADLKEQKLIIIGDMDA---VAIAKK 57
+V+ KMM D K + + + A + G+ S+ D ++KL + GDMDA + K
Sbjct: 1246 VVIKKMMWKVDVGVNKGRLETFKRLAPLPGIKSVAFDFNKKKLTVTGDMDANEVQLVVSK 1305
Query: 58 LKKIGKI 64
L+K G +
Sbjct: 1306 LRKRGML 1312
>sp|Q6L3N7|R1C3_SOLDE Putative late blight resistance protein homolog R1C-3 OS=Solanum
demissum GN=R1C-3 PE=3 SV=1
Length = 1292
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 27 DIYGVDSITADLKEQKLIIIGDMDAVAIAKKLKKIGKI 64
D+ G++SI+ D+KE+KL + D+DA + ++K+ +
Sbjct: 1236 DMKGIESISTDMKEKKLTVTRDVDADEVQLVVEKLRNV 1273
>sp|Q6L3L0|R1B23_SOLDE Putative late blight resistance protein homolog R1B-23 OS=Solanum
demissum GN=R1B-23 PE=3 SV=1
Length = 1262
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 27 DIYGVDSITADLKEQKLIIIGDMDAVAIAKKLKKIGKI 64
D+ G++SI+ D+KE+KL + D+DA + ++K+ +
Sbjct: 1206 DMKGIESISTDMKEKKLTVTRDVDADEVQLVVEKLRNV 1243
>sp|Q3SLQ9|RL1_THIDA 50S ribosomal protein L1 OS=Thiobacillus denitrificans (strain ATCC
25259) GN=rplA PE=3 SV=1
Length = 231
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 19 QKAIEAAADIYGVDSITADLKEQKL---IIIGDMDAVAIAKKLKKI 61
QKA +A ADI G D + AD+K K+ ++I DA+ + +L +I
Sbjct: 85 QKARDAGADIVGFDDLAADIKAGKMDFDVVIATPDAMRVVGQLGQI 130
>sp|Q6L406|R1B19_SOLDE Putative late blight resistance protein homolog R1B-19 OS=Solanum
demissum GN=R1B-19 PE=5 SV=2
Length = 1326
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 30 GVDSITADLKEQKLIIIGDMDA 51
G++S++ D KE+KL + GD+DA
Sbjct: 1236 GIESVSTDRKEKKLTVTGDVDA 1257
>sp|Q6L3Z7|R1B14_SOLDE Putative late blight resistance protein homolog R1B-14 OS=Solanum
demissum GN=R1B-14 PE=3 SV=1
Length = 1317
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 3 RMVVLKMMTM------NDEKTKQKAIEAAADIYGVDSITADLKEQKLIIIGDMDA---VA 53
++V++K M + N +K + + + + GV S+ D+ E+K+ + G MDA
Sbjct: 1247 KLVIIKKMVLKFDIYQNHDKGRLETFKKLVPLPGVKSVRFDMDEKKVTVTGVMDANEVQL 1306
Query: 54 IAKKLKKIGKI 64
+ KL+K G +
Sbjct: 1307 VVSKLRKRGML 1317
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.321
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,530,326
Number of Sequences: 539616
Number of extensions: 934018
Number of successful extensions: 3576
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3552
Number of HSP's gapped (non-prelim): 60
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)