BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036892
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 181/456 (39%), Positives = 256/456 (56%), Gaps = 62/456 (13%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGE-GIIWGKTHFLEAVGLPIS 81
+ A+G+TNQRET V+W K+TG P+YNAIVW D R + E G G + VGLP++
Sbjct: 72 IAAVGITNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDELGGDEGAEKYKSIVGLPLA 131
Query: 82 TCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTM 141
T F+ K+ W+++NV+ +E +KGD LFG DTW++WN+TGG GG+HVTDV+NASRTM
Sbjct: 132 TYFSGPKIKWILDNVEGAREKAEKGDLLFGNTDTWVLWNMTGGTEGGVHVTDVTNASRTM 191
Query: 142 LMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKLGKGWPITGIPISGCLGDHHAAML 201
LM+L TL W + +GIP +LP S+SE+ G + G+PI+G LGD AA
Sbjct: 192 LMDLDTLSWREDIAADMGIPLSMLPDIRSSSEVYGHGRPRGLVPGVPIAGILGDQQAATF 251
Query: 202 GQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIA 260
GQAC + G+ K+TYGTG F+LLNTG E V SK+ LL+T+ +K+G AP YALEGS+A+
Sbjct: 252 GQACFEVGQAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIG-DAPAVYALEGSIAVT 310
Query: 261 GAAVQWLRDSLGVISSASEIEELALQVHKQG----------------------------- 291
G+ VQWLRD+LG+ A ++E LA +V G
Sbjct: 311 GSLVQWLRDNLGMFEDAPDVEWLAGKVQDNGGAYFVPAFSGLFAPYWRPDARGALVGLTR 370
Query: 292 --SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFE 349
++ HIARA LE+ FQ ++V+D++ D+ GV LRVDG + AN LL+ F+
Sbjct: 371 YVNRNHIARAALEATAFQSREVVDAMNADS---GVDLTE---LRVDGGMVAN-ELLMQFQ 423
Query: 350 KXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFK-EEEIFASGE 408
AD LG V+RP ETT +G +K E+++ +
Sbjct: 424 -----------------ADQLGVDVVRPKVAETTALGAAYAAGIAVGFWKGEQDVIDNWA 466
Query: 409 RTKTSTTFKPVLNEEFRKKKAESWCRAVERIFNLAD 444
K + P + R++ +W +AV + D
Sbjct: 467 EDK---RWSPSMESGERERLYRNWKKAVTKTMEWVD 499
>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLB|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli
Iiiglc With Glycerol Kinase
pdb|1GLC|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLD|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLE|G Chain G, Cation Promoted Association (Cpa) Of A Regulatory And
Target Protein Is Controlled By Phosphorylation
pdb|1GLF|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1GLF|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BOT|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BOT|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|O Chain O, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate.
pdb|1BO5|Z Chain Z, Crystal Structure Of The Complex Between Escherichia Coli
Glycerol Kinase And The Allosteric Regulator Fructose
1,6-bisphosphate
Length = 501
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/453 (38%), Positives = 251/453 (55%), Gaps = 71/453 (15%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIWG--KTHFLEAVGLPI 80
+ AIG+TNQRETT++W K TG P+YNAIVW R ++EI E + + + GL I
Sbjct: 74 IAAIGITNQRETTIVWEKETGKPIYNAIVWQ-CRRTAEICEHLKRDGLEDYIRSNTGLVI 132
Query: 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRT 140
F+ K+ W++++V+ +E ++G+ LFGT+DTWLIW +T G +HVTD +NASRT
Sbjct: 133 DPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---QGRVHVTDYTNASRT 189
Query: 141 MLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKL---GKGWPITGIPISGCLGDHH 197
ML N+ TLDWD LE L IP E+LP+ +SE+ G+ GKG T IPISG GD
Sbjct: 190 MLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGG--TRIPISGIAGDQQ 247
Query: 198 AAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGS 256
AA+ GQ C K+G K+TYGTG F+L+NTGE+ VKS++ LL+T+A GP NYALEG+
Sbjct: 248 AALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA--CGPTGEVNYALEGA 305
Query: 257 VAIAGAAVQWLRDSLGVISSASEIEELALQV----------------------HKQGSQL 294
V +AGA++QWLRD + +I+ A + E A +V + +G+
Sbjct: 306 VFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIF 365
Query: 295 ---------HIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
HI RA LES+ +Q +DVL+++Q D+ G+ A LRVDG AN L
Sbjct: 366 GLTRGVNANHIIRATLESIAYQTRDVLEAMQADS---GIRLHA---LRVDGGAVAN-NFL 418
Query: 346 LSFEKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFA 405
+ F+ +D+LG+ V RP E T +G ++ +
Sbjct: 419 MQFQ-----------------SDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQ 461
Query: 406 SGERTKTSTTFKPVLNEEFRKKKAESWCRAVER 438
E+ F+P + R + W +AV+R
Sbjct: 462 --EKAVIEREFRPGIETTERNYRYAGWKKAVKR 492
>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Y Chain Y, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|Z Chain Z, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
pdb|1BU6|X Chain X, Crystal Structures Of Escherichia Coli Glycerol Kinase And
The Mutant A65t In An Inactive Tetramer: Conformational
Changes And Implications For Allosteric Regulation
Length = 501
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/453 (38%), Positives = 251/453 (55%), Gaps = 71/453 (15%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIWG--KTHFLEAVGLPI 80
+ AIG+TNQRETT++W K TG P+YNAIVW R ++EI E + + + GL I
Sbjct: 74 IAAIGITNQRETTIVWEKETGKPIYNAIVWQ-CRRTAEICEHLKRDGLEDYIRSNTGLVI 132
Query: 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRT 140
F+ K+ W++++V+ +E ++G+ LFGT+DTWLIW +T G +HVTD +NASRT
Sbjct: 133 DPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---QGRVHVTDYTNASRT 189
Query: 141 MLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKL---GKGWPITGIPISGCLGDHH 197
ML N+ TLDWD LE L IP E+LP+ +SE+ G+ GKG T IPISG GD
Sbjct: 190 MLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKGG--TRIPISGIAGDQQ 247
Query: 198 AAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGS 256
AA+ GQ C K+G K+TYGTG F+L+NTGE+ VKS++ LL+T+A GP NYALEG+
Sbjct: 248 AALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA--CGPTGEVNYALEGA 305
Query: 257 VAIAGAAVQWLRDSLGVISSASEIEELALQV----------------------HKQGSQL 294
V +AGA++QWLRD + +I+ A + E A +V + +G+
Sbjct: 306 VFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIF 365
Query: 295 ---------HIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
HI RA LES+ +Q +DVL+++Q D+ G+ A LRVDG AN L
Sbjct: 366 GLTRGVNANHIIRATLESIAYQTRDVLEAMQADS---GIRLHA---LRVDGGAVAN-NFL 418
Query: 346 LSFEKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFA 405
+ F+ +D+LG+ V RP E T +G ++ +
Sbjct: 419 MQFQ-----------------SDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQ 461
Query: 406 SGERTKTSTTFKPVLNEEFRKKKAESWCRAVER 438
E+ F+P + R + W +AV+R
Sbjct: 462 --EKAVIEREFRPGIETTERNYRYAGWKKAVKR 492
>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1BWF|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLJ|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
pdb|1GLL|O Chain O, Escherichia Coli Glycerol Kinase Mutant With Bound Atp
Analog Showing Substantial Domain Motion
Length = 501
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/453 (38%), Positives = 251/453 (55%), Gaps = 71/453 (15%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIWG--KTHFLEAVGLPI 80
+ AIG+TNQRETT++W K TG P+YNAIVW R ++EI E + + + GL I
Sbjct: 74 IAAIGITNQRETTIVWEKETGKPIYNAIVWQ-CRRTAEICEHLKRDGLEDYIRSNTGLVI 132
Query: 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRT 140
F+ K+ W++++V+ +E ++G+ LFGT+DTWLIW +T G +HVTD +NASRT
Sbjct: 133 DPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---QGRVHVTDYTNASRT 189
Query: 141 MLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKL---GKGWPITGIPISGCLGDHH 197
ML N+ TLDWD LE L IP E+LP+ +SE+ G+ GKG T IPISG GD
Sbjct: 190 MLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGGKG--GTRIPISGIAGDQQ 247
Query: 198 AAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGS 256
AA+ GQ C K+G K+TYGTG F+L+NTGE+ VKS++ LL+T+A GP NYALEG+
Sbjct: 248 AALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA--CGPTGEVNYALEGA 305
Query: 257 VAIAGAAVQWLRDSLGVISSASEIEELALQV----------------------HKQGSQL 294
V +AGA++QWLRD + +I+ A + E A +V + +G+
Sbjct: 306 VFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIF 365
Query: 295 ---------HIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
HI RA LES+ +Q +DVL+++Q D+ G+ A LRVDG AN L
Sbjct: 366 GLTRGVNANHIIRATLESIAYQTRDVLEAMQADS---GIRLHA---LRVDGGAVAN-NFL 418
Query: 346 LSFEKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFA 405
+ F+ +D+LG+ V RP E T +G ++ +
Sbjct: 419 MQFQ-----------------SDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQ 461
Query: 406 SGERTKTSTTFKPVLNEEFRKKKAESWCRAVER 438
E+ F+P + R + W +AV+R
Sbjct: 462 --EKAVIEREFRPGIETTERNYRYAGWKKAVKR 492
>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|B Chain B, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|E Chain E, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|G Chain G, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|C Chain C, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|D Chain D, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|F Chain F, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
pdb|3EZW|H Chain H, Crystal Structure Of A Hyperactive Escherichia Coli
Glycerol Kinase Mutant Gly230 --> Asp Obtained Using
Microfluidic Crystallization Devices
Length = 526
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/453 (38%), Positives = 251/453 (55%), Gaps = 71/453 (15%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIWG--KTHFLEAVGLPI 80
+ AIG+TNQRETT++W K TG P+YNAIVW R ++EI E + + + GL I
Sbjct: 74 IAAIGITNQRETTIVWEKETGKPIYNAIVWQ-CRRTAEICEHLKRDGLEDYIRSNTGLVI 132
Query: 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRT 140
F+ K+ W++++V+ +E ++G+ LFGT+DTWLIW +T G +HVTD +NASRT
Sbjct: 133 DPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMT---QGRVHVTDYTNASRT 189
Query: 141 MLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKL---GKGWPITGIPISGCLGDHH 197
ML N+ TLDWD LE L IP E+LP+ +SE+ G+ GKG T IPISG GD
Sbjct: 190 MLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIDGKGG--TRIPISGIAGDQQ 247
Query: 198 AAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGS 256
AA+ GQ C K+G K+TYGTG F+L+NTGE+ VKS++ LL+T+A GP NYALEG+
Sbjct: 248 AALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIA--CGPTGEVNYALEGA 305
Query: 257 VAIAGAAVQWLRDSLGVISSASEIEELALQV----------------------HKQGSQL 294
V +AGA++QWLRD + +I+ A + E A +V + +G+
Sbjct: 306 VFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIF 365
Query: 295 ---------HIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
HI RA LES+ +Q +DVL+++Q D+ G+ A LRVDG AN L
Sbjct: 366 GLTRGVNANHIIRATLESIAYQTRDVLEAMQADS---GIRLHA---LRVDGGAVAN-NFL 418
Query: 346 LSFEKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFA 405
+ F+ +D+LG+ V RP E T +G ++ +
Sbjct: 419 MQFQ-----------------SDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQ 461
Query: 406 SGERTKTSTTFKPVLNEEFRKKKAESWCRAVER 438
E+ F+P + R + W +AV+R
Sbjct: 462 --EKAVIEREFRPGIETTERNYRYAGWKKAVKR 492
>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|O Chain O, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|C Chain C, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H45|D Chain D, Glycerol Kinase H232e With Ethylene Glycol
pdb|3H46|X Chain X, Glycerol Kinase H232e With Glycerol
pdb|3H46|O Chain O, Glycerol Kinase H232e With Glycerol
Length = 506
Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 171/452 (37%), Positives = 257/452 (56%), Gaps = 73/452 (16%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGI-IWGKTHFL-EAVGLPI 80
+ IG+TNQRETTV+W K+TG P+ NAIVW +R SS I + + + G T + E GL I
Sbjct: 75 IAGIGITNQRETTVVWDKTTGQPIANAIVWQ-SRQSSPIADQLKVDGHTEMIHEKTGLVI 133
Query: 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRT 140
F+A K+ W+++N++ +E G+ LFGTID+WL+W LT +G +HVTD SNASRT
Sbjct: 134 DAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNASRT 190
Query: 141 MLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKLGKGWPITG--IPISGCLGDHHA 198
ML N+ L+WD+ L+ L IP+ +LP+ SNSE+ G + + G +PI+G GD A
Sbjct: 191 MLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHT-RSYEFYGSEVPIAGMAGDQQA 249
Query: 199 AMLGQ-ACKKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSV 257
A+ GQ A +KG +K+TYGTGAFI++NTGEE S ++LL+T+ + + K YALEGS+
Sbjct: 250 ALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGK--VYYALEGSI 307
Query: 258 AIAGAAVQWLRDSLGVISSASEIEELALQVHKQGSQLHI--------------------- 296
+AG+A+QWLRD L +I ++ + EELA + K +++++
Sbjct: 308 FVAGSAIQWLRDGLRMIETSPQSEELAAKA-KGDNEVYVVPAFTGLGAPYWDSEARGAVF 366
Query: 297 -----------ARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
RA L+++ +Q KDV+D+++KD+ G+ D LL+VDG N LL
Sbjct: 367 GLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS---GI--DIP-LLKVDGGAAKN-DLL 419
Query: 346 LSFEKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKE-EEIF 404
+ F+ AD+L V R A++ETT +G +K+ +E+
Sbjct: 420 MQFQ-----------------ADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDELK 462
Query: 405 ASGERTKTSTTFKPVLNEEFRKKKAESWCRAV 436
+ E + F P + E R E W +AV
Sbjct: 463 SMAEEGQ---MFTPEMPAEERDNLYEGWKQAV 491
>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
pdb|3D7E|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Mutant
His232ala Complexed With Glycerol
Length = 505
Score = 268 bits (685), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 171/452 (37%), Positives = 257/452 (56%), Gaps = 73/452 (16%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGI-IWGKTHFL-EAVGLPI 80
+ IG+TNQRETTV+W K+TG P+ NAIVW +R SS I + + + G T + E GL I
Sbjct: 74 IAGIGITNQRETTVVWDKTTGQPIANAIVWQ-SRQSSPIADQLKVDGHTEMIHEKTGLVI 132
Query: 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRT 140
F+A K+ W+++N++ +E G+ LFGTID+WL+W LT +G +HVTD SNASRT
Sbjct: 133 DAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNASRT 189
Query: 141 MLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKLGKGWPITG--IPISGCLGDHHA 198
ML N+ L+WD+ L+ L IP+ +LP+ SNSE+ G + + G +PI+G GD A
Sbjct: 190 MLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHT-RSYAFYGSEVPIAGMAGDQQA 248
Query: 199 AMLGQ-ACKKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSV 257
A+ GQ A +KG +K+TYGTGAFI++NTGEE S ++LL+T+ + + K YALEGS+
Sbjct: 249 ALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGK--VYYALEGSI 306
Query: 258 AIAGAAVQWLRDSLGVISSASEIEELALQVHKQGSQLHI--------------------- 296
+AG+A+QWLRD L +I ++ + EELA + K +++++
Sbjct: 307 FVAGSAIQWLRDGLRMIETSPQSEELAAKA-KGDNEVYVVPAFTGLGAPYWDSEARGAVF 365
Query: 297 -----------ARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
RA L+++ +Q KDV+D+++KD+ G+ D LL+VDG N LL
Sbjct: 366 GLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS---GI--DIP-LLKVDGGAAKN-DLL 418
Query: 346 LSFEKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKE-EEIF 404
+ F+ AD+L V R A++ETT +G +K+ +E+
Sbjct: 419 MQFQ-----------------ADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDELK 461
Query: 405 ASGERTKTSTTFKPVLNEEFRKKKAESWCRAV 436
+ E + F P + E R E W +AV
Sbjct: 462 SMAEEGQ---MFTPEMPAEERDNLYEGWKQAV 490
>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol
pdb|3H3N|O Chain O, Glycerol Kinase H232r With Glycerol
pdb|3H3O|O Chain O, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|X Chain X, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|B Chain B, Glycerol Kinase H232r With Ethylene Glycol
pdb|3H3O|C Chain C, Glycerol Kinase H232r With Ethylene Glycol
Length = 506
Score = 268 bits (685), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 171/452 (37%), Positives = 257/452 (56%), Gaps = 73/452 (16%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGI-IWGKTHFL-EAVGLPI 80
+ IG+TNQRETTV+W K+TG P+ NAIVW +R SS I + + + G T + E GL I
Sbjct: 75 IAGIGITNQRETTVVWDKTTGQPIANAIVWQ-SRQSSPIADQLKVDGHTEMIHEKTGLVI 133
Query: 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRT 140
F+A K+ W+++N++ +E G+ LFGTID+WL+W LT +G +HVTD SNASRT
Sbjct: 134 DAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNASRT 190
Query: 141 MLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKLGKGWPITG--IPISGCLGDHHA 198
ML N+ L+WD+ L+ L IP+ +LP+ SNSE+ G + + G +PI+G GD A
Sbjct: 191 MLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHT-RSYRFYGSEVPIAGMAGDQQA 249
Query: 199 AMLGQ-ACKKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSV 257
A+ GQ A +KG +K+TYGTGAFI++NTGEE S ++LL+T+ + + K YALEGS+
Sbjct: 250 ALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGK--VYYALEGSI 307
Query: 258 AIAGAAVQWLRDSLGVISSASEIEELALQVHKQGSQLHI--------------------- 296
+AG+A+QWLRD L +I ++ + EELA + K +++++
Sbjct: 308 FVAGSAIQWLRDGLRMIETSPQSEELAAKA-KGDNEVYVVPAFTGLGAPYWDSEARGAVF 366
Query: 297 -----------ARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
RA L+++ +Q KDV+D+++KD+ G+ D LL+VDG N LL
Sbjct: 367 GLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS---GI--DIP-LLKVDGGAAKN-DLL 419
Query: 346 LSFEKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKE-EEIF 404
+ F+ AD+L V R A++ETT +G +K+ +E+
Sbjct: 420 MQFQ-----------------ADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDELK 462
Query: 405 ASGERTKTSTTFKPVLNEEFRKKKAESWCRAV 436
+ E + F P + E R E W +AV
Sbjct: 463 SMAEEGQ---MFTPEMPAEERDNLYEGWKQAV 491
>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase
pdb|1R59|X Chain X, Enterococcus Casseliflavus Glycerol Kinase
Length = 505
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 171/452 (37%), Positives = 257/452 (56%), Gaps = 73/452 (16%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGI-IWGKTHFL-EAVGLPI 80
+ IG+TNQRETTV+W K+TG P+ NAIVW +R SS I + + + G T + E GL I
Sbjct: 74 IAGIGITNQRETTVVWDKTTGQPIANAIVWQ-SRQSSPIADQLKVDGHTEMIHEKTGLVI 132
Query: 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRT 140
F+A K+ W+++N++ +E G+ LFGTID+WL+W LT +G +HVTD SNASRT
Sbjct: 133 DAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNASRT 189
Query: 141 MLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKLGKGWPITG--IPISGCLGDHHA 198
ML N+ L+WD+ L+ L IP+ +LP+ SNSE+ G + + G +PI+G GD A
Sbjct: 190 MLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHT-RSYHFYGSEVPIAGMAGDQQA 248
Query: 199 AMLGQ-ACKKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSV 257
A+ GQ A +KG +K+TYGTGAFI++NTGEE S ++LL+T+ + + K YALEGS+
Sbjct: 249 ALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGK--VYYALEGSI 306
Query: 258 AIAGAAVQWLRDSLGVISSASEIEELALQVHKQGSQLHI--------------------- 296
+AG+A+QWLRD L +I ++ + EELA + K +++++
Sbjct: 307 FVAGSAIQWLRDGLRMIETSPQSEELAAKA-KGDNEVYVVPAFTGLGAPYWDSEARGAVF 365
Query: 297 -----------ARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
RA L+++ +Q KDV+D+++KD+ G+ D LL+VDG N LL
Sbjct: 366 GLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS---GI--DIP-LLKVDGGAAKN-DLL 418
Query: 346 LSFEKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKE-EEIF 404
+ F+ AD+L V R A++ETT +G +K+ +E+
Sbjct: 419 MQFQ-----------------ADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDELK 461
Query: 405 ASGERTKTSTTFKPVLNEEFRKKKAESWCRAV 436
+ E + F P + E R E W +AV
Sbjct: 462 SMAEEGQ---MFTPEMPAEERDNLYEGWKQAV 490
>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
pdb|3FLC|X Chain X, Crystal Structure Of The His-Tagged H232r Mutant Of
Glycerol Kinase From Enterococcus Casseliflavus With
Glycerol
Length = 518
Score = 268 bits (684), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 171/452 (37%), Positives = 257/452 (56%), Gaps = 73/452 (16%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGI-IWGKTHFL-EAVGLPI 80
+ IG+TNQRETTV+W K+TG P+ NAIVW +R SS I + + + G T + E GL I
Sbjct: 87 IAGIGITNQRETTVVWDKTTGQPIANAIVWQ-SRQSSPIADQLKVDGHTEMIHEKTGLVI 145
Query: 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRT 140
F+A K+ W+++N++ +E G+ LFGTID+WL+W LT +G +HVTD SNASRT
Sbjct: 146 DAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNASRT 202
Query: 141 MLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKLGKGWPITG--IPISGCLGDHHA 198
ML N+ L+WD+ L+ L IP+ +LP+ SNSE+ G + + G +PI+G GD A
Sbjct: 203 MLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHT-RSYRFYGSEVPIAGMAGDQQA 261
Query: 199 AMLGQ-ACKKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSV 257
A+ GQ A +KG +K+TYGTGAFI++NTGEE S ++LL+T+ + + K YALEGS+
Sbjct: 262 ALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGK--VYYALEGSI 319
Query: 258 AIAGAAVQWLRDSLGVISSASEIEELALQVHKQGSQLHI--------------------- 296
+AG+A+QWLRD L +I ++ + EELA + K +++++
Sbjct: 320 FVAGSAIQWLRDGLRMIETSPQSEELAAKA-KGDNEVYVVPAFTGLGAPYWDSEARGAVF 378
Query: 297 -----------ARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
RA L+++ +Q KDV+D+++KD+ G+ D LL+VDG N LL
Sbjct: 379 GLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS---GI--DIP-LLKVDGGAAKN-DLL 431
Query: 346 LSFEKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKE-EEIF 404
+ F+ AD+L V R A++ETT +G +K+ +E+
Sbjct: 432 MQFQ-----------------ADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDELK 474
Query: 405 ASGERTKTSTTFKPVLNEEFRKKKAESWCRAV 436
+ E + F P + E R E W +AV
Sbjct: 475 SMAEEGQ---MFTPEMPAEERDNLYEGWKQAV 503
>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
pdb|1XUP|X Chain X, Enterococcus Casseliflavus Glycerol Kinase Complexed With
Glycerol
Length = 487
Score = 267 bits (683), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 171/452 (37%), Positives = 257/452 (56%), Gaps = 73/452 (16%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGI-IWGKTHFL-EAVGLPI 80
+ IG+TNQRETTV+W K+TG P+ NAIVW +R SS I + + + G T + E GL I
Sbjct: 70 IAGIGITNQRETTVVWDKTTGQPIANAIVWQ-SRQSSPIADQLKVDGHTEMIHEKTGLVI 128
Query: 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRT 140
F+A K+ W+++N++ +E G+ LFGTID+WL+W LT +G +HVTD SNASRT
Sbjct: 129 DAYFSATKVRWLLDNIEGAQEKADNGELLFGTIDSWLVWKLT---DGQVHVTDYSNASRT 185
Query: 141 MLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKLGKGWPITG--IPISGCLGDHHA 198
ML N+ L+WD+ L+ L IP+ +LP+ SNSE+ G + + G +PI+G GD A
Sbjct: 186 MLYNIHKLEWDQEILDLLNIPSSMLPEVKSNSEVYGHT-RSYHFYGSEVPIAGMAGDQQA 244
Query: 199 AMLGQ-ACKKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSV 257
A+ GQ A +KG +K+TYGTGAFI++NTGEE S ++LL+T+ + + K YALEGS+
Sbjct: 245 ALFGQMAFEKGMIKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGK--VYYALEGSI 302
Query: 258 AIAGAAVQWLRDSLGVISSASEIEELALQVHKQGSQLHI--------------------- 296
+AG+A+QWLRD L +I ++ + EELA + K +++++
Sbjct: 303 FVAGSAIQWLRDGLRMIETSPQSEELAAKA-KGDNEVYVVPAFTGLGAPYWDSEARGAVF 361
Query: 297 -----------ARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
RA L+++ +Q KDV+D+++KD+ G+ D LL+VDG N LL
Sbjct: 362 GLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDS---GI--DIP-LLKVDGGAAKN-DLL 414
Query: 346 LSFEKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKE-EEIF 404
+ F+ AD+L V R A++ETT +G +K+ +E+
Sbjct: 415 MQFQ-----------------ADILDIDVQRAANLETTALGAAYLAGLAVGFWKDLDELK 457
Query: 405 ASGERTKTSTTFKPVLNEEFRKKKAESWCRAV 436
+ E + F P + E R E W +AV
Sbjct: 458 SMAEEGQ---MFTPEMPAEERDNLYEGWKQAV 486
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/453 (39%), Positives = 241/453 (53%), Gaps = 78/453 (17%)
Query: 25 AIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNS----SEIGEGIIWGKTHFLEAVGLPI 80
A+G+TNQRETT+LW + TG PL+NAIVW D R + + +G+ + F E GL
Sbjct: 74 ALGITNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAKGL---EPLFRERTGLLF 130
Query: 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRT 140
F+ KL+W++ENV +K + G FGT+DTWLIWNLTGG +H TD +NASRT
Sbjct: 131 DPYFSGTKLVWLLENVPGLKARAEGGGVAFGTVDTWLIWNLTGGK---VHATDPTNASRT 187
Query: 141 MLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKLGKGWP-ITG--IPISGCLGDHH 197
+L NL TL WD LE LGIPA +LP+ + G G+ P + G +PI G LGD
Sbjct: 188 LLFNLHTLAWDPELLEALGIPAALLPEVRPSD---GDFGETLPELLGAPVPIRGVLGDQQ 244
Query: 198 AAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGS 256
AA+ GQA GE K TYGTGAF+LLNTG+ V S+ LL+T+A+ LG +A YALEGS
Sbjct: 245 AALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRA--TYALEGS 302
Query: 257 VAIAGAAVQWLRDSLGVISSASEIEELALQVHKQG------------------------- 291
+ +AGAAV WL++ +G+I ++E+E LA V G
Sbjct: 303 LFVAGAAVGWLKE-VGLIRESAEVEALAASVEDTGDVYFVPAFTGLGAPYWDPYARGTLL 361
Query: 292 ------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
S+ H+ARA LE + FQV+DV+ +++++A GV +L+ DG + N L
Sbjct: 362 GLTRGTSRAHLARAALEGVAFQVRDVVLAMEEEA---GVRLK---VLKADGGMAQN-RLF 414
Query: 346 LSFEKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFA 405
L + ADLLG PV P ETT G E++
Sbjct: 415 LKIQ-----------------ADLLGVPVAVPEVTETTALGAALMAGVGAGALSPEDVAG 457
Query: 406 SGERTKTSTTFKPVLNEEFRKKKAESWCRAVER 438
R + + F P + E R+ W AVER
Sbjct: 458 ---RFREAERFLPTMPEGRREALYRRWREAVER 487
>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|B Chain B, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|C Chain C, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3G25|D Chain D, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk)
From Staphylococcus Aureus In Complex With Glycerol.
pdb|3GE1|A Chain A, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|B Chain B, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|C Chain C, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
pdb|3GE1|D Chain D, 2.7 Angstrom Crystal Structure Of Glycerol Kinase (glpk)
From Staphylococcus Aureus In Complex With Adp And
Glycerol
Length = 501
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 162/449 (36%), Positives = 235/449 (52%), Gaps = 65/449 (14%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIWGKTH-FLEAVGLPIS 81
+ IG+TNQRETTV+W K TG P+Y+AIVW + S E G F + GL +
Sbjct: 76 IAGIGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSELKQQGYEQTFRDKTGLLLD 135
Query: 82 TCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTM 141
F K+ W+++NV+ +E + GD LFGTIDTWL+W L+G H+TD SNASRT+
Sbjct: 136 PYFAGTKVKWILDNVEGAREKAENGDLLFGTIDTWLVWKLSGKA---AHITDYSNASRTL 192
Query: 142 LMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGK-LGKGWPITGIPISGCLGDHHAAM 200
N+ L+WD LE L +P LP+ ++SE+ GK + + +PI+G GD AA+
Sbjct: 193 XFNIHDLEWDDELLELLTVPKNXLPEVKASSEVYGKTIDYHFYGQEVPIAGVAGDQQAAL 252
Query: 201 LGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAI 259
GQAC ++G+VK+TYGTG F L NTG++ VKS+ LL+T+A+ G NYALEGS+ +
Sbjct: 253 FGQACFERGDVKNTYGTGGFXLXNTGDKAVKSESGLLTTIAY--GIDGKVNYALEGSIFV 310
Query: 260 AGAAVQWLRDSLGVISSASEIEELALQVH------------------------------- 288
+G+A+QWLRD L I+SA + E A +V
Sbjct: 311 SGSAIQWLRDGLRXINSAPQSESYATRVDSTEGVYVVPAFVGLGTPYWDSEARGAIFGLT 370
Query: 289 KQGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSF 348
+ + H RA LES+C+Q +DV ++ KD+ G+ + LRVDG N + F
Sbjct: 371 RGTEKEHFIRATLESLCYQTRDVXEAXSKDS---GIDVQS---LRVDGGAVKN-NFIXQF 423
Query: 349 EKXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFASGE 408
+ AD++ + V RP ETT +G ++ ++ A +
Sbjct: 424 Q-----------------ADIVNTSVERPEIQETTALGAAFLAGLAVGFWESKDDIA--K 464
Query: 409 RTKTSTTFKPVLNEEFRKKKAESWCRAVE 437
K F P +E R+K W +AVE
Sbjct: 465 NWKLEEKFDPKXDEGEREKLYRGWKKAVE 493
>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
pdb|2ZF5|Y Chain Y, Crystal Structure Of Highly Thermostable Glycerol Kinase
From A Hyperthermophilic Archaeon
Length = 497
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 172/453 (37%), Positives = 240/453 (52%), Gaps = 69/453 (15%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIWGKTHFLEAVGLPIST 82
+ AIG+TNQRETT++W K G PLYNAIVW R + + E T E GL
Sbjct: 73 IAAIGVTNQRETTLVWDKD-GKPLYNAIVWQCRRTAEMVEEIKREYGTMIKEKTGLVPDA 131
Query: 83 CFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTML 142
F+A KL W+++NV ++E +KG+ +FGT+DT+LI+ LTG HVTD SNASRTML
Sbjct: 132 YFSASKLKWLLDNVPGLREKAEKGEVMFGTVDTFLIYRLTGE-----HVTDYSNASRTML 186
Query: 143 MNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKLGKGWPITGIPISGCLGDHHAAMLG 202
N+K LDWD LE IP +LP+ +SE+ G K IP+SG GD AA+ G
Sbjct: 187 FNIKKLDWDDELLELFDIPESVLPEVRESSEVYGYTKKELLGAEIPVSGDAGDQQAALFG 246
Query: 203 QAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIAG 261
QA + G VK+TYGTG+FIL+NT + V+ S + LL+T+A+ L + +YALEGS+ + G
Sbjct: 247 QAAFEAGMVKATYGTGSFILVNTDKMVLYSDN-LLTTIAWGLNGR--VSYALEGSIFVTG 303
Query: 262 AAVQWLRDSLGVISSASEIEELALQ-------------------------------VHKQ 290
AAVQWLRD + +I ASE EELA + + +
Sbjct: 304 AAVQWLRDGIKIIKHASETEELATKLESNEGVYFVPAFVGLGAPYWDQFARGIIIGITRG 363
Query: 291 GSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEK 350
+ H+ARA LE++ + +DV+D ++K IK+ LRVDG AN L+ F+
Sbjct: 364 TGREHLARATLEAIAYLTRDVVDEMEKLV----QIKE----LRVDGGATAN-DFLMQFQ- 413
Query: 351 XXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFASGERT 410
AD+L VIRP ETT + + + A E
Sbjct: 414 ----------------ADILNRKVIRPVVKETTALGAAYLAGLAVDYWADTREIA--ELW 455
Query: 411 KTSTTFKPVLNEEFRKKKAESWCRAVERIFNLA 443
K F+P ++E+ R++ + W AV+R A
Sbjct: 456 KAERIFEPKMDEKTRERLYKGWKEAVKRAMGWA 488
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 168/450 (37%), Positives = 227/450 (50%), Gaps = 64/450 (14%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIWG-KTHFLEAVGLPIS 81
+ AIG+TNQRET V+W + TG P++NAIVW D R ++ + G + F++ GL +
Sbjct: 96 IAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKLKKKGLEKTFVKKTGLLLD 155
Query: 82 TCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTM 141
F+ KL W++ NV + KG+ FGTIDT+LIW LTGG TD +NASRT+
Sbjct: 156 PYFSGTKLNWLLSNVKGAQVRAAKGELCFGTIDTFLIWRLTGGE---CFCTDATNASRTL 212
Query: 142 LMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKLGKGWPITGIPISGCLGDHHAAML 201
L N+ WD E L +P E LP+ + G IPI G GD AA +
Sbjct: 213 LYNIAENAWDDELTEVLRVPKEXLPEVKDCAADFGVTDPSLFGAAIPILGVAGDQQAATI 272
Query: 202 GQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIA 260
GQAC K G +KSTYGTG F LLNTG++ V+SK+ LL+T+A++L T YALEGS+ +A
Sbjct: 273 GQACFKPGXLKSTYGTGCFALLNTGKDXVRSKNRLLTTIAYRL--DGETTYALEGSIFVA 330
Query: 261 GAAVQWLRDSLGVISSASEIEELA-------------------------------LQVHK 289
GAAVQWLRD L VI +A + LA +
Sbjct: 331 GAAVQWLRDGLKVIKAAPDTGSLAESADPSQEVYLVPAFTGLGAPHWDPDARGAIFGXTR 390
Query: 290 QGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFE 349
ARA LE++C+Q +D+L++ KD G +LRVDG A+
Sbjct: 391 NTGPAEFARAALEAVCYQTRDLLEAXHKDWRRNG----NDTVLRVDGGXVAS-------- 438
Query: 350 KXXXXXXXXXXXXECRSADLLGSPVIRPADIETTXXXXXXXXXXXIGVFKEEEIFA-SGE 408
R +DLL +PV RP +ETT GV+ +E FA S
Sbjct: 439 ----------DWTXQRLSDLLDAPVDRPVILETTALGVAWLAGSRAGVWPNQEAFAKSWA 488
Query: 409 RTKTSTTFKPVLNEEFRKKKAESWCRAVER 438
R + F+P +E RK K + W AV+R
Sbjct: 489 RDR---RFEPHXDEATRKVKLKGWRSAVKR 515
>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|C Chain C, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
pdb|2W40|D Chain D, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Bound Glycerol
Length = 503
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/360 (36%), Positives = 193/360 (53%), Gaps = 48/360 (13%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGE-GIIWGKTHFLEAVGLPIS 81
+K IG+TNQRET ++W + TG PLYNAIVW+D R + E + + G +
Sbjct: 76 IKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFN 135
Query: 82 TCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTM 141
T F+A K+LW+++N +K+ I G A+ G I+TWLI+NLT G TDV+NASRT+
Sbjct: 136 TYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN----CYTDVTNASRTL 191
Query: 142 LMNLKTLDWDKPTLETLGIP-AEILPKTFSNSEIIGKL-GKGWP-ITGIPISGCLGDHHA 198
LM++ TL WD+ + I +LP+ SN G + + P IPI+GC+GD +
Sbjct: 192 LMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQS 251
Query: 199 AMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSV 257
A +GQA +GE K TYGTG F+L+NTGE+VV S L++T+ +K YALEGS+
Sbjct: 252 ACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSI 311
Query: 258 AIAGAAVQWLRDS--LGVISSASEIEE------------------------------LAL 285
AG+ V WL + + S AS+I E +
Sbjct: 312 GTAGSGVSWLLKNKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGM 371
Query: 286 QVHKQGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
+ + S HI RA+LE + FQ+ +++DSL D G+ + +LR DG + N +
Sbjct: 372 TFNTERS--HIVRALLEGIAFQLNEIVDSLTSDM---GI--EMLHVLRCDGGMTKNKPFM 424
>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
pdb|2W41|B Chain B, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase
With Adp
Length = 507
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/360 (36%), Positives = 193/360 (53%), Gaps = 48/360 (13%)
Query: 23 LKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGE-GIIWGKTHFLEAVGLPIS 81
+K IG+TNQRET ++W + TG PLYNAIVW+D R + E + + G +
Sbjct: 80 IKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFN 139
Query: 82 TCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTM 141
T F+A K+LW+++N +K+ I G A+ G I+TWLI+NLT G TDV+NASRT+
Sbjct: 140 TYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLTKGN----CYTDVTNASRTL 195
Query: 142 LMNLKTLDWDKPTLETLGIP-AEILPKTFSNSEIIGKL-GKGWP-ITGIPISGCLGDHHA 198
LM++ TL WD+ + I +LP+ SN G + + P IPI+GC+GD +
Sbjct: 196 LMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQS 255
Query: 199 AMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSV 257
A +GQA +GE K TYGTG F+L+NTGE+VV S L++T+ +K YALEGS+
Sbjct: 256 ACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSI 315
Query: 258 AIAGAAVQWLRDS--LGVISSASEIEE------------------------------LAL 285
AG+ V WL + + S AS+I E +
Sbjct: 316 GTAGSGVSWLLKNKLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGM 375
Query: 286 QVHKQGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345
+ + S HI RA+LE + FQ+ +++DSL D G+ + +LR DG + N +
Sbjct: 376 TFNTERS--HIVRALLEGIAFQLNEIVDSLTSDM---GI--EMLHVLRCDGGMTKNKPFM 428
>pdb|3GBT|A Chain A, Crystal Structure Of Gluconate Kinase From Lactobacillus
Acidophilus
pdb|3LL3|A Chain A, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
pdb|3LL3|B Chain B, The Crystal Structure Of Ligand Bound Xylulose Kinase From
Lactobacillus Acidophilus
Length = 504
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 28/236 (11%)
Query: 46 LYNAIVWMDARNSSEIGEGIIWG-KTHFLEAVGLPISTCFTAVKLLWMM-ENVDVVKEAI 103
L N+I W D S + + G G P KLLW+ + +V +A
Sbjct: 93 LTNSITWADNCAKSIVQDAKNRGFAQQIYRKTGXPXHPXAPIYKLLWLKNKKTEVFSQAQ 152
Query: 104 KKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAE 163
K + I ++I+ LTG + VTD + A+ T ++NLKTL WD+ L+ L I E
Sbjct: 153 K-----WIGIKEYIIFRLTGKL-----VTDTTXAAGTGILNLKTLTWDQELLDILKIKKE 202
Query: 164 ILPKTFSNSEIIGKLGKGWPITGIPISGCLGDHHAAMLGQACKKGEVKSTYGTGAF---- 219
LPK +++I +PI + LG + G + ST G A
Sbjct: 203 QLPKIAQPTKVI------FPIKTEYVKK-LGIDSDTKIILGASDGYL-STIGVNAIDSDH 254
Query: 220 ILLNTGE----EVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSL 271
LN G + + ++ + ++ P T+Y L G V G W R +L
Sbjct: 255 CALNVGTSGAIRTIVDQPKIDPSASYFCYPADKTHYLLGGPVNNGGIVFNWARQTL 310
>pdb|2ITM|A Chain A, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2ITM|B Chain B, Crystal Structure Of The E. Coli Xylulose Kinase Complexed
With Xylulose
pdb|2NLX|A Chain A, Crystal Structure Of The Apo E. Coli Xylulose Kinase
pdb|2NLX|B Chain B, Crystal Structure Of The Apo E. Coli Xylulose Kinase
Length = 484
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 32/191 (16%)
Query: 11 KATADGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIWGKT 70
KA D H++ +KA+G+ Q L L AI+W D R + E
Sbjct: 57 KALGDQHSLQD-VKALGIAGQMHGATLLDAQQRV-LRPAILWNDGRCAQECT-------- 106
Query: 71 HFLEA--------VGLPISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLT 122
LEA G + FTA KLLW+ + E ++ D + D +L +T
Sbjct: 107 -LLEARVPQSRVITGNLMMPGFTAPKLLWVQRHE---PEIFRQIDKVLLPKD-YLRLRMT 161
Query: 123 GGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKL---- 178
G +D+S+A+ TM +++ DW L+ + + +P + SEI G L
Sbjct: 162 GEF-----ASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEV 216
Query: 179 GKGWPITGIPI 189
K W + +P+
Sbjct: 217 AKAWGMATVPV 227
>pdb|3I8B|A Chain A, The Crystal Structure Of Xylulose Kinase From
Bifidobacterium Adolescentis
Length = 515
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 87/208 (41%), Gaps = 32/208 (15%)
Query: 37 LWSKSTGCPLYNAIVWMDARNSSEIGEG---IIWGKTHFLEAVGLPISTCFTAVKLLWMM 93
LW+ ++ P A++ ++ GE I GK +++AVG +T K+ W+
Sbjct: 92 LWNDTSSAPQAAALIEKLGAAPAQDGEPEDPIARGKQRWVKAVGSSPVASYTLTKVAWVA 151
Query: 94 ENVDVVKEAIKKGDALFGTIDTWLIWNLTG------GVNGGLHV--TDVSNASRTMLMNL 145
EN E +KK A+ D WL W + G G + L TD S+AS T+ +
Sbjct: 152 EN---EPENVKKIAAICLPHD-WLSWRIAGYGPVAEGEDAHLEALFTDRSDASGTIYYDA 207
Query: 146 KTLDWDKPTLETLGIPAEILPKTFSNSEII---GKLGK--GWPITGIPI-------SGCL 193
+ ++ + + + AE S++E I LG P+ P GCL
Sbjct: 208 ASNEYRRDLIAXVLEAAEGAKAAQSHAEAIVLPTVLGPRDAAPVKADPAIAGKNVEGGCL 267
Query: 194 -----GDHHAAMLGQACKKGEVKSTYGT 216
GD+ A LG G+V + GT
Sbjct: 268 LAPGGGDNAXASLGLGXAVGDVSISLGT 295
>pdb|3HZ6|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
pdb|3KZB|A Chain A, Crystal Structure Of Xylulokinase From Chromobacterium
Violaceum
Length = 511
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 45 PLYNAIVWMDARNSSEIGE-GIIWGKTHFLEAVGLPISTCFTAVKLLWMMENVDVVKEAI 103
PL+ A+++ D R E E G + A+ P + KL++ + +
Sbjct: 95 PLHRAVLYSDKRPLKEAEEINARHGADNLWSALENPXTAASILPKLVFWRASFPQAFGRL 154
Query: 104 KKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAE 163
+ + G D +++ LTG H TD +NAS T L K W L G +
Sbjct: 155 RH--VVLGAKD-YVVLRLTG-----RHATDRTNASTTGLYRPKDDAWHVELLADYGFSLD 206
Query: 164 ILPKTFSNSEIIGKLGK------GWPITGIPISGCLGDHHAAMLG 202
+ P+ E +G + G+ ++G P+ LGD AA LG
Sbjct: 207 LXPRLLEPGEQVGGVSALAARQTGF-VSGTPVLCGLGDAGAATLG 250
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 77/211 (36%), Gaps = 40/211 (18%)
Query: 72 FLEAVGLPISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLI--------WNLTG 123
FL G ++ KL W+ + V AI + I+ L W L G
Sbjct: 126 FLARTGNGVTQQLVTAKLRWIERHEPAVFGAIATVCGSYDYINXLLTGERVVDRNWALEG 185
Query: 124 GVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPAEILPKTFSNSEIIGKLGK--- 180
G + AS T+ +L L IP +P ++G +
Sbjct: 186 GF--------IDLASGTVEADLVAL---------AHIPPSAVPPAHPTHRVLGAVTAEAA 228
Query: 181 ---GWPITGIPISGCLGDHHAAMLGQA-CKKGEVKSTYGTGAFILLNTGEEVVKSKHELL 236
G P TG+P+ G DH A+ L + G+V +G I++ + KS L
Sbjct: 229 ALTGLP-TGLPVYGGAADHIASALAAGITRPGDVLLKFGGAGDIIVASA--TAKSDPRLY 285
Query: 237 STLAFKLGPKAPTNYALEGSVAIAGAAVQWL 267
L + L P YA G A G+A+ WL
Sbjct: 286 --LDYHL---VPGLYAPNGCXAATGSALNWL 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,205,527
Number of Sequences: 62578
Number of extensions: 478357
Number of successful extensions: 1170
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 41
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)