Query 036892
Match_columns 447
No_of_seqs 133 out of 1208
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:28:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0554 GlpK Glycerol kinase [ 100.0 5E-77 1.1E-81 602.2 33.8 407 3-444 59-498 (499)
2 PLN02295 glycerol kinase 100.0 1.2E-72 2.6E-77 600.5 40.5 416 2-447 53-512 (512)
3 PTZ00294 glycerol kinase-like 100.0 1.7E-72 3.7E-77 598.3 39.5 410 2-445 55-504 (504)
4 PRK00047 glpK glycerol kinase; 100.0 6.7E-72 1.4E-76 593.0 38.5 405 3-442 55-497 (498)
5 TIGR01314 gntK_FGGY gluconate 100.0 7.3E-72 1.6E-76 593.7 37.9 395 3-442 50-496 (505)
6 TIGR01311 glycerol_kin glycero 100.0 1.1E-70 2.4E-75 583.0 38.8 407 4-442 52-493 (493)
7 PRK15027 xylulokinase; Provisi 100.0 2.8E-70 6.1E-75 578.7 37.3 392 3-442 50-482 (484)
8 PRK10939 autoinducer-2 (AI-2) 100.0 6E-70 1.3E-74 580.9 35.2 398 4-445 56-508 (520)
9 TIGR01312 XylB D-xylulose kina 100.0 3.4E-68 7.4E-73 561.8 38.1 391 3-436 48-480 (481)
10 PRK10331 L-fuculokinase; Provi 100.0 3.9E-68 8.4E-73 560.5 33.9 378 3-426 54-467 (470)
11 TIGR01315 5C_CHO_kinase FGGY-f 100.0 3.3E-67 7.2E-72 561.9 32.4 393 4-442 51-540 (541)
12 TIGR01234 L-ribulokinase L-rib 100.0 1.5E-66 3.2E-71 556.6 36.3 397 4-443 64-534 (536)
13 TIGR02628 fuculo_kin_coli L-fu 100.0 1.1E-66 2.5E-71 548.6 34.1 376 3-419 53-465 (465)
14 PRK04123 ribulokinase; Provisi 100.0 8.7E-66 1.9E-70 552.1 36.4 396 3-439 64-533 (548)
15 PRK10640 rhaB rhamnulokinase; 100.0 4.7E-66 1E-70 544.4 33.2 387 2-438 39-466 (471)
16 COG1070 XylB Sugar (pentulose 100.0 1.2E-64 2.6E-69 537.6 36.0 397 4-443 56-498 (502)
17 TIGR02627 rhamnulo_kin rhamnul 100.0 5.6E-62 1.2E-66 511.6 31.6 356 2-406 51-446 (454)
18 PLN02669 xylulokinase 100.0 3.5E-61 7.6E-66 515.7 37.8 349 3-395 71-494 (556)
19 KOG2517 Ribulose kinase and re 100.0 2.8E-59 6E-64 482.9 27.3 414 2-445 60-512 (516)
20 COG1069 AraB Ribulose kinase [ 100.0 1E-52 2.2E-57 430.8 30.9 393 2-441 57-527 (544)
21 PF00370 FGGY_N: FGGY family o 100.0 9.1E-39 2E-43 309.2 13.1 187 4-202 51-245 (245)
22 KOG2531 Sugar (pentulose and h 100.0 3.4E-36 7.4E-41 301.2 25.7 394 2-438 70-543 (545)
23 PF02782 FGGY_C: FGGY family o 99.9 1.5E-24 3.2E-29 202.7 15.2 158 210-395 1-198 (198)
24 TIGR00241 CoA_E_activ CoA-subs 98.5 4.9E-07 1.1E-11 88.0 10.5 100 259-390 125-248 (248)
25 TIGR03192 benz_CoA_bzdQ benzoy 98.0 4.6E-05 1E-09 75.5 11.2 107 256-393 157-288 (293)
26 TIGR03286 methan_mark_15 putat 97.9 0.00012 2.5E-09 75.5 11.6 105 257-391 273-401 (404)
27 COG1924 Activator of 2-hydroxy 97.8 0.00018 4E-09 72.7 11.4 115 248-392 251-389 (396)
28 TIGR02259 benz_CoA_red_A benzo 97.8 0.00016 3.4E-09 74.0 10.7 106 256-391 299-432 (432)
29 PRK13317 pantothenate kinase; 97.7 0.0009 1.9E-08 66.3 13.7 75 292-392 194-273 (277)
30 TIGR02261 benz_CoA_red_D benzo 97.6 0.00046 9.9E-09 67.6 10.4 106 256-391 129-262 (262)
31 PRK15080 ethanolamine utilizat 96.7 0.0095 2.1E-07 58.7 9.9 101 258-390 164-266 (267)
32 TIGR02529 EutJ ethanolamine ut 96.6 0.01 2.2E-07 57.6 8.9 66 294-389 172-238 (239)
33 CHL00094 dnaK heat shock prote 96.3 0.012 2.6E-07 64.9 8.2 84 295-400 294-383 (621)
34 PRK13410 molecular chaperone D 96.2 0.015 3.3E-07 64.6 8.8 82 296-398 295-381 (668)
35 TIGR00555 panK_eukar pantothen 96.0 0.11 2.3E-06 51.6 12.4 72 292-389 202-278 (279)
36 PTZ00186 heat shock 70 kDa pre 95.5 0.042 9.1E-07 61.0 8.4 53 327-397 352-405 (657)
37 PRK00290 dnaK molecular chaper 95.3 0.049 1.1E-06 60.2 8.0 52 328-397 326-378 (627)
38 PF00012 HSP70: Hsp70 protein; 95.1 0.058 1.3E-06 58.9 7.7 50 329-396 329-379 (602)
39 TIGR02350 prok_dnaK chaperone 95.0 0.07 1.5E-06 58.5 8.1 51 329-397 325-376 (595)
40 PRK05183 hscA chaperone protei 95.0 0.068 1.5E-06 58.9 7.9 51 328-396 328-379 (616)
41 PLN03184 chloroplast Hsp70; Pr 94.7 0.097 2.1E-06 58.3 8.3 53 327-397 364-417 (673)
42 PRK13928 rod shape-determining 94.6 0.056 1.2E-06 54.8 5.7 76 295-393 246-323 (336)
43 TIGR01991 HscA Fe-S protein as 94.6 0.099 2.1E-06 57.5 8.0 51 328-396 312-363 (599)
44 PF03630 Fumble: Fumble ; Int 94.5 0.62 1.3E-05 47.6 12.8 73 292-390 259-339 (341)
45 PLN02920 pantothenate kinase 1 94.3 0.94 2E-05 46.9 13.6 46 292-345 269-315 (398)
46 PRK01433 hscA chaperone protei 94.2 0.12 2.6E-06 56.7 7.6 50 329-396 309-359 (595)
47 PTZ00400 DnaK-type molecular c 94.1 0.099 2.1E-06 58.2 6.8 52 328-397 367-419 (663)
48 PRK13411 molecular chaperone D 93.9 0.14 3E-06 56.9 7.3 52 328-397 327-380 (653)
49 PRK11678 putative chaperone; P 93.7 0.3 6.4E-06 51.9 9.1 77 292-393 370-447 (450)
50 PRK13927 rod shape-determining 93.6 0.13 2.8E-06 52.0 5.9 45 331-393 279-324 (334)
51 PF03702 UPF0075: Uncharacteri 93.4 0.38 8.2E-06 49.6 9.0 84 292-403 258-348 (364)
52 PRK09585 anmK anhydro-N-acetyl 93.3 0.27 5.9E-06 50.6 7.7 75 292-394 260-339 (365)
53 PTZ00009 heat shock 70 kDa pro 93.2 0.21 4.5E-06 55.6 7.2 50 329-396 333-384 (653)
54 PF02543 CmcH_NodU: Carbamoylt 93.2 0.48 1E-05 48.8 9.4 78 292-397 134-217 (360)
55 PRK13930 rod shape-determining 93.0 0.16 3.5E-06 51.2 5.6 44 331-392 283-327 (335)
56 PF11104 PilM_2: Type IV pilus 92.8 1 2.2E-05 45.7 11.2 96 257-378 208-306 (340)
57 TIGR00904 mreB cell shape dete 92.4 0.22 4.7E-06 50.4 5.6 44 331-392 282-326 (333)
58 PRK13310 N-acetyl-D-glucosamin 92.1 4.8 0.0001 39.9 14.8 42 186-228 97-144 (303)
59 PRK14878 UGMP family protein; 92.0 0.62 1.3E-05 47.2 8.2 74 292-392 213-289 (323)
60 PRK09604 UGMP family protein; 91.8 0.58 1.3E-05 47.6 7.8 81 292-398 226-313 (332)
61 PRK09557 fructokinase; Reviewe 91.1 9.1 0.0002 37.9 15.5 42 186-228 97-144 (301)
62 COG0533 QRI7 Metal-dependent p 91.0 2.8 6.2E-05 42.6 11.5 77 292-395 233-312 (342)
63 PF01869 BcrAD_BadFG: BadF/Bad 90.6 0.98 2.1E-05 44.2 8.0 78 295-391 193-271 (271)
64 KOG0103 Molecular chaperones H 90.3 0.57 1.2E-05 51.2 6.3 75 294-393 306-381 (727)
65 PRK13929 rod-share determining 90.3 0.56 1.2E-05 47.7 6.0 44 329-390 278-323 (335)
66 TIGR00143 hypF [NiFe] hydrogen 90.1 0.58 1.3E-05 52.4 6.4 75 292-392 630-711 (711)
67 COG2377 Predicted molecular ch 89.5 1.4 3.1E-05 45.0 8.0 57 292-376 264-321 (371)
68 COG0443 DnaK Molecular chapero 89.4 1.1 2.4E-05 49.1 7.9 182 185-399 146-363 (579)
69 TIGR03723 bact_gcp putative gl 89.2 1 2.2E-05 45.5 6.8 62 292-379 231-295 (314)
70 KOG1794 N-Acetylglucosamine ki 88.9 21 0.00047 35.6 15.3 85 294-397 234-320 (336)
71 TIGR00744 ROK_glcA_fam ROK fam 87.9 16 0.00034 36.4 14.5 42 186-228 98-145 (318)
72 PLN02902 pantothenate kinase 87.4 11 0.00024 42.9 13.9 46 292-345 318-364 (876)
73 COG2192 Predicted carbamoyl tr 87.1 1.9 4.1E-05 46.3 7.4 78 292-397 260-339 (555)
74 PRK09472 ftsA cell division pr 86.9 2.2 4.8E-05 44.8 7.9 64 293-377 293-359 (420)
75 PRK09605 bifunctional UGMP fam 86.7 2.5 5.3E-05 45.8 8.4 76 292-393 217-299 (535)
76 PF07318 DUF1464: Protein of u 86.2 1.5 3.3E-05 44.6 6.0 84 296-404 239-327 (343)
77 TIGR03722 arch_KAE1 universal 86.1 2.9 6.3E-05 42.3 8.1 62 292-379 214-278 (322)
78 PRK05082 N-acetylmannosamine k 86.0 29 0.00064 34.1 15.1 24 23-47 3-26 (291)
79 KOG0100 Molecular chaperones G 85.8 1.8 3.9E-05 44.8 6.2 83 293-397 326-415 (663)
80 PRK14101 bifunctional glucokin 85.1 18 0.00039 40.1 14.3 61 329-396 270-333 (638)
81 PTZ00340 O-sialoglycoprotein e 83.6 5.4 0.00012 40.9 8.6 76 293-395 236-314 (345)
82 PF06723 MreB_Mbl: MreB/Mbl pr 83.4 1.3 2.8E-05 45.1 4.0 44 330-391 275-319 (326)
83 PRK03011 butyrate kinase; Prov 82.9 19 0.00041 37.1 12.4 46 296-347 269-314 (358)
84 TIGR01175 pilM type IV pilus a 82.7 2.5 5.4E-05 42.8 5.9 64 292-378 251-314 (348)
85 KOG2201 Pantothenate kinase Pa 81.2 14 0.00029 37.5 10.1 46 292-345 276-322 (371)
86 TIGR00329 gcp_kae1 metallohydr 79.6 4.2 9E-05 40.8 6.1 62 292-379 230-294 (305)
87 PRK09698 D-allose kinase; Prov 78.1 71 0.0015 31.5 14.5 24 23-47 6-29 (302)
88 PTZ00297 pantothenate kinase; 76.4 41 0.00088 41.1 14.0 74 292-391 1363-1444(1452)
89 COG1940 NagC Transcriptional r 76.2 85 0.0018 31.1 14.7 42 186-228 107-154 (314)
90 KOG0101 Molecular chaperones H 74.6 6.5 0.00014 43.1 6.2 76 294-398 311-388 (620)
91 COG0068 HypF Hydrogenase matur 73.0 12 0.00027 41.4 7.8 75 292-392 665-746 (750)
92 COG3426 Butyrate kinase [Energ 72.6 8 0.00017 38.4 5.7 63 295-381 269-334 (358)
93 COG1521 Pantothenate kinase ty 69.9 19 0.00042 35.2 7.7 116 194-340 107-224 (251)
94 TIGR01174 ftsA cell division p 69.5 11 0.00024 38.7 6.4 32 329-378 314-346 (371)
95 TIGR03281 methan_mark_12 putat 69.3 11 0.00024 37.9 5.9 67 296-392 241-310 (326)
96 PRK00976 hypothetical protein; 68.9 21 0.00045 36.3 7.9 70 294-394 241-312 (326)
97 PRK13322 pantothenate kinase; 65.5 33 0.00071 33.4 8.4 43 290-339 175-217 (246)
98 PRK13327 pantothenate kinase; 65.2 69 0.0015 31.1 10.5 142 194-395 99-240 (242)
99 COG5146 PanK Pantothenate kina 65.0 44 0.00095 32.6 8.8 46 292-345 249-294 (342)
100 KOG0102 Molecular chaperones m 64.5 7.1 0.00015 42.0 3.8 70 309-400 338-408 (640)
101 PRK13329 pantothenate kinase; 64.3 1E+02 0.0022 30.1 11.6 70 290-392 176-245 (249)
102 PRK13321 pantothenate kinase; 63.2 36 0.00077 33.1 8.3 42 290-338 183-224 (256)
103 TIGR00671 baf pantothenate kin 63.2 32 0.00068 33.4 7.8 118 193-341 100-219 (243)
104 PRK13318 pantothenate kinase; 62.3 42 0.00091 32.6 8.6 43 290-339 183-225 (258)
105 PRK00292 glk glucokinase; Prov 61.3 28 0.00061 34.8 7.4 56 329-392 254-314 (316)
106 TIGR02707 butyr_kinase butyrat 58.2 1.9E+02 0.0042 29.7 12.9 46 296-347 267-312 (351)
107 PRK13328 pantothenate kinase; 57.6 77 0.0017 31.0 9.5 70 290-392 183-252 (255)
108 PF03727 Hexokinase_2: Hexokin 56.8 29 0.00063 33.6 6.3 31 365-395 209-242 (243)
109 PF01968 Hydantoinase_A: Hydan 52.1 23 0.00049 35.3 4.8 72 292-389 208-283 (290)
110 PRK13331 pantothenate kinase; 49.0 39 0.00084 33.1 5.8 41 291-339 174-214 (251)
111 PTZ00107 hexokinase; Provision 47.9 66 0.0014 34.4 7.8 52 330-395 406-461 (464)
112 KOG1369 Hexokinase [Carbohydra 47.6 22 0.00049 37.9 4.1 85 294-396 377-469 (474)
113 TIGR00241 CoA_E_activ CoA-subs 47.2 19 0.00042 34.7 3.4 32 3-38 39-70 (248)
114 KOG0104 Molecular chaperones G 45.5 13 0.00029 41.4 2.1 81 293-395 328-415 (902)
115 PF00871 Acetate_kinase: Aceto 43.5 80 0.0017 32.9 7.4 43 297-345 295-337 (388)
116 PRK12408 glucokinase; Provisio 42.4 1E+02 0.0022 31.3 7.9 56 329-392 272-332 (336)
117 COG2971 Predicted N-acetylgluc 42.4 3.7E+02 0.0081 27.1 12.9 68 298-396 226-294 (301)
118 COG4972 PilM Tfp pilus assembl 36.6 1.1E+02 0.0025 31.2 6.9 65 291-378 255-319 (354)
119 PLN02405 hexokinase 36.5 1.4E+02 0.003 32.3 8.0 51 331-395 435-490 (497)
120 PLN02914 hexokinase 33.8 1.8E+02 0.0038 31.5 8.3 35 187-221 222-258 (490)
121 TIGR00749 glk glucokinase, pro 32.9 68 0.0015 32.1 4.9 50 331-388 263-316 (316)
122 KOG2708 Predicted metalloprote 30.8 4.8E+02 0.01 25.5 9.7 47 292-347 226-272 (336)
123 PRK13325 bifunctional biotin-- 30.3 2E+02 0.0044 31.8 8.3 115 193-339 433-550 (592)
124 PF00814 Peptidase_M22: Glycop 28.1 1.9E+02 0.0041 28.4 6.9 45 294-347 195-239 (268)
125 PLN02666 5-oxoprolinase 28.1 1.9E+02 0.0042 35.0 8.1 75 292-390 455-531 (1275)
126 PRK13326 pantothenate kinase; 27.2 1.1E+02 0.0025 30.0 5.2 42 291-339 186-227 (262)
127 TIGR00315 cdhB CO dehydrogenas 25.9 50 0.0011 30.1 2.2 28 413-440 133-160 (162)
128 COG1077 MreB Actin-like ATPase 25.6 86 0.0019 31.9 4.0 70 295-387 254-325 (342)
129 PLN02596 hexokinase-like 25.1 3.5E+02 0.0076 29.2 8.7 85 293-395 391-485 (490)
130 COG5012 Predicted cobalamin bi 24.5 1.5E+02 0.0033 28.5 5.3 65 271-347 138-204 (227)
131 PRK12379 propionate/acetate ki 23.2 8.9E+02 0.019 25.4 12.8 41 298-345 294-334 (396)
132 TIGR00016 ackA acetate kinase. 22.9 9.1E+02 0.02 25.4 13.8 44 298-347 303-347 (404)
133 PTZ00288 glucokinase 1; Provis 21.8 2.8E+02 0.0061 29.1 7.1 29 367-395 362-392 (405)
134 KOG2707 Predicted metalloprote 21.7 2.1E+02 0.0044 29.6 5.8 48 292-347 272-323 (405)
135 PRK12440 acetate kinase; Revie 21.1 9.7E+02 0.021 25.1 12.8 42 297-345 296-338 (397)
136 PLN02362 hexokinase 20.8 4E+02 0.0087 28.9 8.2 35 187-221 222-258 (509)
No 1
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=100.00 E-value=5e-77 Score=602.16 Aligned_cols=407 Identities=48% Similarity=0.778 Sum_probs=375.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHccccC-ChHHHHHHhCCCCC
Q 036892 3 VCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIW-GKTHFLEAVGLPIS 81 (447)
Q Consensus 3 ~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~~-~~~~~~~~tG~~~~ 81 (447)
.++++++.+ .++.+.+ |.+||||+|++|+|+||+.+|+||+|+|.|+|+|+.+.++++... ..+.+.+.||+++.
T Consensus 59 ~~l~~a~~~---~~i~~~~-iaaIGITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~g~~~~i~~kTGL~~d 134 (499)
T COG0554 59 SVLKEALAK---AGIKPGE-IAAIGITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEELKADGYEERIREKTGLVLD 134 (499)
T ss_pred HHHHHHHHH---cCCCccc-eEEEEeeccceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhcchhhhhhhhcCCccC
Confidence 455555555 4788898 999999999999999999999999999999999999999977533 45667789999999
Q ss_pred cccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcCCC
Q 036892 82 TCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP 161 (447)
Q Consensus 82 ~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lgi~ 161 (447)
|.|+..|+.|+.+|.|...+++++|.++|++++.||+|+|||+ ..++||+||||+|+|||+++.+||+++|+.||||
T Consensus 135 pYFSatKi~WiLdnv~g~r~~ae~Gel~fGTiDtWLiw~LTgg---~~h~TD~sNASRT~L~ni~~l~WD~elL~il~Ip 211 (499)
T COG0554 135 PYFSATKIKWILDNVPGARERAEKGELLFGTIDTWLIWKLTGG---KVHVTDYSNASRTMLFNIHSLEWDDELLELLGIP 211 (499)
T ss_pred CCccchhhhHHHhhChhhhhHhhcCCeEEecchhhheeeccCC---ceeccccchhHHHhcccccccCCCHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999995 5889999999999999999999999999999999
Q ss_pred CCCCCCcccCCceeeeeccCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccCCCceeeec
Q 036892 162 AEILPKTFSNSEIIGKLGKGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLA 240 (447)
Q Consensus 162 ~~~lP~i~~~g~~iG~l~~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~~~~~~ 240 (447)
+.+||++.++.++.|.+..+.+...+||....|||+||.+|.+| +||+++.+.||++++.++++++++.++++++.+++
T Consensus 212 ~~~LPev~~ss~~~G~t~~~~~g~~vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa 291 (499)
T COG0554 212 RSMLPEVRPSSEIYGVTGIGFLGAEVPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIA 291 (499)
T ss_pred hHhCccccccccccccccccccCCceeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCccccCCCCceeEEE
Confidence 99999999999999999765455789999999999999999999 99999999999999999999888888999999999
Q ss_pred cccCCCCCCceeecccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC-----------------------------
Q 036892 241 FKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVISSASEIEELALQVHKQG----------------------------- 291 (447)
Q Consensus 241 ~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~g----------------------------- 291 (447)
|.++. +-.|.+||++..+|.+++||+|.+++.++..+.+.+|.++++++
T Consensus 292 ~~l~g--k~~YALEGsif~aGaavqWLrd~L~~i~~a~~~e~~A~~~~~~~gVy~VPAFtGLgAPyWd~~aRGai~Gltr 369 (499)
T COG0554 292 WGLDG--KVTYALEGSIFVAGAAVQWLRDGLGLIDDASDSEELAESVEDNGGVYFVPAFTGLGAPYWDSDARGAIFGLTR 369 (499)
T ss_pred eccCC--eEEEEEecceeehhhHHHHHHHhcCccCchhHHHHHHhccCCCCceEEEcccccCCCCCcCcccceeEEeeCC
Confidence 98742 45899999999999999999999998888888999999887642
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhc
Q 036892 292 --SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADL 369 (447)
Q Consensus 292 --~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Adv 369 (447)
+++||+||++|+|||+.+++++.|+++.+.+ +++++|.||.++|+++| | +.||+
T Consensus 370 gt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~------~~~LrvDGG~s~n~~lm-Q-----------------fqADi 425 (499)
T COG0554 370 GTTKAHIARATLESIAYQTRDVLEAMEKDSGIK------LTRLRVDGGASRNNFLM-Q-----------------FQADI 425 (499)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------ceeEEEcCccccchhHH-H-----------------HHHHH
Confidence 8999999999999999999999999998877 89999999999999999 9 99999
Q ss_pred cCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccccCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhhhhc
Q 036892 370 LGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERTKTSTTFKPVLNEEFRKKKAESWCRAVERIFNLAD 444 (447)
Q Consensus 370 l~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~~~ 444 (447)
+|.||+++...|+||+|||++|+.++|.++|.+|..+.+. ..++|+|..+..++.++|..|++++++...|.+
T Consensus 426 lg~~V~Rp~~~EtTAlGaA~lAGla~G~w~~~~el~~~~~--~~~~f~p~m~~~~r~~~y~~W~~AV~rs~~~~~ 498 (499)
T COG0554 426 LGVPVERPVVLETTALGAAYLAGLAVGFWKDLDELAELWP--LDKEFEPGMDEEEREELYAGWKKAVKRSLGWRK 498 (499)
T ss_pred hCCeeeccccchhhHHHHHHHHhhhhCcCCCHHHHHhhhc--ccceeCCCCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999965553 478999999988888999999999999888864
No 2
>PLN02295 glycerol kinase
Probab=100.00 E-value=1.2e-72 Score=600.45 Aligned_cols=416 Identities=71% Similarity=1.114 Sum_probs=350.1
Q ss_pred HHHHHHHHHHHHhCCCCCCC---CeeEEEEcCcccceEEE-eCCCCcccccccccccCCcHHHHHcccc-C-C-hHHHHH
Q 036892 2 RVCMAKALDKATADGHNVDT---GLKAIGLTNQRETTVLW-SKSTGCPLYNAIVWMDARNSSEIGEGII-W-G-KTHFLE 74 (447)
Q Consensus 2 ~~~i~~~~~~~~~~~~~~~~---~I~aI~vs~q~~~~v~v-D~~~g~pl~~~i~W~D~R~~~~~~~~~~-~-~-~~~~~~ 74 (447)
|.||+++++++ +..+++ +|.+||+|+|++++++| |+ +|+||+|+|+|+|.|+.++++++.. . . .+.+++
T Consensus 53 ~~~i~~~~~~~---~~~~~~i~~~i~aIg~s~q~~~~v~~dd~-~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~~ 128 (512)
T PLN02295 53 LTCIAKALEKA---AAKGHNVDSGLKAIGITNQRETTVAWSKS-TGRPLYNAIVWMDSRTSSICRRLEKELSGGRKHFVE 128 (512)
T ss_pred HHHHHHHHHHc---CCCccccccceEEEEEecCcceEEEEECC-CCCCcccceeccccchHHHHHHHHhhccchhHHHHH
Confidence 45666666654 333332 17999999999999999 57 9999999999999999999986642 1 2 345679
Q ss_pred HhCCCCCcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHH
Q 036892 75 AVGLPISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPT 154 (447)
Q Consensus 75 ~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~ 154 (447)
+||+++++.++++||+|+++|+|++|++++++..+|++++|||.|+|||..++.++++|+|+|++|++||+++++|++++
T Consensus 129 ~tG~~~~~~~~~~kl~Wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~td~s~As~t~l~D~~~~~W~~el 208 (512)
T PLN02295 129 TCGLPISTYFSATKLLWLLENVDAVKEAVKSGDALFGTIDSWLIWNLTGGASGGVHVTDVTNASRTMLMNLKTLDWDKPT 208 (512)
T ss_pred hhCCcCCcccHHHHHHHHHhcCHHHHHhhhcCceEEEcHHHHHHHHhhCCCCCCeEEeeHHHhHHhhccCcccCcCCHHH
Confidence 99999999999999999999999999888655557999999999999993111147999999999999999999999999
Q ss_pred HhhcCCCCCCCCCcccCCceeeeeccCCCC-CCCcEEeccchhHHhhhcCCCCCCcEEEEecccceeccccCccccccCC
Q 036892 155 LETLGIPAEILPKTFSNSEIIGKLGKGWPI-TGIPISGCLGDHHAAMLGQACKKGEVKSTYGTGAFILLNTGEEVVKSKH 233 (447)
Q Consensus 155 l~~lgi~~~~lP~i~~~g~~iG~l~~g~l~-~g~pV~~g~gD~~aa~lg~g~~~g~~~~s~GTs~~i~~~~~~~~~~~~~ 233 (447)
++.+||++++||+++++++++|+|+.. .. .|+||++|++|++|+++|+|+++|++.+++|||+++.+.+...+..++.
T Consensus 209 l~~~gi~~~~lP~l~~~~~~~G~v~~~-~a~~g~pV~~g~~D~~aa~~G~G~~~g~~~~~~GTs~~i~~~~~~~~~~~~~ 287 (512)
T PLN02295 209 LEALGIPAEILPKIVSNSEVIGTIAKG-WPLAGVPIAGCLGDQHAAMLGQRCRPGEAKSTYGTGCFILLNTGEEVVPSKH 287 (512)
T ss_pred HHHcCCCHHHCCCcccCccceeccccc-cccCCCcEEEEechHHHHHhhCcCCCCCeEEEEcccceeeeecCCccccCCC
Confidence 999999999999999999999999877 44 4999999999999999999998899999999998865555333344444
Q ss_pred CceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-C---------------------
Q 036892 234 ELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVISSASEIEELALQVHKQ-G--------------------- 291 (447)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~-g--------------------- 291 (447)
+....++|..++..|+.|.++|+++++|.+++|+++.++...+++++++++.+++.. +
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~f~P~l~G~r~P~~~~~arg 367 (512)
T PLN02295 288 GLLTTVAYKLGPDAPTNYALEGSVAIAGAAVQWLRDNLGIIKSASEIEALAATVDDTGGVYFVPAFSGLFAPRWRDDARG 367 (512)
T ss_pred CceEEEEEEecCCCCceEEEechhhhhHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCCceEEeCcccCCCCCcCCCCCCE
Confidence 555556665443347899999999999999999999887544577788877665421 1
Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cccccccCCccEEEEeccccccHHHHHhhhhhcccCcc
Q 036892 292 ---------SQLHIARAVLESMCFQVKDVLDSLQKDA-----VEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFL 357 (447)
Q Consensus 292 ---------~~~~l~rAvlEgia~~~~~~l~~l~~~~-----g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~ 357 (447)
+++||+|||+|||+|.+|++++.|++.. +.+ +++|+++||+++|++|+ |
T Consensus 368 ~~~Gl~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~------~~~i~~~GGga~s~~w~-Q---------- 430 (512)
T PLN02295 368 VCVGITRFTNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKG------LFLLRVDGGATANNLLM-Q---------- 430 (512)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCC------cceEEEeccchhCHHHH-H----------
Confidence 7999999999999999999999998641 335 78999999999999999 9
Q ss_pred ccccchhhhhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccccCCCcEEeCCCCHHHHHHHHHHHHHHHH
Q 036892 358 SFSYFECRSADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERTKTSTTFKPVLNEEFRKKKAESWCRAVE 437 (447)
Q Consensus 358 ~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~ 437 (447)
|+||++|+||+++...|++++|||++|++++|.|++.+++...+++ ..++|+|+++++++.++|++|+++|+
T Consensus 431 -------i~ADv~g~pV~~~~~~e~~alGaA~~A~~~~G~~~~~~~~~~~~~~-~~~~~~P~~~~~~y~~~y~~~~~~~~ 502 (512)
T PLN02295 431 -------IQADLLGSPVVRPADIETTALGAAYAAGLAVGLWTEEEIFASEKWK-NTTTFRPKLDEEERAKRYASWCKAVE 502 (512)
T ss_pred -------HHHHhcCCceEecCccccHHHHHHHHHHhhcCcCCCHHHHHHhccC-CCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877556766 57899999999993367999999999
Q ss_pred HHhhhhccCC
Q 036892 438 RIFNLADLSL 447 (447)
Q Consensus 438 ~~~~~~~~~~ 447 (447)
+...|.++|+
T Consensus 503 ~~~~~~~~~~ 512 (512)
T PLN02295 503 RSFDLADLSI 512 (512)
T ss_pred HHhcchhcCC
Confidence 9999988874
No 3
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=100.00 E-value=1.7e-72 Score=598.30 Aligned_cols=410 Identities=51% Similarity=0.861 Sum_probs=350.1
Q ss_pred HHHHHHHHHHHHhCCCCCC--CCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHcccc-CCh-HHHHHHhC
Q 036892 2 RVCMAKALDKATADGHNVD--TGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGII-WGK-THFLEAVG 77 (447)
Q Consensus 2 ~~~i~~~~~~~~~~~~~~~--~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~-~~~-~~~~~~tG 77 (447)
|++++++++++ +..++ + |++||+|+||+++|+||+++|+||+|+|+|+|.|+.++++++.. .+. +.+++.||
T Consensus 55 ~~~l~~~~~~~---~~~~~~~~-I~aIgis~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~~tG 130 (504)
T PTZ00294 55 YKCMNEAIKKL---REKGPSFK-IKAIGITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNELTKKYGGSNFFQKITG 130 (504)
T ss_pred HHHHHHHHHHc---CCCCccCc-eEEEEeecCcceEEEEECCCCCCcccceeecchhhHHHHHHHHhhcCcchHHHHhhC
Confidence 34455555443 33444 7 99999999999999998636999999999999999999986542 233 56779999
Q ss_pred CCCCcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhh
Q 036892 78 LPISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLET 157 (447)
Q Consensus 78 ~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~ 157 (447)
+++++.++++||+|+++|+|++|++++++..+|++++|||.|+|||+ .++++|+|+|++|++||+++++|++++++.
T Consensus 131 ~~~~~~~~~~kl~wl~~~~P~~~~~~~~~~~~~~~~~dyl~~~LTG~---~~~~~d~s~As~tgl~D~~~~~W~~~ll~~ 207 (504)
T PTZ00294 131 LPISTYFSAFKIRWMLENVPAVKDAVKEGTLLFGTIDTWLIWNLTGG---KSHVTDVTNASRTFLMNIKTLKWDEELLNK 207 (504)
T ss_pred CcCCccchHHHHHHHHhcCHHHHHhhhcCCeEEEcHHHHHHHHhcCC---ceEEEEhhhhHHhhccCcccCccCHHHHHH
Confidence 99999999999999999999999988765566899999999999983 258999999999999999999999999999
Q ss_pred cCCCCCCCCCcccCCceeeeec---cCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccCC
Q 036892 158 LGIPAEILPKTFSNSEIIGKLG---KGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKH 233 (447)
Q Consensus 158 lgi~~~~lP~i~~~g~~iG~l~---~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~~ 233 (447)
+||++++||+++++++++|+|+ .+ +++|+||++|++|++|+++|+|+ ++|++.+++|||+++.+++++.+..++.
T Consensus 208 ~gi~~~~LP~v~~~~~~~G~l~~~~~~-~~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~ 286 (504)
T PTZ00294 208 FGIPKETLPEIKSSSENFGTISGEAVP-LLEGVPITGCIGDQQAALIGHGCFEKGDAKNTYGTGCFLLMNTGTEIVFSKH 286 (504)
T ss_pred hCCCHHHCCCccCCccccCccchhhcC-CCCCCcEEEEecHHHHHHHhCcCCCCCceEEeeccceEEEEeeCCccccCCC
Confidence 9999999999999999999995 45 67899999999999999999999 9999999999998865555444555555
Q ss_pred CceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-C---------------------
Q 036892 234 ELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVISSASEIEELALQVHKQ-G--------------------- 291 (447)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~-g--------------------- 291 (447)
+.+..++|..++..|+.|.++|.+.++|.+++|+++.++...+++++++++.++|.. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~gl~~~P~l~G~r~P~~~~~arg 366 (504)
T PTZ00294 287 GLLTTVCYQLGPNGPTVYALEGSIAVAGAGVEWLRDNMGLISHPSEIEKLARSVKDTGGVVFVPAFSGLFAPYWRPDARG 366 (504)
T ss_pred CceEEEEEEecCCCCcEEEEechhhhhHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCEEEeCcccCCCCCCCCCCCCE
Confidence 555556665432235689999999999999999999887545677888888765410 0
Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccc
Q 036892 292 ---------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYF 362 (447)
Q Consensus 292 ---------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~ 362 (447)
+++||+|||+|||+|.+|++++.|++..|.+ +++|+++||+++|++|+ |
T Consensus 367 ~~~Gl~~~~~~~~i~rAvlEgia~~~r~~~~~l~~~~g~~------~~~i~~~GG~a~s~~w~-Q--------------- 424 (504)
T PTZ00294 367 TIVGMTLKTTRAHIVRAALEAIALQTNDVIESMEKDAGIE------LNSLRVDGGLTKNKLLM-Q--------------- 424 (504)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------cceEEEecccccCHHHH-H---------------
Confidence 7999999999999999999999998755777 79999999999999999 9
Q ss_pred hhhhhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhh
Q 036892 363 ECRSADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERIFN 441 (447)
Q Consensus 363 ~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~ 441 (447)
|+||++|+||++++..|++++||||+|++++|.|++++++. .++....++|+|++++++ | ++|++|+++|+.+.+
T Consensus 425 --i~Adv~g~pV~~~~~~e~~alGaAl~aa~a~G~~~~~~~~~-~~~~~~~~~~~P~~~~~~-y~~~~~~~~~~~~~~~~ 500 (504)
T PTZ00294 425 --FQADILGKDIVVPEMAETTALGAALLAGLAVGVWKSLEEVK-KLIRRSNSTFSPQMSAEE-RKAIYKEWNKAVERSLK 500 (504)
T ss_pred --HHHHHhCCceEecCcccchHHHHHHHHHhhcCccCCHHHHH-HhccCCCcEECCCCCHHH-HHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999885 443323578999999999 8 579999999999999
Q ss_pred hhcc
Q 036892 442 LADL 445 (447)
Q Consensus 442 ~~~~ 445 (447)
|.++
T Consensus 501 ~~~~ 504 (504)
T PTZ00294 501 WAKL 504 (504)
T ss_pred cccC
Confidence 9764
No 4
>PRK00047 glpK glycerol kinase; Provisional
Probab=100.00 E-value=6.7e-72 Score=593.05 Aligned_cols=405 Identities=47% Similarity=0.745 Sum_probs=347.6
Q ss_pred HHHHHHHHHHHh-CCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHccccC-ChHHHHHHhCCCC
Q 036892 3 VCMAKALDKATA-DGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIW-GKTHFLEAVGLPI 80 (447)
Q Consensus 3 ~~i~~~~~~~~~-~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~~-~~~~~~~~tG~~~ 80 (447)
+++.++++++.+ .+..+++ |.+||+|+|++++++||+++|+||+|+|+|+|.|+.++++++... ..+.++++||+++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~-I~~Igis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~ 133 (498)
T PRK00047 55 ASQLSVIAEALAKAGISPDQ-IAAIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEELKRDGYEDYIREKTGLVI 133 (498)
T ss_pred HHHHHHHHHHHHHcCCChhH-eeEEEEecCcceEEEEECCCCcCCcccceecccchHHHHHHHHhccchhhHHHhhCCCC
Confidence 345556666543 3566778 999999999999999996259999999999999999999866422 2355899999999
Q ss_pred CcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCc-eEeecchhhccccccCCCCCCChHHHhhcC
Q 036892 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGL-HVTDVSNASRTMLMNLKTLDWDKPTLETLG 159 (447)
Q Consensus 81 ~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~-~~~d~s~As~tgl~d~~~~~W~~~~l~~lg 159 (447)
++.++++||+|+++|+|++|+++++...+|++++|||.|+|||+ + +++|+|+|++|++||+++++|++++++.+|
T Consensus 134 ~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~----~~~~~d~s~As~t~l~d~~~~~W~~ell~~~g 209 (498)
T PRK00047 134 DPYFSGTKIKWILDNVEGARERAEKGELLFGTIDTWLVWKLTGG----KVHVTDYTNASRTMLFNIHTLDWDDELLELLD 209 (498)
T ss_pred CccchHHHHHHHHHcCHhHHHHHhcCCeEEeChHHhHhhhhcCC----CeeEeechHHhhhhccccccCccCHHHHHhcC
Confidence 99999999999999999999999876667889999999999973 5 899999999999999999999999999999
Q ss_pred CCCCCCCCcccCCceeeeec--cCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccCCCce
Q 036892 160 IPAEILPKTFSNSEIIGKLG--KGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELL 236 (447)
Q Consensus 160 i~~~~lP~i~~~g~~iG~l~--~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~~ 236 (447)
|++++||+++++++++|+|+ .+ +.+||||++|++|++|+++|+|+ ++|++.+++|||+++.+.+.++|..++.+..
T Consensus 210 i~~~~lP~i~~~g~~~G~v~~~~~-l~~g~pV~~g~~D~~aa~~G~G~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~ 288 (498)
T PRK00047 210 IPRSMLPEVRPSSEVYGKTNPYGF-FGGEVPIAGIAGDQQAALFGQLCFEPGMAKNTYGTGCFMLMNTGEKAVKSENGLL 288 (498)
T ss_pred CCHHHCCCccCCcccccccccccc-CCCCceEEEEccHHHHHHHhCcCCCCCceEEeeccceEEEEecCCccccCCCCce
Confidence 99999999999999999995 34 55899999999999999999999 9999999999999866655445665555555
Q ss_pred eeeccccCCCCCCceeecccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-C------------------------
Q 036892 237 STLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVISSASEIEELALQVHKQ-G------------------------ 291 (447)
Q Consensus 237 ~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~-g------------------------ 291 (447)
..+++.+. .++.|.+++++.++|.+++|+++.++....+++++++++++|.. +
T Consensus 289 ~~~~~~~~--~~~~~~~~g~~~~~g~~l~W~~~~~~~~~~~~~~~~~a~~~~~~~gl~~lP~l~G~r~P~~d~~arg~~~ 366 (498)
T PRK00047 289 TTIAWGID--GKVVYALEGSIFVAGSAIQWLRDGLKIISDASDSEALARKVEDNDGVYVVPAFTGLGAPYWDSDARGAIF 366 (498)
T ss_pred eEEEEEcC--CCcEEEEEeeHhhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCCEEEeCccccCCCCCCCCCCcEEEE
Confidence 55555431 12269999999999999999999886544566777777655421 1
Q ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhh
Q 036892 292 ------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECR 365 (447)
Q Consensus 292 ------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~ 365 (447)
+++||+||++|||||.+|++++.|++..|.+ +++|+++||+++|++|+ | |
T Consensus 367 Gl~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~g~~------~~~i~~~GGga~s~~w~-Q-----------------i 422 (498)
T PRK00047 367 GLTRGTTKEHIIRATLESIAYQTRDVLDAMQADSGIR------LKELRVDGGAVANNFLM-Q-----------------F 422 (498)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CceEEEecCcccCHHHH-H-----------------H
Confidence 7999999999999999999999998655777 79999999999999999 9 9
Q ss_pred hhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhhh
Q 036892 366 SADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERIFNL 442 (447)
Q Consensus 366 ~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~ 442 (447)
+||+||+||+++...|++++|||++|++++|.|++++++ ..+.+ ..++|+|++++++ | ++|++|+++|+++..|
T Consensus 423 ~ADvlg~pV~~~~~~e~~a~GaA~~A~~~~G~~~~~~~~-~~~~~-~~~~~~P~~~~~~-y~~~~~~~~~~~~~~~~~ 497 (498)
T PRK00047 423 QADILGVPVERPVVAETTALGAAYLAGLAVGFWKDLDEL-KEQWK-IDRRFEPQMDEEE-REKLYAGWKKAVKRTLAW 497 (498)
T ss_pred HHHhhCCeeEecCcccchHHHHHHHHhhhcCcCCCHHHH-HhhcC-CCeEECCCCCHHH-HHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999887 56665 5789999999988 6 5799999999998776
No 5
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=100.00 E-value=7.3e-72 Score=593.69 Aligned_cols=395 Identities=21% Similarity=0.297 Sum_probs=345.8
Q ss_pred HHHHHHHHHHHhC-CCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHccc-cCChHHHHHHhCCCC
Q 036892 3 VCMAKALDKATAD-GHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGI-IWGKTHFLEAVGLPI 80 (447)
Q Consensus 3 ~~i~~~~~~~~~~-~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~-~~~~~~~~~~tG~~~ 80 (447)
+++.++++++.+. +.. ++ |.+||||+||+++++||+ +|+||+|+|+|+|.|+.++++++. ..+..+++++||+++
T Consensus 50 ~~~~~~i~~~~~~~~~~-~~-I~~Igis~~~~~~v~~D~-~g~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~ 126 (505)
T TIGR01314 50 EAVLVTIREVSINLEDE-DE-ILFVSFSTQMHSLIAFDE-NWQPLTRLITWADNRAVKYAEQIKESKNGFDIYRRTGTPI 126 (505)
T ss_pred HHHHHHHHHHHHhCCCc-Cc-eEEEEEecccceeEEECC-CcCCcccceeccccchHHHHHHHHhhcCHHHHHHHHCCCC
Confidence 3455556665442 233 67 999999999999999999 999999999999999999988654 234567899999999
Q ss_pred CcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcCC
Q 036892 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGI 160 (447)
Q Consensus 81 ~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lgi 160 (447)
++.++++||+|+++|+|++++++++ |++++|||.|+||| ++++|+|+|++|++||+++++|++++++.+||
T Consensus 127 ~~~~~~~kl~Wl~~~~p~~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi 197 (505)
T TIGR01314 127 HPMAPLSKIIWLEAEHPDIYQKAAK----YLEIKGYIFQRLFG-----TYKIDYSTASATGMFNLFELDWDKEALELTGI 197 (505)
T ss_pred CccchHHHHHHHHHhChhHHHhhcE----EECHHHHHHHHHcC-----CceeEhhhhhhhcceeCCCCCCCHHHHHhcCC
Confidence 9999999999999999999999986 99999999999999 89999999999999999999999999999999
Q ss_pred CCCCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccCC
Q 036892 161 PAEILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKH 233 (447)
Q Consensus 161 ~~~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~~ 233 (447)
++++||+++++++++|+|+ +| |++|+||++|++|++|+++|+|+ ++|++++++|||+++.+++ ++|..++.
T Consensus 198 ~~~~lP~l~~~g~~iG~l~~~~a~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~-~~~~~~~~ 275 (505)
T TIGR01314 198 KESQLPKLVPTTEIEENLPHEYAKKMG-IQSSTPFVIGASDGVLSNLGVNAIKKGEAAVTIGTSGAIRTVI-DKPKTDEK 275 (505)
T ss_pred CHHHCCCCcCcccccCCcCHHHHHHhC-CCCCCeEEEeccHHHHHHhcCCCCCCCcEEEEechhheeeecc-CcCccCCC
Confidence 9999999999999999994 67 88999999999999999999999 9999999999999887665 55655554
Q ss_pred CceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCC----------CCCHHHHHHHHHhcCCCC------------
Q 036892 234 ELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGV----------ISSASEIEELALQVHKQG------------ 291 (447)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~----------~~~~~~l~~~a~~~~~~g------------ 291 (447)
+.. ++|.+ .++.|.++++++++|.+++|+++.+.. .+.|+.|++++.++|++.
T Consensus 276 ~~~--~~~~~---~~~~~~~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~P~l~G~ 350 (505)
T TIGR01314 276 GRI--FCYAL---TKEHWVIGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARVSPGADGLLFHPYLAGE 350 (505)
T ss_pred Cce--EEEEe---cCCcEEEEeeecchHhHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHhhCCCCCCceEEecccccC
Confidence 432 34432 246899999999999999999987642 135888999988776531
Q ss_pred --------------------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhh
Q 036892 292 --------------------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKY 351 (447)
Q Consensus 292 --------------------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~ 351 (447)
+++||+||++|||+|.++++++.+++..|.+ +++|+++||+++|++|+ |
T Consensus 351 r~P~~~~~~rg~f~Gl~~~~~~~~l~rAvlEgia~~~~~~~~~~~~~~g~~------~~~i~~~GGga~s~~w~-Q---- 419 (505)
T TIGR01314 351 RAPLWNANARGSFFGLTYSHKKEHMIRAALEGVIYNLYTVALALVEVMGDP------LNMIQATGGFASSEVWR-Q---- 419 (505)
T ss_pred CCCCCCCCccEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CcEEEEecCcccCHHHH-H----
Confidence 7999999999999999999999997756776 89999999999999999 9
Q ss_pred cccCccccccchhhhhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccccCCCcEEeCCCCHHHHH-HHHH
Q 036892 352 YYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERTKTSTTFKPVLNEEFRK-KKAE 430 (447)
Q Consensus 352 ~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~ 430 (447)
|+||++|+||++++..|++++|||++|++++|.+++++++ ..+.+ ..++|+|++++++.| ++|+
T Consensus 420 -------------i~Adv~g~pv~~~~~~e~~a~GaA~la~~~~G~~~~~~~~-~~~~~-~~~~~~P~~~~~~~Y~~~y~ 484 (505)
T TIGR01314 420 -------------MMSDIFEQEIVVPESYESSCLGACILGLKALGLIEDFSEV-STMVG-TTETHTPIEKNFEIYREISP 484 (505)
T ss_pred -------------HHHHHcCCeeEecCCCCcchHHHHHHHHHhcCccCCHHHH-HHhcC-CCceECcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887 56666 578999999999888 4799
Q ss_pred HHHHHHHHHhhh
Q 036892 431 SWCRAVERIFNL 442 (447)
Q Consensus 431 ~~~~~~~~~~~~ 442 (447)
+|+++|+++...
T Consensus 485 ~y~~~~~~~~~~ 496 (505)
T TIGR01314 485 IFINLSRSLLAE 496 (505)
T ss_pred HHHHHHHHHHHH
Confidence 999999988753
No 6
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=100.00 E-value=1.1e-70 Score=583.00 Aligned_cols=407 Identities=52% Similarity=0.817 Sum_probs=347.3
Q ss_pred HHHHHHHHHHh-CCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHcccc-CChHHHHHHhCCCCC
Q 036892 4 CMAKALDKATA-DGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGII-WGKTHFLEAVGLPIS 81 (447)
Q Consensus 4 ~i~~~~~~~~~-~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~-~~~~~~~~~tG~~~~ 81 (447)
.+.++++++.+ .+..+++ |.+||+|+|++++|+||+++|+||+|+|+|+|.|+.++++++.+ ...+.++++||++++
T Consensus 52 ~i~~~i~~~~~~~~~~~~~-i~aIgis~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~ 130 (493)
T TIGR01311 52 SVLSCIAEALAKAGIKPDD-IAAIGITNQRETTVVWDKATGKPLYNAIVWQDRRTASICEELKAEGYGEFIREKTGLPLD 130 (493)
T ss_pred HHHHHHHHHHHHcCCChhh-eeEEEEecCcceEEEEECCCCcCcccceeecccchHHHHHHHHHhcchHHHHHHhCCcCC
Confidence 34455555432 3556778 99999999999999999724999999999999999999986542 334678999999999
Q ss_pred cccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcCCC
Q 036892 82 TCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP 161 (447)
Q Consensus 82 ~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lgi~ 161 (447)
+.++++||+|+++|+||++++++++..+|++++|||.|+|||. ++.++|+|+|++|+|||+++++|++++++.+||+
T Consensus 131 ~~~~~~kl~wlk~~~Pe~~~~~~~~~~~~~~~~dyl~~~LtG~---~~~~~d~s~As~t~l~d~~~~~W~~~~l~~~gi~ 207 (493)
T TIGR01311 131 PYFSATKLRWLLDNVPGVREAAERGELLFGTIDTWLIWNLTGG---KVHVTDVTNASRTMLFNIHTLDWDDELLELFGIP 207 (493)
T ss_pred ccchHHHHHHHHhcCHHHHHHhhcCCeEEECHhHhhhhhccCC---ceEEeccchhhhhhcccccccccCHHHHHHcCCC
Confidence 9999999999999999999999865567889999999999992 2688999999999999999999999999999999
Q ss_pred CCCCCCcccCCceeeeeccCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccCCCceeeec
Q 036892 162 AEILPKTFSNSEIIGKLGKGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLA 240 (447)
Q Consensus 162 ~~~lP~i~~~g~~iG~l~~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~~~~~~ 240 (447)
+++||+++++++++|.++...+.+|+||++|++|++|+++|+|+ ++|++.+++|||+++.+.+++.+..++.+....++
T Consensus 208 ~~~lP~l~~~g~~~G~v~~~~l~~g~pV~~g~~D~~aa~~G~g~~~~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T TIGR01311 208 REILPEVRSSSEVYGYTDPGLLGAEIPITGVLGDQQAALFGQACFKPGQAKNTYGTGCFLLMNTGEKPVISKHGLLTTVA 287 (493)
T ss_pred HHHCCCccCCccceecccccccCCCceEEEecccHHHHHhhCcCCCCCceEEeecccceEeeecCCccccCCCCceEEEE
Confidence 99999999999999999643266899999999999999999999 99999999999988655554444445555555566
Q ss_pred cccCCCCCCceeecccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-C----------------------------
Q 036892 241 FKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVISSASEIEELALQVHKQ-G---------------------------- 291 (447)
Q Consensus 241 ~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~-g---------------------------- 291 (447)
|.++. .+..|.++|++.++|.+++|+++.++...+++++++++.++|.. +
T Consensus 288 ~~~~~-~~~~~~~~g~~~~~g~~~~W~~~~~~~~~~~~~~~~~a~~~~g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~ 366 (493)
T TIGR01311 288 YQLGG-KKPVYALEGSVFVAGAAVQWLRDNLKLIKHAAESEALARSVEDNGGVYFVPAFTGLGAPYWDPDARGAIFGLTR 366 (493)
T ss_pred EecCC-CCceEEEEeehhhhHHHHHHHHHHhCCCCCHHHHHHHHhcCCCCCCEEEeCcccCCCCCcCCCCCcEEEECcCC
Confidence 64310 00148999999999999999999887544677888777654421 0
Q ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhc
Q 036892 292 --SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADL 369 (447)
Q Consensus 292 --~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Adv 369 (447)
+++||+|||+|||+|.+|++++.|++..|.+ +++|+++||+++|++|+ | |+||+
T Consensus 367 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~g~~------~~~i~~~GGga~s~~w~-Q-----------------i~ADv 422 (493)
T TIGR01311 367 GTTKAHIARAALEAIAFQTRDVLEAMEKDAGVE------ITKLRVDGGMTNNNLLM-Q-----------------FQADI 422 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CceEEEecccccCHHHH-H-----------------HHHHh
Confidence 7999999999999999999999998645776 79999999999999999 9 99999
Q ss_pred cCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhhh
Q 036892 370 LGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERIFNL 442 (447)
Q Consensus 370 l~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~ 442 (447)
+|+||++++..|++++||||+|++++|.|++++++ +.+++ ..++|+|+++++. | ++|++|+++|+++.+|
T Consensus 423 ~g~pv~~~~~~e~~alGaA~~a~~~~G~~~~~~~a-~~~~~-~~~~~~P~~~~~~-y~~~~~~~~~~~~~~~~~ 493 (493)
T TIGR01311 423 LGVPVVRPKVTETTALGAAYAAGLAVGYWKSLEEI-EALWR-VEKTFEPEMDEEE-REARYAGWKEAVKRSLGW 493 (493)
T ss_pred cCCeeEecCCCcchHHHHHHHHHhhcCcCCCHHHH-HHhcC-CCcEECCCCCHHH-HHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999987 67776 5789999999988 6 6799999999998876
No 7
>PRK15027 xylulokinase; Provisional
Probab=100.00 E-value=2.8e-70 Score=578.71 Aligned_cols=392 Identities=21% Similarity=0.267 Sum_probs=337.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHccccCChHHHHHHhCCCCCc
Q 036892 3 VCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIWGKTHFLEAVGLPIST 82 (447)
Q Consensus 3 ~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~~~~~~~~~~tG~~~~~ 82 (447)
.++.++++++.++ ...++ |.+||+|+|+||+++||+ +|+||+|+|+|+|+|+.++++++.... ..+++.||+++++
T Consensus 50 ~~~~~~~~~l~~~-~~~~~-I~aI~is~q~~~~v~~D~-~g~~l~p~i~w~D~R~~~~~~~l~~~~-~~~~~~tG~~~~~ 125 (484)
T PRK15027 50 QATDRAMKALGDQ-HSLQD-VKALGIAGQMHGATLLDA-QQRVLRPAILWNDGRCAQECALLEARV-PQSRVITGNLMMP 125 (484)
T ss_pred HHHHHHHHHHHHh-CCccc-eeEEEEecCCCceEEECC-CcCCccccccccCccHHHHHHHHHHhc-chhHHHhCCCcCc
Confidence 3556666666542 24567 999999999999999999 999999999999999999998654211 1456899999999
Q ss_pred ccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcCCCC
Q 036892 83 CFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIPA 162 (447)
Q Consensus 83 ~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lgi~~ 162 (447)
.++++||+|+++|+||+|+++++ |++++|||.|+||| ++++|+|+|++|++||+++++|++++++.+||++
T Consensus 126 ~~~~~kl~Wl~~~~Pe~~~~~~~----~~~~~dyl~~~LTG-----~~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~~ 196 (484)
T PRK15027 126 GFTAPKLLWVQRHEPEIFRQIDK----VLLPKDYLRLRMTG-----EFASDMSDAAGTMWLDVAKRDWSDVMLQACHLSR 196 (484)
T ss_pred cchHHHHHHHHHhCHHHHHHhhh----hcChHHHHHhhhcC-----CccccHHHhhcccccccccCCCcHHHHHHhCCCH
Confidence 99999999999999999999986 99999999999999 8999999999999999999999999999999999
Q ss_pred CCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccCCCc
Q 036892 163 EILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHEL 235 (447)
Q Consensus 163 ~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~ 235 (447)
++||+++++++++|+|+ +| |+ ++||++|++|++|+++|+|+ ++|++.+++|||+++..++ +++..++.+.
T Consensus 197 ~~lP~v~~~~~~~G~l~~~~a~~~G-L~-~~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~-~~~~~~~~~~ 273 (484)
T PRK15027 197 DQMPALYEGSEITGALLPEVAKAWG-MA-TVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVS-EGFLSKPESA 273 (484)
T ss_pred HHCCCCCCCccccccccHHHHHHhC-CC-CCeEEecccHHHHHHhccCcccCCcEEEEecCceEEEEec-CCcccCchhc
Confidence 99999999999999994 57 55 79999999999999999999 9999999999998876655 4454444333
Q ss_pred eeeeccccCCCCCCceeecccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC------------------------
Q 036892 236 LSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVISSASEIEELALQVHKQG------------------------ 291 (447)
Q Consensus 236 ~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~g------------------------ 291 (447)
+..+++. .|+.|.++|.+.++|.+++|+++.++. .+|+++.+.+.++|++.
T Consensus 274 ~~~~~~~----~~~~~~~~~~~~~~g~~~~W~~~~~~~-~~~~~~~~~a~~~~~g~~gl~~~P~l~G~r~P~~~~~arg~ 348 (484)
T PRK15027 274 VHSFCHA----LPQRWHLMSVMLSAASCLDWAAKLTGL-SNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGV 348 (484)
T ss_pred eeeccee----cCCceEEEEEehhhHHHHHHHHHHhCC-ccHHHHHHHHhhCCCCCCceEEecccccCCCcCCCCCcceE
Confidence 3334443 478899999999999999999998864 35777877777766531
Q ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccch
Q 036892 292 --------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFE 363 (447)
Q Consensus 292 --------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~ 363 (447)
+++||+||++|||||.+|++++.|++ .|.+ +++|+++||+++|++|+ |
T Consensus 349 f~gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~-~g~~------~~~i~~~GGga~s~~w~-Q---------------- 404 (484)
T PRK15027 349 FFGLTHQHGPNELARAVLEGVGYALADGMDVVHA-CGIK------PQSVTLIGGGARSEYWR-Q---------------- 404 (484)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC------ccEEEEeCcccCCHHHH-H----------------
Confidence 79999999999999999999999986 5777 79999999999999999 9
Q ss_pred hhhhhccCCceeecCC-CCccHHHHHHHHHHhcCCCCCHHHHhcccccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhh
Q 036892 364 CRSADLLGSPVIRPAD-IETTALGAAFAAGLAIGVFKEEEIFASGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERIFN 441 (447)
Q Consensus 364 ~~~Advl~~pV~~~~~-~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~ 441 (447)
|+||++|+||++... .+++++||||+|++++|.+++++++.+ +.+ ..++|+|++++++.| ++|++|+++|+++..
T Consensus 405 -i~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~~~~~~~-~~~-~~~~~~P~~~~~~~Y~~~~~~y~~~y~~~~~ 481 (484)
T PRK15027 405 -MLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELLP-QLP-LEQSHLPDAQRYAAYQPRRETFRRLYQQLLP 481 (484)
T ss_pred -HHHHHhCCeEEeecCCCcchHHHHHHHHHHhcCCcCCHHHHHh-hcC-CCceECCCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999977654 458999999999999999999998754 444 578999999999988 579999999998765
Q ss_pred h
Q 036892 442 L 442 (447)
Q Consensus 442 ~ 442 (447)
+
T Consensus 482 ~ 482 (484)
T PRK15027 482 L 482 (484)
T ss_pred h
Confidence 3
No 8
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=100.00 E-value=6e-70 Score=580.88 Aligned_cols=398 Identities=24% Similarity=0.302 Sum_probs=342.9
Q ss_pred HHHHHHHHHHh-CCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHcccc-CC--hHHHHHHhCCC
Q 036892 4 CMAKALDKATA-DGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGII-WG--KTHFLEAVGLP 79 (447)
Q Consensus 4 ~i~~~~~~~~~-~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~-~~--~~~~~~~tG~~ 79 (447)
++.++++++.+ .+..+++ |.+||+|+|++++++||+ +|+||.+ +.|+|.|+.++++++.. .+ .++++++||.+
T Consensus 56 ~~~~~l~~~~~~~~~~~~~-I~aI~~s~~~~~~v~~D~-~g~pl~~-~~~~D~Ra~~~~~~l~~~~~~~~~~~~~~tG~~ 132 (520)
T PRK10939 56 LACQCIRQALQKAGIPASD-IAAVSATSMREGIVLYDR-NGTEIWA-CANVDARASREVSELKELHNNFEEEVYRCSGQT 132 (520)
T ss_pred HHHHHHHHHHHHcCCCccc-eEEEEEECCcccEEEECC-CCCEeeC-CcCCCcccHHHHHHHHHhcChHHHHHHHHhCCc
Confidence 44455555442 3556677 999999999999999999 9999975 78999999999986542 22 35788999987
Q ss_pred CCcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcC
Q 036892 80 ISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLG 159 (447)
Q Consensus 80 ~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lg 159 (447)
+ +.++++||+|+++|+|++|+++++ |++++|||.|+||| ++++|+|+|++|++||+++++|++++++.+|
T Consensus 133 ~-~~~~~~kl~Wl~~~~pe~~~~~~~----~~~~~dyl~~~LTG-----~~~~d~s~As~tgl~d~~~~~W~~~ll~~~g 202 (520)
T PRK10939 133 L-ALGALPRLLWLAHHRPDIYRQAHT----ITMISDWIAYMLSG-----ELAVDPSNAGTTGLLDLVTRDWDPALLEMAG 202 (520)
T ss_pred C-CcchHHHHHHHHHcCcHHHHHhhe----EechhHhhhheeeC-----ceeeEhhhhhceeeeecCCCCCCHHHHHHcC
Confidence 6 678999999999999999999986 99999999999999 8999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccC
Q 036892 160 IPAEILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSK 232 (447)
Q Consensus 160 i~~~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~ 232 (447)
|++++||+++++++++|+|+ +| |++|+||++|++|++|+++|+|+ ++|++++++|||+++.+++ +++..++
T Consensus 203 i~~~~lP~i~~~g~~~G~v~~~~A~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~-~~~~~~~ 280 (520)
T PRK10939 203 LRADILPPVKETGTVLGHVTAKAAAETG-LRAGTPVVMGGGDVQLGCLGLGVVRPGQTAVLGGTFWQQVVNL-PAPVTDP 280 (520)
T ss_pred CCHHHCCCCccCCceeeeecHHHHHhhC-CCCCCcEEEeCchHHHHHhhcCcccCCcEEEeecCcceeEEec-cccccCc
Confidence 99999999999999999994 67 88999999999999999999999 9999999999999876656 3344444
Q ss_pred CCceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCCC----------CCHHHHHHHHHhcCCCC-----------
Q 036892 233 HELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVI----------SSASEIEELALQVHKQG----------- 291 (447)
Q Consensus 233 ~~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~----------~~~~~l~~~a~~~~~~g----------- 291 (447)
......+++ ..++.|.+++.++++|.+++||++.++.+ ..|++|+++++++|++.
T Consensus 281 ~~~~~~~~~----~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~P~l~g~~ 356 (520)
T PRK10939 281 NMNIRINPH----VIPGMVQAESISFFTGLTMRWFRDAFCAEEKLLAERLGIDAYSLLEEMASRVPVGSHGIIPIFSDVM 356 (520)
T ss_pred cccceecee----eeCCcceEeeeeccceeeeehHHhhhchHHHHHHHhcCCCHHHHHHHHHhhCCCCCCCCcccccCCC
Confidence 322222232 24788999999999999999999987531 34888999888776421
Q ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhh
Q 036892 292 ----------------------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFE 349 (447)
Q Consensus 292 ----------------------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~ 349 (447)
+++||+||++|||+|.+|++++.|++..|.+ +++|+++||+++|++|+ |
T Consensus 357 ~~~~~~~~~g~f~Gl~~~~~~~~~~~~~RAvlEgia~~~~~~l~~l~~~~g~~------~~~i~~~GGga~s~~w~-Q-- 427 (520)
T PRK10939 357 RFKSWYHAAPSFINLSIDPEKCNKATLFRALEENAAIVSACNLQQIAAFSGVF------PSSLVFAGGGSKGKLWS-Q-- 427 (520)
T ss_pred CCCCCcccceeEEccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CcEEEEeCCcccCHHHH-H--
Confidence 4799999999999999999999998744777 79999999999999999 9
Q ss_pred hhcccCccccccchhhhhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccccCCCcEEeCCCCHHHHH-HH
Q 036892 350 KYYYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERTKTSTTFKPVLNEEFRK-KK 428 (447)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~ 428 (447)
|+||++|+||++++..|++++|||++|++++|.|++++++++.+.+ ..++|+|++++++.| ++
T Consensus 428 ---------------i~ADvlg~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~a~~~~~~-~~~~~~P~~~~~~~y~~~ 491 (520)
T PRK10939 428 ---------------ILADVTGLPVKVPVVKEATALGCAIAAGVGAGIYSSLAETGERLVR-WERTFEPNPENHELYQEA 491 (520)
T ss_pred ---------------HHHHhcCCeeEEecccCchHHHHHHHHHHHhCCCCCHHHHHHHHcc-cCceECcCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998777766 578999999998877 57
Q ss_pred HHHHHHHHHHHhhhhcc
Q 036892 429 AESWCRAVERIFNLADL 445 (447)
Q Consensus 429 y~~~~~~~~~~~~~~~~ 445 (447)
|++|+++|+++..+.|.
T Consensus 492 y~~y~~l~~~~~~~~~~ 508 (520)
T PRK10939 492 KEKWQAVYADQLGLVDH 508 (520)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 99999999988877664
No 9
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=100.00 E-value=3.4e-68 Score=561.77 Aligned_cols=391 Identities=26% Similarity=0.362 Sum_probs=343.2
Q ss_pred HHHHHHHHHHHh-CCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHccc-cCChHHHHHHhCCCC
Q 036892 3 VCMAKALDKATA-DGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGI-IWGKTHFLEAVGLPI 80 (447)
Q Consensus 3 ~~i~~~~~~~~~-~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~-~~~~~~~~~~tG~~~ 80 (447)
.++.++++++.+ .+..+++ |.+||+++|++|+|+||+ +|+|++|.++|.|.|..++++++. ..+.+.+++.+|+..
T Consensus 48 ~~l~~~i~~~~~~~~~~~~~-I~gIgvs~~~~g~v~~d~-~g~~l~~~i~W~D~r~~~~~~~l~~~~~~~~~~~~~g~~~ 125 (481)
T TIGR01312 48 DATEEAIKELLEQASEMGQD-IKGIGISGQMHGLVLLDA-NGEVLRPAILWNDTRTAQECEELEAELGDERVLEITGNLA 125 (481)
T ss_pred HHHHHHHHHHHHhcCCCccc-EEEEEEecCCceeEEECC-CcCCCccchhhhccchHHHHHHHHHhcCHhHHHHHHCCCC
Confidence 345566666543 3456677 999999999999999998 999999999999999977766443 134567889999999
Q ss_pred CcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcCC
Q 036892 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGI 160 (447)
Q Consensus 81 ~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lgi 160 (447)
.+.++++||+|+++|+|++++++++ |++++|||.|+||| +.++|+|+|++|++||+++++|++++++.+|+
T Consensus 126 ~~~~~~~kl~wl~~~~p~~~~~~~~----~~~~~~yi~~~LtG-----~~~~d~t~as~tgl~d~~~~~W~~~~l~~~gi 196 (481)
T TIGR01312 126 LPGFTAPKLLWVRKHEPEVFARIAK----VMLPKDYLRYRLTG-----EYVTEYSDASGTGWFDVAKRAWSKELLDALDL 196 (481)
T ss_pred CccchHHHHHHHHHcChHHHHHhhe----eeCchHHHhhhhcC-----CeeeeHHHhhcccccccCCCCCCHHHHHHhCC
Confidence 9999999999999999999999986 99999999999999 88999999999999999999999999999999
Q ss_pred CCCCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccCC
Q 036892 161 PAEILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKH 233 (447)
Q Consensus 161 ~~~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~~ 233 (447)
++++||+++++++++|+++ +| +++|+||++|+||++|+++|+|+ ++|++++++|||+++..++ +++..++.
T Consensus 197 ~~~~Lp~iv~~~~~~G~v~~~~a~~~G-l~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~GTs~~~~~~~-~~~~~~~~ 274 (481)
T TIGR01312 197 PESQLPELIESSEKAGTVRPEVAARLG-LSAGVPVAAGGGDNAAGAIGTGTVDPGDAMMSLGTSGVVYAVT-DKPLPDPA 274 (481)
T ss_pred CHHHCCCccCCCCeeeeEcHHHHHHhC-CCCCCeEEecchHHHHHhhCCCcccCCcEEEEecCceEEEEec-CCcccCcc
Confidence 9999999999999999995 67 88999999999999999999999 9999999999999887665 45555554
Q ss_pred CceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--C--------------------
Q 036892 234 ELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVISSASEIEELALQVHKQ--G-------------------- 291 (447)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~--g-------------------- 291 (447)
+.+..++|. .|+.|.++++..++|.+++|+++.++. .+|+.|++++.++|++ +
T Consensus 275 ~~~~~~~~~----~~~~~~~~~~~~~~g~~~~w~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~G~r~P~~~~~~~ 349 (481)
T TIGR01312 275 GAVHGFCHA----LPGGWLPMGVTLSATSSLEWFRELFGK-EDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQAR 349 (481)
T ss_pred cceeeeeee----cCCceEEEeEehhhHHHHHHHHHHhCC-CcHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCCcc
Confidence 444445553 468899999999999999999998863 3688899988877642 1
Q ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCcccccc
Q 036892 292 ----------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSY 361 (447)
Q Consensus 292 ----------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~ 361 (447)
+++||+||++|||+|.+|++++.|++..|.+ +++|+++||+++|++|+ |
T Consensus 350 g~~~gl~~~~~~~~l~railEgia~~~~~~~~~l~~~~~~~------~~~i~~~GG~s~s~~~~-Q-------------- 408 (481)
T TIGR01312 350 GSFIGLTHNTTRADLTRAVLEGVTFALRDSLDILREAGGIP------IQSIRLIGGGAKSPAWR-Q-------------- 408 (481)
T ss_pred eEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------cceEEEeccccCCHHHH-H--------------
Confidence 6999999999999999999999998744566 79999999999999999 9
Q ss_pred chhhhhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccccCCCcEEeCCCCHHHHH-HHHHHHHHHH
Q 036892 362 FECRSADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERTKTSTTFKPVLNEEFRK-KKAESWCRAV 436 (447)
Q Consensus 362 ~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~ 436 (447)
++||++|+||++++..|++++|||++|++++|.+++++++.+.+.+ ..+.|+|++++++.| ++|++|+++|
T Consensus 409 ---~~Adv~g~pv~~~~~~e~~a~GaA~~a~~~~g~~~~~~~a~~~~~~-~~~~~~P~~~~~~~y~~~~~~~~~~~ 480 (481)
T TIGR01312 409 ---MLADIFGTPVDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVK-QTESVLPIAENVEAYEELYERYKKLY 480 (481)
T ss_pred ---HHHHHhCCceeecCCCcchHHHHHHHHHHhcCCCCCHHHHHhhccC-CCceECCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998877776 577899999998877 5799999875
No 10
>PRK10331 L-fuculokinase; Provisional
Probab=100.00 E-value=3.9e-68 Score=560.48 Aligned_cols=378 Identities=21% Similarity=0.246 Sum_probs=320.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHcccc-CChHHHHHHhCCCCC
Q 036892 3 VCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGII-WGKTHFLEAVGLPIS 81 (447)
Q Consensus 3 ~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~-~~~~~~~~~tG~~~~ 81 (447)
+++.++++++.++ ...++ |.+|+||+|++++++||+ +|+||+|+|+|+|.|+.++++++.. .+.+.++++||+++.
T Consensus 54 ~~~~~~~~~~~~~-~~~~~-I~~I~is~~~~~~v~~D~-~G~pl~p~i~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~~ 130 (470)
T PRK10331 54 QRFADCCRQINSE-LTECH-IRGITVTTFGVDGALVDK-QGNLLYPIISWKCPRTAAVMENIERYISAQQLQQISGVGAF 130 (470)
T ss_pred HHHHHHHHHHHHh-CCccc-eEEEEEeccccceEEECC-CcCCccCceeecCCCcHHHHHHHHHhcCHHHHHhhhCCCcc
Confidence 3455555555432 23457 999999999999999999 9999999999999999999986542 345678999999999
Q ss_pred cccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcCCC
Q 036892 82 TCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP 161 (447)
Q Consensus 82 ~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lgi~ 161 (447)
+.++++||+|+++|+|++++++++ |++++|||.|+||| ++++|+|+|++|++||+++++|++++++.+||+
T Consensus 131 ~~~~~~Kl~Wl~~~~P~~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~ell~~~gi~ 201 (470)
T PRK10331 131 SFNTLYKLVWLKENHPQLLEQAHA----WLFISSLINHRLTG-----EFTTDITMAGTSQMLDIQQRDFSPEILQATGLS 201 (470)
T ss_pred ccchHHHHHHHHHhCHHHHHHhhh----hcCHHHHHHHhhcC-----ccccchhhccceeeeecccCCCCHHHHHHcCCC
Confidence 999999999999999999999986 99999999999999 899999999999999999999999999999999
Q ss_pred CCCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCCCCCcEEEEecccceeccccCccccccCC--
Q 036892 162 AEILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQACKKGEVKSTYGTGAFILLNTGEEVVKSKH-- 233 (447)
Q Consensus 162 ~~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~~~g~~~~s~GTs~~i~~~~~~~~~~~~~-- 233 (447)
+++||+++++++++|+|+ +| |++|+||++|++|++|+++|+|+.+|++++++|||.++..++ ++|..+..
T Consensus 202 ~~~lP~i~~~g~~~G~v~~~~a~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~g~~~~~~GT~~~~~~~~-~~~~~~~~~~ 279 (470)
T PRK10331 202 RRLFPRLVEAGEQIGTLQPSAAALLG-LPVGIPVISAGHDTQFALFGSGAGQNQPVLSSGTWEILMVRS-AQVDTSLLSQ 279 (470)
T ss_pred HHHCCCcccccccccccCHHHHHHhC-CCCCCeEEEccccHHHHHhCCCCCCCCEEEecchhhhheeec-CCCccccccc
Confidence 999999999999999994 67 789999999999999999999998899999999998876555 44443321
Q ss_pred --CceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCC--C-----------------
Q 036892 234 --ELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGV-ISSASEIEELALQVHKQ--G----------------- 291 (447)
Q Consensus 234 --~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~-~~~~~~l~~~a~~~~~~--g----------------- 291 (447)
+... .+ +..++.|..++.... |.+++|+++.++. ...|+.|++.++++|++ +
T Consensus 280 ~~~~~~--~~---~~~~~~~~~~~~~~~-g~~~~W~~~~~~~~~~~y~~l~~~a~~~~~g~~gl~~~p~~~g~~rg~~~G 353 (470)
T PRK10331 280 YAGSTC--EL---DSQSGLYNPGMQWLA-SGVLEWVRKLFWTAETPYQTMIEEARAIPPGADGVKMQCDLLACQNAGWQG 353 (470)
T ss_pred ccccce--ec---cccCceeeechhhHH-HHHHHHHHHHhcccCchHHHHHHHHhcCCCCCCceEecccccccCceeEEC
Confidence 2111 11 123566665554444 4599999998753 24589999999887753 1
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhh
Q 036892 292 -----SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRS 366 (447)
Q Consensus 292 -----~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~ 366 (447)
+++||+||++|||+|++|++++.|++..+.+ +++|+++||+++|++|+ | |+
T Consensus 354 l~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~~~~~------~~~i~~~GGga~s~~w~-Q-----------------i~ 409 (470)
T PRK10331 354 VTLNTTRGHFYRAALEGLTAQLKRNLQVLEKIGHFK------ASELLLVGGGSRNALWN-Q-----------------IK 409 (470)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CceEEEEcccccCHHHH-H-----------------HH
Confidence 7999999999999999999999998743455 79999999999999999 9 99
Q ss_pred hhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccccCCCcEEeCCCCHHHHH
Q 036892 367 ADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERTKTSTTFKPVLNEEFRK 426 (447)
Q Consensus 367 Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~~~~~~~P~~~~~~~~ 426 (447)
||++|+||++++..|++++|||++|++++|.|++++++++.+.+ ..++|+|+++ .+.|
T Consensus 410 Advlg~pV~~~~~~e~~a~GaA~la~~~~G~~~~~~~a~~~~~~-~~~~~~P~~~-~~~y 467 (470)
T PRK10331 410 ANMLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQARAQMKY-QYRYFYPQTE-PEFI 467 (470)
T ss_pred HHhcCCeeEecCcccchHHHHHHHHHHhcCCCCCHHHHHHHHhh-cceeECCCcc-Hhhh
Confidence 99999999999999999999999999999999999998777765 4678999944 5444
No 11
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=100.00 E-value=3.3e-67 Score=561.90 Aligned_cols=393 Identities=20% Similarity=0.251 Sum_probs=329.8
Q ss_pred HHHHHHHHHHh-CCCCCCCCeeEEEEcCcccceEEEeCCCCccc---------ccccccccCCcHHHHHccccCChHHHH
Q 036892 4 CMAKALDKATA-DGHNVDTGLKAIGLTNQRETTVLWSKSTGCPL---------YNAIVWMDARNSSEIGEGIIWGKTHFL 73 (447)
Q Consensus 4 ~i~~~~~~~~~-~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl---------~~~i~W~D~R~~~~~~~~~~~~~~~~~ 73 (447)
++.++++++.+ .+...++ |++||||+| +++++||+ +|+|| +|+|+|+|.|+.++++++.... ..++
T Consensus 51 ~~~~~i~~~~~~~~~~~~~-I~~Igis~~-~s~v~~D~-~g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~-~~~~ 126 (541)
T TIGR01315 51 AICNCVKQVLAESKVDPNS-VKGIGFDAT-CSLVVLTH-DGEPLPVSKNGGADQNIILWMDHRALAEAEKINATN-HNLL 126 (541)
T ss_pred HHHHHHHHHHHHcCCChhh-eEEEEeccc-ccceEEcC-CCCeeecCCCCCcccceeEeecCcHHHHHHHHHHHH-HHHH
Confidence 34455555433 3556677 999999999 99999999 99999 8999999999999998764222 4688
Q ss_pred HHhCCCCCcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhcccccc---CCCCCC
Q 036892 74 EAVGLPISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMN---LKTLDW 150 (447)
Q Consensus 74 ~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d---~~~~~W 150 (447)
++||+++++.++++||+|+++|+|++++++++ |++++|||.|+||| ++++|+++++.+++|| +++++|
T Consensus 127 ~~tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~~~as~~~~~d~~d~~~~~W 197 (541)
T TIGR01315 127 RYVGGKMSVEMEIPKVLWLKNNMPPELFARCK----FFDLTDFLTWRATG-----KEIRSFCSVVCKWGFVPVDGSNKGW 197 (541)
T ss_pred HHhCCeeCcchhHHHHHHHHHhChHHHHHhhh----hcchhhhheeeeec-----chhHhHhHHhHhhhccccccccCCC
Confidence 99999999999999999999999999999985 99999999999999 8999999999988888 699999
Q ss_pred ChHHHhhcCCCC---CCC----CCcccCCceeee-ec------cCCCCCCCcEEeccchhHHhhhcCC---C-CCC----
Q 036892 151 DKPTLETLGIPA---EIL----PKTFSNSEIIGK-LG------KGWPITGIPISGCLGDHHAAMLGQA---C-KKG---- 208 (447)
Q Consensus 151 ~~~~l~~lgi~~---~~l----P~i~~~g~~iG~-l~------~g~l~~g~pV~~g~gD~~aa~lg~g---~-~~g---- 208 (447)
++++++.+||+. ++| |+++++++++|+ |+ +| |++|+||++|++|++|+++|+| . ++|
T Consensus 198 ~~ell~~~Gi~~~~~~~l~~~lp~i~~~~~~~G~~v~~~~A~~~G-L~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~ 276 (541)
T TIGR01315 198 QEDFYETIGLGELVTDNFIRMGGSWMSPGELVGGGLTAEAAQELG-LPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQ 276 (541)
T ss_pred CHHHHHHcCChhhhhccccccCCcccCCCcccccccCHHHHHHhC-CCCCCeEeechHhhhccccccccccccccccccC
Confidence 999999999994 234 999999999998 84 68 8899999999999999999995 3 666
Q ss_pred ---cEEEEecccceeccccCccccccCCCceeee-ccccCCCCCCceeecccccchHHHHHHHHHHcCCC----------
Q 036892 209 ---EVKSTYGTGAFILLNTGEEVVKSKHELLSTL-AFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVI---------- 274 (447)
Q Consensus 209 ---~~~~s~GTs~~i~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~---------- 274 (447)
++.+++|||+++..+. ++|..++ +.+..+ ++ ..|+.|.++++++++|.+++|+++.+...
T Consensus 277 ~~~~~~~~~GTs~~~~~~~-~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~ 350 (541)
T TIGR01315 277 AFTRLAAVAGTSTCHMAMT-KGPVFVP-GVWGPYRDA----LIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAA 350 (541)
T ss_pred CCCcEEEEecCceEEEEec-CCCccCC-ceeecccCc----cCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhc
Confidence 8889999998876554 4454433 222212 22 24778999999999999999999976411
Q ss_pred --CCHHHHH----HHHHhcCC-------CC------------------------------CH---HHHHHHHHHHHHHHH
Q 036892 275 --SSASEIE----ELALQVHK-------QG------------------------------SQ---LHIARAVLESMCFQV 308 (447)
Q Consensus 275 --~~~~~l~----~~a~~~~~-------~g------------------------------~~---~~l~rAvlEgia~~~ 308 (447)
+.|+.|+ +++.+.++ +| ++ .||+||++|||+|++
T Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gl~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~ 430 (541)
T TIGR01315 351 GKNIYDYLNEHLKEMAAKTNAPSISYLVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGT 430 (541)
T ss_pred cCcHHHHHHHHHHHhhhhcccCccccCCCceEEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 2354443 34544432 22 56 899999999999999
Q ss_pred HHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCCccHHHHH
Q 036892 309 KDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAA 388 (447)
Q Consensus 309 ~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaA 388 (447)
|++++.|++ .|.+ +++|+++||+++|++|+ | |+||++|+||++++..|++++|||
T Consensus 431 r~~~e~l~~-~g~~------~~~i~~~GGga~s~~w~-Q-----------------i~ADvlg~pV~~~~~~e~~alGaA 485 (541)
T TIGR01315 431 RQIVEAMNT-AGHT------IKSIFMSGGQCQNPLLM-Q-----------------LIADACDMPVLIPYVNEAVLHGAA 485 (541)
T ss_pred HHHHHHHHH-cCCC------ccEEEEecCcccCHHHH-H-----------------HHHHHHCCeeEecChhHHHHHHHH
Confidence 999999987 5777 79999999999999999 9 999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHhcccccCCCcEEeCCCCHH-HHH-HHHHHHHHHHHHHhhh
Q 036892 389 FAAGLAIGVFKEEEIFASGERTKTSTTFKPVLNEE-FRK-KKAESWCRAVERIFNL 442 (447)
Q Consensus 389 llA~~~~g~~~~~~~a~~~~~~~~~~~~~P~~~~~-~~~-~~y~~~~~~~~~~~~~ 442 (447)
|+|++++|.|++++++.+.+++ ..++|+|+++++ +.| ++|++|+++|+++.+|
T Consensus 486 ~lA~~~~G~~~~~~~a~~~~~~-~~~~~~P~~~~~~~~Y~~~y~~y~~l~~~~~~~ 540 (541)
T TIGR01315 486 MLGAKAAGTTESLWDAMDRMSK-PGKTVWPRGDPAKKLHDRKYEIFLQLARTQQEY 540 (541)
T ss_pred HHHHHhcCccCCHHHHHHHhcc-CCcEEcCCcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988777766 578999999998 877 5799999999888776
No 12
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=100.00 E-value=1.5e-66 Score=556.55 Aligned_cols=397 Identities=17% Similarity=0.174 Sum_probs=337.2
Q ss_pred HHHHHHHHHHh-CCCCCCCCeeEEEEcCcccceEEEeCCCCccccc-----------ccccccCCcHHHHHcccc-C--C
Q 036892 4 CMAKALDKATA-DGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYN-----------AIVWMDARNSSEIGEGII-W--G 68 (447)
Q Consensus 4 ~i~~~~~~~~~-~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~-----------~i~W~D~R~~~~~~~~~~-~--~ 68 (447)
++.++++++.+ .+..+++ |++|++|+|+||+|+||+ +|+||+| +|+|+|.|+.++++++.+ . .
T Consensus 64 ~~~~~~~~~~~~~~~~~~~-I~aI~~s~q~~s~v~~D~-~g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l~~~~~~~ 141 (536)
T TIGR01234 64 VLEAAIPTVLAELGVDPAD-VVGIGVDFTACTPAPIDS-DGNPLCLLPEFAENPHAYFKLWKHHAAQEEADRINRLAHAP 141 (536)
T ss_pred HHHHHHHHHHHHcCCCHHH-EEEEEEecCcceeEEECC-CCCEeecccccccCcccceeeeccCCcHHHHHHHHHHhhcc
Confidence 34444444432 2455677 999999999999999999 9999983 999999999999986642 2 2
Q ss_pred hHHHHHHhCCCCCcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCC
Q 036892 69 KTHFLEAVGLPISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTL 148 (447)
Q Consensus 69 ~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~ 148 (447)
.+.++++||.++++.++++||+|+++|+|++++++++ |++++|||.|+||| +.++|+|+++.+++++..-+
T Consensus 142 ~~~~~~~tG~~~~~~~~~~kl~Wl~~~~pe~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~s~a~~~~l~~~~w~ 212 (536)
T TIGR01234 142 GEVDLSRYGGIISSEWFWAKILQITEEDPAIYQAADR----WIELADWIVAQLSG-----DIRRGRCTAGYKALWHESWG 212 (536)
T ss_pred chhHHHhhCCccCchhHHHHHHHHHhhChHHHHHHhh----hcCHHHHHHHHHhC-----Cccccchhcccceecccccc
Confidence 3577899999999999999999999999999999986 99999999999999 89999999999988876555
Q ss_pred CCChHHHhhcCC------CCCCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEEEec
Q 036892 149 DWDKPTLETLGI------PAEILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYG 215 (447)
Q Consensus 149 ~W~~~~l~~lgi------~~~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~G 215 (447)
.|++++++.+|+ ++++||+++++++++|+|+ +| |++|+||++|++|++|+++|+|+ ++|++++++|
T Consensus 213 ~~~~~~l~~~g~~~~~~lp~~~~p~i~~~g~~~G~v~~~~A~~~G-L~~g~pV~~g~~D~~aa~~g~g~~~~g~~~~~~G 291 (536)
T TIGR01234 213 YPSASFFDELNPILNRHLPDKLFTDIWTAGEPAGTLTPEWAQRTG-LPEGVVVAVGNFDAHVGAVAAGIAQPGALVKIMG 291 (536)
T ss_pred CCCHHHHHHhcchhhhhhhhhcCCceecCCCcccccCHHHHHHhC-CCCCCeEEecchhHhhhhhccccccCCcEEEEEc
Confidence 559999999995 7899999999999999994 67 88999999999999999999999 9999999999
Q ss_pred ccceeccccCccccccCCCceeeecccc-CCCCCCceeecccccchHHHHHHHHHHcCCC-----------CCHHHHHHH
Q 036892 216 TGAFILLNTGEEVVKSKHELLSTLAFKL-GPKAPTNYALEGSVAIAGAAVQWLRDSLGVI-----------SSASEIEEL 283 (447)
Q Consensus 216 Ts~~i~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~-----------~~~~~l~~~ 283 (447)
||.++..+. +++.. ..+ +++.. +...++.|.++++++++|.+++|+++.++.. ..|+.|++.
T Consensus 292 Ts~~~~~~~-~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 365 (536)
T TIGR01234 292 TSTCHVLIG-DKQRA-VPG----MCGVVDGGIVPGFIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEA 365 (536)
T ss_pred cceEEEEec-Ccccc-CCc----eeeeccCcccCCeeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHH
Confidence 998876554 43332 222 22221 1134678999999999999999999987421 237888888
Q ss_pred HHhcCCCC--------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccE
Q 036892 284 ALQVHKQG--------------------------------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFL 331 (447)
Q Consensus 284 a~~~~~~g--------------------------------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~ 331 (447)
+.+.|++. ++.||+|||+|||+|.+|++++.|++ .|.+ +++
T Consensus 366 a~~~p~g~~gllflP~l~Ger~P~~d~~arG~~~Gl~~~~~~~~~~RAvlEgia~~~~~~l~~l~~-~g~~------~~~ 438 (536)
T TIGR01234 366 AAKQPSGEHGLVALDWFNGNRSPLVDQRLKGVITGLTLATDAPLLYRALIEATAFGTRMIMETFTD-SGVP------VEE 438 (536)
T ss_pred HHhCCCCCCCeEecchhccCCCCCCCCcceEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC------cce
Confidence 88776531 79999999999999999999999986 6777 799
Q ss_pred EEEeccc-cccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhccccc
Q 036892 332 LRVDGAI-DANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERT 410 (447)
Q Consensus 332 i~~~GG~-s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~ 410 (447)
|+++||+ ++|++|+ | |+||++|+||+++...|++++|||++|++++|.+++++++.+.++.
T Consensus 439 i~~~GGg~a~s~~w~-Q-----------------i~Adv~g~pV~~~~~~e~~a~GaA~lA~~~~G~~~~~~~~~~~~~~ 500 (536)
T TIGR01234 439 LMAAGGIARKNPVIM-Q-----------------IYADVTNRPLQIVASDQAPALGAAIFAAVAAGVYADIPSAQAKMGS 500 (536)
T ss_pred EEEeCCccccCHHHH-H-----------------HHHHhhCCeeEeccCCcchhHHHHHHHHHHcCCcCCHHHHHHHhhc
Confidence 9999999 9999999 9 9999999999999999999999999999999999999988777652
Q ss_pred CCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhhhh
Q 036892 411 KTSTTFKPVLNEEFRK-KKAESWCRAVERIFNLA 443 (447)
Q Consensus 411 ~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~~~ 443 (447)
...++|+|++++++.| ++|++|+++|++.-.|+
T Consensus 501 ~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~~~~~ 534 (536)
T TIGR01234 501 AVEKTLTPCSENAQRYEQLYARYQELAMSFGQYN 534 (536)
T ss_pred cCCceECCChhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 2478899999998877 57999999999977765
No 13
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=100.00 E-value=1.1e-66 Score=548.62 Aligned_cols=376 Identities=22% Similarity=0.292 Sum_probs=318.8
Q ss_pred HHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHcccc-CChHHHHHHhCCCCC
Q 036892 3 VCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGII-WGKTHFLEAVGLPIS 81 (447)
Q Consensus 3 ~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~-~~~~~~~~~tG~~~~ 81 (447)
+++.++++++.+. ..+++ |++|++|+|++++++||+ +|+||+|+|+|+|+|+.++++++.. .+.+.++++||.++.
T Consensus 53 ~~~~~~~~~l~~~-~~~~~-I~aI~~s~~~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~ 129 (465)
T TIGR02628 53 QKLADCCQQINSE-LTEKH-IRGIAVTTFGVDGAPFDK-QGNQLYPIISWKCPRTAPVMDNIERLLDAQRLYAINGIGAY 129 (465)
T ss_pred HHHHHHHHHHHhh-cChhc-eEEEEEeccccceEEECC-CCCCccccccccCcccHHHHHHHHHhhCHHHHHHHhCCCcc
Confidence 3556666666542 44567 999999999999999999 9999999999999999999986542 345678999999999
Q ss_pred cccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcCCC
Q 036892 82 TCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP 161 (447)
Q Consensus 82 ~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lgi~ 161 (447)
+.++++||+|+++|+|++|+++++ |++++|||.|+||| ++++|+|+||+|++||+++++|++++++.+||+
T Consensus 130 ~~~~~~kl~wl~~~~pe~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~w~~ell~~~gi~ 200 (465)
T TIGR02628 130 SFNTLYKLVWLKEHHPQLFERMHK----FVFISSMITHRLTG-----EFTTDITMAGTSMMTDLTQRNWSPQILQALGLS 200 (465)
T ss_pred ccchHHHHHHHHHhChHHHHHHHH----hhCcHHHHHHHHhC-----CcccchhhhhcceeeecCcCCCCHHHHHHcCCC
Confidence 999999999999999999999986 99999999999999 899999999999999999999999999999999
Q ss_pred CCCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCCCCCcEEEEecccceeccccCccccccCCCc
Q 036892 162 AEILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQACKKGEVKSTYGTGAFILLNTGEEVVKSKHEL 235 (447)
Q Consensus 162 ~~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~ 235 (447)
+++||+++++++++|+|+ +| |++|+||++|++|++++++|+|+.+|++++++|||+++...+ ++|..+..+.
T Consensus 201 ~~~lP~l~~~~~~~G~v~~~~a~~~G-l~~g~pV~~g~~D~~aa~~g~g~~~g~~~~~~GTs~~~~~~~-~~~~~~~~~~ 278 (465)
T TIGR02628 201 RRLFPPLVEAGEQIGTLQNSAAAMLG-LPVGVPVISAGHDTQFALFGSGAEQNQPVLSSGTWEILMARS-QQVDTSLLSQ 278 (465)
T ss_pred HHHCCCcccCCccceeeCHHHHHHhC-CCCCCCEEecCccHHHHHhccCCCCCcEEEeccchhhheecc-CcCCCCcccc
Confidence 999999999999999994 57 789999999999999999999998899999999999875554 4555444433
Q ss_pred eeeeccccCCCCCCceeecccccchHHHHHHHHHHcCCC----CC-HHHHHHHHHhcCCC--C-----------------
Q 036892 236 LSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVI----SS-ASEIEELALQVHKQ--G----------------- 291 (447)
Q Consensus 236 ~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~----~~-~~~l~~~a~~~~~~--g----------------- 291 (447)
...+.+... ..++.|...+....+| +++|+++.+... .+ |++|++.+++++++ +
T Consensus 279 ~~~~~~~~~-~~~g~~~~~~~~~~g~-~~~W~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~~~~p~~~~~a~g~~~ 356 (465)
T TIGR02628 279 YAGSTCELD-SQAGLYNPAMQWLASG-VLEWVRKLFFTAETPSDHYYQMMIEEARLIANGADGVVNFQCDLLSCGQGGIQ 356 (465)
T ss_pred ccccccccc-cCCceeeehhhhhhhh-HHHHHHHHhcchhhccccHHHHHHHHHHhCCCCCCcceeecccCCcccceeEE
Confidence 222222111 2356676655455445 899999976421 12 68899888877642 1
Q ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhh
Q 036892 292 ------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECR 365 (447)
Q Consensus 292 ------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~ 365 (447)
+++||+||++|||+|.+|++++.|++..+.+ +++|+++||+++|++|+ | |
T Consensus 357 Gl~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~~------~~~i~~~GGga~s~~w~-Q-----------------i 412 (465)
T TIGR02628 357 GLTLNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQFK------ASELLLVGGGSKNTLWN-Q-----------------I 412 (465)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------cceEEEecCccCCHHHH-H-----------------H
Confidence 7999999999999999999999998733456 79999999999999999 9 9
Q ss_pred hhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccccCCCcEEeCC
Q 036892 366 SADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERTKTSTTFKPV 419 (447)
Q Consensus 366 ~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~~~~~~~P~ 419 (447)
+||++|+||++++..|++++|||++|++++|.|++++++.+.+++ ..++|+|+
T Consensus 413 ~Adv~g~pV~~~~~~e~~~lGaA~~a~~a~G~~~~~~~a~~~~~~-~~~~~~P~ 465 (465)
T TIGR02628 413 RANMLDIPVKVVDDAETTVAGAAMFGFYGVGEYNSPEEAQAQMHP-QYRYFYPQ 465 (465)
T ss_pred hhhhcCCeeEeccCCcchHHHHHHHHHHhcCccCCHHHHHHHhhc-cceeeCCC
Confidence 999999999999999999999999999999999999998777765 46789995
No 14
>PRK04123 ribulokinase; Provisional
Probab=100.00 E-value=8.7e-66 Score=552.15 Aligned_cols=396 Identities=19% Similarity=0.210 Sum_probs=334.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEEeCCCCcccc-----------cccccccCCcHHHHHcccc-C--C
Q 036892 3 VCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLY-----------NAIVWMDARNSSEIGEGII-W--G 68 (447)
Q Consensus 3 ~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~-----------~~i~W~D~R~~~~~~~~~~-~--~ 68 (447)
++|++++++ .+.++.+ |.+||||+|++++++||+ +|+||+ |+|+|+|.|+.++++++.. . .
T Consensus 64 ~~i~~~~~~---~~~~~~~-I~aIgis~~~~~~v~~D~-~G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l~~~~~~~ 138 (548)
T PRK04123 64 AAIPAVLKE---AGVDPAA-VVGIGVDFTGSTPAPVDA-DGTPLALLPEFAENPHAMVKLWKDHTAQEEAEEINRLAHER 138 (548)
T ss_pred HHHHHHHHH---cCCChhh-EEEEEEecccceeEEECC-CCCEeecccccccCcccceeEeccCCHHHHHHHHHHHhccc
Confidence 344444443 3556677 999999999999999999 999998 9999999999999986642 2 2
Q ss_pred hHHHHHHh-CCCCCcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCC-
Q 036892 69 KTHFLEAV-GLPISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLK- 146 (447)
Q Consensus 69 ~~~~~~~t-G~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~- 146 (447)
.+.+++.+ |.++++.++++||+|+++|+|++++++++ |++++|||.|+|||........+|+|+++.+++||.+
T Consensus 139 ~~~~~~~~~g~~~~~~~~~~kl~Wl~~~~P~~~~~~~~----~l~~~dyl~~~LTG~~~~~~~~~~~~~as~~~~~d~~~ 214 (548)
T PRK04123 139 GEADLSRYIGGIYSSEWFWAKILHVLREDPAVYEAAAS----WVEACDWVVALLTGTTDPQDIVRSRCAAGHKALWHESW 214 (548)
T ss_pred hhhHHHHhcCCccCcchHHHHHHHHHhhCHHHHHHHhH----hccHHHHHHHHHhCCCCccccccchhhccccccccccc
Confidence 24577655 99999999999999999999999999986 9999999999999942111456899999999999998
Q ss_pred CCCCChHHHhhcC------CCCCCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCCCCCcEEEEe
Q 036892 147 TLDWDKPTLETLG------IPAEILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQACKKGEVKSTY 214 (447)
Q Consensus 147 ~~~W~~~~l~~lg------i~~~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~~~g~~~~s~ 214 (447)
+..|++++++.+| |++++||+++++++++|+|+ +| |++|+||++|+||++|+++|+|+++|++++++
T Consensus 215 ~~~~s~ell~~~g~~l~~~i~~~llP~l~~~g~~~G~v~~~~a~~~G-L~~g~pV~~g~~D~~aa~~G~g~~~g~~~~~~ 293 (548)
T PRK04123 215 GGLPSADFFDALDPLLARGLRDKLFTETWTAGEPAGTLTAEWAQRLG-LPEGVAVSVGAFDAHMGAVGAGAEPGTLVKVM 293 (548)
T ss_pred CCCCCHHHHHHhccchhhhhHhhcCCccccCCCcccccCHHHHHHhC-CCCCCeEEecchhhhhhhcccCcCCCcEEEEe
Confidence 5666999999996 88999999999999999994 57 88999999999999999999999889999999
Q ss_pred cccceeccccCccccccCCCceeeecccc-CCCCCCceeecccccchHHHHHHHHHHcCC-----------CCCHHHHHH
Q 036892 215 GTGAFILLNTGEEVVKSKHELLSTLAFKL-GPKAPTNYALEGSVAIAGAAVQWLRDSLGV-----------ISSASEIEE 282 (447)
Q Consensus 215 GTs~~i~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~-----------~~~~~~l~~ 282 (447)
||++++..++ +++.. ..++ ++.. +...++.|.++++++++|.+++|+++.++. ...|++|++
T Consensus 294 GTs~~~~~~~-~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~ 367 (548)
T PRK04123 294 GTSTCDILLA-DKQRA-VPGI----CGQVDGSIVPGLIGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTE 367 (548)
T ss_pred cCceEEEEec-CCccc-cCce----eecccCcccCCeeeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHH
Confidence 9999876555 44432 1222 2211 123467899999999999999999998742 134788999
Q ss_pred HHHhcCCCC--------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcc
Q 036892 283 LALQVHKQG--------------------------------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKF 330 (447)
Q Consensus 283 ~a~~~~~~g--------------------------------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~ 330 (447)
+++++|++. +++||+|||+|||+|.+|++++.|++ .|.+ ++
T Consensus 368 ~a~~~~~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l~~-~g~~------~~ 440 (548)
T PRK04123 368 AAAKQPPGEHGLVALDWFNGRRTPLADQRLKGVITGLTLGTDAPDIYRALIEATAFGTRAIMECFED-QGVP------VE 440 (548)
T ss_pred HHHhcCCCCCceEEcccccCCCCCCCCCCCceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC------cc
Confidence 888776531 79999999999999999999999987 5776 79
Q ss_pred EEEEeccc-cccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccc
Q 036892 331 LLRVDGAI-DANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGER 409 (447)
Q Consensus 331 ~i~~~GG~-s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~ 409 (447)
+|+++||+ ++|++|+ | |+||++|+||+++...|++++|||++|++++|.+++++++...++
T Consensus 441 ~i~~~GGg~s~s~~w~-Q-----------------i~ADv~g~pV~~~~~~e~~alGaA~lA~~~~G~~~~~~~~~~~~~ 502 (548)
T PRK04123 441 EVIAAGGIARKNPVLM-Q-----------------IYADVLNRPIQVVASDQCPALGAAIFAAVAAGAYPDIPEAQQAMA 502 (548)
T ss_pred eEEEeCCCcccCHHHH-H-----------------HHHHhcCCceEecCccccchHHHHHHHHHHhccCCCHHHHHHHhh
Confidence 99999999 9999999 9 999999999999999999999999999999999999998877765
Q ss_pred cCCCcEEeCCCCHHHHH-HHHHHHHHHHHHH
Q 036892 410 TKTSTTFKPVLNEEFRK-KKAESWCRAVERI 439 (447)
Q Consensus 410 ~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~ 439 (447)
....++|+|+++.++.| ++|++|+++++.+
T Consensus 503 ~~~~~~~~P~~~~~~~y~~~y~~y~~l~~~~ 533 (548)
T PRK04123 503 SPVEKTYQPDPENVARYEQLYQEYKQLHDYF 533 (548)
T ss_pred ccCceEEecCHHHHHHHHHHHHHHHHHHHHh
Confidence 33457899999998877 5799999999876
No 15
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=100.00 E-value=4.7e-66 Score=544.36 Aligned_cols=387 Identities=19% Similarity=0.228 Sum_probs=322.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHcccc-CChHHHHHHhCCCC
Q 036892 2 RVCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGII-WGKTHFLEAVGLPI 80 (447)
Q Consensus 2 ~~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~-~~~~~~~~~tG~~~ 80 (447)
+++|+++++++.. ..++ |.+||||+|++++++||+ +|+||+|+|+|+|.|+.+++++... .+.+.+|++||+++
T Consensus 39 ~~~i~~~l~~~~~---~~~~-I~~Igis~q~~~~v~lD~-~G~pL~pai~w~D~Ra~~~~~~l~~~~~~~~~~~~tG~~~ 113 (471)
T PRK10640 39 ESAIRLGLNKVCE---EGIR-IDSIGIDTWGVDYVLLDK-QGQRVGLPVSYRDSRTDGVMAQAQQQLGKRDIYRRSGIQF 113 (471)
T ss_pred HHHHHHHHHHHhh---cCCC-ccEEEEcCCcccEEEECC-CCCCcCCceeccCCCCHHHHHHHHHhcCHHHHHHHhCCCC
Confidence 4577777777643 3466 999999999999999999 9999999999999999999986542 45678899999999
Q ss_pred CcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcCC
Q 036892 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGI 160 (447)
Q Consensus 81 ~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lgi 160 (447)
.+.++++||+|+++|+|++|+++++ |++++|||.|+||| ++++|+|+||+|++||+++++|++++++.+||
T Consensus 114 ~~~~~~~kl~Wl~~~~P~~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~s~as~t~l~d~~~~~W~~ell~~~Gi 184 (471)
T PRK10640 114 LPFNTLYQLRALTEQQPELIAQVAH----ALLIPDYFSYRLTG-----KMNWEYTNATTTQLVNINSDDWDESLLAWSGA 184 (471)
T ss_pred CCccHHHHHHHHHHhChHHHHHhhH----eecHHHHHHHHHhC-----CcceeecHhhhccccCCCcCCcCHHHHHHcCC
Confidence 9999999999999999999999986 99999999999999 89999999999999999999999999999999
Q ss_pred CCCCCCCcccCCceeeeeccCCCCCCCcEEe-ccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccCCCceee
Q 036892 161 PAEILPKTFSNSEIIGKLGKGWPITGIPISG-CLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLST 238 (447)
Q Consensus 161 ~~~~lP~i~~~g~~iG~l~~g~l~~g~pV~~-g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~~~~ 238 (447)
++++||+++++++++|.+... +..|+||++ |+||++|+++|+|+ ++|++++++|||+++...+ ++|..++.+....
T Consensus 185 ~~~~LP~lv~~~~~~G~v~~~-~g~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~GT~~~~~~~~-~~p~~~~~~~~~~ 262 (471)
T PRK10640 185 PKAWFGRPTHPGNVIGHWICP-QGNEIPVVAVASHDTASAVIASPLNDSDAAYLSSGTWSLMGFES-QTPFTNDTALAAN 262 (471)
T ss_pred CHHHcCCCcCCCccceeeecc-cCCCCCEEEeCCCcHHHHhhccCCCCCCeEEEEeccHhhhheec-CCCcCCHHHHHhc
Confidence 999999999999999998643 237999998 68999999999999 9999999999999876655 4555443322111
Q ss_pred eccccCCCCCCceeecccccchHHHHHHHHHHcCC---CCCHHHHHHHHHhcCC-------CC-----------------
Q 036892 239 LAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGV---ISSASEIEELALQVHK-------QG----------------- 291 (447)
Q Consensus 239 ~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~---~~~~~~l~~~a~~~~~-------~g----------------- 291 (447)
+.+ .+ ..++.|.+.+.+. | .|+++.++. ..+|+++.+++.++|. .|
T Consensus 263 ~~~-~~-~~~g~~~~~~~~~--g---~W~~~~~~~~~~~~~~~~l~~~a~~~~g~~gli~p~ger~~~~~~arg~~~gl~ 335 (471)
T PRK10640 263 ITN-EG-GAEGRYRVLKNIM--G---LWLLQRVLQERQITDLPALIAATAALPACRFLINPNDDRFINPPSMCSEIQAAC 335 (471)
T ss_pred cCc-cC-CCCceEEEecchh--H---HHHHHHHHHHhccCCHHHHHHHHHhCCCCCceeCCCcccccCchhhHHHHHHHH
Confidence 111 11 2466776665332 4 899997641 2357788777665431 11
Q ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccc
Q 036892 292 ---------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYF 362 (447)
Q Consensus 292 ---------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~ 362 (447)
+++||+|||+||++|.+|++++.|++..+.+ +++|+++||+++|++|+ |
T Consensus 336 ~~~G~~~~~~~~~l~RAvlEgva~~~r~~l~~l~~~~g~~------~~~i~~~GGga~s~~w~-Q--------------- 393 (471)
T PRK10640 336 RETAQPVPESDAELARCIFDSLALLYADVLHELAQLRGEP------FSQLHIVGGGCQNALLN-Q--------------- 393 (471)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cceEEEECChhhhHHHH-H---------------
Confidence 6889999999999999999999998744666 79999999999999999 9
Q ss_pred hhhhhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhcccccC--CCcEEeCCCCHHHHHHHHHHHHHHHHH
Q 036892 363 ECRSADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFASGERTK--TSTTFKPVLNEEFRKKKAESWCRAVER 438 (447)
Q Consensus 363 ~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~~~~~~--~~~~~~P~~~~~~~~~~y~~~~~~~~~ 438 (447)
|+||++|+||.+.+. |++++|||++|++++|.+++++++ .+++.. ..++|+|+++ ..+.++|.+|+++++.
T Consensus 394 --i~ADvlg~pV~~~~~-ea~alGaa~~a~~a~G~~~~~~~~-~~~~~~~~~~~~~~P~~~-~~~~~~~~~~~~~~~~ 466 (471)
T PRK10640 394 --LCADACGIRVIAGPV-EASTLGNIGIQLMTLDELNNVDDF-RQVVSTNFPLTTFTPNPD-SEIARHVAQFQSLRQT 466 (471)
T ss_pred --HHHHHhCCCeeeCCh-hHHHHHHHHHHHHHcCCcCCHHHH-HHHHHhcCCceEEcCCCh-HHHHHHHHHHHHHhcc
Confidence 999999999988775 899999999999999999999988 445441 3579999988 4555688888888764
No 16
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-64 Score=537.56 Aligned_cols=397 Identities=30% Similarity=0.415 Sum_probs=337.6
Q ss_pred HHHHHHHHHHh-CCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHcccc-CChHHHHHHhCCCCC
Q 036892 4 CMAKALDKATA-DGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGII-WGKTHFLEAVGLPIS 81 (447)
Q Consensus 4 ~i~~~~~~~~~-~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~-~~~~~~~~~tG~~~~ 81 (447)
++.++++++.+ ..+.+++ |.||+||+|||+++++|+ +|+||+|+|+|+|.|+.++++++.. .+.+..+..||+++.
T Consensus 56 ~~~~ai~~l~~~~~~~~~~-I~aI~is~~~~g~vllD~-~g~~L~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~t~~~~~ 133 (502)
T COG1070 56 AILEALRQLLEESKIDPDA-IAAIGISGQGHGLVLLDA-NGEPLRPAILWNDTRAAEEVEELEERLGGEALYARTGLQAM 133 (502)
T ss_pred HHHHHHHHHHHhcccChhh-ceEEEEeccccceEEECC-CCCCccccceecchhhHHHHHHHHhhccchhhhhhcCCCcC
Confidence 45556666544 2367788 999999999999999999 9999999999999999999996642 455677788999999
Q ss_pred cccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcCCC
Q 036892 82 TCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP 161 (447)
Q Consensus 82 ~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lgi~ 161 (447)
+.++++||+|+++|+||+|+|+++ |++++|||.|+||| ++++|+|+|++|++||+++++|+.++|+.+|++
T Consensus 134 ~~~t~~kL~Wl~~~~P~~~~k~~~----il~~~dyl~~rLTG-----~~~~e~s~as~t~l~d~~~~~w~~~~l~~~gl~ 204 (502)
T COG1070 134 PGFTAPKLLWLKENEPDLFAKAAK----ILLIKDYLRYRLTG-----EFATEISDASGTGLLDIRTRKWDWELLAALGLP 204 (502)
T ss_pred ccccHHHHHHHHhcCcHHHHhhhh----eechHHHHHHHHhC-----CcccccccccccccccccccccCHHHHHHcCCC
Confidence 999999999999999999999996 99999999999999 999999999999999999999999999999999
Q ss_pred C-CCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccCC
Q 036892 162 A-EILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKH 233 (447)
Q Consensus 162 ~-~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~~ 233 (447)
+ ++||+++.+++++|+|+ +| +++|+||++|+||++++++|+|. ++|++..++||+.++...+ +++..++.
T Consensus 205 ~~~~lp~vv~~g~~~G~l~~e~A~~~G-l~~~~pV~~G~~D~~~a~lg~g~~~~g~~~~~~gts~~~~~~~-~~~~~~~~ 282 (502)
T COG1070 205 ERDLLPPVVEPGEVLGTLTPEAAEELG-LPAGTPVVVGGGDNAAAALGAGAVDPGDVSSSTGTSGVVRAAT-DKPLDDPR 282 (502)
T ss_pred hHHhCCCccCccceeccccHHHHHHhC-CCCCCeEEECCchHHHHhccCCCcCCCcEEEEeccccEEeeec-cccccCCc
Confidence 5 99999999999999994 68 88999999999999999999999 9999999999999887666 44555555
Q ss_pred CceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcC--CCC--------------------
Q 036892 234 ELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVISSASEIEELALQVH--KQG-------------------- 291 (447)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~--~~g-------------------- 291 (447)
+...++++. .++.|..++.++++|.+++|+++.++...++.++...+...+ ++.
T Consensus 283 ~~~~~~~~~----~~~~~~~~~~~~~~~~~l~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~p~l~~er~p~~~~~ 358 (502)
T COG1070 283 GSIYTFCLG----LPGWFIVMGANNTGGWLLEWLRELFGLAESYPELLEEALAVPAPAGAIGLLFLPYLSGERGPHADPA 358 (502)
T ss_pred cceeeeccc----CCCeEEEEEEecccHHHHHHHHHHhccccCcHHHHHHHHhccCCCCCCCcEEeccccCCcCCCCCcc
Confidence 554444432 477888889999999999999999876434444433332222 210
Q ss_pred ------------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCcccc
Q 036892 292 ------------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSF 359 (447)
Q Consensus 292 ------------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~ 359 (447)
+++|++||++||++|.+++.++.|++..|.+ +++|+++||+++|++|+ |
T Consensus 359 ~r~~~~g~~~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~------~~~i~~~GGgars~~w~-Q------------ 419 (502)
T COG1070 359 ARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEELGGKP------PSRVRVVGGGARSPLWL-Q------------ 419 (502)
T ss_pred ceeEEEccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------ccEEEEECCcccCHHHH-H------------
Confidence 8999999999999999999999999866877 78999999999999999 9
Q ss_pred ccchhhhhhccCCceeecCCCCccHHHHHHHHHHhcCCC-CCHHHHhcccccCCCcEEeCCCCHHHHH-HHHHHHHHHHH
Q 036892 360 SYFECRSADLLGSPVIRPADIETTALGAAFAAGLAIGVF-KEEEIFASGERTKTSTTFKPVLNEEFRK-KKAESWCRAVE 437 (447)
Q Consensus 360 ~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~-~~~~~a~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~ 437 (447)
|+||++|+||.++...|++++|+|++++.+.+.+ +..+++.+.+.. .+++.|++++.+.| ++|++|++.|+
T Consensus 420 -----i~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~y~~~~~~~~~~y~ 492 (502)
T COG1070 420 -----ILADALGLPVVVPEVEEAGALGGAALAAAALGGIYDSAEGALKAVVD--ARRIIPDPERAAAYQELYERYRALYQ 492 (502)
T ss_pred -----HHHHHcCCeeEecCcccchHHHHHHHHHHHhCCCCccHHHHhhcccc--ccccCCChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888887654 444555443332 67899999998877 57899999999
Q ss_pred HHhhhh
Q 036892 438 RIFNLA 443 (447)
Q Consensus 438 ~~~~~~ 443 (447)
++....
T Consensus 493 ~~~~~~ 498 (502)
T COG1070 493 ALLALY 498 (502)
T ss_pred HHHHHH
Confidence 988754
No 17
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=100.00 E-value=5.6e-62 Score=511.60 Aligned_cols=356 Identities=21% Similarity=0.272 Sum_probs=298.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHccc-cCChHHHHHHhCCCC
Q 036892 2 RVCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGI-IWGKTHFLEAVGLPI 80 (447)
Q Consensus 2 ~~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~-~~~~~~~~~~tG~~~ 80 (447)
+++++++++++... ..+ |++|+||+|++++|+||+ +|+||+|+|+|+|.|+.++++++. ..+.+.++++||+++
T Consensus 51 ~~~~~~~l~~~~~~---~~~-i~~Igis~q~~~~v~~D~-~G~~l~p~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~ 125 (454)
T TIGR02627 51 EQEIRLGLNKVDAE---GIA-PDSIGIDTWGVDFVLLDQ-NGQRVGDPVSYRDSRTDGVMAQVQSELGKEAIYQRTGIQF 125 (454)
T ss_pred HHHHHHHHHHHhcc---CCC-ceEEEEeccceeEEEEcC-CCCCccCceecCCCCCHHHHHHHHhhcCHHHHHHHhCCCc
Confidence 46788888887542 356 999999999999999999 999999999999999999998654 245678999999999
Q ss_pred CcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcCC
Q 036892 81 STCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGI 160 (447)
Q Consensus 81 ~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lgi 160 (447)
.+.++++||+|+++|+|++|+++++ |++++|||.|+||| +.++|+|+||+|++||+++++|++++++.+||
T Consensus 126 ~~~~~~~kl~Wl~~~~P~~~~~~~~----~l~~~dyl~~~LTG-----~~~~d~s~As~t~l~d~~~~~W~~~ll~~~gi 196 (454)
T TIGR02627 126 LPFNTLYQLRALTEQQPDLLEKVAH----FLLIPDYLNYRLTG-----KKVWEYTNATTTQLVNINTDDWDEDLLAYLGV 196 (454)
T ss_pred CCccHHHHHHHHHHhChhHHHHHHH----hCCHHHHHHHheeC-----CceeeeehhhhcccccCCCCCcCHHHHHHcCC
Confidence 9999999999999999999999996 99999999999999 88999999999999999999999999999999
Q ss_pred CCCCCCCcccCCceeeeec-cCCCCCCCcEEe-ccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccCCCcee
Q 036892 161 PAEILPKTFSNSEIIGKLG-KGWPITGIPISG-CLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHELLS 237 (447)
Q Consensus 161 ~~~~lP~i~~~g~~iG~l~-~g~l~~g~pV~~-g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~~~ 237 (447)
++++||+++++++++|.+. .| + +|+||++ |+||++|+++|+|+ ++|++.+++|||+++...+ +.|..++.+...
T Consensus 197 ~~~~lP~l~~~~~~~G~~~~~g-l-~g~pVv~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~~~~~~-~~~~~~~~~~~~ 273 (454)
T TIGR02627 197 PAAWFGRPTHPGNVIGLWECPQ-G-NQIPVVAVATHDTASAVVAAPLQGENAAYLSSGTWSLMGFES-QTPITNEQALAA 273 (454)
T ss_pred CHHHcCCccCCCCeeEEeeccc-C-CCCCEEEECCchHHHHHhcCCCCCCCcEEEEEcHHHHhcccC-CCCCCCHHHHHh
Confidence 9999999999999999985 35 5 8999998 88999999999999 9999999999998876554 445444332111
Q ss_pred eeccccCCCCCCceeecccccchHHHHHHHHHHcCC---CCCHHHHHHHHHhcCCC------------------------
Q 036892 238 TLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGV---ISSASEIEELALQVHKQ------------------------ 290 (447)
Q Consensus 238 ~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~---~~~~~~l~~~a~~~~~~------------------------ 290 (447)
.+.+ ....++.|.+.+... ++ |+++.+.. ...|+++.+.+..+|+.
T Consensus 274 ~~~~--~~~~~~~~~~~~~~~-g~----W~~~~~~~~~~~~~~~~l~~~a~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~ 346 (454)
T TIGR02627 274 NITN--EGGADGRYRVLKNIM-GL----WLLQRVCRERDINDLPALIEQAQALPAFKSIINPNDDRFINPENMCEEIQAY 346 (454)
T ss_pred cccc--ccccccEEEeecchh-hh----HHHHHHHhhhccccHHHHHHHhcCCCCCCeeeCCCcccccChhhhHHHHHHH
Confidence 1111 112356676665443 34 66654421 23577777776665431
Q ss_pred ----C-----CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCcccccc
Q 036892 291 ----G-----SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSY 361 (447)
Q Consensus 291 ----g-----~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~ 361 (447)
| +++||+|||+|||+|.+|++++.|++..+.+ +++|+++||+++|++|+ |
T Consensus 347 ~~~~Gl~~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~~------~~~i~~~GGga~s~~w~-Q-------------- 405 (454)
T TIGR02627 347 CRETNQPIPESDAELARCIFDSLALLYRQVLLELAELRGKP------ISQLHIVGGGSQNAFLN-Q-------------- 405 (454)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------cCEEEEECChhhhHHHH-H--------------
Confidence 1 7899999999999999999999998744666 79999999999999999 9
Q ss_pred chhhhhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHHhc
Q 036892 362 FECRSADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIFAS 406 (447)
Q Consensus 362 ~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a~~ 406 (447)
|+||++|+||.+.. .|++++||||+|++++|.|++++++.+
T Consensus 406 ---i~ADvlg~pV~~~~-~e~~a~GaA~~a~~~~G~~~~~~~~~~ 446 (454)
T TIGR02627 406 ---LCADACGIRVIAGP-VEASTLGNIGVQLMALDEINDMAAFRQ 446 (454)
T ss_pred ---HHHHHhCCceEcCC-chHHHHHHHHHHHHhcCCcCCHHHHHH
Confidence 99999999998766 779999999999999999999988843
No 18
>PLN02669 xylulokinase
Probab=100.00 E-value=3.5e-61 Score=515.68 Aligned_cols=349 Identities=19% Similarity=0.224 Sum_probs=304.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEEeCCCCccc-------------------ccccccccCCcHHHHHc
Q 036892 3 VCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLWSKSTGCPL-------------------YNAIVWMDARNSSEIGE 63 (447)
Q Consensus 3 ~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl-------------------~~~i~W~D~R~~~~~~~ 63 (447)
+++..+++++.+++.+.++ |+||++|+|+||+|+||+.+|+|| +|+|+|+|.|+.+++++
T Consensus 71 ~al~~~l~~l~~~~~~~~~-I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~ 149 (556)
T PLN02669 71 EALDLLLQKLAKEKFPFHK-VVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCRE 149 (556)
T ss_pred HHHHHHHHHHHHcCCChhh-EEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHH
Confidence 5778888887766777788 999999999999999997458887 79999999999999986
Q ss_pred ccc-CC-hHHHHHHhCCCCCcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCce-Eeecchhhcc
Q 036892 64 GII-WG-KTHFLEAVGLPISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLH-VTDVSNASRT 140 (447)
Q Consensus 64 ~~~-~~-~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~-~~d~s~As~t 140 (447)
+.. .+ .+.++++||++.++.|+.+||+|+++|+||+|+++++ |+.++|||.++||| +. .+|+|+||++
T Consensus 150 l~~~~gg~~~l~~~tG~~~~~~~t~~ki~wl~~~~Pe~y~~t~~----i~~~~dyl~~~LtG-----~~~~~D~sdasg~ 220 (556)
T PLN02669 150 IEEAVGGAAELSKLTGSRAYERFTGPQIRKIYETQPEVYHDTER----ISLVSSFMASLLVG-----DYASIDETDGAGM 220 (556)
T ss_pred HHHHcCcHHHHHHHHCCcccccccHHHHHHHHHhChHHHHHHHh----hccHHHHHHHhhcC-----CCccccchhhhhh
Confidence 642 23 4678899999999999999999999999999999996 99999999999999 64 6999999999
Q ss_pred ccccCCCCCCChHHHhhcCCC-CCCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEE
Q 036892 141 MLMNLKTLDWDKPTLETLGIP-AEILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKS 212 (447)
Q Consensus 141 gl~d~~~~~W~~~~l~~lgi~-~~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~ 212 (447)
++||+++++|++++|+.+++. +++||+++++++++|+|+ +| |++|+||++|+||++|+++|+|+ ++|++.+
T Consensus 221 ~l~Di~~~~Ws~~ll~~~~~~l~~~Lp~~~~~~~~~G~v~~~~a~~~G-l~~g~pV~~g~gD~~a~~~G~g~~~~g~~~~ 299 (556)
T PLN02669 221 NLMDIEKRCWSKAALEATAPGLEEKLGKLAPAHAVAGKIHPYFVQRFG-FSSNCLVVQWSGDNPNSLAGLTLSTPGDLAI 299 (556)
T ss_pred hhhccccCCcCHHHHHhhCccHHHHCcCCCCCCcceeeeCHHHHHHhC-CCCCCEEEEecchHHHHHhccCCCCCCeEEE
Confidence 999999999999999999544 379999999999999994 68 89999999999999999999999 9999999
Q ss_pred EecccceeccccCccccccCCCceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--
Q 036892 213 TYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVISSASEIEELALQVHKQ-- 290 (447)
Q Consensus 213 s~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~-- 290 (447)
++|||.++.+++ +++..++.+.+ ++|. ..|+.|+.+++..++|.+++|+++.++. .+|+.+++++.+.|++
T Consensus 300 slGTs~~~~~~~-~~~~~~~~~~~--~~~~---~~~~~y~~~~~~~ngg~~~~w~r~~~~~-~~~~~~~~~~~~~~~g~~ 372 (556)
T PLN02669 300 SLGTSDTVFGIT-REPQPSLEGHV--FPNP---VDPESYMVMLCYKNGSLTREDIRNRCAD-GSWDVFNKLLEQTPPLNG 372 (556)
T ss_pred EEcccceEEEec-CCCCCCCCcce--eeCc---cCCCCeEEEEEecchHHHHHHHHHHhcc-CcHHHHHHHHHhCCCCCC
Confidence 999999887666 44554444322 4443 2478999999999999999999998852 4678888877665532
Q ss_pred C-------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 036892 291 G-------------------------------------------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKD 327 (447)
Q Consensus 291 g-------------------------------------------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~ 327 (447)
| ++.|++|||+||++|.+|.+++.|+ .+.+
T Consensus 373 g~l~~~~~~~e~~P~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~--~~~~----- 445 (556)
T PLN02669 373 GKLGFYYKEHEILPPLPVGFHRYILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERFG--MPVP----- 445 (556)
T ss_pred CEEEeeccCcccCCCCCCccchhhhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh--CCCC-----
Confidence 0 4889999999999999999999996 3555
Q ss_pred CccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCCccHHHHHHHHHHhc
Q 036892 328 AKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAAFAAGLAI 395 (447)
Q Consensus 328 ~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~ 395 (447)
+++|+++||+++|++|+ | |+|||||+||++++..|++++|||++|+++.
T Consensus 446 -~~~i~~~GGgs~s~~w~-Q-----------------i~ADVlg~pV~~~~~~ea~alGAA~~A~~~~ 494 (556)
T PLN02669 446 -PKRIIATGGASANQSIL-K-----------------LIASIFGCDVYTVQRPDSASLGAALRAAHGW 494 (556)
T ss_pred -CcEEEEEcChhcCHHHH-H-----------------HHHHHcCCCeEecCCCCchHHHHHHHHHHHH
Confidence 78999999999999999 9 9999999999999999999999999999843
No 19
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-59 Score=482.85 Aligned_cols=414 Identities=42% Similarity=0.642 Sum_probs=353.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHccccCChHH---HHHHhCC
Q 036892 2 RVCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGIIWGKTH---FLEAVGL 78 (447)
Q Consensus 2 ~~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~~~~~~---~~~~tG~ 78 (447)
|+||+++..++...++.... |.+|+|++|++|.|+|++..|+|+.++|.|+|+|+..++++++...... +...+|.
T Consensus 60 ~~ci~~~~e~l~~~~~~~~~-~~~igv~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~~~~~ln~~~~~~~~~~~~~~Gl 138 (516)
T KOG2517|consen 60 CRCIEKACEKLGVLNIKVVG-ATCIGVVNQREGSVLWNKRTGEPLTNIIVWMDHRAVSEVEELNSSTPSNLFLPRPYCGL 138 (516)
T ss_pred HHHHHHHHHhhccccccccc-cEEEEEEecCCceEEeecCCCCcccceEEeeccccHHHHHHHHhcCCchhcccccccCC
Confidence 78999999998776777777 9999999999999999999999999999999999999999765222222 2368999
Q ss_pred CCCcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhc
Q 036892 79 PISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETL 158 (447)
Q Consensus 79 ~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~l 158 (447)
++++.|.++||+||++|.|++....+.+...|.++..|+.++||+..++ +.+|.+|++++++||..+..||..+++.+
T Consensus 139 ~~s~~f~~~KL~Wl~dn~~~~~~~~~~~~~~~~~~~twl~~~~t~~~~~--~~~d~~Nas~t~~f~~~~~~wd~~~~~f~ 216 (516)
T KOG2517|consen 139 PVSPEFSAPKLRWLLDNVPEVLKAKEEGGFDLGTFDTWLATGLTGRSSC--HCTDVTNASRTGLFNTESGLWDLKLLDFF 216 (516)
T ss_pred ccccccchheehHHhhhCHHHHHHHHhcccchhhhhhheeecCCcccee--ccccccccccccccchhhhhhhhhhhhhh
Confidence 9999999999999999999995555544445555556666666663211 78999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCceeeeeccCC--CCCCCcEEeccchhHHhhhcCCC-CCCcEEEEecccceeccccCccccccCCCc
Q 036892 159 GIPAEILPKTFSNSEIIGKLGKGW--PITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYGTGAFILLNTGEEVVKSKHEL 235 (447)
Q Consensus 159 gi~~~~lP~i~~~g~~iG~l~~g~--l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~ 235 (447)
|+|.+++|++..+++++|++..|. +++|+||.++.||++|+++|..+ ++|+.+.++||++++..+++..+....+|+
T Consensus 217 ~lp~~llp~i~s~~e~~g~~~~~~~~~~~g~~vs~~lgDq~Aa~vg~~~~~~g~~~~t~~t~~Fl~~~~G~~~~~s~~g~ 296 (516)
T KOG2517|consen 217 GLPLNLLPDIRSSSEVYGTTAAGDLGLLEGTPVSSCLGDQQASMVGQMCYKPGCAKLTYGTGCFLLGVWGPYFDASQPGL 296 (516)
T ss_pred CCCcccCCcccccccccccccccccccccCcceeechhhHHHHHHhHhhhcCcceEEeeCCceEEeeccCCccccccCcc
Confidence 999999999999999999996442 67999999999999999999999 999999999999999988877666667788
Q ss_pred eeeeccccCCCCCCceeecccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC----------C--------------
Q 036892 236 LSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVISSASEIEELALQVHKQ----------G-------------- 291 (447)
Q Consensus 236 ~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~----------g-------------- 291 (447)
+.+..|+.|...+-.|.++|....+|..++|++|.+++.....++++++..+... |
T Consensus 297 ~~~~g~q~g~g~~~~~~leg~~a~~~~~v~w~~d~~~i~~~~~~i~~~~~~~~~t~d~~f~P~f~G~~sP~~d~~arg~i 376 (516)
T KOG2517|consen 297 LTTVGGQSGTGKLLDHALEGHAAFAGALVQWLRDNLGIIEELNEIEKLAAEVNLTSDVHFVPDFHGLRSPYADPTARGVI 376 (516)
T ss_pred ceecccccccccHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccCceEEEccccCCCCCCCCcccceeE
Confidence 8888888754333368999999999999999999887654455566666654321 1
Q ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchh
Q 036892 292 -------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFEC 364 (447)
Q Consensus 292 -------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~ 364 (447)
+..||.||++|+|+|+.|++++.|+++.+.+ ++.++++||.++|++++ |
T Consensus 377 ~Gls~~ts~~hia~A~leai~fqtr~Il~am~~~~~~~------i~~L~~~GG~s~N~ll~-Q----------------- 432 (516)
T KOG2517|consen 377 IGLSQDTSKEHLARAALEAIAFQTREILEAMERDGGHP------ISTLRVCGGLSKNPLLM-Q----------------- 432 (516)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------cceeeeccccccCHHHH-H-----------------
Confidence 8999999999999999999999999876567 89999999999999999 9
Q ss_pred hhhhccCCceeecCCCCccHHHHHHHHHHhcCC--CCCHHHHhcccccCCCcEEeCCCCHHHHHHHHHHHHHHHHHHhhh
Q 036892 365 RSADLLGSPVIRPADIETTALGAAFAAGLAIGV--FKEEEIFASGERTKTSTTFKPVLNEEFRKKKAESWCRAVERIFNL 442 (447)
Q Consensus 365 ~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~--~~~~~~a~~~~~~~~~~~~~P~~~~~~~~~~y~~~~~~~~~~~~~ 442 (447)
+.||++|+||+++.+.|++++||||+|+.+.|. |++++++. +.+ ..++|.|+.+...+.++|+.|+++++++.+|
T Consensus 433 ~~ADi~g~pv~~p~~~e~~~~GaA~l~~~a~~~~~~~~~~~~~--~~~-~~~~~~P~~~~~~~~~ky~~w~~ave~~~~~ 509 (516)
T KOG2517|consen 433 LQADILGLPVVRPQDVEAVALGAAMLAGAASGKWSYSSEEKAS--LTG-VGKVFRPNIDDKLLDKKYQIWLKAVERQLGY 509 (516)
T ss_pred HHHHHhCCccccccchhHHHHHHHHHHHhhcCCcchhhHHHHh--cCC-CcceecCCCCcHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999 77777774 333 5789999999855567999999999999999
Q ss_pred hcc
Q 036892 443 ADL 445 (447)
Q Consensus 443 ~~~ 445 (447)
.+.
T Consensus 510 ~~~ 512 (516)
T KOG2517|consen 510 RRI 512 (516)
T ss_pred Hhh
Confidence 754
No 20
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=100.00 E-value=1e-52 Score=430.81 Aligned_cols=393 Identities=23% Similarity=0.297 Sum_probs=328.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEEeCCCCcccc---------cccccccCCcHHHHHccccCChHHH
Q 036892 2 RVCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLY---------NAIVWMDARNSSEIGEGIIWGKTHF 72 (447)
Q Consensus 2 ~~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~---------~~i~W~D~R~~~~~~~~~~~~~~~~ 72 (447)
|.+|++++++ .++++.+ |++|||+++ +|+|++|+ +|+||. ++|.|+|+|+.+|+++.+ .....+
T Consensus 57 ~~aVr~~v~~---agv~~~~-V~gIGvDaT-cSlvv~d~-~g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in-~~~~~~ 129 (544)
T COG1069 57 CAAVRDVVAK---AGVDPAD-VVGIGVDAT-CSLVVIDR-DGNPLAVLPEFPNNPNVILWMDHRAVEEAEEIN-ATCHPV 129 (544)
T ss_pred HHHHHHHHHH---cCCChhH-eeEEEEcce-eeeEEECC-CCCeeccCCCCCCCCceEEeccchHHHHHHHHH-hhchHH
Confidence 4455555555 5899999 999999999 99999999 899885 599999999999999876 344558
Q ss_pred HHHhCCCCCcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccC-CCCCCC
Q 036892 73 LEAVGLPISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNL-KTLDWD 151 (447)
Q Consensus 73 ~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~-~~~~W~ 151 (447)
+...|..+++.+-.+||+|+++|.|++|+++.+ |..+.|||.|+||| ...-+.+++.....|.. .++-|+
T Consensus 130 L~~~GG~~SpEm~~PKlmwl~~~~p~~~~~a~~----~fdl~D~l~~~ltG-----~~~Rs~Ct~~~Kw~~~~~~~~~~~ 200 (544)
T COG1069 130 LDYYGGKISPEMMIPKLMWLKREAPAVWERAAH----IFDLADWLTWKLTG-----SIARSRCTAGCKWNWLEHEGGLWS 200 (544)
T ss_pred HHhhCCccChhhhHHHHHHHHhhChHHHHHhhh----hhhHHHHHHHHhhc-----chhhccccceeeeeeeccccCCCC
Confidence 999999999999999999999999999999985 99999999999999 77778888888878888 555699
Q ss_pred hHHHhhcCCCC-----CCCC-CcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCC-CCCcEEEEecccc
Q 036892 152 KPTLETLGIPA-----EILP-KTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQAC-KKGEVKSTYGTGA 218 (447)
Q Consensus 152 ~~~l~~lgi~~-----~~lP-~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~-~~g~~~~s~GTs~ 218 (447)
++.++.+|++. ..|| ++++.|+.+|.++ .| |++|+-|..|..|.+++++|++. +++.+..++|||.
T Consensus 201 ~~~f~~ig~~~l~~~~~~l~~~i~~~g~~vg~Lt~e~A~~lG-L~~~~~Vs~g~IDAhag~~Gv~~~~~~~l~~I~GTSt 279 (544)
T COG1069 201 ADFFDKIGLDDLRELDSKLPEDIVPAGEPVGGLTPEAAQELG-LPEGTVVSAGIIDAHAGAVGVGGAQPGSLAMIAGTST 279 (544)
T ss_pred HHHHHhcCchhhhcccccCCcccccCCccccccCHHHHHHhC-CCCCcEEeccceeccccccccccCCCCeEEEEeccce
Confidence 99999999862 4578 7999999999994 68 89999999999999999999998 9999999999998
Q ss_pred eeccccCccccccCCCceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCCC--------CC-----------HHH
Q 036892 219 FILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVI--------SS-----------ASE 279 (447)
Q Consensus 219 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~--------~~-----------~~~ 279 (447)
+.++.+ +++.. -.|.+.++. +...||.|.+||++..+|..++||.+..... .. .+.
T Consensus 280 C~m~~s-~~~~~-v~GvwGpy~---~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~~~~~~~ 354 (544)
T COG1069 280 CHMLLS-EKPRF-VPGVWGPYD---GAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESLAQRLEL 354 (544)
T ss_pred EEEEec-CCcee-cCccccccc---cccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHHHHHHHH
Confidence 886655 45543 346665543 2246999999999999999999999874211 11 123
Q ss_pred HHHHHHhcCCC-----------C---------------------CHH---HHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 036892 280 IEELALQVHKQ-----------G---------------------SQL---HIARAVLESMCFQVKDVLDSLQKDAVEKGV 324 (447)
Q Consensus 280 l~~~a~~~~~~-----------g---------------------~~~---~l~rAvlEgia~~~~~~l~~l~~~~g~~~~ 324 (447)
|.+.+.+.++. | +++ .+|+|.+|+++|+.|.++|.|++ .|..
T Consensus 355 l~~~~~~~~~l~~~l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~-~g~~-- 431 (544)
T COG1069 355 LTEAAAAIPPLASGLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFED-QGIA-- 431 (544)
T ss_pred HHhhHhccCcccCCcEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHH-cCCe--
Confidence 33334444421 1 445 99999999999999999999987 6999
Q ss_pred ccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCCccHHHHHHHHHHhcCCCCCHHHH
Q 036892 325 IKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAAFAAGLAIGVFKEEEIF 404 (447)
Q Consensus 325 ~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g~~~~~~~a 404 (447)
++.|+++||..||++|| | +.||++|+||+++...++.++|+||++++|.|.+.|+.+|
T Consensus 432 ----Id~l~~sGG~~KN~llm-q-----------------l~aDvtg~~v~i~~s~~a~llGsAm~~avAag~~~dl~~A 489 (544)
T COG1069 432 ----IDTLFASGGIRKNPLLM-Q-----------------LYADVTGRPVVIPASDQAVLLGAAMFAAVAAGVHPDLPAA 489 (544)
T ss_pred ----eeEEEecCCcccCHHHH-H-----------------HHHHhcCCeEEeecccchhhhHHHHHHHHHhccCcchHHH
Confidence 99999999999999999 9 9999999999999999999999999999999999999999
Q ss_pred hcccccCCCcEEeCCCCHHHHH-HHHHHHHHHHHHHhh
Q 036892 405 ASGERTKTSTTFKPVLNEEFRK-KKAESWCRAVERIFN 441 (447)
Q Consensus 405 ~~~~~~~~~~~~~P~~~~~~~~-~~y~~~~~~~~~~~~ 441 (447)
++.|.....+++.|.++...+| .+|++|++++.....
T Consensus 490 ~~aMs~~~~~~~~~~~~~~~~y~~lyr~y~~l~~~~~~ 527 (544)
T COG1069 490 AQAMSSAVEKTLPPPPERAARYERLYRRYLQLHDDAEK 527 (544)
T ss_pred HHHhhcccceecCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999875444444444777777 479999888766544
No 21
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=100.00 E-value=9.1e-39 Score=309.23 Aligned_cols=187 Identities=41% Similarity=0.614 Sum_probs=164.7
Q ss_pred HHHHHHHHHHh-CCCCCCCCeeEEEEcCcccceEEEeCCCCcccccccccccCCcHHHHHcccc-CChHHHHHHhCCCCC
Q 036892 4 CMAKALDKATA-DGHNVDTGLKAIGLTNQRETTVLWSKSTGCPLYNAIVWMDARNSSEIGEGII-WGKTHFLEAVGLPIS 81 (447)
Q Consensus 4 ~i~~~~~~~~~-~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~pl~~~i~W~D~R~~~~~~~~~~-~~~~~~~~~tG~~~~ 81 (447)
++.++++++.+ .+.+.++ |++|+||+|++++|+||+ +|+|++|+|+|+|+|+.++++++.. ...+.+++.||.+++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~-I~aI~is~~~~~~v~~D~-~~~pl~~~i~w~D~R~~~~~~~l~~~~~~~~~~~~tG~~~~ 128 (245)
T PF00370_consen 51 AICEALKELLSQAGIDPEQ-IKAIGISGQGHGLVLLDK-DGKPLRPAILWMDTRAAEEAEELNEEGSPEEIYEKTGLPLS 128 (245)
T ss_dssp HHHHHHHHHHHHCTSCGGG-EEEEEEEE-SSEEEEEET-TSSBSSCEE-TT-CTTHHHHHHHHHHTHHHHHHHHHSS-SS
T ss_pred HHHHHHHHHHhhcCcccce-eEEEEeccccCCcceecc-ccccccccccccccchhhHHHHHHhhcCcceeeeecccccc
Confidence 44555555543 3567788 999999999999999999 9999999999999999999997653 456888999999999
Q ss_pred cccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhccccccCCCCCCChHHHhhcCCC
Q 036892 82 TCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDKPTLETLGIP 161 (447)
Q Consensus 82 ~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~tgl~d~~~~~W~~~~l~~lgi~ 161 (447)
+.++++|++|+++|+|+.++++++ |++++|||.|+||| +.++|+|+|++|++||+++++|++++++.+||+
T Consensus 129 ~~~~~~kl~wl~~~~p~~~~~~~~----~~~~~dyl~~~LtG-----~~~~d~s~as~tgl~d~~~~~w~~~~l~~~gi~ 199 (245)
T PF00370_consen 129 PGYPLAKLLWLKENEPEIFEKAAK----FLTLSDYLAYKLTG-----RAATDYSNASRTGLYDIRTGQWDEELLEALGIP 199 (245)
T ss_dssp TTSHHHHHHHHHHHSHHHHHHHHE----EEEHHHHHHHHHHS-----C-EEEHHHHCTSSSEETTTTEE-HHHHHHTTSG
T ss_pred ccchHHHHHHHHHhCchhhhhhhh----cccHHHHHHhhccc-----cccccccchhccccccccccccCHHHHHhhCCC
Confidence 999999999999999999999996 99999999999999 899999999999999999999999999999999
Q ss_pred CCCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhc
Q 036892 162 AEILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLG 202 (447)
Q Consensus 162 ~~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg 202 (447)
.++||+++++|+++|+++ +| +++|+||++|++|++||++|
T Consensus 200 ~~~lP~i~~~g~~~G~~~~~~a~~~G-l~~~~pV~~g~~D~~aa~lG 245 (245)
T PF00370_consen 200 EELLPEIVPPGEIIGTLTPEAAKELG-LPEGTPVIAGGGDQAAAALG 245 (245)
T ss_dssp GGGSCEEE-TTSEEEEEEHHHHHHHT-STTTEEEEEEEEHHHHHHHH
T ss_pred hhhCCcEecCCCeeEEECHHHHHHhC-CCCCCEEEEEchHHHHhhcC
Confidence 999999999999999994 68 89999999999999999987
No 22
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-36 Score=301.16 Aligned_cols=394 Identities=19% Similarity=0.227 Sum_probs=319.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEEeCCCCc--------------------ccccccccccCCcHHHH
Q 036892 2 RVCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLWSKSTGC--------------------PLYNAIVWMDARNSSEI 61 (447)
Q Consensus 2 ~~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~vD~~~g~--------------------pl~~~i~W~D~R~~~~~ 61 (447)
.+||.-+++++.+++.+..+ |.||+=++|.|+.|+|.+ .++ .+...-.|||+.+..++
T Consensus 70 veAlDlll~kl~~~~~d~~k-V~aiSGagQQHGsVyWs~-ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC 147 (545)
T KOG2531|consen 70 VEALDLLLDKLREAGFDLSK-VMAISGAGQQHGSVYWSK-GAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQC 147 (545)
T ss_pred HHHHHHHHHHHHHcCCCHHH-hhhhcccccccceeeehh-hhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHH
Confidence 36888899999988999999 999999999999999987 555 23356789999999999
Q ss_pred Hccc--cCChHHHHHHhCCCCCcccHHHHHHHHHhcChHHHHHHhcCCccccChhHHHHHhHcCCCCCCceEeecchhhc
Q 036892 62 GEGI--IWGKTHFLEAVGLPISTCFTAVKLLWMMENVDVVKEAIKKGDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASR 139 (447)
Q Consensus 62 ~~~~--~~~~~~~~~~tG~~~~~~~~~~kl~Wl~~~~p~~~~~~~~~~~~~~~~~dyl~~~LTG~~~~~~~~~d~s~As~ 139 (447)
+++. ..+.+++.+.||..-+..|+.++++-+.+.+||.|+++++ +-.+++|+.-.|-|. ...+|+|++|+
T Consensus 148 ~ElE~~VGG~~~la~LTGSRAy~RFTGpQIrKi~~~~pe~Ye~Ter----ISLVSsFlaSlllG~----~a~id~sDgsG 219 (545)
T KOG2531|consen 148 QELEEAVGGAQELAKLTGSRAYERFTGPQIRKIYQQEPEAYEKTER----ISLVSSFLASLLLGS----YAPIDESDGSG 219 (545)
T ss_pred HHHHHHhccHHHHHHhhcchhhhhcccHHHHHHHHhChHhhhccce----eehHHHHHHHHHhcc----ccceecccccC
Confidence 9654 4788899999999999999999999999999999999997 888999999999995 77899999999
Q ss_pred cccccCCCCCCChHHHhhcCCC-CCCCCCcccCCceeeeec------cCCCCCCCcEEeccchhHHhhhcCCCCCCcEEE
Q 036892 140 TMLMNLKTLDWDKPTLETLGIP-AEILPKTFSNSEIIGKLG------KGWPITGIPISGCLGDHHAAMLGQACKKGEVKS 212 (447)
Q Consensus 140 tgl~d~~~~~W~~~~l~~lgi~-~~~lP~i~~~g~~iG~l~------~g~l~~g~pV~~g~gD~~aa~lg~g~~~g~~~~ 212 (447)
+.|+|++++.|++++|+..--+ +++|-.++++..+.|+|. .| +++++.|+.-.||.+++..|.-..++++.+
T Consensus 220 MNL~dIr~k~ws~~~L~~~apdL~~KL~~pv~~~~~~G~I~~Yfv~r~g-F~p~C~Vv~~tGDNpsslagL~l~~~dl~i 298 (545)
T KOG2531|consen 220 MNLLDIRKKKWSKALLDACAPDLEEKLGKPVPPMSIAGTISKYFVKRYG-FPPDCKVVPSTGDNPSSLAGLPLRPGDLLI 298 (545)
T ss_pred chHHHHhhhhhhHHHHhhhChhHHHHhCCCCCccccccchhhhhHhhcC-CCCCCEEEecCCCChHHhhCccccCCceEE
Confidence 9999999999999999988643 367778899999999994 57 899999999999999999998888899999
Q ss_pred EecccceeccccCccccccCCCceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC-
Q 036892 213 TYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGVISSASEIEELALQVHKQG- 291 (447)
Q Consensus 213 s~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~~g- 291 (447)
|+|||-.+.+++ .++.+.+++ +.+||. ..+..|+.+-+..+|+.+-+-+|+... ..+++.+++.+.+.|.++
T Consensus 299 SLGTSdTv~m~t-~~~~p~~eg--Hvf~hP---~~~~~YM~mlCfkNgSL~RE~ir~~~~-~~sWd~Fne~L~~t~~gn~ 371 (545)
T KOG2531|consen 299 SLGTSDTVFMVT-KEYHPSPEG--HVFCHP---TDPNHYMGMLCFKNGSLTRERIRNESA-NGSWDKFNEILDSTPSGNN 371 (545)
T ss_pred EecCcceEEEEc-CCCCCCCCc--ceeccC---CCccceEEEEEecCChHHHHHHhhccc-CCCHHHHHHHhccCcCCCC
Confidence 999999888888 455555543 345664 357899988888888888888887532 347888888777666531
Q ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcc
Q 036892 292 -----------------------------------------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKF 330 (447)
Q Consensus 292 -----------------------------------------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~ 330 (447)
++.+-+||++||-+...|...+.|.- ...+ ..
T Consensus 372 g~~g~~f~~~EIvP~~~~G~~R~~~~~~~~~~~~~~v~kf~~p~~e~rAlvEgQ~L~~r~~~~~lg~--~~~~-----~~ 444 (545)
T KOG2531|consen 372 GNLGVYFPEREIVPSVPKGTLRFIFENKELSAERIEVAKFSDPEIEARALVEGQFLSKRARAEPLGF--KSNP-----PT 444 (545)
T ss_pred CceeEecccccccCCCCccceEEEecCCccchhhcccccCCCchHHHHHHHHHhHhHhhhhhccccC--CCCC-----Cc
Confidence 58899999999999999988877753 2222 69
Q ss_pred EEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCCccHHHHHHHHHHhc-CCCCCHH-HHhcc-
Q 036892 331 LLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAAFAAGLAI-GVFKEEE-IFASG- 407 (447)
Q Consensus 331 ~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~-g~~~~~~-~a~~~- 407 (447)
+|+|+||.|+|+... | ++|||+|.||.+.+..+++++|+|+-|++|. +.-.+.. ..-..
T Consensus 445 rilvtGGAS~N~~Il-q-----------------~iadVf~apVy~~~~~~sa~lG~A~ra~ya~~~~~~~~~vp~~~~~ 506 (545)
T KOG2531|consen 445 RILVTGGASRNEAIL-Q-----------------IIADVFGAPVYTIEGPNSAALGGAYRAAYALLGDSFGIFVPFSNKT 506 (545)
T ss_pred eEEEecCccccHHHH-H-----------------HHHHHhCCCeEeecCCchhhHHHHHHHHHHHHhccccccccceeec
Confidence 999999999999999 9 9999999999999999999999999999875 2111111 00000
Q ss_pred ----ccc-CCCcEEeCCCCHHHHH-HHHHHHHHHHHH
Q 036892 408 ----ERT-KTSTTFKPVLNEEFRK-KKAESWCRAVER 438 (447)
Q Consensus 408 ----~~~-~~~~~~~P~~~~~~~~-~~y~~~~~~~~~ 438 (447)
..+ ..+-.-+|.++..+.| .+.++|+++.+.
T Consensus 507 ~~~~~~p~~~~L~~~p~~~~~e~Y~~ll~~~~e~e~~ 543 (545)
T KOG2531|consen 507 NYLSLTPSKLELACEPDSANWEIYGPLLKRLSELEDT 543 (545)
T ss_pred cccccCCccceeeecCCcchHHHHHHHHHHHHHHHHh
Confidence 000 0122356777766666 367777776554
No 23
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=99.92 E-value=1.5e-24 Score=202.68 Aligned_cols=158 Identities=32% Similarity=0.500 Sum_probs=127.3
Q ss_pred EEEEecccceeccccCccccccCCCceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCC---C---CC-HHHHH-
Q 036892 210 VKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGV---I---SS-ASEIE- 281 (447)
Q Consensus 210 ~~~s~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~---~---~~-~~~l~- 281 (447)
+++|+|||+++.+++ ++|..++++++.++... ..++.|.++++.+++|.+++|+++.++. . .. ++.+.
T Consensus 1 a~~s~GTs~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~wl~~~~~~~~~~~~~~~~~~~~~~ 76 (198)
T PF02782_consen 1 AVVSLGTSGFIMVVS-SEPVISPPGFWNPFADH---VIPGRYLLEGASSSGGNALEWLRQQLGFRESLSDEEEIYEDLAE 76 (198)
T ss_dssp EEEEESSSEEEEEEE-TSTTTTSSSSEEEEEEE---TSEEEEEEEEEESSSHHHHHHHHHTSTSHHHCSSTTHHHHHHHH
T ss_pred CEEEehhhhHHhhEe-CccccCCCeeEEeecCc---CCCCeEEEeeccccccchhHHHHHhhccchhhhhhhhccchHHH
Confidence 468999999998765 56776677777655411 2478899999999999999999998643 1 11 13333
Q ss_pred --HHHHhcCCCC------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCc
Q 036892 282 --ELALQVHKQG------------------------------SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAK 329 (447)
Q Consensus 282 --~~a~~~~~~g------------------------------~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~ 329 (447)
+.....+.++ ++.|++||++||++|.+|++++.|++..+.+ +
T Consensus 77 ~~~~~~~~~~~~~~~~p~~~G~~~p~~~~~~~g~~~gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~------~ 150 (198)
T PF02782_consen 77 LEAAASPPGSGGVFFLPFLSGERSPYWDPDARGSFIGLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIP------I 150 (198)
T ss_dssp HHHHHTSSTCTTSEEEECTTGBCTTTBBTTHCEEEEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC------E
T ss_pred HHhhhccCcccceeeeeccccCcccccccccccccccCCcccCHHHHHHHHHHhHHHHHHHhhhhcccccccc------c
Confidence 2222222111 7899999999999999999999999865888 8
Q ss_pred cEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCCccHHHHHHHHHHhc
Q 036892 330 FLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAAFAAGLAI 395 (447)
Q Consensus 330 ~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~ 395 (447)
++|+++||+++|++|+ | ++||++|+||.+++..|++++|||++|++|+
T Consensus 151 ~~i~~~GG~~~n~~~~-q-----------------~~Advl~~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 151 RRIRVSGGGAKNPLWM-Q-----------------ILADVLGRPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp SEEEEESGGGGSHHHH-H-----------------HHHHHHTSEEEEESSSTHHHHHHHHHHHHHT
T ss_pred eeeEeccccccChHHH-H-----------------HHHHHhCCceEeCCCCchHHHHHHHHHHhhC
Confidence 9999999999999999 9 9999999999999999999999999999874
No 24
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.53 E-value=4.9e-07 Score=87.95 Aligned_cols=100 Identities=28% Similarity=0.339 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHcCCCCCHHHHHHHHHhc--CC--C------------------CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 036892 259 IAGAAVQWLRDSLGVISSASEIEELALQV--HK--Q------------------GSQLHIARAVLESMCFQVKDVLDSLQ 316 (447)
Q Consensus 259 ~~G~~~~W~~~~~~~~~~~~~l~~~a~~~--~~--~------------------g~~~~l~rAvlEgia~~~~~~l~~l~ 316 (447)
.+|..++=+.+.+++ +++++++++.+. |+ + .+++++++++++++++.+...+..+
T Consensus 125 Gtg~f~e~~a~~l~~--~~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~~g~~~~di~~~~~~~va~~i~~~~~~~- 201 (248)
T TIGR00241 125 GTGRFLEVTARRLGV--SVEELGSLAEKADRKAKISSMCTVFAESELISLLAAGVKKEDILAGVYESIAERVAEMLQRL- 201 (248)
T ss_pred cccHHHHHHHHHcCC--CHHHHHHHHhcCCCCCCcCCEeEEEechhHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 467788888888886 678888776653 22 1 1899999999999999988765332
Q ss_pred hhhcccccccCCcc-EEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCC-ccHHHHHHH
Q 036892 317 KDAVEKGVIKDAKF-LLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIE-TTALGAAFA 390 (447)
Q Consensus 317 ~~~g~~~~~~~~~~-~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e-~~alGaAll 390 (447)
+ ++ .|+++||.++|+.|. + .+++.++.||.+++..+ .+|+|||++
T Consensus 202 -----~------~~~~Vvl~GGva~n~~l~-~-----------------~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 202 -----K------IEAPIVFTGGVSKNKGLV-K-----------------ALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred -----C------CCCCEEEECccccCHHHH-H-----------------HHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 2 34 899999999999999 9 99999999999999885 899999974
No 25
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.01 E-value=4.6e-05 Score=75.51 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=81.4
Q ss_pred cccchHHHHHHHHHHcCCCCCHHHHHHHHHh---cCC--CC------------------CHHHHHHHHHHHHHHHHHHHH
Q 036892 256 SVAIAGAAVQWLRDSLGVISSASEIEELALQ---VHK--QG------------------SQLHIARAVLESMCFQVKDVL 312 (447)
Q Consensus 256 ~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~---~~~--~g------------------~~~~l~rAvlEgia~~~~~~l 312 (447)
|...+|.-++=+.+.|++ +.+++.+++.+ -|+ ++ ++++|+++++++|+-.+...
T Consensus 157 CAAGTGrFLE~~A~~Lgi--~leel~~~a~~~~~~p~~Iss~CtVFAeSevi~l~~~G~~~edI~aGl~~sia~rv~~~- 233 (293)
T TIGR03192 157 CAAGTGRGMEVISDLMQI--PIADLGPRSFDVETEPEAVSSICVVFAKSEALGLLKAGYTKNMVIAAYCQAMAERVVSL- 233 (293)
T ss_pred ccccccHHHHHHHHHcCC--CHHHHHHHHHhcCCCCCCcCCcceEeccHhHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-
Confidence 444578999999998987 56778776622 122 21 89999999999999765433
Q ss_pred HHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCcee-ecCCCC-ccHHHHHHH
Q 036892 313 DSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVI-RPADIE-TTALGAAFA 390 (447)
Q Consensus 313 ~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~-~~~~~e-~~alGaAll 390 (447)
+++ .+.. +.|+++||.++|+.+. + .+.+.|+++|. .++..+ .+|+|||++
T Consensus 234 --~~~-~~i~-------~~v~~~GGva~N~~l~-~-----------------al~~~Lg~~v~~~p~~p~~~GAlGAAL~ 285 (293)
T TIGR03192 234 --LER-IGVE-------EGFFITGGIAKNPGVV-K-----------------RIERILGIKAVDTKIDSQIAGALGAALF 285 (293)
T ss_pred --hcc-cCCC-------CCEEEECcccccHHHH-H-----------------HHHHHhCCCceeCCCCccHHHHHHHHHH
Confidence 333 3443 6799999999999999 9 99999999998 455444 799999999
Q ss_pred HHH
Q 036892 391 AGL 393 (447)
Q Consensus 391 A~~ 393 (447)
|..
T Consensus 286 A~~ 288 (293)
T TIGR03192 286 GYT 288 (293)
T ss_pred HHH
Confidence 854
No 26
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.87 E-value=0.00012 Score=75.50 Aligned_cols=105 Identities=28% Similarity=0.296 Sum_probs=83.2
Q ss_pred ccchHHHHHHHHHHcCCCCCHHHHHHHHHhc---CC--CC------------------CHHHHHHHHHHHHHHHHHHHHH
Q 036892 257 VAIAGAAVQWLRDSLGVISSASEIEELALQV---HK--QG------------------SQLHIARAVLESMCFQVKDVLD 313 (447)
Q Consensus 257 ~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~---~~--~g------------------~~~~l~rAvlEgia~~~~~~l~ 313 (447)
...+|..++-+.+.|+. +.+++.+++.+. |. ++ +++|++.++..+|+-++...
T Consensus 273 AAGTGrFLE~~A~~Lgi--~ieEl~~lA~~~~~~pv~IsS~CtVFaeSevIsll~~G~~~eDIaAGl~~SIa~rv~~~-- 348 (404)
T TIGR03286 273 AGASGRFLEMTAKRLGV--DITELGKLALKGMPEKVRMNSYCIVFGIQDLVTALAEGASPEDVAAAACHSVAEQVYEQ-- 348 (404)
T ss_pred cccCcHHHHHHHHHhCC--CHHHHHHHHHhCCCCCCCccCcccccccHhHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--
Confidence 33578889988888876 688888887654 21 11 89999999999999886641
Q ss_pred HHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCC-ccHHHHHHHH
Q 036892 314 SLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIE-TTALGAAFAA 391 (447)
Q Consensus 314 ~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e-~~alGaAllA 391 (447)
.+++ .+.. +.|+++||.++|+.+. . .+.+.+|.+|.+++..+ .+|+|||++|
T Consensus 349 l~~~-~~i~-------~~VvftGGva~N~gvv-~-----------------ale~~Lg~~iivPe~pq~~GAiGAAL~A 401 (404)
T TIGR03286 349 QLQE-IDVR-------EPVILVGGTSLIEGLV-K-----------------ALGDLLGIEVVVPEYSQYIGAVGAALLA 401 (404)
T ss_pred Hhhc-CCCC-------CcEEEECChhhhHHHH-H-----------------HHHHHhCCcEEECCcccHHHHHHHHHHh
Confidence 2222 3443 6799999999999999 9 99999999999999877 6999999987
No 27
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.80 E-value=0.00018 Score=72.73 Aligned_cols=115 Identities=24% Similarity=0.328 Sum_probs=88.8
Q ss_pred CCceeec-ccccchHHHHHHHHHHcCCCCCHHHHHHHHHhcCC----CC------------------CHHHHHHHHHHHH
Q 036892 248 PTNYALE-GSVAIAGAAVQWLRDSLGVISSASEIEELALQVHK----QG------------------SQLHIARAVLESM 304 (447)
Q Consensus 248 ~~~~~~~-g~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~~----~g------------------~~~~l~rAvlEgi 304 (447)
+..|.+. -|...+|.-++-+.+.|+. +.+++.+.|....+ ++ +++++..++.+++
T Consensus 251 v~df~mN~~CAAGtGrFLE~~A~~Lgv--~v~E~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G~~~EdI~AGl~~Sv 328 (396)
T COG1924 251 VDDFTMNDKCAAGTGRFLEVIARRLGV--DVEELGKLALKATPPVKINSRCAVFAESEVISALAEGASPEDILAGLAYSV 328 (396)
T ss_pred eeeeEeccccccccchHHHHHHHHhCC--CHHHHHHHHhcCCCCcccCCeeEEEehHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3445554 4455678999999999987 78889888876432 11 8999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCC-cc
Q 036892 305 CFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIE-TT 383 (447)
Q Consensus 305 a~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e-~~ 383 (447)
+-++..- .+++ ..+. +.|++.||.+.|..+. + .+.|.+|++|.+|+..+ .+
T Consensus 329 ~~~v~~~--~~~~-~~i~-------~~iv~~GGva~n~av~-~-----------------ale~~lg~~V~vP~~~ql~G 380 (396)
T COG1924 329 AENVAEK--VIKR-VDIE-------EPIVLQGGVALNKAVV-R-----------------ALEDLLGRKVIVPPYAQLMG 380 (396)
T ss_pred HHHHHHH--Hhhc-cCCC-------CCEEEECcchhhHHHH-H-----------------HHHHHhCCeeecCCccchhh
Confidence 8765431 2332 2333 4499999999999999 9 99999999999999776 69
Q ss_pred HHHHHHHHH
Q 036892 384 ALGAAFAAG 392 (447)
Q Consensus 384 alGaAllA~ 392 (447)
|+|||++|-
T Consensus 381 AiGAAL~a~ 389 (396)
T COG1924 381 AIGAALIAK 389 (396)
T ss_pred HHHHHHHHh
Confidence 999999984
No 28
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.78 E-value=0.00016 Score=74.02 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=81.8
Q ss_pred cccchHHHHHHHHHHcCCCCCHHHHHHHHHhcC--C--CC------------------CHHHHHHHHHHHHHHHHHHHHH
Q 036892 256 SVAIAGAAVQWLRDSLGVISSASEIEELALQVH--K--QG------------------SQLHIARAVLESMCFQVKDVLD 313 (447)
Q Consensus 256 ~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~~--~--~g------------------~~~~l~rAvlEgia~~~~~~l~ 313 (447)
|...+|.-++-+.+.|+. +.+++.+++.+.. . ++ ++++|+.++.++|+-.+...+.
T Consensus 299 CAAGTGrFLE~mA~~Lgi--~leEl~~lA~~a~~pv~ISS~CtVFAESEVIslla~G~~reDIaAGL~~SIA~Rv~s~l~ 376 (432)
T TIGR02259 299 CAAGCGRYLGYIADEMNM--GLHELGPLAMKSSKPARINSTCTVFAGAELRDRLALGDKREDILAGLHRAIILRAISIIS 376 (432)
T ss_pred ccccchHHHHHHHHHcCC--CHHHHHHHHhcCCCCCCcCCcceEEehHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 344678899999998887 5677877765532 1 21 8999999999999987665543
Q ss_pred HHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhcc-----CCceeecCCCC-ccHHHH
Q 036892 314 SLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLL-----GSPVIRPADIE-TTALGA 387 (447)
Q Consensus 314 ~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl-----~~pV~~~~~~e-~~alGa 387 (447)
.+. +. .+.|+++||.++|+.+. + .+.+.+ +.+|.+++..+ .+|+||
T Consensus 377 r~~---~i-------~~~VvftGGvA~N~gvv-~-----------------aLe~~L~~~~~~~~V~Vp~~pq~~GALGA 428 (432)
T TIGR02259 377 RSG---GI-------TDQFTFTGGVAKNEAAV-K-----------------ELRKLIKENYGEVQINIDPDSIYTGALGA 428 (432)
T ss_pred ccc---CC-------CCCEEEECCccccHHHH-H-----------------HHHHHHccccCCCeEecCCCccHHHHHHH
Confidence 331 33 36799999999999999 8 888888 57898988766 799999
Q ss_pred HHHH
Q 036892 388 AFAA 391 (447)
Q Consensus 388 AllA 391 (447)
|++|
T Consensus 429 AL~a 432 (432)
T TIGR02259 429 SEFA 432 (432)
T ss_pred HHhC
Confidence 9875
No 29
>PRK13317 pantothenate kinase; Provisional
Probab=97.65 E-value=0.0009 Score=66.32 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEec-cccccHHHHHhhhhhcccCccccccchhhhhhcc
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDG-AIDANLALLLSFEKYYYFPFLSFSYFECRSADLL 370 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~G-G~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl 370 (447)
+++|++++++..++..+-...-.+.+. .. ++.|+++| |.++|+.++ + .+++.+
T Consensus 194 ~~eDIaasl~~~v~~~I~~lA~~~ar~--~~------~~~Ivf~G~gla~n~~l~-~-----------------~l~~~l 247 (277)
T PRK13317 194 TSSDILAGVIGLVGEVITTLSIQAARE--KN------IENIVYIGSTLTNNPLLQ-E-----------------IIESYT 247 (277)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh--cC------CCeEEEECcccccCHHHH-H-----------------HHHHHH
Confidence 789999999999988876654333332 23 57899998 689999998 8 888888
Q ss_pred ---CCceeecCCCC-ccHHHHHHHHH
Q 036892 371 ---GSPVIRPADIE-TTALGAAFAAG 392 (447)
Q Consensus 371 ---~~pV~~~~~~e-~~alGaAllA~ 392 (447)
+..+..+++.+ .+|+|||+.|.
T Consensus 248 ~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 248 KLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred hcCCceEEecCCCchhHHHHHHHHhh
Confidence 78888888766 69999999874
No 30
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.59 E-value=0.00046 Score=67.56 Aligned_cols=106 Identities=24% Similarity=0.283 Sum_probs=76.5
Q ss_pred cccchHHHHHHHHHHcCCCCCHHHHHHHHHhc--CC--CC------------------CHHHHHHHHHHHHHHHHHHHHH
Q 036892 256 SVAIAGAAVQWLRDSLGVISSASEIEELALQV--HK--QG------------------SQLHIARAVLESMCFQVKDVLD 313 (447)
Q Consensus 256 ~~~~~G~~~~W~~~~~~~~~~~~~l~~~a~~~--~~--~g------------------~~~~l~rAvlEgia~~~~~~l~ 313 (447)
|...+|..++-+.+.|+. +.+++.+++.+. |. ++ ++++|+.++.++|+-.+...+.
T Consensus 129 CAAGTG~FLe~~A~~L~i--~leel~~~a~~~~~~~~iss~CtVFaeSevi~~~~~G~~~edI~aGl~~sia~r~~~~~~ 206 (262)
T TIGR02261 129 CASGSGQFLENIARYLGI--AQDEIGSLSQQADNPEKVSGICAVLAETDVINMVSRGISAPNILKGIHESMADRLAKLLK 206 (262)
T ss_pred ccccccHHHHHHHHHhCC--CHHHHHHHHhcCCCCCCcCCCceEEchhhHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 444578999999998887 678888776543 21 11 8999999999999987654443
Q ss_pred HHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC-Cc----eeecCCCC-ccHHHH
Q 036892 314 SLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG-SP----VIRPADIE-TTALGA 387 (447)
Q Consensus 314 ~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~-~p----V~~~~~~e-~~alGa 387 (447)
.+ +.. .+.|+++||.++|+.+. + .+.+.|+ .+ |.++++.+ .+|+||
T Consensus 207 ~~----~~~------~~~v~~~GGva~n~~~~-~-----------------~le~~l~~~~~~~~v~~~~~~q~~gAlGA 258 (262)
T TIGR02261 207 SL----GAL------DGTVLCTGGLALDAGLL-E-----------------ALKDAIQEAKMAVAAENHPDAIYAGAIGA 258 (262)
T ss_pred cc----CCC------CCcEEEECcccccHHHH-H-----------------HHHHHhccCCcceEecCCCcchHHHHHHH
Confidence 32 332 24699999999999999 8 8888773 23 44444443 699999
Q ss_pred HHHH
Q 036892 388 AFAA 391 (447)
Q Consensus 388 AllA 391 (447)
|++|
T Consensus 259 Al~~ 262 (262)
T TIGR02261 259 ALWG 262 (262)
T ss_pred HHcC
Confidence 9874
No 31
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=96.73 E-value=0.0095 Score=58.67 Aligned_cols=101 Identities=19% Similarity=0.224 Sum_probs=65.1
Q ss_pred cchHHHHH-HHHHHcCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEec
Q 036892 258 AIAGAAVQ-WLRDSLGVISSASEIEELALQVHKQGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDG 336 (447)
Q Consensus 258 ~~~G~~~~-W~~~~~~~~~~~~~l~~~a~~~~~~g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~G 336 (447)
+.||..+. .+.+.++. ++++.+++-.+........++++..++-+.-.+++.++. .. ++.|+++|
T Consensus 164 ~~GG~~it~~Ia~~l~i--~~~eAE~lK~~~~~~~~~~~ii~~~~~~i~~~i~~~l~~------~~------~~~IvLtG 229 (267)
T PRK15080 164 PTGGTHMSLVLAGAYGI--SFEEAEQYKRDPKHHKEIFPVVKPVVEKMASIVARHIEG------QD------VEDIYLVG 229 (267)
T ss_pred cCchHHHHHHHHHHhCC--CHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhc------CC------CCEEEEEC
Confidence 34555443 45455654 455544432221111133455556555555555544321 23 68999999
Q ss_pred cccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCC-ccHHHHHHH
Q 036892 337 AIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIE-TTALGAAFA 390 (447)
Q Consensus 337 G~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e-~~alGaAll 390 (447)
|+++-+-+. + ++.+.||.||.++..++ .+++|+|+.
T Consensus 230 G~s~lpgl~-e-----------------~l~~~lg~~v~~~~~P~~~~a~Gaa~~ 266 (267)
T PRK15080 230 GTCCLPGFE-E-----------------VFEKQTGLPVHKPQHPLFVTPLGIALS 266 (267)
T ss_pred CcccchhHH-H-----------------HHHHHhCCCcccCCCchHHHHHHHHhh
Confidence 999999998 9 99999999999988765 799999975
No 32
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.60 E-value=0.01 Score=57.59 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCc
Q 036892 294 LHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSP 373 (447)
Q Consensus 294 ~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~p 373 (447)
.++.+.+++.+.-.+++.++ + .+ ++.|+++||+++.+.+. + ++.+.||.|
T Consensus 172 ~~~i~~~~~~i~~~i~~~l~---~---~~------~~~v~LtGG~a~ipgl~-e-----------------~l~~~lg~~ 221 (239)
T TIGR02529 172 FPVVKPVYQKMASIVKRHIE---G---QG------VKDLYLVGGACSFSGFA-D-----------------VFEKQLGLN 221 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH---h---CC------CCEEEEECchhcchhHH-H-----------------HHHHHhCCC
Confidence 34445555555555544443 1 23 67999999999999999 9 999999999
Q ss_pred eeecCCC-CccHHHHHH
Q 036892 374 VIRPADI-ETTALGAAF 389 (447)
Q Consensus 374 V~~~~~~-e~~alGaAl 389 (447)
|.++.++ +.+|+|||+
T Consensus 222 v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 222 VIKPQHPLYVTPLGIAM 238 (239)
T ss_pred cccCCCCCeehhheeec
Confidence 9887764 579999986
No 33
>CHL00094 dnaK heat shock protein 70
Probab=96.26 E-value=0.012 Score=64.85 Aligned_cols=84 Identities=25% Similarity=0.289 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhc
Q 036892 295 HIARAVLESMCFQVKDVL-----DSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADL 369 (447)
Q Consensus 295 ~l~rAvlEgia~~~~~~l-----~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Adv 369 (447)
.|.|+-+|.++..+..-+ +.|++ .+.. ...++.|+++||.++.|.+. + ++++.
T Consensus 294 ~itR~~fe~l~~~l~~~~~~~i~~~L~~-a~~~---~~~i~~ViLvGGssriP~v~-~-----------------~l~~~ 351 (621)
T CHL00094 294 TLTRAKFEELCSDLINRCRIPVENALKD-AKLD---KSDIDEVVLVGGSTRIPAIQ-E-----------------LVKKL 351 (621)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC---hhhCcEEEEECCccCChHHH-H-----------------HHHHH
Confidence 367777887777543322 22322 3442 23388999999999999999 9 99999
Q ss_pred cCCceeecC-CCCccHHHHHHHHHHhcCCCCC
Q 036892 370 LGSPVIRPA-DIETTALGAAFAAGLAIGVFKE 400 (447)
Q Consensus 370 l~~pV~~~~-~~e~~alGaAllA~~~~g~~~~ 400 (447)
+|.++.... ..|+.|+|||+.|+...|.+++
T Consensus 352 fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~ 383 (621)
T CHL00094 352 LGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKD 383 (621)
T ss_pred hCCCcCcCCCchhHHHhhhHHHHHHhcCCccc
Confidence 998775543 4668999999999987775443
No 34
>PRK13410 molecular chaperone DnaK; Provisional
Probab=96.24 E-value=0.015 Score=64.58 Aligned_cols=82 Identities=23% Similarity=0.204 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC
Q 036892 296 IARAVLESMCFQVKDVL----DSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG 371 (447)
Q Consensus 296 l~rAvlEgia~~~~~~l----~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~ 371 (447)
|.|+-+|.++..+..-+ +...+.+|.. ...++.|+++||.++.|.+. + ++.+.+|
T Consensus 295 itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~---~~dId~VvLVGGssRiP~V~-~-----------------~l~~~fg 353 (668)
T PRK13410 295 LDRKQFESLCGDLLDRLLRPVKRALKDAGLS---PEDIDEVVLVGGSTRMPMVQ-Q-----------------LVRTLIP 353 (668)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---hhhCcEEEEECCccccHHHH-H-----------------HHHHHcC
Confidence 45666666555543322 2221224543 23378999999999999999 9 9999999
Q ss_pred Cceee-cCCCCccHHHHHHHHHHhcCCC
Q 036892 372 SPVIR-PADIETTALGAAFAAGLAIGVF 398 (447)
Q Consensus 372 ~pV~~-~~~~e~~alGaAllA~~~~g~~ 398 (447)
.++.. ....|+.|+|||+.|+.-.+.+
T Consensus 354 ~~~~~~~npdeaVA~GAAi~aa~ls~~~ 381 (668)
T PRK13410 354 REPNQNVNPDEVVAVGAAIQAGILAGEL 381 (668)
T ss_pred CCcccCCCCchHHHHhHHHHHHhhcccc
Confidence 86644 3457799999999999876643
No 35
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.97 E-value=0.11 Score=51.60 Aligned_cols=72 Identities=14% Similarity=0.045 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecc-ccccHHHHHhhhhhcccCccccccchhhhhhcc
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGA-IDANLALLLSFEKYYYFPFLSFSYFECRSADLL 370 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG-~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl 370 (447)
+++|+.++++..++..+-++.-...+.. . +++|++.|| ...|+..+ + .++..+
T Consensus 202 ~~eDiAaSLl~mV~~nIg~lA~~~a~~~--~------~~~IvF~Gg~L~~~~~l~-~-----------------~~~~~~ 255 (279)
T TIGR00555 202 SPEDIAASLLGLIGNNIGQIAYLCALRY--N------IDRIVFIGSFLRNNQLLM-K-----------------VLSYAT 255 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHc--C------CCeEEEECCcccCCHHHH-H-----------------HHHHHH
Confidence 5999999999999997766543332222 2 578999999 56788888 7 555555
Q ss_pred C---CceeecCCCC-ccHHHHHH
Q 036892 371 G---SPVIRPADIE-TTALGAAF 389 (447)
Q Consensus 371 ~---~pV~~~~~~e-~~alGaAl 389 (447)
+ ..+..+++.+ .+|+|||+
T Consensus 256 ~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 256 NFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred hhcCceEEEECCcchHHHhhhcc
Confidence 4 5566777655 69999986
No 36
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=95.54 E-value=0.042 Score=60.96 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=44.8
Q ss_pred CCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCC-ceeecCCCCccHHHHHHHHHHhcCC
Q 036892 327 DAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGS-PVIRPADIETTALGAAFAAGLAIGV 397 (447)
Q Consensus 327 ~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~-pV~~~~~~e~~alGaAllA~~~~g~ 397 (447)
..++.|+++||.++-|... + ++.+.||+ |+......|+.|+|||+.|+.-.+.
T Consensus 352 ~dId~VvLVGGssriP~V~-~-----------------~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~ 405 (657)
T PTZ00186 352 KEINDVVLVGGMTRMPKVV-E-----------------EVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD 405 (657)
T ss_pred hhCCEEEEECCcccChHHH-H-----------------HHHHHhCCCccccCCCchHHHHhHHHHHHHhccc
Confidence 3488999999999999999 9 99999997 4555556789999999999865553
No 37
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=95.31 E-value=0.049 Score=60.15 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=44.2
Q ss_pred CccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeec-CCCCccHHHHHHHHHHhcCC
Q 036892 328 AKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRP-ADIETTALGAAFAAGLAIGV 397 (447)
Q Consensus 328 ~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~-~~~e~~alGaAllA~~~~g~ 397 (447)
.++.|+++||.++.|.+. + ++.+.+|.++... ...|+.|+|||+.|+.-.|.
T Consensus 326 ~id~ViLvGGssriP~v~-~-----------------~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~ 378 (627)
T PRK00290 326 DIDEVILVGGSTRMPAVQ-E-----------------LVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD 378 (627)
T ss_pred hCcEEEEECCcCCChHHH-H-----------------HHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC
Confidence 388999999999999999 9 9999999877544 35678999999999876653
No 38
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=95.08 E-value=0.058 Score=58.86 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=42.8
Q ss_pred ccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecC-CCCccHHHHHHHHHHhcC
Q 036892 329 KFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPA-DIETTALGAAFAAGLAIG 396 (447)
Q Consensus 329 ~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~-~~e~~alGaAllA~~~~g 396 (447)
++.|.++||.++.|.+. + ++.+.++.++...- ..++.|+|||+.|+.-.+
T Consensus 329 i~~V~lvGG~sr~p~v~-~-----------------~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~ 379 (602)
T PF00012_consen 329 IDSVLLVGGSSRIPYVQ-E-----------------ALKELFGKKISKSVNPDEAVARGAALYAAILSG 379 (602)
T ss_dssp ESEEEEESGGGGSHHHH-H-----------------HHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHT
T ss_pred cceeEEecCcccchhhh-h-----------------hhhhccccccccccccccccccccccchhhhcc
Confidence 78999999999999998 9 99999998776544 567899999999987655
No 39
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=95.02 E-value=0.07 Score=58.53 Aligned_cols=51 Identities=22% Similarity=0.178 Sum_probs=43.5
Q ss_pred ccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecC-CCCccHHHHHHHHHHhcCC
Q 036892 329 KFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPA-DIETTALGAAFAAGLAIGV 397 (447)
Q Consensus 329 ~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~-~~e~~alGaAllA~~~~g~ 397 (447)
++.|+++||.++.|.+. + ++.+.+|.++.... ..|+.|+|||+.|+.-.+.
T Consensus 325 i~~V~LvGGssriP~v~-~-----------------~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~ 376 (595)
T TIGR02350 325 IDEVILVGGSTRIPAVQ-E-----------------LVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD 376 (595)
T ss_pred CcEEEEECCcccChHHH-H-----------------HHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC
Confidence 78999999999999999 9 99999997776543 5678999999999875553
No 40
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=94.97 E-value=0.068 Score=58.91 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=42.9
Q ss_pred CccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceee-cCCCCccHHHHHHHHHHhcC
Q 036892 328 AKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIR-PADIETTALGAAFAAGLAIG 396 (447)
Q Consensus 328 ~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~-~~~~e~~alGaAllA~~~~g 396 (447)
.++.|+++||.++.|... + ++.+.+|.++.. ....|+.|+|||+.|+.-.+
T Consensus 328 ~i~~ViLvGGssriP~v~-~-----------------~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~ 379 (616)
T PRK05183 328 EVKEVVMVGGSTRVPLVR-E-----------------AVGEFFGRTPLTSIDPDKVVAIGAAIQADILAG 379 (616)
T ss_pred cCCEEEEECCcccChHHH-H-----------------HHHHHhccCcCcCCCchHHHHHHHHHHHHHhcc
Confidence 378999999999999999 9 999999976543 34577899999999986554
No 41
>PLN03184 chloroplast Hsp70; Provisional
Probab=94.73 E-value=0.097 Score=58.32 Aligned_cols=53 Identities=25% Similarity=0.120 Sum_probs=44.7
Q ss_pred CCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceee-cCCCCccHHHHHHHHHHhcCC
Q 036892 327 DAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIR-PADIETTALGAAFAAGLAIGV 397 (447)
Q Consensus 327 ~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~-~~~~e~~alGaAllA~~~~g~ 397 (447)
..++.|+++||.++-|.+. + ++.+.+|.++.. .+..|+.|+|||+.|+.-.+.
T Consensus 364 ~dId~ViLvGGssriP~V~-~-----------------~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~ 417 (673)
T PLN03184 364 KDIDEVILVGGSTRIPAVQ-E-----------------LVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE 417 (673)
T ss_pred hHccEEEEECCccccHHHH-H-----------------HHHHHhCCCcccccCcchHHHHHHHHHHHHhccC
Confidence 3489999999999999999 9 999999987654 456789999999999876554
No 42
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=94.62 E-value=0.056 Score=54.83 Aligned_cols=76 Identities=18% Similarity=0.085 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCcc-EEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCc
Q 036892 295 HIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKF-LLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSP 373 (447)
Q Consensus 295 ~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~-~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~p 373 (447)
++++..++.+.-.+++.++.. +.. ..++.++ .|+++||+++=+.+. + ++.+.++.|
T Consensus 246 eii~~~~~~i~~~i~~~l~~~----~~~-~~~~~i~~~IvL~GG~s~ipgi~-e-----------------~l~~~~~~~ 302 (336)
T PRK13928 246 EALKEPVSAIVQAVKSVLERT----PPE-LSADIIDRGIIMTGGGALLHGLD-K-----------------LLAEETKVP 302 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhC----Ccc-ccHhhcCCCEEEECcccchhhHH-H-----------------HHHHHHCCC
Confidence 344444555555555554433 211 0112245 699999999999998 9 999999999
Q ss_pred eeecC-CCCccHHHHHHHHHH
Q 036892 374 VIRPA-DIETTALGAAFAAGL 393 (447)
Q Consensus 374 V~~~~-~~e~~alGaAllA~~ 393 (447)
|.+.. ..++.|+|||+.+..
T Consensus 303 v~~~~~P~~ava~Gaa~~~~~ 323 (336)
T PRK13928 303 VYIAEDPISCVALGTGKMLEN 323 (336)
T ss_pred ceecCCHHHHHHHHHHHHHhc
Confidence 98887 456899999998754
No 43
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=94.61 E-value=0.099 Score=57.46 Aligned_cols=51 Identities=24% Similarity=0.197 Sum_probs=42.8
Q ss_pred CccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeec-CCCCccHHHHHHHHHHhcC
Q 036892 328 AKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRP-ADIETTALGAAFAAGLAIG 396 (447)
Q Consensus 328 ~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~-~~~e~~alGaAllA~~~~g 396 (447)
.++.|+++||.++.|... + ++.+.++.++... ...|+.|+|||+.|+.-.+
T Consensus 312 ~id~ViLvGGssriP~V~-~-----------------~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~ 363 (599)
T TIGR01991 312 EIKGVVLVGGSTRMPLVR-R-----------------AVAELFGQEPLTDIDPDQVVALGAAIQADLLAG 363 (599)
T ss_pred hCCEEEEECCcCCChHHH-H-----------------HHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhcc
Confidence 378999999999999999 9 9999998766543 4577999999999987544
No 44
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=94.47 E-value=0.62 Score=47.60 Aligned_cols=73 Identities=15% Similarity=0.044 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecccccc-HHHHHhhhhhcccCccccccchhhhh---
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDAN-LALLLSFEKYYYFPFLSFSYFECRSA--- 367 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s-~~~~~q~~~~~~~~~~~~~~~~~~~A--- 367 (447)
+++|++++++.-|++.+-++.-...+..+ +++|+++|...++ ++.+ + .++
T Consensus 259 ~~~Dia~sll~mv~~nIg~la~l~A~~~~--------~~~I~f~G~~~~~~~~~~-~-----------------~l~~a~ 312 (341)
T PF03630_consen 259 SKEDIAKSLLNMVSNNIGQLAYLHAKIHG--------VKRIVFGGSFIRNNPITM-R-----------------TLSYAI 312 (341)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHT----------EEEEESGGGTSSCHHH-H-----------------HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCEEEEEeccccCCHHHH-H-----------------HHHHHH
Confidence 47999999999999998887655444334 6799999998875 6666 6 666
Q ss_pred hcc---CCceeecCC-CCccHHHHHHH
Q 036892 368 DLL---GSPVIRPAD-IETTALGAAFA 390 (447)
Q Consensus 368 dvl---~~pV~~~~~-~e~~alGaAll 390 (447)
+-+ +.....+.. .-.+|+||.+.
T Consensus 313 ~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 313 NFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp HHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred HHhccCCceEEEecCCchhHHHHHHHh
Confidence 322 233334443 44699999764
No 45
>PLN02920 pantothenate kinase 1
Probab=94.30 E-value=0.94 Score=46.88 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccH-HHH
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANL-ALL 345 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~-~~~ 345 (447)
+++|++|+++--|.+.+-++.-...+..+ +++|+.+|...+++ ..+
T Consensus 269 s~eDia~SLL~mVs~nIgqiA~L~A~~~~--------ik~Ivf~G~fir~~~~tm 315 (398)
T PLN02920 269 KPEDVARSLLRMISNNIGQISYLNALRFG--------LKRIFFGGFFIRGHSYTM 315 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCEEEEEeecccCcHHHH
Confidence 48999999999999998886544433333 67999999999987 444
No 46
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=94.25 E-value=0.12 Score=56.69 Aligned_cols=50 Identities=12% Similarity=-0.004 Sum_probs=43.0
Q ss_pred ccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeec-CCCCccHHHHHHHHHHhcC
Q 036892 329 KFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRP-ADIETTALGAAFAAGLAIG 396 (447)
Q Consensus 329 ~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~-~~~e~~alGaAllA~~~~g 396 (447)
++.|+++||.++.|... + ++.+.+|.++... +..++.|+|||+.|+.-.+
T Consensus 309 Id~ViLvGGssriP~v~-~-----------------~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~ 359 (595)
T PRK01433 309 IDGVILVGGATRIPLIK-D-----------------ELYKAFKVDILSDIDPDKAVVWGAALQAENLIA 359 (595)
T ss_pred CcEEEEECCcccChhHH-H-----------------HHHHHhCCCceecCCchHHHHHHHHHHHHHhhC
Confidence 89999999999999999 9 9999999877654 4567899999999987433
No 47
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=94.15 E-value=0.099 Score=58.15 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=43.9
Q ss_pred CccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeec-CCCCccHHHHHHHHHHhcCC
Q 036892 328 AKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRP-ADIETTALGAAFAAGLAIGV 397 (447)
Q Consensus 328 ~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~-~~~e~~alGaAllA~~~~g~ 397 (447)
.++.|+++||.++.|.+. + ++.+.++.++... ...|+.|+|||+.|+.-.+.
T Consensus 367 ~i~~ViLvGGssriP~v~-~-----------------~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~ 419 (663)
T PTZ00400 367 ELNDVILVGGMTRMPKVS-E-----------------TVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE 419 (663)
T ss_pred HCcEEEEECCccCChHHH-H-----------------HHHHHhCCCcccCCCCccceeeccHHHHHhhcCC
Confidence 379999999999999999 9 9999999877544 45778999999999875553
No 48
>PRK13411 molecular chaperone DnaK; Provisional
Probab=93.86 E-value=0.14 Score=56.86 Aligned_cols=52 Identities=25% Similarity=0.163 Sum_probs=42.7
Q ss_pred CccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC-Cceee-cCCCCccHHHHHHHHHHhcCC
Q 036892 328 AKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG-SPVIR-PADIETTALGAAFAAGLAIGV 397 (447)
Q Consensus 328 ~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~-~pV~~-~~~~e~~alGaAllA~~~~g~ 397 (447)
.++.|+++||.++.|... + ++.+.++ .++.. ....|+.|+|||+.|+.-.+.
T Consensus 327 ~id~ViLvGGssriP~v~-~-----------------~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~ 380 (653)
T PRK13411 327 DIDRVILVGGSTRIPAVQ-E-----------------AIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE 380 (653)
T ss_pred HCcEEEEECCCCCcchHH-H-----------------HHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC
Confidence 378999999999999999 9 9999996 55544 456789999999999865543
No 49
>PRK11678 putative chaperone; Provisional
Probab=93.75 E-value=0.3 Score=51.87 Aligned_cols=77 Identities=16% Similarity=0.148 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG 371 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~ 371 (447)
++.++- .+++.+.-.+...++..-+..+.. ++.|+++||.++.|... + ++.+.++
T Consensus 370 tR~efe-~ii~~~l~ri~~~i~~~L~~a~~~------~d~VvLvGGsSriP~V~-~-----------------~l~~~fg 424 (450)
T PRK11678 370 SQQGLE-EAISQPLARILELVQLALDQAQVK------PDVIYLTGGSARSPLIR-A-----------------ALAQQLP 424 (450)
T ss_pred CHHHHH-HHHHHHHHHHHHHHHHHHHHcCCC------CCEEEEcCcccchHHHH-H-----------------HHHHHCC
Confidence 454443 223444444444444433445666 68999999999999999 9 9999996
Q ss_pred -CceeecCCCCccHHHHHHHHHH
Q 036892 372 -SPVIRPADIETTALGAAFAAGL 393 (447)
Q Consensus 372 -~pV~~~~~~e~~alGaAllA~~ 393 (447)
.|+...+..++.|.|+|+.|..
T Consensus 425 ~~~v~~g~~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 425 GIPIVGGDDFGSVTAGLARWAQV 447 (450)
T ss_pred CCcEEeCCCcchHHHHHHHHHHh
Confidence 6888888888999999998854
No 50
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=93.58 E-value=0.13 Score=51.97 Aligned_cols=45 Identities=20% Similarity=0.081 Sum_probs=39.6
Q ss_pred EEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCC-CCccHHHHHHHHHH
Q 036892 331 LLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPAD-IETTALGAAFAAGL 393 (447)
Q Consensus 331 ~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~-~e~~alGaAllA~~ 393 (447)
.|+++||.++-+.+. + ++.+.++.||.+... .++.|+|||+.+..
T Consensus 279 ~IvL~GG~s~ipgl~-~-----------------~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 279 GIVLTGGGALLRGLD-K-----------------LLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred CEEEECchhhhhHHH-H-----------------HHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 499999999999998 9 999999999998774 55799999999865
No 51
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=93.42 E-value=0.38 Score=49.59 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhcc-
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLL- 370 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl- 370 (447)
+++|+++.+.|-.|..+.+.++.+. .+ +++|+++|||++|+.++++ +...+
T Consensus 258 ~~~D~~aTlt~~TA~sI~~~i~~~~----~~------~~~v~v~GGGa~N~~L~~~------------------L~~~l~ 309 (364)
T PF03702_consen 258 SPEDILATLTEFTAQSIADAIRRFP----PQ------PDEVYVCGGGARNPFLMER------------------LQERLP 309 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-----TT-------EEEEEESGGGG-HHHHHH------------------HHHH-T
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcC----CC------CceEEEECCCcCCHHHHHH------------------HHhhCC
Confidence 5899999999999988887776653 23 5899999999999999944 44444
Q ss_pred CCceeecCC----CC-ccHHHHHHHHHHhc-CCCCCHHH
Q 036892 371 GSPVIRPAD----IE-TTALGAAFAAGLAI-GVFKEEEI 403 (447)
Q Consensus 371 ~~pV~~~~~----~e-~~alGaAllA~~~~-g~~~~~~~ 403 (447)
+.+|...+. .+ --|+.=|++|...+ |.-.++..
T Consensus 310 ~~~v~~~~~~gi~~~~~EA~aFA~La~~~~~g~~~~lp~ 348 (364)
T PF03702_consen 310 GIPVKTTDELGIPPDAKEAMAFAWLAYRRLNGLPNNLPS 348 (364)
T ss_dssp TCEEEEGGGGTS-CCCHHHHHHHHHHHHHHCT---S-HH
T ss_pred CCEEecHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 346765441 12 25777777777654 44444443
No 52
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=93.33 E-value=0.27 Score=50.62 Aligned_cols=75 Identities=24% Similarity=0.178 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG 371 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~ 371 (447)
+++|+++-+.|-.|.++.+.+..+. .. .++|+++|||++|+.++ + .+...+.
T Consensus 260 s~~D~~aTlt~~TA~sI~~~~~~~~----~~------~~~vlv~GGGa~N~~Lm-~-----------------~L~~~l~ 311 (365)
T PRK09585 260 SPEDVQATLTELTAASIARAVRRLP----PG------PDELLVCGGGARNPTLM-E-----------------RLAALLP 311 (365)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcc----CC------CCEEEEECCCcchHHHH-H-----------------HHHHhcC
Confidence 6788999988888888777764432 22 46899999999999999 6 6666655
Q ss_pred CceeecCC--CCc---cHHHHHHHHHHh
Q 036892 372 SPVIRPAD--IET---TALGAAFAAGLA 394 (447)
Q Consensus 372 ~pV~~~~~--~e~---~alGaAllA~~~ 394 (447)
.+|...++ -.+ -|+.-|++|...
T Consensus 312 ~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 312 TEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred CcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 45554433 122 355556666544
No 53
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=93.22 E-value=0.21 Score=55.56 Aligned_cols=50 Identities=20% Similarity=0.115 Sum_probs=42.4
Q ss_pred ccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC-Cce-eecCCCCccHHHHHHHHHHhcC
Q 036892 329 KFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG-SPV-IRPADIETTALGAAFAAGLAIG 396 (447)
Q Consensus 329 ~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~-~pV-~~~~~~e~~alGaAllA~~~~g 396 (447)
++.|+++||.++-|... + ++.+.++ .++ ......|+.|+|||+.|+.-.+
T Consensus 333 i~~ViLvGGssriP~v~-~-----------------~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 333 VHEVVLVGGSTRIPKVQ-S-----------------LIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred CcEEEEECCCCCChhHH-H-----------------HHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcC
Confidence 78999999999999999 9 9999996 455 4456678999999999987554
No 54
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=93.20 E-value=0.48 Score=48.83 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=49.6
Q ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhh
Q 036892 292 SQLHIA---RAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSAD 368 (447)
Q Consensus 292 ~~~~l~---rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Ad 368 (447)
...++. +..+|-+... .++.+.+.+|.+ +.|.++||.+.|-.++ + .+.+
T Consensus 134 ~~~dlAa~~Q~~~E~~v~~---~~~~~~~~~g~~-------~~L~laGGvaLN~~~N-~-----------------~l~~ 185 (360)
T PF02543_consen 134 RHADLAASAQKVLEEIVLH---LVRHLLERTGID-------NNLCLAGGVALNCKAN-G-----------------RLLE 185 (360)
T ss_dssp S-HHHHHHHHHHHHHHHHH---HHHHHHHHHT---------SEEEEESGGGG-HHHH-H-----------------HHHT
T ss_pred hHHHHHHHHHHHHHHHHHH---HHHHHHHHhCCC-------CeEEEechHHHHHHHH-H-----------------HHHh
Confidence 455555 5555555554 444444445643 4499999999999999 7 7776
Q ss_pred ccCC-ceeecC--CCCccHHHHHHHHHHhcCC
Q 036892 369 LLGS-PVIRPA--DIETTALGAAFAAGLAIGV 397 (447)
Q Consensus 369 vl~~-pV~~~~--~~e~~alGaAllA~~~~g~ 397 (447)
-.+. .|.+++ .++++++|||+.+....+.
T Consensus 186 ~~~~~~v~V~Pa~gD~G~aiGaA~~~~~~~~~ 217 (360)
T PF02543_consen 186 EPGFDNVFVPPAAGDAGLAIGAALYAWHELGG 217 (360)
T ss_dssp STT-SEEE--TTTSGGGHHHHHHHHHHHHTT-
T ss_pred cCCCCeEEECCCCCCcchHHHHHHHHHHHhcC
Confidence 6554 477766 4668999999999877654
No 55
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=93.00 E-value=0.16 Score=51.22 Aligned_cols=44 Identities=20% Similarity=0.102 Sum_probs=38.9
Q ss_pred EEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCC-CCccHHHHHHHHH
Q 036892 331 LLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPAD-IETTALGAAFAAG 392 (447)
Q Consensus 331 ~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~-~e~~alGaAllA~ 392 (447)
.|+++||+++-+.+. + ++++.++.||.+... .++.++|||+++.
T Consensus 283 ~IvL~GG~s~ipg~~-~-----------------~l~~~~~~~v~~~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 283 GIVLTGGGALLRGLD-K-----------------LLSEETGLPVHIAEDPLTCVARGTGKALE 327 (335)
T ss_pred CEEEECchhcchhHH-H-----------------HHHHHHCCCceecCCHHHHHHHHHHHHHh
Confidence 499999999999999 9 999999999988764 5579999999875
No 56
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=92.82 E-value=1 Score=45.74 Aligned_cols=96 Identities=22% Similarity=0.221 Sum_probs=60.9
Q ss_pred ccchHHHHHH-HHHHcCCCCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccccccCCccEEE
Q 036892 257 VAIAGAAVQW-LRDSLGVISSASEIEELALQVH-KQGSQLHIARAVLESMCFQVKDVLDSLQKDA-VEKGVIKDAKFLLR 333 (447)
Q Consensus 257 ~~~~G~~~~W-~~~~~~~~~~~~~l~~~a~~~~-~~g~~~~l~rAvlEgia~~~~~~l~~l~~~~-g~~~~~~~~~~~i~ 333 (447)
++.||..+.. +.+.++. ++++-++.-.+.. +.....+.++..++-++-++++.++-..... +.+ +++|+
T Consensus 208 i~~G~~~l~~~i~~~~~i--~~~~Ae~~k~~~~l~~~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~------i~~I~ 279 (340)
T PF11104_consen 208 IPIGGNDLTEAIARELGI--DFEEAEELKRSGGLPEEYDQDALRPFLEELAREIRRSLDFYQSQSGGES------IERIY 279 (340)
T ss_dssp ES-SHHHHHHHHHHHTT----HHHHHHHHHHT------HHHHHHHHHHHHHHHHHHHHHHHHHH------------SEEE
T ss_pred EeeCHHHHHHHHHHhcCC--CHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC------CCEEE
Confidence 3445665543 4455654 4554444332211 1124567889999999999999999766433 444 89999
Q ss_pred EeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecC
Q 036892 334 VDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPA 378 (447)
Q Consensus 334 ~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~ 378 (447)
++||+++-+-+. + .+++.||.||.+.+
T Consensus 280 L~Ggga~l~gL~-~-----------------~l~~~l~~~v~~~~ 306 (340)
T PF11104_consen 280 LSGGGARLPGLA-E-----------------YLSEELGIPVEVIN 306 (340)
T ss_dssp EESGGGGSTTHH-H-----------------HHHHHHTSEEEE--
T ss_pred EECCccchhhHH-H-----------------HHHHHHCCceEEcC
Confidence 999999999999 8 89999999999764
No 57
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=92.38 E-value=0.22 Score=50.42 Aligned_cols=44 Identities=23% Similarity=0.108 Sum_probs=39.0
Q ss_pred EEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCC-CCccHHHHHHHHH
Q 036892 331 LLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPAD-IETTALGAAFAAG 392 (447)
Q Consensus 331 ~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~-~e~~alGaAllA~ 392 (447)
.|+++||+++=|.+. + ++++.++.||.+..+ .++.|+|||+++.
T Consensus 282 ~IvL~GGss~ipgl~-e-----------------~l~~~~~~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 282 GIVLTGGGALLRNLD-K-----------------LLSKETGLPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred CEEEECcccchhhHH-H-----------------HHHHHHCCCceecCChHHHHHHHHHHHHh
Confidence 699999999999998 9 999999999998874 5579999999864
No 58
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=92.13 E-value=4.8 Score=39.93 Aligned_cols=42 Identities=17% Similarity=-0.050 Sum_probs=25.6
Q ss_pred CCcEEeccchhHHhhhc-----CCC-CCCcEEEEecccceeccccCccc
Q 036892 186 GIPISGCLGDHHAAMLG-----QAC-KKGEVKSTYGTGAFILLNTGEEV 228 (447)
Q Consensus 186 g~pV~~g~gD~~aa~lg-----~g~-~~g~~~~s~GTs~~i~~~~~~~~ 228 (447)
++||+. ..|..++++| .+. .+.-+++++||+--..++.+.+.
T Consensus 97 ~~pV~i-eNDa~aaalaE~~~g~~~~~~~~~~l~~gtGiG~giv~~G~l 144 (303)
T PRK13310 97 GRDVRL-DNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVFNGKP 144 (303)
T ss_pred CCCeEE-eccHhHHHHHHhhhccccCCCcEEEEEecCceEEEEEECCEE
Confidence 667664 4788887765 222 35557889999854444443343
No 59
>PRK14878 UGMP family protein; Provisional
Probab=91.99 E-value=0.62 Score=47.23 Aligned_cols=74 Identities=15% Similarity=0.050 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhcc-
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLL- 370 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl- 370 (447)
++.++.+++.+.++-.+-+......+..+ ++.|+++||.++|..++ + .+.+.+
T Consensus 213 ~~~diAa~fq~~l~~~l~~~~~~~~~~~g--------~~~vvlsGGVa~N~~L~-~-----------------~l~~~~~ 266 (323)
T PRK14878 213 RLEDVCYSLRETAFAMLVEVTERALAHTG--------KKEVLLVGGVAANRRLR-E-----------------KLEIMAE 266 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCeEEEeccHHHHHHHH-H-----------------HHHHHHH
Confidence 56889999999988888777776665444 46899999999999999 7 667666
Q ss_pred --CCceeecCCCCccHHHHHHHHH
Q 036892 371 --GSPVIRPADIETTALGAAFAAG 392 (447)
Q Consensus 371 --~~pV~~~~~~e~~alGaAllA~ 392 (447)
|.+|.+++..-.+--|+++ |.
T Consensus 267 ~~g~~v~~~~~~~~~D~GimI-A~ 289 (323)
T PRK14878 267 DRGAKFYVVPPEYAGDNGAMI-AY 289 (323)
T ss_pred HCCCEEECCCCCCCchHHHHH-HH
Confidence 7788887743344444444 44
No 60
>PRK09604 UGMP family protein; Validated
Probab=91.77 E-value=0.58 Score=47.62 Aligned_cols=81 Identities=25% Similarity=0.184 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhcc-
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLL- 370 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl- 370 (447)
++.++.+++.+.++-.+.+.++...+..+ ++.|+++||.++|..++ + .+.+.+
T Consensus 226 ~~~~iA~s~q~~l~~~l~~~~~~~~~~~~--------~~~lvlsGGVa~N~~L~-~-----------------~l~~~~~ 279 (332)
T PRK09604 226 TKADIAASFQAAVVDVLVIKTKRALKQTG--------VKTLVVAGGVAANSGLR-E-----------------RLAELAK 279 (332)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCeEEEcChHHHHHHHH-H-----------------HHHHHHH
Confidence 46788888888888888777776655444 56899999999999999 8 777777
Q ss_pred --CCceeecCC----CCccHHHHHHHHHHhcCCC
Q 036892 371 --GSPVIRPAD----IETTALGAAFAAGLAIGVF 398 (447)
Q Consensus 371 --~~pV~~~~~----~e~~alGaAllA~~~~g~~ 398 (447)
|.+|.+++. +.+.++|+|-+-..-.|..
T Consensus 280 ~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g~~ 313 (332)
T PRK09604 280 KRGIEVFIPPLKLCTDNAAMIAAAGYERLKAGEF 313 (332)
T ss_pred HCCCEEECCCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence 677777653 4456666665555445543
No 61
>PRK09557 fructokinase; Reviewed
Probab=91.11 E-value=9.1 Score=37.95 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=25.6
Q ss_pred CCcEEeccchhHHhhhcC---CC---CCCcEEEEecccceeccccCccc
Q 036892 186 GIPISGCLGDHHAAMLGQ---AC---KKGEVKSTYGTGAFILLNTGEEV 228 (447)
Q Consensus 186 g~pV~~g~gD~~aa~lg~---g~---~~g~~~~s~GTs~~i~~~~~~~~ 228 (447)
++||+.- .|..|+++|- |. ..+-+++++||+--..++.+.+.
T Consensus 97 ~~pv~~~-NDa~aaA~aE~~~g~~~~~~~~~~l~igtGiG~giv~~G~l 144 (301)
T PRK09557 97 NREVRLA-NDANCLAVSEAVDGAAAGKQTVFAVIIGTGCGAGVAINGRV 144 (301)
T ss_pred CCCEEEc-cchhHHHHHHHHhcccCCCCcEEEEEEccceEEEEEECCEE
Confidence 5676643 7888888763 33 23446789999854444443333
No 62
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=90.96 E-value=2.8 Score=42.57 Aligned_cols=77 Identities=22% Similarity=0.172 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhcc-
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLL- 370 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl- 370 (447)
++.++..+..|.+.-.+.+..+...+..+ .++++++||.+.|..++ + ++....
T Consensus 233 d~~dia~sfQ~av~~~L~~kt~rAl~~~~--------~~~lvi~GGVaaN~~LR-~-----------------~l~~~~~ 286 (342)
T COG0533 233 DKEDIAASFQEAVFDMLVEKTERALKHTG--------KKELVIAGGVAANSRLR-E-----------------MLEEMCK 286 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEeccHHHhHHHH-H-----------------HHHHHHH
Confidence 36778888888888777776665544444 46899999999999999 8 777765
Q ss_pred --CCceeecCCCCccHHHHHHHHHHhc
Q 036892 371 --GSPVIRPADIETTALGAAFAAGLAI 395 (447)
Q Consensus 371 --~~pV~~~~~~e~~alGaAllA~~~~ 395 (447)
|..+..++. +-+.==+||+|..|.
T Consensus 287 ~~g~~~~~p~~-~lCtDNaaMIA~ag~ 312 (342)
T COG0533 287 ERGAEVYIPPL-ELCTDNAAMIAYAGL 312 (342)
T ss_pred hcCCEEEcCCh-HhccchHHHHHHHHH
Confidence 334666553 333334567775554
No 63
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=90.65 E-value=0.98 Score=44.17 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCce
Q 036892 295 HIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPV 374 (447)
Q Consensus 295 ~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV 374 (447)
.....+++..+..+.+.+..+.+..+.. ...|++.||..+|..+... +.+-+...+...|+
T Consensus 193 ~~a~~Il~~a~~~la~~i~~~~~~~~~~------~~~v~l~GGv~~~~~~~~~-------------l~~~l~~~~~~~~~ 253 (271)
T PF01869_consen 193 EVARDILAEAADELAELIKAVLKRLGPE------KEPVVLSGGVFKNSPLVKA-------------LRDALKEKLPKVPI 253 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTCC------CCSEEEESGGGGCHHHHHH-------------HGGGS-HHHHCCTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCC------CCeEEEECCccCchHHHHH-------------HHHHHHHhcCCCce
Confidence 3344455555555555555444433332 2339999999999665512 01113355556677
Q ss_pred eecCCC-CccHHHHHHHH
Q 036892 375 IRPADI-ETTALGAAFAA 391 (447)
Q Consensus 375 ~~~~~~-e~~alGaAllA 391 (447)
.++... ...++|||++|
T Consensus 254 ~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 254 IIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp ECECCGSSHHHHHHHHHH
T ss_pred EECCCCCccHHHHHHHhC
Confidence 666653 46999999987
No 64
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.35 E-value=0.57 Score=51.20 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCc
Q 036892 294 LHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSP 373 (447)
Q Consensus 294 ~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~p 373 (447)
+++..-+++=+-.-+...+.. ++.. ..+++.|=++||.++.|... + ++++.+|++
T Consensus 306 Eel~~plL~rv~~p~~~~l~d----~~l~---~edi~~VEiVGg~sripaik-e-----------------~Is~~Fgke 360 (727)
T KOG0103|consen 306 EELSAPLLERVEVPLLKALAD----AKLK---VEDIHAVEIVGGLSRIPAIK-E-----------------MISDFFGKE 360 (727)
T ss_pred HHHHHHHHHhhhHHHHHHHHH----hcCc---cccceeEEEecCcccchHHH-H-----------------HHHHHhCCc
Confidence 444555555555544444433 3333 12277999999999999999 9 999999999
Q ss_pred eeecC-CCCccHHHHHHHHHH
Q 036892 374 VIRPA-DIETTALGAAFAAGL 393 (447)
Q Consensus 374 V~~~~-~~e~~alGaAllA~~ 393 (447)
..+.- .+|+.|+||||.+|.
T Consensus 361 ~s~TlN~dEavarG~ALqcAI 381 (727)
T KOG0103|consen 361 LSRTLNQDEAVARGAALQCAI 381 (727)
T ss_pred ccccccHHHHHHHhHHHHHHh
Confidence 97654 588999999998875
No 65
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=90.28 E-value=0.56 Score=47.67 Aligned_cols=44 Identities=16% Similarity=0.103 Sum_probs=38.0
Q ss_pred cc-EEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCC-CCccHHHHHHH
Q 036892 329 KF-LLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPAD-IETTALGAAFA 390 (447)
Q Consensus 329 ~~-~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~-~e~~alGaAll 390 (447)
++ .|+++||+|+=+.+. + ++++.++.||.+..+ .++.++||++.
T Consensus 278 ~~~gIvLtGG~s~lpgl~-e-----------------~l~~~~~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 278 VDRGVILTGGGALLNGIK-E-----------------WLSEEIVVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred cCCCEEEEchhhhhhhHH-H-----------------HHHHHHCCCceeCCCHHHHHHHHHHHH
Confidence 55 599999999999998 9 999999999998754 45799999876
No 66
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=90.08 E-value=0.58 Score=52.45 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG 371 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~ 371 (447)
++.++.+++.++++-.+.+.++.+.+..+ ++.|+++||.++|..++ + .+.+.++
T Consensus 630 ~~~~IAa~fh~tla~~L~~~a~~~~~~~g--------~~~VvLSGGVfqN~~L~-~-----------------~L~~~L~ 683 (711)
T TIGR00143 630 DRSKIAHIAHKFVASGLVEIATAIAVPFG--------IHKIVISGGVFYNRLLL-E-----------------RLAKYLK 683 (711)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCeEEEeccHHHHHHHH-H-----------------HHHHHHH
Confidence 56788888888888777777666654334 46899999999999999 7 6666553
Q ss_pred ---CceeecC----CCCccHHHHHHHHH
Q 036892 372 ---SPVIRPA----DIETTALGAAFAAG 392 (447)
Q Consensus 372 ---~pV~~~~----~~e~~alGaAllA~ 392 (447)
..|..+. .+.+.++|.|++|+
T Consensus 684 ~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 684 GLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred hCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 6665543 45678888887763
No 67
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=89.47 E-value=1.4 Score=45.04 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhcc-
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLL- 370 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl- 370 (447)
+.+|+.+.+.|-.+-.+-+.+..+ ... .++++|+||+.+|+++| + .+|.++
T Consensus 264 ~a~Dv~aTL~eltA~tIv~s~~~~----~~~------p~~l~vcGGG~~N~llm-~-----------------rLa~l~~ 315 (371)
T COG2377 264 NAEDVQATLVELTAATIVKSVATL----QGD------PRRLVVCGGGRRNPLLM-A-----------------RLAALLE 315 (371)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhc----cCC------CceeEeecCCccCHHHH-H-----------------HHHHhcC
Confidence 788889998887777766555422 233 58999999999999999 9 999999
Q ss_pred CCceee
Q 036892 371 GSPVIR 376 (447)
Q Consensus 371 ~~pV~~ 376 (447)
|.+|..
T Consensus 316 g~~V~~ 321 (371)
T COG2377 316 GVEVAT 321 (371)
T ss_pred CCeeee
Confidence 545553
No 68
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=89.43 E-value=1.1 Score=49.07 Aligned_cols=182 Identities=21% Similarity=0.236 Sum_probs=104.6
Q ss_pred CCCcEEeccchhHHhhhcCCC-C--CCc-EEEEecccceeccccCccccccCCCceeeeccccCCCCCCceeecccccch
Q 036892 185 TGIPISGCLGDHHAAMLGQAC-K--KGE-VKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIA 260 (447)
Q Consensus 185 ~g~pV~~g~gD~~aa~lg~g~-~--~g~-~~~s~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 260 (447)
+|.+|+--.-+-.||+++.|. . +.. ++.=+|-+.+=..+. + - . .|.....+ ..|.-.++| -..-
T Consensus 146 aGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll-~-~--~-~g~~ev~a------t~gd~~LGG-ddfD 213 (579)
T COG0443 146 AGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLL-E-I--G-DGVFEVLA------TGGDNHLGG-DDFD 213 (579)
T ss_pred cCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEE-E-E--c-CCEEEEee------cCCCcccCc-hhHH
Confidence 466666666777889888887 3 323 223344443311111 1 0 0 12221111 112223333 3334
Q ss_pred HHHHHHHHHHcCCCC-----C----HHHHHHHHHhcCC---------------CCC---HHHHHHHHHHHHHHHHH-HHH
Q 036892 261 GAAVQWLRDSLGVIS-----S----ASEIEELALQVHK---------------QGS---QLHIARAVLESMCFQVK-DVL 312 (447)
Q Consensus 261 G~~~~W~~~~~~~~~-----~----~~~l~~~a~~~~~---------------~g~---~~~l~rAvlEgia~~~~-~~l 312 (447)
-..++|+.+.|.... . +..|.+.++.... +++ .-.|.|+-+|.+...+- +.+
T Consensus 214 ~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~ 293 (579)
T COG0443 214 NALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTI 293 (579)
T ss_pred HHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 567888888774321 1 2223344333210 113 56688888888776532 222
Q ss_pred H---HHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeec-CCCCccHHHHH
Q 036892 313 D---SLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRP-ADIETTALGAA 388 (447)
Q Consensus 313 ~---~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~-~~~e~~alGaA 388 (447)
+ ...+..+.+ ...++.|.++||.++-|... + .+++.+++++... ...|+.|+|||
T Consensus 294 ~~~~~al~~a~l~---~~~I~~VilvGGstriP~V~-~-----------------~v~~~f~~~~~~~inpdeava~GAa 352 (579)
T COG0443 294 EPVEQALKDAGLE---KSDIDLVILVGGSTRIPAVQ-E-----------------LVKEFFGKEPEKSINPDEAVALGAA 352 (579)
T ss_pred HHHHHHHHHcCCC---hhhCceEEEccceeccHHHH-H-----------------HHHHHhCccccccCCccHHHHHHHH
Confidence 2 222234443 34589999999999999998 9 9999999666554 46789999999
Q ss_pred HHHHHhcCCCC
Q 036892 389 FAAGLAIGVFK 399 (447)
Q Consensus 389 llA~~~~g~~~ 399 (447)
+.|+.-.|...
T Consensus 353 ~qa~~l~~~~~ 363 (579)
T COG0443 353 IQAAVLSGEVP 363 (579)
T ss_pred HHHHhhcCccc
Confidence 99998777644
No 69
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=89.20 E-value=1 Score=45.53 Aligned_cols=62 Identities=23% Similarity=0.182 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhcc-
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLL- 370 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl- 370 (447)
++.++.+++.+.++-.+.+.+....+..+ ++.|+++||.++|..++ + .+.+.+
T Consensus 231 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~~--------~~~v~lsGGVa~N~~l~-~-----------------~l~~~~~ 284 (314)
T TIGR03723 231 DKADIAASFQAAVVDVLVEKTKRALKKTG--------LKTLVVAGGVAANSRLR-E-----------------RLEELAE 284 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCeEEEeccHHHHHHHH-H-----------------HHHHHHH
Confidence 46889999999998888887776655444 56899999999999999 7 666666
Q ss_pred --CCceeecCC
Q 036892 371 --GSPVIRPAD 379 (447)
Q Consensus 371 --~~pV~~~~~ 379 (447)
+.++.+++.
T Consensus 285 ~~~~~v~~~~~ 295 (314)
T TIGR03723 285 KAGLEVFIPPL 295 (314)
T ss_pred HCCCEEECCCC
Confidence 777777654
No 70
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=88.94 E-value=21 Score=35.61 Aligned_cols=85 Identities=22% Similarity=0.094 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccc-cHHHHHhhhhhcccCccccccchhhhhhc-cC
Q 036892 294 LHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDA-NLALLLSFEKYYYFPFLSFSYFECRSADL-LG 371 (447)
Q Consensus 294 ~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~-s~~~~~q~~~~~~~~~~~~~~~~~~~Adv-l~ 371 (447)
..++|=.=|-++-.++.++..+-. ...+ ...-.|+++||.-+ +++|.+- |+.-+++. .-
T Consensus 234 ~~ifr~Ag~~Lg~~V~aVl~~l~~-~~k~----g~~l~Iv~vG~V~~Sw~~l~~G--------------fl~sls~~~~f 294 (336)
T KOG1794|consen 234 AEIFRNAGETLGRHVVAVLPQLPP-TLKK----GKTLPIVCVGGVFDSWDLLQEG--------------FLDSLSDTRGF 294 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc-hhcc----cCcceEEEEcchhhHHHHHHHH--------------HHHHhhcccCc
Confidence 344444445555555555544422 1111 11357889999755 5888733 22233332 11
Q ss_pred CceeecCCCCccHHHHHHHHHHhcCC
Q 036892 372 SPVIRPADIETTALGAAFAAGLAIGV 397 (447)
Q Consensus 372 ~pV~~~~~~e~~alGaAllA~~~~g~ 397 (447)
..++....++.+|+|||++|+.-.++
T Consensus 295 ~~~~l~~~k~ssAvgAA~laa~~~~~ 320 (336)
T KOG1794|consen 295 ERVELYRPKESSAVGAAILAASLDNI 320 (336)
T ss_pred cceEEEeecccchHHHHHHhhhhccc
Confidence 23555566788999999999876553
No 71
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=87.90 E-value=16 Score=36.40 Aligned_cols=42 Identities=29% Similarity=0.306 Sum_probs=27.4
Q ss_pred CCcEEeccchhHHhhhc-----CCC-CCCcEEEEecccceeccccCccc
Q 036892 186 GIPISGCLGDHHAAMLG-----QAC-KKGEVKSTYGTGAFILLNTGEEV 228 (447)
Q Consensus 186 g~pV~~g~gD~~aa~lg-----~g~-~~g~~~~s~GTs~~i~~~~~~~~ 228 (447)
|+||+. ..|..++++| .+. .++-+++++||+--..++.+.+.
T Consensus 98 ~~pv~v-~NDa~~~alaE~~~g~~~~~~~~~~v~igtGiG~giv~~G~~ 145 (318)
T TIGR00744 98 GLPVVV-ENDANAAALGEYKKGAGKGARDVICITLGTGLGGGIIINGEI 145 (318)
T ss_pred CCCEEE-echHHHHHHHHHHhcccCCCCcEEEEEeCCccEEEEEECCEE
Confidence 677664 4788888874 444 46668899999855444443343
No 72
>PLN02902 pantothenate kinase
Probab=87.41 E-value=11 Score=42.91 Aligned_cols=46 Identities=7% Similarity=-0.042 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecccccc-HHHH
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDAN-LALL 345 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s-~~~~ 345 (447)
+++|++|+++--|++++-++.-...+..+ +++|+++|...++ +.-|
T Consensus 318 s~eDiarSLL~mIs~NIGqiA~L~A~~~~--------ikrIvF~G~fIr~h~~tm 364 (876)
T PLN02902 318 RPEDISLSLLRMISYNIGQISYLNALRFG--------LKRIFFGGFFIRGHAYTM 364 (876)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCEEEEecceecCCcchH
Confidence 48999999999999998887654444333 6789999998775 4444
No 73
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=87.10 E-value=1.9 Score=46.33 Aligned_cols=78 Identities=19% Similarity=0.128 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG 371 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~ 371 (447)
+-+..+++.+|-+...+.+.+ .+..| .+.|.+.||.+.|-.|+.+ ++...++
T Consensus 260 diAasaQ~~lE~l~l~~~~~~---~~~~g--------~~~L~~AGGVAlNv~~N~~-----------------~l~~~~f 311 (555)
T COG2192 260 DIAASAQAYLEELVLEMLRYL---REETG--------EDNLALAGGVALNVKANGK-----------------LLRRGLF 311 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHhC--------ccceEEccceeeeeeehHh-----------------HhhcccC
Confidence 445556788899888866554 33345 3689999999999999977 8888999
Q ss_pred CceeecC--CCCccHHHHHHHHHHhcCC
Q 036892 372 SPVIRPA--DIETTALGAAFAAGLAIGV 397 (447)
Q Consensus 372 ~pV~~~~--~~e~~alGaAllA~~~~g~ 397 (447)
..|.+.+ .+.+.|+|||+.+..-.+.
T Consensus 312 ~dlfV~Pa~gD~G~AvGAAl~~~~~~~~ 339 (555)
T COG2192 312 EDLFVQPAMGDAGLAVGAALAVKRELGG 339 (555)
T ss_pred ceeEecCCCCCcchHHHHHHHHHHHhcC
Confidence 8888877 4668999999999876553
No 74
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=86.86 E-value=2.2 Score=44.78 Aligned_cols=64 Identities=11% Similarity=0.028 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhc
Q 036892 293 QLHIARAVLESMCFQVKDVLDSLQKD---AVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADL 369 (447)
Q Consensus 293 ~~~l~rAvlEgia~~~~~~l~~l~~~---~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Adv 369 (447)
..+++++-+|-|.-.+++.++.+.+. .+.. ...+..|+++||+++=+.+. + ++.++
T Consensus 293 l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~---~~~~~givLtGG~a~lpgi~-e-----------------~~~~~ 351 (420)
T PRK09472 293 LAEVIEPRYTELLNLVNEEILQLQEQLRQQGVK---HHLAAGIVLTGGAAQIEGLA-A-----------------CAQRV 351 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---ccCCCEEEEeCchhccccHH-H-----------------HHHHH
Confidence 45567777777776677766554322 2221 11257799999999999998 8 88888
Q ss_pred cCCceeec
Q 036892 370 LGSPVIRP 377 (447)
Q Consensus 370 l~~pV~~~ 377 (447)
|+.||.+.
T Consensus 352 f~~~vri~ 359 (420)
T PRK09472 352 FHTQVRIG 359 (420)
T ss_pred hCCCeEEe
Confidence 88888774
No 75
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=86.68 E-value=2.5 Score=45.78 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhcc-
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLL- 370 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl- 370 (447)
+..++.+++.+.++-.+-+.+....+..| ++.|+++||.++|..++ + .+.+.+
T Consensus 217 ~~~~iA~~~q~~l~~~l~~~~~~~~~~~g--------~~~lvlsGGVa~N~~l~-~-----------------~l~~~~~ 270 (535)
T PRK09605 217 PLEDVCYSLQETAFAMLTEVTERALAHTG--------KDEVLLVGGVAANNRLR-E-----------------MLKEMCE 270 (535)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCeEEEeccHHHHHHHH-H-----------------HHHHHHH
Confidence 56889999999998888887777655455 46899999999999999 7 666443
Q ss_pred --CCceeecC----CCCccHHHHHHHHHH
Q 036892 371 --GSPVIRPA----DIETTALGAAFAAGL 393 (447)
Q Consensus 371 --~~pV~~~~----~~e~~alGaAllA~~ 393 (447)
+.+|.+++ .+++.++|+|.....
T Consensus 271 ~~~~~v~~~~~~~~~D~g~~ia~a~~~~~ 299 (535)
T PRK09605 271 ERGADFYVPEPRFCGDNGAMIAWLGLLMY 299 (535)
T ss_pred HCCCEEECCCCccccchHHHHHHHHHHHH
Confidence 66777765 356778877765443
No 76
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=86.20 E-value=1.5 Score=44.55 Aligned_cols=84 Identities=25% Similarity=0.214 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCcee
Q 036892 296 IARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVI 375 (447)
Q Consensus 296 l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~ 375 (447)
-+.|.+|+++-.+...+ ... .+ ++.|+++|-.++++-+. . .++..+.+.++.+|.
T Consensus 239 a~ea~~E~i~k~V~~l~----~~~-~~------~~~IilSGr~~~~~~~~-~-------------~l~~~l~~~~~~~v~ 293 (343)
T PF07318_consen 239 AWEAMIESIVKAVASLL----ASV-PD------PDEIILSGRFSRIPEFR-K-------------KLEDRLEDYFPVKVR 293 (343)
T ss_pred HHHHHHHHHHHHHHHHh----ccc-CC------CCEEEEeccccccHHHH-H-------------HHHHHHHhhccccee
Confidence 56777777766655332 212 23 57899999999997776 4 344466677776666
Q ss_pred ecCC----CCccHHHHHHHH-HHhcCCCCCHHHH
Q 036892 376 RPAD----IETTALGAAFAA-GLAIGVFKEEEIF 404 (447)
Q Consensus 376 ~~~~----~e~~alGaAllA-~~~~g~~~~~~~a 404 (447)
.... ...+|.|+|++| +.+-|.|+++-+.
T Consensus 294 ~l~~~~~~aKeaA~GaAiIA~glaGG~~~~lv~~ 327 (343)
T PF07318_consen 294 KLEGLARKAKEAAQGAAIIANGLAGGRYKELVDH 327 (343)
T ss_pred ecccccccchhhhhhHHHHhhhhhcccHHHHHHH
Confidence 5433 234899999998 4666787666544
No 77
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=86.14 E-value=2.9 Score=42.29 Aligned_cols=62 Identities=15% Similarity=0.054 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhh---
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSAD--- 368 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Ad--- 368 (447)
+..++.+++.+.++-.+.+..+...+..| ++.|.++||.++|..++ + .+.+
T Consensus 214 ~~~diAasfq~~l~~~l~~~a~~~~~~~g--------~~~lvlsGGVa~N~~L~-~-----------------~l~~~l~ 267 (322)
T TIGR03722 214 RLEDVCYSLQETAFAMLVEVTERALAHTG--------KKEVLLVGGVAANRRLR-E-----------------MLELMAE 267 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCeEEEeccHHHHHHHH-H-----------------HHHHHHH
Confidence 46888888888888888777777665444 46899999999999999 7 6666
Q ss_pred ccCCceeecCC
Q 036892 369 LLGSPVIRPAD 379 (447)
Q Consensus 369 vl~~pV~~~~~ 379 (447)
..|.+|.+++.
T Consensus 268 ~~g~~v~~~~~ 278 (322)
T TIGR03722 268 DRGAKFYVPPP 278 (322)
T ss_pred HCCCEEEcCCC
Confidence 34667776654
No 78
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=85.95 E-value=29 Score=34.06 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=19.0
Q ss_pred eeEEEEcCcccceEEEeCCCCcccc
Q 036892 23 LKAIGLTNQRETTVLWSKSTGCPLY 47 (447)
Q Consensus 23 I~aI~vs~q~~~~v~vD~~~g~pl~ 47 (447)
+.+|-|.+..-.++++|- +|+.+.
T Consensus 3 ~lgvdig~~~i~~~l~dl-~g~i~~ 26 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGE-DGQIRQ 26 (291)
T ss_pred EEEEEECCCEEEEEEEcC-CCcEEE
Confidence 667778888888889998 888764
No 79
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.76 E-value=1.8 Score=44.79 Aligned_cols=83 Identities=23% Similarity=0.195 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhh
Q 036892 293 QLHIARAVLESMCFQVKD-----VLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSA 367 (447)
Q Consensus 293 ~~~l~rAvlEgia~~~~~-----~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~A 367 (447)
.+-+.||=+|-+-..+-+ +-..|+ +++.+ +++++.|+++||.+|-|-.. | ++-
T Consensus 326 SEtLtRAkFEElNmDLFr~TlkPv~kvl~-Ds~lk---KsdideiVLVGGsTrIPKvQ-q-----------------llk 383 (663)
T KOG0100|consen 326 SETLTRAKFEELNMDLFRKTLKPVQKVLE-DSDLK---KSDIDEIVLVGGSTRIPKVQ-Q-----------------LLK 383 (663)
T ss_pred cchhhhhHHHHhhhHHHHHhhHHHHHHHh-hcCcc---cccCceEEEecCcccChhHH-H-----------------HHH
Confidence 456677777776655332 223343 35554 66799999999999999987 9 999
Q ss_pred hccC-C-ceeecCCCCccHHHHHHHHHHhcCC
Q 036892 368 DLLG-S-PVIRPADIETTALGAAFAAGLAIGV 397 (447)
Q Consensus 368 dvl~-~-pV~~~~~~e~~alGaAllA~~~~g~ 397 (447)
|-++ + |-.-....|+.|.|||..|++-.|.
T Consensus 384 ~fF~GKepskGinPdEAVAYGAAVQaGvlsGe 415 (663)
T KOG0100|consen 384 DFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE 415 (663)
T ss_pred HHhCCCCccCCCChHHHHHhhhhhhhcccccc
Confidence 9994 4 3344456789999999999876665
No 80
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=85.07 E-value=18 Score=40.13 Aligned_cols=61 Identities=13% Similarity=-0.007 Sum_probs=40.3
Q ss_pred ccEEEEecccccc--HHHHH-hhhhhcccCccccccchhhhhhccCCceeecCCCCccHHHHHHHHHHhcC
Q 036892 329 KFLLRVDGAIDAN--LALLL-SFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAAFAAGLAIG 396 (447)
Q Consensus 329 ~~~i~~~GG~s~s--~~~~~-q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~g 396 (447)
++.|++.||.+.+ +++.. .|+++|.= -..+..-+-+.||.++.+.+.+.+|||..+...+.
T Consensus 270 p~~vvigGGIs~~~~~~l~~~~f~~~f~~-------kg~~~~~~~~ipv~~i~~~~~~l~Gaa~~~~~~~~ 333 (638)
T PRK14101 270 LGGIYIGGGVVPKLGELFTRSSFRARFEA-------KGRFEAYLANIPTYLITAEYPAFLGVSAILAEQLS 333 (638)
T ss_pred CCcEEEeCcHHHHHHHHcChHHHHHHHHh-------CCChHHHHhcCCEEEEeCCChhHHHHHHHHHHHhc
Confidence 4788888888754 33331 23333321 11255555679999999999999999888877664
No 81
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=83.65 E-value=5.4 Score=40.87 Aligned_cols=76 Identities=12% Similarity=0.109 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhcc--
Q 036892 293 QLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLL-- 370 (447)
Q Consensus 293 ~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl-- 370 (447)
+.++.+++.|.++-.+.+.++...+..+ ++.|+++||.+.|..++ + .+.+.+
T Consensus 236 ~~diaasfq~~v~~~L~~k~~~a~~~~~--------~~~lvv~GGVAaN~~LR-~-----------------~l~~~~~~ 289 (345)
T PTZ00340 236 TDDLCFSLQETIFAMLVEVTERAMSHCG--------SNEVLIVGGVGCNLRLQ-E-----------------MMQQMAKE 289 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCeEEEcCCHHHHHHHH-H-----------------HHHHHHHH
Confidence 6689999999998887776665544333 57899999999999999 7 666554
Q ss_pred -CCceeecCCCCccHHHHHHHHHHhc
Q 036892 371 -GSPVIRPADIETTALGAAFAAGLAI 395 (447)
Q Consensus 371 -~~pV~~~~~~e~~alGaAllA~~~~ 395 (447)
|.++..++. +-+.==|||+|..|.
T Consensus 290 ~~~~~~~p~~-~~ctDNaaMIa~~g~ 314 (345)
T PTZ00340 290 RGGKLFAMDE-RYCIDNGAMIAYAGL 314 (345)
T ss_pred cCCEEEeCCh-HhhhhhHHHHHHHHH
Confidence 778877663 233344566665543
No 82
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=83.44 E-value=1.3 Score=45.06 Aligned_cols=44 Identities=20% Similarity=0.032 Sum_probs=35.3
Q ss_pred cEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecCCCC-ccHHHHHHHH
Q 036892 330 FLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPADIE-TTALGAAFAA 391 (447)
Q Consensus 330 ~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e-~~alGaAllA 391 (447)
+-|+++||+|.=+-+- + ++++-++.||.+.++++ +++.|+..+.
T Consensus 275 ~GI~LtGGga~l~Gl~-~-----------------~i~~~~~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 275 NGIVLTGGGALLRGLD-E-----------------YISEETGVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp H-EEEESGGGGSBTHH-H-----------------HHHHHHSS-EEE-SSTTTHHHHHHHHTT
T ss_pred CCEEEEChhhhhccHH-H-----------------HHHHHHCCCEEEcCCHHHHHHHHHHHHH
Confidence 4599999999998888 9 99999999999999766 5888886543
No 83
>PRK03011 butyrate kinase; Provisional
Probab=82.88 E-value=19 Score=37.13 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHh
Q 036892 296 IARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLS 347 (447)
Q Consensus 296 l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q 347 (447)
..+.+++.+++.+...+-.|....+.+ ++.|+++||.+.++.+.++
T Consensus 269 ~A~~ald~~~~~lak~I~~l~~~L~gd------pD~IVlgGGI~~~~~l~~~ 314 (358)
T PRK03011 269 KAKLVYEAMAYQIAKEIGAMAAVLKGK------VDAIVLTGGLAYSKRLVER 314 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC------CCEEEEeCccccCHHHHHH
Confidence 456688888888888887776544324 6899999999988877744
No 84
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=82.68 E-value=2.5 Score=42.83 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG 371 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~ 371 (447)
...++++.+++-++-++++.++......+..+ ++.|+++||+++-+-+. . .++..||
T Consensus 251 ~~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~-----i~~I~LtGgga~~~gl~-~-----------------~l~~~l~ 307 (348)
T TIGR01175 251 YDPEVLRRFKGELVDEIRRSLQFFTAQSGTNS-----LDGLVLAGGGATLSGLD-A-----------------AIYQRLG 307 (348)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc-----cceEEEECccccchhHH-H-----------------HHHHHHC
Confidence 45677899999999999988887753332222 79999999999988888 7 8888888
Q ss_pred CceeecC
Q 036892 372 SPVIRPA 378 (447)
Q Consensus 372 ~pV~~~~ 378 (447)
.||.+.+
T Consensus 308 ~~v~~~~ 314 (348)
T TIGR01175 308 LPTEVAN 314 (348)
T ss_pred CCeEecC
Confidence 8888764
No 85
>KOG2201 consensus Pantothenate kinase PanK and related proteins [Coenzyme transport and metabolism]
Probab=81.23 E-value=14 Score=37.53 Aligned_cols=46 Identities=15% Similarity=0.068 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecccccc-HHHH
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDAN-LALL 345 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s-~~~~ 345 (447)
+++++.||+|--|..++-++.-.... ... +++|+..|-..|+ +.-|
T Consensus 276 s~eDia~SlL~mIsnNIGqiAyl~A~--~~n------i~rV~FgG~fiR~~~itM 322 (371)
T KOG2201|consen 276 SKEDIARSLLRMISNNIGQIAYLCAL--NEN------IKRVYFGGFFIRGHPITM 322 (371)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHH--HhC------ccEEEEeeeEEecCceeh
Confidence 78999999999999999887544332 344 7899999998874 5555
No 86
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=79.55 E-value=4.2 Score=40.83 Aligned_cols=62 Identities=19% Similarity=0.092 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhcc-
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLL- 370 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl- 370 (447)
++.++.+++.+.++-.+-+..+...+..+ ++.|+++||.++|..++ + .+.+.+
T Consensus 230 ~~~~iAasfq~~l~~~l~~~~~~~~~~~g--------~~~vvlsGGVa~N~~L~-~-----------------~l~~~~~ 283 (305)
T TIGR00329 230 TKEDIAYSFQETAFDHLIEKTKRALKDTG--------PKELVLVGGVSANKRLR-E-----------------MLETLCQ 283 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCEEEEECCHHHHHHHH-H-----------------HHHHHHH
Confidence 47889999999988888777776655444 56899999999999999 7 666655
Q ss_pred --CCceeecCC
Q 036892 371 --GSPVIRPAD 379 (447)
Q Consensus 371 --~~pV~~~~~ 379 (447)
+.+|.+++.
T Consensus 284 ~~g~~v~~~~~ 294 (305)
T TIGR00329 284 ELNVEFYYPPL 294 (305)
T ss_pred HCCCEEECCCC
Confidence 567776653
No 87
>PRK09698 D-allose kinase; Provisional
Probab=78.13 E-value=71 Score=31.47 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=18.9
Q ss_pred eeEEEEcCcccceEEEeCCCCcccc
Q 036892 23 LKAIGLTNQRETTVLWSKSTGCPLY 47 (447)
Q Consensus 23 I~aI~vs~q~~~~v~vD~~~g~pl~ 47 (447)
+.+|-+.+..-.+.++|. +|+.+.
T Consensus 6 ~lgidig~t~i~~~l~d~-~g~i~~ 29 (302)
T PRK09698 6 VLGIDMGGTHIRFCLVDA-EGEILH 29 (302)
T ss_pred EEEEEcCCcEEEEEEEcC-CCCEEE
Confidence 677777788888888998 888763
No 88
>PTZ00297 pantothenate kinase; Provisional
Probab=76.45 E-value=41 Score=41.12 Aligned_cols=74 Identities=16% Similarity=0.086 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccc-cccHHHHHhhhhhcccCccccccchhhhhhcc
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAI-DANLALLLSFEKYYYFPFLSFSYFECRSADLL 370 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~-s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl 370 (447)
+++||.|+++-.|.+++-++.-...+. .. +++|+.+|+. ..|+..+ + .++..+
T Consensus 1363 ~~~Di~~sll~~is~nIgqia~l~a~~--~~------~~~i~f~G~~i~~~~~~~-~-----------------~l~~a~ 1416 (1452)
T PTZ00297 1363 SAIDIVRSLLNMISSNVTQLAYLHSRV--QG------VPNIFFAGGFVRDNPIIW-S-----------------HISSTM 1416 (1452)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--cC------CCEEEEecchhcCCHHHH-H-----------------HHHHHH
Confidence 378999999999999988865443332 23 7899999995 5578877 7 555554
Q ss_pred ------CCceeecCC-CCccHHHHHHHH
Q 036892 371 ------GSPVIRPAD-IETTALGAAFAA 391 (447)
Q Consensus 371 ------~~pV~~~~~-~e~~alGaAllA 391 (447)
++.-..... .-.+|+||++..
T Consensus 1417 ~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1417 KYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred HHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 333334443 446999998854
No 89
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=76.19 E-value=85 Score=31.09 Aligned_cols=42 Identities=29% Similarity=0.232 Sum_probs=27.7
Q ss_pred CCcEEeccchhHHhhhcCC-----C-CCCcEEEEecccceeccccCccc
Q 036892 186 GIPISGCLGDHHAAMLGQA-----C-KKGEVKSTYGTGAFILLNTGEEV 228 (447)
Q Consensus 186 g~pV~~g~gD~~aa~lg~g-----~-~~g~~~~s~GTs~~i~~~~~~~~ 228 (447)
++||.+- -|..|+++|-. . .+..+++++||+--..++.+.+.
T Consensus 107 ~~Pv~ve-NDan~aalaE~~~g~~~~~~~~~~i~~gtGIG~giv~~g~l 154 (314)
T COG1940 107 GLPVFVE-NDANAAALAEAWFGAGRGIDDVVYITLGTGIGGGIIVNGKL 154 (314)
T ss_pred CCCEEEe-cHHHHHHHHHHHhCCCCCCCCEEEEEEccceeEEEEECCEE
Confidence 5777764 78898887632 3 45678899999855444453333
No 90
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=74.63 E-value=6.5 Score=43.14 Aligned_cols=76 Identities=20% Similarity=0.125 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCc
Q 036892 294 LHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSP 373 (447)
Q Consensus 294 ~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~p 373 (447)
.+++|..+|-+.=.+++. ..+ +..++.|+++||.++-|... + ++.|.++..
T Consensus 311 ~dlf~~~~~~v~~~L~da--------~~d---k~~i~~vvlVGGstriPk~~-~-----------------ll~d~f~~k 361 (620)
T KOG0101|consen 311 ADLFRSTLEPVEKALKDA--------KLD---KSDIDEVVLVGGSTRIPKVQ-K-----------------LLEDFFNGK 361 (620)
T ss_pred hHHHHHHHHHHHHHHHhh--------ccC---ccCCceeEEecCcccchHHH-H-----------------HHHHHhccc
Confidence 556666666665322222 222 23389999999999999998 9 999999863
Q ss_pred eeec--CCCCccHHHHHHHHHHhcCCC
Q 036892 374 VIRP--ADIETTALGAAFAAGLAIGVF 398 (447)
Q Consensus 374 V~~~--~~~e~~alGaAllA~~~~g~~ 398 (447)
-... ...|+.|.|||+.|+.-.|..
T Consensus 362 ~~~~sinpDeavA~GAavqaa~~~g~~ 388 (620)
T KOG0101|consen 362 ELNKSINPDEAVAYGAAVQAAILSGDK 388 (620)
T ss_pred ccccCCCHHHHHHhhHHHHhhhccCCc
Confidence 3222 257899999999999877643
No 91
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=72.96 E-value=12 Score=41.43 Aligned_cols=75 Identities=24% Similarity=0.170 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG 371 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~ 371 (447)
+++.+..+...+++-.+.++...+.+..| +++|.++||..+|.+++ + -+++.+.
T Consensus 665 ~~~~iA~~fh~~la~~~~e~~~~~a~~~g--------i~~V~lsGGVf~N~~l~-~-----------------~~~~~l~ 718 (750)
T COG0068 665 EPEKIATKFHNALAEGFAELAVELAKKYG--------INKVVLSGGVFQNRLLL-E-----------------RLAKYLK 718 (750)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ccEEEeeCCeeecHHHH-H-----------------HHHHHHH
Confidence 34445555555555555555555544444 67999999999999999 8 7888777
Q ss_pred C-------ceeecCCCCccHHHHHHHHH
Q 036892 372 S-------PVIRPADIETTALGAAFAAG 392 (447)
Q Consensus 372 ~-------pV~~~~~~e~~alGaAllA~ 392 (447)
. |-.++..+.+-++|=|+.|+
T Consensus 719 ~~~f~~~~~~~~P~~DggIslGQ~v~~~ 746 (750)
T COG0068 719 KEGFRFLFHQEVPAGDGGISLGQAVAAA 746 (750)
T ss_pred hcCceEeeecccCCCCCceeHHHHHHHH
Confidence 4 23455556678999988873
No 92
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=72.64 E-value=8 Score=38.42 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC--C
Q 036892 295 HIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG--S 372 (447)
Q Consensus 295 ~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~--~ 372 (447)
.-.+-++++++|++..-+-.+.....-+ ++-|+++||.+++..++ . .+.+-+. .
T Consensus 269 ~~a~~~~~AmayQVaKeIG~~savL~G~------vDaIvLTGGiA~~~~f~-~-----------------~I~~~v~~ia 324 (358)
T COG3426 269 EKAKLAYEAMAYQVAKEIGAMSAVLKGK------VDAIVLTGGIAYEKLFV-D-----------------AIEDRVSWIA 324 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCC------CCEEEEecchhhHHHHH-H-----------------HHHHHHhhhc
Confidence 5566778889999888777776544445 79999999999999999 7 7776655 5
Q ss_pred ceeecC-CCC
Q 036892 373 PVIRPA-DIE 381 (447)
Q Consensus 373 pV~~~~-~~e 381 (447)
||.+.+ ..|
T Consensus 325 pv~v~PGE~E 334 (358)
T COG3426 325 PVIVYPGEDE 334 (358)
T ss_pred ceEecCCchH
Confidence 776655 344
No 93
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=69.92 E-value=19 Score=35.20 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=67.4
Q ss_pred chhHHhhhcCCC--CCCcEEEEecccceeccccCccccccCCCceeeeccccCCCCCCceeecccccchHHHHHHHHHHc
Q 036892 194 GDHHAAMLGQAC--KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSL 271 (447)
Q Consensus 194 gD~~aa~lg~g~--~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~ 271 (447)
.|-.++++|+.. ...-+++..||+..+..+..+ + .|.-|...||- . ..++=+.+.-
T Consensus 107 ~DR~~n~vaA~~~~~~~~vVVD~GTA~Tid~v~~~-------~-----~~lGG~I~PGi------~----l~~~aL~~~a 164 (251)
T COG1521 107 ADRIANAVAAYHKYGKAVVVVDFGTATTIDLVDEG-------G-----RYLGGAILPGI------T----LSFEALFARA 164 (251)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEcCCeEEEEEEcCC-------C-----cEeeeEeccCH------H----HHHHHHHHHH
Confidence 599999999877 222588999999887654311 1 11100012331 1 1111111111
Q ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccc
Q 036892 272 GVISSASEIEELALQVHKQGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDA 340 (447)
Q Consensus 272 ~~~~~~~~l~~~a~~~~~~g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~ 340 (447)
...+. -++.. ...++...|.+.+-.+++-|.++.++..++.+++..+.+ ..++++||.++
T Consensus 165 a~lp~-~~~~~-~~~~~gk~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~-------~~~vltGg~~~ 224 (251)
T COG1521 165 AKLPR-VEIAR-PESVPGKNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGG-------DAVVLTGGLAK 224 (251)
T ss_pred hcCCc-ccccC-ccccCCcchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC-------CeEEEeCCchH
Confidence 10000 01111 112223359999999999999999999999998765543 68999999654
No 94
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=69.52 E-value=11 Score=38.66 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=28.0
Q ss_pred ccE-EEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCceeecC
Q 036892 329 KFL-LRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIRPA 378 (447)
Q Consensus 329 ~~~-i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~ 378 (447)
++. |+++||+++-+.+. + ++.+.|+.||.+..
T Consensus 314 i~~gIvLtGG~S~ipgi~-~-----------------~l~~~~~~~vr~~~ 346 (371)
T TIGR01174 314 LNGGIVLTGGGAQLEGIV-E-----------------LAEKVFDNPVRIGL 346 (371)
T ss_pred CCCEEEEeChHHcccCHH-H-----------------HHHHHhCCCeEEEC
Confidence 555 99999999999999 8 89999999988764
No 95
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=69.27 E-value=11 Score=37.88 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecc--ccccH-HHHHhhhhhcccCccccccchhhhhhccCC
Q 036892 296 IARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGA--IDANL-ALLLSFEKYYYFPFLSFSYFECRSADLLGS 372 (447)
Q Consensus 296 l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG--~s~s~-~~~~q~~~~~~~~~~~~~~~~~~~Advl~~ 372 (447)
-++++.++++.++.-.+-. ..+ ...|+++|. ..+++ -+. . .+.+.|+.
T Consensus 241 A~dal~~~vameIasLl~l-----~~~------~~~IvLSGs~g~~r~~~~v~-~-----------------~I~~~L~~ 291 (326)
T TIGR03281 241 ALDSLAMSVAMEIASLGLL-----DCK------EAGVVLAGSGGTLREPINFS-G-----------------KIKRVLSC 291 (326)
T ss_pred HHHHHHHHHHHHHHhheec-----cCC------CCcEEEeCcchhccCchHHH-H-----------------HHHHHhCC
Confidence 3567777777775543211 123 357999987 67888 666 7 88899999
Q ss_pred ceeecCCCCccHHHHHHHHH
Q 036892 373 PVIRPADIETTALGAAFAAG 392 (447)
Q Consensus 373 pV~~~~~~e~~alGaAllA~ 392 (447)
+|.+... +.+|.|+|++|-
T Consensus 292 ~V~~L~~-ksAA~G~AiIA~ 310 (326)
T TIGR03281 292 KVLVLDS-ESAAIGLALIAE 310 (326)
T ss_pred CeEEecc-hhhhhhHHHHHH
Confidence 9998776 679999999985
No 96
>PRK00976 hypothetical protein; Provisional
Probab=68.91 E-value=21 Score=36.33 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccH--HHHHhhhhhcccCccccccchhhhhhccC
Q 036892 294 LHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANL--ALLLSFEKYYYFPFLSFSYFECRSADLLG 371 (447)
Q Consensus 294 ~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~--~~~~q~~~~~~~~~~~~~~~~~~~Advl~ 371 (447)
...++...+.++..+...+.. .+ ++.|++.||.++.+ .+. + .+.+.+.
T Consensus 241 ~~aid~~~~~LA~~IAnLi~l------lD------Pe~IVLGGGVS~~~e~~L~-~-----------------~I~e~l~ 290 (326)
T PRK00976 241 KLAIDTLALFVAMEIASLLLL------NP------EDNVVLAGSVGEMDEPDVS-E-----------------RIKELLD 290 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------cC------CCEEEEcCccccCchhHHH-H-----------------HHHHHhc
Confidence 344555555555554443322 24 58899999998875 344 3 3333333
Q ss_pred CceeecCCCCccHHHHHHHHHHh
Q 036892 372 SPVIRPADIETTALGAAFAAGLA 394 (447)
Q Consensus 372 ~pV~~~~~~e~~alGaAllA~~~ 394 (447)
.++.. -..+++++|||++|..-
T Consensus 291 ~~~a~-LG~dAGaiGAA~iA~~i 312 (326)
T PRK00976 291 KKVLV-LGKESAAIGLALIARDI 312 (326)
T ss_pred ccccc-cCCchHHHHHHHHHHHH
Confidence 33222 23578999999998653
No 97
>PRK13322 pantothenate kinase; Reviewed
Probab=65.46 E-value=33 Score=33.36 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecccc
Q 036892 290 QGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAID 339 (447)
Q Consensus 290 ~g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s 339 (447)
.+|...|...++.|++..+...++.++++.+.+ -.++++||.+
T Consensus 175 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~-------~~vilTGG~a 217 (246)
T PRK13322 175 RNTVDAVERGCLLMLRGFIESQLEQARELWGPD-------FEIFLTGGDA 217 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CEEEEECCCH
Confidence 348999999999999999999999998766544 4789999964
No 98
>PRK13327 pantothenate kinase; Reviewed
Probab=65.19 E-value=69 Score=31.13 Aligned_cols=142 Identities=15% Similarity=0.023 Sum_probs=80.5
Q ss_pred chhHHhhhcCCCCCCcEEEEecccceeccccCccccccCCCceeeeccccCCCCCCceeecccccchHHHHHHHHHHcCC
Q 036892 194 GDHHAAMLGQACKKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDSLGV 273 (447)
Q Consensus 194 gD~~aa~lg~g~~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~~~~ 273 (447)
.|-.++++|+-.+..-+++.+||...+-++..+ |. |. |.+.+=|.. ...+=|.+.-..
T Consensus 99 ~DR~~a~vaA~~~~~~lVVD~GTA~TiD~v~~~-------g~-----~l------GG~I~PG~~----lm~~aL~~~Ta~ 156 (242)
T PRK13327 99 VDRFLALLGARGDAPVLVVGVGTALTIDLLGAD-------GL-----HH------GGRIAASPT----TMREALHARAVQ 156 (242)
T ss_pred HHHHHHHHHhhcCCCEEEEEcCCceEEEEECCC-------Ce-----EE------EEEECccHH----HHHHHHHHhhcc
Confidence 599999999755445688999999877654311 10 11 112211111 111112111111
Q ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcc
Q 036892 274 ISSASEIEELALQVHKQGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYY 353 (447)
Q Consensus 274 ~~~~~~l~~~a~~~~~~g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~ 353 (447)
... ...+ ...-..+|...|...++.+++..+...++.+++..+.+ -.++++||.+ +
T Consensus 157 Lp~-~~~~---~~~~g~~T~~ai~sG~~~~~~~~I~~~i~~~~~~~~~~-------~~vilTGG~A-------~------ 212 (242)
T PRK13327 157 LPA-SGGD---YVEFANDTDDALTSGCDGAAVALIERSLQHAHRSLGQP-------VRLLVHGGGA-------P------ 212 (242)
T ss_pred CCC-Cccc---cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CEEEEECCCH-------H------
Confidence 000 1111 01112348999999999999999999999988766544 4689999964 2
Q ss_pred cCccccccchhhhhhccCCceeecCCCCccHHHHHHHHHHhc
Q 036892 354 FPFLSFSYFECRSADLLGSPVIRPADIETTALGAAFAAGLAI 395 (447)
Q Consensus 354 ~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~~~~ 395 (447)
++++.+.. .+. .++-...|-+.+|..+.
T Consensus 213 -----------~l~~~l~~-~~~--~p~LvL~GL~~~a~~~~ 240 (242)
T PRK13327 213 -----------PLLPLLPD-AEF--RPALVLDGLATWATAAA 240 (242)
T ss_pred -----------HHHHhCCC-CEE--ccCcHHHHHHHHHHhcc
Confidence 23333322 222 34678888888886553
No 99
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=65.05 E-value=44 Score=32.57 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHH
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~ 345 (447)
++.++.++++-+|.-.+-++.=...++ .. ++-|...|...+|.+..
T Consensus 249 ~p~di~~sll~aisnnigqiAyl~A~~--~n------~qNIyfgGSf~rnhl~t 294 (342)
T COG5146 249 TPSDILASLLGAISNNIGQIAYLVARE--FN------TQNIYFGGSFHRNHLLT 294 (342)
T ss_pred CcHHHHHHHHHHHhcchhhhHHHHHHh--hc------cceEEEeeeeccchhhh
Confidence 678899999988877766654333232 23 67899999888887654
No 100
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=64.54 E-value=7.1 Score=41.96 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCC-ceeecCCCCccHHHH
Q 036892 309 KDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGS-PVIRPADIETTALGA 387 (447)
Q Consensus 309 ~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~-pV~~~~~~e~~alGa 387 (447)
-.+-..|+. ++.. ++++++|.+.||.++=|-.. + ...+++|+ |=.-+...|+.|+||
T Consensus 338 ~p~~~aL~d-A~~~---~~di~EV~lvggmtrmpkv~-s-----------------~V~e~fgk~p~~~vnPdeava~GA 395 (640)
T KOG0102|consen 338 EPCKKALRD-ASLS---SSDINEVILVGGMTRMPKVQ-S-----------------TVKELFGKGPSKGVNPDEAVAGGA 395 (640)
T ss_pred hHHHHHHHh-ccCC---hhhhhhhhhhcchhhcHHHH-H-----------------HHHHHhCCCCCCCcCCcchhccch
Confidence 334445542 4433 35699999999999988887 8 89999985 445556789999999
Q ss_pred HHHHHHhcCCCCC
Q 036892 388 AFAAGLAIGVFKE 400 (447)
Q Consensus 388 AllA~~~~g~~~~ 400 (447)
|+.+++-.|..++
T Consensus 396 aiqggvl~geVkd 408 (640)
T KOG0102|consen 396 AIQGGVLSGEVKD 408 (640)
T ss_pred hhccchhhccccc
Confidence 9998877776544
No 101
>PRK13329 pantothenate kinase; Reviewed
Probab=64.33 E-value=1e+02 Score=30.07 Aligned_cols=70 Identities=11% Similarity=0.015 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhc
Q 036892 290 QGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADL 369 (447)
Q Consensus 290 ~g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Adv 369 (447)
.+|...|...++.|++..+...++.+++..+.+ -.|+++||.+ + +++..
T Consensus 176 ~~T~~ai~sG~~~g~~~~I~~~i~~~~~~~~~~-------~~vilTGGda-------~-----------------~l~~~ 224 (249)
T PRK13329 176 TNTSDALTSGGTQAIAGAVERMFRHLAQHCGAE-------PECLLTGGAA-------W-----------------KLAPS 224 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CEEEEECCCH-------H-----------------HHHhh
Confidence 458999999999999999999999998765443 3789999953 3 44455
Q ss_pred cCCceeecCCCCccHHHHHHHHH
Q 036892 370 LGSPVIRPADIETTALGAAFAAG 392 (447)
Q Consensus 370 l~~pV~~~~~~e~~alGaAllA~ 392 (447)
+..++.+. ++-+..|-..++.
T Consensus 225 l~~~~~~~--~~LvL~GL~~i~~ 245 (249)
T PRK13329 225 LTVPFELV--DNLVLDGLLVIAA 245 (249)
T ss_pred cCCCCEEC--CCcHHHHHHHHHh
Confidence 56666553 3567777766654
No 102
>PRK13321 pantothenate kinase; Reviewed
Probab=63.22 E-value=36 Score=33.15 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccc
Q 036892 290 QGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAI 338 (447)
Q Consensus 290 ~g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~ 338 (447)
.+|...|-..++.|.+..+...++.+++..+.+ -.++++||-
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~i~~~~~~~~~~-------~~vi~TGG~ 224 (256)
T PRK13321 183 KSTVSSIQSGLYYGYAGLVEGIVARIKAELGGP-------PRVIATGGF 224 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CEEEEECCc
Confidence 348999999999999999999999998876644 479999994
No 103
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=63.20 E-value=32 Score=33.40 Aligned_cols=118 Identities=18% Similarity=0.113 Sum_probs=67.9
Q ss_pred cchhHHhhhcCCC--CCCcEEEEecccceeccccCccccccCCCceeeeccccCCCCCCceeecccccchHHHHHHHHHH
Q 036892 193 LGDHHAAMLGQAC--KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDS 270 (447)
Q Consensus 193 ~gD~~aa~lg~g~--~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~ 270 (447)
+.|-.++++|+-. ...-+++.+||...+-++.. .|. |. |.+..=|. ...++=|.+.
T Consensus 100 G~DR~a~~~aA~~~~~~~~lViD~GTA~Tid~v~~-------~g~-----~~------GG~I~PG~----~l~~~aL~~~ 157 (243)
T TIGR00671 100 GIDRVANALAAIKFYGFNVVVVDAGTALTIDLVDQ-------EGK-----FL------GGAIAPGL----GISLHALKDR 157 (243)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEcCCceEEEEEcC-------CCe-----EE------EEEECccH----HHHHHHHHhh
Confidence 3699999999865 44558889999987754431 110 11 11221111 1112222221
Q ss_pred cCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecccccc
Q 036892 271 LGVISSASEIEELALQVHKQGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDAN 341 (447)
Q Consensus 271 ~~~~~~~~~l~~~a~~~~~~g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s 341 (447)
-...... +++ .....+..+|...|-..++.|.+..+...++.++++.+.+ -.++++||-++-
T Consensus 158 Ta~Lp~v-~~~-~~~~~~g~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~-------~~vi~TGG~a~~ 219 (243)
T TIGR00671 158 AAALPKF-EIA-RPDEVLGKSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRK-------FAVVITGGDGKY 219 (243)
T ss_pred HhcCCCC-CcC-CCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CEEEEECCchHh
Confidence 1110000 010 0011222348999999999999999999999998766544 479999997655
No 104
>PRK13318 pantothenate kinase; Reviewed
Probab=62.26 E-value=42 Score=32.64 Aligned_cols=43 Identities=5% Similarity=0.105 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecccc
Q 036892 290 QGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAID 339 (447)
Q Consensus 290 ~g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s 339 (447)
.+|...|...++.|.+..+...++.++++.+.+ -.++++||.+
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~-------~~vi~TGG~a 225 (258)
T PRK13318 183 KNTVEAMQSGIYYGYVGLVEGIVKRIKEELGKD-------PKVIATGGLA 225 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CEEEEECCch
Confidence 348999999999999999999999998766544 4689999964
No 105
>PRK00292 glk glucokinase; Provisional
Probab=61.34 E-value=28 Score=34.78 Aligned_cols=56 Identities=16% Similarity=0.010 Sum_probs=33.0
Q ss_pred cc-EEEEeccccc-c-HHHHH-hhhhhcccCccccccchhhhhhc-cCCceeecCCCCccHHHHHHHHH
Q 036892 329 KF-LLRVDGAIDA-N-LALLL-SFEKYYYFPFLSFSYFECRSADL-LGSPVIRPADIETTALGAAFAAG 392 (447)
Q Consensus 329 ~~-~i~~~GG~s~-s-~~~~~-q~~~~~~~~~~~~~~~~~~~Adv-l~~pV~~~~~~e~~alGaAllA~ 392 (447)
++ .|++.||.+. + +.+.. .|++++.-.. ...+. -..||......+++.+|||.++.
T Consensus 254 P~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~~~~agl~GAa~~~~ 314 (316)
T PRK00292 254 ARGGVYIAGGIVPRFLEFFKASGFRAAFEDKG--------RFSAYLADIPVYVITHPQPGLLGAGAYLR 314 (316)
T ss_pred CCceEEEeCchHHhHHhhhccHHHHHHHhcCC--------ChhhHHhcCCEEEEcCCChHHHHHHHHHh
Confidence 46 7888888874 2 44431 1233332211 12222 36787776677899999998764
No 106
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=58.16 E-value=1.9e+02 Score=29.66 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHh
Q 036892 296 IARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLS 347 (447)
Q Consensus 296 l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q 347 (447)
..+.+++-.++.+...+-.+....+.+ ++.|+++||.+.|+.++++
T Consensus 267 ~A~~a~d~~~~~la~~Ia~l~~~l~g~------pD~IV~gGGI~e~~~l~~~ 312 (351)
T TIGR02707 267 KAKLILDAMAYQIAKEIGKMAVVLKGK------VDAIVLTGGLAYSKYFVSE 312 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC------CCEEEEcchhhcCHHHHHH
Confidence 355667777777777776665444224 5899999999998777734
No 107
>PRK13328 pantothenate kinase; Reviewed
Probab=57.60 E-value=77 Score=30.98 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhc
Q 036892 290 QGSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADL 369 (447)
Q Consensus 290 ~g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Adv 369 (447)
..|...|...++.|.+-.+...++.+++..+.+ -.++++||.+ + +++..
T Consensus 183 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~-------~~vi~TGGda-------~-----------------~l~~~ 231 (255)
T PRK13328 183 DDTPDAISAGCLAAQAGLIERAWRDLAARWQAP-------VRLVLSGGAA-------D-----------------AVAPA 231 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CEEEEECCCH-------H-----------------HHHhh
Confidence 348999999999999999999999988766544 4789999953 3 34445
Q ss_pred cCCceeecCCCCccHHHHHHHHH
Q 036892 370 LGSPVIRPADIETTALGAAFAAG 392 (447)
Q Consensus 370 l~~pV~~~~~~e~~alGaAllA~ 392 (447)
+..+.... ++-+..|-+.++.
T Consensus 232 l~~~~~~~--p~LvL~GL~~i~~ 252 (255)
T PRK13328 232 LTVPHTRH--DNLVLLGLALIAA 252 (255)
T ss_pred CCCCCEEC--CCcHHHHHHHHHh
Confidence 55555553 3567788777664
No 108
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=56.80 E-value=29 Score=33.56 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=23.5
Q ss_pred hhhhccC---CceeecCCCCccHHHHHHHHHHhc
Q 036892 365 RSADLLG---SPVIRPADIETTALGAAFAAGLAI 395 (447)
Q Consensus 365 ~~Advl~---~pV~~~~~~e~~alGaAllA~~~~ 395 (447)
.+-++++ .+|......+++.+|||++|+++.
T Consensus 209 ~l~~L~~~~~~~v~~~~~~dgsg~GAAi~AA~a~ 242 (243)
T PF03727_consen 209 ALDELLPEEGCKVEFVLSEDGSGVGAAIAAAVAC 242 (243)
T ss_dssp HHHHHSTT-CEEEEEEE-SSTHHHHHHHHHHHHH
T ss_pred HHHHhcccccceEEEEEecCchHHHHHHHHHHhc
Confidence 4555554 478887888999999999999863
No 109
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=52.09 E-value=23 Score=35.33 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccE--EEEeccccccHHHHHhhhhhcccCccccccchhhhhhc
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFL--LRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADL 369 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~--i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Adv 369 (447)
+..++.+++++-+...+.+.++.+....+.+ ... +++.||+ .+++. . .+|+.
T Consensus 208 ~~~~~A~~i~~~~~~~m~~~i~~~~~~~g~~------~~~~~lv~~GG~--g~~~~-~-----------------~la~~ 261 (290)
T PF01968_consen 208 SVEEAAEGIVRIANENMADAIREVSVERGYD------PRDFPLVAFGGA--GPLHA-P-----------------ELAEE 261 (290)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------EEEE---------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------cccccccccccc--ccccc-c-----------------ccccc
Confidence 7888888888888888888887774333444 333 4444443 36777 7 89999
Q ss_pred cCCceeecCC--CCccHHHHHH
Q 036892 370 LGSPVIRPAD--IETTALGAAF 389 (447)
Q Consensus 370 l~~pV~~~~~--~e~~alGaAl 389 (447)
+|.+.++++. .-..|+|+++
T Consensus 262 lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 262 LGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 9998666553 3468888865
No 110
>PRK13331 pantothenate kinase; Reviewed
Probab=49.03 E-value=39 Score=33.10 Aligned_cols=41 Identities=12% Similarity=0.100 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecccc
Q 036892 291 GSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAID 339 (447)
Q Consensus 291 g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s 339 (447)
+|...|-..++.|.+..+..+++.++++.+ + -.++++||.+
T Consensus 174 nT~~ai~sGi~~g~~g~i~~~i~~~~~~~~-~-------~~vi~TGG~a 214 (251)
T PRK13331 174 NTQEAIQSGVIYTILAGLRDFIEDWLSLFP-D-------GKIVLTGGDG 214 (251)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C-------CEEEEECCCH
Confidence 489999999999999999999999987665 4 4699999954
No 111
>PTZ00107 hexokinase; Provisional
Probab=47.87 E-value=66 Score=34.39 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=34.7
Q ss_pred cEEEEecccc-ccHHHHHhhhhhcccCccccccchhhhhhcc---CCceeecCCCCccHHHHHHHHHHhc
Q 036892 330 FLLRVDGAID-ANLALLLSFEKYYYFPFLSFSYFECRSADLL---GSPVIRPADIETTALGAAFAAGLAI 395 (447)
Q Consensus 330 ~~i~~~GG~s-~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl---~~pV~~~~~~e~~alGaAllA~~~~ 395 (447)
-.|-+.|+.- +.|.+. + +.+..+.+++ +.+|......+++.+|||++|+.+.
T Consensus 406 ~~VgvDGSv~~~~p~f~-~-------------~~~~~l~~ll~~~~~~v~l~~a~DGSg~GAAl~AA~~~ 461 (464)
T PTZ00107 406 ATVAIDGSVYVKNPWFR-R-------------LLQEYINSILGPDAGNVVFYLADDGSGKGAAIIAAMVA 461 (464)
T ss_pred eEEEEeCcceecCccHH-H-------------HHHHHHHHHhCCCCCcEEEEEccCchHHHHHHHHHHhc
Confidence 4677778865 455555 3 1111344444 4568888888999999999999874
No 112
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=47.58 E-value=22 Score=37.89 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhhhcccccccCCcc-EEEEeccccc-cHHHHHhhhhhcccCccccccchhhhh
Q 036892 294 LHIARAVLESMCFQVKDV----LDSLQKDAVEKGVIKDAKF-LLRVDGAIDA-NLALLLSFEKYYYFPFLSFSYFECRSA 367 (447)
Q Consensus 294 ~~l~rAvlEgia~~~~~~----l~~l~~~~g~~~~~~~~~~-~i~~~GG~s~-s~~~~~q~~~~~~~~~~~~~~~~~~~A 367 (447)
..+++.+++.|+=...+. +..+-+..|... ... .|-+.|+.-+ .|.+. + |.+.-+.
T Consensus 377 r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~~----~~~~~VgvdGsly~~yP~f~-~-------------~m~~~l~ 438 (474)
T KOG1369|consen 377 RKLVREVCDVVSRRAARLAAAGIAAILNKTGELS----RKRVTVGVDGSLYKNHPFFR-E-------------YLKEALR 438 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccc----cCceEEEeccchhHcCchHH-H-------------HHHHHHH
Confidence 467777777775443222 112212233110 012 2444455444 36666 5 3444556
Q ss_pred hccC--CceeecCCCCccHHHHHHHHHHhcC
Q 036892 368 DLLG--SPVIRPADIETTALGAAFAAGLAIG 396 (447)
Q Consensus 368 dvl~--~pV~~~~~~e~~alGaAllA~~~~g 396 (447)
+++| ..|.+....+++.+|||++|+++..
T Consensus 439 eLlg~~~~v~i~~s~dgSg~GAAL~Aav~~~ 469 (474)
T KOG1369|consen 439 ELLGPSIHVKLVLSEDGSGRGAALIAAVASR 469 (474)
T ss_pred HHhCCCceEEEEECCCCccccHHHHHHHHhh
Confidence 6775 4677777888999999999998764
No 113
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=47.18 E-value=19 Score=34.73 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCCCCCCeeEEEEcCcccceEEE
Q 036892 3 VCMAKALDKATADGHNVDTGLKAIGLTNQRETTVLW 38 (447)
Q Consensus 3 ~~i~~~~~~~~~~~~~~~~~I~aI~vs~q~~~~v~v 38 (447)
+++++++++ .+.+..+ |.+|++|+|++++++.
T Consensus 39 ~~l~~~~~~---~~~~~~~-i~~i~~Tg~~~~~v~~ 70 (248)
T TIGR00241 39 RAILEALKE---AGIGLEP-IDKIVATGYGRHKVGF 70 (248)
T ss_pred HHHHHHHHH---cCCChhh-eeEEEEECCCcccccc
Confidence 344444433 3566778 9999999999999873
No 114
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=45.46 E-value=13 Score=41.41 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhh
Q 036892 293 QLHIARAVLESMCFQVKD-----VLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSA 367 (447)
Q Consensus 293 ~~~l~rAvlEgia~~~~~-----~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~A 367 (447)
+.-+.|-.+|-+|-.+-. +-+.+.+ .+.. .++|+.|++.||++|-|... . ++.
T Consensus 328 r~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~-a~l~---ldeIn~ViL~Gg~TRVP~VQ-e-----------------~l~ 385 (902)
T KOG0104|consen 328 RLKVTREEFEELCADLEERIVEPINDALKK-AQLS---LDEINQVILFGGATRVPKVQ-E-----------------TLI 385 (902)
T ss_pred ccceeHHHHHHHHHHHHHhhhhhHHHHHHh-cCCC---hhhhheeEEecCcccCchHH-H-----------------HHH
Confidence 334556666665544321 1233332 3333 45699999999999999987 7 666
Q ss_pred hccCCc-e-eecCCCCccHHHHHHHHHHhc
Q 036892 368 DLLGSP-V-IRPADIETTALGAAFAAGLAI 395 (447)
Q Consensus 368 dvl~~p-V-~~~~~~e~~alGaAllA~~~~ 395 (447)
+..+.. + .-....|++++||++-|+.-.
T Consensus 386 k~v~~~ei~knlNaDEA~vmGav~~aA~LS 415 (902)
T KOG0104|consen 386 KAVGKEELGKNLNADEAAVMGAVYQAAHLS 415 (902)
T ss_pred HHHhHHHHhcccChhHHHHHHHHHHHHhhc
Confidence 666543 2 123567999999999987643
No 115
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=43.48 E-value=80 Score=32.95 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHH
Q 036892 297 ARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345 (447)
Q Consensus 297 ~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~ 345 (447)
.+-++|.++|+++..+-.|-....-. ++.|+++||...|..+.
T Consensus 295 A~la~d~~~y~i~k~Ig~~~a~l~G~------vDaivfTGGige~~~~v 337 (388)
T PF00871_consen 295 AKLALDAFAYQIAKYIGAYAAVLEGG------VDAIVFTGGIGENSALV 337 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSS-------SEEEEEHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC------CCEEEEccccccchHHH
Confidence 44569999999999988876544223 79999999999865433
No 116
>PRK12408 glucokinase; Provisional
Probab=42.36 E-value=1e+02 Score=31.28 Aligned_cols=56 Identities=21% Similarity=-0.002 Sum_probs=32.6
Q ss_pred ccE-EEEecccccc--HHHHHh--hhhhcccCccccccchhhhhhccCCceeecCCCCccHHHHHHHHH
Q 036892 329 KFL-LRVDGAIDAN--LALLLS--FEKYYYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAAFAAG 392 (447)
Q Consensus 329 ~~~-i~~~GG~s~s--~~~~~q--~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaAllA~ 392 (447)
++. |++.||.+.+ +++..+ +++... .. ++..-.-..||......+++.+|||.++.
T Consensus 272 Pe~GIvIGGGIs~~~~~~l~~~~f~~~~~~-~~-------~~~~~~~~~~I~~~~~~~agl~GAa~~~~ 332 (336)
T PRK12408 272 ARGGVYLAGGILPQIADFLARSDFVERFLN-KG-------PMRPALEQVPVKLVEHGQLGVLGAASWYL 332 (336)
T ss_pred CCceEEEECchhHhHHhhhcCHHHHHHHhc-cC-------chhhHhcCCCEEEEeCCChHHHHHHHHHH
Confidence 467 9999998753 544411 111111 00 01112236788888877899999986653
No 117
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=42.36 E-value=3.7e+02 Score=27.06 Aligned_cols=68 Identities=21% Similarity=0.143 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecccccc-HHHHHhhhhhcccCccccccchhhhhhccCCceee
Q 036892 298 RAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDAN-LALLLSFEKYYYFPFLSFSYFECRSADLLGSPVIR 376 (447)
Q Consensus 298 rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s-~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~pV~~ 376 (447)
.-+++-.+..+...++.+....+ ..++.+.||...+ +.|..- +.--.++.|
T Consensus 226 ~~Il~~aa~~i~~~~~~l~~~~g--------~~~l~l~GG~~~~~~~~~~~-----------------~~~~l~~~~--- 277 (301)
T COG2971 226 IRILKEAAAYIATLLEALSIFNG--------SEKLSLLGGLAPSYPYYLSL-----------------FRRALLVPP--- 277 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--------CceEEEeccccccchhhHHH-----------------HHHHhcCCc---
Confidence 34555566777777777752222 4789999999887 777623 333333333
Q ss_pred cCCCCccHHHHHHHHHHhcC
Q 036892 377 PADIETTALGAAFAAGLAIG 396 (447)
Q Consensus 377 ~~~~e~~alGaAllA~~~~g 396 (447)
..-...||.++|....+
T Consensus 278 ---~~D~~~GA~~~A~~~~~ 294 (301)
T COG2971 278 ---IGDALSGAVLLALGRFG 294 (301)
T ss_pred ---cccHHHHHHHHHHHhhh
Confidence 22356788888865443
No 118
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.61 E-value=1.1e+02 Score=31.17 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhcc
Q 036892 291 GSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLL 370 (447)
Q Consensus 291 g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl 370 (447)
.-..+.++-+++.+.-++++.++-+....+... ++.|+++||++.=.-+- + .+.+-+
T Consensus 255 ~y~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~-----id~i~LaGggA~l~gL~-~-----------------~i~qrl 311 (354)
T COG4972 255 DYGSEVLRPFLGELTQEIRRSLQFYLSQSEMVD-----IDQILLAGGGASLEGLA-A-----------------AIQQRL 311 (354)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccce-----eeEEEEecCCcchhhHH-H-----------------HHHHHh
Confidence 356788999999999999999987764333221 89999999999877777 7 888888
Q ss_pred CCceeecC
Q 036892 371 GSPVIRPA 378 (447)
Q Consensus 371 ~~pV~~~~ 378 (447)
+.|+.+.+
T Consensus 312 ~~~t~van 319 (354)
T COG4972 312 SIPTEVAN 319 (354)
T ss_pred CCCeEeeC
Confidence 88888765
No 119
>PLN02405 hexokinase
Probab=36.54 E-value=1.4e+02 Score=32.35 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=34.7
Q ss_pred EEEEecccc-ccHHHHHhhhhhcccCccccccchhhhhhccC----CceeecCCCCccHHHHHHHHHHhc
Q 036892 331 LLRVDGAID-ANLALLLSFEKYYYFPFLSFSYFECRSADLLG----SPVIRPADIETTALGAAFAAGLAI 395 (447)
Q Consensus 331 ~i~~~GG~s-~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~----~pV~~~~~~e~~alGaAllA~~~~ 395 (447)
.|-+.|+.- +.|.+. + |.+..+-++++ .+|......+++.+|||++|+.+.
T Consensus 435 ~VavDGsvye~yp~f~-~-------------~~~~~l~ell~~~~~~~v~l~~a~DGSGvGAAl~AA~~~ 490 (497)
T PLN02405 435 VIAMDGGLFEHYTEFS-K-------------CMESTLKELLGEEVSESIEVEHSNDGSGIGAALLAASHS 490 (497)
T ss_pred EEEEeCchhhcCcCHH-H-------------HHHHHHHHHhCcccCceEEEEEecCchHHHHHHHHHHHh
Confidence 467778864 355555 3 22225555664 357777788899999999999875
No 120
>PLN02914 hexokinase
Probab=33.83 E-value=1.8e+02 Score=31.45 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=24.8
Q ss_pred CcEEeccchhHHhhhcCCC-CCC-cEEEEecccceec
Q 036892 187 IPISGCLGDHHAAMLGQAC-KKG-EVKSTYGTGAFIL 221 (447)
Q Consensus 187 ~pV~~g~gD~~aa~lg~g~-~~g-~~~~s~GTs~~i~ 221 (447)
+.|++=.-|+.+..++..- .++ .+.+++||+.-.+
T Consensus 222 v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNac 258 (490)
T PLN02914 222 MRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNAC 258 (490)
T ss_pred ceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeE
Confidence 5566666788888877655 553 5778999996654
No 121
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=32.90 E-value=68 Score=32.08 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=31.8
Q ss_pred EEEEecccccc--HHHHHh--hhhhcccCccccccchhhhhhccCCceeecCCCCccHHHHH
Q 036892 331 LLRVDGAIDAN--LALLLS--FEKYYYFPFLSFSYFECRSADLLGSPVIRPADIETTALGAA 388 (447)
Q Consensus 331 ~i~~~GG~s~s--~~~~~q--~~~~~~~~~~~~~~~~~~~Advl~~pV~~~~~~e~~alGaA 388 (447)
-+++.||++.+ +++. + |.++|+=.== +..-+-+.||.++.+.+.+.+|||
T Consensus 263 gv~v~GG~~~~~~~~~~-~~~f~~~~~~~~~-------~~~~~~~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 263 GVYIAGGIVPRFIEFFK-ASGFRAAFEDKGR-------MKEYVHDIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred cEEEECcHHHhHHhhhC-chHHHHHHhccCC-------hhHHHhhCCEEEEcCCCccccCCC
Confidence 68888888632 4433 2 2233211111 455567899999999999988875
No 122
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=30.75 E-value=4.8e+02 Score=25.48 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHh
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLS 347 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q 347 (447)
+++|+..++.|-+.--+..+-++.-..++ -+++.++||.--|..+. +
T Consensus 226 t~~DLCySLQEtvFamLVEiTERAMAh~~--------s~evLIVGGVGCN~RLQ-e 272 (336)
T KOG2708|consen 226 TKEDLCYSLQETVFAMLVEITERAMAHCG--------SKEVLIVGGVGCNERLQ-E 272 (336)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------CCcEEEEecccccHHHH-H
Confidence 88999999999886667777665433333 46888899988898876 7
No 123
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=30.31 E-value=2e+02 Score=31.75 Aligned_cols=115 Identities=14% Similarity=0.079 Sum_probs=63.9
Q ss_pred cchhHHhhhcCCC--CCCcEEEEecccceeccccCccccccCCCceeeeccccCCCCCCceeecccccchHHHHHHHHHH
Q 036892 193 LGDHHAAMLGQAC--KKGEVKSTYGTGAFILLNTGEEVVKSKHELLSTLAFKLGPKAPTNYALEGSVAIAGAAVQWLRDS 270 (447)
Q Consensus 193 ~gD~~aa~lg~g~--~~g~~~~s~GTs~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~G~~~~W~~~~ 270 (447)
+.|=.++++|+-. +..-+++.+||...+-++.. .|. |.-|-..||.- ..++=|.+.
T Consensus 433 G~DRw~a~vaA~~~~~~~~lVvD~GTA~TiD~v~~-------~g~-----~lGG~I~PG~~----------l~~~aL~~~ 490 (592)
T PRK13325 433 GSDRWFNALGSRRFSRNACVVVSCGTAVTVDALTD-------DGH-----YLGGTIMPGFH----------LMKESLAVR 490 (592)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEcCCceEEEEEcC-------CCc-----EeEEEECCcHH----------HHHHHHHhh
Confidence 3588999999876 34457789999877754431 111 11000123321 111111111
Q ss_pred cCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccCCccEEEEecccc
Q 036892 271 LGVISSASEIEELALQVHKQGSQLHIARAVLESMCFQVKDVLDSLQKDAVE-KGVIKDAKFLLRVDGAID 339 (447)
Q Consensus 271 ~~~~~~~~~l~~~a~~~~~~g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~-~~~~~~~~~~i~~~GG~s 339 (447)
-.... ...... ...+.+|..-|...++.|++-.+...++.+++..+. . .-.++++||.+
T Consensus 491 Ta~Lp-~~~~~~---~~~g~~T~~ai~sG~~~~~~g~v~~~~~~~~~~~~~~~------~~~vilTGGda 550 (592)
T PRK13325 491 TANLN-RHAGKR---YPFPTTTGNAVASGMMDAVCGSVMMMHGRLKEKTGAGK------PVDVIITGGGA 550 (592)
T ss_pred hhcCC-CCcccc---cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCEEEEECCCH
Confidence 11100 011111 222355889999999999988888888888765542 1 24689999964
No 124
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=28.11 E-value=1.9e+02 Score=28.38 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHh
Q 036892 294 LHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLS 347 (447)
Q Consensus 294 ~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q 347 (447)
.++.+++.+.++-.+...+....+. .. ...+.++||.+.|..++ +
T Consensus 195 ~~iA~s~q~~~~~~l~~~~~~a~~~--~~------~~~lv~~GGVaaN~~lr-~ 239 (268)
T PF00814_consen 195 ADIAASFQEAIADHLAKKAPRALEK--PR------AKSLVVSGGVAANKYLR-E 239 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HT------CSEEEEESGGGGHHHHH-H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh--hc------ccccchHHHHHHHHHHH-H
Confidence 5566666666655544444433222 22 67999999999999998 6
No 125
>PLN02666 5-oxoprolinase
Probab=28.07 E-value=1.9e+02 Score=35.01 Aligned_cols=75 Identities=16% Similarity=0.046 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHhhhhhcccCccccccchhhhhhccC
Q 036892 292 SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLG 371 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~ 371 (447)
+.++...+|++-..-.+.+.+..+...-|.+|+ -..+++.|| +. ++.. - .+|+.||
T Consensus 455 ~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr----~~~l~afGG-ag-p~ha-~-----------------~lA~~lg 510 (1275)
T PLN02666 455 SVEEVALGFVRVANEAMCRPIRQLTEMKGYETA----NHALACFGG-AG-PQHA-C-----------------AIARALG 510 (1275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CceEEEecC-cH-HHHH-H-----------------HHHHHcC
Confidence 888888888888888877777776555577731 233444444 33 3444 4 8899999
Q ss_pred Cc-eeecCCCC-ccHHHHHHH
Q 036892 372 SP-VIRPADIE-TTALGAAFA 390 (447)
Q Consensus 372 ~p-V~~~~~~e-~~alGaAll 390 (447)
.| |.++.... .+|+|+++.
T Consensus 511 i~~vivP~~~gv~sA~G~~~a 531 (1275)
T PLN02666 511 MSEVFVHRYCGILSAYGMGLA 531 (1275)
T ss_pred CCEEEeCCCccHHHHHHHHhh
Confidence 98 77876544 588888764
No 126
>PRK13326 pantothenate kinase; Reviewed
Probab=27.18 E-value=1.1e+02 Score=29.96 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecccc
Q 036892 291 GSQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAID 339 (447)
Q Consensus 291 g~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s 339 (447)
+|...|-..++.|.+..+..+++.++++.+.+ -.++++||.+
T Consensus 186 nT~~aI~sGi~~g~~~~I~g~i~~~~~e~~~~-------~~vv~TGG~a 227 (262)
T PRK13326 186 STSDSVNSGVIYQYKYLIEGVYHDLKRNYDRE-------FNLIITGGNS 227 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CEEEEECCCH
Confidence 38999999999999999999999998876644 4799999943
No 127
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=25.87 E-value=50 Score=30.15 Aligned_cols=28 Identities=7% Similarity=0.316 Sum_probs=16.6
Q ss_pred CcEEeCCCCHHHHHHHHHHHHHHHHHHh
Q 036892 413 STTFKPVLNEEFRKKKAESWCRAVERIF 440 (447)
Q Consensus 413 ~~~~~P~~~~~~~~~~y~~~~~~~~~~~ 440 (447)
.+.|.|+.+...-.=..++|.+.++++.
T Consensus 133 ~~~y~pnA~~Sf~n~~~~~~~~~l~~~~ 160 (162)
T TIGR00315 133 DKYYQPNADYSFPNLSKDEYLDYLRKLL 160 (162)
T ss_pred cCCCCCCCceeccccCHHHHHHHHHHHh
Confidence 4567888775431112556777777754
No 128
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=25.61 E-value=86 Score=31.93 Aligned_cols=70 Identities=19% Similarity=0.129 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccE-EEEeccccccHHHHHhhhhhcccCccccccchhhhhhccCCc
Q 036892 295 HIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFL-LRVDGAIDANLALLLSFEKYYYFPFLSFSYFECRSADLLGSP 373 (447)
Q Consensus 295 ~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~-i~~~GG~s~s~~~~~q~~~~~~~~~~~~~~~~~~~Advl~~p 373 (447)
+-++-.+++|.-.+|..|+..--+.. .|-+++ ++++||++.=.-+- + ++++-++.|
T Consensus 254 eal~~~v~~Iveair~~Le~tpPeL~-----~DI~ergivltGGGalLrglD-~-----------------~i~~et~~p 310 (342)
T COG1077 254 EALEEPLNGIVEAIRLVLEKTPPELA-----ADIVERGIVLTGGGALLRGLD-R-----------------LLSEETGVP 310 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhc-----ccHhhCceEEecchHHhcCch-H-----------------hHHhccCCe
Confidence 33444455555555555544211110 111355 99999998766666 7 889999999
Q ss_pred eeecCCCC-ccHHHH
Q 036892 374 VIRPADIE-TTALGA 387 (447)
Q Consensus 374 V~~~~~~e-~~alGa 387 (447)
|++.++.= ..|+|+
T Consensus 311 v~ia~~pL~~Va~G~ 325 (342)
T COG1077 311 VIIADDPLTCVAKGT 325 (342)
T ss_pred EEECCChHHHHHhcc
Confidence 99987643 344444
No 129
>PLN02596 hexokinase-like
Probab=25.08 E-value=3.5e+02 Score=29.23 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHhhhcccccccCCccEEEEecccc-ccHHHHHhhhhhcccCccccccchhhh
Q 036892 293 QLHIARAVLESMCFQVKDVLD-----SLQKDAVEKGVIKDAKFLLRVDGAID-ANLALLLSFEKYYYFPFLSFSYFECRS 366 (447)
Q Consensus 293 ~~~l~rAvlEgia~~~~~~l~-----~l~~~~g~~~~~~~~~~~i~~~GG~s-~s~~~~~q~~~~~~~~~~~~~~~~~~~ 366 (447)
...++|-|.+.|.-...++.. .+.+ .|.. ....-.|-+.|+.- +.|.+. + +.+..+
T Consensus 391 d~~~lr~i~~~V~~RAArL~Aa~iaail~k-~g~~---~~~~~~VavDGSvye~~p~f~-~-------------~l~~al 452 (490)
T PLN02596 391 AREVVAEVCDIVAERGARLAGAGIVGIIKK-LGRI---ENKKSVVTVEGGLYEHYRVFR-N-------------YLHSSV 452 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC---CCCceEEEEeCcceeeCcCHH-H-------------HHHHHH
Confidence 345677777777655444332 2222 2311 00023577778864 345554 3 122255
Q ss_pred hhccC----CceeecCCCCccHHHHHHHHHHhc
Q 036892 367 ADLLG----SPVIRPADIETTALGAAFAAGLAI 395 (447)
Q Consensus 367 Advl~----~pV~~~~~~e~~alGaAllA~~~~ 395 (447)
.+++| .+|.+....+++.+|||++|+...
T Consensus 453 ~ellg~~~~~~i~~~~s~DGSG~GAAl~AA~~~ 485 (490)
T PLN02596 453 WEMLGSELSDNVVIEHSHGGSGAGALFLAACQT 485 (490)
T ss_pred HHHhCcccCCcEEEEEccCchhHHHHHHHHhhc
Confidence 56665 367776677899999999998754
No 130
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=24.52 E-value=1.5e+02 Score=28.49 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=38.8
Q ss_pred cCCCCCHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccc-cccHHHHHh
Q 036892 271 LGVISSASEIEELALQVHKQG-SQLHIARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAI-DANLALLLS 347 (447)
Q Consensus 271 ~~~~~~~~~l~~~a~~~~~~g-~~~~l~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~-s~s~~~~~q 347 (447)
+|.+.+-+.+.+.|.+..|.= + ..|+|--.-.+.+++++.|++ .|.+ .+-++.+||. ..++++- |
T Consensus 138 LG~dvP~e~fve~a~e~k~d~v~----~SalMTttm~~~~~viE~L~e-eGiR------d~v~v~vGGApvtq~~a~-~ 204 (227)
T COG5012 138 LGRDVPVEEFVEKAKELKPDLVS----MSALMTTTMIGMKDVIELLKE-EGIR------DKVIVMVGGAPVTQDWAD-K 204 (227)
T ss_pred cCCCCCHHHHHHHHHHcCCcEEe----chHHHHHHHHHHHHHHHHHHH-cCCc------cCeEEeecCccccHHHHH-H
Confidence 344445566667776655421 1 234455555678999999987 5888 3444444665 4456666 8
No 131
>PRK12379 propionate/acetate kinase; Provisional
Probab=23.16 E-value=8.9e+02 Score=25.43 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHHHH
Q 036892 298 RAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALL 345 (447)
Q Consensus 298 rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~ 345 (447)
+=++|..+|+++..+-.|-...+ . ++-|+++||...|....
T Consensus 294 ~lA~d~f~yri~k~IGa~~a~L~-~------vDaIVFTGGIGen~~~v 334 (396)
T PRK12379 294 QLAIKTFVHRIARHIAGHAASLH-R------LDGIIFTGGIGENSSLI 334 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C------CCEEEECCccccCcHHH
Confidence 34788999999999888865556 4 89999999998875544
No 132
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=22.87 E-value=9.1e+02 Score=25.43 Aligned_cols=44 Identities=7% Similarity=0.035 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEecccc-ccHHHHHh
Q 036892 298 RAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAID-ANLALLLS 347 (447)
Q Consensus 298 rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s-~s~~~~~q 347 (447)
+-++|..+|+++..+-.|-...+-. ++-|+++||.. .++.++++
T Consensus 303 ~lA~~~f~yri~k~Iga~~a~L~G~------vDaiVFTGGIGEns~~vr~~ 347 (404)
T TIGR00016 303 QLAIKMYVHRIAKYIGSYIASLEGN------LDAIVFTGGIGENAATVREL 347 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC------CCEEEEcCccccCCHHHHHH
Confidence 3478999999999988876544534 78999999998 67777734
No 133
>PTZ00288 glucokinase 1; Provisional
Probab=21.80 E-value=2.8e+02 Score=29.13 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=22.4
Q ss_pred hhcc-CCceee-cCCCCccHHHHHHHHHHhc
Q 036892 367 ADLL-GSPVIR-PADIETTALGAAFAAGLAI 395 (447)
Q Consensus 367 Advl-~~pV~~-~~~~e~~alGaAllA~~~~ 395 (447)
.+.+ ..||.+ +.+.+.+.+|||..|...+
T Consensus 362 ~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~~ 392 (405)
T PTZ00288 362 LKFLSRTTFLRQKKSVNLNLLGCLQFGSQLS 392 (405)
T ss_pred HHHHhcCceEEEEeCCCccHHHHHHHHHHhh
Confidence 3444 489988 8888999999999887543
No 134
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=2.1e+02 Score=29.64 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHH----HHHHHHHHhhhcccccccCCccEEEEeccccccHHHHHh
Q 036892 292 SQLHIARAVLESMCFQV----KDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLALLLS 347 (447)
Q Consensus 292 ~~~~l~rAvlEgia~~~----~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~~~~q 347 (447)
+..++...+.+.++..+ ...++.+.. .... +..++++||.+.|.... .
T Consensus 272 ~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l-~~~~------~~~lV~SGGVAsN~yir-~ 323 (405)
T KOG2707|consen 272 EIADFAASLQRTVFRHISSKTHRAIKSLLL-QPKN------VKQLVISGGVASNQYIR-G 323 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cccC------CceEEEcCCccchHHHH-H
Confidence 67777776666666554 334444332 1223 57899999999998887 6
No 135
>PRK12440 acetate kinase; Reviewed
Probab=21.11 E-value=9.7e+02 Score=25.14 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCCccEEEEeccccccHH-HH
Q 036892 297 ARAVLESMCFQVKDVLDSLQKDAVEKGVIKDAKFLLRVDGAIDANLA-LL 345 (447)
Q Consensus 297 ~rAvlEgia~~~~~~l~~l~~~~g~~~~~~~~~~~i~~~GG~s~s~~-~~ 345 (447)
.+-+++..+|+++..+-.+....+ . ++-|+++||...|.. ++
T Consensus 296 A~lA~d~f~yri~k~Ig~~~a~l~-g------vDaiVFTgGIGen~~~vr 338 (397)
T PRK12440 296 ATLAFEVFTYRVAKYIASYLAALD-S------LDGIIFTGGIGENSLPIR 338 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-C------CCEEEECCccccCcHHHH
Confidence 344788999999999888865555 4 799999999988766 55
No 136
>PLN02362 hexokinase
Probab=20.81 E-value=4e+02 Score=28.94 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=24.8
Q ss_pred CcEEeccchhHHhhhcCCC-CCCc-EEEEecccceec
Q 036892 187 IPISGCLGDHHAAMLGQAC-KKGE-VKSTYGTGAFIL 221 (447)
Q Consensus 187 ~pV~~g~gD~~aa~lg~g~-~~g~-~~~s~GTs~~i~ 221 (447)
+.|++=.-|+...+++..- .++. +.+++||+.-.+
T Consensus 222 v~v~AlvNDTVgTL~a~aY~~~~~~iG~IlGTGtNac 258 (509)
T PLN02362 222 MRVAALVNDTVGTLALGHYHDPDTVAAVIIGTGTNAC 258 (509)
T ss_pred cEEEEEEEcCHHHHHhhhcCCCCceEEEEEECCccce
Confidence 5677777899888887444 5543 578999996543
Done!