BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036896
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 169/332 (50%), Gaps = 55/332 (16%)
Query: 1 LMPYPLQGHIKPMMSLAELLGSANFQVTF--------------------------FKSIP 34
++PYP+QGHI P+ LA+LL F +TF F+SIP
Sbjct: 13 MIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIP 72
Query: 35 SGLPANVIRSGLTAKDVFDAMKAVSK---PAFRDLLISL-------------ADGILCFL 78
GL + G ++DV ++V K + +LL L +D + F
Sbjct: 73 DGLTP-MEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSF- 130
Query: 79 TLDVSEELQIPLLVLRTHNASYSWIYFHLPKLIEDGLIPFPDEN------MDKPIAGIPG 132
T+ +EE ++P ++ + +A H +E G+IPF DE+ ++ + IPG
Sbjct: 131 TIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIPG 190
Query: 133 FENFLRNRDLPGTCRVKTSDNDYLLQFFIEETFAMTRASALVLNTF-EIEAPIVSLLGFH 191
+NF R +D+ R T+ ND +L+FFIE + + + ++LNTF E+E+ +++ L
Sbjct: 191 LKNF-RLKDIVDFIRT-TNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSST 248
Query: 192 FTKIYAIGPLHKLQKSRMKDINSPSVSSSGILQKEDTSCMTWLNSQPPKSVLYVSFGSLV 251
IY IGPL L K + S+ S+ L KEDT C+ WL S+ P SV+YV+FGS
Sbjct: 249 IPSIYPIGPLPSLLKQTPQIHQLDSLDSN--LWKEDTECLDWLESKEPGSVVYVNFGSTT 306
Query: 252 GLTREQMSELWHGLVNNGQSFLLVVRPDLILG 283
+T EQ+ E GL N +SFL ++RPDL++G
Sbjct: 307 VMTPEQLLEFAWGLANCKKSFLWIIRPDLVIG 338
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 132/323 (40%), Gaps = 74/323 (22%)
Query: 1 LMPYPLQGHIKPMMSLAE-LLGSANFQVTFF-----------KSIPSGLPANVIRSGLTA 48
++P P GH+ P++ A+ L+ VTF +++ LP+++ L
Sbjct: 11 IIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPP 70
Query: 49 KDVFDAMKAV------------SKPAFRDLLISLADG--------ILCFLT--LDVSEEL 86
D+ D + S P R + S +G + F T DV+ E
Sbjct: 71 VDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEF 130
Query: 87 QIPLLVLRTHNASYSWIYFHLPKLIEDGLIPFPDENMDKPIAGIPGFENFLRNRDLPGTC 146
+P + A+ + HLPKL E F + +P+ LPG
Sbjct: 131 HVPPYIFYPTTANVLSFFLHLPKLDETVSCEF--RELTEPLM-------------LPGCV 175
Query: 147 RVKTSD--------NDYLLQFFIEETFAMTRASALVLNTF-EIEAPIVSLL---GFHFTK 194
V D D ++ + T A +++NTF E+E + L G
Sbjct: 176 PVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPP 235
Query: 195 IYAIGPLHKLQKSRMKDINSPSVSSSGILQKEDTSCMTWLNSQPPKSVLYVSFGSLVGLT 254
+Y +GPL + K K Q E++ C+ WL++QP SVLYVSFGS LT
Sbjct: 236 VYPVGPLVNIGKQEAK-------------QTEESECLKWLDNQPLGSVLYVSFGSGGTLT 282
Query: 255 REQMSELWHGLVNNGQSFLLVVR 277
EQ++EL GL ++ Q FL V+R
Sbjct: 283 CEQLNELALGLADSEQRFLWVIR 305
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 55 MKAVSKPAFRDLLISLADGILCFLTLDVSEELQIPLLVLRTHNASYSWIYFHLP-KLIED 113
+KA K + ++ L C +DV E IP + T N + + L + IE+
Sbjct: 103 VKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEE 162
Query: 114 GLIPFPDENMDKPIAGIPGFENFLRNRDLPGTCRVKTSDNDYLLQFFIEETFAMTRASAL 173
F D + D + IPG N + + LP C K D Y+ + + E F T+ +
Sbjct: 163 ---VFDDSDRDHQLLNIPGISNQVPSNVLPDACFNK--DGGYIAYYKLAERFRDTKG--I 215
Query: 174 VLNTF-EIEAPIVSLLGFHFTKI---YAIGPLHKLQKSRMKDINSPSVSSSGILQKEDTS 229
++NTF ++E + L H KI YA+GPL L+ ++ Q +
Sbjct: 216 IVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLD----------QAQHDL 265
Query: 230 CMTWLNSQPPKSVLYVSFGSL-VGLTREQMSELWHGLVNNGQSFL 273
+ WL+ QP KSV+++ FGS+ V Q+ E+ GL ++G FL
Sbjct: 266 ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFL 310
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 317 DTCDGSIIEKLVRDLMENMREEIMGSTDRVAMMARDAVNEGGSSSRNLDRLIENV 371
D IEK ++DLM+ + + M+R+AV +GGSS ++ +LI+++
Sbjct: 408 DVVAAEEIEKGLKDLMDK-DSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 55 MKAVSKPAFRDLLISLADGILCFLTLDVSEELQIPLLVLRTHNASYSWIYFHLP-KLIED 113
+KA K + ++ L C +DV E IP + T N + + L + IE+
Sbjct: 103 VKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEE 162
Query: 114 GLIPFPDENMDKPIAGIPGFENFLRNRDLPGTCRVKTSDNDYLLQFFIEETFAMTRASAL 173
F D + D + IPG N + + LP C K D Y+ + + E F T+ +
Sbjct: 163 ---VFDDSDRDHQLLNIPGISNQVPSNVLPDACFNK--DGGYIAYYKLAERFRDTKG--I 215
Query: 174 VLNTF-EIEAPIVSLLGFHFTKI---YAIGPLHKLQKSRMKDINSPSVSSSGILQKEDTS 229
++NTF ++E + L H KI YA+GPL L+ ++ Q +
Sbjct: 216 IVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLD----------QAQHDL 265
Query: 230 CMTWLNSQPPKSVLYVSFGSL-VGLTREQMSELWHGLVNNGQSFL 273
+ WL+ QP KSV+++ FGS+ V Q+ E+ GL ++G FL
Sbjct: 266 ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFL 310
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 317 DTCDGSIIEKLVRDLMENMREEIMGSTDRVAMMARDAVNEGGSSSRNLDRLIENV 371
D IEK ++DLM+ + + M+R+AV +GGSS ++ +LI+++
Sbjct: 408 DVVAAEEIEKGLKDLMDK-DSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 109/262 (41%), Gaps = 32/262 (12%)
Query: 30 FKSIPSGLPANVIRSGLTAKDVFDAMKAVS---KPAFRDLLISLADGILCFLT------- 79
+ ++ GLP + SG + +F +KA+ K + + I C +T
Sbjct: 71 YYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFG 130
Query: 80 LDVSEELQIPLLVLRTHNASYSWIYFHLPKLIEDGLIPFPDENMD-KPIAGIPGFENFLR 138
D++EE+ + L T +S + LI + E D K I +PGF L+
Sbjct: 131 ADLAEEMHAKWVPLWT-AGPHSLLTHVYTDLIREKT--GSKEVHDVKSIDVLPGFPE-LK 186
Query: 139 NRDLPGTCRVKTSDNDYLLQFFIEETFAMTRASALVLNTFEIEAPIV-SLLGFHFTKIYA 197
DLP +K D + + + RA+A+ +N+F P++ + L F +
Sbjct: 187 ASDLPEGV-IKDIDVPFATMLH-KMGLELPRANAVAINSFATIHPLIENELNSKFKLLLN 244
Query: 198 IGPLHKLQKSRMKDINSPSVSSSGILQKEDTSCMTWLNSQPPKSVLYVSFGSLVGLTREQ 257
+GP ++ +P S ++ C+ WL+ SV+Y+SFGS+V +
Sbjct: 245 VGPF---------NLTTPQRKVS-----DEHGCLEWLDQHENSSVVYISFGSVVTPPPHE 290
Query: 258 MSELWHGLVNNGQSFLLVVRPD 279
++ L L G F+ R D
Sbjct: 291 LTALAESLEECGFPFIWSFRGD 312
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 26/135 (19%)
Query: 127 IAGIPGFENFLRNRDLPGTCRVKTSD----------NDYLLQFFIEETFAMTRASALVLN 176
++GI G E+ L N +PG +V+ D N + + +A+A+ +N
Sbjct: 162 VSGIQGREDELLNF-IPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFIN 220
Query: 177 TFE-IEAPIVSLLGFHFTKIYAIGPLHKLQKSRMKDINSPSVSSSGILQKEDTSCMTWLN 235
+FE ++ + + L IGP + I P V + T C+ WL
Sbjct: 221 SFEELDDSLTNDLKSKLKTYLNIGPFNL--------ITPPPVVPN------TTGCLQWLK 266
Query: 236 SQPPKSVLYVSFGSL 250
+ P SV+Y+SFG++
Sbjct: 267 ERKPTSVVYISFGTV 281
>pdb|3IWG|A Chain A, Acetyltransferase From Gnat Family From Colwellia
Psychrerythraea.
pdb|3IWG|B Chain B, Acetyltransferase From Gnat Family From Colwellia
Psychrerythraea
Length = 276
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 136 FLRNRDLPGTCRVKTSDNDYLLQFFIEETFAMTRASALVLNT-------FEIEAPIVSLL 188
F N++L G C V +D+ YLLQ++++ F + L + E++ VS
Sbjct: 48 FYVNKNLVGFCCV--NDDGYLLQYYLQPEFQLCSQELFTLISQQNSSVIGEVKGAFVSTA 105
Query: 189 GFHFTKI-------YAIGPLHKLQKSRMKDINSPSVSSSGILQKEDTSCMTW--LNSQPP 239
++ + + + L +++ D N + ++ T+ +T+ N P
Sbjct: 106 ELNYQALCLDNSATFKVNSLXYQHNTKLADRNLEXIDXQIAGTEQLTAFVTFAAANIGAP 165
Query: 240 KSVLYVSFGSLVGLTREQMSELWH 263
+ L +G+L+ R+++ WH
Sbjct: 166 EQWLTQYYGNLI--ERKELFGYWH 187
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOP|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOR|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
pdb|1WOS|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage
System
Length = 364
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 28 TFFKSIPSGLPANVIRSGLTAKDVFDAM-KAVSKPAFRDLLISL 70
+F KSI +G+ V R+G T +D F+ M +A + P D L++L
Sbjct: 170 SFRKSIVAGVETLVSRTGYTGEDGFELMLEAKNAPKVWDALMNL 213
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 305 VSEVSKIGFD--MKDTCDGSIIEKLVRDLMENMREEIMGSTDRVAMMARDAVNEGGSSSR 362
V ++ K+ D M DG I +R+++ + ++ + + D++ ++ +++GG S
Sbjct: 360 VDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEE 419
Query: 363 NLDRLIENVRLMARK 377
NL +L+++ + A +
Sbjct: 420 NLAKLVQHAHIPAEE 434
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 161 IEETFAMTRASALVLNTFEIEAPIVSLLGFH-------------FTKIYAIGPLHKLQKS 207
I + RAS L+LN E P+ ++ FH + KI A+ +H+L KS
Sbjct: 99 IRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKS 158
Query: 208 RM 209
++
Sbjct: 159 KL 160
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 161 IEETFAMTRASALVLNTFEIEAPIVSLLGFH-------------FTKIYAIGPLHKLQKS 207
I + RAS L+LN E P+ ++ FH + KI A+ +H+L KS
Sbjct: 100 IRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKS 159
Query: 208 RM 209
++
Sbjct: 160 KL 161
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 13/62 (20%)
Query: 161 IEETFAMTRASALVLNTFEIEAPIVSLLGFH-------------FTKIYAIGPLHKLQKS 207
I + RAS L+LN E P+ ++ FH + KI A+ +H+L KS
Sbjct: 99 IRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLNKS 158
Query: 208 RM 209
++
Sbjct: 159 KL 160
>pdb|1L4A|D Chain D, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 87
Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 330 DLMENMREEIMGSTDRVAMMARDAVNEGGSSSRNLDRL 367
D MEN +E+ + MA D NE GS +R +DR+
Sbjct: 26 DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRI 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,884,957
Number of Sequences: 62578
Number of extensions: 443472
Number of successful extensions: 1026
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1005
Number of HSP's gapped (non-prelim): 22
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)