BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036898
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 85/160 (53%), Gaps = 22/160 (13%)
Query: 1 FCPLDWELLVCYLKKKVKNEPLPPNRIMEIKLYNFTPEQLKQELKVKYKDLREKEMFFFT 60
F P D EL+V YL +K I EI LY F P L + EKE +FF+
Sbjct: 23 FYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL-----FGEKEWYFFS 77
Query: 61 PRERKHQNGTRLNRVTGSGPDSGSGYWKSTGADKSIKFKGALVGFKKQLVYYRKNPEAGG 120
PR+RK+ NG+R NRV +GSGYWK+TG DK I +G VG KK LV+Y G
Sbjct: 78 PRDRKYPNGSRPNRV------AGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG- 130
Query: 121 EGEKNDWIKTDWIMHEFRVPNNPTPRKKDGTNMELDWALC 160
KT+WIMHE+R+ P +++G+ DW LC
Sbjct: 131 -------TKTNWIMHEYRLIE---PSRRNGSTKLDDWVLC 160
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 85/160 (53%), Gaps = 22/160 (13%)
Query: 1 FCPLDWELLVCYLKKKVKNEPLPPNRIMEIKLYNFTPEQLKQELKVKYKDLREKEMFFFT 60
F P D EL+V YL +K I EI LY F P L + EKE +FF+
Sbjct: 26 FYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKAL-----FGEKEWYFFS 80
Query: 61 PRERKHQNGTRLNRVTGSGPDSGSGYWKSTGADKSIKFKGALVGFKKQLVYYRKNPEAGG 120
PR+RK+ NG+R NRV +GSGYWK+TG DK I +G VG KK LV+Y G
Sbjct: 81 PRDRKYPNGSRPNRV------AGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG- 133
Query: 121 EGEKNDWIKTDWIMHEFRVPNNPTPRKKDGTNMELDWALC 160
KT+WIMHE+R+ P +++G+ DW LC
Sbjct: 134 -------TKTNWIMHEYRLIE---PSRRNGSTKLDDWVLC 163
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 84/162 (51%), Gaps = 21/162 (12%)
Query: 1 FCPLDWELLVCYLKKKVKNEPLPPNRIMEIKLYNFTPEQLKQELKVKYKDLREKEMFFFT 60
F P D EL+ YL +K + LP I E+ LY F P L + +E +FFT
Sbjct: 21 FHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG-----AREWYFFT 75
Query: 61 PRERKHQNGTRLNRVTGSGPDSGSGYWKSTGADKSIKFKGALVGFKKQLVYYRKNPEAGG 120
PR+RK+ NG+R NR +G+GYWK+TGADK + +G +G KK LV+Y G
Sbjct: 76 PRDRKYPNGSRPNRA------AGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG- 128
Query: 121 EGEKNDWIKTDWIMHEFRV-PNNPTPRKKDGTNMEL-DWALC 160
+KTDWIMHE+R+ ++ L DW LC
Sbjct: 129 -------VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLC 163
>pdb|2CKF|A Chain A, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|C Chain C, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
pdb|2CKF|E Chain E, Crystal Structure Of The Terminal Component Of The Pah-
Hydroxylating Dioxygenase From Sphingomonas Sp Chy-1
Length = 454
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 17/123 (13%)
Query: 227 TFHNSTSLEIPHQMDSTNHGVVN-CTQYGXXXXXXXXXXXXXXXXYPNPGQNIKDFSCNY 285
T+ + + HQ D T +N CT G + + G N K F CNY
Sbjct: 56 TYMAEDKIILSHQSDGTFRAFINSCTHRGNQIC------------HADSG-NAKAFVCNY 102
Query: 286 SGVANSIQYANTSQNDINASSIAFESMPTQAQVFADNVNLPEWSSLITAVVDPEIQKLDS 345
G + + S D+ S + + + ++ A +V + + I DPE L+
Sbjct: 103 HGW---VYGQDGSLVDVPLESRCYHNKLDKQELAAKSVRVETYKGFIFGCHDPEAPSLED 159
Query: 346 YFG 348
Y G
Sbjct: 160 YLG 162
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
pdb|3TZ2|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX
pdb|3TZ4|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
With Adp
pdb|3TZ5|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX WITH ADP
Length = 418
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 72 LNRVTGSGPDSGSGYWKSTGADKSIKFK 99
L V GSGP SGS W G+ S++ +
Sbjct: 3 LTSVLGSGPRSGSSLWPLLGSSLSLRVR 30
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain
Alpha-ketoacid Dehydrogenase Kinase In Complex With
3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid
Length = 418
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 72 LNRVTGSGPDSGSGYWKSTGADKSIKFK 99
L V GSGP SGS W G+ S++ +
Sbjct: 3 LTSVLGSGPRSGSSLWPLLGSSLSLRVR 30
>pdb|2GBW|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBX|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
Length = 454
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 277 NIKDFSCNYSGVANSIQYANTSQNDINASSIAFESMPTQAQVFADNVNLPEWSSLITAVV 336
N K F CNY G + S D+ S + + + ++ A +V + + I
Sbjct: 94 NAKAFVCNYHGWVFG---QDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCH 150
Query: 337 DPEIQKLDSYFG 348
DPE L+ Y G
Sbjct: 151 DPEAPSLEDYLG 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,093,383
Number of Sequences: 62578
Number of extensions: 475362
Number of successful extensions: 624
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 7
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)