Query 036898
Match_columns 396
No_of_seqs 152 out of 947
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 10:36:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.4E-48 1.2E-52 353.6 14.4 149 1-168 21-171 (174)
2 1ut7_A No apical meristem prot 100.0 5.7E-48 2E-52 351.2 13.9 146 1-168 23-168 (171)
3 2oh5_A Polyhedrin, C-polyhedri 8.8 2E+02 0.007 26.0 2.9 27 85-111 141-168 (248)
4 1cmb_A Met APO-repressor; DNA- 6.9 3.3E+02 0.011 22.2 3.1 38 2-43 50-87 (104)
5 2jv2_A Putative uncharacterize 6.6 2.1E+02 0.0072 22.5 1.8 28 6-34 27-54 (83)
6 2c4b_A Barnase mcoeeti fusion; 6.2 2.9E+02 0.01 24.2 2.6 37 4-43 4-44 (143)
7 3uf7_A UDG, uracil-DNA glycosy 3.9 2.7E+02 0.0092 26.2 0.9 20 265-284 60-80 (237)
8 1jmx_G Amine dehydrogenase; ox 3.8 2.8E+02 0.0096 21.9 0.7 8 366-373 38-45 (79)
9 1pby_C Quinohemoprotein amine 3.7 2.8E+02 0.0096 21.8 0.7 8 366-373 38-45 (79)
10 3nr5_A MAF1, repressor of RNA 3.3 1.9E+02 0.0066 25.7 -0.8 13 27-39 119-131 (164)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.4e-48 Score=353.61 Aligned_cols=149 Identities=44% Similarity=0.809 Sum_probs=125.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCceeecCCCCCCchhhhHhhhhhhhcCCCceEEEeccccccCCCCCccceeccCCC
Q 036898 1 FCPLDWELLVCYLKKKVKNEPLPPNRIMEIKLYNFTPEQLKQELKVKYKDLREKEMFFFTPRERKHQNGTRLNRVTGSGP 80 (396)
Q Consensus 1 F~PTDEELV~~YL~~Ki~G~plp~~~I~evDVY~~ePweLp~~~~~~~~~~~e~eWYFFspr~rK~~nG~R~nRttG~g~ 80 (396)
|+|||||||.|||++|+.|.+++.++|+++|||++|||+||+. ...++++||||+++++||++|.|++|++
T Consensus 21 F~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~-----~~~g~~ewYFFs~r~~ky~~g~R~nR~t---- 91 (174)
T 3ulx_A 21 FHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPER-----ALFGAREWYFFTPRDRKYPNGSRPNRAA---- 91 (174)
T ss_dssp CCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGG-----CSSCSSEEEEEEECCC-----CCSCEEE----
T ss_pred eCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhh-----hccCCceEEEEeccccccCCCCCceeec----
Confidence 9999999999999999999999999999999999999999987 4457889999999999999999999999
Q ss_pred CCCCceEeecCCCceEeeCCeeEEEEEEeeeecCCCCCCCCCCCCCccccCeeEEeeecCCCCCCCC--CCCCCCccceE
Q 036898 81 DSGSGYWKSTGADKSIKFKGALVGFKKQLVYYRKNPEAGGEGEKNDWIKTDWIMHEFRVPNNPTPRK--KDGTNMELDWA 158 (396)
Q Consensus 81 ~~ggG~WK~tG~~k~I~~~G~vVG~KKtLvFy~gr~p~G~~G~~~~~~KT~WvMhEYrL~~~~~~~~--~~~~~~~~d~V 158 (396)
++||||++|+++.|...|.+||+||+|+||.|++|+| .||+|+||||+|........ ..+.....+||
T Consensus 92 --~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g--------~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wV 161 (174)
T 3ulx_A 92 --GNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG--------VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWV 161 (174)
T ss_dssp --TTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSC--------EEEEEEEEEEEECSCC-----------CCSSEE
T ss_pred --CCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCC--------CcCCeEEEEEEeCCCCCcccccccCCCCCCCEE
Confidence 8999999999999998899999999999999999999 99999999999998754321 11111234999
Q ss_pred EEEEEEcCCC
Q 036898 159 LCKIYKKVYK 168 (396)
Q Consensus 159 LCRIykK~~~ 168 (396)
|||||+|+..
T Consensus 162 lCrvf~K~~~ 171 (174)
T 3ulx_A 162 LCRLYNKKNE 171 (174)
T ss_dssp EEEEEESCC-
T ss_pred EEEEEEcCCC
Confidence 9999998753
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=5.7e-48 Score=351.16 Aligned_cols=146 Identities=47% Similarity=0.810 Sum_probs=122.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCceeecCCCCCCchhhhHhhhhhhhcCCCceEEEeccccccCCCCCccceeccCCC
Q 036898 1 FCPLDWELLVCYLKKKVKNEPLPPNRIMEIKLYNFTPEQLKQELKVKYKDLREKEMFFFTPRERKHQNGTRLNRVTGSGP 80 (396)
Q Consensus 1 F~PTDEELV~~YL~~Ki~G~plp~~~I~evDVY~~ePweLp~~~~~~~~~~~e~eWYFFspr~rK~~nG~R~nRttG~g~ 80 (396)
|+|||||||.|||++|+.|.+++.++|+++|||++|||+||+. ...++++||||+++++||++|.|++|+|
T Consensus 23 F~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~-----~~~g~~ewyFFs~r~~k~~~g~R~~R~t---- 93 (171)
T 1ut7_A 23 FYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK-----ALFGEKEWYFFSPRDRKYPNGSRPNRVA---- 93 (171)
T ss_dssp ECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHH-----SSSCSSEEEEEEECCC-------CCEEE----
T ss_pred eCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhch-----hhcCCccEEEEeccccccCCCCcccccC----
Confidence 8999999999999999999999999999999999999999998 4567899999999999999999999999
Q ss_pred CCCCceEeecCCCceEeeCCeeEEEEEEeeeecCCCCCCCCCCCCCccccCeeEEeeecCCCCCCCCCCCCCCccceEEE
Q 036898 81 DSGSGYWKSTGADKSIKFKGALVGFKKQLVYYRKNPEAGGEGEKNDWIKTDWIMHEFRVPNNPTPRKKDGTNMELDWALC 160 (396)
Q Consensus 81 ~~ggG~WK~tG~~k~I~~~G~vVG~KKtLvFy~gr~p~G~~G~~~~~~KT~WvMhEYrL~~~~~~~~~~~~~~~~d~VLC 160 (396)
++||||++|+++.|...|.+||+||+|+||.+++++| .||+|+||||+|...... .+.....+||||
T Consensus 94 --~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g--------~kT~WvMhEY~l~~~~~~---~~~~~~~~~VlC 160 (171)
T 1ut7_A 94 --GSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG--------TKTNWIMHEYRLIEPSRR---NGSTKLDDWVLC 160 (171)
T ss_dssp --TTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSC--------EEEEEEEEEEEECCCC-----------CCEEEE
T ss_pred --CCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCC--------CcCCeEEEEEEcCCCccc---cCcccCCCEEEE
Confidence 8999999999999999899999999999999999999 999999999999987521 111234599999
Q ss_pred EEEEcCCC
Q 036898 161 KIYKKVYK 168 (396)
Q Consensus 161 RIykK~~~ 168 (396)
|||+|...
T Consensus 161 rv~~k~~~ 168 (171)
T 1ut7_A 161 RIYKKQSS 168 (171)
T ss_dssp EEEECC--
T ss_pred EEEEcCCC
Confidence 99999765
No 3
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=8.83 E-value=2e+02 Score=26.03 Aligned_cols=27 Identities=30% Similarity=0.603 Sum_probs=22.3
Q ss_pred ceEeecC-CCceEeeCCeeEEEEEEeee
Q 036898 85 GYWKSTG-ADKSIKFKGALVGFKKQLVY 111 (396)
Q Consensus 85 G~WK~tG-~~k~I~~~G~vVG~KKtLvF 111 (396)
--|.++| +-+.|...|++||+...|..
T Consensus 141 hpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 141 HPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred CCccccCceEEEeeecceEeeeeeeeec
Confidence 4599998 66788888999999988865
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=6.94 E-value=3.3e+02 Score=22.22 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=30.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCceeecCCCCCCchhhhHh
Q 036898 2 CPLDWELLVCYLKKKVKNEPLPPNRIMEIKLYNFTPEQLKQE 43 (396)
Q Consensus 2 ~PTDEELV~~YL~~Ki~G~plp~~~I~evDVY~~ePweLp~~ 43 (396)
|-|..||++.-...-..|+|||. +.|+-+..|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHH
Confidence 45778888877777889999985 358888888888876
No 5
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=6.57 E-value=2.1e+02 Score=22.47 Aligned_cols=28 Identities=11% Similarity=0.282 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCceeecCCCC
Q 036898 6 WELLVCYLKKKVKNEPLPPNRIMEIKLYN 34 (396)
Q Consensus 6 EELV~~YL~~Ki~G~plp~~~I~evDVY~ 34 (396)
.++ ..||++++.|+|+-..-+..+++++
T Consensus 27 ~~~-~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 27 PDF-VDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp HHH-HHHHHHHHTTSEECTTCEEEEEETT
T ss_pred ccH-HHHHHHHHCCCCccCCCEEEEeeCC
Confidence 444 4899999999998654444466644
No 6
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=6.25 E-value=2.9e+02 Score=24.16 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCcee--ecCCCCCCch--hhhHh
Q 036898 4 LDWELLVCYLKKKVKNEPLPPNRIM--EIKLYNFTPE--QLKQE 43 (396)
Q Consensus 4 TDEELV~~YL~~Ki~G~plp~~~I~--evDVY~~ePw--eLp~~ 43 (396)
|..+-|..||.. ...||..+|. +++--+.+|- .|...
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v 44 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADV 44 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHH
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhc
Confidence 455666688876 3467777774 4666778885 46655
No 7
>3uf7_A UDG, uracil-DNA glycosylase; glycosylase, SSB C-terminal, base excision repair, hydrolase; HET: SO4; 1.20A {Escherichia coli} PDB: 1uug_A 1lqj_A 1lqm_A 1lqg_A 2uug_A 1eui_A 1eug_A 4eug_A 5eug_A 3eug_A 2eug_A 1flz_A 2jhq_A
Probab=3.93 E-value=2.7e+02 Score=26.21 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCC-Ccccceee
Q 036898 265 FASPNPYPNPGQ-NIKDFSCN 284 (396)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~~ 284 (396)
+++-||||.+|+ +-+.|+++
T Consensus 60 IlGQDPYh~~gqA~GLaFSV~ 80 (237)
T 3uf7_A 60 ILGQDPYHGPGQAHGLAFSVR 80 (237)
T ss_dssp EEESSCCCSTTTCCSSSSCCC
T ss_pred EEecCCCCCCCcccceeeecC
Confidence 478899999998 33555554
No 8
>1jmx_G Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.137.9.1 PDB: 1jmz_G*
Probab=3.75 E-value=2.8e+02 Score=21.85 Aligned_cols=8 Identities=50% Similarity=1.327 Sum_probs=6.4
Q ss_pred CCCCcccc
Q 036898 366 NDPLWWPT 373 (396)
Q Consensus 366 ~~~~~~~~ 373 (396)
.||-|||.
T Consensus 38 ~dpCwWPa 45 (79)
T 1jmx_G 38 SDPCWXPA 45 (79)
T ss_dssp HTTTSSTT
T ss_pred cccccCcc
Confidence 38999995
No 9
>1pby_C Quinohemoprotein amine dehydrogenase 9 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.137.9.1 PDB: 1jju_C*
Probab=3.75 E-value=2.8e+02 Score=21.85 Aligned_cols=8 Identities=50% Similarity=1.277 Sum_probs=6.4
Q ss_pred CCCCcccc
Q 036898 366 NDPLWWPT 373 (396)
Q Consensus 366 ~~~~~~~~ 373 (396)
.||-|||.
T Consensus 38 ~dpCwWPa 45 (79)
T 1pby_C 38 ADPCWXPA 45 (79)
T ss_dssp HTTTSSTT
T ss_pred cccccCcc
Confidence 38999995
No 10
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=3.27 E-value=1.9e+02 Score=25.71 Aligned_cols=13 Identities=23% Similarity=0.792 Sum_probs=11.0
Q ss_pred eeecCCCCCCchh
Q 036898 27 IMEIKLYNFTPEQ 39 (396)
Q Consensus 27 I~evDVY~~ePwe 39 (396)
+.++|||++.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 5779999999983
Done!