Query 036900
Match_columns 247
No_of_seqs 196 out of 1379
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:31:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.2E-43 2.6E-48 320.7 24.4 226 4-245 8-239 (477)
2 PLN02534 UDP-glycosyltransfera 100.0 8.4E-43 1.8E-47 315.1 24.1 232 4-247 7-242 (491)
3 PLN02555 limonoid glucosyltran 100.0 1E-41 2.2E-46 307.6 23.1 226 1-243 1-236 (480)
4 PLN02173 UDP-glucosyl transfer 100.0 1.3E-41 2.9E-46 304.6 22.6 213 1-242 1-215 (449)
5 PLN02670 transferase, transfer 100.0 3.5E-41 7.5E-46 303.3 23.3 229 4-246 5-239 (472)
6 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.8E-40 3.9E-45 298.1 22.0 219 1-247 1-230 (451)
7 PLN02992 coniferyl-alcohol glu 100.0 5.7E-40 1.2E-44 295.8 22.4 217 1-242 1-222 (481)
8 PLN02764 glycosyltransferase f 100.0 9E-40 2E-44 292.3 23.0 222 1-246 1-225 (453)
9 PLN02152 indole-3-acetate beta 100.0 9.3E-40 2E-44 293.1 21.2 213 5-242 3-218 (455)
10 PLN02562 UDP-glycosyltransfera 100.0 1.6E-39 3.6E-44 292.3 22.6 215 4-243 5-228 (448)
11 PLN00164 glucosyltransferase; 100.0 4.1E-39 8.9E-44 291.8 20.9 215 4-243 2-229 (480)
12 PLN03015 UDP-glucosyl transfer 100.0 7.8E-39 1.7E-43 287.1 22.4 217 5-243 3-227 (470)
13 PLN03004 UDP-glycosyltransfera 100.0 1.4E-38 3.1E-43 285.2 22.0 222 5-244 3-232 (451)
14 PLN00414 glycosyltransferase f 100.0 4.4E-38 9.6E-43 282.3 21.7 215 1-246 1-218 (446)
15 PLN02208 glycosyltransferase f 100.0 7.7E-38 1.7E-42 280.5 21.4 215 4-246 3-219 (442)
16 PLN03007 UDP-glucosyltransfera 100.0 6.9E-37 1.5E-41 278.1 23.8 232 1-246 1-243 (482)
17 PLN02167 UDP-glycosyltransfera 100.0 8.9E-37 1.9E-41 276.8 21.3 222 4-243 2-238 (475)
18 PLN02448 UDP-glycosyltransfera 100.0 2E-36 4.2E-41 273.7 22.5 214 4-245 9-233 (459)
19 PLN02554 UDP-glycosyltransfera 100.0 1.4E-36 3E-41 275.9 21.1 214 5-242 2-232 (481)
20 PLN02207 UDP-glycosyltransfera 100.0 2.3E-36 4.9E-41 271.9 21.8 217 4-242 2-233 (468)
21 PLN02210 UDP-glucosyl transfer 100.0 3.1E-36 6.7E-41 271.5 21.9 208 4-242 7-221 (456)
22 cd03784 GT1_Gtf_like This fami 99.6 2E-14 4.3E-19 128.2 10.5 131 7-155 2-136 (401)
23 TIGR01426 MGT glycosyltransfer 99.5 1.9E-13 4.1E-18 121.8 11.1 121 11-153 1-122 (392)
24 KOG1192 UDP-glucuronosyl and U 99.4 7.4E-14 1.6E-18 127.9 4.7 225 5-240 5-238 (496)
25 PF03033 Glyco_transf_28: Glyc 99.2 2.1E-11 4.5E-16 92.8 5.8 127 8-155 1-132 (139)
26 COG1819 Glycosyl transferases, 98.2 3.5E-06 7.6E-11 75.6 6.9 54 6-72 2-55 (406)
27 PF13528 Glyco_trans_1_3: Glyc 98.1 6.2E-05 1.3E-09 65.0 12.3 123 7-155 2-125 (318)
28 PHA03392 egt ecdysteroid UDP-g 98.1 2.4E-05 5.2E-10 72.2 9.7 133 6-155 21-169 (507)
29 PF00201 UDPGT: UDP-glucoronos 98.0 0.00016 3.5E-09 66.5 13.1 35 7-43 2-36 (500)
30 TIGR00661 MJ1255 conserved hyp 97.8 0.00031 6.7E-09 61.0 11.4 117 10-154 5-123 (321)
31 PRK12446 undecaprenyldiphospho 97.1 0.011 2.4E-07 52.2 12.0 122 7-156 3-126 (352)
32 COG0707 MurG UDP-N-acetylgluco 95.9 0.11 2.4E-06 45.9 10.9 118 8-153 3-123 (357)
33 cd03785 GT1_MurG MurG is an N- 95.8 0.21 4.5E-06 43.3 12.4 115 8-150 2-118 (350)
34 TIGR00215 lpxB lipid-A-disacch 95.8 0.1 2.2E-06 46.6 10.4 37 6-44 6-42 (385)
35 TIGR03590 PseG pseudaminic aci 95.4 0.18 4E-06 42.9 10.3 33 13-46 11-43 (279)
36 TIGR01133 murG undecaprenyldip 95.4 0.38 8.1E-06 41.7 12.4 36 7-43 2-37 (348)
37 PRK00726 murG undecaprenyldiph 95.3 0.42 9E-06 41.8 12.5 116 7-150 3-120 (357)
38 cd03816 GT1_ALG1_like This fam 94.2 1.4 3E-05 39.6 13.1 38 5-43 3-40 (415)
39 cd03818 GT1_ExpC_like This fam 94.1 1 2.3E-05 39.9 12.0 104 21-151 12-116 (396)
40 PLN00142 sucrose synthase 92.7 1 2.2E-05 44.0 10.0 30 122-151 407-438 (815)
41 PRK00025 lpxB lipid-A-disaccha 92.3 1.7 3.7E-05 38.2 10.4 35 7-43 3-37 (380)
42 cd03800 GT1_Sucrose_synthase T 91.7 1.1 2.3E-05 39.3 8.5 28 17-45 22-49 (398)
43 PRK10307 putative glycosyl tra 91.3 2.9 6.4E-05 37.2 10.9 22 22-44 21-42 (412)
44 TIGR02470 sucr_synth sucrose s 91.1 5.9 0.00013 38.8 13.1 120 16-151 279-416 (784)
45 PF13477 Glyco_trans_4_2: Glyc 89.7 4.8 0.0001 29.6 9.4 34 8-45 2-35 (139)
46 cd03794 GT1_wbuB_like This fam 89.5 4.3 9.4E-05 34.6 10.2 29 16-45 14-42 (394)
47 COG4671 Predicted glycosyl tra 89.5 1.1 2.5E-05 39.2 6.2 58 5-73 9-69 (400)
48 cd04962 GT1_like_5 This family 88.3 6.2 0.00013 34.1 10.4 37 7-44 2-39 (371)
49 TIGR02468 sucrsPsyn_pln sucros 87.5 5.7 0.00012 40.1 10.4 28 17-45 196-225 (1050)
50 cd03823 GT1_ExpE7_like This fa 86.1 11 0.00025 31.8 10.6 29 16-45 15-43 (359)
51 COG3980 spsG Spore coat polysa 85.6 1 2.2E-05 38.3 3.6 33 14-47 13-45 (318)
52 TIGR02472 sucr_P_syn_N sucrose 82.1 15 0.00032 33.2 10.0 23 20-43 30-54 (439)
53 PRK02261 methylaspartate mutas 81.4 5 0.00011 30.3 5.7 48 4-52 2-49 (137)
54 PF13579 Glyco_trans_4_4: Glyc 80.5 2.5 5.4E-05 31.4 3.8 95 22-151 7-103 (160)
55 cd02067 B12-binding B12 bindin 79.8 4.9 0.00011 29.2 5.0 44 7-51 1-44 (119)
56 cd03796 GT1_PIG-A_like This fa 78.9 10 0.00022 33.6 7.8 27 17-44 15-41 (398)
57 PF12000 Glyco_trans_4_3: Gkyc 78.2 31 0.00066 27.2 9.3 43 108-151 52-95 (171)
58 TIGR03449 mycothiol_MshA UDP-N 77.5 29 0.00063 30.6 10.3 29 15-44 19-47 (405)
59 cd03819 GT1_WavL_like This fam 76.8 27 0.00058 29.8 9.7 27 17-44 11-37 (355)
60 PF04007 DUF354: Protein of un 76.0 53 0.0012 28.8 11.1 107 17-158 11-117 (335)
61 cd03814 GT1_like_2 This family 74.9 5.3 0.00011 34.0 4.7 29 16-45 14-42 (364)
62 PF13439 Glyco_transf_4: Glyco 74.3 4 8.6E-05 30.8 3.4 28 17-45 13-40 (177)
63 cd03808 GT1_cap1E_like This fa 72.2 5.7 0.00012 33.4 4.2 38 8-46 2-39 (359)
64 PRK06321 replicative DNA helic 70.0 56 0.0012 30.2 10.3 43 8-50 229-271 (472)
65 cd02070 corrinoid_protein_B12- 68.4 15 0.00033 29.5 5.7 47 5-52 82-128 (201)
66 cd03817 GT1_UGDG_like This fam 68.2 9.6 0.00021 32.3 4.8 33 12-45 10-42 (374)
67 TIGR02370 pyl_corrinoid methyl 68.2 16 0.00035 29.3 5.7 48 5-53 84-131 (197)
68 PRK09165 replicative DNA helic 67.5 67 0.0015 29.8 10.3 44 8-51 220-277 (497)
69 PRK08760 replicative DNA helic 66.8 57 0.0012 30.1 9.7 43 8-50 232-274 (476)
70 cd02069 methionine_synthase_B1 64.8 20 0.00044 29.2 5.7 48 4-52 87-134 (213)
71 PRK05595 replicative DNA helic 64.7 81 0.0018 28.7 10.2 44 8-51 204-247 (444)
72 TIGR03600 phage_DnaB phage rep 64.4 1.1E+02 0.0024 27.6 11.0 44 8-51 197-240 (421)
73 PF02310 B12-binding: B12 bind 62.3 31 0.00066 24.7 5.9 44 7-51 2-45 (121)
74 cd03806 GT1_ALG11_like This fa 62.2 87 0.0019 28.1 9.9 32 123-154 107-139 (419)
75 PRK01021 lpxB lipid-A-disaccha 61.4 57 0.0012 31.1 8.6 45 107-154 297-346 (608)
76 TIGR00665 DnaB replicative DNA 61.4 1.1E+02 0.0025 27.5 10.6 43 8-50 198-240 (434)
77 PRK05749 3-deoxy-D-manno-octul 61.0 1.1E+02 0.0024 27.2 10.5 100 7-151 51-154 (425)
78 PF06506 PrpR_N: Propionate ca 60.9 24 0.00052 27.6 5.4 45 106-156 111-155 (176)
79 PRK07773 replicative DNA helic 59.6 1.2E+02 0.0027 30.4 11.1 44 8-51 220-263 (886)
80 cd03821 GT1_Bme6_like This fam 59.5 16 0.00036 30.8 4.6 30 15-45 13-42 (375)
81 cd03805 GT1_ALG2_like This fam 58.3 18 0.00039 31.6 4.7 22 21-43 18-39 (392)
82 COG0299 PurN Folate-dependent 56.7 18 0.00039 29.1 3.9 32 123-154 29-60 (200)
83 PRK13609 diacylglycerol glucos 55.5 22 0.00047 31.3 4.8 37 5-42 4-41 (380)
84 PLN02275 transferase, transfer 55.2 1.5E+02 0.0032 26.0 13.8 40 1-43 1-42 (371)
85 cd02071 MM_CoA_mut_B12_BD meth 55.0 80 0.0017 23.0 11.6 43 7-50 1-43 (122)
86 PLN02871 UDP-sulfoquinovose:DA 53.5 27 0.00059 31.8 5.2 39 5-44 58-101 (465)
87 PRK05636 replicative DNA helic 52.5 86 0.0019 29.2 8.3 43 8-50 268-310 (505)
88 cd04951 GT1_WbdM_like This fam 51.4 18 0.00038 30.9 3.5 28 15-43 11-38 (360)
89 TIGR02853 spore_dpaA dipicolin 51.2 60 0.0013 27.7 6.6 21 22-43 13-33 (287)
90 cd01424 MGS_CPS_II Methylglyox 50.3 89 0.0019 22.1 8.1 31 18-51 11-41 (110)
91 cd01635 Glycosyltransferase_GT 49.9 27 0.00058 27.2 4.1 26 15-41 12-37 (229)
92 cd03820 GT1_amsD_like This fam 48.1 40 0.00086 28.0 5.1 29 16-45 13-41 (348)
93 cd03795 GT1_like_4 This family 47.5 35 0.00076 29.0 4.7 30 15-45 13-42 (357)
94 cd01018 ZntC Metal binding pro 46.4 81 0.0018 26.4 6.7 50 108-160 205-256 (266)
95 KOG2941 Beta-1,4-mannosyltrans 46.4 1E+02 0.0022 27.5 7.1 59 4-74 11-71 (444)
96 COG1484 DnaC DNA replication p 45.6 37 0.00079 28.5 4.4 46 7-53 107-152 (254)
97 COG1435 Tdk Thymidine kinase [ 44.9 1.7E+02 0.0036 23.7 9.3 38 7-45 5-43 (201)
98 cd03811 GT1_WabH_like This fam 42.9 47 0.001 27.6 4.7 31 14-45 10-40 (353)
99 cd04955 GT1_like_6 This family 42.0 44 0.00096 28.5 4.5 28 17-45 16-43 (363)
100 cd03825 GT1_wcfI_like This fam 42.0 42 0.00091 28.6 4.4 38 7-45 2-41 (365)
101 PF08897 DUF1841: Domain of un 41.7 18 0.00039 27.3 1.7 18 14-31 57-74 (137)
102 PF09314 DUF1972: Domain of un 40.3 41 0.00088 26.9 3.6 40 23-73 24-63 (185)
103 cd03807 GT1_WbnK_like This fam 40.0 71 0.0015 26.7 5.5 31 14-45 10-40 (365)
104 PF00070 Pyr_redox: Pyridine n 39.7 49 0.0011 21.8 3.5 23 21-44 10-32 (80)
105 PLN02891 IMP cyclohydrolase 39.5 1.1E+02 0.0023 28.8 6.5 43 22-82 35-77 (547)
106 PF04244 DPRP: Deoxyribodipyri 39.4 39 0.00084 27.8 3.5 27 17-44 46-72 (224)
107 cd03802 GT1_AviGT4_like This f 39.3 62 0.0013 27.2 5.0 27 17-44 20-46 (335)
108 PRK00881 purH bifunctional pho 38.8 1.3E+02 0.0028 28.2 7.0 28 21-51 16-43 (513)
109 PRK06249 2-dehydropantoate 2-r 37.8 48 0.001 28.5 4.0 38 1-44 1-38 (313)
110 PF07894 DUF1669: Protein of u 37.6 58 0.0013 27.9 4.3 47 107-154 133-184 (284)
111 PF08026 Antimicrobial_5: Bee 37.2 4.3 9.4E-05 22.7 -1.6 21 11-31 16-36 (39)
112 PF02441 Flavoprotein: Flavopr 36.4 58 0.0013 23.9 3.8 43 7-51 2-44 (129)
113 PF01555 N6_N4_Mtase: DNA meth 36.4 61 0.0013 25.7 4.3 43 107-154 179-223 (231)
114 COG2185 Sbm Methylmalonyl-CoA 36.3 66 0.0014 24.5 4.0 40 4-44 11-50 (143)
115 cd02065 B12-binding_like B12 b 36.2 1E+02 0.0023 21.9 5.2 43 7-50 1-43 (125)
116 cd03801 GT1_YqgM_like This fam 35.3 65 0.0014 26.8 4.5 29 16-45 14-42 (374)
117 PLN02331 phosphoribosylglycina 35.2 65 0.0014 26.2 4.1 45 108-152 12-57 (207)
118 PF12146 Hydrolase_4: Putative 34.6 82 0.0018 21.1 4.0 33 7-40 17-49 (79)
119 PF04127 DFP: DNA / pantothena 34.2 46 0.001 26.5 3.1 29 13-44 25-53 (185)
120 PF00201 UDPGT: UDP-glucoronos 33.6 4 8.6E-05 37.5 -3.6 26 124-149 120-145 (500)
121 PRK14089 ipid-A-disaccharide s 33.3 1.4E+02 0.0031 26.3 6.3 33 122-154 75-112 (347)
122 PRK13011 formyltetrahydrofolat 33.0 65 0.0014 27.6 4.0 43 107-151 101-144 (286)
123 PF04413 Glycos_transf_N: 3-De 32.9 2.5E+02 0.0053 22.2 8.7 100 7-152 22-126 (186)
124 PRK00654 glgA glycogen synthas 32.6 71 0.0015 29.1 4.5 27 17-44 18-44 (466)
125 PRK04940 hypothetical protein; 31.8 1.2E+02 0.0026 24.1 5.1 35 124-158 61-96 (180)
126 TIGR00355 purH phosphoribosyla 31.6 1.2E+02 0.0025 28.4 5.5 43 22-82 13-55 (511)
127 cd03791 GT1_Glycogen_synthase_ 31.2 43 0.00093 30.4 2.8 22 22-44 22-43 (476)
128 PF08323 Glyco_transf_5: Starc 31.2 41 0.00089 27.9 2.5 23 21-44 21-43 (245)
129 PTZ00445 p36-lilke protein; Pr 31.1 53 0.0011 26.9 2.9 28 17-45 74-102 (219)
130 PLN02650 dihydroflavonol-4-red 30.9 84 0.0018 27.2 4.5 36 1-41 1-36 (351)
131 PF07355 GRDB: Glycine/sarcosi 30.3 1.2E+02 0.0026 26.8 5.2 29 123-151 80-118 (349)
132 PRK08305 spoVFB dipicolinate s 29.9 93 0.002 25.1 4.1 40 5-46 5-45 (196)
133 PF13450 NAD_binding_8: NAD(P) 29.9 70 0.0015 20.6 2.9 20 23-43 9-28 (68)
134 PHA02542 41 41 helicase; Provi 29.4 74 0.0016 29.4 4.0 45 107-151 285-351 (473)
135 PF01380 SIS: SIS domain SIS d 29.0 1.4E+02 0.0031 21.2 4.9 38 8-46 55-92 (131)
136 cd03798 GT1_wlbH_like This fam 29.0 94 0.002 25.9 4.4 30 15-45 13-42 (377)
137 TIGR00347 bioD dethiobiotin sy 29.0 1.3E+02 0.0029 22.7 4.9 26 14-40 7-32 (166)
138 PF02142 MGS: MGS-like domain 28.5 57 0.0012 22.5 2.5 27 22-51 2-28 (95)
139 TIGR02329 propionate_PrpR prop 28.5 1.7E+02 0.0038 27.4 6.3 42 106-153 131-172 (526)
140 PF07881 Fucose_iso_N1: L-fuco 28.2 1.6E+02 0.0035 23.1 5.0 41 104-144 29-73 (171)
141 smart00851 MGS MGS-like domain 28.1 81 0.0017 21.4 3.2 27 22-51 2-28 (90)
142 COG0162 TyrS Tyrosyl-tRNA synt 28.0 65 0.0014 29.1 3.3 26 16-43 48-73 (401)
143 PF02603 Hpr_kinase_N: HPr Ser 27.7 58 0.0013 24.1 2.5 33 122-154 81-115 (127)
144 COG4081 Uncharacterized protei 27.6 1.2E+02 0.0026 22.8 4.0 35 8-43 6-41 (148)
145 cd00861 ProRS_anticodon_short 27.3 1.2E+02 0.0026 20.4 3.9 34 7-41 3-38 (94)
146 PF00391 PEP-utilizers: PEP-ut 27.1 94 0.002 20.8 3.3 30 123-152 30-61 (80)
147 PRK10422 lipopolysaccharide co 27.1 1.4E+02 0.003 26.0 5.2 50 1-50 1-51 (352)
148 PLN02828 formyltetrahydrofolat 27.0 1.1E+02 0.0025 25.9 4.4 46 107-152 82-131 (268)
149 cd02034 CooC The accessory pro 26.9 1.7E+02 0.0037 21.1 4.9 37 7-44 1-37 (116)
150 TIGR00234 tyrS tyrosyl-tRNA sy 26.6 64 0.0014 28.8 3.0 26 16-43 46-71 (377)
151 cd01988 Na_H_Antiporter_C The 26.5 1.4E+02 0.003 21.2 4.4 34 9-42 2-35 (132)
152 PLN02846 digalactosyldiacylgly 26.4 1.1E+02 0.0023 28.3 4.4 40 4-44 3-47 (462)
153 PF05728 UPF0227: Uncharacteri 26.1 1.5E+02 0.0033 23.5 4.8 49 109-161 49-98 (187)
154 PF03720 UDPG_MGDP_dh_C: UDP-g 26.0 90 0.0019 22.1 3.2 30 20-50 17-46 (106)
155 cd01981 Pchlide_reductase_B Pc 25.9 1.1E+02 0.0023 27.7 4.4 26 123-151 370-395 (430)
156 COG0467 RAD55 RecA-superfamily 25.6 1.8E+02 0.0039 24.1 5.4 46 5-51 23-68 (260)
157 PF07015 VirC1: VirC1 protein; 25.2 1.3E+02 0.0027 25.0 4.2 34 14-48 11-44 (231)
158 PF02780 Transketolase_C: Tran 25.2 1.7E+02 0.0036 21.1 4.6 35 5-42 9-43 (124)
159 cd01141 TroA_d Periplasmic bin 24.9 1.3E+02 0.0028 23.2 4.2 39 107-152 60-100 (186)
160 PRK14106 murD UDP-N-acetylmura 24.8 1.3E+02 0.0028 27.1 4.8 34 5-44 5-38 (450)
161 cd02067 B12-binding B12 bindin 24.6 1.3E+02 0.0029 21.4 4.0 35 5-40 50-85 (119)
162 cd03115 SRP The signal recogni 24.5 2.1E+02 0.0045 21.8 5.3 38 8-46 3-40 (173)
163 PF00289 CPSase_L_chain: Carba 24.5 62 0.0014 23.3 2.1 29 11-42 77-105 (110)
164 PRK12311 rpsB 30S ribosomal pr 24.4 4.9E+02 0.011 22.8 8.1 33 123-155 152-186 (326)
165 cd01017 AdcA Metal binding pro 24.4 1.8E+02 0.004 24.5 5.3 30 123-152 220-251 (282)
166 COG2099 CobK Precorrin-6x redu 24.0 1.4E+02 0.003 25.2 4.2 23 22-45 14-36 (257)
167 TIGR02095 glgA glycogen/starch 23.6 72 0.0016 29.1 2.8 24 20-44 21-44 (473)
168 TIGR02193 heptsyl_trn_I lipopo 23.6 1.6E+02 0.0034 25.1 4.8 44 7-50 1-45 (319)
169 TIGR02699 archaeo_AfpA archaeo 23.5 1.3E+02 0.0027 23.8 3.8 36 12-47 5-41 (174)
170 COG0052 RpsB Ribosomal protein 23.1 1.6E+02 0.0034 24.8 4.4 33 123-155 156-190 (252)
171 KOG1615 Phosphoserine phosphat 23.0 74 0.0016 25.8 2.4 40 105-147 89-129 (227)
172 PF01297 TroA: Periplasmic sol 22.6 1.4E+02 0.003 24.7 4.2 31 123-153 199-231 (256)
173 PRK09620 hypothetical protein; 22.4 98 0.0021 25.5 3.1 26 15-43 27-52 (229)
174 TIGR02137 HSK-PSP phosphoserin 22.1 69 0.0015 25.8 2.1 41 105-148 69-109 (203)
175 PF01497 Peripla_BP_2: Peripla 21.9 1.5E+02 0.0032 23.7 4.2 41 107-154 51-93 (238)
176 PF01975 SurE: Survival protei 21.5 90 0.0019 25.1 2.7 26 22-48 16-41 (196)
177 COG1255 Uncharacterized protei 21.5 1.1E+02 0.0024 22.6 2.8 20 21-41 24-43 (129)
178 PRK03359 putative electron tra 21.3 1.7E+02 0.0037 24.6 4.4 31 123-153 112-148 (256)
179 TIGR01675 plant-AP plant acid 21.1 1.4E+02 0.0031 24.6 3.8 26 19-45 122-147 (229)
180 TIGR00639 PurN phosphoribosylg 21.0 1.9E+02 0.004 23.1 4.4 30 123-152 29-58 (190)
181 COG2085 Predicted dinucleotide 20.8 1.1E+02 0.0025 24.9 3.1 30 14-46 7-36 (211)
182 TIGR03087 stp1 sugar transfera 20.7 86 0.0019 27.7 2.7 32 11-44 8-40 (397)
183 COG5148 RPN10 26S proteasome r 20.7 2.3E+02 0.005 22.8 4.6 36 7-43 110-145 (243)
184 TIGR01680 Veg_Stor_Prot vegeta 20.7 1.6E+02 0.0034 25.2 4.0 27 18-45 146-172 (275)
185 TIGR01917 gly_red_sel_B glycin 20.7 2.2E+02 0.0047 26.0 5.0 29 123-151 76-114 (431)
186 cd03812 GT1_CapH_like This fam 20.7 1.1E+02 0.0024 25.9 3.4 31 14-45 10-40 (358)
187 COG3150 Predicted esterase [Ge 20.7 1.6E+02 0.0034 23.4 3.7 45 108-157 48-94 (191)
188 cd00293 USP_Like Usp: Universa 20.6 1.8E+02 0.0039 20.0 4.0 33 10-42 3-35 (130)
189 TIGR01918 various_sel_PB selen 20.5 2.2E+02 0.0048 25.9 5.1 29 123-151 76-114 (431)
190 PF03853 YjeF_N: YjeF-related 20.3 1.2E+02 0.0026 23.5 3.1 35 5-41 25-59 (169)
191 KOG4589 Cell division protein 20.2 1E+02 0.0023 24.9 2.7 23 110-135 126-148 (232)
192 PRK06732 phosphopantothenate-- 20.2 1.1E+02 0.0024 25.1 3.0 30 10-42 19-48 (229)
No 1
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-43 Score=320.67 Aligned_cols=226 Identities=27% Similarity=0.494 Sum_probs=176.5
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCC
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPN 83 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~ 83 (247)
.++|||++|||+|||+|||++|||+|++ +|++|||++|+.|+.++.+.... . ++|+++.+|+|. .+++|+|
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~-~G~~VTfv~T~~n~~~~~~~~~~--~-----~~i~~~~lp~P~-~~~lPdG 78 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLAL-RGLTITVLVTPKNLPFLNPLLSK--H-----PSIETLVLPFPS-HPSIPSG 78 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCCcHHHHhhhccc--C-----CCeeEEeCCCCC-cCCCCCC
Confidence 4789999999999999999999999999 99999999999999877654221 1 469999999763 3689988
Q ss_pred CCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHHHHHH
Q 036900 84 TENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTLAYIS 163 (247)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 163 (247)
.++.++.+......+..+.+.+.+.++++++++. .+++|||+|+|++|+.+||+++|||+++|||++|+++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~----~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~ 154 (477)
T PLN02863 79 VENVKDLPPSGFPLMIHALGELYAPLLSWFRSHP----SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYS 154 (477)
T ss_pred CcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCC----CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHH
Confidence 7665544432234455666777788888887642 467999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCC--C-CCcc---ccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcccchhcHhHH
Q 036900 164 LWLNLPHRKT--N-SDEF---TLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTAEEIEPGAL 237 (247)
Q Consensus 164 ~~~~~~~~~~--~-~~~~---~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf~eLE~~~~ 237 (247)
++...+.... . .+.+ .+||+|. ++.+|||.+++.....+...+.+.+..+..++++|||+|||+|||++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 231 (477)
T PLN02863 155 LWREMPTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYL 231 (477)
T ss_pred HhhcccccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHH
Confidence 8765443211 1 1123 3667666 9999999877643223345556666666677899999999999999999
Q ss_pred HHHHHhcC
Q 036900 238 QWLRNYTK 245 (247)
Q Consensus 238 ~~l~~~~~ 245 (247)
+++++.+|
T Consensus 232 ~~~~~~~~ 239 (477)
T PLN02863 232 EHLKKELG 239 (477)
T ss_pred HHHHhhcC
Confidence 99988765
No 2
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=8.4e-43 Score=315.14 Aligned_cols=232 Identities=26% Similarity=0.486 Sum_probs=173.9
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCC
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPN 83 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~ 83 (247)
++.|||++|||+|||+|||++|||+|++ ||+.|||++|+.|+.++.+....... .. .+|+|+.+|+|...+++|++
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~~~~~--~~-~~i~~~~lp~p~~~dglp~~ 82 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAE-RGVIVSLVTTPQNASRFAKTIDRARE--SG-LPIRLVQIPFPCKEVGLPIG 82 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHh-CCCeEEEEECCCcHHHHhhhhhhccc--cC-CCeEEEEcCCCCccCCCCCC
Confidence 4579999999999999999999999999 99999999999998777654321100 00 24999999987544689887
Q ss_pred CCCccCcchh-hHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHHHHH
Q 036900 84 TENTENLSFD-LIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTLAYI 162 (247)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~ 162 (247)
.++.++.+.. .+..+..++..+.+.++++|++. +.+++|||+|+|++|+.+||+++|||+|+||+++|+++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~----~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~ 158 (491)
T PLN02534 83 CENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA----KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSH 158 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc----CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence 6654444432 23455566677888999988764 246899999999999999999999999999999999999887
Q ss_pred HhhhcCCCCCCCC--CccccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHh-hccceEEEEcccchhcHhHHHH
Q 036900 163 SLWLNLPHRKTNS--DEFTLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQ-SLKSYGMLCNTAEEIEPGALQW 239 (247)
Q Consensus 163 ~~~~~~~~~~~~~--~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~-~~~a~gilvNTf~eLE~~~~~~ 239 (247)
++..+.+...... +.+.+||+|+.+.++.+|||+.+... .. .+.+...... .++++|||+|||+|||++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~---~~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~ 234 (491)
T PLN02534 159 NIRLHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL---PD-LDDVRNKMREAESTAFGVVVNSFNELEHGCAEA 234 (491)
T ss_pred HHHHhcccccCCCCCceeecCCCCccccccHHHCChhhcCc---cc-HHHHHHHHHhhcccCCEEEEecHHHhhHHHHHH
Confidence 6654433221111 23678999876679999999875422 12 2233333333 3568899999999999999999
Q ss_pred HHHhcCCC
Q 036900 240 LRNYTKLP 247 (247)
Q Consensus 240 l~~~~~~~ 247 (247)
+++.+|+|
T Consensus 235 l~~~~~~~ 242 (491)
T PLN02534 235 YEKAIKKK 242 (491)
T ss_pred HHhhcCCc
Confidence 98876653
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1e-41 Score=307.62 Aligned_cols=226 Identities=19% Similarity=0.317 Sum_probs=167.4
Q ss_pred CCCC--CceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhh--c-CC-CCCCCCCccceeEEecCCC
Q 036900 1 MGSE--NEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNT--I-SC-NNPNSSEKFNINLVELPFC 74 (247)
Q Consensus 1 m~~~--~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~--~-~~-~~~~~~~~~~i~~~~lp~~ 74 (247)
|++. ++|||++|||+|||+|||++|||+|++ ||+.|||++|+.|+.++.+. . +. ... .....++|..+|
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~-~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~--~~~~~i~~~~~p-- 75 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLAS-KGLLVTFVTTESWGKKMRQANKIQDGVLKP--VGDGFIRFEFFE-- 75 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHh-CCCeEEEEeccchhhhhhcccccccccccc--CCCCeEEEeeCC--
Confidence 7754 689999999999999999999999999 99999999999888776531 1 10 000 000235555544
Q ss_pred CCCCCCCCCCCCccCcchhhHHHHHHHH-HhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccc
Q 036900 75 SSDHGLPPNTENTENLSFDLIINFFASS-QSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTG 153 (247)
Q Consensus 75 ~~~~~lp~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 153 (247)
+|+|++.+... ++..++..+ +.+.++++++++++.. ++.|++|||+|+|++|+.+||+++|||+++||++
T Consensus 76 ---dglp~~~~~~~-----~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~ 146 (480)
T PLN02555 76 ---DGWAEDDPRRQ-----DLDLYLPQLELVGKREIPNLVKRYAE-QGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQ 146 (480)
T ss_pred ---CCCCCCccccc-----CHHHHHHHHHHhhhHHHHHHHHHHhc-cCCCceEEEECCcchHHHHHHHHcCCCeEEeecc
Confidence 58877654221 123445444 3667899999987632 1345699999999999999999999999999999
Q ss_pred cHHHHHHHHHhhhc-CCCCCCC-C-CccccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcccc
Q 036900 154 GGYGTLAYISLWLN-LPHRKTN-S-DEFTLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTAE 230 (247)
Q Consensus 154 ~a~~~~~~~~~~~~-~~~~~~~-~-~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf~ 230 (247)
+|++++++++++.. ++..... . +.+.+||+|. ++.+|||+++...+..+...+.+.+..++..+++|||+|||+
T Consensus 147 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~ 223 (480)
T PLN02555 147 SCACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQ 223 (480)
T ss_pred cHHHHHHHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchH
Confidence 99999999988543 1222111 1 2367899988 999999987753222334456677777888899999999999
Q ss_pred hhcHhHHHHHHHh
Q 036900 231 EIEPGALQWLRNY 243 (247)
Q Consensus 231 eLE~~~~~~l~~~ 243 (247)
|||+++++++++.
T Consensus 224 eLE~~~~~~l~~~ 236 (480)
T PLN02555 224 ELEKEIIDYMSKL 236 (480)
T ss_pred HHhHHHHHHHhhC
Confidence 9999999999763
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.3e-41 Score=304.55 Aligned_cols=213 Identities=16% Similarity=0.307 Sum_probs=165.7
Q ss_pred CCCCCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCC
Q 036900 1 MGSENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGL 80 (247)
Q Consensus 1 m~~~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~l 80 (247)
|+.+++|||++|||+|||+|||++|||+|++ +|++|||++|+.|.+++.... . ++|+|+.+| +|+
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~-~G~~vT~v~t~~~~~~~~~~~----~-----~~i~~~~ip-----dgl 65 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHS-KGFKTTHTLTTFIFNTIHLDP----S-----SPISIATIS-----DGY 65 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHc-CCCEEEEEECCchhhhcccCC----C-----CCEEEEEcC-----CCC
Confidence 7777889999999999999999999999999 999999999999876653311 1 469999987 488
Q ss_pred CCC-CCCccCcchhhHHHHHHHH-HhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHH
Q 036900 81 PPN-TENTENLSFDLIINFFASS-QSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGT 158 (247)
Q Consensus 81 p~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~ 158 (247)
|++ .++.++ ...++.++ +.+.++++++++++..+ +.|++|||+|+|++|+.+||+++|||+|+||+++|+++
T Consensus 66 p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~-~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~ 139 (449)
T PLN02173 66 DQGGFSSAGS-----VPEYLQNFKTFGSKTVADIIRKHQST-DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVN 139 (449)
T ss_pred CCcccccccC-----HHHHHHHHHHhhhHHHHHHHHHhhcc-CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHH
Confidence 874 232221 23455554 46788999999875321 23459999999999999999999999999999999998
Q ss_pred HHHHHhhhcCCCCCCCCCccccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcccchhcHhHHH
Q 036900 159 LAYISLWLNLPHRKTNSDEFTLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTAEEIEPGALQ 238 (247)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf~eLE~~~~~ 238 (247)
+++++... . . ....+.+||+|. ++.+|||+++...+..+...+.+.+..++..+++|||+|||+|||+++++
T Consensus 140 ~~~~~~~~--~--~-~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 211 (449)
T PLN02173 140 YINYLSYI--N--N-GSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENE 211 (449)
T ss_pred HHHHhHHh--c--c-CCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHH
Confidence 77764321 1 1 112256899987 99999998876433333455667777888899999999999999999999
Q ss_pred HHHH
Q 036900 239 WLRN 242 (247)
Q Consensus 239 ~l~~ 242 (247)
++++
T Consensus 212 ~~~~ 215 (449)
T PLN02173 212 LLSK 215 (449)
T ss_pred HHHh
Confidence 9975
No 5
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.5e-41 Score=303.31 Aligned_cols=229 Identities=24% Similarity=0.318 Sum_probs=167.6
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCC
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPN 83 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~ 83 (247)
+++|||++|||+|||+|||++|||+|++ ||++|||++|+.|+.++..... ... ++|+++.+|+|. .+|+|++
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~-~G~~vT~v~t~~n~~~~~~~~~-~~~-----~~i~~~~lp~p~-~dglp~~ 76 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQ-KGHKISFISTPRNLHRLPKIPS-QLS-----SSITLVSFPLPS-VPGLPSS 76 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHh-CCCEEEEEeCCchHHhhhhccc-cCC-----CCeeEEECCCCc-cCCCCCC
Confidence 4679999999999999999999999999 9999999999999877653211 111 469999999873 3688877
Q ss_pred CCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHHHHHH
Q 036900 84 TENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTLAYIS 163 (247)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 163 (247)
.++.++.+......+..+.+.+.+.++++++++ +++|||+|+|++|+.+||+++|||+|+||+++|++++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~ 150 (472)
T PLN02670 77 AESSTDVPYTKQQLLKKAFDLLEPPLTTFLETS------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGP 150 (472)
T ss_pred cccccccchhhHHHHHHHHHHhHHHHHHHHHhC------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhh
Confidence 554333331111233455567888899988764 47999999999999999999999999999999999999876
Q ss_pred hhhcCCCCC--CCCCcc-ccCCC-Cc--CcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcccchhcHhHH
Q 036900 164 LWLNLPHRK--TNSDEF-TLPGF-PE--RCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTAEEIEPGAL 237 (247)
Q Consensus 164 ~~~~~~~~~--~~~~~~-~ipg~-p~--~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf~eLE~~~~ 237 (247)
......... ...+.+ .+||. |. ...++.+|||+++............+.+....+.+++|||+|||+|||++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l 230 (472)
T PLN02670 151 PSSLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWF 230 (472)
T ss_pred hHhhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHH
Confidence 543221111 111122 35654 31 1247889999887533222233444556666788999999999999999999
Q ss_pred HHHHHhcCC
Q 036900 238 QWLRNYTKL 246 (247)
Q Consensus 238 ~~l~~~~~~ 246 (247)
+++++.+++
T Consensus 231 ~~l~~~~~~ 239 (472)
T PLN02670 231 DLLSDLYRK 239 (472)
T ss_pred HHHHHhhCC
Confidence 999886554
No 6
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.8e-40 Score=298.10 Aligned_cols=219 Identities=22% Similarity=0.351 Sum_probs=160.7
Q ss_pred CCC--CCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCC
Q 036900 1 MGS--ENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDH 78 (247)
Q Consensus 1 m~~--~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~ 78 (247)
|+. .++|||++|||+|||+|||++|||+|++ ||++|||++|+.|+.+ .. ... ++|+|+.+| +
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~-~G~~VT~v~T~~n~~~--~~---~~~-----~~i~~~~ip-----~ 64 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHL-KGFSITIAQTKFNYFS--PS---DDF-----TDFQFVTIP-----E 64 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHc-CCCEEEEEeCcccccc--cc---cCC-----CCeEEEeCC-----C
Confidence 663 3579999999999999999999999999 9999999999988531 11 111 469999887 4
Q ss_pred CCCCC-CCCccCcchhhHHHHHHHH-HhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHH
Q 036900 79 GLPPN-TENTENLSFDLIINFFASS-QSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGY 156 (247)
Q Consensus 79 ~lp~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 156 (247)
|+|++ .++. . ...++..+ +.+.+.++++++++..+.+.+++|||+|+|++|+.++|+++|||+|+||+++|+
T Consensus 65 glp~~~~~~~---~---~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~ 138 (451)
T PLN02410 65 SLPESDFKNL---G---PIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSAT 138 (451)
T ss_pred CCCccccccc---C---HHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHH
Confidence 77764 2221 1 11344433 567788999888764322356799999999999999999999999999999999
Q ss_pred HHHHHHHhhhcC------CCCCCCC-CccccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEccc
Q 036900 157 GTLAYISLWLNL------PHRKTNS-DEFTLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTA 229 (247)
Q Consensus 157 ~~~~~~~~~~~~------~~~~~~~-~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf 229 (247)
+++++++++.+. +...... +.+.+||+|+ ++.+|+|...... .......+.. ...+++|+|||+|||
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~--~~~~~~~~~~-~~~~~~~~~vlvNTf 212 (451)
T PLN02410 139 AFVCRSVFDKLYANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWAS--LESIMELYRN-TVDKRTASSVIINTA 212 (451)
T ss_pred HHHHHHHHHHHHhccCCCCccccccCccccCCCCCC---CChHHCcchhcCC--cHHHHHHHHH-HhhcccCCEEEEeCh
Confidence 999988765432 2122111 2246889887 8999999764321 2223333333 335678999999999
Q ss_pred chhcHhHHHHHHHhcCCC
Q 036900 230 EEIEPGALQWLRNYTKLP 247 (247)
Q Consensus 230 ~eLE~~~~~~l~~~~~~~ 247 (247)
+|||+++++++++.+|+|
T Consensus 213 ~eLE~~~~~~l~~~~~~~ 230 (451)
T PLN02410 213 SCLESSSLSRLQQQLQIP 230 (451)
T ss_pred HHhhHHHHHHHHhccCCC
Confidence 999999999999877654
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=5.7e-40 Score=295.78 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=166.2
Q ss_pred CCCCCceEEEeccCCcCChHHHHHHHHHHH-hcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCC
Q 036900 1 MGSENEHIVMLPFMAHGHLIPFLALARQIH-QSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHG 79 (247)
Q Consensus 1 m~~~~~hvv~~p~p~~GHi~P~l~La~~La-~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~ 79 (247)
|-..++|||++|||+|||++||++|||+|+ + +|++|||++|+.|..++..... .. ++|+++.+|+|. .++
T Consensus 1 ~~~~~pHVvl~P~paqGHi~P~l~LAk~La~~-~g~~vT~v~t~~n~~~~~~~~~--~~-----~~i~~~~lp~p~-~~g 71 (481)
T PLN02992 1 MHITKPHAAMFSSPGMGHVIPVIELGKRLSAN-HGFHVTVFVLETDAASAQSKFL--NS-----TGVDIVGLPSPD-ISG 71 (481)
T ss_pred CCCCCcEEEEeCCcccchHHHHHHHHHHHHhC-CCcEEEEEeCCCchhhhhhccc--cC-----CCceEEECCCcc-ccC
Confidence 556789999999999999999999999998 6 8999999999999776543211 01 369999999763 246
Q ss_pred CCCCCCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHH
Q 036900 80 LPPNTENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTL 159 (247)
Q Consensus 80 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~ 159 (247)
+|+... . ....+..+.+.+.+.++++++++. .+++|||+|+|++|+.+||+++|||+|+||+++|++++
T Consensus 72 lp~~~~---~----~~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~ 140 (481)
T PLN02992 72 LVDPSA---H----VVTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLG 140 (481)
T ss_pred CCCCCc---c----HHHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHH
Confidence 652211 1 112344445667788999988752 36899999999999999999999999999999999999
Q ss_pred HHHHhhhcCCC-CCC--C-CCccccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcccchhcHh
Q 036900 160 AYISLWLNLPH-RKT--N-SDEFTLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTAEEIEPG 235 (247)
Q Consensus 160 ~~~~~~~~~~~-~~~--~-~~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf~eLE~~ 235 (247)
++++++.+... ... . .+.+.+||+|+ ++..|+|..+.+. .+..+..+.+..+++.+|+|||||||+|||++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 215 (481)
T PLN02992 141 VSIYYPTLDKDIKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEPK 215 (481)
T ss_pred HHHhhhhhccccccccccCCCCcccCCCCc---cCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHH
Confidence 88877642111 110 0 11256888887 9999999766542 33456777788888899999999999999999
Q ss_pred HHHHHHH
Q 036900 236 ALQWLRN 242 (247)
Q Consensus 236 ~~~~l~~ 242 (247)
+++++++
T Consensus 216 ~l~~l~~ 222 (481)
T PLN02992 216 SLKSLQD 222 (481)
T ss_pred HHHHHhh
Confidence 9999975
No 8
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=9e-40 Score=292.26 Aligned_cols=222 Identities=19% Similarity=0.331 Sum_probs=164.4
Q ss_pred CCCCCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCC
Q 036900 1 MGSENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGL 80 (247)
Q Consensus 1 m~~~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~l 80 (247)
|++.++|||++|||+|||+|||++|||+|++ ||++|||++|+.|..++.+. . ... ..-.++++.+|.+ +|+
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~-~g~~vT~~tt~~~~~~~~~~-~-~~~---~~~~v~~~~~p~~---~gl 71 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAE-KGHTVTFLLPKKALKQLEHL-N-LFP---HNIVFRSVTVPHV---DGL 71 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhccc-c-cCC---CCceEEEEECCCc---CCC
Confidence 8889999999999999999999999999999 99999999999987766542 1 001 0012555555543 588
Q ss_pred CCCCCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHHH
Q 036900 81 PPNTENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTLA 160 (247)
Q Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~ 160 (247)
|++.++.++.+......+..+++.+.++++++|+++ +++|||+|+ ++|+.+||+++|||+|+||+++|+++++
T Consensus 72 p~g~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~ 144 (453)
T PLN02764 72 PVGTETVSEIPVTSADLLMSAMDLTRDQVEVVVRAV------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIAS 144 (453)
T ss_pred CCcccccccCChhHHHHHHHHHHHhHHHHHHHHHhC------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHH
Confidence 887665544443223456666777889999998764 479999995 8999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCccccCCCCc-Ccccchhhhhhhhhc-c-CCCChhHHhHHHHHHhhccceEEEEcccchhcHhHH
Q 036900 161 YISLWLNLPHRKTNSDEFTLPGFPE-RCHFHITQLHKYLRM-A-DGTDDWSKFMQPQISQSLKSYGMLCNTAEEIEPGAL 237 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~ipg~p~-~~~l~~~dlp~~~~~-~-~~~~~~~~~~~~~~~~~~~a~gilvNTf~eLE~~~~ 237 (247)
+++ +.... ...+||+|. .+.++.+|+|++... . ...+.+..++.+..+.+.+++|||+|||+|||++++
T Consensus 145 ~~~-----~~~~~---~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~ 216 (453)
T PLN02764 145 MLV-----PGGEL---GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFC 216 (453)
T ss_pred Hhc-----ccccC---CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHH
Confidence 863 11111 123588884 234888999975321 1 111234445555557788999999999999999999
Q ss_pred HHHHHhcCC
Q 036900 238 QWLRNYTKL 246 (247)
Q Consensus 238 ~~l~~~~~~ 246 (247)
+++++..++
T Consensus 217 ~~~~~~~~~ 225 (453)
T PLN02764 217 DYIEKHCRK 225 (453)
T ss_pred HHHHhhcCC
Confidence 999875443
No 9
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=9.3e-40 Score=293.10 Aligned_cols=213 Identities=20% Similarity=0.301 Sum_probs=159.0
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcch-HHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCC
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNI-QYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPN 83 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~-~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~ 83 (247)
++|||++|||+|||+|||++|||+|++++|++|||++|+.|. .++.+.. ... ++|+|+.++ +|+|++
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~--~~~-----~~i~~~~i~-----dglp~g 70 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH--NNV-----ENLSFLTFS-----DGFDDG 70 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC--CCC-----CCEEEEEcC-----CCCCCc
Confidence 469999999999999999999999995369999999998752 2222111 111 469999886 588876
Q ss_pred CCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHHHHHH
Q 036900 84 TENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTLAYIS 163 (247)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 163 (247)
.+...+. ....+....+.+.++++++++++.. .+.|++|||+|+|++|+.+||+++|||+|+||+++|++++++++
T Consensus 71 ~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~l~~-~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~ 146 (455)
T PLN02152 71 VISNTDD---VQNRLVNFERNGDKALSDFIEANLN-GDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYN 146 (455)
T ss_pred ccccccc---HHHHHHHHHHhccHHHHHHHHHhhc-cCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 4321111 1123444456778899999987642 12467999999999999999999999999999999999999987
Q ss_pred hhhcCCCCCCCCCccccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhcc--ceEEEEcccchhcHhHHHHHH
Q 036900 164 LWLNLPHRKTNSDEFTLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLK--SYGMLCNTAEEIEPGALQWLR 241 (247)
Q Consensus 164 ~~~~~~~~~~~~~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~--a~gilvNTf~eLE~~~~~~l~ 241 (247)
++... ...+.+||+|+ ++.+|||+++.....++.+...+.+..+.+.+ ++|||+|||+|||++++++++
T Consensus 147 ~~~~~------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 217 (455)
T PLN02152 147 YSTGN------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIP 217 (455)
T ss_pred hhccC------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhh
Confidence 75321 12356899987 99999999875433233445666666665543 679999999999999999996
Q ss_pred H
Q 036900 242 N 242 (247)
Q Consensus 242 ~ 242 (247)
+
T Consensus 218 ~ 218 (455)
T PLN02152 218 N 218 (455)
T ss_pred c
Confidence 4
No 10
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-39 Score=292.31 Aligned_cols=215 Identities=17% Similarity=0.252 Sum_probs=164.4
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCC
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPN 83 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~ 83 (247)
.++|||++|||+|||+|||++|||+|++ +|++|||+||+.|..++.+.... . ++|+|+.+|+ +++++
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~~~~~~~~--~-----~~i~~v~lp~-----g~~~~ 71 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLS-RGFEPVVITPEFIHRRISATLDP--K-----LGITFMSISD-----GQDDD 71 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHh-CCCEEEEEeCcchhhhhhhccCC--C-----CCEEEEECCC-----CCCCC
Confidence 4579999999999999999999999999 99999999999988776654321 1 4699998873 44432
Q ss_pred CCCccCcchhhHHHHHHHHH-hchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHHHHH
Q 036900 84 TENTENLSFDLIINFFASSQ-SLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTLAYI 162 (247)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~ 162 (247)
. +. .+..+..++. .+.+.++++++++.. ..|++|||+|+|++|+.++|+++|||+|+||+++++++++++
T Consensus 72 ~------~~-~~~~l~~a~~~~~~~~l~~ll~~l~~--~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~ 142 (448)
T PLN02562 72 P------PR-DFFSIENSMENTMPPQLERLLHKLDE--DGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQ 142 (448)
T ss_pred c------cc-cHHHHHHHHHHhchHHHHHHHHHhcC--CCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHH
Confidence 1 11 1234555664 678999999988642 135699999999999999999999999999999999999988
Q ss_pred HhhhcCCCC---CC--CC--Ccc-ccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcccchhcH
Q 036900 163 SLWLNLPHR---KT--NS--DEF-TLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTAEEIEP 234 (247)
Q Consensus 163 ~~~~~~~~~---~~--~~--~~~-~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf~eLE~ 234 (247)
+++.+.... .. .. +.+ .+||+|. ++.+|+|+++.........++.+.+..+...+++|||+|||+|||+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~ 219 (448)
T PLN02562 143 AIPELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEY 219 (448)
T ss_pred HHHHHhhccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCH
Confidence 776432110 00 01 112 5788887 9999999877543223344677778788888999999999999999
Q ss_pred hHHHHHHHh
Q 036900 235 GALQWLRNY 243 (247)
Q Consensus 235 ~~~~~l~~~ 243 (247)
++++++++.
T Consensus 220 ~~~~~~~~~ 228 (448)
T PLN02562 220 DDVKNHQAS 228 (448)
T ss_pred HHHHHHHhh
Confidence 999988753
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.1e-39 Score=291.81 Aligned_cols=215 Identities=17% Similarity=0.269 Sum_probs=160.1
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCC----CeEEEEeCCcchH----HhhhhcCCCCCCCCCccceeEEecCCCC
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTG----FKITIANTPLNIQ----YLQNTISCNNPNSSEKFNINLVELPFCS 75 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G----~~VT~~~t~~~~~----~~~~~~~~~~~~~~~~~~i~~~~lp~~~ 75 (247)
.++|||++|||+|||+|||++|||+|++ || +.|||++|+.+.. ++......... ...+|+|+.+|++
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~-~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~lp~~- 76 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLA-SSGGGALSLTVLVMPPPTPESASEVAAHVRREAA---SGLDIRFHHLPAV- 76 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHh-CCCCCcEEEEEEEcCCCccchhHHHHHHHhhccc---CCCCEEEEECCCC-
Confidence 4679999999999999999999999999 76 8999999987632 34433221000 0025999999853
Q ss_pred CCCCCCCCCCCccCcchhhHHHHHH-HHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEecccc
Q 036900 76 SDHGLPPNTENTENLSFDLIINFFA-SSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGG 154 (247)
Q Consensus 76 ~~~~lp~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 154 (247)
.+|++.+. ...++. ..+.+.+.++++++++. .+++|||+|+|++|+.+||+++|||+++|||++
T Consensus 77 ---~~p~~~e~--------~~~~~~~~~~~~~~~l~~~L~~l~----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~s 141 (480)
T PLN00164 77 ---EPPTDAAG--------VEEFISRYIQLHAPHVRAAIAGLS----CPVAALVVDFFCTPLLDVARELAVPAYVYFTST 141 (480)
T ss_pred ---CCCCcccc--------HHHHHHHHHHhhhHHHHHHHHhcC----CCceEEEECCcchhHHHHHHHhCCCEEEEECcc
Confidence 23444321 112333 44677888999888762 367999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCC---CC-CCccccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcccc
Q 036900 155 GYGTLAYISLWLNLPHRK---TN-SDEFTLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTAE 230 (247)
Q Consensus 155 a~~~~~~~~~~~~~~~~~---~~-~~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf~ 230 (247)
|++++++++++....... .. .+.+.+||+|+ ++.+|||.++... .+..++++....+++.+|+|||+|||+
T Consensus 142 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~ 216 (480)
T PLN00164 142 AAMLALMLRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDK--KSPNYAWFVYHGRRFMEAAGIIVNTAA 216 (480)
T ss_pred HHHHHHHhhhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCC--CcHHHHHHHHHHHhhhhcCEEEEechH
Confidence 999999998865321100 00 12256899987 9999999876532 223455666667788899999999999
Q ss_pred hhcHhHHHHHHHh
Q 036900 231 EIEPGALQWLRNY 243 (247)
Q Consensus 231 eLE~~~~~~l~~~ 243 (247)
|||+++++++++.
T Consensus 217 eLE~~~~~~~~~~ 229 (480)
T PLN00164 217 ELEPGVLAAIADG 229 (480)
T ss_pred HhhHHHHHHHHhc
Confidence 9999999999875
No 12
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=7.8e-39 Score=287.14 Aligned_cols=217 Identities=18% Similarity=0.263 Sum_probs=162.9
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhh--hhcCCCCCCCCCccceeEEecCCCCCCCCC-C
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQ--NTISCNNPNSSEKFNINLVELPFCSSDHGL-P 81 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~--~~~~~~~~~~~~~~~i~~~~lp~~~~~~~l-p 81 (247)
++|||++|||+|||+|||++|||+|++++|+.|||++|..+..++. ........ .++|+++.+|++.. +++ +
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~----~~~i~~~~lp~~~~-~~l~~ 77 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAA----RTTCQITEIPSVDV-DNLVE 77 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccC----CCceEEEECCCCcc-ccCCC
Confidence 5799999999999999999999999982399999999988775542 11111101 02699999996521 244 2
Q ss_pred CCCCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCc-eEEeccccHHHHHH
Q 036900 82 PNTENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTT-NVTFSTGGGYGTLA 160 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP-~v~f~~~~a~~~~~ 160 (247)
++ . +....++.+.+.+.++++++++++. .+++|||+|+|++|+.+||+++||| +++|++++|+.+++
T Consensus 78 ~~---~-----~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~ 145 (470)
T PLN03015 78 PD---A-----TIFTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAV 145 (470)
T ss_pred CC---c-----cHHHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHH
Confidence 22 1 1123566667788899999998764 3679999999999999999999999 69999999999989
Q ss_pred HHHhhhcCCC-CC--CC-CCccccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcccchhcHhH
Q 036900 161 YISLWLNLPH-RK--TN-SDEFTLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTAEEIEPGA 236 (247)
Q Consensus 161 ~~~~~~~~~~-~~--~~-~~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf~eLE~~~ 236 (247)
+++++..... .. .. .+.+.+||+|+ ++.+|+|..+++. ++..+..+.+..++..+|+|||+|||+|||+++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~ 220 (470)
T PLN03015 146 MVYLPVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDR--SDQQYKECVRSGLEVPMSDGVLVNTWEELQGNT 220 (470)
T ss_pred HHhhhhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 8887643211 11 01 12256899987 9999999877643 233344555677788999999999999999999
Q ss_pred HHHHHHh
Q 036900 237 LQWLRNY 243 (247)
Q Consensus 237 ~~~l~~~ 243 (247)
++++++.
T Consensus 221 ~~~l~~~ 227 (470)
T PLN03015 221 LAALRED 227 (470)
T ss_pred HHHHHhh
Confidence 9999875
No 13
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.4e-38 Score=285.18 Aligned_cols=222 Identities=17% Similarity=0.166 Sum_probs=159.5
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCC----CeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCC
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTG----FKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGL 80 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G----~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~l 80 (247)
+.|||++|||+|||+|||++|||+|++ +| ++||++++..|...+.+....... ..++|+|+.+|++ .+.
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~-~g~~~~vti~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~lp~~---~~~ 75 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILS-KNPSLSIHIILVPPPYQPESTATYISSVSS---SFPSITFHHLPAV---TPY 75 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHh-CCCceEEEEEEecCcchhhhhhhhhccccC---CCCCeEEEEcCCC---CCC
Confidence 459999999999999999999999999 88 555666776654443322111000 0146999999854 122
Q ss_pred CCCCCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHHH
Q 036900 81 PPNTENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTLA 160 (247)
Q Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~ 160 (247)
+++... ... ....+..+.+.+.++++++++++.. +.|++|||+|+|++|+.+||+++|||+|+||+++|+++++
T Consensus 76 ~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~l~~l~~--~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~ 149 (451)
T PLN03004 76 SSSSTS--RHH--HESLLLEILCFSNPSVHRTLFSLSR--NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAF 149 (451)
T ss_pred CCcccc--ccC--HHHHHHHHHHhhhHHHHHHHHhcCC--CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHH
Confidence 222111 111 1123444556777889999887631 2456999999999999999999999999999999999999
Q ss_pred HHHhhhcC-C--CCCCCC-CccccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcccchhcHhH
Q 036900 161 YISLWLNL-P--HRKTNS-DEFTLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTAEEIEPGA 236 (247)
Q Consensus 161 ~~~~~~~~-~--~~~~~~-~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf~eLE~~~ 236 (247)
+++++... + ...... ..+.+||+|. ++.+|||+++... ++..++.+.+..+.+.+++|||+|||+|||+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~ 224 (451)
T PLN03004 150 SFYLPTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLER--DDEVYDVFIMFGKQLSKSSGIIINTFDALENRA 224 (451)
T ss_pred HHHHHhccccccccccccCCeecCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHHhhcccCeeeeeeHHHhHHHH
Confidence 99876421 1 111011 1256899988 9999999987643 234567777788888999999999999999999
Q ss_pred HHHHHHhc
Q 036900 237 LQWLRNYT 244 (247)
Q Consensus 237 ~~~l~~~~ 244 (247)
++++++.+
T Consensus 225 l~~l~~~~ 232 (451)
T PLN03004 225 IKAITEEL 232 (451)
T ss_pred HHHHHhcC
Confidence 99998754
No 14
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.4e-38 Score=282.32 Aligned_cols=215 Identities=19% Similarity=0.261 Sum_probs=157.3
Q ss_pred CCCCCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCC
Q 036900 1 MGSENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGL 80 (247)
Q Consensus 1 m~~~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~l 80 (247)
|+ +++|||++|||+|||+|||++|||+|++ +|++|||++|+.++.++.+... .. ++|+|+.+++|. .+++
T Consensus 1 ~~-~~~HVvlvPfpaqGHi~PmL~LAk~Las-~G~~VT~vtt~~~~~~i~~~~~--~~-----~~i~~~~i~lP~-~dGL 70 (446)
T PLN00414 1 MG-SKFHAFMYPWFGFGHMIPYLHLANKLAE-KGHRVTFFLPKKAHKQLQPLNL--FP-----DSIVFEPLTLPP-VDGL 70 (446)
T ss_pred CC-CCCEEEEecCcccchHHHHHHHHHHHHh-CCCEEEEEeCCchhhhhccccc--CC-----CceEEEEecCCC-cCCC
Confidence 44 4689999999999999999999999999 9999999999988776654311 11 358997777653 3688
Q ss_pred CCCCCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHHH
Q 036900 81 PPNTENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTLA 160 (247)
Q Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~ 160 (247)
|++.++..+.+......+..+.+.+.+.++++++.. +++|||+|+ ++|+.+||+++|||+|+||+++|+++++
T Consensus 71 P~g~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~ 143 (446)
T PLN00414 71 PFGAETASDLPNSTKKPIFDAMDLLRDQIEAKVRAL------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAM 143 (446)
T ss_pred CCcccccccchhhHHHHHHHHHHHHHHHHHHHHhcC------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHH
Confidence 887554433332112234455566777787777542 579999995 8999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCccccCCCCc-Ccccchhhhh--hhhhccCCCChhHHhHHHHHHhhccceEEEEcccchhcHhHH
Q 036900 161 YISLWLNLPHRKTNSDEFTLPGFPE-RCHFHITQLH--KYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTAEEIEPGAL 237 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~ipg~p~-~~~l~~~dlp--~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf~eLE~~~~ 237 (247)
+++... . ....+||+|. .+.++..|++ .++. . ....+.+..+.+.+|+|||+|||+|||++++
T Consensus 144 ~~~~~~-----~---~~~~~pg~p~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 209 (446)
T PLN00414 144 VLAPRA-----E---LGFPPPDYPLSKVALRGHDANVCSLFA-N-----SHELFGLITKGLKNCDVVSIRTCVELEGNLC 209 (446)
T ss_pred HhCcHh-----h---cCCCCCCCCCCcCcCchhhcccchhhc-c-----cHHHHHHHHHhhccCCEEEEechHHHHHHHH
Confidence 876211 1 1134688875 2235555543 4332 1 1234556667788899999999999999999
Q ss_pred HHHHHhcCC
Q 036900 238 QWLRNYTKL 246 (247)
Q Consensus 238 ~~l~~~~~~ 246 (247)
+++++.+++
T Consensus 210 ~~~~~~~~~ 218 (446)
T PLN00414 210 DFIERQCQR 218 (446)
T ss_pred HHHHHhcCC
Confidence 999886554
No 15
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=7.7e-38 Score=280.47 Aligned_cols=215 Identities=20% Similarity=0.246 Sum_probs=156.2
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCC
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPN 83 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~ 83 (247)
.++|||++|||+|||+|||++|||+|++ ||++|||+||+.+..++.+.. ... .+++++.+|+++ .+++|++
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~-~G~~VT~vtt~~~~~~i~~~~--a~~-----~~i~~~~l~~p~-~dgLp~g 73 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAE-KGHRVTFLLPKKAQKQLEHHN--LFP-----DSIVFHPLTIPP-VNGLPAG 73 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHh-CCCEEEEEeccchhhhhhccc--CCC-----CceEEEEeCCCC-ccCCCCC
Confidence 4689999999999999999999999999 999999999998877665421 111 357888887652 2588887
Q ss_pred CCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHHHHHH
Q 036900 84 TENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTLAYIS 163 (247)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~ 163 (247)
.++.+.........+....+.+.+.++++++++ +++|||+| +++|+.+||+++|||+++||+++|++++ +++
T Consensus 74 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~ 145 (442)
T PLN02208 74 AETTSDIPISMDNLLSEALDLTRDQVEAAVRAL------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTH 145 (442)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHhhC------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHc
Confidence 553332221111223444566778888888653 57999999 5899999999999999999999998765 554
Q ss_pred hhhcCCCCCCCCCccccCCCCc-CcccchhhhhhhhhccCCCChhHHhHHH-HHHhhccceEEEEcccchhcHhHHHHHH
Q 036900 164 LWLNLPHRKTNSDEFTLPGFPE-RCHFHITQLHKYLRMADGTDDWSKFMQP-QISQSLKSYGMLCNTAEEIEPGALQWLR 241 (247)
Q Consensus 164 ~~~~~~~~~~~~~~~~ipg~p~-~~~l~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~a~gilvNTf~eLE~~~~~~l~ 241 (247)
++. .. ....+||+|. .+.++.+|+|.+ . ..+..++.+.+ ..+...+++|||+|||+|||++++++++
T Consensus 146 ~~~----~~---~~~~~pglp~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~ 214 (442)
T PLN02208 146 VPG----GK---LGVPPPGYPSSKVLFRENDAHAL--A--TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYIS 214 (442)
T ss_pred cCc----cc---cCCCCCCCCCcccccCHHHcCcc--c--ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHH
Confidence 431 11 1134689986 245889999964 1 12233444443 3356778999999999999999999998
Q ss_pred HhcCC
Q 036900 242 NYTKL 246 (247)
Q Consensus 242 ~~~~~ 246 (247)
+.+++
T Consensus 215 ~~~~~ 219 (442)
T PLN02208 215 RQYHK 219 (442)
T ss_pred hhcCC
Confidence 76553
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=6.9e-37 Score=278.10 Aligned_cols=232 Identities=30% Similarity=0.547 Sum_probs=165.6
Q ss_pred CCCCCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCC--CCCCCCCccceeEEecCCCCCCC
Q 036900 1 MGSENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISC--NNPNSSEKFNINLVELPFCSSDH 78 (247)
Q Consensus 1 m~~~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~--~~~~~~~~~~i~~~~lp~~~~~~ 78 (247)
|.++++|||++|||+|||+|||++|||+|++ ||++|||++|+.+..++++.... +.. ...++++..+++|..++
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~-rG~~VT~vtt~~~~~~i~~~~a~~~~~~---~~~~~~~~~~~~p~~~~ 76 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSS-RGAKSTILTTPLNAKIFEKPIEAFKNLN---PGLEIDIQIFNFPCVEL 76 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHh-CCCEEEEEECCCchhhhhhhhhhhcccC---CCCcceEEEeeCCCCcC
Confidence 7778899999999999999999999999999 99999999999998766643221 001 00124566666553334
Q ss_pred CCCCCCCCccCcc------h-hhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEec
Q 036900 79 GLPPNTENTENLS------F-DLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFS 151 (247)
Q Consensus 79 ~lp~~~~~~~~~~------~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~ 151 (247)
++|+|.++....+ . .....+....+.+.+.+++++++ .+++|||+|.+++|+.+||+++|||+|+||
T Consensus 77 glP~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~ 150 (482)
T PLN03007 77 GLPEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET------TRPDCLVADMFFPWATEAAEKFGVPRLVFH 150 (482)
T ss_pred CCCCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc------CCCCEEEECCcchhHHHHHHHhCCCeEEee
Confidence 7887754432111 1 11223333445556666666653 258999999999999999999999999999
Q ss_pred cccHHHHHHHHHhhhcCCCCCCC--CCccccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEccc
Q 036900 152 TGGGYGTLAYISLWLNLPHRKTN--SDEFTLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTA 229 (247)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~--~~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf 229 (247)
+++|+++++++++....+..... .+.+.+||+|+.+.++..|+|.. +....+.+++....+...++++|++|||
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~ 226 (482)
T PLN03007 151 GTGYFSLCASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSF 226 (482)
T ss_pred cccHHHHHHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECH
Confidence 99999999888765443322211 12256899987666888888852 2223345566566667889999999999
Q ss_pred chhcHhHHHHHHHhcCC
Q 036900 230 EEIEPGALQWLRNYTKL 246 (247)
Q Consensus 230 ~eLE~~~~~~l~~~~~~ 246 (247)
+|||+++++++++..++
T Consensus 227 ~~le~~~~~~~~~~~~~ 243 (482)
T PLN03007 227 YELESAYADFYKSFVAK 243 (482)
T ss_pred HHHHHHHHHHHHhccCC
Confidence 99999999999875543
No 17
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.9e-37 Score=276.78 Aligned_cols=222 Identities=18% Similarity=0.202 Sum_probs=153.4
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCCC---eEEEEeCCcchH-HhhhhcCCCCCCCCCccceeEEecCCCCCCCC
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTGF---KITIANTPLNIQ-YLQNTISCNNPNSSEKFNINLVELPFCSSDHG 79 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~---~VT~~~t~~~~~-~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~ 79 (247)
+++|||++|||+|||+|||++|||+|++ ||. .||+++|..+.. ..+........ ..++|+|+.||++ .+
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~-~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~---~~~~i~~~~lp~~---~~ 74 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLIN-LDRRIHTITILYWSLPFAPQADAFLKSLIA---SEPRIRLVTLPEV---QD 74 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHh-CCCCeEEEEEEECCCCcchhhhHHHhhccc---CCCCeEEEECCCC---CC
Confidence 5789999999999999999999999999 883 577777665432 11111111000 0146999999964 22
Q ss_pred CCCCCCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhc---CCC-CCcEEEecccccchHHHHHHhCCceEEeccccH
Q 036900 80 LPPNTENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEK---EGK-PPICIITDIFFGWAVDVAKSAGTTNVTFSTGGG 155 (247)
Q Consensus 80 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---~~~-~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 155 (247)
|++.+...... ...+....+.+.+.+++.++++..+ ++. |++|||+|+|++|+.+||+++|||+|+||+++|
T Consensus 75 -p~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A 150 (475)
T PLN02167 75 -PPPMELFVKAS---EAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNA 150 (475)
T ss_pred -Cccccccccch---HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccH
Confidence 22211101111 1234444456667777777665321 122 569999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC-CCC-C--C-C-CCccccCCCC-cCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcc
Q 036900 156 YGTLAYISLWLNL-PHR-K--T-N-SDEFTLPGFP-ERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNT 228 (247)
Q Consensus 156 ~~~~~~~~~~~~~-~~~-~--~-~-~~~~~ipg~p-~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNT 228 (247)
++++++++++... ... + . . .+.+.+||+| + ++..|+|..+++. ..++.+.+..++..+++|||+||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~---l~~~dlp~~~~~~----~~~~~~~~~~~~~~~a~~vlvNT 223 (475)
T PLN02167 151 GFLGMMKYLPERHRKTASEFDLSSGEEELPIPGFVNS---VPTKVLPPGLFMK----ESYEAWVEIAERFPEAKGILVNS 223 (475)
T ss_pred HHHHHHHHHHHhccccccccccCCCCCeeECCCCCCC---CChhhCchhhhCc----chHHHHHHHHHhhcccCEeeecc
Confidence 9999998876421 111 1 1 1 1225689984 4 8999999866532 12456667778889999999999
Q ss_pred cchhcHhHHHHHHHh
Q 036900 229 AEEIEPGALQWLRNY 243 (247)
Q Consensus 229 f~eLE~~~~~~l~~~ 243 (247)
|+|||+++++++++.
T Consensus 224 f~eLE~~~~~~l~~~ 238 (475)
T PLN02167 224 FTELEPNAFDYFSRL 238 (475)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999764
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2e-36 Score=273.74 Aligned_cols=214 Identities=19% Similarity=0.280 Sum_probs=163.6
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcC--CCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCC
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQST--GFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLP 81 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~--G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp 81 (247)
.++|||++|||+|||+|||++||++|++ + |+.|||++|+.+..++.+... . ++|+|+.+| +++|
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~-~~~G~~VT~~~t~~~~~~i~~~~~---~-----~gi~fv~lp-----~~~p 74 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLAS-RKPDILITFVVTEEWLGLIGSDPK---P-----DNIRFATIP-----NVIP 74 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHc-CCCCcEEEEEeCCchHhHhhccCC---C-----CCEEEEECC-----CCCC
Confidence 4689999999999999999999999999 8 999999999999877765321 1 479999887 3455
Q ss_pred CCCCCccCcchhhHHHHHHHH-HhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHHH
Q 036900 82 PNTENTENLSFDLIINFFASS-QSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTLA 160 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~ 160 (247)
++.+... +...++..+ +.+.+.++++++++. .+++|||+|++++|+.++|+++|||+|.||+++|+++++
T Consensus 75 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~ 145 (459)
T PLN02448 75 SELVRAA-----DFPGFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSV 145 (459)
T ss_pred Ccccccc-----CHHHHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHH
Confidence 4432111 122334443 467788899888763 368999999999999999999999999999999999999
Q ss_pred HHHhhhcCC-----CCCCC-CCc-c-ccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcccchh
Q 036900 161 YISLWLNLP-----HRKTN-SDE-F-TLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNTAEEI 232 (247)
Q Consensus 161 ~~~~~~~~~-----~~~~~-~~~-~-~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNTf~eL 232 (247)
+++++...+ ..... .++ + .+||+|. ++..|+|.++... ....++.+.+...+..++++||+|||+||
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eL 220 (459)
T PLN02448 146 FYHFDLLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYEL 220 (459)
T ss_pred HHHhhhhhhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHh
Confidence 888754321 11110 112 2 3777776 9999999876532 23446667777778889999999999999
Q ss_pred cHhHHHHHHHhcC
Q 036900 233 EPGALQWLRNYTK 245 (247)
Q Consensus 233 E~~~~~~l~~~~~ 245 (247)
|+++++++++.++
T Consensus 221 E~~~~~~l~~~~~ 233 (459)
T PLN02448 221 EAQAIDALKSKFP 233 (459)
T ss_pred hHHHHHHHHhhcC
Confidence 9999999987654
No 19
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.4e-36 Score=275.91 Aligned_cols=214 Identities=20% Similarity=0.264 Sum_probs=153.4
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCC--CeEEEEeCCcchHHhh---hhcCCCCCCCCCccceeEEecCCCCCCCC
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTG--FKITIANTPLNIQYLQ---NTISCNNPNSSEKFNINLVELPFCSSDHG 79 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G--~~VT~~~t~~~~~~~~---~~~~~~~~~~~~~~~i~~~~lp~~~~~~~ 79 (247)
|.|||++|||+|||++||++|||+|++ || ++|||++|+.|+.++. +....... ...++|+|+.+|++
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~-~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~lp~~----- 73 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVD-SDDRLSITVIIIPSRSGDDASSSAYIASLSA--SSEDRLRYEVISAG----- 73 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHh-CCCCEEEEEEeCCCccchhhhhhhhhhhccc--CCCCCeEEEEcCCC-----
Confidence 579999999999999999999999999 88 9999999998865431 11110000 00146999999854
Q ss_pred CCCCCCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhc----CCCCCcEEEecccccchHHHHHHhCCceEEeccccH
Q 036900 80 LPPNTENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEK----EGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGG 155 (247)
Q Consensus 80 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~----~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 155 (247)
.++... .. .+...++.+.+.+++.++++..+ +++|++|||+|+|++|+.+||+++|||+|+|||++|
T Consensus 74 ~~~~~~----~~-----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa 144 (481)
T PLN02554 74 DQPTTE----DP-----TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNA 144 (481)
T ss_pred CCCccc----ch-----HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcH
Confidence 121100 01 22233344455555555554221 123459999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCC-----CCC-CC-CccccCCCC-cCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEc
Q 036900 156 YGTLAYISLWLNLPH-----RKT-NS-DEFTLPGFP-ERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCN 227 (247)
Q Consensus 156 ~~~~~~~~~~~~~~~-----~~~-~~-~~~~ipg~p-~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvN 227 (247)
++++++++++..... .+. +. +.+.+||++ + ++.+|||+.+.+ ..++..+.+..+++.+++|||+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~p---l~~~dlp~~~~~----~~~~~~~~~~~~~~~~~~gvlvN 217 (481)
T PLN02554 145 TFLGLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRP---YPVKCLPSVLLS----KEWLPLFLAQARRFREMKGILVN 217 (481)
T ss_pred HHHHHHHhhhhhccccccCccccCCCCceeECCCCCCC---CCHHHCCCcccC----HHHHHHHHHHHHhcccCCEEEEe
Confidence 999999988653211 011 11 125688884 4 899999987642 23566777888889999999999
Q ss_pred ccchhcHhHHHHHHH
Q 036900 228 TAEEIEPGALQWLRN 242 (247)
Q Consensus 228 Tf~eLE~~~~~~l~~ 242 (247)
||+|||+++++++++
T Consensus 218 t~~eLe~~~~~~l~~ 232 (481)
T PLN02554 218 TVAELEPQALKFFSG 232 (481)
T ss_pred chHHHhHHHHHHHHh
Confidence 999999999999986
No 20
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.3e-36 Score=271.89 Aligned_cols=217 Identities=21% Similarity=0.266 Sum_probs=153.5
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCC--CeEEEEeCCcch-HHhhhhcCC--CCCCCCCccceeEEecCCCCCCC
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTG--FKITIANTPLNI-QYLQNTISC--NNPNSSEKFNINLVELPFCSSDH 78 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G--~~VT~~~t~~~~-~~~~~~~~~--~~~~~~~~~~i~~~~lp~~~~~~ 78 (247)
+++|||++|||+|||+|||++|||+|++ +| +.|||++|+.+. ..+.....+ ... ++|+|+.+|+. +
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~-~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~-----~~i~~~~lp~~---~ 72 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIE-QDDRIRITILLMKLQGQSHLDTYVKSIASSQ-----PFVRFIDVPEL---E 72 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHh-CCCCeEEEEEEcCCCcchhhHHhhhhccCCC-----CCeEEEEeCCC---C
Confidence 4579999999999999999999999999 88 999999999876 333322221 111 46999999942 1
Q ss_pred CCCCCCCCccCcchhhHHHHHHHHHhchH----HHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEecccc
Q 036900 79 GLPPNTENTENLSFDLIINFFASSQSLKT----PLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGG 154 (247)
Q Consensus 79 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 154 (247)
..++.. ...+ ....++.+.+.+.+ .+++++++.. .++.|++|||+|+|++|+.+||+++|||+|+||+++
T Consensus 73 ~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~ 146 (468)
T PLN02207 73 EKPTLG-GTQS----VEAYVYDVIEKNIPLVRNIVMDILSSLA-LDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTN 146 (468)
T ss_pred CCCccc-cccC----HHHHHHHHHHhcchhHHHHHHHHHHHhc-cCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECcc
Confidence 122211 1111 11234445555534 4555554431 112345999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCC-CCCC---CCCc-cccCCC-CcCcccchhhhhhhhhccCCCChhHHhHHHHHHhhccceEEEEcc
Q 036900 155 GYGTLAYISLWLNLP-HRKT---NSDE-FTLPGF-PERCHFHITQLHKYLRMADGTDDWSKFMQPQISQSLKSYGMLCNT 228 (247)
Q Consensus 155 a~~~~~~~~~~~~~~-~~~~---~~~~-~~ipg~-p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~gilvNT 228 (247)
|++++++++++.... .... ..+. +.+||+ |+ ++.+|||+++... +. +..+.+..+.++++++||+||
T Consensus 147 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~---~~-~~~~~~~~~~~~~~~~vlvNt 219 (468)
T PLN02207 147 SGFLAMMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVE---DG-YDAYVKLAILFTKANGILVNS 219 (468)
T ss_pred HHHHHHHHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCC---cc-HHHHHHHHHhcccCCEEEEEc
Confidence 999999988764321 1100 0112 568998 56 9999999877432 22 455667777889999999999
Q ss_pred cchhcHhHHHHHHH
Q 036900 229 AEEIEPGALQWLRN 242 (247)
Q Consensus 229 f~eLE~~~~~~l~~ 242 (247)
|++||.++++++++
T Consensus 220 f~~LE~~~~~~~~~ 233 (468)
T PLN02207 220 SFDIEPYSVNHFLD 233 (468)
T ss_pred hHHHhHHHHHHHHh
Confidence 99999999999965
No 21
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=3.1e-36 Score=271.49 Aligned_cols=208 Identities=18% Similarity=0.266 Sum_probs=153.1
Q ss_pred CCceEEEeccCCcCChHHHHHHHHH--HHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCC
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQ--IHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLP 81 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~--La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp 81 (247)
.++|||++|||+|||+|||++|||+ |++ ||++|||++|+.|+.++.+. ... . ..+++..+| +|+|
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~-~G~~VT~v~t~~~~~~~~~~-~~~-~-----~~~~~~~~~-----~glp 73 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSS-KNLHFTLATTEQARDLLSTV-EKP-R-----RPVDLVFFS-----DGLP 73 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhc-CCcEEEEEeccchhhhhccc-cCC-C-----CceEEEECC-----CCCC
Confidence 4679999999999999999999999 458 99999999999987765321 111 1 356776655 5787
Q ss_pred CCCCCccCcchhhHHHHHHHH-HhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHHHH
Q 036900 82 PNTENTENLSFDLIINFFASS-QSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGTLA 160 (247)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~ 160 (247)
++.+. ....++..+ +.+.+.+++++++ .+++|||+|.+++|+.+||+++|||+++||+++++++++
T Consensus 74 ~~~~~-------~~~~~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~ 140 (456)
T PLN02210 74 KDDPR-------APETLLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSV 140 (456)
T ss_pred CCccc-------CHHHHHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHH
Confidence 76421 112344444 4566777777765 258999999999999999999999999999999999999
Q ss_pred HHHhhhcC-CCCCCC-C-CccccCCCCcCcccchhhhhhhhhccCCCChhHH-hHHHHHHhhccceEEEEcccchhcHhH
Q 036900 161 YISLWLNL-PHRKTN-S-DEFTLPGFPERCHFHITQLHKYLRMADGTDDWSK-FMQPQISQSLKSYGMLCNTAEEIEPGA 236 (247)
Q Consensus 161 ~~~~~~~~-~~~~~~-~-~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~-~~~~~~~~~~~a~gilvNTf~eLE~~~ 236 (247)
+++++... +..... . +.+.+||+|+ ++.+|+|+.+... +..... .+.+..+...+++||++|||+|||+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 215 (456)
T PLN02210 141 YYRYYMKTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPS--GGAHFNNLMAEFADCLRYVKWVLVNSFYELESEI 215 (456)
T ss_pred HHhhhhccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcC--CchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHH
Confidence 88764311 111111 1 1256889887 9999999877642 222233 333444567789999999999999999
Q ss_pred HHHHHH
Q 036900 237 LQWLRN 242 (247)
Q Consensus 237 ~~~l~~ 242 (247)
++++++
T Consensus 216 ~~~l~~ 221 (456)
T PLN02210 216 IESMAD 221 (456)
T ss_pred HHHHhh
Confidence 999876
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.55 E-value=2e-14 Score=128.19 Aligned_cols=131 Identities=16% Similarity=0.224 Sum_probs=85.7
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCCCC
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNTEN 86 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~ 86 (247)
||+++++|++||++|++.||+.|.+ +||+|||++++.....+.+ .+++|+.++.... ........
T Consensus 2 rIl~~~~p~~GHv~P~l~la~~L~~-rGh~V~~~t~~~~~~~v~~------------~G~~~~~~~~~~~--~~~~~~~~ 66 (401)
T cd03784 2 RVLITTIGSRGDVQPLVALAWALRA-AGHEVRVATPPEFADLVEA------------AGLEFVPVGGDPD--ELLASPER 66 (401)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHH-CCCeEEEeeCHhHHHHHHH------------cCCceeeCCCCHH--HHHhhhhh
Confidence 8999999999999999999999999 9999999999866555443 4678887653100 00000000
Q ss_pred cc---CcchhhHHHHHHHH-HhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccH
Q 036900 87 TE---NLSFDLIINFFASS-QSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGG 155 (247)
Q Consensus 87 ~~---~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 155 (247)
.. .............. +.....++++++.+. ..++||||+|.+..|+..+|+++|||++.+++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 67 NAGLLLLGPGLLLGALRLLRREAEAMLDDLVAAAR---DWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 00 00000111111111 222334444444332 24799999999889999999999999999988764
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.49 E-value=1.9e-13 Score=121.77 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=79.0
Q ss_pred eccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCCCCccCc
Q 036900 11 LPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNTENTENL 90 (247)
Q Consensus 11 ~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~ 90 (247)
+.+|++||++|++.||+.|.+ +||+|||++++.+.+.+.+ .++.++.++......+..+. ...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~-~Gh~V~~~~~~~~~~~v~~------------~G~~~~~~~~~~~~~~~~~~--~~~-- 63 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVA-RGHRVTYATTEEFAERVEA------------AGAEFVLYGSALPPPDNPPE--NTE-- 63 (392)
T ss_pred CCCCccccccccHHHHHHHHh-CCCeEEEEeCHHHHHHHHH------------cCCEEEecCCcCcccccccc--ccC--
Confidence 458999999999999999999 9999999999888777665 46788877632100001110 000
Q ss_pred chhhHHHHHHHH-HhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccc
Q 036900 91 SFDLIINFFASS-QSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTG 153 (247)
Q Consensus 91 ~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 153 (247)
. ....+...+ ......+.++++.+. ..++||||+|.++.|+..+|+++|||++.+.+.
T Consensus 64 ~--~~~~~~~~~~~~~~~~~~~l~~~~~---~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 64 E--EPIDIIEKLLDEAEDVLPQLEEAYK---GDRPDLIVYDIASWTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred c--chHHHHHHHHHHHHHHHHHHHHHhc---CCCCCEEEECCccHHHHHHHHHhCCCEEEEehh
Confidence 0 111122211 222222333332222 236899999999899999999999999988654
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.44 E-value=7.4e-14 Score=127.93 Aligned_cols=225 Identities=19% Similarity=0.255 Sum_probs=120.2
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCC
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNT 84 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~ 84 (247)
+.|++++|+|++||++|+++||++|+. +||+||++++..+....... ..... ...+.....++....++++.+.
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~-~gh~vt~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 78 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAE-RGHNVTVVTPSFNALKLSKS-SKSKS----IKKINPPPFEFLTIPDGLPEGW 78 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHH-cCCceEEEEeechhcccCCc-cccee----eeeeecChHHhhhhhhhhccch
Confidence 579999999999999999999999999 99999999998776543321 10000 0001111112110112333322
Q ss_pred CCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhC-CceEEeccccHHHHHHHHH
Q 036900 85 ENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAG-TTNVTFSTGGGYGTLAYIS 163 (247)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lg-iP~v~f~~~~a~~~~~~~~ 163 (247)
+... .. ...........+...+++.+..+.......+||+|+|.|+.|...+|.+.+ |+...+++.++...++..+
T Consensus 79 ~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~ 155 (496)
T KOG1192|consen 79 EDDD-LD--ISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP 155 (496)
T ss_pred HHHH-HH--HHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc
Confidence 1110 00 001111111223333444332222111234999999999999999998875 9999999999998888775
Q ss_pred hhhc-CCCCCC--CCCccccCCCCcCcccchhhhhhhhhccCCCChhHHhHHHH----HHhhccceEEEEcc-cchhcHh
Q 036900 164 LWLN-LPHRKT--NSDEFTLPGFPERCHFHITQLHKYLRMADGTDDWSKFMQPQ----ISQSLKSYGMLCNT-AEEIEPG 235 (247)
Q Consensus 164 ~~~~-~~~~~~--~~~~~~ipg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~----~~~~~~a~gilvNT-f~eLE~~ 235 (247)
.+.. .|.... ..+...+++... .+...+++................... ......+++++.|| |.++|..
T Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~--n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~ 233 (496)
T KOG1192|consen 156 SPLSYVPSPFSLSSGDDMSFPERVP--NLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSN 233 (496)
T ss_pred CcccccCcccCccccccCcHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccC
Confidence 5432 222111 011112222111 044455555543211000001111111 11224566888888 9999987
Q ss_pred HHHHH
Q 036900 236 ALQWL 240 (247)
Q Consensus 236 ~~~~l 240 (247)
.+..+
T Consensus 234 ~~~~~ 238 (496)
T KOG1192|consen 234 PLLDF 238 (496)
T ss_pred cccCC
Confidence 66544
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.21 E-value=2.1e-11 Score=92.80 Aligned_cols=127 Identities=20% Similarity=0.190 Sum_probs=77.5
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCCCCc
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNTENT 87 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~ 87 (247)
|++...++.||++|++.||+.|.+ +||+|++.+.+...+.+.+ .+++|+.++.. ..++.. .
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~-rGh~V~~~~~~~~~~~v~~------------~Gl~~~~~~~~---~~~~~~---~ 61 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRR-RGHEVRLATPPDFRERVEA------------AGLEFVPIPGD---SRLPRS---L 61 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH-TT-EEEEEETGGGHHHHHH------------TT-EEEESSSC---GGGGHH---H
T ss_pred CEEEEcCChhHHHHHHHHHHHHhc-cCCeEEEeecccceecccc------------cCceEEEecCC---cCcCcc---c
Confidence 688999999999999999999999 9999999999888777754 57899987631 011100 0
Q ss_pred cCcchhhHHHHHH---HHHhchHHHHHHHHhhhhcCC--CCCcEEEecccccchHHHHHHhCCceEEeccccH
Q 036900 88 ENLSFDLIINFFA---SSQSLKTPLYNLLMGIKEKEG--KPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGG 155 (247)
Q Consensus 88 ~~~~~~~~~~~~~---~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 155 (247)
.....+..+.. ........+++...+.....+ ...++++.+.....+..+|+++|||++.....+-
T Consensus 62 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 62 --EPLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp --HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred --chhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 00000111111 111122222222222110111 2457888888888889999999999998776654
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.19 E-value=3.5e-06 Score=75.55 Aligned_cols=54 Identities=24% Similarity=0.467 Sum_probs=47.0
Q ss_pred ceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecC
Q 036900 6 EHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELP 72 (247)
Q Consensus 6 ~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp 72 (247)
.+|+++..|..||++|.+.||+.|.. +||+|+|++++...+.+.+. ++.|...+
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~-~gheV~~~~~~~~~~~ve~a------------g~~f~~~~ 55 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRR-RGHEVVFASTGKFKEFVEAA------------GLAFVAYP 55 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHh-cCCeEEEEeCHHHHHHHHHh------------Ccceeecc
Confidence 47999999999999999999999999 99999999999888777753 46677665
No 27
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.09 E-value=6.2e-05 Score=64.95 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=67.7
Q ss_pred eEEEecc-CCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCCC
Q 036900 7 HIVMLPF-MAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNTE 85 (247)
Q Consensus 7 hvv~~p~-p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~ 85 (247)
||++... -|.||+.-.+.|++.| + ||+|+|++.....+.+.. .+....++.. +......
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L-r--g~~v~~~~~~~~~~~~~~-------------~~~~~~~~~~----~~~~~~~ 61 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL-R--GHEVTFITSGPAPEFLKP-------------RFPVREIPGL----GPIQENG 61 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH-c--cCceEEEEcCCcHHHhcc-------------ccCEEEccCc----eEeccCC
Confidence 4555444 4899999999999999 4 799999998744333221 2334444311 1111101
Q ss_pred CccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccH
Q 036900 86 NTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGG 155 (247)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 155 (247)
..+. .. ...............++++++.+.+ .+||+||+|. .+++...|+..|||++.+.-...
T Consensus 62 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~---~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~ 125 (318)
T PF13528_consen 62 RLDR-WK-TVRNNIRWLARLARRIRREIRWLRE---FRPDLVISDF-YPLAALAARRAGIPVIVISNQYW 125 (318)
T ss_pred ccch-HH-HHHHHHHhhHHHHHHHHHHHHHHHh---cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHH
Confidence 1110 00 0111110011122334444443332 3699999995 45577889999999997655443
No 28
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.06 E-value=2.4e-05 Score=72.17 Aligned_cols=133 Identities=14% Similarity=0.215 Sum_probs=74.4
Q ss_pred ceEEEe-ccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCC
Q 036900 6 EHIVML-PFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNT 84 (247)
Q Consensus 6 ~hvv~~-p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~ 84 (247)
.+|+++ |.++.+|.+-+-.+++.|++ |||+||++++.... ..... . . .+++.+.++.. .+......
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~-rGH~VTvi~p~~~~-~~~~~-~---~-----~~~~~i~~~~~--~~~~~~~~ 87 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAE-RGHNVTVIKPTLRV-YYASH-L---C-----GNITEIDASLS--VEYFKKLV 87 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHH-cCCeEEEEeccccc-ccccC-C---C-----CCEEEEEcCCC--hHHHHHHH
Confidence 357755 99999999999999999999 99999999764321 10000 0 1 45665555421 01110000
Q ss_pred CCcc------Cc-ch-hhHHHHHH----HHH-hc-hHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHh-CCceEE
Q 036900 85 ENTE------NL-SF-DLIINFFA----SSQ-SL-KTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSA-GTTNVT 149 (247)
Q Consensus 85 ~~~~------~~-~~-~~~~~~~~----~~~-~~-~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~l-giP~v~ 149 (247)
...+ .. .. ........ ..+ .+ .+.+.++|+. ...++|+||+|.+......+|+.+ |+|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~----~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~ 163 (507)
T PHA03392 88 KSSAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN----KNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQ 163 (507)
T ss_pred hhhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc----CCCceeEEEecccchhHHHHHHHhCCCCEEE
Confidence 0000 00 00 00000111 111 11 1344444431 124699999998877777799999 999877
Q ss_pred eccccH
Q 036900 150 FSTGGG 155 (247)
Q Consensus 150 f~~~~a 155 (247)
..+...
T Consensus 164 ~ss~~~ 169 (507)
T PHA03392 164 ISSGYG 169 (507)
T ss_pred EcCCCC
Confidence 766443
No 29
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.96 E-value=0.00016 Score=66.51 Aligned_cols=35 Identities=23% Similarity=0.521 Sum_probs=22.9
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCC
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~ 43 (247)
+|+++|+ +.+|+++|..+++.|++ |||+||++++.
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~-rGH~VTvl~~~ 36 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAE-RGHNVTVLTPS 36 (500)
T ss_dssp -----------SHHHHHHHHHHHHH-H-TTSEEEHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHh-cCCceEEEEee
Confidence 6888885 78999999999999999 99999999874
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.80 E-value=0.00031 Score=61.00 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=64.1
Q ss_pred EeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCcccee-EEecCCCCCCCCCCCCCCCcc
Q 036900 10 MLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNIN-LVELPFCSSDHGLPPNTENTE 88 (247)
Q Consensus 10 ~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~-~~~lp~~~~~~~lp~~~~~~~ 88 (247)
.+.-.|.||+.|.+.++++|.+ ||+|+|+++......+.. .++. +...|.. .-..+.+ . .+
T Consensus 5 ~~~g~G~GH~~r~~ala~~L~~--g~ev~~~~~~~~~~~~~~------------~~~~~~~~~p~~--~~~~~~~-~-~~ 66 (321)
T TIGR00661 5 SVCGEGFGHTTRSVAIGEALKN--DYEVSYIASGRSKNYISK------------YGFKVFETFPGI--KLKGEDG-K-VN 66 (321)
T ss_pred EEeccCccHHHHHHHHHHHHhC--CCeEEEEEcCCHHHhhhh------------hcCcceeccCCc--eEeecCC-c-Cc
Confidence 3556788999999999999986 999999987663222222 1222 2222210 0000111 0 01
Q ss_pred CcchhhHHHHHHHHHhc-hHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEecccc
Q 036900 89 NLSFDLIINFFASSQSL-KTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGG 154 (247)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 154 (247)
........+.+ ...+.+..+-+.+ .+||+||+| +-..+..+|+.+|||++.+.-+.
T Consensus 67 ------~~~~l~~~~~~~~~~~~~~~~~l~~---~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 67 ------IVKTLRNKEYSPKKAIRREINIIRE---YNPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred ------HHHHHHhhccccHHHHHHHHHHHHh---cCCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 01111111111 1223222222221 368999999 56677889999999999655443
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.06 E-value=0.011 Score=52.17 Aligned_cols=122 Identities=16% Similarity=0.094 Sum_probs=69.4
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCCCC
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNTEN 86 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~ 86 (247)
+|++..-..-||+.|.+.+|+.|.. +||+|+|+.+..-.+. .... . .++.++.++. .++.-
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~-~g~~v~~vg~~~~~e~--~l~~---~-----~g~~~~~~~~----~~l~~---- 63 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKE-DNWDISYIGSHQGIEK--TIIE---K-----ENIPYYSISS----GKLRR---- 63 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHh-CCCEEEEEECCCcccc--ccCc---c-----cCCcEEEEec----cCcCC----
Confidence 4555555566999999999999999 9999999997654321 1111 0 3567776652 13221
Q ss_pred ccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccc--hHHHHHHhCCceEEeccccHH
Q 036900 87 TENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGW--AVDVAKSAGTTNVTFSTGGGY 156 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~a~ 156 (247)
. .+...+...+....... ....++++ .+||+||....... +.-.|+-+|+|.++.-.....
T Consensus 64 ~--~~~~~~~~~~~~~~~~~-~~~~i~~~------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~ 126 (352)
T PRK12446 64 Y--FDLKNIKDPFLVMKGVM-DAYVRIRK------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTP 126 (352)
T ss_pred C--chHHHHHHHHHHHHHHH-HHHHHHHh------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCc
Confidence 0 01000111111111111 11223444 36999999664332 366788889999886655433
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=95.93 E-value=0.11 Score=45.95 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=67.1
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCC-eEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCCCC
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGF-KITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNTEN 86 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~-~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~ 86 (247)
|++.--..-||+.|.+.|++.|.. +|. +|.++.+....+. ...+ . .++.++.++.. ++.. ...
T Consensus 3 ivl~~gGTGGHv~pAlAl~~~l~~-~g~~~v~~~~~~~~~e~---~l~~--~-----~~~~~~~I~~~----~~~~-~~~ 66 (357)
T COG0707 3 IVLTAGGTGGHVFPALALAEELAK-RGWEQVIVLGTGDGLEA---FLVK--Q-----YGIEFELIPSG----GLRR-KGS 66 (357)
T ss_pred EEEEeCCCccchhHHHHHHHHHHh-hCccEEEEeccccccee---eecc--c-----cCceEEEEecc----cccc-cCc
Confidence 455555666999999999999999 999 5777755443321 1110 1 36777777631 2221 111
Q ss_pred ccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEeccccc--chHHHHHHhCCceEEeccc
Q 036900 87 TENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFG--WAVDVAKSAGTTNVTFSTG 153 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~--~~~~vA~~lgiP~v~f~~~ 153 (247)
.. .+...+..... .-..+.++++. +||+||.=..+. .+.-.|..+|||.+.--+-
T Consensus 67 ~~-----~~~~~~~~~~~-~~~a~~il~~~------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn 123 (357)
T COG0707 67 LK-----LLKAPFKLLKG-VLQARKILKKL------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN 123 (357)
T ss_pred HH-----HHHHHHHHHHH-HHHHHHHHHHc------CCCEEEecCCccccHHHHHHHhCCCCEEEEecC
Confidence 11 11111221111 12334566654 599999954443 3455678889999985543
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.83 E-value=0.21 Score=43.34 Aligned_cols=115 Identities=20% Similarity=0.185 Sum_probs=64.4
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCCCCc
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNTENT 87 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~ 87 (247)
|++..--.-||+...+.|++.|.+ +||+|++++...... ..... . .++++..++.. ++...
T Consensus 2 ~~~~~~~~gG~~~~~~~la~~l~~-~G~ev~v~~~~~~~~--~~~~~---~-----~~~~~~~~~~~----~~~~~---- 62 (350)
T cd03785 2 ILIAGGGTGGHIFPALALAEELRE-RGAEVLFLGTKRGLE--ARLVP---K-----AGIPLHTIPVG----GLRRK---- 62 (350)
T ss_pred EEEEecCchhhhhHHHHHHHHHHh-CCCEEEEEECCCcch--hhccc---c-----cCCceEEEEec----CcCCC----
Confidence 455555556999999999999999 999999998753211 11110 0 35777777642 22110
Q ss_pred cCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEeccc-ccc-hHHHHHHhCCceEEe
Q 036900 88 ENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIF-FGW-AVDVAKSAGTTNVTF 150 (247)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~-~~~-~~~vA~~lgiP~v~f 150 (247)
... ..+..++..... ...+..++++ .+||+|++..- ..+ +...|+..|+|.++.
T Consensus 63 ~~~--~~~~~~~~~~~~-~~~~~~~i~~------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 63 GSL--KKLKAPFKLLKG-VLQARKILKK------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred ChH--HHHHHHHHHHHH-HHHHHHHHHh------cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 000 001111111111 1223344443 36899998753 233 456678889999864
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=95.82 E-value=0.1 Score=46.61 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=32.0
Q ss_pred ceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 6 EHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 6 ~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
++|++..--.-||+.|. .|++.|.. +|.+|+|+.+..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~-~~~~~~~~g~gg 42 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKE-HYPNARFIGVAG 42 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHh-cCCCcEEEEEcc
Confidence 57777777777999999 99999999 999999998753
No 35
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.44 E-value=0.18 Score=42.86 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=28.9
Q ss_pred cCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcch
Q 036900 13 FMAHGHLIPFLALARQIHQSTGFKITIANTPLNI 46 (247)
Q Consensus 13 ~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~ 46 (247)
--|.||+.=.+.||+.|.. +|+.|+|++.....
T Consensus 11 ~iG~GHv~Rcl~LA~~l~~-~g~~v~f~~~~~~~ 43 (279)
T TIGR03590 11 EIGLGHVMRCLTLARALHA-QGAEVAFACKPLPG 43 (279)
T ss_pred cccccHHHHHHHHHHHHHH-CCCEEEEEeCCCCH
Confidence 3478999999999999998 99999999987543
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=95.43 E-value=0.38 Score=41.69 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=31.9
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCC
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~ 43 (247)
+|+++.--..||+....+|++.|.. +||+|++++.+
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~-~g~eV~vv~~~ 37 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIK-RGVEVLWLGTK 37 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHh-CCCEEEEEeCC
Confidence 6888888888999977899999999 99999999763
No 37
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=95.35 E-value=0.42 Score=41.79 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=65.4
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCCCC
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNTEN 86 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~ 86 (247)
+|+++.-..-||..-+++|++.|.+ +||+|++++....... .... ..+++++.++.+ ++... .
T Consensus 3 ~i~i~~~g~gG~~~~~~~la~~L~~-~g~ev~vv~~~~~~~~--~~~~--------~~g~~~~~~~~~----~~~~~--~ 65 (357)
T PRK00726 3 KILLAGGGTGGHVFPALALAEELKK-RGWEVLYLGTARGMEA--RLVP--------KAGIEFHFIPSG----GLRRK--G 65 (357)
T ss_pred EEEEEcCcchHhhhHHHHHHHHHHh-CCCEEEEEECCCchhh--hccc--------cCCCcEEEEecc----CcCCC--C
Confidence 5777776666999999999999999 9999999987542111 1100 025667766532 22111 0
Q ss_pred ccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccc-cch-HHHHHHhCCceEEe
Q 036900 87 TENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFF-GWA-VDVAKSAGTTNVTF 150 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~-~~~-~~vA~~lgiP~v~f 150 (247)
... .+......... ...+.+++++ .+||+|++.... .|. .-+++..|+|.+..
T Consensus 66 --~~~--~l~~~~~~~~~-~~~~~~~ik~------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 66 --SLA--NLKAPFKLLKG-VLQARKILKR------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred --hHH--HHHHHHHHHHH-HHHHHHHHHh------cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 000 01111111111 1123334433 369999998633 444 44566778998865
No 38
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=94.21 E-value=1.4 Score=39.62 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=31.8
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCC
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~ 43 (247)
+.+|+++.....|+-.=+..+|+.|++ +||+||+++..
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~-~G~~V~ii~~~ 40 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAK-HGWKVDLVGYL 40 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHh-cCceEEEEEec
Confidence 446777777777887888999999999 99999999864
No 39
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=94.12 E-value=1 Score=39.95 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCCCCccCcchhhHHHHHH
Q 036900 21 PFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNTENTENLSFDLIINFFA 100 (247)
Q Consensus 21 P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~~ 100 (247)
++-+||+.|++ +||+|++++...... . . .+++.+.++... .... ..... ...+..
T Consensus 12 ~~~~la~~L~~-~G~~v~~~~~~~~~~------~---~-----~~v~~~~~~~~~----~~~~----~~~~~--~~~~~~ 66 (396)
T cd03818 12 QFRHLAPALAA-QGHEVVFLTEPNAAP------P---P-----GGVRVVRYRPPR----GPTS----GTHPY--LREFEE 66 (396)
T ss_pred hHHHHHHHHHH-CCCEEEEEecCCCCC------C---C-----CCeeEEEecCCC----CCCC----CCCcc--chhHHH
Confidence 36789999999 999999998754421 0 0 136666665320 0110 00110 112222
Q ss_pred HHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHh-CCceEEec
Q 036900 101 SSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSA-GTTNVTFS 151 (247)
Q Consensus 101 ~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~l-giP~v~f~ 151 (247)
........++. +..+.. .+.+||.|++....+++.-+.+.+ ++|.+.+.
T Consensus 67 ~~~~~~~~~~~-~~~~~~-~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 67 AVLRGQAVARA-LLALRA-KGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHHHHHHHHHH-HHHHHh-cCCCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 22111112222 222211 134689999986555556666664 58887643
No 40
>PLN00142 sucrose synthase
Probab=92.66 E-value=1 Score=44.03 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=24.0
Q ss_pred CCCcEEEeccccc-ch-HHHHHHhCCceEEec
Q 036900 122 KPPICIITDIFFG-WA-VDVAKSAGTTNVTFS 151 (247)
Q Consensus 122 ~~~~~vI~D~~~~-~~-~~vA~~lgiP~v~f~ 151 (247)
..||+|++-+..+ ++ ..+|+++|||.+.-.
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~ 438 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIA 438 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEc
Confidence 4689999998775 55 679999999987643
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=92.27 E-value=1.7 Score=38.24 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=28.1
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCC
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~ 43 (247)
+|++..--.-||+.|-+ +++.|.+ +++++.++...
T Consensus 3 ki~i~~Ggt~G~i~~a~-l~~~L~~-~~~~~~~~~~~ 37 (380)
T PRK00025 3 RIAIVAGEVSGDLLGAG-LIRALKA-RAPNLEFVGVG 37 (380)
T ss_pred eEEEEecCcCHHHHHHH-HHHHHHh-cCCCcEEEEEc
Confidence 56766666779999998 9999998 88777777653
No 42
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=91.73 E-value=1.1 Score=39.29 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.7
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 17 GHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 17 GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
|+-..+.+|++.|+. +||+|+++++...
T Consensus 22 G~~~~~~~l~~~L~~-~g~~V~v~~~~~~ 49 (398)
T cd03800 22 GQNVYVLELARALAR-LGHEVDIFTRRID 49 (398)
T ss_pred ceeehHHHHHHHHhc-cCceEEEEEecCC
Confidence 788899999999999 9999999987543
No 43
>PRK10307 putative glycosyl transferase; Provisional
Probab=91.26 E-value=2.9 Score=37.22 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCc
Q 036900 22 FLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 22 ~l~La~~La~~~G~~VT~~~t~~ 44 (247)
+.+|++.|.+ +||+||++++..
T Consensus 21 ~~~l~~~L~~-~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAA-RGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHH-CCCeEEEEecCC
Confidence 4699999999 999999999763
No 44
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=91.07 E-value=5.9 Score=38.79 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=60.4
Q ss_pred cCChHHHHHHHHHH--------HhcCCC----eEEEEeCCcchHHhhhh---cCCCCCCCCCccceeEEecCCCCCCCCC
Q 036900 16 HGHLIPFLALARQI--------HQSTGF----KITIANTPLNIQYLQNT---ISCNNPNSSEKFNINLVELPFCSSDHGL 80 (247)
Q Consensus 16 ~GHi~P~l~La~~L--------a~~~G~----~VT~~~t~~~~~~~~~~---~~~~~~~~~~~~~i~~~~lp~~~~~~~l 80 (247)
-|+..=.++||+.| +. +|+ +|+++|-......-... ...-.+ .++.+++.+|+.+.
T Consensus 279 GGq~vYV~elaraL~~~~~~~La~-~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~----~~~~~I~rvp~g~~---- 349 (784)
T TIGR02470 279 GGQVVYILDQVRALENEMLQRIKL-QGLEITPKILIVTRLIPDAEGTTCNQRLEKVYG----TEHAWILRVPFRTE---- 349 (784)
T ss_pred CCceeHHHHHHHHHHHHHHHHHHh-cCCCccceEEEEecCCCCccccccccccccccC----CCceEEEEecCCCC----
Confidence 46666778888864 57 899 67788854321110000 000000 15788888886321
Q ss_pred CCCCCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEeccccc-ch-HHHHHHhCCceE-Eec
Q 036900 81 PPNTENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFG-WA-VDVAKSAGTTNV-TFS 151 (247)
Q Consensus 81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~-~~-~~vA~~lgiP~v-~f~ 151 (247)
.+.....-++.. .++..+..+...+.+.+.. ..+.+||+|++-+..+ ++ ..+|+++|||.+ +++
T Consensus 350 -~~~~~~~~i~k~---~l~p~l~~f~~~~~~~~~~---~~~~~pDlIHahy~d~glva~lla~~lgVP~v~t~H 416 (784)
T TIGR02470 350 -NGIILRNWISRF---EIWPYLETFAEDAEKEILA---ELQGKPDLIIGNYSDGNLVASLLARKLGVTQCTIAH 416 (784)
T ss_pred -cccccccccCHH---HHHHHHHHHHHHHHHHHHH---hcCCCCCEEEECCCchHHHHHHHHHhcCCCEEEECC
Confidence 110000112221 2222222222223322221 1124689999987664 54 678999999944 444
No 45
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=89.72 E-value=4.8 Score=29.65 Aligned_cols=34 Identities=15% Similarity=0.377 Sum_probs=26.3
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
|+++.--..+| ..++++.|.. +|++|++++....
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~-~g~~V~ii~~~~~ 35 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKK-RGYDVHIITPRND 35 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHH-CCCEEEEEEcCCC
Confidence 56666555566 4688999999 9999999998544
No 46
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=89.52 E-value=4.3 Score=34.60 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=26.0
Q ss_pred cCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 16 HGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 16 ~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
.|+-.-+..|++.|++ +|++|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~-~g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVK-RGHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHh-CCceEEEEecCCC
Confidence 5999999999999999 9999999987644
No 47
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=89.51 E-value=1.1 Score=39.18 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=42.8
Q ss_pred CceEEEecc--CCcCChHHHHHHHHHHHhc-CCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCC
Q 036900 5 NEHIVMLPF--MAHGHLIPFLALARQIHQS-TGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPF 73 (247)
Q Consensus 5 ~~hvv~~p~--p~~GHi~P~l~La~~La~~-~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 73 (247)
.++|+|..= .|.||+-=++..|+.|... .|++|+++|......-.. .. .+++++.||.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~------~~-----~gVd~V~LPs 69 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP------GP-----AGVDFVKLPS 69 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC------Cc-----ccCceEecCc
Confidence 347888764 6789999999999999993 399999999754422111 01 5799999983
No 48
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.27 E-value=6.2 Score=34.14 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=29.6
Q ss_pred eEEEeccCCc-CChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 7 HIVMLPFMAH-GHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 7 hvv~~p~p~~-GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
+|+++.+|.. |.-.=..+|++.|++ +||+|+++++..
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~-~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALAR-RGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHh-cCCceEEEecCC
Confidence 4566666544 777788999999999 999999998753
No 49
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=87.52 E-value=5.7 Score=40.06 Aligned_cols=28 Identities=14% Similarity=0.381 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHhcCC--CeEEEEeCCcc
Q 036900 17 GHLIPFLALARQIHQSTG--FKITIANTPLN 45 (247)
Q Consensus 17 GHi~P~l~La~~La~~~G--~~VT~~~t~~~ 45 (247)
|+..=.++||+.|++ +| ++|+++|-...
T Consensus 196 Gq~vYV~ELAraLa~-~~gv~~Vdl~TR~~~ 225 (1050)
T TIGR02468 196 GQVKYVVELARALGS-MPGVYRVDLLTRQVS 225 (1050)
T ss_pred ChHHHHHHHHHHHHh-CCCCCEEEEEeCCcC
Confidence 466677999999999 87 79999986543
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=86.08 E-value=11 Score=31.78 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=25.3
Q ss_pred cCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 16 HGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 16 ~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
-|+-.-..+|++.|++ +|++|+++++...
T Consensus 15 gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 43 (359)
T cd03823 15 GGAEVVAHDLAEALAK-RGHEVAVLTAGED 43 (359)
T ss_pred cchHHHHHHHHHHHHh-cCCceEEEeCCCC
Confidence 4788889999999999 9999999987644
No 51
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=85.64 E-value=1 Score=38.34 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=29.9
Q ss_pred CCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchH
Q 036900 14 MAHGHLIPFLALARQIHQSTGFKITIANTPLNIQ 47 (247)
Q Consensus 14 p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~ 47 (247)
-|.||+.=++.||+.|.. +|+.++|++.+.+.+
T Consensus 13 iGmGHV~R~l~LA~~l~k-~~~~~~fl~k~~~e~ 45 (318)
T COG3980 13 IGMGHVMRTLTLARELEK-RGFACLFLTKQDIEA 45 (318)
T ss_pred cCcchhhhHHHHHHHHHh-cCceEEEecccchhh
Confidence 478999999999999999 999999999887554
No 52
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=82.08 E-value=15 Score=33.23 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCC--eEEEEeCC
Q 036900 20 IPFLALARQIHQSTGF--KITIANTP 43 (247)
Q Consensus 20 ~P~l~La~~La~~~G~--~VT~~~t~ 43 (247)
.=+.+|++.|+. +|| +|+++|..
T Consensus 30 ~~v~~La~~L~~-~G~~~~V~v~t~~ 54 (439)
T TIGR02472 30 KYVLELARALAR-RSEVEQVDLVTRL 54 (439)
T ss_pred hHHHHHHHHHHh-CCCCcEEEEEecc
Confidence 456799999999 987 99999954
No 53
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=81.44 E-value=5 Score=30.31 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=41.2
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhh
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNT 52 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~ 52 (247)
++++||+...++-+|-.-..-++..|.+ +|++|+++-.....+.+...
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHH
Confidence 4678999999999999999999999998 99999999887666655543
No 54
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=80.48 E-value=2.5 Score=31.37 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCCCCccCcchhhHHHHHHH
Q 036900 22 FLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNTENTENLSFDLIINFFAS 101 (247)
Q Consensus 22 ~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~~~ 101 (247)
+.+|++.|++ +||+||+++.......-. .. ..+++++.++.+ ..+. ..... .+.
T Consensus 7 ~~~l~~~L~~-~G~~V~v~~~~~~~~~~~-~~---------~~~~~~~~~~~~----~~~~---~~~~~------~~~-- 60 (160)
T PF13579_consen 7 VRELARALAA-RGHEVTVVTPQPDPEDDE-EE---------EDGVRVHRLPLP----RRPW---PLRLL------RFL-- 60 (160)
T ss_dssp HHHHHHHHHH-TT-EEEEEEE---GGG-S-EE---------ETTEEEEEE--S-----SSS---GGGHC------CHH--
T ss_pred HHHHHHHHHH-CCCEEEEEecCCCCcccc-cc---------cCCceEEeccCC----ccch---hhhhH------HHH--
Confidence 5789999999 999999998654432111 10 146788877753 1110 00000 111
Q ss_pred HHhchHHHHHHHHhhhhcCCCCCcEEEeccccc-chHHHHH-HhCCceEEec
Q 036900 102 SQSLKTPLYNLLMGIKEKEGKPPICIITDIFFG-WAVDVAK-SAGTTNVTFS 151 (247)
Q Consensus 102 ~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~-~~~~vA~-~lgiP~v~f~ 151 (247)
..+.+++.. . ..++|+|.+-.... ++..+++ ..|+|.++-.
T Consensus 61 -----~~~~~~l~~-~---~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 61 -----RRLRRLLAA-R---RERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp -----HHHHHHCHH-C---T---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred -----HHHHHHHhh-h---ccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 123333311 1 14689887765433 4455666 7899987655
No 55
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.82 E-value=4.9 Score=29.18 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=36.7
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhh
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~ 51 (247)
+|++.+.++-.|...+.-++..|.. +|++|+++......+.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~-~G~~V~~lg~~~~~~~l~~ 44 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRD-AGFEVIDLGVDVPPEEIVE 44 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHH
Confidence 4889999999999999999999999 9999988876655544443
No 56
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=78.90 E-value=10 Score=33.58 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 17 GHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 17 GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
|--.=..+|++.|+. +||+|+++++..
T Consensus 15 G~e~~~~~la~~L~~-~G~~V~v~~~~~ 41 (398)
T cd03796 15 GVETHIYQLSQCLIK-RGHKVVVITHAY 41 (398)
T ss_pred cHHHHHHHHHHHHHH-cCCeeEEEeccC
Confidence 445677899999999 999999999753
No 57
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=78.22 E-value=31 Score=27.18 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHh-CCceEEec
Q 036900 108 PLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSA-GTTNVTFS 151 (247)
Q Consensus 108 ~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~l-giP~v~f~ 151 (247)
.+.+.+.+|.++ +-.||+||.-.-.+-+.-+-+-+ ++|.+.|.
T Consensus 52 av~~a~~~L~~~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 52 AVARAARQLRAQ-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred HHHHHHHHHHHc-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 444555555543 56789999966544456677777 77777654
No 58
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=77.53 E-value=29 Score=30.60 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=24.6
Q ss_pred CcCChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 15 AHGHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 15 ~~GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
.-|--.=..+||+.|++ +||+||++++..
T Consensus 19 ~GG~e~~v~~la~~L~~-~G~~V~v~~~~~ 47 (405)
T TIGR03449 19 AGGMNVYILETATELAR-RGIEVDIFTRAT 47 (405)
T ss_pred CCCceehHHHHHHHHhh-CCCEEEEEeccc
Confidence 34666778999999999 999999999754
No 59
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=76.82 E-value=27 Score=29.78 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=22.4
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 17 GHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 17 GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
|--.-..+||+.|+. +||+|++++...
T Consensus 11 G~e~~~~~l~~~L~~-~g~~v~v~~~~~ 37 (355)
T cd03819 11 GVERGTLELARALVE-RGHRSLVASAGG 37 (355)
T ss_pred cHHHHHHHHHHHHHH-cCCEEEEEcCCC
Confidence 555667899999999 999999998754
No 60
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=76.01 E-value=53 Score=28.84 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCCCCccCcchhhHH
Q 036900 17 GHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNTENTENLSFDLII 96 (247)
Q Consensus 17 GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~ 96 (247)
-|+.=+-.+.++|-. +||+|.+.+-... .+...+.. .++.+..+-- .+ . + . ..
T Consensus 11 ~hvhfFk~~I~eL~~-~GheV~it~R~~~--~~~~LL~~--------yg~~y~~iG~----~g--~---~---~----~~ 63 (335)
T PF04007_consen 11 AHVHFFKNIIRELEK-RGHEVLITARDKD--ETEELLDL--------YGIDYIVIGK----HG--D---S---L----YG 63 (335)
T ss_pred hHHHHHHHHHHHHHh-CCCEEEEEEeccc--hHHHHHHH--------cCCCeEEEcC----CC--C---C---H----HH
Confidence 377778899999999 9999987765432 12222110 4667776541 11 1 1 0 12
Q ss_pred HHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHHHH
Q 036900 97 NFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGYGT 158 (247)
Q Consensus 97 ~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~ 158 (247)
.+......... +-.++++ .+||++|+ ....-+..+|.-+|+|.+.|.=..-+..
T Consensus 64 Kl~~~~~R~~~-l~~~~~~------~~pDv~is-~~s~~a~~va~~lgiP~I~f~D~e~a~~ 117 (335)
T PF04007_consen 64 KLLESIERQYK-LLKLIKK------FKPDVAIS-FGSPEAARVAFGLGIPSIVFNDTEHAIA 117 (335)
T ss_pred HHHHHHHHHHH-HHHHHHh------hCCCEEEe-cCcHHHHHHHHHhCCCeEEEecCchhhc
Confidence 33333222211 2222322 35899996 2234567799999999999987654433
No 61
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=74.93 E-value=5.3 Score=33.98 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=26.2
Q ss_pred cCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 16 HGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 16 ~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
-|+.+.+.+|++.|+. +||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~-~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRA-RGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHH-CCCEEEEEeCCch
Confidence 5999999999999999 9999999997643
No 62
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=74.25 E-value=4 Score=30.84 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 17 GHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 17 GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
|=-.-+.+|++.|++ +||+||+++....
T Consensus 13 G~e~~~~~l~~~l~~-~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 13 GAERVVLNLARALAK-RGHEVTVVSPGVK 40 (177)
T ss_dssp HHHHHHHHHHHHHHH-TT-EEEEEESS-T
T ss_pred hHHHHHHHHHHHHHH-CCCEEEEEEcCCC
Confidence 555678899999999 9999999977533
No 63
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=72.17 E-value=5.7 Score=33.42 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=31.6
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcch
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNI 46 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~ 46 (247)
|+++.....|+..-+.+|++.|.+ +|++|+++++....
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~-~g~~v~~~~~~~~~ 39 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRA-AGYEVHVVAPPGDE 39 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHh-cCCeeEEEecCCCc
Confidence 556655578899999999999999 99999999986553
No 64
>PRK06321 replicative DNA helicase; Provisional
Probab=69.96 E-value=56 Score=30.15 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=35.1
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhh
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQ 50 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~ 50 (247)
+++-.-|+.|=..=.+++|...+...|..|-|++.+.....+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 5667779999999999999999852589999999887765554
No 65
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=68.40 E-value=15 Score=29.49 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=39.8
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhh
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNT 52 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~ 52 (247)
+++|++.+.++-.|-+...-++..|.. +|++|+++......+.+...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHH
Confidence 568999999999999999999999989 99999998876666555544
No 66
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=68.21 E-value=9.6 Score=32.33 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=27.7
Q ss_pred ccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 12 PFMAHGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 12 p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
|...-|+-.-..+|++.|++ +|++|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEK-RGHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHH-cCCeEEEEeCCCC
Confidence 33456999999999999999 9999999987543
No 67
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=68.19 E-value=16 Score=29.33 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=41.3
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhc
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTI 53 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~ 53 (247)
+++|++.+.++-.|-....-++..|.+ +|++|+++......+.+....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~-~G~~vi~LG~~vp~e~~v~~~ 131 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRA-NGFDVIDLGRDVPIDTVVEKV 131 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHh-CCcEEEECCCCCCHHHHHHHH
Confidence 569999999999999999999999988 999999998877766665543
No 68
>PRK09165 replicative DNA helicase; Provisional
Probab=67.52 E-value=67 Score=29.84 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=34.8
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhc--------------CCCeEEEEeCCcchHHhhh
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQS--------------TGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~--------------~G~~VT~~~t~~~~~~~~~ 51 (247)
+++..-|+.|=..=++++|...+.. +|..|.|++.+.....+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 5667779999999999999988862 2788999999877665543
No 69
>PRK08760 replicative DNA helicase; Provisional
Probab=66.79 E-value=57 Score=30.12 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=35.0
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhh
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQ 50 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~ 50 (247)
+++-.-|+.|=..=++++|...+.++|..|-|++.+.....+.
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~ 274 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLA 274 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHH
Confidence 6667789999999999999999862599999999887665444
No 70
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=64.85 E-value=20 Score=29.21 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=40.9
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhh
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNT 52 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~ 52 (247)
.+++|++...++-.|-+...=++..|.+ +|++|+++-.....+.+...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSN-NGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh-CCCEEEECCCCCCHHHHHHH
Confidence 3579999999999999999989999988 99999999887666655544
No 71
>PRK05595 replicative DNA helicase; Provisional
Probab=64.70 E-value=81 Score=28.72 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=35.4
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhh
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~ 51 (247)
+++-.-|+.|=..=++++|..++..+|..|-|++.+.....+..
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHH
Confidence 55667799999999999999887426999999999877655543
No 72
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=64.37 E-value=1.1e+02 Score=27.55 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=35.7
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhh
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~ 51 (247)
+++-.-|+.|=..=++++|..++..+|..|-|++.+....++..
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~ 240 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGE 240 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 56677799999999999999998327999999998877665543
No 73
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=62.31 E-value=31 Score=24.71 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=36.5
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhh
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~ 51 (247)
++++...+...|-.-+.-++..|.. +|++|.++......+.+..
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~-~G~~v~~~d~~~~~~~l~~ 45 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRK-AGHEVDILDANVPPEELVE 45 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHH-TTBEEEEEESSB-HHHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHH-CCCeEEEECCCCCHHHHHH
Confidence 6889999999999999999999999 9999999976554444443
No 74
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=62.25 E-value=87 Score=28.13 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=22.7
Q ss_pred CCcEEEecccccchHHHHHHh-CCceEEecccc
Q 036900 123 PPICIITDIFFGWAVDVAKSA-GTTNVTFSTGG 154 (247)
Q Consensus 123 ~~~~vI~D~~~~~~~~vA~~l-giP~v~f~~~~ 154 (247)
.||++|.+.-.+.+.-+++.+ ++|.+.+.-.+
T Consensus 107 ~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P 139 (419)
T cd03806 107 VPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYP 139 (419)
T ss_pred CCCEEEEcCCcccHHHHHHHhcCCeEEEEecCC
Confidence 589888887677767777653 78877765533
No 75
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=61.44 E-value=57 Score=31.09 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEe-cc--cccchHHHHHHhCC--ceEEecccc
Q 036900 107 TPLYNLLMGIKEKEGKPPICIIT-DI--FFGWAVDVAKSAGT--TNVTFSTGG 154 (247)
Q Consensus 107 ~~l~~ll~~~~~~~~~~~~~vI~-D~--~~~~~~~vA~~lgi--P~v~f~~~~ 154 (247)
..++++.+.+.+ .+|||+|. |. |......-+++.|+ |.+.|.+-.
T Consensus 297 ~~~~~l~~~i~~---~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPq 346 (608)
T PRK01021 297 YRYRKLYKTILK---TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPS 346 (608)
T ss_pred HHHHHHHHHHHh---cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc
Confidence 344445555442 47887654 85 22335677788896 877665433
No 76
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=61.44 E-value=1.1e+02 Score=27.51 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=35.4
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhh
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQ 50 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~ 50 (247)
+++-.-|+.|=..=+++++..++..+|..|-|++.+.....+.
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 5667779999999999999998862599999999987766554
No 77
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=61.05 E-value=1.1e+02 Score=27.24 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=56.9
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCC--CeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCCC
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTG--FKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPNT 84 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G--~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~ 84 (247)
.++-+-...-|.++-...|+++|.+ ++ ++|.+.++......+..... . .++..+.+|.+ .+
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~-~~~~~~i~~t~~t~~~~~~~~~~~---~-----~~~~~~~~P~d-----~~--- 113 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRK-RYPDLPILVTTMTPTGSERAQALF---G-----DDVEHRYLPYD-----LP--- 113 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHH-hCCCCcEEEeCCCccHHHHHHHhc---C-----CCceEEEecCC-----cH---
Confidence 3566777788999999999999988 65 55443332222222221111 1 24445555521 00
Q ss_pred CCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccch--HHHHHHhCCceEEec
Q 036900 85 ENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWA--VDVAKSAGTTNVTFS 151 (247)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~--~~vA~~lgiP~v~f~ 151 (247)
..++.+++.. +||+++.-..-.|. ...+++.|+|.+...
T Consensus 114 ----------------------~~~~~~l~~~------~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 114 ----------------------GAVRRFLRFW------RPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred ----------------------HHHHHHHHhh------CCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 1234556554 48877754223353 456788999998764
No 78
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=60.88 E-value=24 Score=27.62 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=31.1
Q ss_pred hHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccccHH
Q 036900 106 KTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTGGGY 156 (247)
Q Consensus 106 ~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 156 (247)
...++..+.++.. .+.++||-+.. +...|+++|+|++.+.++--+
T Consensus 111 ~~e~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 111 EEEIEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 3566777776653 36899999875 689999999999988875443
No 79
>PRK07773 replicative DNA helicase; Validated
Probab=59.59 E-value=1.2e+02 Score=30.39 Aligned_cols=44 Identities=16% Similarity=0.112 Sum_probs=35.8
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhh
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~ 51 (247)
+++-.-|+.|=..=.+++|...+.++|..|.|++.+....++..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 66677799999999999999998625899999998877665543
No 80
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=59.53 E-value=16 Score=30.83 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=26.4
Q ss_pred CcCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 15 AHGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 15 ~~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
.-|+..-..+|++.|++ +|++|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAK-LGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHh-cCCcEEEEecCCC
Confidence 45999999999999999 9999999987644
No 81
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=58.32 E-value=18 Score=31.62 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCC
Q 036900 21 PFLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 21 P~l~La~~La~~~G~~VT~~~t~ 43 (247)
=+.+||+.|++ +||+||++++.
T Consensus 18 ~~~~la~~L~~-~G~~V~v~~~~ 39 (392)
T cd03805 18 LVVDAALALQS-RGHEVTIYTSH 39 (392)
T ss_pred HHHHHHHHHHh-CCCeEEEEcCC
Confidence 45899999999 99999999874
No 82
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=56.71 E-value=18 Score=29.11 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=27.3
Q ss_pred CCcEEEecccccchHHHHHHhCCceEEecccc
Q 036900 123 PPICIITDIFFGWAVDVAKSAGTTNVTFSTGG 154 (247)
Q Consensus 123 ~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 154 (247)
.+.+||+|---..+.+-|++.|||.+++..-.
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~ 60 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDRKE 60 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEecccc
Confidence 47899999877789999999999999877643
No 83
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=55.55 E-value=22 Score=31.27 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=30.0
Q ss_pred CceEEEeccC-CcCChHHHHHHHHHHHhcCCCeEEEEeC
Q 036900 5 NEHIVMLPFM-AHGHLIPFLALARQIHQSTGFKITIANT 42 (247)
Q Consensus 5 ~~hvv~~p~p-~~GHi~P~l~La~~La~~~G~~VT~~~t 42 (247)
..+|+++..- |.||..+...|++.|.. +|+.+.++..
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~-~g~~~~~~~d 41 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQ-KGIKDVIVCD 41 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHh-cCCCcEEEEE
Confidence 4478888775 55999999999999999 9998666644
No 84
>PLN02275 transferase, transferring glycosyl groups
Probab=55.17 E-value=1.5e+02 Score=26.04 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCCC-CceEEEeccCCcCChHHHHHHHHHHHhcCCC-eEEEEeCC
Q 036900 1 MGSE-NEHIVMLPFMAHGHLIPFLALARQIHQSTGF-KITIANTP 43 (247)
Q Consensus 1 m~~~-~~hvv~~p~p~~GHi~P~l~La~~La~~~G~-~VT~~~t~ 43 (247)
|+.+ +.||+++ +-.|.---|..+++.|++ +|+ +||+++-.
T Consensus 1 ~~~~~~~~~~~~--~~~g~~~r~~~~~~~l~~-~~~~~v~vi~~~ 42 (371)
T PLN02275 1 MGRRGRAAVVVL--GDFGRSPRMQYHALSLAR-QASFQVDVVAYG 42 (371)
T ss_pred CCCccEEEEEEe--cCCCCCHHHHHHHHHHHh-cCCceEEEEEec
Confidence 6644 4577766 667888889999999999 875 79999754
No 85
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.95 E-value=80 Score=22.96 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=36.6
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhh
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQ 50 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~ 50 (247)
+||+...++-.|-.-..-++..|.. +|++|.+.......+.+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~-~G~~vi~lG~~vp~e~~~ 43 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRD-AGFEVIYTGLRQTPEEIV 43 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHH
Confidence 5899999999999999888888888 999999998765555444
No 86
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=53.48 E-value=27 Score=31.77 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=28.6
Q ss_pred CceEEEecc----CC-cCChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 5 NEHIVMLPF----MA-HGHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 5 ~~hvv~~p~----p~-~GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
+.||+++-- +. -|=-+=+.+|++.|.+ +||+|+++++..
T Consensus 58 ~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~-~G~eV~vlt~~~ 101 (465)
T PLN02871 58 PRRIALFVEPSPFSYVSGYKNRFQNFIRYLRE-MGDEVLVVTTDE 101 (465)
T ss_pred CceEEEEECCcCCcccccHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 458888732 22 2334567899999999 999999999754
No 87
>PRK05636 replicative DNA helicase; Provisional
Probab=52.55 E-value=86 Score=29.24 Aligned_cols=43 Identities=12% Similarity=0.029 Sum_probs=34.4
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhh
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQ 50 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~ 50 (247)
+++-.-|+.|=..=.+++|...+.++|..|-|++.+.....+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~ 310 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIV 310 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHH
Confidence 5677789999999999999988852688999998887665544
No 88
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=51.44 E-value=18 Score=30.90 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.8
Q ss_pred CcCChHHHHHHHHHHHhcCCCeEEEEeCC
Q 036900 15 AHGHLIPFLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 15 ~~GHi~P~l~La~~La~~~G~~VT~~~t~ 43 (247)
.-|+.....+|++.|.. +||+|++++..
T Consensus 11 ~gG~~~~~~~l~~~L~~-~g~~v~v~~~~ 38 (360)
T cd04951 11 LGGAEKQVVDLADQFVA-KGHQVAIISLT 38 (360)
T ss_pred CCCHHHHHHHHHHhccc-CCceEEEEEEe
Confidence 35889999999999999 99999999753
No 89
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=51.22 E-value=60 Score=27.72 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCeEEEEeCC
Q 036900 22 FLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 22 ~l~La~~La~~~G~~VT~~~t~ 43 (247)
-+.|++.|+. +|++|+.+-.+
T Consensus 13 ~~~~~~~l~~-~g~~v~~~g~~ 33 (287)
T TIGR02853 13 QLELIRKLEE-LDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHH-CCCEEEEEecc
Confidence 3679999999 99999999765
No 90
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=50.29 E-value=89 Score=22.12 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhh
Q 036900 18 HLIPFLALARQIHQSTGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 18 Hi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~ 51 (247)
+=.=++.+++.|.+ .|++| +.|+.....+..
T Consensus 11 ~k~~~~~~~~~l~~-~G~~l--~aT~gT~~~l~~ 41 (110)
T cd01424 11 DKPEAVEIAKRLAE-LGFKL--VATEGTAKYLQE 41 (110)
T ss_pred cHhHHHHHHHHHHH-CCCEE--EEchHHHHHHHH
Confidence 34457899999999 99986 566666666554
No 91
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=49.94 E-value=27 Score=27.20 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=24.5
Q ss_pred CcCChHHHHHHHHHHHhcCCCeEEEEe
Q 036900 15 AHGHLIPFLALARQIHQSTGFKITIAN 41 (247)
Q Consensus 15 ~~GHi~P~l~La~~La~~~G~~VT~~~ 41 (247)
.-|+-.....|++.|.+ +|++|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~-~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALAR-RGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHH-cCCeEEEEE
Confidence 56999999999999999 999999998
No 92
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=48.08 E-value=40 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=24.3
Q ss_pred cCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 16 HGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 16 ~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
-|...-+.+|++.|++ +|++|++++....
T Consensus 13 gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 41 (348)
T cd03820 13 GGAERVLSNLANALAE-KGHEVTIISLDKG 41 (348)
T ss_pred CChHHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 4666678899999999 9999999988654
No 93
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=47.50 E-value=35 Score=28.99 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=25.9
Q ss_pred CcCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 15 AHGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 15 ~~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
.-|.-.-..+|++.|.. +|++|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAA-RGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHh-CCCceEEEecCCC
Confidence 44788888999999999 9999999988654
No 94
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.41 E-value=81 Score=26.42 Aligned_cols=50 Identities=22% Similarity=0.103 Sum_probs=34.3
Q ss_pred HHHHHHHhhhhcCCCCCcEEEeccccc--chHHHHHHhCCceEEeccccHHHHHH
Q 036900 108 PLYNLLMGIKEKEGKPPICIITDIFFG--WAVDVAKSAGTTNVTFSTGGGYGTLA 160 (247)
Q Consensus 108 ~l~~ll~~~~~~~~~~~~~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~~~~~ 160 (247)
.+.++.+.+.+ .++.||+++.... .+..+|++.|++.+.+-+.+...+..
T Consensus 205 ~l~~l~~~ik~---~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~ 256 (266)
T cd01018 205 DLKRLIDLAKE---KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEEN 256 (266)
T ss_pred HHHHHHHHHHH---cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHH
Confidence 44455544442 4689999998765 45789999999998887765443333
No 95
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.37 E-value=1e+02 Score=27.48 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=44.1
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcc--hHHhhhhcCCCCCCCCCccceeEEecCCC
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLN--IQYLQNTISCNNPNSSEKFNINLVELPFC 74 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~--~~~~~~~~~~~~~~~~~~~~i~~~~lp~~ 74 (247)
++.|++++-..-.||--=|--=|.-||. .|++|+++.--.. ++.+-. +|+|+++.++.+
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~-~gf~VdliGy~~s~p~e~l~~-----------hprI~ih~m~~l 71 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAK-LGFQVDLIGYVESIPLEELLN-----------HPRIRIHGMPNL 71 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHH-cCCeEEEEEecCCCChHHHhc-----------CCceEEEeCCCC
Confidence 4568888888888998888888999999 9999999864322 222221 289999998843
No 96
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=45.61 E-value=37 Score=28.49 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=38.8
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhhhc
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQNTI 53 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~ 53 (247)
-++++--||.|=..=...+|..|.. +|++|+|++++.....++...
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLK-AGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHHHHHHHHHHHH
Confidence 4788888888887788899999998 999999999988877776543
No 97
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=44.92 E-value=1.7e+02 Score=23.74 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=28.9
Q ss_pred eEEEecc-CCcCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 7 HIVMLPF-MAHGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 7 hvv~~p~-p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
.+-++.- ...|-..=+++-+++..- +|-.|.++++...
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~iD 43 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAID 43 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEecccc
Confidence 3444444 455889999999999999 9999999887544
No 98
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=42.93 E-value=47 Score=27.57 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=26.6
Q ss_pred CCcCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 14 MAHGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 14 p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
+.-|+-.-+.+|++.|.+ .|++|++++....
T Consensus 10 ~~gG~~~~~~~l~~~l~~-~g~~v~v~~~~~~ 40 (353)
T cd03811 10 GGGGAERVLLNLANGLDK-RGYDVTLVVLRDE 40 (353)
T ss_pred cCCCcchhHHHHHHHHHh-cCceEEEEEcCCC
Confidence 356888899999999999 9999999987543
No 99
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=42.00 E-value=44 Score=28.48 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 17 GHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 17 GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
|=-.=..+|++.|.. +||+|++++....
T Consensus 16 G~~~~~~~la~~L~~-~g~~v~v~~~~~~ 43 (363)
T cd04955 16 GFETFVEELAPRLVA-RGHEVTVYCRSPY 43 (363)
T ss_pred cHHHHHHHHHHHHHh-cCCCEEEEEccCC
Confidence 434556799999999 9999999987543
No 100
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=41.98 E-value=42 Score=28.59 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=30.3
Q ss_pred eEEEeccC-C-cCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 7 HIVMLPFM-A-HGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 7 hvv~~p~p-~-~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
+|+++... + -|+-.=...|++.|.+ +||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~-~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQA-AGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHh-cCCceeEEEeecc
Confidence 45666543 3 5888999999999999 9999999987654
No 101
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=41.74 E-value=18 Score=27.32 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=16.2
Q ss_pred CCcCChHHHHHHHHHHHh
Q 036900 14 MAHGHLIPFLALARQIHQ 31 (247)
Q Consensus 14 p~~GHi~P~l~La~~La~ 31 (247)
|-+|-.||+|+|+-.|+=
T Consensus 57 pe~G~tNPFLHlsmHLsI 74 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSI 74 (137)
T ss_pred cccCccchhHHHHHHHHH
Confidence 678999999999999876
No 102
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=40.35 E-value=41 Score=26.86 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCC
Q 036900 23 LALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPF 73 (247)
Q Consensus 23 l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 73 (247)
-+|+.+|++ +|++||+.....+...-.. . ..+++.+.+|.
T Consensus 24 e~L~~~l~~-~g~~v~Vyc~~~~~~~~~~----~------y~gv~l~~i~~ 63 (185)
T PF09314_consen 24 EELAPRLVS-KGIDVTVYCRSDYYPYKEF----E------YNGVRLVYIPA 63 (185)
T ss_pred HHHHHHHhc-CCceEEEEEccCCCCCCCc----c------cCCeEEEEeCC
Confidence 368888888 9999999876544321110 0 14788888874
No 103
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=40.02 E-value=71 Score=26.69 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=26.4
Q ss_pred CCcCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 14 MAHGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 14 p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
..-|+-..+.+|++.|.. .|+.|.+++....
T Consensus 10 ~~gG~~~~~~~l~~~l~~-~~~~v~~~~~~~~ 40 (365)
T cd03807 10 DVGGAERMLVRLLKGLDR-DRFEHVVISLTDR 40 (365)
T ss_pred cCccHHHHHHHHHHHhhh-ccceEEEEecCcc
Confidence 346899999999999999 9999999987544
No 104
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=39.68 E-value=49 Score=21.84 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 21 PFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 21 P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
--+++|..|+. .|.+||++....
T Consensus 10 ig~E~A~~l~~-~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAE-LGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHH-TTSEEEEEESSS
T ss_pred HHHHHHHHHHH-hCcEEEEEeccc
Confidence 34799999999 999999998643
No 105
>PLN02891 IMP cyclohydrolase
Probab=39.52 E-value=1.1e+02 Score=28.80 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCC
Q 036900 22 FLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPP 82 (247)
Q Consensus 22 ~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~ 82 (247)
+.+||+.|.+ .|++ +++|......++. .+|....+.. ..|+|+
T Consensus 35 i~~fAk~L~~-~gve--IiSTgGTak~L~e------------~Gi~v~~Vsd---~TgfPE 77 (547)
T PLN02891 35 LALLANGLQE-LGYT--IVSTGGTASALEA------------AGVSVTKVEE---LTNFPE 77 (547)
T ss_pred HHHHHHHHHH-CCCE--EEEcchHHHHHHH------------cCCceeeHHh---ccCCch
Confidence 6899999999 8765 6888888777765 4677776653 246665
No 106
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=39.39 E-value=39 Score=27.85 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=20.9
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 17 GHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 17 GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
-|+..|-+.|..|.+ +|++|+++....
T Consensus 46 l~~saMRhfa~~L~~-~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRA-KGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHH-TT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCC
Confidence 367889999999999 999999999874
No 107
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=39.34 E-value=62 Score=27.22 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 17 GHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 17 GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
|--.-..+|++.|.+ +||+|++++...
T Consensus 20 G~~~~~~~l~~~L~~-~g~~V~v~~~~~ 46 (335)
T cd03802 20 GTERVVAALTEGLVA-RGHEVTLFASGD 46 (335)
T ss_pred cHHHHHHHHHHHHHh-cCceEEEEecCC
Confidence 445668899999999 999999999753
No 108
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=38.79 E-value=1.3e+02 Score=28.17 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCCcchHHhhh
Q 036900 21 PFLALARQIHQSTGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 21 P~l~La~~La~~~G~~VT~~~t~~~~~~~~~ 51 (247)
=+++||+.|.. .|++| +.|......++.
T Consensus 16 ~iv~lAk~L~~-lGfeI--~AT~GTak~L~e 43 (513)
T PRK00881 16 GIVEFAKALVE-LGVEI--LSTGGTAKLLAE 43 (513)
T ss_pred cHHHHHHHHHH-CCCEE--EEcchHHHHHHH
Confidence 36799999999 99986 577777777665
No 109
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=37.78 E-value=48 Score=28.49 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=30.0
Q ss_pred CCCCCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 1 MGSENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 1 m~~~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
|.+++.+|.++-..+.| .-||.+|++ .|++||++.-..
T Consensus 1 ~~~~~m~I~IiG~GaiG-----~~lA~~L~~-~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIG-----GFYGAMLAR-AGFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECCCHHH-----HHHHHHHHH-CCCeEEEEEeCC
Confidence 66677789998666666 457889999 999999997643
No 110
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=37.65 E-value=58 Score=27.88 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEecccccc-----hHHHHHHhCCceEEecccc
Q 036900 107 TPLYNLLMGIKEKEGKPPICIITDIFFGW-----AVDVAKSAGTTNVTFSTGG 154 (247)
Q Consensus 107 ~~l~~ll~~~~~~~~~~~~~vI~D~~~~~-----~~~vA~~lgiP~v~f~~~~ 154 (247)
++++++++++-++ ..++-+||-|.|.-- ..+.|.+-|||+|.+.-..
T Consensus 133 p~IKE~vR~~I~~-A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 133 PHIKEVVRRMIQQ-AQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred CCHHHHHHHHHHH-hcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 4556666654322 246899999998752 3577889999999977644
No 111
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=37.25 E-value=4.3 Score=22.75 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=14.6
Q ss_pred eccCCcCChHHHHHHHHHHHh
Q 036900 11 LPFMAHGHLIPFLALARQIHQ 31 (247)
Q Consensus 11 ~p~p~~GHi~P~l~La~~La~ 31 (247)
=.||+||-.||-+++---|-.
T Consensus 16 PTFPGqGP~NPKir~Pyplpn 36 (39)
T PF08026_consen 16 PTFPGQGPFNPKIRWPYPLPN 36 (39)
T ss_pred CcCCCCCCCCccccccccCCC
Confidence 358999999997766444433
No 112
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=36.41 E-value=58 Score=23.92 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=30.0
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhh
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~ 51 (247)
||++.-..+.+=.. ..++.++|.+ +|++|+++-|+.-.+.+..
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~-~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKR-AGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHT-TTSEEEEEESHHHHHHSHH
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhh-CCCEEEEEECCcHHHHhhh
Confidence 45555444444444 8999999999 9999999999765544443
No 113
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=36.39 E-value=61 Score=25.74 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEecccccc--hHHHHHHhCCceEEecccc
Q 036900 107 TPLYNLLMGIKEKEGKPPICIITDIFFGW--AVDVAKSAGTTNVTFSTGG 154 (247)
Q Consensus 107 ~~l~~ll~~~~~~~~~~~~~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~ 154 (247)
+.++.+++... ++.-+|.|.|++. +..+|.++|-.++.+=...
T Consensus 179 ~l~~~lI~~~t-----~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 179 ELIERLIKAST-----NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp HHHHHHHHHHS------TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred HHHHHHHHhhh-----ccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 34566665532 4677999999975 3678899998877664443
No 114
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=36.34 E-value=66 Score=24.52 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=34.7
Q ss_pred CCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 4 ENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 4 ~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
.+++|++.+...-||=.=.--+++.|++ .|++|.......
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d-~GfeVi~~g~~~ 50 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALAD-AGFEVINLGLFQ 50 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHh-CCceEEecCCcC
Confidence 5789999999988999999999999999 999987765443
No 115
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=36.22 E-value=1e+02 Score=21.88 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=34.9
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhh
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQ 50 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~ 50 (247)
+++....++..|-....-++..|.+ .|+++.++........+.
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~-~G~~v~~l~~~~~~~~~~ 43 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRD-NGFEVIDLGVDVPPEEIV 43 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHH-CCCEEEEcCCCCCHHHHH
Confidence 3677778889999999999999999 999999997655544443
No 116
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=35.32 E-value=65 Score=26.78 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=26.1
Q ss_pred cCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 16 HGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 16 ~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
-|+-.-+..|++.|.+ .|++|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~-~g~~v~i~~~~~~ 42 (374)
T cd03801 14 GGAERHVLELARALAA-RGHEVTVLTPGDG 42 (374)
T ss_pred CcHhHHHHHHHHHHHh-cCceEEEEecCCC
Confidence 6899999999999999 9999999997644
No 117
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=35.18 E-value=65 Score=26.16 Aligned_cols=45 Identities=7% Similarity=0.065 Sum_probs=28.9
Q ss_pred HHHHHHHhhhhcC-CCCCcEEEecccccchHHHHHHhCCceEEecc
Q 036900 108 PLYNLLMGIKEKE-GKPPICIITDIFFGWAVDVAKSAGTTNVTFST 152 (247)
Q Consensus 108 ~l~~ll~~~~~~~-~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~ 152 (247)
.++.+++...+.. ...+.+||+|-=-..+.+.|++.|||++.+-.
T Consensus 12 n~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 12 NFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred hHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 3445555443211 12457899986444568999999999987644
No 118
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=34.60 E-value=82 Score=21.06 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=26.7
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEE
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIA 40 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~ 40 (247)
-+|++-=....|..=+-+||+.|++ +|+.|...
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~-~G~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAE-QGYAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence 4556656667999999999999999 99987654
No 119
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=34.21 E-value=46 Score=26.47 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=18.8
Q ss_pred cCCcCChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 13 FMAHGHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 13 ~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
-.+.|.+- ..||+.+.. +|++||++..+.
T Consensus 25 N~SSG~~G--~~lA~~~~~-~Ga~V~li~g~~ 53 (185)
T PF04127_consen 25 NRSSGKMG--AALAEEAAR-RGAEVTLIHGPS 53 (185)
T ss_dssp ES--SHHH--HHHHHHHHH-TT-EEEEEE-TT
T ss_pred CCCcCHHH--HHHHHHHHH-CCCEEEEEecCc
Confidence 34444433 468899999 999999999863
No 120
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=33.58 E-value=4 Score=37.53 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=13.7
Q ss_pred CcEEEecccccchHHHHHHhCCceEE
Q 036900 124 PICIITDIFFGWAVDVAKSAGTTNVT 149 (247)
Q Consensus 124 ~~~vI~D~~~~~~~~vA~~lgiP~v~ 149 (247)
+|++|+|.|..++..+|+.+|+|.+.
T Consensus 120 fDlvI~d~f~~c~~~la~~l~iP~i~ 145 (500)
T PF00201_consen 120 FDLVISDAFDPCGLALAHYLGIPVII 145 (500)
T ss_dssp HCT-EEEEEESSHHHHHHHHHHTHHH
T ss_pred cccceEeeccchhHHHHHHhcCCeEE
Confidence 45555555555455555555555543
No 121
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=33.35 E-value=1.4e+02 Score=26.30 Aligned_cols=33 Identities=15% Similarity=-0.012 Sum_probs=20.7
Q ss_pred CCCcEEE-ecc--cccchHHHHHHh--CCceEEecccc
Q 036900 122 KPPICII-TDI--FFGWAVDVAKSA--GTTNVTFSTGG 154 (247)
Q Consensus 122 ~~~~~vI-~D~--~~~~~~~vA~~l--giP~v~f~~~~ 154 (247)
.+|||+| .|+ |..+...-+++. |||.+.|.+-.
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~Pq 112 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQ 112 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc
Confidence 3688754 575 223455666777 79988765543
No 122
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=33.05 E-value=65 Score=27.57 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhhcC-CCCCcEEEecccccchHHHHHHhCCceEEec
Q 036900 107 TPLYNLLMGIKEKE-GKPPICIITDIFFGWAVDVAKSAGTTNVTFS 151 (247)
Q Consensus 107 ~~l~~ll~~~~~~~-~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~ 151 (247)
..+++++....... ...+.+||+|- .-+..+|+++|||++.+-
T Consensus 101 ~nl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 101 HCLNDLLYRWRIGELPMDIVGVVSNH--PDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ccHHHHHHHHHcCCCCcEEEEEEECC--ccHHHHHHHhCCCEEEeC
Confidence 45777776654321 13467888874 346777999999999864
No 123
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=32.95 E-value=2.5e+02 Score=22.21 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=47.9
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcC--CCeEEEEeCCcchHH-hhhhcCCCCCCCCCccceeEEecCCCCCCCCCCCC
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQST--GFKITIANTPLNIQY-LQNTISCNNPNSSEKFNINLVELPFCSSDHGLPPN 83 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~--G~~VT~~~t~~~~~~-~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~ 83 (247)
.++-+-....|=++-...|.++|.. + |+.|.+-++...... ..+... +.+....+|.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~-~~p~~~illT~~T~tg~~~~~~~~~---------~~v~~~~~P~D--------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRK-QRPDLRILLTTTTPTGREMARKLLP---------DRVDVQYLPLD--------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT----TS-EEEEES-CCHHHHHHGG-G---------GG-SEEE---S---------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHH-hCCCCeEEEEecCCchHHHHHHhCC---------CCeEEEEeCcc---------
Confidence 4666667788999999999999998 5 888777665444333 222211 23444445521
Q ss_pred CCCccCcchhhHHHHHHHHHhchHHHHHHHHhhhhcCCCCCcEEEecccccch--HHHHHHhCCceEEecc
Q 036900 84 TENTENLSFDLIINFFASSQSLKTPLYNLLMGIKEKEGKPPICIITDIFFGWA--VDVAKSAGTTNVTFST 152 (247)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~--~~vA~~lgiP~v~f~~ 152 (247)
. ...++.+++.+. |+++|.=---.|- ...|++.|||.+....
T Consensus 83 ------~---------------~~~~~rfl~~~~------P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ------F---------------PWAVRRFLDHWR------PDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ------S---------------HHHHHHHHHHH--------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ------C---------------HHHHHHHHHHhC------CCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 0 112455666663 6655443334564 6788899999998665
No 124
>PRK00654 glgA glycogen synthase; Provisional
Probab=32.56 E-value=71 Score=29.11 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 17 GHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 17 GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
|.-.=.-.|++.|++ +||+|+++++..
T Consensus 18 Gl~~~v~~L~~~L~~-~G~~V~v~~p~y 44 (466)
T PRK00654 18 GLGDVVGALPKALAA-LGHDVRVLLPGY 44 (466)
T ss_pred cHHHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 333444689999999 999999999753
No 125
>PRK04940 hypothetical protein; Provisional
Probab=31.82 E-value=1.2e+02 Score=24.05 Aligned_cols=35 Identities=17% Similarity=-0.003 Sum_probs=26.5
Q ss_pred CcEEEecccc-cchHHHHHHhCCceEEeccccHHHH
Q 036900 124 PICIITDIFF-GWAVDVAKSAGTTNVTFSTGGGYGT 158 (247)
Q Consensus 124 ~~~vI~D~~~-~~~~~vA~~lgiP~v~f~~~~a~~~ 158 (247)
+.+||--.+- .||.-+|+++|+|.|...++--...
T Consensus 61 ~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P~~ 96 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFPEE 96 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHHCCCEEEECCCCChHH
Confidence 4566655544 3899999999999999998765543
No 126
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=31.65 E-value=1.2e+02 Score=28.36 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCcchHHhhhhcCCCCCCCCCccceeEEecCCCCCCCCCCC
Q 036900 22 FLALARQIHQSTGFKITIANTPLNIQYLQNTISCNNPNSSEKFNINLVELPFCSSDHGLPP 82 (247)
Q Consensus 22 ~l~La~~La~~~G~~VT~~~t~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~ 82 (247)
+.+|++.|.. .|++| +.|......++. .+|....+.. ..|.|+
T Consensus 13 iv~lAk~L~~-lGfeI--iATgGTak~L~e------------~GI~v~~Vsk---~TgfPE 55 (511)
T TIGR00355 13 IVEFAQGLVE-RGVEL--LSTGGTAKLLAE------------AGVPVTEVSD---YTGFPE 55 (511)
T ss_pred HHHHHHHHHH-CCCEE--EEechHHHHHHH------------CCCeEEEeec---ccCCch
Confidence 5789999999 99987 577777777665 3566655542 246665
No 127
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=31.22 E-value=43 Score=30.38 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCc
Q 036900 22 FLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 22 ~l~La~~La~~~G~~VT~~~t~~ 44 (247)
.-.|++.|++ +||+|+++++..
T Consensus 22 ~~~L~~aL~~-~G~~V~Vi~p~y 43 (476)
T cd03791 22 VGALPKALAK-LGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHH-CCCeEEEEecCC
Confidence 3579999999 999999999754
No 128
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=31.18 E-value=41 Score=27.88 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 21 PFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 21 P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
=.-.|+|.|+. +|++|+++++..
T Consensus 21 v~~~L~kaL~~-~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAK-QGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHH-TT-EEEEEEE-T
T ss_pred HHHHHHHHHHh-cCCeEEEEEccc
Confidence 34579999999 999999999865
No 129
>PTZ00445 p36-lilke protein; Provisional
Probab=31.09 E-value=53 Score=26.93 Aligned_cols=28 Identities=18% Similarity=0.414 Sum_probs=23.1
Q ss_pred CChHH-HHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 17 GHLIP-FLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 17 GHi~P-~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
+|+.| +..|.++|.. .|+.|+++|-...
T Consensus 74 ~~~tpefk~~~~~l~~-~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKN-SNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHH-CCCeEEEEEccch
Confidence 56777 8889999999 9999999986443
No 130
>PLN02650 dihydroflavonol-4-reductase
Probab=30.86 E-value=84 Score=27.21 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=27.1
Q ss_pred CCCCCceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEe
Q 036900 1 MGSENEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIAN 41 (247)
Q Consensus 1 m~~~~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~ 41 (247)
|++.+.+|++ ..+.|.+- -+|+++|++ +|++|+.+.
T Consensus 1 ~~~~~k~iLV--TGatGfIG--s~l~~~L~~-~G~~V~~~~ 36 (351)
T PLN02650 1 MGSQKETVCV--TGASGFIG--SWLVMRLLE-RGYTVRATV 36 (351)
T ss_pred CCCCCCEEEE--eCCcHHHH--HHHHHHHHH-CCCEEEEEE
Confidence 8887778877 44556554 368899999 999998765
No 131
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=30.26 E-value=1.2e+02 Score=26.79 Aligned_cols=29 Identities=28% Similarity=0.228 Sum_probs=21.9
Q ss_pred CCcEEEecccccc----------hHHHHHHhCCceEEec
Q 036900 123 PPICIITDIFFGW----------AVDVAKSAGTTNVTFS 151 (247)
Q Consensus 123 ~~~~vI~D~~~~~----------~~~vA~~lgiP~v~f~ 151 (247)
.+|++|+-..+.. +..|.+++|||.++-.
T Consensus 80 ~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 80 KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 5899999987653 2347779999998743
No 132
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=29.86 E-value=93 Score=25.09 Aligned_cols=40 Identities=8% Similarity=0.012 Sum_probs=29.3
Q ss_pred CceEEEeccCCcCChHH-HHHHHHHHHhcCCCeEEEEeCCcch
Q 036900 5 NEHIVMLPFMAHGHLIP-FLALARQIHQSTGFKITIANTPLNI 46 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P-~l~La~~La~~~G~~VT~~~t~~~~ 46 (247)
..+|+ +-..|-....- ..+|.++|.+ +|++|+++.|+.-.
T Consensus 5 ~k~Il-lgVTGsiaa~k~a~~lir~L~k-~G~~V~vv~T~aA~ 45 (196)
T PRK08305 5 GKRIG-FGLTGSHCTYDEVMPEIEKLVD-EGAEVTPIVSYTVQ 45 (196)
T ss_pred CCEEE-EEEcCHHHHHHHHHHHHHHHHh-CcCEEEEEECHhHH
Confidence 33554 44455555666 6899999999 99999999987544
No 133
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=29.85 E-value=70 Score=20.60 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCCCeEEEEeCC
Q 036900 23 LALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 23 l~La~~La~~~G~~VT~~~t~ 43 (247)
|..|..|++ +|++||++-..
T Consensus 9 l~aA~~L~~-~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAK-AGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHH-TTSEEEEEESS
T ss_pred HHHHHHHHH-CCCcEEEEecC
Confidence 567899999 99999999754
No 134
>PHA02542 41 41 helicase; Provisional
Probab=29.43 E-value=74 Score=29.38 Aligned_cols=45 Identities=24% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEecccccchHH----------------------HHHHhCCceEEec
Q 036900 107 TPLYNLLMGIKEKEGKPPICIITDIFFGWAVD----------------------VAKSAGTTNVTFS 151 (247)
Q Consensus 107 ~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~----------------------vA~~lgiP~v~f~ 151 (247)
..++..++++....+.++++||.|++-.-... +|++++||+++..
T Consensus 285 ~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~ls 351 (473)
T PHA02542 285 GHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAA 351 (473)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEEE
No 135
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=29.05 E-value=1.4e+02 Score=21.21 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=28.9
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcch
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNI 46 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~ 46 (247)
-+++-+...|+-..++++.+.+.+ +|..|..+|.....
T Consensus 55 d~vi~is~sg~~~~~~~~~~~ak~-~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 55 DLVIIISYSGETRELIELLRFAKE-RGAPVILITSNSES 92 (131)
T ss_dssp EEEEEEESSSTTHHHHHHHHHHHH-TTSEEEEEESSTTS
T ss_pred ceeEeeeccccchhhhhhhHHHHh-cCCeEEEEeCCCCC
Confidence 344444478899999999998888 99999777765443
No 136
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=29.03 E-value=94 Score=25.92 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=26.4
Q ss_pred CcCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 15 AHGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 15 ~~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
..|+-.-+..+++.|.. .|++|++++....
T Consensus 13 ~~g~~~~~~~~~~~l~~-~g~~v~v~~~~~~ 42 (377)
T cd03798 13 NGGGGIFVKELARALAK-RGVEVTVLAPGPW 42 (377)
T ss_pred CchHHHHHHHHHHHHHH-CCCceEEEecCCC
Confidence 47888889999999999 9999999987644
No 137
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=28.96 E-value=1.3e+02 Score=22.72 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.6
Q ss_pred CCcCChHHHHHHHHHHHhcCCCeEEEE
Q 036900 14 MAHGHLIPFLALARQIHQSTGFKITIA 40 (247)
Q Consensus 14 p~~GHi~P~l~La~~La~~~G~~VT~~ 40 (247)
++-|-..=.+.|++.|++ +|.+|-++
T Consensus 7 ~~~GKT~va~~L~~~l~~-~g~~V~~~ 32 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKK-AGYSVGYY 32 (166)
T ss_pred CCccHHHHHHHHHHHHHH-CCCcEEEE
Confidence 566788888999999999 99999886
No 138
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=28.52 E-value=57 Score=22.55 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCcchHHhhh
Q 036900 22 FLALARQIHQSTGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 22 ~l~La~~La~~~G~~VT~~~t~~~~~~~~~ 51 (247)
++++||+|++ .|++ ++.|......+++
T Consensus 2 ~~~~a~~l~~-lG~~--i~AT~gTa~~L~~ 28 (95)
T PF02142_consen 2 IVPLAKRLAE-LGFE--IYATEGTAKFLKE 28 (95)
T ss_dssp HHHHHHHHHH-TTSE--EEEEHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCE--EEEChHHHHHHHH
Confidence 5789999999 9964 6888888777765
No 139
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=28.51 E-value=1.7e+02 Score=27.42 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=33.0
Q ss_pred hHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceEEeccc
Q 036900 106 KTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNVTFSTG 153 (247)
Q Consensus 106 ~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 153 (247)
...++..+..+.+ .++++||.|.. +.+.|+++|++.+.....
T Consensus 131 ~~e~~~~~~~l~~---~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 131 EEDARSCVNDLRA---RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHH---CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 3566777777654 46999999985 689999999999987664
No 140
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=28.21 E-value=1.6e+02 Score=23.10 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=20.6
Q ss_pred hchHHHHHHHHhh-hhcCCCCCcEEEecccccch---HHHHHHhC
Q 036900 104 SLKTPLYNLLMGI-KEKEGKPPICIITDIFFGWA---VDVAKSAG 144 (247)
Q Consensus 104 ~~~~~l~~ll~~~-~~~~~~~~~~vI~D~~~~~~---~~vA~~lg 144 (247)
.+...+.++|++- .-..+.++.|||+|...+-. ...|++|.
T Consensus 29 ~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~ 73 (171)
T PF07881_consen 29 NMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFK 73 (171)
T ss_dssp HHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHH
Confidence 3445555666553 21235678999999987653 45677774
No 141
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=28.13 E-value=81 Score=21.45 Aligned_cols=27 Identities=22% Similarity=0.536 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCcchHHhhh
Q 036900 22 FLALARQIHQSTGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 22 ~l~La~~La~~~G~~VT~~~t~~~~~~~~~ 51 (247)
++++++.|++ .|++| +.|......++.
T Consensus 2 ~~~~~~~l~~-lG~~i--~AT~gTa~~L~~ 28 (90)
T smart00851 2 LVELAKRLAE-LGFEL--VATGGTAKFLRE 28 (90)
T ss_pred HHHHHHHHHH-CCCEE--EEccHHHHHHHH
Confidence 5689999999 99986 566666655553
No 142
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.01 E-value=65 Score=29.08 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=20.7
Q ss_pred cCChHHHHHHHHHHHhcCCCeEEEEeCC
Q 036900 16 HGHLIPFLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 16 ~GHi~P~l~La~~La~~~G~~VT~~~t~ 43 (247)
-||+.|++.|. +|.. .||+|+++...
T Consensus 48 lGhlv~l~kL~-~fQ~-aGh~~ivLigd 73 (401)
T COG0162 48 LGHLVPLMKLR-RFQD-AGHKPIVLIGD 73 (401)
T ss_pred hhhHHHHHHHH-HHHH-CCCeEEEEecc
Confidence 39999998885 5666 79999998654
No 143
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=27.73 E-value=58 Score=24.05 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=21.0
Q ss_pred CCCcEEEeccccc--chHHHHHHhCCceEEecccc
Q 036900 122 KPPICIITDIFFG--WAVDVAKSAGTTNVTFSTGG 154 (247)
Q Consensus 122 ~~~~~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~ 154 (247)
.+|.+||++.+.. +..++|++.|+|....--.+
T Consensus 81 ~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~~t 115 (127)
T PF02603_consen 81 NPPCIIVTRGLEPPPELIELAEKYNIPLLRTPLST 115 (127)
T ss_dssp T-S-EEEETTT---HHHHHHHHHCT--EEEESS-H
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCCcH
Confidence 4678899998774 67899999999988755433
No 144
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.65 E-value=1.2e+02 Score=22.78 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=25.9
Q ss_pred EEEeccCCc-CChHHHHHHHHHHHhcCCCeEEEEeCC
Q 036900 8 IVMLPFMAH-GHLIPFLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 8 vv~~p~p~~-GHi~P~l~La~~La~~~G~~VT~~~t~ 43 (247)
+|++-.|-. -.+...+-|+.+|-. +|++||+..++
T Consensus 6 lv~lGCPeiP~qissaiYls~klkk-kgf~v~Vaate 41 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKK-KGFDVTVAATE 41 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhc-cCccEEEecCH
Confidence 455555544 345556788999999 99999999875
No 145
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.27 E-value=1.2e+02 Score=20.38 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=26.2
Q ss_pred eEEEeccCCc--CChHHHHHHHHHHHhcCCCeEEEEe
Q 036900 7 HIVMLPFMAH--GHLIPFLALARQIHQSTGFKITIAN 41 (247)
Q Consensus 7 hvv~~p~p~~--GHi~P~l~La~~La~~~G~~VT~~~ 41 (247)
+|+++|.... .+..-.+++++.|.. .|+.|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEEC
Confidence 6889987653 456677888899888 899987754
No 146
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=27.11 E-value=94 Score=20.76 Aligned_cols=30 Identities=17% Similarity=-0.003 Sum_probs=20.8
Q ss_pred CCcEEEecccc--cchHHHHHHhCCceEEecc
Q 036900 123 PPICIITDIFF--GWAVDVAKSAGTTNVTFST 152 (247)
Q Consensus 123 ~~~~vI~D~~~--~~~~~vA~~lgiP~v~f~~ 152 (247)
.+..||++.-- +.+.-+|+++|||.++=..
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 36677777544 3467899999999987554
No 147
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=27.10 E-value=1.4e+02 Score=26.01 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=41.2
Q ss_pred CCCCCceEEEeccCCcCChHHHHHHHHHHHhc-CCCeEEEEeCCcchHHhh
Q 036900 1 MGSENEHIVMLPFMAHGHLIPFLALARQIHQS-TGFKITIANTPLNIQYLQ 50 (247)
Q Consensus 1 m~~~~~hvv~~p~p~~GHi~P~l~La~~La~~-~G~~VT~~~t~~~~~~~~ 50 (247)
|.....+|+++-.-+.|-+.=.+.+.+.|.++ -+.+||+++.+.+.+-++
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~ 51 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILS 51 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhc
Confidence 66555689999999999999999999999983 389999999887665433
No 148
>PLN02828 formyltetrahydrofolate deformylase
Probab=26.99 E-value=1.1e+02 Score=25.87 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhhcC-CCCCcEEEeccc---ccchHHHHHHhCCceEEecc
Q 036900 107 TPLYNLLMGIKEKE-GKPPICIITDIF---FGWAVDVAKSAGTTNVTFST 152 (247)
Q Consensus 107 ~~l~~ll~~~~~~~-~~~~~~vI~D~~---~~~~~~vA~~lgiP~v~f~~ 152 (247)
..+.+++.+..... ...+.+||++-- -..+...|+++|||.+++-.
T Consensus 82 ~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 82 HCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred hhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 56777777654321 124678898862 22567899999999986654
No 149
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=26.93 E-value=1.7e+02 Score=21.08 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=33.0
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
||++.--++.|=......|++.|+. +|.+|-++.++.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~-~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAE-KGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCc
Confidence 5778888999999999999999999 999999988875
No 150
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=26.62 E-value=64 Score=28.81 Aligned_cols=26 Identities=35% Similarity=0.685 Sum_probs=20.6
Q ss_pred cCChHHHHHHHHHHHhcCCCeEEEEeCC
Q 036900 16 HGHLIPFLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 16 ~GHi~P~l~La~~La~~~G~~VT~~~t~ 43 (247)
-||+.|++.| ++|.. .||++.++...
T Consensus 46 lGh~v~l~~l-~~lq~-~G~~~~iligd 71 (377)
T TIGR00234 46 LGHLVPLLKL-RDFQQ-AGHEVIVLLGD 71 (377)
T ss_pred HHHHHHHHHH-HHHHH-CCCcEEEEEec
Confidence 3999997766 67888 89999887653
No 151
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=26.49 E-value=1.4e+02 Score=21.16 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=26.2
Q ss_pred EEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeC
Q 036900 9 VMLPFMAHGHLIPFLALARQIHQSTGFKITIANT 42 (247)
Q Consensus 9 v~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t 42 (247)
+++|.-+..+-..+++.|..|+...+.+|+++..
T Consensus 2 ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v 35 (132)
T cd01988 2 ILVPVANPNTARDLLELAAALARAQNGEIIPLNV 35 (132)
T ss_pred EEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 5677777788888999999999833677777654
No 152
>PLN02846 digalactosyldiacylglycerol synthase
Probab=26.38 E-value=1.1e+02 Score=28.28 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=29.5
Q ss_pred CCceEEEecc---CCc-CChHHHHHHHHHHHhcCC-CeEEEEeCCc
Q 036900 4 ENEHIVMLPF---MAH-GHLIPFLALARQIHQSTG-FKITIANTPL 44 (247)
Q Consensus 4 ~~~hvv~~p~---p~~-GHi~P~l~La~~La~~~G-~~VT~~~t~~ 44 (247)
.+.||.+++- |-. |=..-.+.++..|++ +| |+||++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~-~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAK-DGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHh-cCCcEEEEEecCC
Confidence 4568888864 333 664666777889999 99 7999998753
No 153
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=26.07 E-value=1.5e+02 Score=23.55 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=32.1
Q ss_pred HHHHHHhhhhcCCCCCcEEEeccccc-chHHHHHHhCCceEEeccccHHHHHHH
Q 036900 109 LYNLLMGIKEKEGKPPICIITDIFFG-WAVDVAKSAGTTNVTFSTGGGYGTLAY 161 (247)
Q Consensus 109 l~~ll~~~~~~~~~~~~~vI~D~~~~-~~~~vA~~lgiP~v~f~~~~a~~~~~~ 161 (247)
+++++++.. .+..++|--.+-+ ||.-+|+++|+|.+.+.++-.....+-
T Consensus 49 l~~~i~~~~----~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~~~l~ 98 (187)
T PF05728_consen 49 LEQLIEELK----PENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRPYELLQ 98 (187)
T ss_pred HHHHHHhCC----CCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHHHHHH
Confidence 445555543 1224666665554 678899999999999988766544443
No 154
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=26.05 E-value=90 Score=22.06 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCCcchHHhh
Q 036900 20 IPFLALARQIHQSTGFKITIANTPLNIQYLQ 50 (247)
Q Consensus 20 ~P~l~La~~La~~~G~~VT~~~t~~~~~~~~ 50 (247)
.|.+.|++.|.. +|.+|.+.-+........
T Consensus 17 Sp~~~l~~~L~~-~g~~V~~~DP~v~~~~~~ 46 (106)
T PF03720_consen 17 SPALELIEELKE-RGAEVSVYDPYVDEEEIK 46 (106)
T ss_dssp -HHHHHHHHHHH-TT-EEEEE-TTSHHHHHH
T ss_pred CHHHHHHHHHHH-CCCEEEEECCccChHHHH
Confidence 588999999999 999999987765544443
No 155
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.87 E-value=1.1e+02 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=19.7
Q ss_pred CCcEEEecccccchHHHHHHhCCceEEec
Q 036900 123 PPICIITDIFFGWAVDVAKSAGTTNVTFS 151 (247)
Q Consensus 123 ~~~~vI~D~~~~~~~~vA~~lgiP~v~f~ 151 (247)
+||++|.+. +...+|+++|+|.+.+.
T Consensus 370 ~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 370 EPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred CCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 578888776 46678899999987653
No 156
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=25.63 E-value=1.8e+02 Score=24.09 Aligned_cols=46 Identities=13% Similarity=0.042 Sum_probs=39.6
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHHhhh
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNIQYLQN 51 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~~~~ 51 (247)
+.-+++.-.|+.|..+=.++++...+. +|..|-++++......+..
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLE 68 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHH
Confidence 335778888999999999999999999 9999999999887665554
No 157
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=25.20 E-value=1.3e+02 Score=25.02 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCcCChHHHHHHHHHHHhcCCCeEEEEeCCcchHH
Q 036900 14 MAHGHLIPFLALARQIHQSTGFKITIANTPLNIQY 48 (247)
Q Consensus 14 p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~~~ 48 (247)
.|-|=..-.+-||..|++ +|-+|+++-++.|.+.
T Consensus 11 GGaGKTT~~~~LAs~la~-~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAA-RGARVALIDADPNQPL 44 (231)
T ss_pred CCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCcH
Confidence 577999999999999999 9999999999988653
No 158
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=25.18 E-value=1.7e+02 Score=21.13 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=24.5
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeC
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANT 42 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t 42 (247)
...|+++.+... +...++.++.|.+ .|++++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~-~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEE-EGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHH-cCCceeEEee
Confidence 346777776555 3456788888888 8888888754
No 159
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.91 E-value=1.3e+02 Score=23.24 Aligned_cols=39 Identities=13% Similarity=-0.010 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEecccccc--hHHHHHHhCCceEEecc
Q 036900 107 TPLYNLLMGIKEKEGKPPICIITDIFFGW--AVDVAKSAGTTNVTFST 152 (247)
Q Consensus 107 ~~l~~ll~~~~~~~~~~~~~vI~D~~~~~--~~~vA~~lgiP~v~f~~ 152 (247)
+.+|.+++. +||+||......- ..+--++.|||++.+..
T Consensus 60 ~n~E~ll~l-------~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 60 LNVELIVAL-------KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCHHHHhcc-------CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 566666643 5999988643322 33445788999988753
No 160
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.78 E-value=1.3e+02 Score=27.15 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=25.4
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
+..|+++ |-|+ .-+ .+|+.|+. +|++||++....
T Consensus 5 ~k~v~ii---G~g~-~G~-~~A~~l~~-~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVV---GAGV-SGL-ALAKFLKK-LGAKVILTDEKE 38 (450)
T ss_pred CCEEEEE---CCCH-HHH-HHHHHHHH-CCCEEEEEeCCc
Confidence 3456655 5666 444 99999999 999999987643
No 161
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.64 E-value=1.3e+02 Score=21.42 Aligned_cols=35 Identities=11% Similarity=0.288 Sum_probs=20.5
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCCC-eEEEE
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTGF-KITIA 40 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G~-~VT~~ 40 (247)
+++++.+.+-...|.....++++.+.+ ++. .+.++
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~-~~~~~~~i~ 85 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKE-AGLDDIPVL 85 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHH-cCCCCCeEE
Confidence 455666666656666666666666666 544 44433
No 162
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=24.48 E-value=2.1e+02 Score=21.84 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=33.2
Q ss_pred EEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCCcch
Q 036900 8 IVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTPLNI 46 (247)
Q Consensus 8 vv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~ 46 (247)
+++.--||.|=......|++.++. +|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCC
Confidence 466778899999999999999999 99999999987654
No 163
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=24.45 E-value=62 Score=23.31 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=22.9
Q ss_pred eccCCcCChHHHHHHHHHHHhcCCCeEEEEeC
Q 036900 11 LPFMAHGHLIPFLALARQIHQSTGFKITIANT 42 (247)
Q Consensus 11 ~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t 42 (247)
.-+||||+++=-.+|++++.+ .|. +|+.+
T Consensus 77 ~i~pGyg~lse~~~fa~~~~~-~gi--~fiGp 105 (110)
T PF00289_consen 77 AIHPGYGFLSENAEFAEACED-AGI--IFIGP 105 (110)
T ss_dssp EEESTSSTTTTHHHHHHHHHH-TT---EESSS
T ss_pred ccccccchhHHHHHHHHHHHH-CCC--EEECc
Confidence 347999999999999999998 775 45544
No 164
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=24.43 E-value=4.9e+02 Score=22.85 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=25.1
Q ss_pred CCcE-EEeccccc-chHHHHHHhCCceEEeccccH
Q 036900 123 PPIC-IITDIFFG-WAVDVAKSAGTTNVTFSTGGG 155 (247)
Q Consensus 123 ~~~~-vI~D~~~~-~~~~vA~~lgiP~v~f~~~~a 155 (247)
.||+ ||.|.-.. .+..=|.++|||.+.+.=+.+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 5765 57787664 678899999999999875443
No 165
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=24.37 E-value=1.8e+02 Score=24.50 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=19.1
Q ss_pred CCcEEEeccccc--chHHHHHHhCCceEEecc
Q 036900 123 PPICIITDIFFG--WAVDVAKSAGTTNVTFST 152 (247)
Q Consensus 123 ~~~~vI~D~~~~--~~~~vA~~lgiP~v~f~~ 152 (247)
++.||+++.... .+..+|++.|++.+.+.+
T Consensus 220 ~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 220 DVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred CCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 567777776654 345677777777655443
No 166
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=23.97 E-value=1.4e+02 Score=25.21 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 22 FLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 22 ~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
-..|+++|+. .+..+++.++...
T Consensus 14 ar~la~~L~~-~~~~~~~ss~t~~ 36 (257)
T COG2099 14 ARALAKKLAA-APVDIILSSLTGY 36 (257)
T ss_pred HHHHHHHhhc-cCccEEEEEcccc
Confidence 4678889988 8877776665444
No 167
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=23.63 E-value=72 Score=29.07 Aligned_cols=24 Identities=13% Similarity=0.127 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 20 IPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 20 ~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
.=+-.|++.|+. +||+|+++++..
T Consensus 21 ~~v~~L~~aL~~-~G~~v~v~~p~y 44 (473)
T TIGR02095 21 DVVGALPKALAA-LGHDVRVLLPAY 44 (473)
T ss_pred HHHHHHHHHHHH-cCCeEEEEecCC
Confidence 344689999999 999999999754
No 168
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=23.55 E-value=1.6e+02 Score=25.12 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=36.3
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhc-CCCeEEEEeCCcchHHhh
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQS-TGFKITIANTPLNIQYLQ 50 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~-~G~~VT~~~t~~~~~~~~ 50 (247)
+|+++-....|-+.=...+.+.|.++ .+.+||+++.+.+.+-++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~ 45 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVR 45 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhh
Confidence 47888889999999999999999983 289999999876654443
No 169
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=23.53 E-value=1.3e+02 Score=23.79 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=27.4
Q ss_pred ccCCcCChHH-HHHHHHHHHhcCCCeEEEEeCCcchH
Q 036900 12 PFMAHGHLIP-FLALARQIHQSTGFKITIANTPLNIQ 47 (247)
Q Consensus 12 p~p~~GHi~P-~l~La~~La~~~G~~VT~~~t~~~~~ 47 (247)
..-|-||... ..++.+.|.+++|++|.++.|+.-..
T Consensus 5 gitGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 5 GITGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred EEEccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 3445588866 88999999863699999999975543
No 170
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=23.12 E-value=1.6e+02 Score=24.76 Aligned_cols=33 Identities=21% Similarity=0.095 Sum_probs=24.8
Q ss_pred CCc-EEEeccccc-chHHHHHHhCCceEEeccccH
Q 036900 123 PPI-CIITDIFFG-WAVDVAKSAGTTNVTFSTGGG 155 (247)
Q Consensus 123 ~~~-~vI~D~~~~-~~~~vA~~lgiP~v~f~~~~a 155 (247)
-|| .+|.|.-.- -|..=|+++|||++++.=+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 366 568898764 578889999999998765443
No 171
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=23.01 E-value=74 Score=25.79 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=31.1
Q ss_pred chHHHHHHHHhhhhcCCCCC-cEEEecccccchHHHHHHhCCce
Q 036900 105 LKTPLYNLLMGIKEKEGKPP-ICIITDIFFGWAVDVAKSAGTTN 147 (247)
Q Consensus 105 ~~~~l~~ll~~~~~~~~~~~-~~vI~D~~~~~~~~vA~~lgiP~ 147 (247)
+.+.+++++..+.+ ... -.+|+-.|-..+..||.+||||.
T Consensus 89 lT~Gi~eLv~~L~~---~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 89 LTPGIRELVSRLHA---RGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred cCCCHHHHHHHHHH---cCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 45667788877764 234 46788888888999999999997
No 172
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=22.60 E-value=1.4e+02 Score=24.68 Aligned_cols=31 Identities=29% Similarity=0.310 Sum_probs=18.1
Q ss_pred CCcEEEecccccc--hHHHHHHhCCceEEeccc
Q 036900 123 PPICIITDIFFGW--AVDVAKSAGTTNVTFSTG 153 (247)
Q Consensus 123 ~~~~vI~D~~~~~--~~~vA~~lgiP~v~f~~~ 153 (247)
++.||+++....- +..+|++.|++.+.+.+.
T Consensus 199 ~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 199 KVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp T-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred CCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 5777777765543 356777777777655443
No 173
>PRK09620 hypothetical protein; Provisional
Probab=22.41 E-value=98 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=20.0
Q ss_pred CcCChHHHHHHHHHHHhcCCCeEEEEeCC
Q 036900 15 AHGHLIPFLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 15 ~~GHi~P~l~La~~La~~~G~~VT~~~t~ 43 (247)
+.|-+- .+||+.|.. +|++||++...
T Consensus 27 SSGfiG--s~LA~~L~~-~Ga~V~li~g~ 52 (229)
T PRK09620 27 AKGTIG--RIIAEELIS-KGAHVIYLHGY 52 (229)
T ss_pred CcCHHH--HHHHHHHHH-CCCeEEEEeCC
Confidence 335444 589999999 99999999753
No 174
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=22.10 E-value=69 Score=25.76 Aligned_cols=41 Identities=12% Similarity=0.294 Sum_probs=32.3
Q ss_pred chHHHHHHHHhhhhcCCCCCcEEEecccccchHHHHHHhCCceE
Q 036900 105 LKTPLYNLLMGIKEKEGKPPICIITDIFFGWAVDVAKSAGTTNV 148 (247)
Q Consensus 105 ~~~~l~~ll~~~~~~~~~~~~~vI~D~~~~~~~~vA~~lgiP~v 148 (247)
+.+.+.++++.+.+. ..-+||++.+..++..+++++|+..+
T Consensus 69 l~pga~ell~~lk~~---~~~~IVS~~~~~~~~~il~~lgi~~~ 109 (203)
T TIGR02137 69 PLEGAVEFVDWLRER---FQVVILSDTFYEFSQPLMRQLGFPTL 109 (203)
T ss_pred CCccHHHHHHHHHhC---CeEEEEeCChHHHHHHHHHHcCCchh
Confidence 457788888887641 25789999988899999999999853
No 175
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=21.89 E-value=1.5e+02 Score=23.72 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEecccc--cchHHHHHHhCCceEEecccc
Q 036900 107 TPLYNLLMGIKEKEGKPPICIITDIFF--GWAVDVAKSAGTTNVTFSTGG 154 (247)
Q Consensus 107 ~~l~~ll~~~~~~~~~~~~~vI~D~~~--~~~~~vA~~lgiP~v~f~~~~ 154 (247)
..++.+++. +||+||..... .....-..+.|||++++-...
T Consensus 51 ~~~E~i~~l-------~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 51 PNLEAILAL-------KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp B-HHHHHHT---------SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred ccHHHHHhC-------CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 345665542 49999988766 344566678899999999876
No 176
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=21.52 E-value=90 Score=25.10 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCcchHH
Q 036900 22 FLALARQIHQSTGFKITIANTPLNIQY 48 (247)
Q Consensus 22 ~l~La~~La~~~G~~VT~~~t~~~~~~ 48 (247)
+..|++.|.+ .||+|+++.+..+...
T Consensus 16 i~aL~~~L~~-~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 16 IRALAKALSA-LGHDVVVVAPDSEQSG 41 (196)
T ss_dssp HHHHHHHHTT-TSSEEEEEEESSSTTT
T ss_pred HHHHHHHHHh-cCCeEEEEeCCCCCcC
Confidence 5678899976 7899999999877543
No 177
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.50 E-value=1.1e+02 Score=22.60 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCCeEEEEe
Q 036900 21 PFLALARQIHQSTGFKITIAN 41 (247)
Q Consensus 21 P~l~La~~La~~~G~~VT~~~ 41 (247)
=.+..|++|+. +|++|+..-
T Consensus 24 ~~~~VA~~L~e-~g~dv~atD 43 (129)
T COG1255 24 FFLDVAKRLAE-RGFDVLATD 43 (129)
T ss_pred hHHHHHHHHHH-cCCcEEEEe
Confidence 35789999999 998877654
No 178
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=21.25 E-value=1.7e+02 Score=24.64 Aligned_cols=31 Identities=6% Similarity=-0.228 Sum_probs=23.0
Q ss_pred CCcEEEeccc-----ccc-hHHHHHHhCCceEEeccc
Q 036900 123 PPICIITDIF-----FGW-AVDVAKSAGTTNVTFSTG 153 (247)
Q Consensus 123 ~~~~vI~D~~-----~~~-~~~vA~~lgiP~v~f~~~ 153 (247)
.+|+|++-.- .+- ...+|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 3899997543 332 367999999999987764
No 179
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=21.15 E-value=1.4e+02 Score=24.63 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 19 LIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 19 i~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
+-+.++|.+.|.+ +|++|.|+|....
T Consensus 122 ip~al~l~~~l~~-~G~~Vf~lTGR~e 147 (229)
T TIGR01675 122 LPEGLKLYQKIIE-LGIKIFLLSGRWE 147 (229)
T ss_pred CHHHHHHHHHHHH-CCCEEEEEcCCCh
Confidence 3478999999999 9999999998754
No 180
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=21.03 E-value=1.9e+02 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCcEEEecccccchHHHHHHhCCceEEecc
Q 036900 123 PPICIITDIFFGWAVDVAKSAGTTNVTFST 152 (247)
Q Consensus 123 ~~~~vI~D~~~~~~~~vA~~lgiP~v~f~~ 152 (247)
.+.+||+|---.-+.+.|++.|||.+.+..
T Consensus 29 ~I~~vi~~~~~~~~~~~A~~~gip~~~~~~ 58 (190)
T TIGR00639 29 SVVLVISNKPDAYGLERAAQAGIPTFVLSL 58 (190)
T ss_pred eEEEEEECCccchHHHHHHHcCCCEEEECc
Confidence 356778886434557899999999887553
No 181
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=20.78 E-value=1.1e+02 Score=24.91 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=22.7
Q ss_pred CCcCChHHHHHHHHHHHhcCCCeEEEEeCCcch
Q 036900 14 MAHGHLIPFLALARQIHQSTGFKITIANTPLNI 46 (247)
Q Consensus 14 p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~~ 46 (247)
-|.|++- -.||++|++ .||+|+|.+.....
T Consensus 7 ~GtGniG--~alA~~~a~-ag~eV~igs~r~~~ 36 (211)
T COG2085 7 IGTGNIG--SALALRLAK-AGHEVIIGSSRGPK 36 (211)
T ss_pred eccChHH--HHHHHHHHh-CCCeEEEecCCChh
Confidence 3455544 468999999 99999999876554
No 182
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=20.75 E-value=86 Score=27.67 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=26.4
Q ss_pred eccCCc-CChHHHHHHHHHHHhcCCCeEEEEeCCc
Q 036900 11 LPFMAH-GHLIPFLALARQIHQSTGFKITIANTPL 44 (247)
Q Consensus 11 ~p~p~~-GHi~P~l~La~~La~~~G~~VT~~~t~~ 44 (247)
+|+|.. |.-+=+.+|.+.|++ + |+||+++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~-~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAA-R-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHh-c-CcEEEEEeCC
Confidence 577755 999999999999977 5 8999998654
No 183
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=20.71 E-value=2.3e+02 Score=22.80 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=30.5
Q ss_pred eEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEeCC
Q 036900 7 HIVMLPFMAHGHLIPFLALARQIHQSTGFKITIANTP 43 (247)
Q Consensus 7 hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t~ 43 (247)
=|+++..|.+--=.=++.|||+|.. .|+.|-++.-.
T Consensus 110 iVaFvgSpi~esedeLirlak~lkk-nnVAidii~fG 145 (243)
T COG5148 110 IVAFVGSPIQESEDELIRLAKQLKK-NNVAIDIIFFG 145 (243)
T ss_pred EEEEecCcccccHHHHHHHHHHHHh-cCeeEEEEehh
Confidence 4788899999888999999999999 99887777543
No 184
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=20.71 E-value=1.6e+02 Score=25.17 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 18 HLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 18 Hi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
.+-++++|.+.|.+ +|++|.|+|....
T Consensus 146 Alp~al~ly~~l~~-~G~kIf~VSgR~e 172 (275)
T TIGR01680 146 ALPETLKNYNKLVS-LGFKIIFLSGRLK 172 (275)
T ss_pred CChHHHHHHHHHHH-CCCEEEEEeCCch
Confidence 35589999999999 9999999998754
No 185
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=20.68 E-value=2.2e+02 Score=25.99 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=21.8
Q ss_pred CCcEEEecccccc----------hHHHHHHhCCceEEec
Q 036900 123 PPICIITDIFFGW----------AVDVAKSAGTTNVTFS 151 (247)
Q Consensus 123 ~~~~vI~D~~~~~----------~~~vA~~lgiP~v~f~ 151 (247)
.+|++|+-..+.. +..|.+++|||.++-.
T Consensus 76 ~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 76 NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 5899999987653 2346778999998754
No 186
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=20.68 E-value=1.1e+02 Score=25.89 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=25.9
Q ss_pred CCcCChHHHHHHHHHHHhcCCCeEEEEeCCcc
Q 036900 14 MAHGHLIPFLALARQIHQSTGFKITIANTPLN 45 (247)
Q Consensus 14 p~~GHi~P~l~La~~La~~~G~~VT~~~t~~~ 45 (247)
..-|.-.-+.+|++.|.. +|++||+++....
T Consensus 10 ~~GG~~~~~~~l~~~L~~-~~~~v~~i~~~~~ 40 (358)
T cd03812 10 NRGGIETFIMNYYRNLDR-SKIQFDFLVTSKE 40 (358)
T ss_pred CCccHHHHHHHHHHhcCc-cceEEEEEEeCCC
Confidence 345888888999999998 9999999987643
No 187
>COG3150 Predicted esterase [General function prediction only]
Probab=20.65 E-value=1.6e+02 Score=23.44 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=29.3
Q ss_pred HHHHHHHhhhhcCCCCCcEEEecccc--cchHHHHHHhCCceEEeccccHHH
Q 036900 108 PLYNLLMGIKEKEGKPPICIITDIFF--GWAVDVAKSAGTTNVTFSTGGGYG 157 (247)
Q Consensus 108 ~l~~ll~~~~~~~~~~~~~vI~D~~~--~~~~~vA~~lgiP~v~f~~~~a~~ 157 (247)
.++.++.+.. . .+-+|+..-+ .|+-.++..+||+.|+|.+.-.--
T Consensus 48 ele~~i~~~~----~-~~p~ivGssLGGY~At~l~~~~Girav~~NPav~P~ 94 (191)
T COG3150 48 ELEKAVQELG----D-ESPLIVGSSLGGYYATWLGFLCGIRAVVFNPAVRPY 94 (191)
T ss_pred HHHHHHHHcC----C-CCceEEeecchHHHHHHHHHHhCChhhhcCCCcCch
Confidence 4555565543 1 2233333333 499999999999999999876543
No 188
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=20.56 E-value=1.8e+02 Score=20.02 Aligned_cols=33 Identities=9% Similarity=0.133 Sum_probs=22.7
Q ss_pred EeccCCcCChHHHHHHHHHHHhcCCCeEEEEeC
Q 036900 10 MLPFMAHGHLIPFLALARQIHQSTGFKITIANT 42 (247)
Q Consensus 10 ~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t 42 (247)
++|+-...--..+++.|..++...|.+||++..
T Consensus 3 lv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v 35 (130)
T cd00293 3 LVAVDGSEESERALRWAARLARRLGAELVLLHV 35 (130)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 444444455667888888888845788887764
No 189
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=20.50 E-value=2.2e+02 Score=25.93 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=21.8
Q ss_pred CCcEEEecccccc----------hHHHHHHhCCceEEec
Q 036900 123 PPICIITDIFFGW----------AVDVAKSAGTTNVTFS 151 (247)
Q Consensus 123 ~~~~vI~D~~~~~----------~~~vA~~lgiP~v~f~ 151 (247)
.+|++|+-..+.. +..|.+++|||.++-.
T Consensus 76 ~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 76 EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 5899999987653 2346778999998754
No 190
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=20.31 E-value=1.2e+02 Score=23.49 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=22.3
Q ss_pred CceEEEeccCCcCChHHHHHHHHHHHhcCCCeEEEEe
Q 036900 5 NEHIVMLPFMAHGHLIPFLALARQIHQSTGFKITIAN 41 (247)
Q Consensus 5 ~~hvv~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~ 41 (247)
.++|+++.-++. .=-=-+-+||.|++ +|+.|+++.
T Consensus 25 ~~~v~il~G~Gn-NGgDgl~~AR~L~~-~G~~V~v~~ 59 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGGDGLVAARHLAN-RGYNVTVYL 59 (169)
T ss_dssp T-EEEEEE-SSH-HHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCeEEEEECCCC-ChHHHHHHHHHHHH-CCCeEEEEE
Confidence 456777665542 00124678999999 999999944
No 191
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=20.17 E-value=1e+02 Score=24.88 Aligned_cols=23 Identities=9% Similarity=0.218 Sum_probs=15.7
Q ss_pred HHHHHhhhhcCCCCCcEEEecccccc
Q 036900 110 YNLLMGIKEKEGKPPICIITDIFFGW 135 (247)
Q Consensus 110 ~~ll~~~~~~~~~~~~~vI~D~~~~~ 135 (247)
+++.+.+. .+++||||+|+.-..
T Consensus 126 ~ki~e~lp---~r~VdvVlSDMapna 148 (232)
T KOG4589|consen 126 RKIFEALP---NRPVDVVLSDMAPNA 148 (232)
T ss_pred HHHHHhCC---CCcccEEEeccCCCC
Confidence 34444544 367899999997654
No 192
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=20.15 E-value=1.1e+02 Score=25.11 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=20.7
Q ss_pred EeccCCcCChHHHHHHHHHHHhcCCCeEEEEeC
Q 036900 10 MLPFMAHGHLIPFLALARQIHQSTGFKITIANT 42 (247)
Q Consensus 10 ~~p~p~~GHi~P~l~La~~La~~~G~~VT~~~t 42 (247)
++.-.+.|-+- .+||+.|+. +|++||++..
T Consensus 19 ~itN~SSG~iG--~aLA~~L~~-~G~~V~li~r 48 (229)
T PRK06732 19 GITNHSTGQLG--KIIAETFLA-AGHEVTLVTT 48 (229)
T ss_pred eecCccchHHH--HHHHHHHHh-CCCEEEEEEC
Confidence 34444444332 578899999 9999999864
Done!