Query 036903
Match_columns 323
No_of_seqs 239 out of 1668
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:32:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.3E-51 9.2E-56 405.8 15.9 303 1-314 276-630 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.1E-43 2.3E-48 368.0 28.1 315 2-322 312-631 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 1.3E-26 2.8E-31 207.1 6.4 155 2-157 117-281 (287)
4 KOG0617 Ras suppressor protein 98.6 2.9E-09 6.2E-14 85.1 -1.2 89 222-321 80-169 (264)
5 PF13855 LRR_8: Leucine rich r 98.5 1.2E-07 2.5E-12 63.9 3.6 58 247-314 1-61 (61)
6 PF12799 LRR_4: Leucine Rich r 98.4 2E-07 4.3E-12 58.1 1.8 39 281-319 2-41 (44)
7 PRK04841 transcriptional regul 98.3 1.2E-05 2.6E-10 83.1 15.2 174 11-192 149-334 (903)
8 KOG0617 Ras suppressor protein 98.2 4.4E-08 9.6E-13 78.4 -4.1 89 222-321 103-192 (264)
9 KOG0444 Cytoskeletal regulator 98.1 4.8E-07 1E-11 85.7 0.3 74 236-319 115-195 (1255)
10 PLN03150 hypothetical protein; 98.1 3.2E-06 7E-11 83.4 5.3 75 238-321 433-510 (623)
11 PF12799 LRR_4: Leucine Rich r 98.1 2E-06 4.3E-11 53.6 1.8 41 247-297 1-41 (44)
12 KOG4658 Apoptotic ATPase [Sign 98.0 4.2E-06 9.1E-11 85.0 3.3 67 246-322 544-615 (889)
13 KOG0472 Leucine-rich repeat pr 97.8 4.1E-06 8.9E-11 75.6 0.5 69 241-320 246-315 (565)
14 KOG0444 Cytoskeletal regulator 97.8 2.4E-06 5.1E-11 81.2 -1.9 78 234-321 209-287 (1255)
15 PLN00113 leucine-rich repeat r 97.8 2.3E-05 5.1E-10 81.6 5.2 71 240-319 181-254 (968)
16 PF14580 LRR_9: Leucine-rich r 97.8 1.2E-05 2.6E-10 66.0 1.9 83 222-318 43-129 (175)
17 PLN00113 leucine-rich repeat r 97.7 4.4E-05 9.6E-10 79.6 5.1 74 238-320 203-279 (968)
18 PF13855 LRR_8: Leucine rich r 97.7 2.7E-05 5.8E-10 52.2 2.3 41 281-321 2-44 (61)
19 PF14580 LRR_9: Leucine-rich r 97.5 0.0001 2.2E-09 60.5 3.7 62 245-317 40-103 (175)
20 PLN03210 Resistant to P. syrin 97.5 0.0002 4.4E-09 75.8 6.9 67 243-318 653-721 (1153)
21 KOG0472 Leucine-rich repeat pr 97.4 1.3E-05 2.8E-10 72.4 -2.4 69 242-320 223-293 (565)
22 PLN03150 hypothetical protein; 97.2 0.00022 4.8E-09 70.6 3.6 65 248-321 419-486 (623)
23 KOG0618 Serine/threonine phosp 97.2 6.8E-05 1.5E-09 74.3 -0.9 70 240-319 61-131 (1081)
24 PRK15370 E3 ubiquitin-protein 97.0 0.00086 1.9E-08 67.4 5.3 60 248-320 242-301 (754)
25 PRK15370 E3 ubiquitin-protein 96.9 0.0012 2.5E-08 66.5 5.4 62 247-321 220-281 (754)
26 PRK15386 type III secretion pr 96.9 0.0012 2.6E-08 61.1 4.5 59 248-322 73-135 (426)
27 KOG1259 Nischarin, modulator o 96.8 0.00039 8.5E-09 60.9 0.8 60 246-316 283-343 (490)
28 PF00560 LRR_1: Leucine Rich R 96.7 0.00039 8.5E-09 36.2 0.1 17 282-298 2-18 (22)
29 KOG0532 Leucine-rich repeat (L 96.7 0.0003 6.4E-09 66.5 -0.6 63 248-320 144-207 (722)
30 KOG0618 Serine/threonine phosp 96.7 0.00038 8.3E-09 69.2 -0.0 70 242-321 40-110 (1081)
31 PRK15387 E3 ubiquitin-protein 96.7 0.0032 7E-08 63.3 6.0 17 303-319 343-359 (788)
32 KOG0532 Leucine-rich repeat (L 96.6 0.00031 6.8E-09 66.4 -1.2 71 240-321 182-253 (722)
33 COG4886 Leucine-rich repeat (L 96.6 0.0006 1.3E-08 63.7 0.1 63 248-320 141-204 (394)
34 PF13504 LRR_7: Leucine rich r 96.5 0.0014 3.1E-08 31.7 1.2 16 303-318 2-17 (17)
35 KOG4194 Membrane glycoprotein 96.5 0.002 4.4E-08 61.3 3.2 82 228-319 83-166 (873)
36 TIGR00635 ruvB Holliday juncti 96.4 0.037 8E-07 49.7 11.0 153 14-176 130-294 (305)
37 KOG4237 Extracellular matrix p 96.4 0.00024 5.2E-09 64.3 -3.4 83 227-318 71-156 (498)
38 PF00560 LRR_1: Leucine Rich R 96.4 0.0018 3.9E-08 33.6 1.3 20 303-322 1-20 (22)
39 PRK15387 E3 ubiquitin-protein 96.3 0.0032 6.9E-08 63.3 3.7 56 247-315 402-458 (788)
40 COG4886 Leucine-rich repeat (L 96.3 0.0019 4.2E-08 60.3 2.0 70 242-321 111-182 (394)
41 KOG4237 Extracellular matrix p 96.3 0.00098 2.1E-08 60.5 0.1 70 239-317 266-337 (498)
42 KOG1259 Nischarin, modulator o 96.3 0.002 4.3E-08 56.6 1.6 38 281-318 353-390 (490)
43 PRK00080 ruvB Holliday junctio 96.2 0.024 5.3E-07 51.6 8.6 155 14-175 151-314 (328)
44 KOG3665 ZYG-1-like serine/thre 96.1 0.0028 6E-08 63.2 1.9 82 220-313 147-231 (699)
45 KOG4579 Leucine-rich repeat (L 96.1 0.00049 1.1E-08 53.5 -2.7 73 237-319 67-140 (177)
46 KOG0531 Protein phosphatase 1, 96.0 0.0037 8E-08 58.9 2.1 66 243-319 114-179 (414)
47 KOG3665 ZYG-1-like serine/thre 95.9 0.0015 3.2E-08 65.1 -0.9 84 223-315 124-208 (699)
48 KOG2739 Leucine-rich acidic nu 95.8 0.0055 1.2E-07 52.7 2.2 69 241-317 59-131 (260)
49 PF13504 LRR_7: Leucine rich r 95.8 0.0051 1.1E-07 29.7 1.2 16 281-296 2-17 (17)
50 cd00116 LRR_RI Leucine-rich re 95.8 0.0039 8.4E-08 56.1 1.3 90 221-315 165-263 (319)
51 KOG4194 Membrane glycoprotein 95.8 0.0042 9.2E-08 59.2 1.5 77 234-319 208-286 (873)
52 smart00370 LRR Leucine-rich re 95.6 0.0074 1.6E-07 32.6 1.4 20 301-320 1-20 (26)
53 smart00369 LRR_TYP Leucine-ric 95.6 0.0074 1.6E-07 32.6 1.4 20 301-320 1-20 (26)
54 PF07725 LRR_3: Leucine Rich R 95.3 0.013 2.9E-07 29.4 1.7 20 303-322 1-20 (20)
55 KOG0531 Protein phosphatase 1, 95.2 0.0086 1.9E-07 56.4 1.4 66 243-318 91-156 (414)
56 KOG4579 Leucine-rich repeat (L 95.2 0.0022 4.8E-08 49.9 -2.1 69 243-320 49-118 (177)
57 PRK15386 type III secretion pr 95.0 0.044 9.6E-07 51.0 5.5 12 247-258 94-105 (426)
58 COG2909 MalT ATP-dependent tra 94.9 0.16 3.4E-06 50.9 9.2 175 8-193 154-341 (894)
59 cd00116 LRR_RI Leucine-rich re 94.7 0.011 2.3E-07 53.2 0.5 90 221-315 137-234 (319)
60 KOG3207 Beta-tubulin folding c 94.5 0.0063 1.4E-07 56.0 -1.3 88 220-315 120-210 (505)
61 KOG1644 U2-associated snRNP A' 94.5 0.041 8.9E-07 45.8 3.5 67 241-316 58-127 (233)
62 KOG3207 Beta-tubulin folding c 93.9 0.031 6.6E-07 51.6 1.8 66 243-318 242-317 (505)
63 KOG1859 Leucine-rich repeat pr 93.7 0.01 2.2E-07 58.1 -1.7 33 281-313 233-265 (1096)
64 smart00370 LRR Leucine-rich re 93.6 0.042 9.1E-07 29.5 1.3 21 278-299 1-21 (26)
65 smart00369 LRR_TYP Leucine-ric 93.6 0.042 9.1E-07 29.5 1.3 21 278-299 1-21 (26)
66 COG3903 Predicted ATPase [Gene 93.3 0.14 3.1E-06 47.1 4.9 174 13-193 116-317 (414)
67 PRK06893 DNA replication initi 91.8 1.1 2.3E-05 38.6 8.3 73 13-89 123-205 (229)
68 KOG2982 Uncharacterized conser 90.9 0.1 2.3E-06 46.1 1.1 69 240-317 90-161 (418)
69 KOG1909 Ran GTPase-activating 90.2 0.049 1.1E-06 48.9 -1.5 89 222-315 186-283 (382)
70 KOG1859 Leucine-rich repeat pr 90.2 0.059 1.3E-06 53.1 -1.1 71 236-317 176-247 (1096)
71 smart00364 LRR_BAC Leucine-ric 90.1 0.18 3.8E-06 27.2 1.2 17 303-319 3-19 (26)
72 KOG1644 U2-associated snRNP A' 90.0 0.39 8.5E-06 40.1 3.7 84 219-312 62-150 (233)
73 COG3899 Predicted ATPase [Gene 88.9 3.5 7.5E-05 42.7 10.4 154 34-190 210-386 (849)
74 KOG2739 Leucine-rich acidic nu 88.8 0.29 6.2E-06 42.3 2.2 62 244-316 40-105 (260)
75 KOG2982 Uncharacterized conser 88.4 0.36 7.7E-06 42.8 2.5 62 244-314 68-133 (418)
76 KOG0473 Leucine-rich repeat pr 88.4 0.013 2.8E-07 49.8 -6.1 65 241-315 59-124 (326)
77 KOG0473 Leucine-rich repeat pr 88.2 0.014 3E-07 49.6 -6.0 72 240-321 35-107 (326)
78 KOG1909 Ran GTPase-activating 87.6 0.32 7E-06 43.8 1.8 93 218-315 154-254 (382)
79 PF05729 NACHT: NACHT domain 86.3 1.6 3.5E-05 34.6 5.2 43 12-56 118-163 (166)
80 PRK09087 hypothetical protein; 84.6 14 0.0003 31.6 10.4 71 13-87 116-195 (226)
81 PF01637 Arch_ATPase: Archaeal 84.4 5.2 0.00011 33.6 7.8 51 35-86 183-233 (234)
82 smart00365 LRR_SD22 Leucine-ri 83.8 0.83 1.8E-05 24.6 1.5 17 301-317 1-17 (26)
83 TIGR03015 pepcterm_ATPase puta 83.1 7.9 0.00017 33.7 8.5 57 35-91 184-242 (269)
84 PF13516 LRR_6: Leucine Rich r 82.4 0.88 1.9E-05 23.7 1.3 15 301-315 1-15 (24)
85 PRK00411 cdc6 cell division co 80.3 43 0.00092 31.1 12.8 148 17-171 176-358 (394)
86 PRK07471 DNA polymerase III su 73.8 33 0.00071 31.8 9.8 70 12-88 169-239 (365)
87 TIGR03420 DnaA_homol_Hda DnaA 71.3 30 0.00065 29.1 8.5 72 14-89 123-203 (226)
88 KOG2120 SCF ubiquitin ligase, 70.0 1.8 4E-05 38.5 0.6 60 244-312 310-373 (419)
89 PRK08727 hypothetical protein; 69.3 33 0.00071 29.4 8.3 68 13-84 125-201 (233)
90 PF13306 LRR_5: Leucine rich r 65.7 16 0.00035 27.4 5.2 29 281-311 82-112 (129)
91 PF13306 LRR_5: Leucine rich r 65.5 20 0.00044 26.9 5.7 82 222-319 13-97 (129)
92 PRK08084 DNA replication initi 65.4 51 0.0011 28.3 8.7 70 15-88 132-210 (235)
93 PF14516 AAA_35: AAA-like doma 65.2 1E+02 0.0022 28.0 11.0 55 34-94 192-246 (331)
94 TIGR00678 holB DNA polymerase 62.4 16 0.00035 29.9 4.9 71 4-83 116-187 (188)
95 KOG2123 Uncharacterized conser 62.1 0.55 1.2E-05 41.3 -4.1 61 241-312 35-98 (388)
96 KOG2123 Uncharacterized conser 60.7 0.67 1.4E-05 40.8 -3.8 78 219-308 39-123 (388)
97 smart00368 LRR_RI Leucine rich 60.4 6.5 0.00014 21.4 1.5 13 302-314 2-14 (28)
98 PRK09112 DNA polymerase III su 58.0 36 0.00077 31.4 6.7 70 14-88 171-241 (351)
99 KOG3864 Uncharacterized conser 55.0 3.4 7.3E-05 34.7 -0.4 64 241-311 119-185 (221)
100 PRK05642 DNA replication initi 52.4 96 0.0021 26.6 8.2 73 13-89 129-210 (234)
101 PRK06620 hypothetical protein; 51.8 1.1E+02 0.0025 25.7 8.4 65 13-82 112-184 (214)
102 KOG2035 Replication factor C, 51.2 79 0.0017 28.2 7.2 88 36-125 179-282 (351)
103 smart00367 LRR_CC Leucine-rich 50.9 11 0.00023 20.0 1.3 11 302-312 2-12 (26)
104 PRK14087 dnaA chromosomal repl 48.1 95 0.0021 29.7 8.1 77 13-91 238-323 (450)
105 PRK05564 DNA polymerase III su 47.6 58 0.0013 29.2 6.3 76 4-86 113-189 (313)
106 PRK14963 DNA polymerase III su 44.9 1.3E+02 0.0027 29.3 8.4 74 8-84 140-214 (504)
107 PRK14961 DNA polymerase III su 44.2 1.4E+02 0.0031 27.5 8.5 77 7-86 142-219 (363)
108 PRK12402 replication factor C 40.1 1.9E+02 0.0042 25.8 8.7 73 11-86 152-225 (337)
109 PRK13342 recombination factor 39.3 1.4E+02 0.003 28.1 7.7 56 35-90 143-199 (413)
110 PRK05707 DNA polymerase III su 39.2 85 0.0018 28.6 6.0 68 13-87 135-203 (328)
111 PRK08903 DnaA regulatory inact 39.2 2.2E+02 0.0048 23.9 8.4 55 35-91 149-203 (227)
112 TIGR02928 orc1/cdc6 family rep 38.9 3E+02 0.0065 25.0 14.2 129 36-171 192-350 (365)
113 PRK06090 DNA polymerase III su 38.6 1.5E+02 0.0032 26.9 7.4 65 12-87 136-201 (319)
114 PRK07940 DNA polymerase III su 36.7 1E+02 0.0022 28.9 6.3 72 8-87 141-213 (394)
115 TIGR02397 dnaX_nterm DNA polym 34.1 1.8E+02 0.0039 26.3 7.5 78 8-88 141-219 (355)
116 PRK06645 DNA polymerase III su 34.0 1.6E+02 0.0035 28.6 7.3 73 9-84 153-226 (507)
117 PF00308 Bac_DnaA: Bacterial d 33.5 2.3E+02 0.005 23.9 7.5 66 13-82 129-203 (219)
118 PRK00440 rfc replication facto 33.4 3.4E+02 0.0074 23.9 9.5 74 9-85 127-201 (319)
119 PF10236 DAP3: Mitochondrial r 33.0 1.4E+02 0.003 26.9 6.4 47 37-83 258-305 (309)
120 PRK08769 DNA polymerase III su 31.2 74 0.0016 28.9 4.3 70 10-88 139-209 (319)
121 COG5238 RNA1 Ran GTPase-activa 28.9 30 0.00064 30.8 1.2 15 245-259 212-226 (388)
122 PRK12323 DNA polymerase III su 28.3 1.1E+02 0.0024 30.8 5.1 80 5-87 145-225 (700)
123 PRK07003 DNA polymerase III su 28.2 6.5E+02 0.014 26.2 10.4 74 10-86 145-220 (830)
124 PRK06871 DNA polymerase III su 28.0 1.9E+02 0.0041 26.3 6.3 65 12-84 135-200 (325)
125 PF09675 Chlamy_scaf: Chlamydi 27.6 2.1E+02 0.0046 21.4 5.3 55 72-135 3-60 (114)
126 TIGR02903 spore_lon_C ATP-depe 27.3 1.7E+02 0.0037 29.3 6.4 79 9-90 317-398 (615)
127 PRK14959 DNA polymerase III su 26.7 3.2E+02 0.0068 27.5 8.0 76 13-91 148-225 (624)
128 PRK14700 recombination factor 26.7 2.5E+02 0.0055 25.2 6.7 72 10-81 3-81 (300)
129 PRK07764 DNA polymerase III su 25.9 5.7E+02 0.012 26.7 10.0 77 5-84 141-218 (824)
130 PRK14971 DNA polymerase III su 25.0 4.3E+02 0.0094 26.5 8.7 73 9-84 146-219 (614)
131 PRK06964 DNA polymerase III su 24.0 5.7E+02 0.012 23.5 9.3 68 10-88 158-226 (342)
132 PRK07993 DNA polymerase III su 23.9 1.9E+02 0.0041 26.4 5.6 67 12-86 136-203 (334)
133 COG3267 ExeA Type II secretory 23.3 2.2E+02 0.0049 25.0 5.5 51 38-88 195-246 (269)
134 PRK14962 DNA polymerase III su 22.9 6.7E+02 0.015 24.2 9.3 80 9-91 142-223 (472)
135 PLN03025 replication factor C 22.7 2.9E+02 0.0064 24.7 6.6 72 10-84 125-197 (319)
136 TIGR01242 26Sp45 26S proteasom 22.2 3.5E+02 0.0076 24.8 7.2 65 13-81 260-328 (364)
137 PRK14964 DNA polymerase III su 21.4 2.8E+02 0.006 27.0 6.3 74 8-84 140-214 (491)
138 PRK07399 DNA polymerase III su 21.1 2.8E+02 0.0061 25.0 6.1 68 14-87 154-221 (314)
139 PRK07994 DNA polymerase III su 20.9 2.7E+02 0.0058 28.1 6.3 69 16-87 152-220 (647)
140 PRK14956 DNA polymerase III su 20.8 2.7E+02 0.0059 26.9 6.1 66 17-85 155-220 (484)
141 PF13730 HTH_36: Helix-turn-he 20.4 1.3E+02 0.0028 18.8 2.8 44 124-168 2-55 (55)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-51 Score=405.77 Aligned_cols=303 Identities=26% Similarity=0.324 Sum_probs=252.4
Q ss_pred CcchhcCCCCCCCCceEEEEcCChhhHhh-cCCCCcceEEcCCCCHHhHHHHHHHhhhcC-CCCCCChHHHHHHHHHHhc
Q 036903 1 LEYLTGGLDRFGPGSRIIVTTRDKRVLDN-FGVPNTNIYKVRGLNYSEALELFCNFAFKQ-SNCPDGLFTLSKHIVGYCK 78 (323)
Q Consensus 1 le~l~~~~~~~~~gs~IlvTTR~~~v~~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~i~~~c~ 78 (323)
++.+..+++...+||+|++|||++.|+.. ++ +...++++.|+++|||+||++.+|.. ....+.++++|++++++|+
T Consensus 276 w~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~--~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~ 353 (889)
T KOG4658|consen 276 WDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG--VDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCG 353 (889)
T ss_pred HHhcCCCCCCccCCeEEEEEeccHhhhhcccc--CCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhC
Confidence 35688899999999999999999999998 76 68899999999999999999999876 4455669999999999999
Q ss_pred CCchhHHHHhhhhcCC-ChHHHHHHHHHhhcC-------CcccHHHHHHHHhcCCChhhHhHhhhhcccCCC--CCHHHH
Q 036903 79 GNPLALRVLGSFLHRK-SKLDWENALENLKRS-------SDFEIYDVLKISYNELNPEEKSLFLDIACFFAG--EDKNLV 148 (323)
Q Consensus 79 GlPLAi~~ig~~L~~~-~~~~w~~~l~~l~~~-------~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~--~~~~~l 148 (323)
|+|||++++|+.|+.+ +..+|+++.+.+.+. ..+.+.+++++|||.||++.|.||+|||+||+| ++++.|
T Consensus 354 GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~L 433 (889)
T KOG4658|consen 354 GLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKL 433 (889)
T ss_pred ChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHH
Confidence 9999999999999998 778999999987654 246799999999999998899999999999999 556779
Q ss_pred HHHHhhcch----------------HHHHhhhCCcceEcCC----CeEEecHHHHHHHHHHHhhhccCCC----------
Q 036903 149 TKILDDSNY----------------VLNVLVDKSLLRISRY----NKLQMHDLLQEMGREIVRQESVKEP---------- 198 (323)
Q Consensus 149 ~~~w~~~g~----------------~l~~L~~~~ll~~~~~----~~~~mh~lv~~~~~~~~~~~~~~~~---------- 198 (323)
+.+|+|||| |+++|++++|++.... ..|+|||+|||+|.+++.+.+....
T Consensus 434 i~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~ 513 (889)
T KOG4658|consen 434 IEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGL 513 (889)
T ss_pred HHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCc
Confidence 999999997 9999999999998642 5799999999999999993322111
Q ss_pred ---------CCeeecccchhhHHHhhcCcccceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccc
Q 036903 199 ---------GKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKV 269 (323)
Q Consensus 199 ---------~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~ 269 (323)
...+++..+..............+++++.+..+......+...+|..|+.||||||++|.- ..
T Consensus 514 ~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~--------l~ 585 (889)
T KOG4658|consen 514 SEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS--------LS 585 (889)
T ss_pred cccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc--------cC
Confidence 1112222222323333334444467777666553224667788899999999999998763 48
Q ss_pred ccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcc
Q 036903 270 HLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 270 ~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i 314 (323)
+||++|+.|. +||||+++++.+.+||.+++ |+.|++||+..+.-
T Consensus 586 ~LP~~I~~Li-~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 586 KLPSSIGELV-HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred cCChHHhhhh-hhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence 8999999999 99999999999999999998 99999999998853
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-43 Score=368.05 Aligned_cols=315 Identities=42% Similarity=0.710 Sum_probs=277.6
Q ss_pred cchhcCCCCCCCCceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCc
Q 036903 2 EYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNP 81 (323)
Q Consensus 2 e~l~~~~~~~~~gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 81 (323)
+.+++...|+++||+||||||+..++..++ ..++|+++.+++++||+||+++||+....++++.+++++|+++|+|+|
T Consensus 312 ~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~--~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 312 DALAGQTQWFGSGSRIIVITKDKHFLRAHG--IDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP 389 (1153)
T ss_pred HHHHhhCccCCCCcEEEEEeCcHHHHHhcC--CCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 556777788899999999999999998776 678999999999999999999999876666678899999999999999
Q ss_pred hhHHHHhhhhcCCChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChh-hHhHhhhhcccCCCCCHHHHHHHHhhcch---
Q 036903 82 LALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPE-EKSLFLDIACFFAGEDKNLVTKILDDSNY--- 157 (323)
Q Consensus 82 LAi~~ig~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~-~k~cfl~~s~fp~~~~~~~l~~~w~~~g~--- 157 (323)
||++++|++|+.++..+|+.++++++.....++..++++||+.|+++ .|.||+++|+|+.+.+++.+..++...++
T Consensus 390 LAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~ 469 (1153)
T PLN03210 390 LGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVN 469 (1153)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCch
Confidence 99999999999999999999999998887889999999999999875 79999999999999888876665555554
Q ss_pred -HHHHhhhCCcceEcCCCeEEecHHHHHHHHHHHhhhccCCCCCeeecccchhhHHHhhcCcccceeEEEEeecCCcccc
Q 036903 158 -VLNVLVDKSLLRISRYNKLQMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDI 236 (323)
Q Consensus 158 -~l~~L~~~~ll~~~~~~~~~mh~lv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 236 (323)
.++.|++++|++.. .+.+.|||++|++|++++.++. ..++++.++|.+.++..++....+..+++.++++.+....+
T Consensus 470 ~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 470 IGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred hChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 68999999999986 5789999999999999998886 67888999999999999999999999999999999988888
Q ss_pred ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccc
Q 036903 237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVEL 316 (323)
Q Consensus 237 ~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~ 316 (323)
.+...+|.+|++|+.|.++.+... ........+|+.+..++..||+|+|.++.++.+|..+.+.+|+.|++.+|+++.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~--~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWD--QKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEK 625 (1153)
T ss_pred eecHHHHhcCccccEEEEeccccc--ccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccc
Confidence 899999999999999999765421 001112467888888887899999999999999999888999999999999999
Q ss_pred cccccC
Q 036903 317 LWEEKK 322 (323)
Q Consensus 317 lP~~i~ 322 (323)
+|++++
T Consensus 626 L~~~~~ 631 (1153)
T PLN03210 626 LWDGVH 631 (1153)
T ss_pred cccccc
Confidence 998764
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.93 E-value=1.3e-26 Score=207.10 Aligned_cols=155 Identities=35% Similarity=0.570 Sum_probs=123.0
Q ss_pred cchhcCCCCCCCCceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCC-CCCCChHHHHHHHHHHhcCC
Q 036903 2 EYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS-NCPDGLFTLSKHIVGYCKGN 80 (323)
Q Consensus 2 e~l~~~~~~~~~gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~c~Gl 80 (323)
+.+...++.++.||+||||||+..++..++. ....|++++|+.+||++||.+.++... ..++..+..+++|+++|+|+
T Consensus 117 ~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 117 EELREPLPSFSSGSKILVTTRDRSVAGSLGG-TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp -------HCHHSS-EEEEEESCGGGGTTHHS-CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3456667778889999999999999877651 267999999999999999999997655 34455678899999999999
Q ss_pred chhHHHHhhhhcCC-ChHHHHHHHHHhhcCC------cccHHHHHHHHhcCCChhhHhHhhhhcccCCC--CCHHHHHHH
Q 036903 81 PLALRVLGSFLHRK-SKLDWENALENLKRSS------DFEIYDVLKISYNELNPEEKSLFLDIACFFAG--EDKNLVTKI 151 (323)
Q Consensus 81 PLAi~~ig~~L~~~-~~~~w~~~l~~l~~~~------~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~--~~~~~l~~~ 151 (323)
|||++++|++|+.+ +..+|+.+++++.... ...+..++.+||+.||++.|+||+|||+||++ ++.+.++++
T Consensus 196 PLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~l 275 (287)
T PF00931_consen 196 PLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRL 275 (287)
T ss_dssp HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHH
Confidence 99999999999765 7889999998865442 46799999999999999999999999999999 457779999
Q ss_pred Hhhcch
Q 036903 152 LDDSNY 157 (323)
Q Consensus 152 w~~~g~ 157 (323)
|+++|+
T Consensus 276 W~~e~~ 281 (287)
T PF00931_consen 276 WVAEGF 281 (287)
T ss_dssp HTT-HH
T ss_pred HHHCCC
Confidence 999986
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.65 E-value=2.9e-09 Score=85.10 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=56.2
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI- 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~- 300 (323)
+++.+.+.++ .+.+.+..|..++.|.||||.++++ ....+|..+-.+. .||.|.|+.+.++.||..++
T Consensus 80 klr~lnvgmn---rl~~lprgfgs~p~levldltynnl-------~e~~lpgnff~m~-tlralyl~dndfe~lp~dvg~ 148 (264)
T KOG0617|consen 80 KLRILNVGMN---RLNILPRGFGSFPALEVLDLTYNNL-------NENSLPGNFFYMT-TLRALYLGDNDFEILPPDVGK 148 (264)
T ss_pred hhhheecchh---hhhcCccccCCCchhhhhhcccccc-------ccccCCcchhHHH-HHHHHHhcCCCcccCChhhhh
Confidence 4444444433 3556677889999999999998877 3345566555555 56666666666666666665
Q ss_pred CCCceEEEcCCCccccccccc
Q 036903 301 TDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~lP~~i 321 (323)
|++||.|.+++|.+-+||++|
T Consensus 149 lt~lqil~lrdndll~lpkei 169 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLLSLPKEI 169 (264)
T ss_pred hcceeEEeeccCchhhCcHHH
Confidence 666666666666655566554
No 5
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=1.2e-07 Score=63.89 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=50.3
Q ss_pred CCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903 247 TNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i 314 (323)
++|++|++++|.+ ..+|. .+..++ +|++|++++|.+..+|.. +. +++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l---------~~i~~~~f~~l~-~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL---------TEIPPDSFSNLP-NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE---------SEECTTTTTTGT-TESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC---------CccCHHHHcCCC-CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999987 66664 678899 999999999999999875 46 99999999999975
No 6
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=2e-07 Score=58.13 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=29.4
Q ss_pred CceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903 281 ELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 281 ~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
+|++|++++|+|+.+|..++ |++|++|++++|.|+.+|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 77888888888888888776 8888888888888777653
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.32 E-value=1.2e-05 Score=83.08 Aligned_cols=174 Identities=14% Similarity=0.170 Sum_probs=114.4
Q ss_pred CCCCceEEEEcCChhhHh--hcCCCCcceEEcC----CCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhH
Q 036903 11 FGPGSRIIVTTRDKRVLD--NFGVPNTNIYKVR----GLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLAL 84 (323)
Q Consensus 11 ~~~gs~IlvTTR~~~v~~--~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi 84 (323)
..++.++|||||...-.. .... ......+. +|+.+|+.++|.......- -.+.+..|.+.|+|.|+++
T Consensus 149 ~~~~~~lv~~sR~~~~~~~~~l~~-~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-----~~~~~~~l~~~t~Gwp~~l 222 (903)
T PRK04841 149 QPENLTLVVLSRNLPPLGIANLRV-RDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-----EAAESSRLCDDVEGWATAL 222 (903)
T ss_pred CCCCeEEEEEeCCCCCCchHhHHh-cCcceecCHHhCCCCHHHHHHHHHhccCCCC-----CHHHHHHHHHHhCChHHHH
Confidence 345678889999842211 1100 12345555 9999999999987653221 1345788999999999999
Q ss_pred HHHhhhhcCCChHHHHHHHHHhhcCCcccHHHHHHHH-hcCCChhhHhHhhhhcccCCCCCHHHHHHHHhhcch--HHHH
Q 036903 85 RVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKIS-YNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNY--VLNV 161 (323)
Q Consensus 85 ~~ig~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s-y~~L~~~~k~cfl~~s~fp~~~~~~~l~~~w~~~g~--~l~~ 161 (323)
..++..++..+.. .......+.......+...+.-. ++.||++.++.+...|+++ .+..+.+..+....+- .+++
T Consensus 223 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~ 300 (903)
T PRK04841 223 QLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEE 300 (903)
T ss_pred HHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHH
Confidence 9999877644210 11112222221233466554444 8999999999999999987 6775554444432222 8999
Q ss_pred hhhCCcceE-cC--CCeEEecHHHHHHHHHHHhh
Q 036903 162 LVDKSLLRI-SR--YNKLQMHDLLQEMGREIVRQ 192 (323)
Q Consensus 162 L~~~~ll~~-~~--~~~~~mh~lv~~~~~~~~~~ 192 (323)
|.+.+++.. .+ ...|+.|++++++.+.....
T Consensus 301 l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 301 LERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred HHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHh
Confidence 999999653 32 23799999999999987643
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.22 E-value=4.4e-08 Score=78.38 Aligned_cols=89 Identities=21% Similarity=0.214 Sum_probs=73.7
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI- 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~- 300 (323)
.++.+-+..+++..-.+++.+| .|..||.|.|..+.+ .-+|..+++|+ +|+.|.++.+.+-+||..++
T Consensus 103 ~levldltynnl~e~~lpgnff-~m~tlralyl~dndf---------e~lp~dvg~lt-~lqil~lrdndll~lpkeig~ 171 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDF---------EILPPDVGKLT-NLQILSLRDNDLLSLPKEIGD 171 (264)
T ss_pred hhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCc---------ccCChhhhhhc-ceeEEeeccCchhhCcHHHHH
Confidence 3444444444444444555544 678899999999987 78999999999 99999999999999999999
Q ss_pred CCCceEEEcCCCccccccccc
Q 036903 301 TDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~lP~~i 321 (323)
|..|+.|.+++|+++.+|.++
T Consensus 172 lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHhcccceeeecChhh
Confidence 999999999999999999875
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.15 E-value=4.8e-07 Score=85.68 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=50.9
Q ss_pred cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCc-cCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCc
Q 036903 236 IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGL-DYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSN 313 (323)
Q Consensus 236 l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i-~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~ 313 (323)
+...+..+...|++-||+|++|++ ..+|.++ -+|. .|-||+|++|+++.||+.+. |.+||+|+|++|.
T Consensus 115 L~EvP~~LE~AKn~iVLNLS~N~I---------etIPn~lfinLt-DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 115 LREVPTNLEYAKNSIVLNLSYNNI---------ETIPNSLFINLT-DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred hhhcchhhhhhcCcEEEEcccCcc---------ccCCchHHHhhH-hHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence 334455566777777777777766 5566653 3566 67778888888888888886 8888888887773
Q ss_pred -----cccccc
Q 036903 314 -----VELLWE 319 (323)
Q Consensus 314 -----i~~lP~ 319 (323)
+++||.
T Consensus 185 L~hfQLrQLPs 195 (1255)
T KOG0444|consen 185 LNHFQLRQLPS 195 (1255)
T ss_pred hhHHHHhcCcc
Confidence 456664
No 10
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=3.2e-06 Score=83.45 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=65.0
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
..+..+.++++|+.|+|++|.+. ..+|..++.++ +|++|+|++|.+. .+|..++ |.+|++|+|++|++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~--------g~iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIR--------GNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCccc--------CcCChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 44567899999999999999872 47898999999 9999999999887 7899998 999999999999876
Q ss_pred -cccccc
Q 036903 316 -LLWEEK 321 (323)
Q Consensus 316 -~lP~~i 321 (323)
.+|..+
T Consensus 504 g~iP~~l 510 (623)
T PLN03150 504 GRVPAAL 510 (623)
T ss_pred ccCChHH
Confidence 777654
No 11
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=2e-06 Score=53.59 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=35.2
Q ss_pred CCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC
Q 036903 247 TNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT 297 (323)
Q Consensus 247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~ 297 (323)
++|++|+++++.+ ..+|..+++|+ +|++|++++|.++++|.
T Consensus 1 ~~L~~L~l~~N~i---------~~l~~~l~~l~-~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQI---------TDLPPELSNLP-NLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS----------SSHGGHGTTCT-TSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCC---------cccCchHhCCC-CCCEEEecCCCCCCCcC
Confidence 5799999999988 78888899999 99999999999987764
No 12
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.98 E-value=4.2e-06 Score=84.99 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=56.3
Q ss_pred CCCceEEEEeCCC--CCCCCCCCcccccCCC-ccCcCCCceeEEecCC-CCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903 246 MTNLRLLKFYLPN--RRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGY-PLRTLPTNLI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 246 ~~~LrvL~L~~~~--~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~-~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
.+.|++|-+.++. + ...+.. +..++ .||+|||++| .+.+||.+|+ |.|||+|++++|.|++||.+
T Consensus 544 ~~~L~tLll~~n~~~l---------~~is~~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWL---------LEISGEFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred CCccceEEEeecchhh---------hhcCHHHHhhCc-ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH
Confidence 3468999888775 3 334333 77799 9999999988 8999999998 99999999999999999998
Q ss_pred cC
Q 036903 321 KK 322 (323)
Q Consensus 321 i~ 322 (323)
++
T Consensus 614 l~ 615 (889)
T KOG4658|consen 614 LG 615 (889)
T ss_pred HH
Confidence 64
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.85 E-value=4.1e-06 Score=75.59 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=61.6
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
...+.+.+|.||||.++.+ +.+|+.++.|+ +|.|||+++|.|..||.+.| | ||+.|-+.+|.++++-.
T Consensus 246 e~~~~L~~l~vLDLRdNkl---------ke~Pde~clLr-sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKL---------KEVPDEICLLR-SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred HHhcccccceeeecccccc---------ccCchHHHHhh-hhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHH
Confidence 4456899999999999987 88999999998 99999999999999999998 8 99999999998876644
Q ss_pred c
Q 036903 320 E 320 (323)
Q Consensus 320 ~ 320 (323)
+
T Consensus 315 ~ 315 (565)
T KOG0472|consen 315 E 315 (565)
T ss_pred H
Confidence 3
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.80 E-value=2.4e-06 Score=81.15 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=62.7
Q ss_pred cccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCC
Q 036903 234 RDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCS 312 (323)
Q Consensus 234 ~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~ 312 (323)
|++.-.+.++..+.+|+-+||+.|++ ..+|+.+-+|+ +||.|+|++|.|++|.-.++ ..+|++|+++.|
T Consensus 209 RTl~N~Ptsld~l~NL~dvDlS~N~L---------p~vPecly~l~-~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 209 RTLDNIPTSLDDLHNLRDVDLSENNL---------PIVPECLYKLR-NLRRLNLSGNKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred chhhcCCCchhhhhhhhhccccccCC---------CcchHHHhhhh-hhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence 44555566778888888888888876 67888888888 88888888888888888887 788888888888
Q ss_pred ccccccccc
Q 036903 313 NVELLWEEK 321 (323)
Q Consensus 313 ~i~~lP~~i 321 (323)
.+..||+.+
T Consensus 279 QLt~LP~av 287 (1255)
T KOG0444|consen 279 QLTVLPDAV 287 (1255)
T ss_pred hhccchHHH
Confidence 888888753
No 15
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.80 E-value=2.3e-05 Score=81.61 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=46.8
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc-c
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE-L 316 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~-~ 316 (323)
+..|.++++|++|+|++|.+. ..+|..++.++ +|++|+|++|.+. .+|..++ +.+|++|++++|.+. .
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLV--------GQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCc--------CcCChHHcCcC-CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 445566666666666666541 34666777777 7777777777655 5677776 777777777777654 4
Q ss_pred ccc
Q 036903 317 LWE 319 (323)
Q Consensus 317 lP~ 319 (323)
+|.
T Consensus 252 ~p~ 254 (968)
T PLN00113 252 IPS 254 (968)
T ss_pred cCh
Confidence 554
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.76 E-value=1.2e-05 Score=65.99 Aligned_cols=83 Identities=23% Similarity=0.233 Sum_probs=31.2
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCcc-CcCCCceeEEecCCCCCCCCCC--
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLD-YLPEELTYLHWHGYPLRTLPTN-- 298 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~-~L~~~Lr~L~l~~~~i~~LP~~-- 298 (323)
.++.+.+..+.+..+ +.+..+++|++|++++|.+ ..+++.+. .++ +|+.|++++|+|..+-.-
T Consensus 43 ~L~~L~Ls~N~I~~l----~~l~~L~~L~~L~L~~N~I---------~~i~~~l~~~lp-~L~~L~L~~N~I~~l~~l~~ 108 (175)
T PF14580_consen 43 KLEVLDLSNNQITKL----EGLPGLPRLKTLDLSNNRI---------SSISEGLDKNLP-NLQELYLSNNKISDLNELEP 108 (175)
T ss_dssp T--EEE-TTS--S------TT----TT--EEE--SS------------S-CHHHHHH-T-T--EEE-TTS---SCCCCGG
T ss_pred CCCEEECCCCCCccc----cCccChhhhhhcccCCCCC---------CccccchHHhCC-cCCEEECcCCcCCChHHhHH
Confidence 445554444433322 2356677788888877776 44443342 467 788888887777776543
Q ss_pred CC-CCCceEEEcCCCcccccc
Q 036903 299 LI-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 299 i~-L~~L~~L~l~~~~i~~lP 318 (323)
+. +++|++|++.+|.+.+-|
T Consensus 109 L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp GGG-TT--EEE-TT-GGGGST
T ss_pred HHcCCCcceeeccCCcccchh
Confidence 23 777888888877766543
No 17
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.68 E-value=4.4e-05 Score=79.58 Aligned_cols=74 Identities=18% Similarity=0.114 Sum_probs=59.4
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
..+..|.++++|+.|+|++|.+. ..+|..++.++ +|++|++++|.+. .+|..++ +++|++|++.+|.+.
T Consensus 203 ~~p~~l~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 203 QIPRELGQMKSLKWIYLGYNNLS--------GEIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred cCChHHcCcCCccEEECcCCccC--------CcCChhHhcCC-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 34567788999999999888762 46788888898 9999999988775 6788887 999999999998775
Q ss_pred -ccccc
Q 036903 316 -LLWEE 320 (323)
Q Consensus 316 -~lP~~ 320 (323)
.+|..
T Consensus 274 ~~~p~~ 279 (968)
T PLN00113 274 GPIPPS 279 (968)
T ss_pred ccCchh
Confidence 56654
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.67 E-value=2.7e-05 Score=52.22 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=37.2
Q ss_pred CceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccccccccc
Q 036903 281 ELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 281 ~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP~~i 321 (323)
+|++|++++|++..+|.. ++ +++|++|++++|.++.+|.+.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~ 44 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA 44 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH
Confidence 799999999999999975 56 999999999999999998753
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.49 E-value=0.0001 Score=60.53 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=29.1
Q ss_pred CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCccccc
Q 036903 245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVELL 317 (323)
Q Consensus 245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~~l 317 (323)
.+.+|++|+|++|.+ ..++ .+..|+ +|+.|++++|.|++++..+ . +++|++|++++|+|..+
T Consensus 40 ~l~~L~~L~Ls~N~I---------~~l~-~l~~L~-~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQI---------TKLE-GLPGLP-RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp T-TT--EEE-TTS-----------S--T-T----T-T--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred hhcCCCEEECCCCCC---------cccc-CccChh-hhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh
Confidence 567899999999987 5554 577888 9999999999999997765 4 89999999999988765
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.49 E-value=0.0002 Score=75.84 Aligned_cols=67 Identities=28% Similarity=0.299 Sum_probs=41.6
Q ss_pred hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCCCCCCCCCCCceEEEcCCC-cccccc
Q 036903 243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRTLPTNLITDKLVVLNLPCS-NVELLW 318 (323)
Q Consensus 243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~LP~~i~L~~L~~L~l~~~-~i~~lP 318 (323)
+..+++|+.|+|.+|.. ...+|.+++.|+ +|++|++++| .++.+|..+++++|++|++++| .++.+|
T Consensus 653 ls~l~~Le~L~L~~c~~--------L~~lp~si~~L~-~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 653 LSMATNLETLKLSDCSS--------LVELPSSIQYLN-KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred cccCCcccEEEecCCCC--------ccccchhhhccC-CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc
Confidence 44455566666655542 255677777777 7777777776 6777777666666666666665 344444
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.43 E-value=1.3e-05 Score=72.44 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=59.6
Q ss_pred hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCcc-CcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903 242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLD-YLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~-~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
.|.++..|+-|.+..+.+ .-+|..++ .|. +|..|||+.|+++++|..++ |++|+.||+++|.|..||-
T Consensus 223 ef~gcs~L~Elh~g~N~i---------~~lpae~~~~L~-~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQI---------EMLPAEHLKHLN-SLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred CCCccHHHHHHHhcccHH---------HhhHHHHhcccc-cceeeeccccccccCchHHHHhhhhhhhcccCCccccCCc
Confidence 566777777777777765 67888776 787 99999999999999999999 9999999999999999996
Q ss_pred c
Q 036903 320 E 320 (323)
Q Consensus 320 ~ 320 (323)
+
T Consensus 293 s 293 (565)
T KOG0472|consen 293 S 293 (565)
T ss_pred c
Confidence 5
No 22
>PLN03150 hypothetical protein; Provisional
Probab=97.25 E-value=0.00022 Score=70.56 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=56.6
Q ss_pred CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc-cccccc
Q 036903 248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE-LLWEEK 321 (323)
Q Consensus 248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~-~lP~~i 321 (323)
.++.|+|.++.+. ..+|..++.|+ +|++|+|++|.+. .+|..++ +.+|++|+|++|++. .+|+.+
T Consensus 419 ~v~~L~L~~n~L~--------g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l 486 (623)
T PLN03150 419 FIDGLGLDNQGLR--------GFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486 (623)
T ss_pred EEEEEECCCCCcc--------ccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence 4788999998862 57899999999 9999999999887 8999998 999999999999887 677643
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.17 E-value=6.8e-05 Score=74.29 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=44.3
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP 318 (323)
+..+..+..|+.|.++.+.+ ..+|.++.++. +|+||.|.+|.+..+|.++. +++|+.|+++.|.....|
T Consensus 61 p~~it~l~~L~~ln~s~n~i---------~~vp~s~~~~~-~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~P 130 (1081)
T KOG0618|consen 61 PIQITLLSHLRQLNLSRNYI---------RSVPSSCSNMR-NLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIP 130 (1081)
T ss_pred CchhhhHHHHhhcccchhhH---------hhCchhhhhhh-cchhheeccchhhcCchhHHhhhcccccccchhccCCCc
Confidence 33445555566666665554 55666666666 67777776666667777765 677777777766666665
Q ss_pred c
Q 036903 319 E 319 (323)
Q Consensus 319 ~ 319 (323)
.
T Consensus 131 l 131 (1081)
T KOG0618|consen 131 L 131 (1081)
T ss_pred h
Confidence 4
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.03 E-value=0.00086 Score=67.39 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=35.9
Q ss_pred CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccccccc
Q 036903 248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP~~ 320 (323)
+|+.|+|++|.+ ..+|..+. . +|++|++++|++..+|..+. .+|++|++++|+++.+|.+
T Consensus 242 ~L~~L~Ls~N~L---------~~LP~~l~--s-~L~~L~Ls~N~L~~LP~~l~-~sL~~L~Ls~N~Lt~LP~~ 301 (754)
T PRK15370 242 TIQEMELSINRI---------TELPERLP--S-ALQSLDLFHNKISCLPENLP-EELRYLSVYDNSIRTLPAH 301 (754)
T ss_pred cccEEECcCCcc---------CcCChhHh--C-CCCEEECcCCccCccccccC-CCCcEEECCCCccccCccc
Confidence 455555555544 34554442 2 67777777777777766542 4677777777777766653
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.94 E-value=0.0012 Score=66.45 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=47.4
Q ss_pred CCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCccccccccc
Q 036903 247 TNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP~~i 321 (323)
++|+.|++++|.+ ..+|..+. .+|+.|+|++|++..+|..+. .+|+.|++++|+++.+|+++
T Consensus 220 ~nL~~L~Ls~N~L---------tsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~-s~L~~L~Ls~N~L~~LP~~l 281 (754)
T PRK15370 220 GNIKTLYANSNQL---------TSIPATLP---DTIQEMELSINRITELPERLP-SALQSLDLFHNKISCLPENL 281 (754)
T ss_pred cCCCEEECCCCcc---------ccCChhhh---ccccEEECcCCccCcCChhHh-CCCCEEECcCCccCcccccc
Confidence 4788888888776 56676543 378888888888888887653 57899999999998888754
No 26
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.88 E-value=0.0012 Score=61.14 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=36.4
Q ss_pred CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCCCCCCCCCCCceEEEcCCC---cccccccccC
Q 036903 248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRTLPTNLITDKLVVLNLPCS---NVELLWEEKK 322 (323)
Q Consensus 248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~LP~~i~L~~L~~L~l~~~---~i~~lP~~i~ 322 (323)
+|+.|.+.+|.. ...+|+.+ +.+|++|++++| .+..||.+ |++|++.++ .+..||.+++
T Consensus 73 sLtsL~Lsnc~n--------LtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s-----Le~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 73 ELTEITIENCNN--------LTTLPGSI---PEGLEKLTVCHCPEISGLPES-----VRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred CCcEEEccCCCC--------cccCCchh---hhhhhheEccCcccccccccc-----cceEEeCCCCCcccccCcchHh
Confidence 477777777653 24556544 337888888877 77777765 444445443 3677777654
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.82 E-value=0.00039 Score=60.88 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=39.6
Q ss_pred CCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccc
Q 036903 246 MTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 246 ~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~ 316 (323)
-+.|..|||++|.+ ..+.+++.-+| .+|.|++++|.|..+-+ .. |++|+.|||++|.+.+
T Consensus 283 Wq~LtelDLS~N~I---------~~iDESvKL~P-kir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~ 343 (490)
T KOG1259|consen 283 WQELTELDLSGNLI---------TQIDESVKLAP-KLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE 343 (490)
T ss_pred Hhhhhhccccccch---------hhhhhhhhhcc-ceeEEeccccceeeehh-hhhcccceEeecccchhHh
Confidence 35566777777765 55666666666 77777777776666655 44 7777777777765544
No 28
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.74 E-value=0.00039 Score=36.18 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=7.8
Q ss_pred ceeEEecCCCCCCCCCC
Q 036903 282 LTYLHWHGYPLRTLPTN 298 (323)
Q Consensus 282 Lr~L~l~~~~i~~LP~~ 298 (323)
|++|++++|+++++|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444444
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.73 E-value=0.0003 Score=66.50 Aligned_cols=63 Identities=27% Similarity=0.292 Sum_probs=46.0
Q ss_pred CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903 248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
-|+||-+++|.+ +.+|..|+-++ .|..|+.+.|++..+|..++ |..|+.|+++.|++..||++
T Consensus 144 pLkvli~sNNkl---------~~lp~~ig~~~-tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E 207 (722)
T KOG0532|consen 144 PLKVLIVSNNKL---------TSLPEEIGLLP-TLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE 207 (722)
T ss_pred cceeEEEecCcc---------ccCCcccccch-hHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH
Confidence 367777777765 66777777666 77777777777777777776 77777777777777777764
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.72 E-value=0.00038 Score=69.20 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=54.4
Q ss_pred hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903 242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+..+.-+|++||++++.+ .++|..|..+. +|+.|+++.|.|.++|.+++ +.+|++|+|.+|.++.+|.+
T Consensus 40 ~~~~~v~L~~l~lsnn~~---------~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~ 109 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQI---------SSFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS 109 (1081)
T ss_pred HhhheeeeEEeecccccc---------ccCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh
Confidence 333333388888888876 67888888888 88888888888888888776 88888888888888888865
Q ss_pred c
Q 036903 321 K 321 (323)
Q Consensus 321 i 321 (323)
+
T Consensus 110 ~ 110 (1081)
T KOG0618|consen 110 I 110 (1081)
T ss_pred H
Confidence 4
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.66 E-value=0.0032 Score=63.31 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=10.5
Q ss_pred CceEEEcCCCccccccc
Q 036903 303 KLVVLNLPCSNVELLWE 319 (323)
Q Consensus 303 ~L~~L~l~~~~i~~lP~ 319 (323)
+|++|+|++|+++.+|.
T Consensus 343 ~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 343 GLQELSVSDNQLASLPT 359 (788)
T ss_pred ccceEecCCCccCCCCC
Confidence 56666666666666553
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=96.63 E-value=0.00031 Score=66.36 Aligned_cols=71 Identities=23% Similarity=0.228 Sum_probs=59.6
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP 318 (323)
+..+..+..||.|.+..++. ..+|..++.|+ |..||++.|++..||-.|. +++||+|-|.+|-++.-|
T Consensus 182 psql~~l~slr~l~vrRn~l---------~~lp~El~~Lp--Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 182 PSQLGYLTSLRDLNVRRNHL---------EDLPEELCSLP--LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hHHhhhHHHHHHHHHhhhhh---------hhCCHHHhCCc--eeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 34456777888888888876 78899988875 8899999999999999997 999999999999998877
Q ss_pred ccc
Q 036903 319 EEK 321 (323)
Q Consensus 319 ~~i 321 (323)
..|
T Consensus 251 AqI 253 (722)
T KOG0532|consen 251 AQI 253 (722)
T ss_pred HHH
Confidence 643
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.56 E-value=0.0006 Score=63.67 Aligned_cols=63 Identities=29% Similarity=0.241 Sum_probs=47.6
Q ss_pred CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903 248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+|+.|+++++.+ ..+|..++.++ +|+.|++++|++.++|...+ +.+|+.|+++++.+..+|..
T Consensus 141 nL~~L~l~~N~i---------~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~ 204 (394)
T COG4886 141 NLKELDLSDNKI---------ESLPSPLRNLP-NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE 204 (394)
T ss_pred hcccccccccch---------hhhhhhhhccc-cccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchh
Confidence 677777777766 56666777777 77888887777777877774 77777778877777777764
No 34
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.50 E-value=0.0014 Score=31.69 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=7.4
Q ss_pred CceEEEcCCCcccccc
Q 036903 303 KLVVLNLPCSNVELLW 318 (323)
Q Consensus 303 ~L~~L~l~~~~i~~lP 318 (323)
+|++|+|++|++++||
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666655
No 35
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.50 E-value=0.002 Score=61.31 Aligned_cols=82 Identities=18% Similarity=0.146 Sum_probs=51.5
Q ss_pred eecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCce
Q 036903 228 LDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLV 305 (323)
Q Consensus 228 ~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~ 305 (323)
+++++.+.-.+....|.++++|+.+.+..|.+ +.+|...+..- ||..|+|.+|.|.++-.+ .+ +.-|+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L---------t~IP~f~~~sg-hl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL---------TRIPRFGHESG-HLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchh---------hhccccccccc-ceeEEeeeccccccccHHHHHhHhhhh
Confidence 45555545566677788888888888887765 56666555554 666666666655555433 34 55666
Q ss_pred EEEcCCCccccccc
Q 036903 306 VLNLPCSNVELLWE 319 (323)
Q Consensus 306 ~L~l~~~~i~~lP~ 319 (323)
+|||+.|.|.++|.
T Consensus 153 slDLSrN~is~i~~ 166 (873)
T KOG4194|consen 153 SLDLSRNLISEIPK 166 (873)
T ss_pred hhhhhhchhhcccC
Confidence 66666666655554
No 36
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.44 E-value=0.037 Score=49.74 Aligned_cols=153 Identities=15% Similarity=0.072 Sum_probs=91.4
Q ss_pred CceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhcC
Q 036903 14 GSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHR 93 (323)
Q Consensus 14 gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~~ 93 (323)
.+-|.+|||...+....-......+.+++++.++..+++.+.+...... --.+....|++.|+|.|-.+..++..+
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~-- 205 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRV-- 205 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHH--
Confidence 5667778887655433210123568999999999999999887533221 113567889999999997665554432
Q ss_pred CChHHHHHHHHHhhcC--C---cccHHHHHHHHhcCCChhhHhHhh-hhcccCCC-CCHHHHHHHHhhcch----HHH-H
Q 036903 94 KSKLDWENALENLKRS--S---DFEIYDVLKISYNELNPEEKSLFL-DIACFFAG-EDKNLVTKILDDSNY----VLN-V 161 (323)
Q Consensus 94 ~~~~~w~~~l~~l~~~--~---~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~-~~~~~l~~~w~~~g~----~l~-~ 161 (323)
|... ...... . .......+...|..+++..+..+. ....+..+ +..+.+......... .++ .
T Consensus 206 -----~~~a-~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~ 279 (305)
T TIGR00635 206 -----RDFA-QVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPY 279 (305)
T ss_pred -----HHHH-HHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHH
Confidence 1110 000000 0 011222255667888888877665 54666544 555555554433333 567 6
Q ss_pred hhhCCcceEcCCCeE
Q 036903 162 LVDKSLLRISRYNKL 176 (323)
Q Consensus 162 L~~~~ll~~~~~~~~ 176 (323)
|++++|+.....|++
T Consensus 280 Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 280 LLQIGFLQRTPRGRI 294 (305)
T ss_pred HHHcCCcccCCchhh
Confidence 999999987655543
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.39 E-value=0.00024 Score=64.29 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=58.2
Q ss_pred EeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecC-CCCCCCCCCC-C-CCC
Q 036903 227 FLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHG-YPLRTLPTNL-I-TDK 303 (323)
Q Consensus 227 ~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~-~~i~~LP~~i-~-L~~ 303 (323)
.++++....-.+++.+|+.+++||.|||+.|.+. ..-|+.+..|+ .|-.|-+-+ |+|+.||... + |..
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is--------~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~s 141 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS--------FIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSS 141 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchh--------hcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHH
Confidence 3444444445678899999999999999999873 33467777777 555555544 6888888874 4 888
Q ss_pred ceEEEcCCCcccccc
Q 036903 304 LVVLNLPCSNVELLW 318 (323)
Q Consensus 304 L~~L~l~~~~i~~lP 318 (323)
||-|.+.-|++.-++
T Consensus 142 lqrLllNan~i~Cir 156 (498)
T KOG4237|consen 142 LQRLLLNANHINCIR 156 (498)
T ss_pred HHHHhcChhhhcchh
Confidence 777777666654433
No 38
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.39 E-value=0.0018 Score=33.63 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=18.1
Q ss_pred CceEEEcCCCcccccccccC
Q 036903 303 KLVVLNLPCSNVELLWEEKK 322 (323)
Q Consensus 303 ~L~~L~l~~~~i~~lP~~i~ 322 (323)
+|++||+++|+++++|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 68999999999999999864
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.34 E-value=0.0032 Score=63.32 Aligned_cols=56 Identities=21% Similarity=0.131 Sum_probs=39.4
Q ss_pred CCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903 247 TNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
.+|+.|++++|.+ ..+|... . +|++|++++|.++.||.+++ +.+|+.|+|++|.+.
T Consensus 402 s~L~~LdLS~N~L---------ssIP~l~---~-~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 402 SELKELMVSGNRL---------TSLPMLP---S-GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cCCCEEEccCCcC---------CCCCcch---h-hhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 3456666666655 3455422 2 67778888888888888886 888888888888765
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.33 E-value=0.0019 Score=60.26 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=61.8
Q ss_pred hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCc-CCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903 242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYL-PEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L-~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
....++.+..|++.++.+ .++|..++.+ . +|++|+++++.+..+|..++ +++|+.|++.+|.+.++|.
T Consensus 111 ~~~~~~~l~~L~l~~n~i---------~~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~ 180 (394)
T COG4886 111 ELLELTNLTSLDLDNNNI---------TDIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPK 180 (394)
T ss_pred hhhcccceeEEecCCccc---------ccCccccccchh-hcccccccccchhhhhhhhhccccccccccCCchhhhhhh
Confidence 345567899999999987 7888888877 5 89999999999999998888 9999999999999999998
Q ss_pred cc
Q 036903 320 EK 321 (323)
Q Consensus 320 ~i 321 (323)
..
T Consensus 181 ~~ 182 (394)
T COG4886 181 LL 182 (394)
T ss_pred hh
Confidence 53
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.33 E-value=0.00098 Score=60.46 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=53.3
Q ss_pred CchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcccc
Q 036903 239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~~ 316 (323)
+...|.++++||+|+|++|.+. ..-+.++..+. +++.|.|.+|+++.+.+.+ . |..|++|+|.+|+|+.
T Consensus 266 P~~cf~~L~~L~~lnlsnN~i~--------~i~~~aFe~~a-~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 266 PAKCFKKLPNLRKLNLSNNKIT--------RIEDGAFEGAA-ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred hHHHHhhcccceEeccCCCccc--------hhhhhhhcchh-hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE
Confidence 4466999999999999999872 22355677777 8888888888888777765 4 8888888888887765
Q ss_pred c
Q 036903 317 L 317 (323)
Q Consensus 317 l 317 (323)
+
T Consensus 337 ~ 337 (498)
T KOG4237|consen 337 V 337 (498)
T ss_pred E
Confidence 4
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.27 E-value=0.002 Score=56.58 Aligned_cols=38 Identities=24% Similarity=0.177 Sum_probs=20.8
Q ss_pred CceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccccc
Q 036903 281 ELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 281 ~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP 318 (323)
+.+.|.|++|.|+.|..--.|+.|..||+++|+|+++-
T Consensus 353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred CEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHH
Confidence 44444444444444432222677777777777776653
No 43
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.22 E-value=0.024 Score=51.59 Aligned_cols=155 Identities=13% Similarity=0.054 Sum_probs=93.5
Q ss_pred CceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhcC
Q 036903 14 GSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHR 93 (323)
Q Consensus 14 gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~~ 93 (323)
.+-|..|||...+...........+.+++++.++..+++.+.+......- -++....|++.|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~~-- 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRRV-- 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHHH--
Confidence 45677788766554332101235789999999999999998875432211 23568899999999996554444432
Q ss_pred CChHHHHHHHHH--hhcCCcccHHHHHHHHhcCCChhhHhHhh-hhcccCCC-CCHHHHHHHHhhcch----HHH-Hhhh
Q 036903 94 KSKLDWENALEN--LKRSSDFEIYDVLKISYNELNPEEKSLFL-DIACFFAG-EDKNLVTKILDDSNY----VLN-VLVD 164 (323)
Q Consensus 94 ~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~-~~~~~l~~~w~~~g~----~l~-~L~~ 164 (323)
..|...... ............+...+..|++..+..+. ....|+.+ +..+.+...+..... .++ .|++
T Consensus 227 ---~~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 227 ---RDFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQ 303 (328)
T ss_pred ---HHHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHH
Confidence 122211100 00001122334456677888888888775 66667655 666666555433333 455 8999
Q ss_pred CCcceEcCCCe
Q 036903 165 KSLLRISRYNK 175 (323)
Q Consensus 165 ~~ll~~~~~~~ 175 (323)
.+|++....|+
T Consensus 304 ~~li~~~~~gr 314 (328)
T PRK00080 304 QGFIQRTPRGR 314 (328)
T ss_pred cCCcccCCchH
Confidence 99998765553
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.11 E-value=0.0028 Score=63.23 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=51.0
Q ss_pred cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-
Q 036903 220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN- 298 (323)
Q Consensus 220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~- 298 (323)
.+.++++.+..... ....+...+.+|++|+.||++++++ ..+ .+|+.|+ +|+.|.+++-.++.-+.-
T Consensus 147 LPsL~sL~i~~~~~-~~~dF~~lc~sFpNL~sLDIS~TnI---------~nl-~GIS~Lk-nLq~L~mrnLe~e~~~~l~ 214 (699)
T KOG3665|consen 147 LPSLRSLVISGRQF-DNDDFSQLCASFPNLRSLDISGTNI---------SNL-SGISRLK-NLQVLSMRNLEFESYQDLI 214 (699)
T ss_pred CcccceEEecCcee-cchhHHHHhhccCccceeecCCCCc---------cCc-HHHhccc-cHHHHhccCCCCCchhhHH
Confidence 44566665543322 1112344567899999999999987 334 5677777 777777766555544432
Q ss_pred --CCCCCceEEEcCCCc
Q 036903 299 --LITDKLVVLNLPCSN 313 (323)
Q Consensus 299 --i~L~~L~~L~l~~~~ 313 (323)
++|++|++||++...
T Consensus 215 ~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhcccCCCeeeccccc
Confidence 347777777776653
No 45
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.09 E-value=0.00049 Score=53.51 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=62.6
Q ss_pred ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903 237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 237 ~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
.+++.+-.+++.+..|+|+++.+ ..+|..+..++ .||.|+++.|.+...|.-|- |.+|-.|+..++.+.
T Consensus 67 ~fp~kft~kf~t~t~lNl~~nei---------sdvPeE~Aam~-aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 67 KFPKKFTIKFPTATTLNLANNEI---------SDVPEELAAMP-ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hCCHHHhhccchhhhhhcchhhh---------hhchHHHhhhH-HhhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 34445556677899999999987 78999999999 99999999999999999986 999999999999888
Q ss_pred cccc
Q 036903 316 LLWE 319 (323)
Q Consensus 316 ~lP~ 319 (323)
++|-
T Consensus 137 eid~ 140 (177)
T KOG4579|consen 137 EIDV 140 (177)
T ss_pred cCcH
Confidence 8874
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.98 E-value=0.0037 Score=58.89 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=48.9
Q ss_pred hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCccccccc
Q 036903 243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP~ 319 (323)
+..+.+|++|+++++.+ .++ ..+..|+ .|+.|++++|.|..++..-.|.+|+.|++.+|.+..++.
T Consensus 114 l~~~~~L~~L~ls~N~I---------~~i-~~l~~l~-~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKI---------TKL-EGLSTLT-LLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred hhhhhcchheecccccc---------ccc-cchhhcc-chhhheeccCcchhccCCccchhhhcccCCcchhhhhhh
Confidence 56678888888888876 444 3567777 788888888888777766558888888888887766654
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.93 E-value=0.0015 Score=65.14 Aligned_cols=84 Identities=17% Similarity=0.128 Sum_probs=60.1
Q ss_pred eEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-C
Q 036903 223 IAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-T 301 (323)
Q Consensus 223 ~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L 301 (323)
++.+-+.....-.-.+....-..++.||.|.+.+-.+ ....+..-..++| +|+.||+|+|++..| ..|+ |
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-------~~~dF~~lc~sFp-NL~sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-------DNDDFSQLCASFP-NLRSLDISGTNISNL-SGISRL 194 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCcee-------cchhHHHHhhccC-ccceeecCCCCccCc-HHHhcc
Confidence 4444333333223344555567899999999998766 2344445566788 999999999999999 7777 9
Q ss_pred CCceEEEcCCCccc
Q 036903 302 DKLVVLNLPCSNVE 315 (323)
Q Consensus 302 ~~L~~L~l~~~~i~ 315 (323)
+|||+|.+++=.++
T Consensus 195 knLq~L~mrnLe~e 208 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFE 208 (699)
T ss_pred ccHHHHhccCCCCC
Confidence 99999999875554
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.82 E-value=0.0055 Score=52.69 Aligned_cols=69 Identities=23% Similarity=0.281 Sum_probs=50.0
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC---C-CCCceEEEcCCCcccc
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL---I-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i---~-L~~L~~L~l~~~~i~~ 316 (323)
..|-.+++|+.|+++.|... ....++-....++ +|++|++++|.|.. ++++ . |.||..|++.+|....
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~------~~~~l~vl~e~~P-~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRR------VSGGLEVLAEKAP-NLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred ccCCCcchhhhhcccCCccc------ccccceehhhhCC-ceeEEeecCCcccc-ccccchhhhhcchhhhhcccCCccc
Confidence 34567789999999998431 1244555566678 99999999998775 4444 3 7888899999997654
Q ss_pred c
Q 036903 317 L 317 (323)
Q Consensus 317 l 317 (323)
+
T Consensus 131 l 131 (260)
T KOG2739|consen 131 L 131 (260)
T ss_pred c
Confidence 3
No 49
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.81 E-value=0.0051 Score=29.72 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=9.4
Q ss_pred CceeEEecCCCCCCCC
Q 036903 281 ELTYLHWHGYPLRTLP 296 (323)
Q Consensus 281 ~Lr~L~l~~~~i~~LP 296 (323)
+|+.|++++|++++||
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 6778888888777776
No 50
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=95.80 E-value=0.0039 Score=56.13 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=54.9
Q ss_pred ceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CC
Q 036903 221 DVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PT 297 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~ 297 (323)
..++.+.+..+.+.. .......+..+++|+.|++++|.+.. .....++..+..++ +|++|++++|.+... +.
T Consensus 165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~~~~~~-~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD----EGASALAETLASLK-SLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh----HHHHHHHHHhcccC-CCCEEecCCCcCchHHHH
Confidence 356666555443321 11122345566789999998887620 01123455677777 899999999877641 11
Q ss_pred CC------CCCCceEEEcCCCccc
Q 036903 298 NL------ITDKLVVLNLPCSNVE 315 (323)
Q Consensus 298 ~i------~L~~L~~L~l~~~~i~ 315 (323)
.+ ....|+.|++.+|.++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCC
Confidence 11 1478999999999774
No 51
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.78 E-value=0.0042 Score=59.24 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=43.2
Q ss_pred cccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC--CCCCceEEEcCC
Q 036903 234 RDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL--ITDKLVVLNLPC 311 (323)
Q Consensus 234 ~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i--~L~~L~~L~l~~ 311 (323)
+.-.++...|+++++|+.|||..|.+ ..... -.+..|+ .|+.|.|..|+|..|-+.. ++.++++|+|..
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~i-------rive~-ltFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~ 278 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRI-------RIVEG-LTFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET 278 (873)
T ss_pred cccccCHHHhhhcchhhhhhccccce-------eeehh-hhhcCch-hhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence 33344555566666666666665554 11111 2345555 6666666666666666654 366666666666
Q ss_pred Cccccccc
Q 036903 312 SNVELLWE 319 (323)
Q Consensus 312 ~~i~~lP~ 319 (323)
|++..+-+
T Consensus 279 N~l~~vn~ 286 (873)
T KOG4194|consen 279 NRLQAVNE 286 (873)
T ss_pred chhhhhhc
Confidence 66655543
No 52
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.58 E-value=0.0074 Score=32.62 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=13.6
Q ss_pred CCCceEEEcCCCcccccccc
Q 036903 301 TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~lP~~ 320 (323)
|.+|++|+|.+|.|+.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45667777777777777765
No 53
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.58 E-value=0.0074 Score=32.62 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=13.6
Q ss_pred CCCceEEEcCCCcccccccc
Q 036903 301 TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~lP~~ 320 (323)
|.+|++|+|.+|.|+.+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45667777777777777765
No 54
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=95.34 E-value=0.013 Score=29.41 Aligned_cols=20 Identities=55% Similarity=0.880 Sum_probs=18.5
Q ss_pred CceEEEcCCCcccccccccC
Q 036903 303 KLVVLNLPCSNVELLWEEKK 322 (323)
Q Consensus 303 ~L~~L~l~~~~i~~lP~~i~ 322 (323)
+|..|+++++++++||+|+|
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58899999999999999987
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.19 E-value=0.0086 Score=56.40 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=40.7
Q ss_pred hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccccc
Q 036903 243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP 318 (323)
+..+++|..|++.++.+ .++...+..++ +|++|++++|.|+.+...-.|..|+.|++.+|.|..++
T Consensus 91 l~~~~~l~~l~l~~n~i---------~~i~~~l~~~~-~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~ 156 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKI---------EKIENLLSSLV-NLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS 156 (414)
T ss_pred cccccceeeeeccccch---------hhcccchhhhh-cchheeccccccccccchhhccchhhheeccCcchhcc
Confidence 45566666666666665 44443355666 66677777666666665544666666676666665543
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.18 E-value=0.0022 Score=49.95 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=57.5
Q ss_pred hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903 243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+.+...|...+|++|.+ .++|+.+...+..+..|+|++|.|..+|..+. +..|+.|+++.|.+...|+-
T Consensus 49 l~~~~el~~i~ls~N~f---------k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGF---------KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred HhCCceEEEEecccchh---------hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHH
Confidence 35566788899999987 77888765443378899999999999999997 99999999999999888863
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.02 E-value=0.044 Score=50.97 Aligned_cols=12 Identities=17% Similarity=0.013 Sum_probs=9.2
Q ss_pred CCceEEEEeCCC
Q 036903 247 TNLRLLKFYLPN 258 (323)
Q Consensus 247 ~~LrvL~L~~~~ 258 (323)
.+|+.|++.+|.
T Consensus 94 ~nLe~L~Ls~Cs 105 (426)
T PRK15386 94 EGLEKLTVCHCP 105 (426)
T ss_pred hhhhheEccCcc
Confidence 478888888773
No 58
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.94 E-value=0.16 Score=50.94 Aligned_cols=175 Identities=16% Similarity=0.195 Sum_probs=110.6
Q ss_pred CCCCCCCceEEEEcCChhhHhhcCCC-CcceEEc----CCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903 8 LDRFGPGSRIIVTTRDKRVLDNFGVP-NTNIYKV----RGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL 82 (323)
Q Consensus 8 ~~~~~~gs~IlvTTR~~~v~~~~~~~-~~~~~~l----~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 82 (323)
++...+|-..+||||+.--...-... .+...++ =.++.+|+-++|.......-+ ..-.+.+.+..+|.+-
T Consensus 154 l~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-----~~~~~~L~~~teGW~~ 228 (894)
T COG2909 154 LKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-----AADLKALYDRTEGWAA 228 (894)
T ss_pred HHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-----hHHHHHHHhhcccHHH
Confidence 34456678899999987432211100 1112222 358899999999877411111 2346789999999999
Q ss_pred hHHHHhhhhcCC-ChHHHHHHHHHhhcCCcccHHH-HHHHHhcCCChhhHhHhhhhcccCCCCCHHHHHHHHhhcch---
Q 036903 83 ALRVLGSFLHRK-SKLDWENALENLKRSSDFEIYD-VLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNY--- 157 (323)
Q Consensus 83 Ai~~ig~~L~~~-~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~cfl~~s~fp~~~~~~~l~~~w~~~g~--- 157 (323)
|+..++=.+++. +.+.--..++ .. .+.+.. ...--++.||++.|..++-||+++. +. +.|......++.
T Consensus 229 al~L~aLa~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~-~eL~~~Ltg~~ng~a 302 (894)
T COG2909 229 ALQLIALALRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FN-DELCNALTGEENGQA 302 (894)
T ss_pred HHHHHHHHccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hh-HHHHHHHhcCCcHHH
Confidence 999999888843 3222221111 11 111111 1223568999999999999999854 22 334444433333
Q ss_pred HHHHhhhCCcceEc---CCCeEEecHHHHHHHHHHHhhh
Q 036903 158 VLNVLVDKSLLRIS---RYNKLQMHDLLQEMGREIVRQE 193 (323)
Q Consensus 158 ~l~~L~~~~ll~~~---~~~~~~mh~lv~~~~~~~~~~~ 193 (323)
.+++|.+++++-.. +++.|+.|.++.||.+.....+
T Consensus 303 mLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 303 MLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 79999999998632 3668999999999998877654
No 59
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=94.66 E-value=0.011 Score=53.24 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=61.3
Q ss_pred ceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-----
Q 036903 221 DVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR----- 293 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~----- 293 (323)
..++.+.+..+.+.. .......+..+..|+.|++++|.+... ....++..+..++ +|++|++++|.+.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA----GIRALAEGLKANC-NLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH----HHHHHHHHHHhCC-CCCEEeccCCccChHHHH
Confidence 466777666555431 122344577888999999999887210 0013445566667 9999999999875
Q ss_pred CCCCCCC-CCCceEEEcCCCccc
Q 036903 294 TLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 294 ~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
.++..+. +++|++|++++|.+.
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCc
Confidence 3445565 889999999999776
No 60
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.0063 Score=55.99 Aligned_cols=88 Identities=17% Similarity=0.135 Sum_probs=56.1
Q ss_pred cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC
Q 036903 220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL 299 (323)
Q Consensus 220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i 299 (323)
.++++.++++-......... .....+.++|.|||+.|-+. .-..+.+.++.|| +|+.|+|+.|.+..--++.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~------nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFH------NWFPVLKIAEQLP-SLENLNLSSNRLSNFISSN 191 (505)
T ss_pred HHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHH------hHHHHHHHHHhcc-cchhcccccccccCCcccc
Confidence 33556666554433221111 35577888888888887541 1134455677888 8888888888665443332
Q ss_pred --C-CCCceEEEcCCCccc
Q 036903 300 --I-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 300 --~-L~~L~~L~l~~~~i~ 315 (323)
. +.+|++|.|++|.+.
T Consensus 192 ~~~~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLS 210 (505)
T ss_pred chhhhhhhheEEeccCCCC
Confidence 3 788888888888776
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.50 E-value=0.041 Score=45.77 Aligned_cols=67 Identities=21% Similarity=0.164 Sum_probs=38.8
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC---CCCCceEEEcCCCcccc
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL---ITDKLVVLNLPCSNVEL 316 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i---~L~~L~~L~l~~~~i~~ 316 (323)
+.|..+++|..|.|.+|.+ +.+...+..+..+|..|.|.+|+|.+|-+-- .++.|++|.+=+|.+++
T Consensus 58 ~~lp~l~rL~tLll~nNrI---------t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRI---------TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred ccCCCccccceEEecCCcc---------eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence 3456667777777777765 4444444443326777777776665553322 36666666666655443
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.031 Score=51.65 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=34.2
Q ss_pred hhCCCCceEEEEeCCCCCCCCCCCcccccC--CCccCcCCCceeEEecCCCCCCC--CCC-----CC-CCCceEEEcCCC
Q 036903 243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLD--QGLDYLPEELTYLHWHGYPLRTL--PTN-----LI-TDKLVVLNLPCS 312 (323)
Q Consensus 243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp--~~i~~L~~~Lr~L~l~~~~i~~L--P~~-----i~-L~~L~~L~l~~~ 312 (323)
..-++.|+.|||++|.+ ..++ ..++.|+ .|+.|+++.|.+.++ |+. .. +.+|+.|++..|
T Consensus 242 ~~i~~~L~~LdLs~N~l---------i~~~~~~~~~~l~-~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNL---------IDFDQGYKVGTLP-GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred hhhhhHHhhccccCCcc---------ccccccccccccc-chhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 34445556666666554 2222 3455566 666666666555533 333 12 556666666666
Q ss_pred cccccc
Q 036903 313 NVELLW 318 (323)
Q Consensus 313 ~i~~lP 318 (323)
+|.+.|
T Consensus 312 ~I~~w~ 317 (505)
T KOG3207|consen 312 NIRDWR 317 (505)
T ss_pred cccccc
Confidence 554433
No 63
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.72 E-value=0.01 Score=58.14 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=15.6
Q ss_pred CceeEEecCCCCCCCCCCCCCCCceEEEcCCCc
Q 036903 281 ELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSN 313 (323)
Q Consensus 281 ~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~ 313 (323)
+|..|.+++|.+++|-.--+|++|+.||++.|-
T Consensus 233 ~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred hheeeeecccHHHhhhhHHhhhhhhccchhHhh
Confidence 344555555544444333235555555555443
No 64
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.59 E-value=0.042 Score=29.55 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.5
Q ss_pred cCCCceeEEecCCCCCCCCCCC
Q 036903 278 LPEELTYLHWHGYPLRTLPTNL 299 (323)
Q Consensus 278 L~~~Lr~L~l~~~~i~~LP~~i 299 (323)
|+ +|++|+|++|.++.+|..+
T Consensus 1 L~-~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LP-NLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CC-CCCEEECCCCcCCcCCHHH
Confidence 45 8899999999999998763
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.59 E-value=0.042 Score=29.55 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.5
Q ss_pred cCCCceeEEecCCCCCCCCCCC
Q 036903 278 LPEELTYLHWHGYPLRTLPTNL 299 (323)
Q Consensus 278 L~~~Lr~L~l~~~~i~~LP~~i 299 (323)
|+ +|++|+|++|.++.+|..+
T Consensus 1 L~-~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LP-NLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CC-CCCEEECCCCcCCcCCHHH
Confidence 45 8899999999999998763
No 66
>COG3903 Predicted ATPase [General function prediction only]
Probab=93.27 E-value=0.14 Score=47.09 Aligned_cols=174 Identities=23% Similarity=0.253 Sum_probs=120.5
Q ss_pred CCceEEEEcCChhhHhhcCCCCcceEEcCCCCHH-hHHHHHHHhhhcCCC---CCCChHHHHHHHHHHhcCCchhHHHHh
Q 036903 13 PGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYS-EALELFCNFAFKQSN---CPDGLFTLSKHIVGYCKGNPLALRVLG 88 (323)
Q Consensus 13 ~gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~~---~~~~~~~~~~~i~~~c~GlPLAi~~ig 88 (323)
+.-.|+.|+|..... .....+.+.+|+.. ++.++|...+..... ....-...+..|.++..|.|+||...+
T Consensus 116 ~~~~~~atsre~~l~-----~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaa 190 (414)
T COG3903 116 PRLAILATSREAILV-----AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAA 190 (414)
T ss_pred hhhhhHHHhHhhhcc-----cccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHH
Confidence 334577788776332 24567788888877 688898877643211 122234668889999999999999999
Q ss_pred hhhcCCChHHHHHHHHH----hhcC------CcccHHHHHHHHhcCCChhhHhHhhhhcccCCCCCHHHHHHHHhhcch-
Q 036903 89 SFLHRKSKLDWENALEN----LKRS------SDFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNY- 157 (323)
Q Consensus 89 ~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~~~~l~~~w~~~g~- 157 (323)
+..+.-...+-..-+.. ++.. ......+.+.+||.-|..-.+--|--++.|...|+-+. ..|.+.|-
T Consensus 191 arv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~l--~~~~a~g~~ 268 (414)
T COG3903 191 ARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRLAVFVGGFDLGL--ALAVAAGAD 268 (414)
T ss_pred HHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcchhhhhhhhcccH--HHHHhcCCc
Confidence 99988754444333322 2222 24567889999999999999999999999988887763 23332222
Q ss_pred ----------HHHHhhhCCcceEcC---CCeEEecHHHHHHHHHHHhhh
Q 036903 158 ----------VLNVLVDKSLLRISR---YNKLQMHDLLQEMGREIVRQE 193 (323)
Q Consensus 158 ----------~l~~L~~~~ll~~~~---~~~~~mh~lv~~~~~~~~~~~ 193 (323)
.+..+++.+++...+ ...|+.-+-++.|+..+..+.
T Consensus 269 ~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 269 VDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred cccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 566778888876553 335888888888888776554
No 67
>PRK06893 DNA replication initiation factor; Validated
Probab=91.82 E-value=1.1 Score=38.61 Aligned_cols=73 Identities=10% Similarity=0.125 Sum_probs=49.2
Q ss_pred CCceEEEEcCC----------hhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903 13 PGSRIIVTTRD----------KRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL 82 (323)
Q Consensus 13 ~gs~IlvTTR~----------~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 82 (323)
.|+.+||||.+ +++..++. ....++++++++++.++++++.+....-.-+ +++..-|++.+.|-.-
T Consensus 123 ~~~~illits~~~p~~l~~~~~~L~sRl~--~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d~r 198 (229)
T PRK06893 123 QGKTLLLISADCSPHALSIKLPDLASRLT--WGEIYQLNDLTDEQKIIVLQRNAYQRGIELS--DEVANFLLKRLDRDMH 198 (229)
T ss_pred cCCcEEEEeCCCChHHccccchhHHHHHh--cCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHH
Confidence 35666554443 46666665 5678999999999999999999865432111 3556778888887665
Q ss_pred hHHHHhh
Q 036903 83 ALRVLGS 89 (323)
Q Consensus 83 Ai~~ig~ 89 (323)
++..+=.
T Consensus 199 ~l~~~l~ 205 (229)
T PRK06893 199 TLFDALD 205 (229)
T ss_pred HHHHHHH
Confidence 5544433
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.85 E-value=0.1 Score=46.06 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=41.6
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC--CCCCCCC-CCCceEEEcCCCcccc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR--TLPTNLI-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~--~LP~~i~-L~~L~~L~l~~~~i~~ 316 (323)
...+.+|+.|++|.++.|.+.. .+..+| -.+. +||.|-|.|+.+. .+-.+.. |+.++.|.++.|+++.
T Consensus 90 ~~ile~lP~l~~LNls~N~L~s-----~I~~lp---~p~~-nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq 160 (418)
T KOG2982|consen 90 GAILEQLPALTTLNLSCNSLSS-----DIKSLP---LPLK-NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ 160 (418)
T ss_pred HHHHhcCccceEeeccCCcCCC-----ccccCc---cccc-ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh
Confidence 3456788888888887776521 112233 2344 7888888777443 3334445 7777777777776554
Q ss_pred c
Q 036903 317 L 317 (323)
Q Consensus 317 l 317 (323)
+
T Consensus 161 ~ 161 (418)
T KOG2982|consen 161 L 161 (418)
T ss_pred h
Confidence 3
No 69
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.25 E-value=0.049 Score=48.93 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=59.2
Q ss_pred eeEEEEeecCCcc--ccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC----
Q 036903 222 VIAGIFLDLSKIR--DIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL---- 295 (323)
Q Consensus 222 ~~~~l~~~~~~~~--~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L---- 295 (323)
.++.+.+..+.++ ........|..+++|+||||..|.+..+ ....+.+.+..++ +||.|++++|.++.=
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----gs~~LakaL~s~~-~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----GSVALAKALSSWP-HLRELNLGDCLLENEGAIA 260 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----HHHHHHHHhcccc-hheeecccccccccccHHH
Confidence 4444444444433 2334556788999999999999876311 0124566777888 999999999876532
Q ss_pred -CCCC-C-CCCceEEEcCCCccc
Q 036903 296 -PTNL-I-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 296 -P~~i-~-L~~L~~L~l~~~~i~ 315 (323)
-..+ . .++|++|++.+|.|+
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHHHHhccCCCCceeccCcchhH
Confidence 2223 2 678899999888765
No 70
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.18 E-value=0.059 Score=53.08 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=51.8
Q ss_pred cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcc
Q 036903 236 IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 236 l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i 314 (323)
+...+.++.=++.|+.|+|+.|.+ .+.. .+..++ +|+.|||+.|.+..+|.--. =.+|+.|++++|.+
T Consensus 176 L~~mD~SLqll~ale~LnLshNk~---------~~v~-~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNKF---------TKVD-NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhhh---------hhhH-HHHhcc-cccccccccchhccccccchhhhhheeeeecccHH
Confidence 344456666677888888888876 3433 677777 88888888888888887653 34488888888877
Q ss_pred ccc
Q 036903 315 ELL 317 (323)
Q Consensus 315 ~~l 317 (323)
++|
T Consensus 245 ~tL 247 (1096)
T KOG1859|consen 245 TTL 247 (1096)
T ss_pred Hhh
Confidence 765
No 71
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.15 E-value=0.18 Score=27.18 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=12.4
Q ss_pred CceEEEcCCCccccccc
Q 036903 303 KLVVLNLPCSNVELLWE 319 (323)
Q Consensus 303 ~L~~L~l~~~~i~~lP~ 319 (323)
+|+.|++++|++++||+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777776
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.02 E-value=0.39 Score=40.13 Aligned_cols=84 Identities=19% Similarity=0.195 Sum_probs=58.5
Q ss_pred ccceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC
Q 036903 219 GTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN 298 (323)
Q Consensus 219 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~ 298 (323)
..+.+.++.+..+ +-..+.+..-.-+++|.+|.|.+|++. ....+ ..+-.+| .|+||.+-+|.+++.+.-
T Consensus 62 ~l~rL~tLll~nN--rIt~I~p~L~~~~p~l~~L~LtnNsi~------~l~dl-~pLa~~p-~L~~Ltll~Npv~~k~~Y 131 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN--RITRIDPDLDTFLPNLKTLILTNNSIQ------ELGDL-DPLASCP-KLEYLTLLGNPVEHKKNY 131 (233)
T ss_pred CccccceEEecCC--cceeeccchhhhccccceEEecCcchh------hhhhc-chhccCC-ccceeeecCCchhcccCc
Confidence 4445566655544 345566666667788999999999872 11222 3455677 899999999988888774
Q ss_pred ----CC-CCCceEEEcCCC
Q 036903 299 ----LI-TDKLVVLNLPCS 312 (323)
Q Consensus 299 ----i~-L~~L~~L~l~~~ 312 (323)
+. +++|++||++.-
T Consensus 132 R~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeEEEEecCcceEeehhhh
Confidence 35 899999998764
No 73
>COG3899 Predicted ATPase [General function prediction only]
Probab=88.92 E-value=3.5 Score=42.67 Aligned_cols=154 Identities=16% Similarity=0.187 Sum_probs=106.1
Q ss_pred CcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhcCC-------ChHHHHHHHHHh
Q 036903 34 NTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRK-------SKLDWENALENL 106 (323)
Q Consensus 34 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~~~-------~~~~w~~~l~~l 106 (323)
....+.+.||+..+...+...........+ .+....|+++-.|.|+=+.-+-..+... +...|+-=..++
T Consensus 210 ~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i 286 (849)
T COG3899 210 NITTITLAPLSRADTNQLVAATLGCTKLLP---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL 286 (849)
T ss_pred ceeEEecCcCchhhHHHHHHHHhCCccccc---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc
Confidence 456899999999999999988874433333 3558899999999999998888777642 444555333333
Q ss_pred hcCC-cccHHHHHHHHhcCCChhhHhHhhhhcccCCCCCHHHHHHHHhhcch----HHHHhhhCCcceEcC--------C
Q 036903 107 KRSS-DFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNY----VLNVLVDKSLLRISR--------Y 173 (323)
Q Consensus 107 ~~~~-~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~~~~l~~~w~~~g~----~l~~L~~~~ll~~~~--------~ 173 (323)
.... .+++...+..-.+.||+..|..+-..|++...|+.+.|...+..... .+.+....+++.+.+ .
T Consensus 287 ~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~ 366 (849)
T COG3899 287 GILATTDAVVEFLAARLQKLPGTTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNV 366 (849)
T ss_pred CCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceecccccccccccc
Confidence 3221 23356678899999999999999999999999999888888765444 333333444444321 1
Q ss_pred CeE---EecHHHHHHHHHHH
Q 036903 174 NKL---QMHDLLQEMGREIV 190 (323)
Q Consensus 174 ~~~---~mh~lv~~~~~~~~ 190 (323)
... -.|+.+++.+-...
T Consensus 367 ~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 367 DIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred chhhHHhhHHHHHHHHhccC
Confidence 112 46777877775543
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.83 E-value=0.29 Score=42.34 Aligned_cols=62 Identities=23% Similarity=0.252 Sum_probs=43.1
Q ss_pred hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC--CCC-CCCCCCC-CCCceEEEcCCCcccc
Q 036903 244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY--PLR-TLPTNLI-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~--~i~-~LP~~i~-L~~L~~L~l~~~~i~~ 316 (323)
..+..|..|++.++.+ +.+ ..+-.|+ +|++|.++.| .+. .++.... +.+|++|++++|+|+-
T Consensus 40 d~~~~le~ls~~n~gl---------tt~-~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 40 DEFVELELLSVINVGL---------TTL-TNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred ccccchhhhhhhccce---------eec-ccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 3445556666666654 222 2344678 9999999988 443 6666665 8999999999998764
No 75
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.41 E-value=0.36 Score=42.81 Aligned_cols=62 Identities=26% Similarity=0.287 Sum_probs=31.4
Q ss_pred hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCC----CCCCCCCCCCCceEEEcCCCcc
Q 036903 244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPL----RTLPTNLITDKLVVLNLPCSNV 314 (323)
Q Consensus 244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i----~~LP~~i~L~~L~~L~l~~~~i 314 (323)
+....++-|||.+|.+. .=..+-..+++|| +|+.|+|+.|.+ .++| ..+.+|++|-|.++.+
T Consensus 68 ~~~~~v~elDL~~N~iS------dWseI~~ile~lP-~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLIS------DWSEIGAILEQLP-ALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGL 133 (418)
T ss_pred HHhhhhhhhhcccchhc------cHHHHHHHHhcCc-cceEeeccCCcCCCccccCc--ccccceEEEEEcCCCC
Confidence 34455666666666541 0011222345566 666666665532 3333 2355666666666543
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.36 E-value=0.013 Score=49.83 Aligned_cols=65 Identities=12% Similarity=-0.022 Sum_probs=52.4
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
..|+.+..|.-||++.+.+ ..+|+..+.+. .++.+++..|+.+.+|.+++ +++++.+++.+|.+.
T Consensus 59 ~n~s~~t~~~rl~~sknq~---------~~~~~d~~q~~-e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 59 KNFSILTRLVRLDLSKNQI---------KFLPKDAKQQR-ETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cchHHHHHHHHHhccHhhH---------hhChhhHHHHH-HHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence 4456666667777776665 67888998888 89999998889999999998 999999999888654
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.19 E-value=0.014 Score=49.61 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=62.1
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP 318 (323)
-..+..++..++||++.+.. ..+-..+..+. .|..|+++.+.+..+|.+++ +..+..+++.+|+.+.+|
T Consensus 35 v~ei~~~kr~tvld~~s~r~---------vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p 104 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRL---------VNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP 104 (326)
T ss_pred hhhhhccceeeeehhhhhHH---------HhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC
Confidence 34457788999999999876 56667777788 88899999999999999998 999999999999999999
Q ss_pred ccc
Q 036903 319 EEK 321 (323)
Q Consensus 319 ~~i 321 (323)
.+-
T Consensus 105 ~s~ 107 (326)
T KOG0473|consen 105 KSQ 107 (326)
T ss_pred ccc
Confidence 864
No 78
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=87.57 E-value=0.32 Score=43.81 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=64.1
Q ss_pred cccceeEEEEeecCCcc--ccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC
Q 036903 218 KGTDVIAGIFLDLSKIR--DIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL 295 (323)
Q Consensus 218 ~~~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L 295 (323)
....+++.+.+..+... .-......|...+.|+.+.++.|.+..... +-+-..+...+ +|+.|||+.|.++.-
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~----~al~eal~~~~-~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV----TALAEALEHCP-HLEVLDLRDNTFTLE 228 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh----HHHHHHHHhCC-cceeeecccchhhhH
Confidence 34557777766655432 122334567888999999999998731110 23445677888 999999999977533
Q ss_pred -----CCCCC-CCCceEEEcCCCccc
Q 036903 296 -----PTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 296 -----P~~i~-L~~L~~L~l~~~~i~ 315 (323)
-..++ +++|+.|++.+|.++
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhcccchheeecccccccc
Confidence 34456 789999999999875
No 79
>PF05729 NACHT: NACHT domain
Probab=86.33 E-value=1.6 Score=34.62 Aligned_cols=43 Identities=14% Similarity=0.359 Sum_probs=34.4
Q ss_pred CCCceEEEEcCChhhH---hhcCCCCcceEEcCCCCHHhHHHHHHHhh
Q 036903 12 GPGSRIIVTTRDKRVL---DNFGVPNTNIYKVRGLNYSEALELFCNFA 56 (323)
Q Consensus 12 ~~gs~IlvTTR~~~v~---~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 56 (323)
.++++++||+|..... .... ....+.+++|++++..+++.++.
T Consensus 118 ~~~~~liit~r~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 118 PPGVKLIITSRPRAFPDLRRRLK--QAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred CCCCeEEEEEcCChHHHHHHhcC--CCcEEEECCCCHHHHHHHHHHHh
Confidence 5689999999998773 2333 44689999999999999998764
No 80
>PRK09087 hypothetical protein; Validated
Probab=84.62 E-value=14 Score=31.65 Aligned_cols=71 Identities=7% Similarity=0.075 Sum_probs=50.2
Q ss_pred CCceEEEEcCC---------hhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchh
Q 036903 13 PGSRIIVTTRD---------KRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLA 83 (323)
Q Consensus 13 ~gs~IlvTTR~---------~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLA 83 (323)
.|..||+|++. ++...++. ....+++++++.++-.+++.+.+-...-.- -+++..-|++.+.|..-+
T Consensus 116 ~g~~ilits~~~p~~~~~~~~dL~SRl~--~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l--~~ev~~~La~~~~r~~~~ 191 (226)
T PRK09087 116 AGTSLLMTSRLWPSSWNVKLPDLKSRLK--AATVVEIGEPDDALLSQVIFKLFADRQLYV--DPHVVYYLVSRMERSLFA 191 (226)
T ss_pred CCCeEEEECCCChHHhccccccHHHHHh--CCceeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhhhhHHH
Confidence 46789999873 44455555 667999999999999999999884422111 135677788888887766
Q ss_pred HHHH
Q 036903 84 LRVL 87 (323)
Q Consensus 84 i~~i 87 (323)
+..+
T Consensus 192 l~~~ 195 (226)
T PRK09087 192 AQTI 195 (226)
T ss_pred HHHH
Confidence 6643
No 81
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=84.42 E-value=5.2 Score=33.64 Aligned_cols=51 Identities=18% Similarity=0.055 Sum_probs=30.8
Q ss_pred cceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHH
Q 036903 35 TNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRV 86 (323)
Q Consensus 35 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ 86 (323)
...+.+++|+.+++++++....-..... +.-.+..++|...+||.|..|..
T Consensus 183 ~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 183 FSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp --EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred cceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3459999999999999999976333111 11235568899999999987754
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.80 E-value=0.83 Score=24.65 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=12.0
Q ss_pred CCCceEEEcCCCccccc
Q 036903 301 TDKLVVLNLPCSNVELL 317 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~l 317 (323)
|.+|+.|++.+|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 46777888888776554
No 83
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=83.13 E-value=7.9 Score=33.75 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=43.5
Q ss_pred cceEEcCCCCHHhHHHHHHHhhhcCC-CCC-CChHHHHHHHHHHhcCCchhHHHHhhhh
Q 036903 35 TNIYKVRGLNYSEALELFCNFAFKQS-NCP-DGLFTLSKHIVGYCKGNPLALRVLGSFL 91 (323)
Q Consensus 35 ~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~-~~~~~~~~~i~~~c~GlPLAi~~ig~~L 91 (323)
...+.+++++.+|..+++...+.... ... .--.+..+.|++.++|.|..|..++..+
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 34678999999999999988764322 111 1224678889999999999999988876
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.36 E-value=0.88 Score=23.70 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=9.3
Q ss_pred CCCceEEEcCCCccc
Q 036903 301 TDKLVVLNLPCSNVE 315 (323)
Q Consensus 301 L~~L~~L~l~~~~i~ 315 (323)
+++|++|+|++|.|.
T Consensus 1 ~~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 1 NPNLETLDLSNNQIT 15 (24)
T ss_dssp -TT-SEEE-TSSBEH
T ss_pred CCCCCEEEccCCcCC
Confidence 367888888888764
No 85
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=80.33 E-value=43 Score=31.07 Aligned_cols=148 Identities=14% Similarity=0.029 Sum_probs=82.3
Q ss_pred EEEEcCChhhHhhcC-----CCCcceEEcCCCCHHhHHHHHHHhhhcC---CC-CCCChHHHHHHHHHHhcCCchhHHHH
Q 036903 17 IIVTTRDKRVLDNFG-----VPNTNIYKVRGLNYSEALELFCNFAFKQ---SN-CPDGLFTLSKHIVGYCKGNPLALRVL 87 (323)
Q Consensus 17 IlvTTR~~~v~~~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~---~~-~~~~~~~~~~~i~~~c~GlPLAi~~i 87 (323)
+|.++....+..... .-....+.++|.+.++..+++...+-.. .. .++.++.+++......|..+.|+..+
T Consensus 176 vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll 255 (394)
T PRK00411 176 VIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLL 255 (394)
T ss_pred EEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666554433221 0012467999999999999999876322 11 22223333343333356677777776
Q ss_pred hhhhc-----CC---ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhcccC----CCCCHHHHHHH----
Q 036903 88 GSFLH-----RK---SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFF----AGEDKNLVTKI---- 151 (323)
Q Consensus 88 g~~L~-----~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp----~~~~~~~l~~~---- 151 (323)
-.+.. +. +.+.+..+.+... .....-.+..||.+.|..+..++... ..+....+...
T Consensus 256 ~~a~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l 328 (394)
T PRK00411 256 RRAGLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKEL 328 (394)
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 54321 11 4555555555441 23345568899999887765554332 22344443322
Q ss_pred ---Hhhc--ch-----HHHHhhhCCcceEc
Q 036903 152 ---LDDS--NY-----VLNVLVDKSLLRIS 171 (323)
Q Consensus 152 ---w~~~--g~-----~l~~L~~~~ll~~~ 171 (323)
.... +. ++++|.+.|+++..
T Consensus 329 ~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 329 CEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 1110 11 89999999999854
No 86
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=73.82 E-value=33 Score=31.78 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=46.1
Q ss_pred CCCceEEEEcCCh-hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHh
Q 036903 12 GPGSRIIVTTRDK-RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLG 88 (323)
Q Consensus 12 ~~gs~IlvTTR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig 88 (323)
..++.+|++|.+. .+...+. +....+.+.+++.++..+.+...... .. ......++..++|.|..+..+.
T Consensus 169 p~~~~~IL~t~~~~~llpti~-SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIR-SRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCeEEEEEECCchhchHHhh-ccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 3456677777665 3433332 24568999999999999999876411 11 1112678999999998665543
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=71.29 E-value=30 Score=29.12 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=45.6
Q ss_pred CceEEEEcCChh---------hHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhH
Q 036903 14 GSRIIVTTRDKR---------VLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLAL 84 (323)
Q Consensus 14 gs~IlvTTR~~~---------v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi 84 (323)
+.++|+||+... +...+. ....+++.++++++...++...+-..... --++....+++.++|.|..+
T Consensus 123 ~~~iIits~~~~~~~~~~~~~L~~r~~--~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L 198 (226)
T TIGR03420 123 GGRLLIAGRAAPAQLPLRLPDLRTRLA--WGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSL 198 (226)
T ss_pred CCeEEEECCCChHHCCcccHHHHHHHh--cCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHH
Confidence 457889887532 222222 24679999999999999988765322111 11344566777788888766
Q ss_pred HHHhh
Q 036903 85 RVLGS 89 (323)
Q Consensus 85 ~~ig~ 89 (323)
..+-.
T Consensus 199 ~~~l~ 203 (226)
T TIGR03420 199 MALLD 203 (226)
T ss_pred HHHHH
Confidence 65543
No 88
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=69.97 E-value=1.8 Score=38.49 Aligned_cols=60 Identities=20% Similarity=0.053 Sum_probs=42.0
Q ss_pred hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC---C-CCCceEEEcCCC
Q 036903 244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL---I-TDKLVVLNLPCS 312 (323)
Q Consensus 244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i---~-L~~L~~L~l~~~ 312 (323)
.++++|--|||++|-.. ...+-..+.+++ .|+||.++.|. .-.|+.+ + .+.|.+||+.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l-------~~~~~~~~~kf~-~L~~lSlsRCY-~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVML-------KNDCFQEFFKFN-YLQHLSLSRCY-DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeecccccccc-------CchHHHHHHhcc-hheeeehhhhc-CCChHHeeeeccCcceEEEEeccc
Confidence 57888999999887652 223444577787 89999998872 2334433 4 678899988776
No 89
>PRK08727 hypothetical protein; Validated
Probab=69.33 E-value=33 Score=29.44 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=45.1
Q ss_pred CCceEEEEcCCh---------hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchh
Q 036903 13 PGSRIIVTTRDK---------RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLA 83 (323)
Q Consensus 13 ~gs~IlvTTR~~---------~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLA 83 (323)
+|..||+||+.. ++...+. ....+.+++++.++-.+++.+.+....-.- -+++..-|++.++|-.-+
T Consensus 125 ~~~~vI~ts~~~p~~l~~~~~dL~SRl~--~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l--~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 125 AGITLLYTARQMPDGLALVLPDLRSRLA--QCIRIGLPVLDDVARAAVLRERAQRRGLAL--DEAAIDWLLTHGERELAG 200 (233)
T ss_pred cCCeEEEECCCChhhhhhhhHHHHHHHh--cCceEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHHH
Confidence 466799999853 2233333 346899999999999999998775432111 135567788888765544
Q ss_pred H
Q 036903 84 L 84 (323)
Q Consensus 84 i 84 (323)
+
T Consensus 201 ~ 201 (233)
T PRK08727 201 L 201 (233)
T ss_pred H
Confidence 4
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=65.71 E-value=16 Score=27.43 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=10.8
Q ss_pred CceeEEecCCCCCCCCCCC-C-CCCceEEEcCC
Q 036903 281 ELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPC 311 (323)
Q Consensus 281 ~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~ 311 (323)
+|..+.+..+ +..++... . . +|+.+.+.+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 5555555432 44444432 2 3 555555443
No 91
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=65.51 E-value=20 Score=26.90 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=46.8
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTNL- 299 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~i- 299 (323)
.++.+.+. +. ...+....|..+..|+.+.+.++ + ..++. .+...+ .|+++.+.+ .+..++...
T Consensus 13 ~l~~i~~~-~~--~~~I~~~~F~~~~~l~~i~~~~~-~---------~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 13 NLESITFP-NT--IKKIGENAFSNCTSLKSINFPNN-L---------TSIGDNAFSNCK-SLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp T--EEEET-ST----EE-TTTTTT-TT-SEEEESST-T---------SCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTT
T ss_pred CCCEEEEC-CC--eeEeChhhccccccccccccccc-c---------cccceeeeeccc-ccccccccc-cccccccccc
Confidence 45554433 12 34577788999999999999764 3 33333 456666 899999976 677777664
Q ss_pred C-CCCceEEEcCCCccccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP~ 319 (323)
. ..+|+.+++..+ +..++.
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~ 97 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGS 97 (129)
T ss_dssp TT-TTECEEEETTT--BEEHT
T ss_pred cccccccccccCcc-ccEEch
Confidence 5 899999999764 666654
No 92
>PRK08084 DNA replication initiation factor; Provisional
Probab=65.41 E-value=51 Score=28.29 Aligned_cols=70 Identities=14% Similarity=0.073 Sum_probs=46.7
Q ss_pred ceEEEEcCCh---------hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHH
Q 036903 15 SRIIVTTRDK---------RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALR 85 (323)
Q Consensus 15 s~IlvTTR~~---------~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~ 85 (323)
.++|+||+.. +...++. ...+++++++++++-.+++.+.+....-. --+++..-|++.+.|-.-++.
T Consensus 132 ~~li~ts~~~p~~l~~~~~~L~SRl~--~g~~~~l~~~~~~~~~~~l~~~a~~~~~~--l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 132 TRLLITGDRPPRQLNLGLPDLASRLD--WGQIYKLQPLSDEEKLQALQLRARLRGFE--LPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred CeEEEeCCCChHHcCcccHHHHHHHh--CCceeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhhcCCHHHHH
Confidence 4799999755 3344454 56789999999999999998866432211 123567778888877655544
Q ss_pred HHh
Q 036903 86 VLG 88 (323)
Q Consensus 86 ~ig 88 (323)
.+-
T Consensus 208 ~~l 210 (235)
T PRK08084 208 MTL 210 (235)
T ss_pred HHH
Confidence 433
No 93
>PF14516 AAA_35: AAA-like domain
Probab=65.18 E-value=1e+02 Score=28.01 Aligned_cols=55 Identities=11% Similarity=0.173 Sum_probs=43.9
Q ss_pred CcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhcCC
Q 036903 34 NTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRK 94 (323)
Q Consensus 34 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~~~ 94 (323)
....++|++++.+|...|...+-.. .. +...++|....||.|.-+..++..+...
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3458999999999999999887422 11 2238889999999999999999999764
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=62.35 E-value=16 Score=29.94 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=46.6
Q ss_pred hhcCCCCCCCCceEEEEcCCh-hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903 4 LTGGLDRFGPGSRIIVTTRDK-RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL 82 (323)
Q Consensus 4 l~~~~~~~~~gs~IlvTTR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 82 (323)
|+..+....+.+.+|++|++. .+...+. +....+.+.+++.++..+.+... + .+ ++.+..|++.++|.|.
T Consensus 116 Ll~~le~~~~~~~~il~~~~~~~l~~~i~-sr~~~~~~~~~~~~~~~~~l~~~--g---i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 116 LLKTLEEPPPNTLFILITPSPEKLLPTIR-SRCQVLPFPPLSEEALLQWLIRQ--G---IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHhcCCCCCeEEEEEECChHhChHHHH-hhcEEeeCCCCCHHHHHHHHHHc--C---CC---HHHHHHHHHHcCCCcc
Confidence 333444445566677766654 3333322 13468999999999998888776 1 11 3557889999999885
Q ss_pred h
Q 036903 83 A 83 (323)
Q Consensus 83 A 83 (323)
.
T Consensus 187 ~ 187 (188)
T TIGR00678 187 A 187 (188)
T ss_pred c
Confidence 3
No 95
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.06 E-value=0.55 Score=41.30 Aligned_cols=61 Identities=20% Similarity=0.090 Sum_probs=47.2
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC--C-CCCceEEEcCCC
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL--I-TDKLVVLNLPCS 312 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i--~-L~~L~~L~l~~~ 312 (323)
....+|+.|.||.|+=|.+ ..| +.+.... .|+.|.|+.|.|.+|-+-. . |++|++|=|..|
T Consensus 35 sic~kMp~lEVLsLSvNkI---------ssL-~pl~rCt-rLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKI---------SSL-APLQRCT-RLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHHHhcccceeEEeecccc---------ccc-hhHHHHH-HHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 3467899999999998887 333 3466667 8999999999888886654 4 888888877665
No 96
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.75 E-value=0.67 Score=40.77 Aligned_cols=78 Identities=23% Similarity=0.221 Sum_probs=53.4
Q ss_pred ccceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCC-CCCCCC
Q 036903 219 GTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYP-LRTLPT 297 (323)
Q Consensus 219 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~-i~~LP~ 297 (323)
...-++.+.+.++++.++ ..|..+++|+-|.|..|.+. ...++ .-+.+|| +||.|.|..|. ...-+.
T Consensus 39 kMp~lEVLsLSvNkIssL----~pl~rCtrLkElYLRkN~I~------sldEL-~YLknlp-sLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL----APLQRCTRLKELYLRKNCIE------SLDEL-EYLKNLP-SLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred hcccceeEEeeccccccc----hhHHHHHHHHHHHHHhcccc------cHHHH-HHHhcCc-hhhhHhhccCCcccccch
Confidence 344567777777776554 45788899999999888772 11111 2467788 99999998874 334454
Q ss_pred C-----CC-CCCceEEE
Q 036903 298 N-----LI-TDKLVVLN 308 (323)
Q Consensus 298 ~-----i~-L~~L~~L~ 308 (323)
. +. |+||+.||
T Consensus 107 nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 107 NYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHHHHHHHHcccchhcc
Confidence 3 34 88888886
No 97
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.41 E-value=6.5 Score=21.35 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=7.5
Q ss_pred CCceEEEcCCCcc
Q 036903 302 DKLVVLNLPCSNV 314 (323)
Q Consensus 302 ~~L~~L~l~~~~i 314 (323)
++|++|||++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3566666666654
No 98
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=57.96 E-value=36 Score=31.35 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=45.4
Q ss_pred Cce-EEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHh
Q 036903 14 GSR-IIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLG 88 (323)
Q Consensus 14 gs~-IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig 88 (323)
++. |++|++...+....- +....+.+.+++.++..+.+...... .. --.+....+++.++|.|..+..+.
T Consensus 171 ~~~fiLit~~~~~llptIr-SRc~~i~l~pl~~~~~~~~L~~~~~~-~~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 171 RALFILISHSSGRLLPTIR-SRCQPISLKPLDDDELKKALSHLGSS-QG---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CceEEEEECChhhccHHHH-hhccEEEecCCCHHHHHHHHHHhhcc-cC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444 555555444544443 23468999999999999999884311 11 113456789999999998766443
No 99
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.98 E-value=3.4 Score=34.67 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=29.9
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCCCCC-CCC-CCCceEEEcCC
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRTLPT-NLI-TDKLVVLNLPC 311 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~LP~-~i~-L~~L~~L~l~~ 311 (323)
+-+..++.++.|.+.+|... ..--| +.++.+.-+|+.|++++| +|++--- .+. +++|+.|.+.+
T Consensus 119 e~L~~l~~i~~l~l~~ck~~------dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYF------DDWCL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhccchhhhheeccccch------hhHHH-HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34455566666666665431 00001 112222227777777777 5543211 123 55666555543
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=52.41 E-value=96 Score=26.56 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=46.5
Q ss_pred CCceEEEEcCChhh---------HhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchh
Q 036903 13 PGSRIIVTTRDKRV---------LDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLA 83 (323)
Q Consensus 13 ~gs~IlvTTR~~~v---------~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLA 83 (323)
+|.+||+||+...- ..+++ ...++++++++.++-.+.++.++....-.-+ +++..-|++++.|-.-+
T Consensus 129 ~g~~ilits~~~p~~l~~~~~~L~SRl~--~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~--~ev~~~L~~~~~~d~r~ 204 (234)
T PRK05642 129 SGRRLLLAASKSPRELPIKLPDLKSRLT--LALVFQMRGLSDEDKLRALQLRASRRGLHLT--DEVGHFILTRGTRSMSA 204 (234)
T ss_pred cCCEEEEeCCCCHHHcCccCccHHHHHh--cCeeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHH
Confidence 46789998875422 22222 3467899999999999999976643321111 35667788887776555
Q ss_pred HHHHhh
Q 036903 84 LRVLGS 89 (323)
Q Consensus 84 i~~ig~ 89 (323)
+..+-.
T Consensus 205 l~~~l~ 210 (234)
T PRK05642 205 LFDLLE 210 (234)
T ss_pred HHHHHH
Confidence 444433
No 101
>PRK06620 hypothetical protein; Validated
Probab=51.79 E-value=1.1e+02 Score=25.73 Aligned_cols=65 Identities=8% Similarity=-0.042 Sum_probs=42.4
Q ss_pred CCceEEEEcCChh-------hHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCC-CCCCChHHHHHHHHHHhcCCch
Q 036903 13 PGSRIIVTTRDKR-------VLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS-NCPDGLFTLSKHIVGYCKGNPL 82 (323)
Q Consensus 13 ~gs~IlvTTR~~~-------v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~c~GlPL 82 (323)
.|..||+|++... ...++. ..-++.+++++.++-..++.+.+.... ..+ +++..-|++.+.|---
T Consensus 112 ~g~~ilits~~~p~~l~l~~L~SRl~--~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~---~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 112 KQKYLLLTSSDKSRNFTLPDLSSRIK--SVLSILLNSPDDELIKILIFKHFSISSVTIS---RQIIDFLLVNLPREYS 184 (214)
T ss_pred cCCEEEEEcCCCccccchHHHHHHHh--CCceEeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHH
Confidence 4678999997543 233443 456899999999998888888764321 112 3556667777766443
No 102
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=51.24 E-value=79 Score=28.23 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=56.5
Q ss_pred ceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhcC----------C-ChHHHHHHHH
Q 036903 36 NIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHR----------K-SKLDWENALE 104 (323)
Q Consensus 36 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~~----------~-~~~~w~~~l~ 104 (323)
-.+++..-+++|....++..+-..+-.-+ ++++.+|+++++|.---+..+-...+- . +.-+|+.+..
T Consensus 179 l~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~ 256 (351)
T KOG2035|consen 179 LFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQ 256 (351)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHH
Confidence 46789999999999999988744333222 678999999999864433333333321 1 4668998887
Q ss_pred Hhh-----cCCcccHHHHHHHHhcCC
Q 036903 105 NLK-----RSSDFEIYDVLKISYNEL 125 (323)
Q Consensus 105 ~l~-----~~~~~~i~~~l~~sy~~L 125 (323)
+.. +.....+..+-..=|+-|
T Consensus 257 e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 257 EIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 643 334445555555555533
No 103
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=50.88 E-value=11 Score=19.95 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=6.8
Q ss_pred CCceEEEcCCC
Q 036903 302 DKLVVLNLPCS 312 (323)
Q Consensus 302 ~~L~~L~l~~~ 312 (323)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45666666666
No 104
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=48.12 E-value=95 Score=29.68 Aligned_cols=77 Identities=12% Similarity=0.080 Sum_probs=51.6
Q ss_pred CCceEEEEcCCh---------hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchh
Q 036903 13 PGSRIIVTTRDK---------RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLA 83 (323)
Q Consensus 13 ~gs~IlvTTR~~---------~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLA 83 (323)
.|..||+|+... .+..++. ..-++.+++++.++-.+++.+.+-.......--+++..-|++.++|.|-.
T Consensus 238 ~~k~iIltsd~~P~~l~~l~~rL~SR~~--~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~ 315 (450)
T PRK14087 238 NDKQLFFSSDKSPELLNGFDNRLITRFN--MGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRK 315 (450)
T ss_pred cCCcEEEECCCCHHHHhhccHHHHHHHh--CCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHH
Confidence 455788886543 2233333 45688999999999999999987432211112246778899999999887
Q ss_pred HHHHhhhh
Q 036903 84 LRVLGSFL 91 (323)
Q Consensus 84 i~~ig~~L 91 (323)
+..+-..+
T Consensus 316 L~gaL~~l 323 (450)
T PRK14087 316 IKGSVSRL 323 (450)
T ss_pred HHHHHHHH
Confidence 76655433
No 105
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=47.55 E-value=58 Score=29.23 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=49.4
Q ss_pred hhcCCCCCCCCceEEEEcCChhh-HhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903 4 LTGGLDRFGPGSRIIVTTRDKRV-LDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL 82 (323)
Q Consensus 4 l~~~~~~~~~gs~IlvTTR~~~v-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 82 (323)
|+..+..-.+++.+|++|.+.+. .+++. +....+.+.++++++....+..... + .+ +..+..++..++|.|.
T Consensus 113 LLK~LEepp~~t~~il~~~~~~~ll~TI~-SRc~~~~~~~~~~~~~~~~l~~~~~-~--~~---~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 113 FLKTIEEPPKGVFIILLCENLEQILDTIK-SRCQIYKLNRLSKEEIEKFISYKYN-D--IK---EEEKKSAIAFSDGIPG 185 (313)
T ss_pred HHHHhcCCCCCeEEEEEeCChHhCcHHHH-hhceeeeCCCcCHHHHHHHHHHHhc-C--CC---HHHHHHHHHHcCCCHH
Confidence 44445556678888888876543 23222 2346899999999999887765531 1 11 2336678899999887
Q ss_pred hHHH
Q 036903 83 ALRV 86 (323)
Q Consensus 83 Ai~~ 86 (323)
-+..
T Consensus 186 ~a~~ 189 (313)
T PRK05564 186 KVEK 189 (313)
T ss_pred HHHH
Confidence 5543
No 106
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.88 E-value=1.3e+02 Score=29.34 Aligned_cols=74 Identities=11% Similarity=0.042 Sum_probs=46.7
Q ss_pred CCCCCCCceEEEEc-CChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhH
Q 036903 8 LDRFGPGSRIIVTT-RDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLAL 84 (323)
Q Consensus 8 ~~~~~~gs~IlvTT-R~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi 84 (323)
+.....++.+|++| +...+...+. +....+++.+++.++..+.+.+.+-...... -++....|++.++|.+--+
T Consensus 140 LEep~~~t~~Il~t~~~~kl~~~I~-SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 140 LEEPPEHVIFILATTEPEKMPPTIL-SRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHhCCCCEEEEEEcCChhhCChHHh-cceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 33444455555554 4444433332 1346899999999999999998874332211 1345778999999988544
No 107
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.21 E-value=1.4e+02 Score=27.45 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=47.2
Q ss_pred CCCCCCCCceEEEEcCCh-hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHH
Q 036903 7 GLDRFGPGSRIIVTTRDK-RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALR 85 (323)
Q Consensus 7 ~~~~~~~gs~IlvTTR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~ 85 (323)
.+.....+.++|++|.+. .+.+.+. +....+++++++.++..+.+...+-.....- -++.+..|++.++|.|-.+.
T Consensus 142 ~lEe~~~~~~fIl~t~~~~~l~~tI~-SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 142 TLEEPPQHIKFILATTDVEKIPKTIL-SRCLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHhcCCCCeEEEEEcCChHhhhHHHH-hhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 344444566666666443 3433332 1336899999999999988887664322111 12456779999999876443
Q ss_pred H
Q 036903 86 V 86 (323)
Q Consensus 86 ~ 86 (323)
.
T Consensus 219 ~ 219 (363)
T PRK14961 219 N 219 (363)
T ss_pred H
Confidence 3
No 108
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=40.15 E-value=1.9e+02 Score=25.84 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=45.6
Q ss_pred CCCCceEEEEcCCh-hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHH
Q 036903 11 FGPGSRIIVTTRDK-RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRV 86 (323)
Q Consensus 11 ~~~gs~IlvTTR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ 86 (323)
..+++++|+||... .+...+. +....+.+.+++.++....+...+-..... --.+....+++.++|-+-.+..
T Consensus 152 ~~~~~~~Il~~~~~~~~~~~L~-sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 152 YSRTCRFIIATRQPSKLIPPIR-SRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred ccCCCeEEEEeCChhhCchhhc-CCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 44567788777543 2222222 133578899999999999988876432211 1135577788899887655443
No 109
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.32 E-value=1.4e+02 Score=28.11 Aligned_cols=56 Identities=7% Similarity=0.020 Sum_probs=38.7
Q ss_pred cceEEcCCCCHHhHHHHHHHhhhcCCCCC-CChHHHHHHHHHHhcCCchhHHHHhhh
Q 036903 35 TNIYKVRGLNYSEALELFCNFAFKQSNCP-DGLFTLSKHIVGYCKGNPLALRVLGSF 90 (323)
Q Consensus 35 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~c~GlPLAi~~ig~~ 90 (323)
...+.+.+++.++.++++.+.+....... .--.+....|++.|+|-|..+..+-..
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 36899999999999999998763311111 122455778999999998776554433
No 110
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=39.25 E-value=85 Score=28.57 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=44.5
Q ss_pred CCceEEEEcCCh-hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHH
Q 036903 13 PGSRIIVTTRDK-RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVL 87 (323)
Q Consensus 13 ~gs~IlvTTR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~i 87 (323)
.++.+|+||.+. .+..++- +-...+.+.+++.+++.+.+.... +.. ..+-+..++..++|.|..+..+
T Consensus 135 ~~~~fiL~t~~~~~ll~TI~-SRc~~~~~~~~~~~~~~~~L~~~~-~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 135 GDTVLLLISHQPSRLLPTIK-SRCQQQACPLPSNEESLQWLQQAL-PES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCeEEEEEECChhhCcHHHH-hhceeeeCCCcCHHHHHHHHHHhc-ccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 466666666665 4444432 134579999999999998887653 111 1233567789999999765544
No 111
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=39.18 E-value=2.2e+02 Score=23.90 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=37.2
Q ss_pred cceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhh
Q 036903 35 TNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFL 91 (323)
Q Consensus 35 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L 91 (323)
...++++|+++++-..++...+-.....- -++....+++.+.|.+..+..+-..+
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v~l--~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQL--ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 46889999999987777766542211111 13557778888888888877666655
No 112
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=38.88 E-value=3e+02 Score=24.98 Aligned_cols=129 Identities=19% Similarity=0.111 Sum_probs=72.9
Q ss_pred ceEEcCCCCHHhHHHHHHHhhhc---CCCCCCChHHHHHHHHHHhcCCchhH-HHHhhhh----c-CC---ChHHHHHHH
Q 036903 36 NIYKVRGLNYSEALELFCNFAFK---QSNCPDGLFTLSKHIVGYCKGNPLAL-RVLGSFL----H-RK---SKLDWENAL 103 (323)
Q Consensus 36 ~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~~~~~~~~i~~~c~GlPLAi-~~ig~~L----~-~~---~~~~w~~~l 103 (323)
..+.++|.+.++..+++...+-. ....+++.-+.+..++....|.|-.+ ..+-.+. . +. +.+..+.+.
T Consensus 192 ~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~ 271 (365)
T TIGR02928 192 EEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQ 271 (365)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 56899999999999999988631 11223333344555677777887443 3322221 1 11 344444444
Q ss_pred HHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhcccC--C--CCCHHHHHHHHh--hc--ch----------HHHHhhhC
Q 036903 104 ENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFF--A--GEDKNLVTKILD--DS--NY----------VLNVLVDK 165 (323)
Q Consensus 104 ~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp--~--~~~~~~l~~~w~--~~--g~----------~l~~L~~~ 165 (323)
+.+. .....-+...||.+.+..+..+...- . .+...++...+. .+ |. +++.|...
T Consensus 272 ~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~ 344 (365)
T TIGR02928 272 EKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDML 344 (365)
T ss_pred HHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhc
Confidence 4331 23345577899998886665544221 1 144444444221 11 11 88899999
Q ss_pred CcceEc
Q 036903 166 SLLRIS 171 (323)
Q Consensus 166 ~ll~~~ 171 (323)
|++...
T Consensus 345 gli~~~ 350 (365)
T TIGR02928 345 GLVEAE 350 (365)
T ss_pred CCeEEE
Confidence 998864
No 113
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=38.63 E-value=1.5e+02 Score=26.93 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=43.0
Q ss_pred CCCceEEEEcC-ChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHH
Q 036903 12 GPGSRIIVTTR-DKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVL 87 (323)
Q Consensus 12 ~~gs~IlvTTR-~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~i 87 (323)
.+++..|.+|. ...+..++- +-...+.+.+++.+++.+.+.... . + .+..++..++|.|+.+...
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~-SRCq~~~~~~~~~~~~~~~L~~~~---~--~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIV-SRCQQWVVTPPSTAQAMQWLKGQG---I--T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CCCeEEEEEECChhhChHHHH-hcceeEeCCCCCHHHHHHHHHHcC---C--c-----hHHHHHHHcCCCHHHHHHH
Confidence 34555555554 455665553 244588999999999998886531 1 1 1356788999999977654
No 114
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=36.70 E-value=1e+02 Score=28.85 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=46.3
Q ss_pred CCCCCCCceEEEEcCC-hhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHH
Q 036903 8 LDRFGPGSRIIVTTRD-KRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRV 86 (323)
Q Consensus 8 ~~~~~~gs~IlvTTR~-~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ 86 (323)
+....++..+|++|.+ ..+..++- +-...+.+++++.++..+.+.... + .+ ++.+..+++.++|.|.....
T Consensus 141 LEep~~~~~fIL~a~~~~~llpTIr-SRc~~i~f~~~~~~~i~~~L~~~~-~---~~---~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 141 VEEPPPRTVWLLCAPSPEDVLPTIR-SRCRHVALRTPSVEAVAEVLVRRD-G---VD---PETARRAARASQGHIGRARR 212 (394)
T ss_pred hhcCCCCCeEEEEECChHHChHHHH-hhCeEEECCCCCHHHHHHHHHHhc-C---CC---HHHHHHHHHHcCCCHHHHHH
Confidence 3344456656665555 44444432 234689999999999998887543 1 11 34467899999999976544
Q ss_pred H
Q 036903 87 L 87 (323)
Q Consensus 87 i 87 (323)
.
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 4
No 115
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=34.14 E-value=1.8e+02 Score=26.34 Aligned_cols=78 Identities=10% Similarity=0.029 Sum_probs=48.5
Q ss_pred CCCCCCCceEEEEcCChh-hHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHH
Q 036903 8 LDRFGPGSRIIVTTRDKR-VLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRV 86 (323)
Q Consensus 8 ~~~~~~gs~IlvTTR~~~-v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ 86 (323)
+.....++.+|++|.+.. +...+. +....+++.++++++..+.+...+-.....-+ ++.+..+++.++|.|..+..
T Consensus 141 le~~~~~~~lIl~~~~~~~l~~~l~-sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 141 LEEPPEHVVFILATTEPHKIPATIL-SRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALS 217 (355)
T ss_pred HhCCccceeEEEEeCCHHHHHHHHH-hheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHH
Confidence 333445666666664443 333332 12357889999999999888887643221111 35677889999998876655
Q ss_pred Hh
Q 036903 87 LG 88 (323)
Q Consensus 87 ig 88 (323)
..
T Consensus 218 ~l 219 (355)
T TIGR02397 218 LL 219 (355)
T ss_pred HH
Confidence 44
No 116
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=34.01 E-value=1.6e+02 Score=28.62 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=46.9
Q ss_pred CCCCCCceEE-EEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhH
Q 036903 9 DRFGPGSRII-VTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLAL 84 (323)
Q Consensus 9 ~~~~~gs~Il-vTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi 84 (323)
....+.+.+| +||+...+...+. +....+++++++.++..+.+...+-...... -.+....|++.++|.+--+
T Consensus 153 Eepp~~~vfI~aTte~~kI~~tI~-SRc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 153 EEPPPHIIFIFATTEVQKIPATII-SRCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hhcCCCEEEEEEeCChHHhhHHHH-hcceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3334455544 5666666665543 1335789999999999999998874332211 1244677999999976444
No 117
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=33.55 E-value=2.3e+02 Score=23.93 Aligned_cols=66 Identities=6% Similarity=0.019 Sum_probs=37.7
Q ss_pred CCceEEEEcCCh---------hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903 13 PGSRIIVTTRDK---------RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL 82 (323)
Q Consensus 13 ~gs~IlvTTR~~---------~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 82 (323)
.|.+||+|++.. +...++. ..-.+++++.+.++-.+++.+.+-...-.- -++++.-|++.+.+-.-
T Consensus 129 ~~k~li~ts~~~P~~l~~~~~~L~SRl~--~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l--~~~v~~~l~~~~~~~~r 203 (219)
T PF00308_consen 129 SGKQLILTSDRPPSELSGLLPDLRSRLS--WGLVVELQPPDDEDRRRILQKKAKERGIEL--PEEVIEYLARRFRRDVR 203 (219)
T ss_dssp TTSEEEEEESS-TTTTTTS-HHHHHHHH--CSEEEEE----HHHHHHHHHHHHHHTT--S---HHHHHHHHHHTTSSHH
T ss_pred hCCeEEEEeCCCCccccccChhhhhhHh--hcchhhcCCCCHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHhhcCCHH
Confidence 567899999544 1223333 456899999999999999999885432211 13455556666554433
No 118
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=33.40 E-value=3.4e+02 Score=23.95 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=44.8
Q ss_pred CCCCCCceEEEEcCCh-hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHH
Q 036903 9 DRFGPGSRIIVTTRDK-RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALR 85 (323)
Q Consensus 9 ~~~~~gs~IlvTTR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~ 85 (323)
......+++|+++... .+.+... .....+++++++.++....+...+......- -++....+++.++|.+--+.
T Consensus 127 e~~~~~~~lIl~~~~~~~l~~~l~-sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 127 EMYSQNTRFILSCNYSSKIIDPIQ-SRCAVFRFSPLKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred hcCCCCCeEEEEeCCccccchhHH-HHhheeeeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 3444556777766432 2222111 0224689999999999998888774332211 13457778999998776543
No 119
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=32.99 E-value=1.4e+02 Score=26.90 Aligned_cols=47 Identities=19% Similarity=0.045 Sum_probs=33.5
Q ss_pred eEEcCCCCHHhHHHHHHHhhhcCCCCC-CChHHHHHHHHHHhcCCchh
Q 036903 37 IYKVRGLNYSEALELFCNFAFKQSNCP-DGLFTLSKHIVGYCKGNPLA 83 (323)
Q Consensus 37 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~c~GlPLA 83 (323)
++++++++.+|+..++..+.-.+-... ..-+...+++.-..+|.|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 789999999999999999874433222 22345566677777888853
No 120
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=31.17 E-value=74 Score=28.85 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=44.9
Q ss_pred CCCCCceEEEEcCC-hhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHh
Q 036903 10 RFGPGSRIIVTTRD-KRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLG 88 (323)
Q Consensus 10 ~~~~gs~IlvTTR~-~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig 88 (323)
.-..++.+|++|.+ ..+..++- +-...+.+.+++.+++.+.+.... .+ +.-+..++..++|.|+.+....
T Consensus 139 EPp~~~~fiL~~~~~~~lLpTIr-SRCq~i~~~~~~~~~~~~~L~~~~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 139 EPSPGRYLWLISAQPARLPATIR-SRCQRLEFKLPPAHEALAWLLAQG-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CCCCCCeEEEEECChhhCchHHH-hhheEeeCCCcCHHHHHHHHHHcC-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 33456666666654 45555442 234578999999999988886531 11 1225678999999998765443
No 121
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=28.93 E-value=30 Score=30.75 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=8.5
Q ss_pred CCCCceEEEEeCCCC
Q 036903 245 NMTNLRLLKFYLPNR 259 (323)
Q Consensus 245 ~~~~LrvL~L~~~~~ 259 (323)
.+++|.||||..|.+
T Consensus 212 y~~~LevLDlqDNtf 226 (388)
T COG5238 212 YSHSLEVLDLQDNTF 226 (388)
T ss_pred HhCcceeeeccccch
Confidence 345566666665554
No 122
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.33 E-value=1.1e+02 Score=30.84 Aligned_cols=80 Identities=8% Similarity=0.021 Sum_probs=49.7
Q ss_pred hcCCCCCCCCce-EEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchh
Q 036903 5 TGGLDRFGPGSR-IIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLA 83 (323)
Q Consensus 5 ~~~~~~~~~gs~-IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLA 83 (323)
+..+..-..+++ |++||....+...+- +-...+.+++++.++..+.+.+.+...... . -.+..+.|++.++|.|..
T Consensus 145 LKTLEEPP~~v~FILaTtep~kLlpTIr-SRCq~f~f~~ls~eei~~~L~~Il~~Egi~-~-d~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 145 LKTLEEPPEHVKFILATTDPQKIPVTVL-SRCLQFNLKQMPPGHIVSHLDAILGEEGIA-H-EVNALRLLAQAAQGSMRD 221 (700)
T ss_pred HHhhccCCCCceEEEEeCChHhhhhHHH-HHHHhcccCCCChHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHcCCCHHH
Confidence 333444444555 556666566654442 133689999999999999988876432211 1 124457799999998865
Q ss_pred HHHH
Q 036903 84 LRVL 87 (323)
Q Consensus 84 i~~i 87 (323)
+..+
T Consensus 222 ALsL 225 (700)
T PRK12323 222 ALSL 225 (700)
T ss_pred HHHH
Confidence 5444
No 123
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=28.21 E-value=6.5e+02 Score=26.19 Aligned_cols=74 Identities=9% Similarity=0.048 Sum_probs=46.6
Q ss_pred CCCCCceEEEEcCCh-hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCc-hhHHH
Q 036903 10 RFGPGSRIIVTTRDK-RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNP-LALRV 86 (323)
Q Consensus 10 ~~~~gs~IlvTTR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-LAi~~ 86 (323)
....+.++|+||.+. .+...+- +-...+.+++++.++..+.+.+.+......- -.+....|++.++|.. -|+..
T Consensus 145 EPP~~v~FILaTtd~~KIp~TIr-SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 145 EPPPHVKFILATTDPQKIPVTVL-SRCLQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hcCCCeEEEEEECChhhccchhh-hheEEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 344566766666654 3333322 1346899999999999999988764322111 1355677999998855 44444
No 124
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=27.96 E-value=1.9e+02 Score=26.35 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=41.6
Q ss_pred CCCceEEEEcCC-hhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhH
Q 036903 12 GPGSRIIVTTRD-KRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLAL 84 (323)
Q Consensus 12 ~~gs~IlvTTR~-~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi 84 (323)
.+++.+|.+|.+ ..+..++- +-...+.+.+++.++..+.+.... +. . ...+...+..++|.|..+
T Consensus 135 p~~~~fiL~t~~~~~llpTI~-SRC~~~~~~~~~~~~~~~~L~~~~-~~---~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 135 RPNTYFLLQADLSAALLPTIY-SRCQTWLIHPPEEQQALDWLQAQS-SA---E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCeEEEEEECChHhCchHHH-hhceEEeCCCCCHHHHHHHHHHHh-cc---C---hHHHHHHHHHcCCCHHHH
Confidence 345556666554 45554442 134689999999999998888754 11 1 112556778899999644
No 125
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=27.65 E-value=2.1e+02 Score=21.36 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=32.6
Q ss_pred HHHHHhcCCchhHHHHhhhhcCC---ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhh
Q 036903 72 HIVGYCKGNPLALRVLGSFLHRK---SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLD 135 (323)
Q Consensus 72 ~i~~~c~GlPLAi~~ig~~L~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~ 135 (323)
.|+++..+-+.+..+--+...-- +.-++.++++- ..--+-.|+.||.+.|.||-.
T Consensus 3 ~Ivkk~n~t~v~~hl~~r~~~Ygd~s~~~DyqeAln~---------V~e~~eaFd~LPa~iRe~F~N 60 (114)
T PF09675_consen 3 KIVKKFNKTGVIAHLEQRQPEYGDCSSPFDYQEALNM---------VAEANEAFDELPAHIRERFNN 60 (114)
T ss_pred HHHHHHccchHHHHHHhcCCcccccCCHHhHHHHHHH---------HHHHHHHHHHchHHHHHHhCC
Confidence 56777777776555422222211 24455555443 233345799999999999954
No 126
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=27.32 E-value=1.7e+02 Score=29.26 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=42.8
Q ss_pred CCCCCCceEEE--EcCChhh-HhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHH
Q 036903 9 DRFGPGSRIIV--TTRDKRV-LDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALR 85 (323)
Q Consensus 9 ~~~~~gs~Ilv--TTR~~~v-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~ 85 (323)
..+.+...|++ ||++... ...+. +....+.+.+++.+|.++++.+.+-.....- -+++...|.+.+..-+-|+.
T Consensus 317 ~~~~~~~~VLI~aTt~~~~~l~~aLr-SR~~~i~~~pls~edi~~Il~~~a~~~~v~l--s~eal~~L~~ys~~gRraln 393 (615)
T TIGR02903 317 EEGAPADFVLIGATTRDPEEINPALR-SRCAEVFFEPLTPEDIALIVLNAAEKINVHL--AAGVEELIARYTIEGRKAVN 393 (615)
T ss_pred ccCccceEEEEEeccccccccCHHHH-hceeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHCCCcHHHHHH
Confidence 33444555666 6775532 11111 1224678999999999999999874321111 12344445554443455555
Q ss_pred HHhhh
Q 036903 86 VLGSF 90 (323)
Q Consensus 86 ~ig~~ 90 (323)
.++.+
T Consensus 394 ~L~~~ 398 (615)
T TIGR02903 394 ILADV 398 (615)
T ss_pred HHHHH
Confidence 55443
No 127
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.70 E-value=3.2e+02 Score=27.46 Aligned_cols=76 Identities=9% Similarity=0.049 Sum_probs=47.1
Q ss_pred CCceEEEEc-CChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCC-chhHHHHhhh
Q 036903 13 PGSRIIVTT-RDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGN-PLALRVLGSF 90 (323)
Q Consensus 13 ~gs~IlvTT-R~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLAi~~ig~~ 90 (323)
....+|++| ....+...+. +....+++++++.++..+.+...+......- -.+.+..|++.++|- --|+..+..+
T Consensus 148 ~~~ifILaTt~~~kll~TI~-SRcq~i~F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 148 ARVTFVLATTEPHKFPVTIV-SRCQHFTFTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred CCEEEEEecCChhhhhHHHH-hhhhccccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345555544 4455543332 1235789999999999988888664332111 134577788999985 4677766554
Q ss_pred h
Q 036903 91 L 91 (323)
Q Consensus 91 L 91 (323)
+
T Consensus 225 l 225 (624)
T PRK14959 225 L 225 (624)
T ss_pred H
Confidence 4
No 128
>PRK14700 recombination factor protein RarA; Provisional
Probab=26.68 E-value=2.5e+02 Score=25.19 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=45.0
Q ss_pred CCCCCceEEE--EcCChhhHhhcC-CCCcceEEcCCCCHHhHHHHHHHhhhcCC---C-CCCChHHHHHHHHHHhcCCc
Q 036903 10 RFGPGSRIIV--TTRDKRVLDNFG-VPNTNIYKVRGLNYSEALELFCNFAFKQS---N-CPDGLFTLSKHIVGYCKGNP 81 (323)
Q Consensus 10 ~~~~gs~Ilv--TTR~~~v~~~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~---~-~~~~~~~~~~~i~~~c~GlP 81 (323)
..-+|.-++| ||.|+.-.-.-. .+-.+++.+++|+.++..+++.+..-... . .-.--++....|++.|+|--
T Consensus 3 ~vE~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDa 81 (300)
T PRK14700 3 YVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDC 81 (300)
T ss_pred CccCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHH
Confidence 3445665555 777764321111 12557999999999999999999874211 1 11112456777999999853
No 129
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=25.91 E-value=5.7e+02 Score=26.69 Aligned_cols=77 Identities=10% Similarity=-0.003 Sum_probs=46.4
Q ss_pred hcCCCCCCCCceEE-EEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchh
Q 036903 5 TGGLDRFGPGSRII-VTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLA 83 (323)
Q Consensus 5 ~~~~~~~~~gs~Il-vTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLA 83 (323)
+..+..-...+.+| +||....+...+. +..+.|++++++.++..+.+.+.+-...... -......|++.++|-+..
T Consensus 141 LK~LEEpP~~~~fIl~tt~~~kLl~TIr-SRc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 141 LKIVEEPPEHLKFIFATTEPDKVIGTIR-SRTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred HHHHhCCCCCeEEEEEeCChhhhhHHHH-hheeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 33344444555555 4545555555442 2457899999999999888877653222111 124456788999997743
Q ss_pred H
Q 036903 84 L 84 (323)
Q Consensus 84 i 84 (323)
+
T Consensus 218 A 218 (824)
T PRK07764 218 S 218 (824)
T ss_pred H
Confidence 3
No 130
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.03 E-value=4.3e+02 Score=26.45 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=46.0
Q ss_pred CCCCCCceEE-EEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhH
Q 036903 9 DRFGPGSRII-VTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLAL 84 (323)
Q Consensus 9 ~~~~~gs~Il-vTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi 84 (323)
..-..++.+| +||+...+.+.+. +....+++++++.++....+...+-.....- -++.+..|++.++|-.--+
T Consensus 146 Eepp~~tifIL~tt~~~kIl~tI~-SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 146 EEPPSYAIFILATTEKHKILPTIL-SRCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred hCCCCCeEEEEEeCCchhchHHHH-hhhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3333455544 5556566655442 2446899999999999988887764322111 1245677999999966544
No 131
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=23.98 E-value=5.7e+02 Score=23.46 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=42.3
Q ss_pred CCCCCceEE-EEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHh
Q 036903 10 RFGPGSRII-VTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLG 88 (323)
Q Consensus 10 ~~~~gs~Il-vTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig 88 (323)
.-.+++.+| +|++-..+..++- +-...+.+.+++.++..+.+...- . + + ...++..++|.|..+....
T Consensus 158 EPp~~t~fiL~t~~~~~LLpTI~-SRcq~i~~~~~~~~~~~~~L~~~~---~--~-~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 158 EPPPGTVFLLVSARIDRLLPTIL-SRCRQFPMTVPAPEAAAAWLAAQG---V--A-D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred CCCcCcEEEEEECChhhCcHHHH-hcCEEEEecCCCHHHHHHHHHHcC---C--C-h----HHHHHHHcCCCHHHHHHHH
Confidence 334455444 5555566665543 134689999999999998887651 1 1 1 2235778899997555443
No 132
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=23.88 E-value=1.9e+02 Score=26.40 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=42.4
Q ss_pred CCCceEEEEcCC-hhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHH
Q 036903 12 GPGSRIIVTTRD-KRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRV 86 (323)
Q Consensus 12 ~~gs~IlvTTR~-~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ 86 (323)
..++..|.+|.+ ..+..++- +-...+.+.+++.+++.+.+.... + .+ ++-+..++..++|.|..+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTIr-SRCq~~~~~~~~~~~~~~~L~~~~-~---~~---~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 136 PENTWFFLACREPARLLATLR-SRCRLHYLAPPPEQYALTWLSREV-T---MS---QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred CCCeEEEEEECChhhChHHHH-hccccccCCCCCHHHHHHHHHHcc-C---CC---HHHHHHHHHHcCCCHHHHHH
Confidence 445555555554 55665543 133578999999999988876542 1 11 22366789999999965443
No 133
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=23.27 E-value=2.2e+02 Score=24.98 Aligned_cols=51 Identities=12% Similarity=-0.102 Sum_probs=37.3
Q ss_pred EEcCCCCHHhHHHHHHHhhhcCCCCCCCh-HHHHHHHHHHhcCCchhHHHHh
Q 036903 38 YKVRGLNYSEALELFCNFAFKQSNCPDGL-FTLSKHIVGYCKGNPLALRVLG 88 (323)
Q Consensus 38 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~-~~~~~~i~~~c~GlPLAi~~ig 88 (323)
|.+.|++.++....+.....+.....+-+ ......|..+..|.|.+|..++
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 89999999999888888875543222222 2345668888999999987765
No 134
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.86 E-value=6.7e+02 Score=24.16 Aligned_cols=80 Identities=13% Similarity=0.020 Sum_probs=47.2
Q ss_pred CCCCCCceEEE-EcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcC-CchhHHH
Q 036903 9 DRFGPGSRIIV-TTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKG-NPLALRV 86 (323)
Q Consensus 9 ~~~~~gs~Ilv-TTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLAi~~ 86 (323)
........+|+ ||....+...+. +....+.+.+++.++....+...+......- -++....|++.++| ++.|+..
T Consensus 142 E~p~~~vv~Ilattn~~kl~~~L~-SR~~vv~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~GdlR~aln~ 218 (472)
T PRK14962 142 EEPPSHVVFVLATTNLEKVPPTII-SRCQVIEFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGGLRDALTM 218 (472)
T ss_pred HhCCCcEEEEEEeCChHhhhHHHh-cCcEEEEECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHH
Confidence 33333444444 443344444432 2346899999999999988888774322111 13456778887765 5667666
Q ss_pred Hhhhh
Q 036903 87 LGSFL 91 (323)
Q Consensus 87 ig~~L 91 (323)
+..+.
T Consensus 219 Le~l~ 223 (472)
T PRK14962 219 LEQVW 223 (472)
T ss_pred HHHHH
Confidence 65533
No 135
>PLN03025 replication factor C subunit; Provisional
Probab=22.74 E-value=2.9e+02 Score=24.75 Aligned_cols=72 Identities=10% Similarity=0.062 Sum_probs=44.1
Q ss_pred CCCCCceEEEEcCCh-hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhH
Q 036903 10 RFGPGSRIIVTTRDK-RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLAL 84 (323)
Q Consensus 10 ~~~~gs~IlvTTR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi 84 (323)
..+..++++++|... .+.+... +....++++++++++..+.+...+-.....-+ ++....|++.++|-.-.+
T Consensus 125 ~~~~~t~~il~~n~~~~i~~~L~-SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 125 IYSNTTRFALACNTSSKIIEPIQ-SRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCceEEEEeCCccccchhHH-HhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 345567777766432 2222211 12347899999999999998887743222111 345778899998866433
No 136
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=22.17 E-value=3.5e+02 Score=24.79 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=41.2
Q ss_pred CCceEEEEcCChhhHh-hcC--CCCcceEEcCCCCHHhHHHHHHHhhhcCCCCC-CChHHHHHHHHHHhcCCc
Q 036903 13 PGSRIIVTTRDKRVLD-NFG--VPNTNIYKVRGLNYSEALELFCNFAFKQSNCP-DGLFTLSKHIVGYCKGNP 81 (323)
Q Consensus 13 ~gs~IlvTTR~~~v~~-~~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~c~GlP 81 (323)
.+.+||.||....... .+- ...+..+.+++.+.++..++|..++.+..... -+ ...+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 3567888887553321 110 01356899999999999999998875433222 12 355677777654
No 137
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.44 E-value=2.8e+02 Score=26.96 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=46.0
Q ss_pred CCCCCCCceEE-EEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhH
Q 036903 8 LDRFGPGSRII-VTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLAL 84 (323)
Q Consensus 8 ~~~~~~gs~Il-vTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi 84 (323)
+..-.+.+++| +||....+...+. +....+.+++++.++..+.+.+.+......- -++....|++.++|-+-.+
T Consensus 140 LEePp~~v~fIlatte~~Kl~~tI~-SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 140 LEEPAPHVKFILATTEVKKIPVTII-SRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HhCCCCCeEEEEEeCChHHHHHHHH-HhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 33334455555 4555555555442 1346799999999999999988774332211 1244667899998877543
No 138
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=21.07 E-value=2.8e+02 Score=25.01 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=44.5
Q ss_pred CceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHH
Q 036903 14 GSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVL 87 (323)
Q Consensus 14 gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~i 87 (323)
+.-|++|+....+..++- +-...+.+.++++++..+.+........ .......++..++|.|..+...
T Consensus 154 ~~fILi~~~~~~Ll~TI~-SRcq~i~f~~l~~~~~~~~L~~~~~~~~-----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 154 GTLILIAPSPESLLPTIV-SRCQIIPFYRLSDEQLEQVLKRLGDEEI-----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CeEEEEECChHhCcHHHH-hhceEEecCCCCHHHHHHHHHHhhcccc-----chhHHHHHHHHcCCCHHHHHHH
Confidence 344556655556655553 2456899999999999999998642111 1111357888999999766543
No 139
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=20.89 E-value=2.7e+02 Score=28.09 Aligned_cols=69 Identities=9% Similarity=0.032 Sum_probs=43.6
Q ss_pred eEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHH
Q 036903 16 RIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVL 87 (323)
Q Consensus 16 ~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~i 87 (323)
-|++||....+...+- +-...|.+++++.++..+.+.+.+-.... .. -......|++.++|.+-.+..+
T Consensus 152 FIL~Tt~~~kLl~TI~-SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~-e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 152 FLLATTDPQKLPVTIL-SRCLQFHLKALDVEQIRQQLEHILQAEQI-PF-EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred EEEecCCccccchHHH-hhheEeeCCCCCHHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 3555555555544332 13468999999999999998887632221 11 1344567999999977644433
No 140
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.84 E-value=2.7e+02 Score=26.93 Aligned_cols=66 Identities=9% Similarity=-0.065 Sum_probs=42.9
Q ss_pred EEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHH
Q 036903 17 IIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALR 85 (323)
Q Consensus 17 IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~ 85 (323)
|+.||....+...+- +-...|.+.+++.++..+.+.+.+-..... --++....|++.++|.+--+.
T Consensus 155 ILaTte~~kI~~TI~-SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 155 ILATTEFHKIPETIL-SRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred EeecCChhhccHHHH-hhhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHHHHH
Confidence 445666566654443 133579999999999998888876432211 113556789999999875443
No 141
>PF13730 HTH_36: Helix-turn-helix domain
Probab=20.44 E-value=1.3e+02 Score=18.79 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=24.6
Q ss_pred CCChhhHhHhhhhcccCCC----C-CHHHHHHHHhhcch-----HHHHhhhCCcc
Q 036903 124 ELNPEEKSLFLDIACFFAG----E-DKNLVTKILDDSNY-----VLNVLVDKSLL 168 (323)
Q Consensus 124 ~L~~~~k~cfl~~s~fp~~----~-~~~~l~~~w~~~g~-----~l~~L~~~~ll 168 (323)
+|++..+..+.++.-+..+ + ..+.+...- +.+- ++++|++.|+|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~-g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDL-GVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCcCC
Confidence 5677777777776666432 1 122222222 1111 88888888875
Done!