Query 036903
Match_columns 323
No_of_seqs 239 out of 1668
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 10:39:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.3E-30 4.3E-35 251.6 9.4 178 13-195 264-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 1.6E-25 5.6E-30 234.3 16.2 178 11-193 254-452 (1249)
3 1vt4_I APAF-1 related killer D 99.9 3.2E-23 1.1E-27 206.4 10.3 157 12-186 263-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 3.7E-22 1.3E-26 194.2 15.9 173 11-190 254-449 (591)
5 2r9u_A Variable lymphocyte rec 98.8 2.8E-08 9.4E-13 80.8 9.0 87 222-320 34-123 (174)
6 3e6j_A Variable lymphocyte rec 98.7 3.9E-08 1.3E-12 83.5 8.4 86 222-319 65-152 (229)
7 3e6j_A Variable lymphocyte rec 98.7 6E-08 2.1E-12 82.4 9.0 89 221-321 40-131 (229)
8 2wfh_A SLIT homolog 2 protein 98.6 9.7E-08 3.3E-12 78.9 9.0 86 222-320 32-120 (193)
9 2v9t_B SLIT homolog 2 protein 98.6 8.3E-08 2.8E-12 81.0 8.6 73 238-320 71-146 (220)
10 4b8c_D Glucose-repressible alc 98.6 2.3E-08 7.8E-13 99.3 5.8 83 222-317 248-331 (727)
11 3g39_A Variable lymphocyte rec 98.6 1.2E-07 4E-12 76.7 9.0 85 222-318 31-118 (170)
12 2v9t_B SLIT homolog 2 protein 98.6 1.2E-07 4.1E-12 80.0 9.0 72 238-318 47-120 (220)
13 2o6r_A Variable lymphocyte rec 98.6 1.4E-07 4.9E-12 76.5 9.1 73 238-320 43-118 (177)
14 2ell_A Acidic leucine-rich nuc 98.6 4E-08 1.4E-12 79.1 5.2 47 273-320 114-165 (168)
15 1a9n_A U2A', U2A'; complex (nu 98.6 3.8E-08 1.3E-12 80.0 4.9 85 222-320 43-131 (176)
16 2r9u_A Variable lymphocyte rec 98.6 1.4E-07 4.8E-12 76.6 8.3 64 247-320 33-99 (174)
17 2ell_A Acidic leucine-rich nuc 98.6 3.8E-08 1.3E-12 79.2 4.8 87 220-319 48-137 (168)
18 2v70_A SLIT-2, SLIT homolog 2 98.6 1.3E-07 4.4E-12 79.8 8.2 70 238-317 72-144 (220)
19 2je0_A Acidic leucine-rich nuc 98.5 2.6E-08 8.7E-13 78.5 2.8 86 221-319 42-130 (149)
20 2o6s_A Variable lymphocyte rec 98.5 2.8E-07 9.5E-12 76.8 9.1 87 222-320 53-142 (208)
21 4b8c_D Glucose-repressible alc 98.5 5.3E-08 1.8E-12 96.7 5.0 88 221-321 224-312 (727)
22 1w8a_A SLIT protein; signaling 98.5 2.1E-07 7.2E-12 76.7 7.7 67 242-317 49-117 (192)
23 3m19_A Variable lymphocyte rec 98.5 3.3E-07 1.1E-11 78.7 9.1 72 238-319 98-172 (251)
24 2o6s_A Variable lymphocyte rec 98.5 3.7E-07 1.3E-11 76.0 9.1 87 222-320 29-118 (208)
25 1a9n_A U2A', U2A'; complex (nu 98.5 1.6E-07 5.6E-12 76.1 6.5 86 220-319 18-105 (176)
26 4fcg_A Uncharacterized protein 98.5 1.2E-07 4.2E-12 84.9 6.3 87 222-321 105-202 (328)
27 3g39_A Variable lymphocyte rec 98.5 3.3E-07 1.1E-11 74.0 8.3 64 247-320 30-96 (170)
28 3m19_A Variable lymphocyte rec 98.5 3.9E-07 1.3E-11 78.3 9.0 87 222-320 60-149 (251)
29 1dce_A Protein (RAB geranylger 98.5 1.4E-07 4.8E-12 90.9 6.7 64 243-317 459-523 (567)
30 2je0_A Acidic leucine-rich nuc 98.5 1.1E-07 3.9E-12 74.8 4.9 86 221-318 17-104 (149)
31 4g8a_A TOLL-like receptor 4; l 98.5 1.5E-07 5E-12 91.3 6.7 66 240-315 93-161 (635)
32 1p9a_G Platelet glycoprotein I 98.5 4.3E-07 1.5E-11 79.9 8.7 88 222-321 101-191 (290)
33 1dce_A Protein (RAB geranylger 98.5 2.6E-07 9E-12 89.0 7.6 71 240-321 479-552 (567)
34 4fcg_A Uncharacterized protein 98.4 2E-07 6.8E-12 83.6 6.0 88 221-321 81-170 (328)
35 1ogq_A PGIP-2, polygalacturona 98.4 1.9E-07 6.7E-12 83.0 5.6 73 240-321 94-169 (313)
36 1p9a_G Platelet glycoprotein I 98.4 5.6E-07 1.9E-11 79.2 8.3 68 244-321 74-143 (290)
37 2o6q_A Variable lymphocyte rec 98.4 7.8E-07 2.7E-11 77.2 9.0 73 238-320 124-199 (270)
38 1xku_A Decorin; proteoglycan, 98.4 6.9E-07 2.4E-11 79.8 8.8 73 238-320 207-281 (330)
39 2xot_A Amphoterin-induced prot 98.4 4.8E-07 1.6E-11 82.1 7.7 70 240-318 105-179 (361)
40 3o6n_A APL1; leucine-rich repe 98.4 5.9E-07 2E-11 82.2 7.7 72 238-319 84-158 (390)
41 3rfs_A Internalin B, repeat mo 98.4 1.1E-06 3.7E-11 76.5 8.9 73 238-320 124-199 (272)
42 3vq2_A TLR4, TOLL-like recepto 98.4 7.4E-07 2.5E-11 86.2 8.5 68 238-315 71-141 (606)
43 2o6q_A Variable lymphocyte rec 98.4 1.1E-06 3.8E-11 76.2 8.9 87 222-320 62-151 (270)
44 2v70_A SLIT-2, SLIT homolog 2 98.4 1.1E-06 3.7E-11 74.1 8.4 83 222-315 82-166 (220)
45 3vq2_A TLR4, TOLL-like recepto 98.4 7.8E-07 2.7E-11 86.1 8.5 87 221-319 32-121 (606)
46 1w8a_A SLIT protein; signaling 98.4 8.8E-07 3E-11 72.9 7.4 83 221-315 54-139 (192)
47 2wfh_A SLIT homolog 2 protein 98.3 1.4E-06 4.9E-11 71.8 8.6 82 221-314 54-138 (193)
48 2ifg_A High affinity nerve gro 98.3 5.3E-07 1.8E-11 81.2 6.3 82 222-315 32-116 (347)
49 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 8.2E-07 2.8E-11 85.4 7.8 86 221-318 52-137 (562)
50 2xot_A Amphoterin-induced prot 98.3 9.7E-07 3.3E-11 80.1 7.8 90 220-321 63-155 (361)
51 1ogq_A PGIP-2, polygalacturona 98.3 3.3E-07 1.1E-11 81.5 4.3 74 238-320 116-193 (313)
52 2o6r_A Variable lymphocyte rec 98.3 1.2E-06 4.1E-11 70.9 7.3 85 221-317 52-139 (177)
53 3zyi_A Leucine-rich repeat-con 98.3 1.3E-06 4.5E-11 81.6 8.6 73 238-319 90-164 (452)
54 2z7x_B TOLL-like receptor 1, v 98.3 6.2E-07 2.1E-11 85.2 6.4 67 240-316 38-104 (520)
55 3rfs_A Internalin B, repeat mo 98.3 2E-06 6.9E-11 74.7 9.1 68 238-315 148-218 (272)
56 3o6n_A APL1; leucine-rich repe 98.3 2.1E-06 7E-11 78.6 9.2 71 238-318 108-181 (390)
57 2z80_A TOLL-like receptor 2, v 98.3 8.3E-07 2.8E-11 80.1 6.4 68 240-317 93-165 (353)
58 2ft3_A Biglycan; proteoglycan, 98.3 1.4E-06 4.9E-11 77.8 7.9 63 241-315 96-160 (332)
59 3oja_B Anopheles plasmodium-re 98.3 1.2E-06 4.2E-11 84.8 8.1 72 238-319 90-164 (597)
60 2ft3_A Biglycan; proteoglycan, 98.3 7.2E-07 2.5E-11 79.8 5.7 71 239-319 209-281 (332)
61 1ozn_A Reticulon 4 receptor; N 98.3 2.3E-06 7.9E-11 74.7 8.8 87 222-320 57-147 (285)
62 1ozn_A Reticulon 4 receptor; N 98.3 2.5E-06 8.5E-11 74.5 8.9 90 221-320 80-171 (285)
63 4g8a_A TOLL-like receptor 4; l 98.3 1.4E-06 4.6E-11 84.4 7.8 72 238-319 67-141 (635)
64 2z62_A TOLL-like receptor 4, v 98.3 1.5E-06 5E-11 75.6 7.2 69 240-318 93-165 (276)
65 2z62_A TOLL-like receptor 4, v 98.2 2.7E-06 9.3E-11 73.9 8.4 88 222-320 53-144 (276)
66 3zyj_A Leucine-rich repeat-con 98.2 2E-06 6.7E-11 80.1 7.9 70 240-319 81-153 (440)
67 2id5_A Lingo-1, leucine rich r 98.2 2.3E-06 7.8E-11 80.4 8.4 72 238-318 47-120 (477)
68 1xku_A Decorin; proteoglycan, 98.2 3E-06 1E-10 75.7 8.5 72 238-319 67-138 (330)
69 4ezg_A Putative uncharacterize 98.2 7E-07 2.4E-11 73.8 4.0 43 273-317 130-174 (197)
70 2z63_A TOLL-like receptor 4, v 98.2 2.4E-06 8.2E-11 81.9 8.4 42 275-317 120-164 (570)
71 3oja_B Anopheles plasmodium-re 98.2 3.1E-06 1.1E-10 82.0 9.1 85 222-318 100-187 (597)
72 3v47_A TOLL-like receptor 5B a 98.2 2E-06 6.8E-11 80.2 7.4 65 241-314 341-407 (455)
73 2z63_A TOLL-like receptor 4, v 98.2 2.8E-06 9.4E-11 81.4 7.8 88 222-321 53-145 (570)
74 4eco_A Uncharacterized protein 98.2 3E-06 1E-10 82.7 8.0 68 244-321 510-585 (636)
75 3o53_A Protein LRIM1, AGAP0063 98.2 1.9E-06 6.4E-11 76.7 6.0 65 244-319 166-231 (317)
76 2z66_A Variable lymphocyte rec 98.2 2.5E-06 8.6E-11 75.2 6.7 69 240-317 168-238 (306)
77 2xwt_C Thyrotropin receptor; s 98.2 2.2E-06 7.7E-11 72.8 5.9 69 240-319 98-173 (239)
78 1xeu_A Internalin C; cellular 98.2 4E-06 1.4E-10 72.6 7.5 80 222-318 64-144 (263)
79 4ecn_A Leucine-rich repeat pro 98.2 3.4E-06 1.2E-10 85.0 8.1 86 222-320 549-637 (876)
80 1wwl_A Monocyte differentiatio 98.2 2.9E-06 1E-10 75.2 6.8 90 220-319 200-291 (312)
81 1xeu_A Internalin C; cellular 98.2 1.4E-06 4.8E-11 75.5 4.6 82 222-319 42-123 (263)
82 4ezg_A Putative uncharacterize 98.1 3.1E-06 1.1E-10 69.8 6.5 82 221-316 112-195 (197)
83 2z80_A TOLL-like receptor 2, v 98.1 2.3E-06 7.9E-11 77.2 6.0 45 274-319 95-141 (353)
84 4eco_A Uncharacterized protein 98.1 2.4E-06 8.3E-11 83.4 6.5 71 240-320 199-294 (636)
85 3t6q_A CD180 antigen; protein- 98.1 3.3E-06 1.1E-10 81.7 7.5 71 238-317 72-144 (606)
86 2ifg_A High affinity nerve gro 98.1 5.8E-06 2E-10 74.3 8.5 69 243-321 27-99 (347)
87 2z81_A CD282 antigen, TOLL-lik 98.1 3.8E-06 1.3E-10 80.2 7.6 69 241-319 381-468 (549)
88 1h6t_A Internalin B; cell adhe 98.1 3.8E-06 1.3E-10 73.8 7.0 65 242-318 151-216 (291)
89 1ziw_A TOLL-like receptor 3; i 98.1 5.3E-06 1.8E-10 81.4 8.6 69 239-317 65-136 (680)
90 1h6t_A Internalin B; cell adhe 98.1 2.9E-06 1E-10 74.6 6.0 82 221-318 68-150 (291)
91 2z81_A CD282 antigen, TOLL-lik 98.1 3.2E-06 1.1E-10 80.7 6.7 71 238-318 65-140 (549)
92 1ziw_A TOLL-like receptor 3; i 98.1 3.7E-06 1.3E-10 82.5 7.3 87 222-319 26-114 (680)
93 3rgz_A Protein brassinosteroid 98.1 3.3E-06 1.1E-10 84.3 7.0 74 238-320 647-723 (768)
94 2xwt_C Thyrotropin receptor; s 98.1 3E-06 1E-10 72.0 5.7 72 238-320 71-149 (239)
95 4glp_A Monocyte differentiatio 98.1 2E-06 6.9E-11 76.2 4.7 89 221-319 197-289 (310)
96 2z66_A Variable lymphocyte rec 98.1 2E-06 6.8E-11 75.9 4.6 68 243-320 97-170 (306)
97 1h6u_A Internalin H; cell adhe 98.1 5E-06 1.7E-10 73.6 7.2 65 242-318 102-167 (308)
98 1h6u_A Internalin H; cell adhe 98.1 4.1E-06 1.4E-10 74.2 6.5 65 243-319 81-146 (308)
99 4ecn_A Leucine-rich repeat pro 98.1 5.9E-06 2E-10 83.3 8.2 67 245-321 751-825 (876)
100 1ds9_A Outer arm dynein; leuci 98.1 7.2E-08 2.5E-12 79.9 -4.9 66 242-318 65-131 (198)
101 3t6q_A CD180 antigen; protein- 98.1 6.8E-06 2.3E-10 79.4 8.3 71 238-318 96-169 (606)
102 3zyi_A Leucine-rich repeat-con 98.1 7.2E-06 2.5E-10 76.5 8.0 79 238-317 138-233 (452)
103 3oja_A Leucine-rich immune mol 98.1 3.9E-06 1.3E-10 79.3 6.1 65 245-320 167-232 (487)
104 3zyj_A Leucine-rich repeat-con 98.1 8.8E-06 3E-10 75.7 8.2 93 222-317 113-222 (440)
105 3v47_A TOLL-like receptor 5B a 98.0 1.2E-05 4.1E-10 74.8 8.8 89 222-321 300-390 (455)
106 3j0a_A TOLL-like receptor 5; m 98.0 6.1E-06 2.1E-10 83.2 7.0 73 237-318 63-139 (844)
107 3rgz_A Protein brassinosteroid 98.0 3.2E-06 1.1E-10 84.4 4.8 72 241-321 626-700 (768)
108 4fmz_A Internalin; leucine ric 98.0 7.5E-06 2.5E-10 73.4 6.8 58 243-312 84-142 (347)
109 3bz5_A Internalin-J, INLJ; leu 98.0 1.1E-05 3.9E-10 75.5 8.0 62 243-318 81-143 (457)
110 3o53_A Protein LRIM1, AGAP0063 98.0 5.6E-06 1.9E-10 73.6 5.6 62 244-315 188-250 (317)
111 2fna_A Conserved hypothetical 98.0 6.4E-05 2.2E-09 67.3 12.6 162 13-186 169-356 (357)
112 1o6v_A Internalin A; bacterial 98.0 8.2E-06 2.8E-10 76.5 6.8 64 243-318 86-150 (466)
113 1wwl_A Monocyte differentiatio 98.0 7.6E-06 2.6E-10 72.5 6.2 60 244-313 118-184 (312)
114 2z7x_B TOLL-like receptor 1, v 98.0 6E-06 2.1E-10 78.3 5.8 82 221-316 45-129 (520)
115 2qen_A Walker-type ATPase; unk 98.0 0.00031 1.1E-08 62.6 16.8 163 13-187 163-349 (350)
116 3j0a_A TOLL-like receptor 5; m 98.0 1E-05 3.6E-10 81.5 7.7 69 239-316 89-162 (844)
117 3oja_A Leucine-rich immune mol 98.0 6.1E-06 2.1E-10 78.0 5.6 89 222-321 121-210 (487)
118 3a79_B TLR6, VLRB.59, TOLL-lik 98.0 1.6E-05 5.6E-10 76.2 8.4 40 281-320 451-491 (562)
119 1m9s_A Internalin B; cell inva 98.0 1.1E-05 3.7E-10 78.3 7.0 83 221-319 131-214 (605)
120 4glp_A Monocyte differentiatio 98.0 2.6E-06 9E-11 75.4 2.5 45 276-321 221-270 (310)
121 2id5_A Lingo-1, leucine rich r 97.9 1.6E-05 5.4E-10 74.6 7.3 88 222-320 225-314 (477)
122 1m9s_A Internalin B; cell inva 97.9 1.4E-05 4.6E-10 77.6 6.7 84 220-319 108-192 (605)
123 1o6v_A Internalin A; bacterial 97.9 1.1E-05 3.9E-10 75.5 5.4 66 242-319 63-129 (466)
124 3bz5_A Internalin-J, INLJ; leu 97.9 1.2E-05 4.3E-10 75.2 5.4 79 222-318 43-122 (457)
125 4fmz_A Internalin; leucine ric 97.8 1E-05 3.4E-10 72.5 4.4 65 242-317 260-326 (347)
126 1ds9_A Outer arm dynein; leuci 97.8 1.2E-07 4.1E-12 78.5 -7.7 65 241-316 87-154 (198)
127 3g06_A SSPH2 (leucine-rich rep 97.8 4.1E-05 1.4E-09 74.5 8.9 37 281-319 122-158 (622)
128 1jl5_A Outer protein YOPM; leu 97.8 4.9E-05 1.7E-09 71.1 7.9 80 222-319 132-212 (454)
129 3cvr_A Invasion plasmid antige 97.7 5.3E-05 1.8E-09 72.8 7.9 62 245-321 158-226 (571)
130 3g06_A SSPH2 (leucine-rich rep 97.7 4.6E-05 1.6E-09 74.0 7.3 34 281-314 262-296 (622)
131 3cvr_A Invasion plasmid antige 97.7 7.5E-05 2.6E-09 71.8 7.8 56 247-315 180-243 (571)
132 4ay9_X Follicle-stimulating ho 97.6 5.9E-05 2E-09 67.9 5.6 73 238-320 144-220 (350)
133 4ay9_X Follicle-stimulating ho 97.6 8.9E-05 3E-09 66.7 6.7 87 222-319 31-121 (350)
134 1jl5_A Outer protein YOPM; leu 97.5 0.00018 6E-09 67.3 7.8 64 242-319 190-254 (454)
135 3rw6_A Nuclear RNA export fact 97.4 6E-05 2E-09 65.2 3.2 64 244-315 167-233 (267)
136 2ca6_A RAN GTPase-activating p 97.4 3.8E-05 1.3E-09 70.0 1.4 95 221-320 187-297 (386)
137 2ca6_A RAN GTPase-activating p 97.3 2.6E-05 9E-10 71.0 -0.9 95 219-318 214-319 (386)
138 1w5s_A Origin recognition comp 97.0 0.0022 7.5E-08 58.5 9.1 153 13-171 178-371 (412)
139 2ast_B S-phase kinase-associat 97.0 6.8E-05 2.3E-09 66.7 -1.1 83 221-313 118-206 (336)
140 2ast_B S-phase kinase-associat 97.0 5.4E-05 1.8E-09 67.4 -2.0 86 220-313 141-233 (336)
141 3goz_A Leucine-rich repeat-con 96.7 0.00037 1.3E-08 62.9 1.3 60 247-315 80-151 (362)
142 3rfe_A Platelet glycoprotein I 96.5 0.0046 1.6E-07 47.1 5.8 51 251-313 12-66 (130)
143 3goz_A Leucine-rich repeat-con 96.4 0.00069 2.4E-08 61.1 0.6 88 223-319 24-126 (362)
144 1z7x_W Ribonuclease inhibitor; 96.4 0.00057 1.9E-08 63.4 -0.1 64 248-316 86-156 (461)
145 1z7x_W Ribonuclease inhibitor; 96.3 0.00038 1.3E-08 64.6 -1.8 87 221-315 28-126 (461)
146 3sb4_A Hypothetical leucine ri 96.2 0.01 3.4E-07 52.6 7.4 85 222-320 227-315 (329)
147 3un9_A NLR family member X1; l 95.8 0.0012 4.1E-08 59.9 -0.5 90 221-315 155-252 (372)
148 3rw6_A Nuclear RNA export fact 95.7 0.0048 1.7E-07 53.2 2.9 79 221-309 170-258 (267)
149 3e4g_A ATP synthase subunit S, 95.7 0.0045 1.5E-07 49.8 2.4 85 220-315 60-153 (176)
150 2qby_B CDC6 homolog 3, cell di 95.6 0.37 1.3E-05 43.1 15.0 149 13-171 163-339 (384)
151 3ogk_B Coronatine-insensitive 95.3 0.002 6.8E-08 61.7 -1.1 63 245-315 461-526 (592)
152 3sb4_A Hypothetical leucine ri 95.2 0.034 1.2E-06 49.1 6.7 41 278-320 225-267 (329)
153 3un9_A NLR family member X1; l 95.0 0.0031 1.1E-07 57.2 -0.9 67 245-316 153-225 (372)
154 1njg_A DNA polymerase III subu 95.0 0.025 8.6E-07 46.8 4.8 78 11-91 153-231 (250)
155 1io0_A Tropomodulin; LRR prote 94.9 0.0046 1.6E-07 50.1 -0.0 90 221-315 65-164 (185)
156 2ra8_A Uncharacterized protein 94.8 0.003 1E-07 57.0 -1.5 62 245-315 250-320 (362)
157 2qby_A CDC6 homolog 1, cell di 94.3 0.81 2.8E-05 40.6 13.6 152 13-171 162-348 (386)
158 2p1m_B Transport inhibitor res 93.7 0.013 4.6E-07 55.9 0.4 92 221-318 130-228 (594)
159 3ogk_B Coronatine-insensitive 93.6 0.039 1.3E-06 52.7 3.5 42 272-314 263-305 (592)
160 1io0_A Tropomodulin; LRR prote 93.6 0.011 3.7E-07 47.8 -0.4 91 220-315 35-136 (185)
161 3e4g_A ATP synthase subunit S, 93.4 0.021 7.3E-07 45.8 1.1 60 247-315 61-128 (176)
162 1fnn_A CDC6P, cell division co 93.3 1 3.5E-05 40.1 12.3 153 13-172 158-352 (389)
163 2v1u_A Cell division control p 92.8 1.4 4.8E-05 39.1 12.5 150 12-171 165-351 (387)
164 2p1m_B Transport inhibitor res 92.7 0.01 3.5E-07 56.7 -2.2 84 221-313 105-195 (594)
165 2ra8_A Uncharacterized protein 89.8 0.15 5.1E-06 45.8 2.5 55 241-310 166-227 (362)
166 1sxj_B Activator 1 37 kDa subu 88.3 1.9 6.3E-05 37.2 8.6 75 11-88 134-210 (323)
167 3rfe_A Platelet glycoprotein I 88.1 0.39 1.3E-05 36.2 3.5 35 248-292 32-67 (130)
168 2chg_A Replication factor C sm 87.9 0.47 1.6E-05 38.3 4.2 76 11-89 129-205 (226)
169 4fdw_A Leucine rich hypothetic 87.3 0.71 2.4E-05 41.9 5.4 64 237-311 170-235 (401)
170 4fdw_A Leucine rich hypothetic 86.3 1.2 4.2E-05 40.3 6.4 43 275-320 319-363 (401)
171 1iqp_A RFCS; clamp loader, ext 78.5 3 0.0001 35.9 5.6 79 10-91 136-215 (327)
172 2chq_A Replication factor C sm 63.8 37 0.0013 28.6 9.2 82 4-88 122-204 (319)
173 1d2n_A N-ethylmaleimide-sensit 62.3 29 0.00098 28.9 8.0 91 12-109 165-264 (272)
174 4h09_A Hypothetical leucine ri 61.5 18 0.00062 31.7 6.9 33 275-309 306-340 (379)
175 3bos_A Putative DNA replicatio 60.1 31 0.001 27.6 7.7 51 36-88 167-217 (242)
176 1jr3_A DNA polymerase III subu 53.9 22 0.00077 31.0 6.1 74 12-88 147-221 (373)
177 1hqc_A RUVB; extended AAA-ATPa 53.8 46 0.0016 28.2 8.1 148 14-175 138-302 (324)
178 4h09_A Hypothetical leucine ri 52.2 18 0.00062 31.7 5.3 63 238-311 254-319 (379)
179 2z4s_A Chromosomal replication 47.5 36 0.0012 30.9 6.5 70 12-86 225-304 (440)
180 2vda_B Maltoporin; sugar trans 45.0 12 0.00043 18.8 1.6 17 78-94 9-25 (28)
181 1pgv_A TMD-1, tropomodulin TMD 41.7 5.8 0.0002 32.1 0.1 70 239-313 62-137 (197)
182 1a5t_A Delta prime, HOLB; zinc 40.8 53 0.0018 28.4 6.4 71 10-88 134-205 (334)
183 1sxj_A Activator 1 95 kDa subu 39.3 1.6E+02 0.0054 27.2 9.7 51 35-88 201-253 (516)
184 4fs7_A Uncharacterized protein 38.8 27 0.00093 30.9 4.2 36 275-312 339-376 (394)
185 4fs7_A Uncharacterized protein 38.3 50 0.0017 29.1 5.9 69 238-319 288-359 (394)
186 4gt6_A Cell surface protein; l 36.0 59 0.002 28.7 6.0 63 238-312 302-367 (394)
187 4gt6_A Cell surface protein; l 33.4 78 0.0027 27.8 6.3 68 239-319 280-350 (394)
188 2gkw_B Tumor necrosis factor r 25.7 47 0.0016 16.6 1.9 18 7-24 3-20 (26)
189 3pfi_A Holliday junction ATP-d 25.5 3E+02 0.01 23.1 12.0 72 15-88 155-227 (338)
190 1l8q_A Chromosomal replication 23.3 3.2E+02 0.011 22.9 8.3 64 13-82 130-202 (324)
191 1jr3_D DNA polymerase III, del 21.7 1.4E+02 0.0047 25.6 5.6 76 9-87 102-184 (343)
192 1sxj_E Activator 1 40 kDa subu 21.3 1.4E+02 0.0046 25.6 5.5 75 12-89 162-238 (354)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=1.3e-30 Score=251.61 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=147.8
Q ss_pred CCceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhc
Q 036903 13 PGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLH 92 (323)
Q Consensus 13 ~gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~ 92 (323)
+||+||||||++.++..++ ....+|.|++|+.++||+||.+.+|+... ++++++++.+|+++|+|+||||+++|++|+
T Consensus 264 ~gs~ilvTTR~~~v~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~ 341 (549)
T 2a5y_B 264 LRLRCLVTTRDVEISNAAS-QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCE 341 (549)
T ss_dssp TTCEEEEEESBGGGGGGCC-SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred CCCEEEEEcCCHHHHHHcC-CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhc
Confidence 7999999999999998775 13468999999999999999999976543 467888999999999999999999999998
Q ss_pred CCChHHHHHHHHH-hhcCCcccHHHHHHHHhcCCChhhHhHhh-----------hhcccCCCCCHHHHHHHHhhc--ch-
Q 036903 93 RKSKLDWENALEN-LKRSSDFEIYDVLKISYNELNPEEKSLFL-----------DIACFFAGEDKNLVTKILDDS--NY- 157 (323)
Q Consensus 93 ~~~~~~w~~~l~~-l~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~~~~l~~~w~~~--g~- 157 (323)
.++ ++|...+.. ++.....++..++.+||++||++.|.||+ |||+||+++.++ +++|+++ |+
T Consensus 342 ~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i 418 (549)
T 2a5y_B 342 PKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDI 418 (549)
T ss_dssp SSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC--
T ss_pred cch-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeecccee
Confidence 773 334333332 33324567888999999999999999999 999999998888 8899998 55
Q ss_pred --------------HHHHhhhCCcceEcC---CCeEEecHHHHHHHHHHHhhhcc
Q 036903 158 --------------VLNVLVDKSLLRISR---YNKLQMHDLLQEMGREIVRQESV 195 (323)
Q Consensus 158 --------------~l~~L~~~~ll~~~~---~~~~~mh~lv~~~~~~~~~~~~~ 195 (323)
+|++|+++||++... ..+|+|||+||+||++++.+++.
T Consensus 419 ~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 419 CSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -----CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 799999999999864 34799999999999998877653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=1.6e-25 Score=234.29 Aligned_cols=178 Identities=25% Similarity=0.373 Sum_probs=151.4
Q ss_pred CCCCceEEEEcCChhhHhhcCCCCcceEEcCC-CCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhh
Q 036903 11 FGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRG-LNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGS 89 (323)
Q Consensus 11 ~~~gs~IlvTTR~~~v~~~~~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~ 89 (323)
.++||+||||||++.++..+. .....+.+++ |++++|++||...++.. .++.++++++|+++|+|+||||+++|+
T Consensus 254 ~~~~~~ilvTtR~~~~~~~~~-~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~ 329 (1249)
T 3sfz_A 254 FDNQCQILLTTRDKSVTDSVM-GPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGA 329 (1249)
T ss_dssp TCSSCEEEEEESSTTTTTTCC-SCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHH
T ss_pred hcCCCEEEEEcCCHHHHHhhc-CCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHH
Confidence 478999999999999985432 2567899996 99999999999988433 234556799999999999999999999
Q ss_pred hhcCCChHHHHHHHHHhhcCC-----------cccHHHHHHHHhcCCChhhHhHhhhhcccCCCC--CHHHHHHHHhhcc
Q 036903 90 FLHRKSKLDWENALENLKRSS-----------DFEIYDVLKISYNELNPEEKSLFLDIACFFAGE--DKNLVTKILDDSN 156 (323)
Q Consensus 90 ~L~~~~~~~w~~~l~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~--~~~~l~~~w~~~g 156 (323)
+|+.++ .+|+.+++++.... ..++..++.+||+.||++.|+||+|||+||+++ +.+.++.+|.+++
T Consensus 330 ~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~ 408 (1249)
T 3sfz_A 330 LLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET 408 (1249)
T ss_dssp HHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH
T ss_pred HhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH
Confidence 999876 57999998875442 246899999999999999999999999999984 5567999998776
Q ss_pred h----HHHHhhhCCcceEcCCC---eEEecHHHHHHHHHHHhhh
Q 036903 157 Y----VLNVLVDKSLLRISRYN---KLQMHDLLQEMGREIVRQE 193 (323)
Q Consensus 157 ~----~l~~L~~~~ll~~~~~~---~~~mh~lv~~~~~~~~~~~ 193 (323)
. ++++|+++||++...++ +|+||++||+|+++.+.++
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 6 99999999999987655 4999999999999987665
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.88 E-value=3.2e-23 Score=206.37 Aligned_cols=157 Identities=20% Similarity=0.303 Sum_probs=129.6
Q ss_pred CCCceEEEEcCChhhHhhcCCCCcceEEcC------CCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHH
Q 036903 12 GPGSRIIVTTRDKRVLDNFGVPNTNIYKVR------GLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALR 85 (323)
Q Consensus 12 ~~gs~IlvTTR~~~v~~~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~ 85 (323)
++||+||||||++.++..+. ....|.++ +|+.+|||+||.+.. +.. . .++..+| |+|+||||+
T Consensus 263 ~pGSRILVTTRd~~Va~~l~--g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~eI---CgGLPLALk 331 (1221)
T 1vt4_I 263 NLSCKILLTTRFKQVTDFLS--AATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPREV---LTTNPRRLS 331 (1221)
T ss_dssp HSSCCEEEECSCSHHHHHHH--HHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHHH---CCCCHHHHH
T ss_pred CCCeEEEEeccChHHHHhcC--CCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHHHH---hCCCHHHHH
Confidence 47999999999999987554 33456777 999999999999984 322 1 2334444 999999999
Q ss_pred HHhhhhcCC--ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhh-HhHhhhhcccCCCCC--HHHHHHHHhhcch---
Q 036903 86 VLGSFLHRK--SKLDWENALENLKRSSDFEIYDVLKISYNELNPEE-KSLFLDIACFFAGED--KNLVTKILDDSNY--- 157 (323)
Q Consensus 86 ~ig~~L~~~--~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~s~fp~~~~--~~~l~~~w~~~g~--- 157 (323)
++|++|+.+ +..+|+.. ....+..++.+||+.||++. |+||++||+||+++. .+.++.+|+++|.
T Consensus 332 LaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedA 404 (1221)
T 1vt4_I 332 IIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404 (1221)
T ss_dssp HHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHH
T ss_pred HHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHH
Confidence 999999987 67788753 34689999999999999999 999999999999855 4569999998852
Q ss_pred --HHHHhhhCCcceEcC-CCeEEecHHHHHHH
Q 036903 158 --VLNVLVDKSLLRISR-YNKLQMHDLLQEMG 186 (323)
Q Consensus 158 --~l~~L~~~~ll~~~~-~~~~~mh~lv~~~~ 186 (323)
++++|+++||++..+ .++|+|||++++++
T Consensus 405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 999999999999863 56899999999865
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.88 E-value=3.7e-22 Score=194.22 Aligned_cols=173 Identities=26% Similarity=0.384 Sum_probs=142.0
Q ss_pred CCCCceEEEEcCChhhHhhcCCCCcceEEc---CCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHH
Q 036903 11 FGPGSRIIVTTRDKRVLDNFGVPNTNIYKV---RGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVL 87 (323)
Q Consensus 11 ~~~gs~IlvTTR~~~v~~~~~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~i 87 (323)
.++||+||||||+..++..+. ...+.+ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||..+
T Consensus 254 l~~~~~ilvTsR~~~~~~~~~---~~~~~v~~l~~L~~~ea~~L~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~~ 327 (591)
T 1z6t_A 254 FDSQCQILLTTRDKSVTDSVM---GPKYVVPVESSLGKEKGLEILSLFVNMKK---ADLPEQAHSIIKECKGSPLVVSLI 327 (591)
T ss_dssp TCSSCEEEEEESCGGGGTTCC---SCEEEEECCSSCCHHHHHHHHHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCeEEEECCCcHHHHhcC---CCceEeecCCCCCHHHHHHHHHHHhCCCc---ccccHHHHHHHHHhCCCcHHHHHH
Confidence 467999999999999887653 234554 58999999999999986422 223456899999999999999999
Q ss_pred hhhhcCCChHHHHHHHHHhhcCC-----------cccHHHHHHHHhcCCChhhHhHhhhhcccCCC--CCHHHHHHHHhh
Q 036903 88 GSFLHRKSKLDWENALENLKRSS-----------DFEIYDVLKISYNELNPEEKSLFLDIACFFAG--EDKNLVTKILDD 154 (323)
Q Consensus 88 g~~L~~~~~~~w~~~l~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~--~~~~~l~~~w~~ 154 (323)
|++++.+. .+|+.+++.+.... ..++..++..||+.||++.|.||++||+||++ ++.+.+..+|..
T Consensus 328 a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~ 406 (591)
T 1z6t_A 328 GALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM 406 (591)
T ss_dssp HHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTC
T ss_pred HHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhcc
Confidence 99998774 47998888876432 24789999999999999999999999999987 455668899987
Q ss_pred cch----HHHHhhhCCcceEcCC---CeEEecHHHHHHHHHHH
Q 036903 155 SNY----VLNVLVDKSLLRISRY---NKLQMHDLLQEMGREIV 190 (323)
Q Consensus 155 ~g~----~l~~L~~~~ll~~~~~---~~~~mh~lv~~~~~~~~ 190 (323)
++. ++++|+++||++...+ ..|+||+++|++++...
T Consensus 407 ~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 407 ETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 644 8999999999986543 36999999999999873
No 5
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=2.8e-08 Score=80.83 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=69.3
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-C
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-L 299 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i 299 (323)
.++.+.+..+.+ ..+.+..|.++++|+.|+|++|.+ ..+|.. +..++ +|++|+|++|.+..+|.. +
T Consensus 34 ~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l---------~~i~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~ 101 (174)
T 2r9u_A 34 DKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKL---------TAIPTGVFDKLT-QLTQLDLNDNHLKSIPRGAF 101 (174)
T ss_dssp TCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred CCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCC---------CccChhHhCCcc-hhhEEECCCCccceeCHHHh
Confidence 455554444433 345567889999999999999987 567765 57898 999999999999999987 6
Q ss_pred C-CCCceEEEcCCCcccccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+ +.+|++|+|++|.+.-.|.+
T Consensus 102 ~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp TTCTTCSEEECCSSCBCTTBGG
T ss_pred ccccCCCEEEeCCCCccccccc
Confidence 6 99999999999988777654
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.69 E-value=3.9e-08 Score=83.51 Aligned_cols=86 Identities=20% Similarity=0.240 Sum_probs=52.8
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCCCC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTNLI 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~i~ 300 (323)
.++.+.+..+.+ ..+....|.++++|++|+|++|.+ ..+|.. +..++ +|++|+|++|.+..+|..+.
T Consensus 65 ~L~~L~L~~N~l--~~i~~~~~~~l~~L~~L~Ls~N~l---------~~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~ 132 (229)
T 3e6j_A 65 NLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQL---------TVLPSAVFDRLV-HLKELFMCCNKLTELPRGIE 132 (229)
T ss_dssp TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCSCCTTGG
T ss_pred CCcEEECCCCCC--CCcChhhcccCCCcCEEECCCCcC---------CccChhHhCcch-hhCeEeccCCcccccCcccc
Confidence 344444433332 233445566667777777776665 344433 46666 77777777777777777765
Q ss_pred -CCCceEEEcCCCccccccc
Q 036903 301 -TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 301 -L~~L~~L~l~~~~i~~lP~ 319 (323)
+.+|++|+|++|.++.+|.
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCT
T ss_pred cCCCCCEEECCCCcCCccCH
Confidence 7777777777777776664
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.68 E-value=6e-08 Score=82.36 Aligned_cols=89 Identities=22% Similarity=0.212 Sum_probs=72.5
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTNL 299 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~i 299 (323)
..++.+.+..+.+ ..+.+..|.++++|+.|+|++|.+ ..+|. .+..++ +|++|+|++|.+..+|...
T Consensus 40 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l---------~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 40 TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQL---------GALPVGVFDSLT-QLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTT
T ss_pred CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCC---------CCcChhhcccCC-CcCEEECCCCcCCccChhH
Confidence 3455555554443 345567889999999999999987 56664 468899 9999999999999998874
Q ss_pred -C-CCCceEEEcCCCccccccccc
Q 036903 300 -I-TDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 300 -~-L~~L~~L~l~~~~i~~lP~~i 321 (323)
+ +.+|++|++++|+++.+|.++
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~~~ 131 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPRGI 131 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTG
T ss_pred hCcchhhCeEeccCCcccccCccc
Confidence 6 999999999999999999765
No 8
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.64 E-value=9.7e-08 Score=78.90 Aligned_cols=86 Identities=19% Similarity=0.273 Sum_probs=60.3
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCC-C
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTN-L 299 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~-i 299 (323)
.++.+.+..+.+.. + +..|.++++|+.|+|++|.+ ..++ ..+..++ +|++|+|++|.+..+|.. +
T Consensus 32 ~l~~L~L~~n~i~~--i-p~~~~~l~~L~~L~Ls~N~i---------~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f 98 (193)
T 2wfh_A 32 DVTELYLDGNQFTL--V-PKELSNYKHLTLIDLSNNRI---------STLSNQSFSNMT-QLLTLILSYNRLRCIPPRTF 98 (193)
T ss_dssp TCCEEECCSSCCCS--C-CGGGGGCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTT
T ss_pred CCCEEECCCCcCch--h-HHHhhcccCCCEEECCCCcC---------CEeCHhHccCCC-CCCEEECCCCccCEeCHHHh
Confidence 45555555444432 2 25778888888888888876 3343 4577787 888888888888877764 5
Q ss_pred C-CCCceEEEcCCCcccccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+ +.+|++|+|++|.++.+|.+
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEG 120 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCCCCEEECCCCCCCeeChh
Confidence 5 88888888888888877764
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.63 E-value=8.3e-08 Score=81.00 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=51.7
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCC-CCC-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPT-NLI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~-~i~-L~~L~~L~l~~~~i 314 (323)
+.+..|.++++|++|+|++|.+ ..+|.. +..++ +|++|+|++|.+..+|. .++ +.+|++|+|++|.+
T Consensus 71 ~~~~~~~~l~~L~~L~Ls~N~l---------~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 71 LAPDAFQGLRSLNSLVLYGNKI---------TELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp ECTTTTTTCSSCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCHHHhhCCcCCCEEECCCCcC---------CccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 4456677777777777777766 455554 46677 78888888887777744 455 78888888888877
Q ss_pred cccccc
Q 036903 315 ELLWEE 320 (323)
Q Consensus 315 ~~lP~~ 320 (323)
+.+|.+
T Consensus 141 ~~~~~~ 146 (220)
T 2v9t_B 141 QTIAKG 146 (220)
T ss_dssp SCCCTT
T ss_pred CEECHH
Confidence 777753
No 10
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.63 E-value=2.3e-08 Score=99.27 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=60.9
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI- 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~- 300 (323)
.++.+.+..+.+. ..+..|.++++|++|+|++|.+ ..+|..++.|+ +|++|+|++|.+..+|.+++
T Consensus 248 ~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~Ls~N~l---------~~lp~~~~~l~-~L~~L~L~~N~l~~lp~~~~~ 314 (727)
T 4b8c_D 248 FLTRLYLNGNSLT---ELPAEIKNLSNLRVLDLSHNRL---------TSLPAELGSCF-QLKYFYFFDNMVTTLPWEFGN 314 (727)
T ss_dssp SCSCCBCTTSCCS---CCCGGGGGGTTCCEEECTTSCC---------SSCCSSGGGGT-TCSEEECCSSCCCCCCSSTTS
T ss_pred CCCEEEeeCCcCc---ccChhhhCCCCCCEEeCcCCcC---------CccChhhcCCC-CCCEEECCCCCCCccChhhhc
Confidence 3444444434332 2345677888888888888876 57788888888 88888888888888888887
Q ss_pred CCCceEEEcCCCccccc
Q 036903 301 TDKLVVLNLPCSNVELL 317 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~l 317 (323)
|.+|++|+|++|.+...
T Consensus 315 l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CTTCCCEECTTSCCCSH
T ss_pred CCCccEEeCCCCccCCC
Confidence 88888888888887643
No 11
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.63 E-value=1.2e-07 Score=76.72 Aligned_cols=85 Identities=21% Similarity=0.258 Sum_probs=66.3
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-C
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-L 299 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i 299 (323)
.++.+.+..+.+ ..+.+..|.++++|++|+|++|.+ ..+|.. +..++ +|++|+|++|.+..+|.. +
T Consensus 31 ~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l---------~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~ 98 (170)
T 3g39_A 31 TTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQL---------TVLPAGVFDKLT-QLTQLSLNDNQLKSIPRGAF 98 (170)
T ss_dssp TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred CCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCc---------CccChhhccCCC-CCCEEECCCCccCEeCHHHh
Confidence 445554444433 345577889999999999999987 566665 58898 999999999999999886 6
Q ss_pred C-CCCceEEEcCCCcccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP 318 (323)
+ +.+|++|+|++|.+.-.+
T Consensus 99 ~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTCTTCCEEECCSSCBCTTB
T ss_pred cCCCCCCEEEeCCCCCCCCc
Confidence 6 999999999999765443
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.61 E-value=1.2e-07 Score=79.98 Aligned_cols=72 Identities=21% Similarity=0.208 Sum_probs=44.4
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCccc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~ 315 (323)
+....|..+++|+.|+|++|.+. ...|..+..++ +|++|+|++|.+..+|..+ . +.+|++|+|++|.++
T Consensus 47 i~~~~~~~l~~L~~L~Ls~N~i~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 47 IPPGAFSPYKKLRRIDLSNNQIS--------ELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp ECTTSSTTCTTCCEEECCSSCCC--------EECTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCHhHhhCCCCCCEEECCCCcCC--------CcCHHHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 34445666666666666666651 22355666666 6666666666666666653 4 666666666666666
Q ss_pred ccc
Q 036903 316 LLW 318 (323)
Q Consensus 316 ~lP 318 (323)
.+|
T Consensus 118 ~~~ 120 (220)
T 2v9t_B 118 CLR 120 (220)
T ss_dssp CCC
T ss_pred EeC
Confidence 554
No 13
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.61 E-value=1.4e-07 Score=76.45 Aligned_cols=73 Identities=26% Similarity=0.341 Sum_probs=41.1
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i 314 (323)
+....|.++++|++|++++|.+ ..+|.. +..++ +|++|++++|.+..+|... + +.+|++|++++|.+
T Consensus 43 ~~~~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 43 LPHGVFDKLTQLTKLSLSQNQI---------QSLPDGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp CCTTTTTTCTTCSEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eCHHHhcCcccccEEECCCCcc---------eEeChhHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 3344456666666666666655 333332 45555 6666666666666665542 4 66666666666666
Q ss_pred cccccc
Q 036903 315 ELLWEE 320 (323)
Q Consensus 315 ~~lP~~ 320 (323)
+.+|.+
T Consensus 113 ~~~~~~ 118 (177)
T 2o6r_A 113 KSVPDG 118 (177)
T ss_dssp SCCCTT
T ss_pred eEeCHH
Confidence 555553
No 14
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.59 E-value=4e-08 Score=79.06 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=24.7
Q ss_pred CCccCcCCCceeEEecCCCCCCCCC----CCC-CCCceEEEcCCCcccccccc
Q 036903 273 QGLDYLPEELTYLHWHGYPLRTLPT----NLI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 273 ~~i~~L~~~Lr~L~l~~~~i~~LP~----~i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
..+..++ +|++|++++|.+..+|. .+. +++|++|++++|.+.++|++
T Consensus 114 ~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 114 EPLKKLE-CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp GGGSSCS-CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred HHHhcCC-CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 3445555 55555555555555554 333 55555555555555555544
No 15
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.59 E-value=3.8e-08 Score=79.97 Aligned_cols=85 Identities=22% Similarity=0.209 Sum_probs=64.9
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCc-cCcCCCceeEEecCCCCCCCCC--C
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGL-DYLPEELTYLHWHGYPLRTLPT--N 298 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i-~~L~~~Lr~L~l~~~~i~~LP~--~ 298 (323)
.++.+.+..+.+..+ ..|.++++|++|++++|.+ ..+|..+ ..++ +|++|++++|.+..+|. .
T Consensus 43 ~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~ 108 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRI---------CRIGEGLDQALP-DLTELILTNNSLVELGDLDP 108 (176)
T ss_dssp CCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCC---------CEECSCHHHHCT-TCCEEECCSCCCCCGGGGGG
T ss_pred CCCEEECCCCCCCcc----cccccCCCCCEEECCCCcc---------cccCcchhhcCC-CCCEEECCCCcCCcchhhHh
Confidence 455665555544332 4677888899999988887 5667665 7888 89999999998888887 6
Q ss_pred CC-CCCceEEEcCCCcccccccc
Q 036903 299 LI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 299 i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
++ +++|++|++++|.+..+|..
T Consensus 109 l~~l~~L~~L~l~~N~i~~~~~~ 131 (176)
T 1a9n_A 109 LASLKSLTYLCILRNPVTNKKHY 131 (176)
T ss_dssp GGGCTTCCEEECCSSGGGGSTTH
T ss_pred hhcCCCCCEEEecCCCCCCcHhH
Confidence 76 88999999999988887763
No 16
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.59 E-value=1.4e-07 Score=76.59 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=58.1
Q ss_pred CCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcccccccc
Q 036903 247 TNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 247 ~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
++|++|+|++|.+ ..+ |..+..++ +|++|+|++|.+..+|..+ + +.+|++|+|++|.++.+|.+
T Consensus 33 ~~L~~L~Ls~N~l---------~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 33 TDKQRLWLNNNQI---------TKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp TTCSEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEeCCCCc---------cccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence 7899999999988 444 67899999 9999999999999999975 6 99999999999999999985
No 17
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.58 E-value=3.8e-08 Score=79.16 Aligned_cols=87 Identities=21% Similarity=0.152 Sum_probs=71.9
Q ss_pred cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCC--C
Q 036903 220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP--T 297 (323)
Q Consensus 220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP--~ 297 (323)
...++.+.+..+.+... ..|..+++|++|++++|.+. ..+|..+..++ +|++|++++|.+..+| .
T Consensus 48 l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~ 114 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIF--------GGLDMLAEKLP-NLTHLNLSGNKLKDISTLE 114 (168)
T ss_dssp GGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCC--------SCCCHHHHHCT-TCCEEECBSSSCCSSGGGG
T ss_pred CCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCc--------hHHHHHHhhCC-CCCEEeccCCccCcchhHH
Confidence 44677777776655443 67889999999999999882 22677777799 9999999999999998 6
Q ss_pred CCC-CCCceEEEcCCCccccccc
Q 036903 298 NLI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 298 ~i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
.++ +++|++|++++|.+..+|.
T Consensus 115 ~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 115 PLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp GGSSCSCCCEEECCSSGGGTSTT
T ss_pred HHhcCCCCCEEEeeCCcCcchHH
Confidence 777 9999999999999998886
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.58 E-value=1.3e-07 Score=79.81 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=44.1
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCC-CCCCC-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTL-PTNLI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~L-P~~i~-L~~L~~L~l~~~~i 314 (323)
+.+..|.++++|+.|+|++|.+ ..+| ..+..++ +|++|+|++|.+..+ |..+. +.+|++|+|++|.+
T Consensus 72 i~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 72 IEEGAFEGASGVNEILLTSNRL---------ENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC---------CCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred ECHHHhCCCCCCCEEECCCCcc---------CccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 3445566677777777777665 3333 3366666 777777777766666 34455 77777777777766
Q ss_pred ccc
Q 036903 315 ELL 317 (323)
Q Consensus 315 ~~l 317 (323)
+.+
T Consensus 142 ~~~ 144 (220)
T 2v70_A 142 TTV 144 (220)
T ss_dssp CCB
T ss_pred CEE
Confidence 666
No 19
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.55 E-value=2.6e-08 Score=78.54 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=64.3
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCC--CC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP--TN 298 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP--~~ 298 (323)
..++.+.+..+.+... ..|.++++|++|++++|.+. ..+|..++.++ +|++|++++|.+..+| ..
T Consensus 42 ~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~l~-~L~~L~ls~N~i~~~~~~~~ 108 (149)
T 2je0_A 42 EELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVS--------GGLEVLAEKCP-NLTHLNLSGNKIKDLSTIEP 108 (149)
T ss_dssp TTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCC--------SCTHHHHHHCT-TCCEEECTTSCCCSHHHHGG
T ss_pred CCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCccc--------chHHHHhhhCC-CCCEEECCCCcCCChHHHHH
Confidence 4556665555544333 66788888899999888872 22666677788 8999999999888876 67
Q ss_pred CC-CCCceEEEcCCCccccccc
Q 036903 299 LI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 299 i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
++ +++|++|++++|.+..+|.
T Consensus 109 ~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 109 LKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp GGGCTTCCEEECTTCGGGGSTT
T ss_pred HhhCCCCCEEeCcCCcccchHH
Confidence 76 8999999999998887775
No 20
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.54 E-value=2.8e-07 Score=76.77 Aligned_cols=87 Identities=22% Similarity=0.316 Sum_probs=54.1
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-C
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-L 299 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i 299 (323)
.++.+.+..+.+. .+....|.++++|++|++++|.+ ..+|.. +..++ +|++|++++|.+..+|.. +
T Consensus 53 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~ 120 (208)
T 2o6s_A 53 SLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQL---------QSLPNGVFDKLT-QLKELALNTNQLQSLPDGVF 120 (208)
T ss_dssp TCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred cCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCcC---------CccCHhHhcCcc-CCCEEEcCCCcCcccCHhHh
Confidence 4455544433332 34445566777777777777765 344433 56676 777777777777777665 3
Q ss_pred C-CCCceEEEcCCCcccccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+ +.+|++|++++|.++.+|.+
T Consensus 121 ~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 121 DKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp TTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCCcCCEEECCCCccceeCHH
Confidence 5 77777777777777666653
No 21
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.53 E-value=5.3e-08 Score=96.67 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=73.3
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI 300 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~ 300 (323)
..++.+.+..+.+ ..+....| ++++|+.|+|++|.+ ..+|..++.|+ +|++|+|++|.+..+|..++
T Consensus 224 ~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l---------~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 224 QLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSL---------TELPAEIKNLS-NLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp CCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCC---------SCCCGGGGGGT-TCCEEECTTSCCSSCCSSGG
T ss_pred CCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcC---------cccChhhhCCC-CCCEEeCcCCcCCccChhhc
Confidence 3455555444433 34444444 899999999999987 58999999999 99999999999999999998
Q ss_pred -CCCceEEEcCCCccccccccc
Q 036903 301 -TDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 301 -L~~L~~L~l~~~~i~~lP~~i 321 (323)
|.+|++|+|++|.+..+|.++
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~ 312 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEF 312 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSST
T ss_pred CCCCCCEEECCCCCCCccChhh
Confidence 999999999999999999875
No 22
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.51 E-value=2.1e-07 Score=76.71 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=43.9
Q ss_pred hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccccc
Q 036903 242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELL 317 (323)
Q Consensus 242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~l 317 (323)
.|.++++|+.|+|++|.+. ...|..+..++ +|++|+|++|.+..+|.. ++ +++|++|+|++|.++.+
T Consensus 49 ~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 49 LFGRLPHLVKLELKRNQLT--------GIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp SGGGCTTCCEEECCSSCCC--------CBCTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred ccccCCCCCEEECCCCCCC--------CcCHhHcCCcc-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 3667777777777777651 22355666676 777777777777766654 44 77777777777766655
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.51 E-value=3.3e-07 Score=78.73 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=45.1
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i 314 (323)
+....|..+++|++|+|++|.+ ..+|.. +..++ +|++|+|++|.+..+|.. ++ +.+|++|+|++|.+
T Consensus 98 ~~~~~~~~l~~L~~L~L~~N~l---------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 98 LPLGVFDHLTQLDKLYLGGNQL---------KSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cChhHhcccCCCCEEEcCCCcC---------CCcChhHhccCC-cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 3444556666666666666655 344443 45666 777777777777766663 55 67777777777766
Q ss_pred ccccc
Q 036903 315 ELLWE 319 (323)
Q Consensus 315 ~~lP~ 319 (323)
+.+|.
T Consensus 168 ~~~~~ 172 (251)
T 3m19_A 168 QSVPH 172 (251)
T ss_dssp SCCCT
T ss_pred CccCH
Confidence 66664
No 24
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.51 E-value=3.7e-07 Score=75.97 Aligned_cols=87 Identities=23% Similarity=0.303 Sum_probs=70.4
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTNL- 299 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~i- 299 (323)
.++.+.+....+. .+....|.++++|++|+++++.+ ..+|.. +..++ +|++|++++|.+..+|...
T Consensus 29 ~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 29 QTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKL---------QSLPNGVFNKLT-SLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp TCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred CCcEEEcCCCccC--cCChhhhcccccCcEEECCCCcc---------CccChhhcCCCC-CcCEEECCCCcCCccCHhHh
Confidence 4555555544432 45566789999999999999987 455554 68898 9999999999999999874
Q ss_pred C-CCCceEEEcCCCcccccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+ +.+|++|++++|.++.+|.+
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~ 118 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDG 118 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT
T ss_pred cCccCCCEEEcCCCcCcccCHh
Confidence 6 99999999999999988875
No 25
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.50 E-value=1.6e-07 Score=76.15 Aligned_cols=86 Identities=17% Similarity=0.079 Sum_probs=68.2
Q ss_pred cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC
Q 036903 220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL 299 (323)
Q Consensus 220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i 299 (323)
...++.+.+..+.+..+ +......++|++|++++|.+ ..+ ..++.++ +|++|++++|.+..+|..+
T Consensus 18 ~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~l---------~~~-~~l~~l~-~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEI---------RKL-DGFPLLR-RLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp TTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSCC---------CEE-CCCCCCS-SCCEEECCSSCCCEECSCH
T ss_pred cCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCCC---------Ccc-cccccCC-CCCEEECCCCcccccCcch
Confidence 44566776666555432 22333344999999999988 445 6789999 9999999999999999887
Q ss_pred -C-CCCceEEEcCCCccccccc
Q 036903 300 -I-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 300 -~-L~~L~~L~l~~~~i~~lP~ 319 (323)
+ +++|++|++++|.+..+|.
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGD 105 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGG
T ss_pred hhcCCCCCEEECCCCcCCcchh
Confidence 6 9999999999999998886
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.50 E-value=1.2e-07 Score=84.92 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=51.4
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCCCCCCCC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRTLPTNLI 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~LP~~i~ 300 (323)
.++.+.+..+.+. ..+..|.++++|++|+|++|.+ ..+|..++.++ +|++|++++| .+..+|..++
T Consensus 105 ~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l---------~~lp~~l~~l~-~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 105 HLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPL---------RALPASIASLN-RLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp TCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCC---------CCCCGGGGGCT-TCCEEEEEEETTCCCCCSCSE
T ss_pred CCCEEECCCCCcc---chhHHHhccCCCCEEECCCCcc---------ccCcHHHhcCc-CCCEEECCCCCCccccChhHh
Confidence 4445444444332 2234456666666666666665 35666666666 6777777664 4556666552
Q ss_pred ----------CCCceEEEcCCCccccccccc
Q 036903 301 ----------TDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 301 ----------L~~L~~L~l~~~~i~~lP~~i 321 (323)
+.+|++|++++|.++.+|.++
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l 202 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASI 202 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECCCCCCGGG
T ss_pred hccchhhhccCCCCCEEECcCCCcCcchHhh
Confidence 666777777766666666543
No 27
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.50 E-value=3.3e-07 Score=74.00 Aligned_cols=64 Identities=23% Similarity=0.261 Sum_probs=57.9
Q ss_pred CCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcccccccc
Q 036903 247 TNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 247 ~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
++|+.|+|++|.+ ..+ |..+..++ +|++|+|++|.+..+|..+ . +.+|++|+|++|+++.+|.+
T Consensus 30 ~~l~~L~L~~N~i---------~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 96 (170)
T 3g39_A 30 TTTQVLYLYDNQI---------TKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96 (170)
T ss_dssp TTCSEEECCSSCC---------CCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEcCCCcC---------CccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHH
Confidence 7899999999988 455 67799999 9999999999999999875 6 99999999999999999875
No 28
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.49 E-value=3.9e-07 Score=78.27 Aligned_cols=87 Identities=23% Similarity=0.291 Sum_probs=61.0
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTNL- 299 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~i- 299 (323)
.++.+.+..+.+ ..+.+..|.++++|++|++++|.+ ..+| ..+..++ +|++|+|++|.+..+|...
T Consensus 60 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~ 127 (251)
T 3m19_A 60 KLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQL---------ASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVF 127 (251)
T ss_dssp TCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred cCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcc---------cccChhHhcccC-CCCEEEcCCCcCCCcChhHh
Confidence 445544443332 234455677778888888887776 3444 4567787 8888888888888888764
Q ss_pred C-CCCceEEEcCCCcccccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+ +.+|++|+|++|+++.+|.+
T Consensus 128 ~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 128 DRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCCcccEEECcCCcCCccCHH
Confidence 5 88888888888888888763
No 29
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.49 E-value=1.4e-07 Score=90.90 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=31.3
Q ss_pred hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccc
Q 036903 243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELL 317 (323)
Q Consensus 243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~l 317 (323)
|.++++|+.|+|++|.+ ..+|..++.++ +|++|+|++|.++.+| .++ |++|++|+|++|.++.+
T Consensus 459 ~~~l~~L~~L~Ls~N~l---------~~lp~~~~~l~-~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRL---------RALPPALAALR-CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp GGGGTTCCEEECCSSCC---------CCCCGGGGGCT-TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSS
T ss_pred ccccccCcEeecCcccc---------cccchhhhcCC-CCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCC
Confidence 45555555555555554 34444444444 4444444444444444 333 44444444444444444
No 30
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.48 E-value=1.1e-07 Score=74.76 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=68.5
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC-CCCCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT-LPTNL 299 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~-LP~~i 299 (323)
..++.+.+..+.+... ..+..+..+++|+.|++++|.+ ..+ ..++.++ +|++|++++|.+.. +|..+
T Consensus 17 ~~l~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l---------~~~-~~~~~l~-~L~~L~Ls~n~i~~~~~~~~ 84 (149)
T 2je0_A 17 SDVKELVLDNSRSNEG-KLEGLTDEFEELEFLSTINVGL---------TSI-ANLPKLN-KLKKLELSDNRVSGGLEVLA 84 (149)
T ss_dssp GGCSEEECTTCBCBTT-BCCSCCTTCTTCCEEECTTSCC---------CCC-TTCCCCT-TCCEEECCSSCCCSCTHHHH
T ss_pred ccCeEEEccCCcCChh-HHHHHHhhcCCCcEEECcCCCC---------CCc-hhhhcCC-CCCEEECCCCcccchHHHHh
Confidence 4566666655544311 2334678999999999999987 344 6788999 99999999999998 78777
Q ss_pred C-CCCceEEEcCCCcccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP 318 (323)
+ +++|++|++++|.++.+|
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~ 104 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLS 104 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHH
T ss_pred hhCCCCCEEECCCCcCCChH
Confidence 7 999999999999998875
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.48 E-value=1.5e-07 Score=91.28 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=33.4
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~ 315 (323)
+.+|.++++|++|+|++|.+ ..+|. .+..|+ +|++|+|++|++..+|.. ++ |++|++|++++|.++
T Consensus 93 ~~~f~~L~~L~~L~Ls~N~l---------~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 93 DGAYQSLSHLSTLILTGNPI---------QSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCC---------CEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred hhHhcCCCCCCEEEccCCcC---------CCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence 34445555555555555544 33332 245555 555555555555555543 34 555555555555554
No 32
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.46 E-value=4.3e-07 Score=79.92 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=63.4
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTNL- 299 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~i- 299 (323)
.++.+.+..+.+ ..+.+..|.++++|+.|+|++|.+ ..+|.. +..++ +|++|+|++|.++.+|..+
T Consensus 101 ~L~~L~l~~N~l--~~l~~~~~~~l~~L~~L~L~~N~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~ 168 (290)
T 1p9a_G 101 ALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNEL---------KTLPPGLLTPTP-KLEKLSLANNNLTELPAGLL 168 (290)
T ss_dssp TCCEEECCSSCC--CCCCSSTTTTCTTCCEEECTTSCC---------CCCCTTTTTTCT-TCCEEECTTSCCSCCCTTTT
T ss_pred CCCEEECCCCcC--cccCHHHHcCCCCCCEEECCCCCC---------CccChhhccccc-CCCEEECCCCcCCccCHHHh
Confidence 444444443333 234456678888888888888876 445443 56787 8888888888888888875
Q ss_pred C-CCCceEEEcCCCccccccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP~~i 321 (323)
. +.+|++|++++|.++.+|.++
T Consensus 169 ~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 169 NGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCcCCCCEEECCCCcCCccChhh
Confidence 5 888888888888888888764
No 33
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=2.6e-07 Score=89.01 Aligned_cols=71 Identities=23% Similarity=0.216 Sum_probs=64.8
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC--CCCCC-CCCceEEEcCCCcccc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL--PTNLI-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L--P~~i~-L~~L~~L~l~~~~i~~ 316 (323)
+..|.++++|+.|+|++|.+ ..+| .++.++ +|++|+|++|.+..+ |..++ |++|++|+|++|.++.
T Consensus 479 p~~~~~l~~L~~L~Ls~N~l---------~~lp-~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNAL---------ENVD-GVANLP-RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CGGGGGCTTCCEEECCSSCC---------CCCG-GGTTCS-SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred chhhhcCCCCCEEECCCCCC---------CCCc-ccCCCC-CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 46889999999999999988 5678 899999 999999999999999 88898 9999999999999999
Q ss_pred ccccc
Q 036903 317 LWEEK 321 (323)
Q Consensus 317 lP~~i 321 (323)
+|..+
T Consensus 548 ~~~~~ 552 (567)
T 1dce_A 548 EEGIQ 552 (567)
T ss_dssp SSSCT
T ss_pred CccHH
Confidence 88754
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.44 E-value=2e-07 Score=83.56 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=72.9
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI 300 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~ 300 (323)
..++.+.+....+. . .+..+.++++|++|+|++|.+ ..+|..++.++ +|++|+|++|.+..+|..++
T Consensus 81 ~~l~~L~L~~n~l~--~-lp~~l~~l~~L~~L~L~~n~l---------~~lp~~~~~l~-~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLP--Q-FPDQAFRLSHLQHMTIDAAGL---------MELPDTMQQFA-GLETLTLARNPLRALPASIA 147 (328)
T ss_dssp TTCCEEEEESSCCS--S-CCSCGGGGTTCSEEEEESSCC---------CCCCSCGGGGT-TCSEEEEESCCCCCCCGGGG
T ss_pred cceeEEEccCCCch--h-cChhhhhCCCCCEEECCCCCc---------cchhHHHhccC-CCCEEECCCCccccCcHHHh
Confidence 45666666655543 2 344567799999999999987 58999999999 99999999999999999998
Q ss_pred -CCCceEEEcCCC-ccccccccc
Q 036903 301 -TDKLVVLNLPCS-NVELLWEEK 321 (323)
Q Consensus 301 -L~~L~~L~l~~~-~i~~lP~~i 321 (323)
+.+|++|++++| .+..+|..+
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCS
T ss_pred cCcCCCEEECCCCCCccccChhH
Confidence 999999999997 567888764
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.42 E-value=1.9e-07 Score=83.01 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=48.1
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc-c
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE-L 316 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~-~ 316 (323)
+..|.++++|++|++++|.+ ...+|..+..++ +|++|++++|.+. .+|..++ +++|++|++++|.+. .
T Consensus 94 p~~l~~l~~L~~L~Ls~n~l--------~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 164 (313)
T 1ogq_A 94 PPAIAKLTQLHYLYITHTNV--------SGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164 (313)
T ss_dssp CGGGGGCTTCSEEEEEEECC--------EEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred ChhHhcCCCCCEEECcCCee--------CCcCCHHHhCCC-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc
Confidence 44556666666666666655 135666677777 7777777777666 6666676 777777777777766 6
Q ss_pred ccccc
Q 036903 317 LWEEK 321 (323)
Q Consensus 317 lP~~i 321 (323)
+|..+
T Consensus 165 ~p~~l 169 (313)
T 1ogq_A 165 IPDSY 169 (313)
T ss_dssp CCGGG
T ss_pred CCHHH
Confidence 66543
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.42 E-value=5.6e-07 Score=79.18 Aligned_cols=68 Identities=24% Similarity=0.125 Sum_probs=56.2
Q ss_pred hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccccccccc
Q 036903 244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP~~i 321 (323)
..+++|++|++++|.+ ..+|..+..++ +|++|++++|.++.+|.. ++ +.+|++|++++|.++.+|.++
T Consensus 74 ~~l~~L~~L~Ls~N~l---------~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 143 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQL---------QSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143 (290)
T ss_dssp SCCTTCCEEECCSSCC---------SSCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCCcCCEEECCCCcC---------CcCchhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence 5677777788877776 57888888888 999999999999998854 66 999999999999998888753
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.41 E-value=7.8e-07 Score=77.23 Aligned_cols=73 Identities=25% Similarity=0.337 Sum_probs=47.6
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i 314 (323)
+.+..|.++++|+.|++++|.+ ..+|.. +..++ +|++|++++|.+..+|.. +. +++|++|++++|.+
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGYNEL---------QSLPKGVFDKLT-SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred eCHHHhCcCcCCCEEECCCCcC---------CccCHhHccCCc-ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 3344566667777777777665 344443 56666 777777777777777664 44 77777777777777
Q ss_pred cccccc
Q 036903 315 ELLWEE 320 (323)
Q Consensus 315 ~~lP~~ 320 (323)
+.+|.+
T Consensus 194 ~~~~~~ 199 (270)
T 2o6q_A 194 KRVPEG 199 (270)
T ss_dssp SCCCTT
T ss_pred CcCCHH
Confidence 766653
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.41 E-value=6.9e-07 Score=79.82 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=62.3
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
+.+..|.++++|+.|++++|.+ ..+ +..+..++ +|++|++++|.+..+|..+. +++|++|++++|.++
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSI---------SAVDNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCC---------CEECTTTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred cCHHHhcCCCCCCEEECCCCcC---------ceeChhhccCCC-CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence 4456788999999999999987 334 45788888 99999999999999999997 999999999999999
Q ss_pred ccccc
Q 036903 316 LLWEE 320 (323)
Q Consensus 316 ~lP~~ 320 (323)
.+|.+
T Consensus 277 ~~~~~ 281 (330)
T 1xku_A 277 AIGSN 281 (330)
T ss_dssp CCCTT
T ss_pred ccChh
Confidence 88764
No 39
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.40 E-value=4.8e-07 Score=82.14 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=37.7
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC----C-CCCceEEEcCCCcc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL----I-TDKLVVLNLPCSNV 314 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i----~-L~~L~~L~l~~~~i 314 (323)
...|.++++|++|+|++|.+. ...|..+..++ +|++|+|++|.+..+|..+ . +.+|++|+|++|++
T Consensus 105 ~~~~~~l~~L~~L~L~~N~i~--------~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNHIV--------VVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp TTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCT-TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred HHHhCCCcCCCEEECCCCccc--------EECHHHhCCcc-cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 334455555555555555441 12244555555 6666666666666666543 3 56666666666666
Q ss_pred cccc
Q 036903 315 ELLW 318 (323)
Q Consensus 315 ~~lP 318 (323)
+.+|
T Consensus 176 ~~l~ 179 (361)
T 2xot_A 176 KKLP 179 (361)
T ss_dssp CCCC
T ss_pred CccC
Confidence 6555
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.37 E-value=5.9e-07 Score=82.19 Aligned_cols=72 Identities=24% Similarity=0.286 Sum_probs=52.7
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i 314 (323)
+.+..|.++++|+.|++++|.+ ..+ |..++.++ +|++|++++|.+..+|..+ + +++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 84 IDTYAFAYAHTIQKLYMGFNAI---------RYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cChhhccCCCCcCEEECCCCCC---------CcCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence 4445677777777777777766 333 45577787 8888888888888888775 5 88888888888887
Q ss_pred ccccc
Q 036903 315 ELLWE 319 (323)
Q Consensus 315 ~~lP~ 319 (323)
..+|.
T Consensus 154 ~~~~~ 158 (390)
T 3o6n_A 154 ERIED 158 (390)
T ss_dssp CBCCT
T ss_pred CccCh
Confidence 77654
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.37 E-value=1.1e-06 Score=76.47 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=49.1
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i 314 (323)
+.+..|.++++|++|++++|.+ ..+|. .++.++ +|++|++++|.+..+|... + +++|++|++++|.+
T Consensus 124 ~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 124 LPDGVFDKLTNLTYLNLAHNQL---------QSLPKGVFDKLT-NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCHHHhccCCCCCEEECCCCcc---------CccCHHHhccCc-cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 3444566677777777777765 34443 356677 7777777777777777654 5 77777777777777
Q ss_pred cccccc
Q 036903 315 ELLWEE 320 (323)
Q Consensus 315 ~~lP~~ 320 (323)
+.+|.+
T Consensus 194 ~~~~~~ 199 (272)
T 3rfs_A 194 KSVPDG 199 (272)
T ss_dssp SCCCTT
T ss_pred CccCHH
Confidence 766653
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.37 E-value=7.4e-07 Score=86.25 Aligned_cols=68 Identities=16% Similarity=0.083 Sum_probs=39.7
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCC-CCCC-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLP-TNLI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP-~~i~-L~~L~~L~l~~~~i 314 (323)
+.+..|.++++|++|+|++|.+ ..+ |..++.++ +|++|++++|.+..+| ..++ +++|++|++++|.+
T Consensus 71 i~~~~~~~l~~L~~L~Ls~n~l---------~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 140 (606)
T 3vq2_A 71 IEDKAWHGLHHLSNLILTGNPI---------QSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCC---------CCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCC
T ss_pred cCHHHhhchhhcCEeECCCCcc---------cccChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEEeCCCCcc
Confidence 3445566666666666666655 222 55566666 6666666666665555 3444 66666666666655
Q ss_pred c
Q 036903 315 E 315 (323)
Q Consensus 315 ~ 315 (323)
.
T Consensus 141 ~ 141 (606)
T 3vq2_A 141 H 141 (606)
T ss_dssp C
T ss_pred c
Confidence 4
No 43
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.36 E-value=1.1e-06 Score=76.22 Aligned_cols=87 Identities=23% Similarity=0.247 Sum_probs=60.3
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-C
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-L 299 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i 299 (323)
.++.+.+....+ ..+....|.++++|++|+++++.+ ..+|. .+..++ +|++|++++|.+..+|.. +
T Consensus 62 ~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~ 129 (270)
T 2o6q_A 62 KLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKL---------QALPIGVFDQLV-NLAELRLDRNQLKSLPPRVF 129 (270)
T ss_dssp TCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCC---------CCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTT
T ss_pred CCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcC---------CcCCHhHccccc-CCCEEECCCCccCeeCHHHh
Confidence 444444443332 234455567777788888877766 34443 457777 888888888888888765 4
Q ss_pred C-CCCceEEEcCCCcccccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+ +++|++|++++|.++.+|.+
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCcCCCEEECCCCcCCccCHh
Confidence 5 88888888888888888764
No 44
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.36 E-value=1.1e-06 Score=74.08 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=66.1
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CCCCC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PTNLI 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~~i~ 300 (323)
.++.+.+..+.+ ..+.+..|.++++|+.|+|++|.+. ...|..+..++ +|++|+|++|.+..+ |..+.
T Consensus 82 ~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 82 GVNEILLTSNRL--ENVQHKMFKGLESLKTLMLRSNRIT--------CVGNDSFIGLS-SVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp TCCEEECCSSCC--CCCCGGGGTTCSSCCEEECTTSCCC--------CBCTTSSTTCT-TCSEEECTTSCCCCBCTTTTT
T ss_pred CCCEEECCCCcc--CccCHhHhcCCcCCCEEECCCCcCC--------eECHhHcCCCc-cCCEEECCCCcCCEECHHHhc
Confidence 455554444433 3456677999999999999999872 33477899999 999999999999998 66777
Q ss_pred -CCCceEEEcCCCccc
Q 036903 301 -TDKLVVLNLPCSNVE 315 (323)
Q Consensus 301 -L~~L~~L~l~~~~i~ 315 (323)
+++|++|++++|.+.
T Consensus 151 ~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 151 TLHSLSTLNLLANPFN 166 (220)
T ss_dssp TCTTCCEEECCSCCEE
T ss_pred CCCCCCEEEecCcCCc
Confidence 999999999999764
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.36 E-value=7.8e-07 Score=86.10 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=71.3
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCC-CCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTL-PTN 298 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~L-P~~ 298 (323)
..++.+.+....+ -.+.+..|.++++|++|++++|.+ ..+ |..++.++ +|++|+|++|.+..+ |..
T Consensus 32 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l---------~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEI---------ETIEDKAWHGLH-HLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCC---------CEECTTTTTTCT-TCCEEECTTCCCCCCCTTS
T ss_pred CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcc---------cccCHHHhhchh-hcCEeECCCCcccccChhh
Confidence 3456655554433 345667899999999999999987 444 67899999 999999999999988 778
Q ss_pred CC-CCCceEEEcCCCccccccc
Q 036903 299 LI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 299 i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
++ +++|++|++++|.+..+|.
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLES 121 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSS
T ss_pred cCCcccCCEEEccCCccccccc
Confidence 87 9999999999999998883
No 46
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.35 E-value=8.8e-07 Score=72.94 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=65.8
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCC-CCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTL-PTN 298 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~L-P~~ 298 (323)
..++.+.+..+.+ ..+.+..|.++++|+.|+|++|.+ ..+ |..+..++ +|++|+|++|.+..+ |..
T Consensus 54 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~ 121 (192)
T 1w8a_A 54 PHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGENKI---------KEISNKMFLGLH-QLKTLNLYDNQISCVMPGS 121 (192)
T ss_dssp TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSCCC---------CEECSSSSTTCT-TCCEEECCSSCCCEECTTS
T ss_pred CCCCEEECCCCCC--CCcCHhHcCCcccCCEEECCCCcC---------CccCHHHhcCCC-CCCEEECCCCcCCeeCHHH
Confidence 3456665554443 345567899999999999999988 444 45588999 999999999999977 667
Q ss_pred CC-CCCceEEEcCCCccc
Q 036903 299 LI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 299 i~-L~~L~~L~l~~~~i~ 315 (323)
+. +.+|++|++++|.+.
T Consensus 122 ~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 122 FEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTTCCEEECTTCCBC
T ss_pred hhcCCCCCEEEeCCCCcc
Confidence 77 999999999999764
No 47
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.34 E-value=1.4e-06 Score=71.77 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=66.6
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCC-
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTN- 298 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~- 298 (323)
..++.+.+..+.+ ..+.+..|.++++|+.|+|++|.+ ..+ |..+..++ +|++|+|++|.+..+|..
T Consensus 54 ~~L~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~l---------~~i~~~~f~~l~-~L~~L~L~~N~l~~~~~~~ 121 (193)
T 2wfh_A 54 KHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRL---------RCIPPRTFDGLK-SLRLLSLHGNDISVVPEGA 121 (193)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CBCCTTTTTTCT-TCCEEECCSSCCCBCCTTT
T ss_pred cCCCEEECCCCcC--CEeCHhHccCCCCCCEEECCCCcc---------CEeCHHHhCCCC-CCCEEECCCCCCCeeChhh
Confidence 3556665554443 345667899999999999999987 444 45699999 999999999999999986
Q ss_pred CC-CCCceEEEcCCCcc
Q 036903 299 LI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 299 i~-L~~L~~L~l~~~~i 314 (323)
+. +.+|++|++.+|.+
T Consensus 122 ~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 122 FNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTTCTTCCEEECCSSCE
T ss_pred hhcCccccEEEeCCCCe
Confidence 56 99999999999865
No 48
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=5.3e-07 Score=81.18 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=54.1
Q ss_pred eeEEEEeec-CCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCC
Q 036903 222 VIAGIFLDL-SKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNL 299 (323)
Q Consensus 222 ~~~~l~~~~-~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i 299 (323)
.++.+.+.. +.+ -.+.+..|.++++|+.|+|++|.+ ..+ |..+..|+ +|++|+|++|.+..+|..+
T Consensus 32 ~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l---------~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 32 NLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGL---------RFVAPDAFHFTP-RLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp CCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCC---------CEECTTGGGSCS-CCCEEECCSSCCSCCCSTT
T ss_pred CeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCcc---------ceeCHHHhcCCc-CCCEEeCCCCccceeCHHH
Confidence 455554442 332 334556677888888888888776 333 44567777 8888888888888887765
Q ss_pred -CCCCceEEEcCCCccc
Q 036903 300 -ITDKLVVLNLPCSNVE 315 (323)
Q Consensus 300 -~L~~L~~L~l~~~~i~ 315 (323)
....|+.|+|.+|.+.
T Consensus 100 ~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 100 VQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TCSCCCCEEECCSSCCC
T ss_pred cccCCceEEEeeCCCcc
Confidence 3333888888777654
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.33 E-value=8.2e-07 Score=85.36 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=62.6
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI 300 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~ 300 (323)
..++.+.+..+.+ ..+.+..|.++++|++|+|++|.+. ...|+.+..++ +|++|+|++|.+..+|.. .
T Consensus 52 ~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIR--------SLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-P 119 (562)
T ss_dssp TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCC--------EECTTTTTTCT-TCCEEECTTSCCCEECSC-C
T ss_pred CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCC--------cCCHHHhCCCC-CCCEEECCCCcCCccCcc-c
Confidence 3455555544433 3345567888888888888888761 23366788888 888888888888888887 7
Q ss_pred CCCceEEEcCCCcccccc
Q 036903 301 TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~lP 318 (323)
+.+|++|++++|.++.+|
T Consensus 120 l~~L~~L~Ls~N~l~~l~ 137 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLP 137 (562)
T ss_dssp CTTCSEEECCSSCCSBCC
T ss_pred cccCCEEECCCCCccccC
Confidence 888888888888887765
No 50
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.32 E-value=9.7e-07 Score=80.10 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=71.7
Q ss_pred cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCC-CC
Q 036903 220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTL-PT 297 (323)
Q Consensus 220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~L-P~ 297 (323)
...++.+.+..+.+ -.+.+..|.++++|+.|+|++|.+ ..+|. .+..++ +|++|+|++|.+..+ |.
T Consensus 63 l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~ 130 (361)
T 2xot_A 63 LTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHL---------HTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRN 130 (361)
T ss_dssp CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCC---------CEECTTTTTTCT-TCCEEECCSSCCCEECTT
T ss_pred ccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCcC---------CcCCHHHhCCCc-CCCEEECCCCcccEECHH
Confidence 34555655544433 345567899999999999999987 45544 688999 999999999999988 55
Q ss_pred CCC-CCCceEEEcCCCccccccccc
Q 036903 298 NLI-TDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 298 ~i~-L~~L~~L~l~~~~i~~lP~~i 321 (323)
.+. +.+|++|+|++|.++.+|.++
T Consensus 131 ~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 131 AFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred HhCCcccCCEEECCCCcCCeeCHHH
Confidence 677 999999999999999998764
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.31 E-value=3.3e-07 Score=81.54 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=52.0
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CC-CceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TD-KLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~-~L~~L~l~~~~i 314 (323)
..+..|.++++|++|++++|.+ ...+|..+..++ +|++|++++|.+. .+|..++ +. +|++|++++|.+
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l--------~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNAL--------SGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEE--------ESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred cCCHHHhCCCCCCEEeCCCCcc--------CCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 3455677777777777777765 125677777777 7777777777776 7777775 66 777777777776
Q ss_pred c-ccccc
Q 036903 315 E-LLWEE 320 (323)
Q Consensus 315 ~-~lP~~ 320 (323)
. .+|..
T Consensus 187 ~~~~~~~ 193 (313)
T 1ogq_A 187 TGKIPPT 193 (313)
T ss_dssp EEECCGG
T ss_pred eccCChH
Confidence 6 55554
No 52
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.31 E-value=1.2e-06 Score=70.94 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=67.8
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTNL 299 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~i 299 (323)
..++.+.+..+.+ ..+.+..|..+++|+.|++++|.+ ..+|.. +..++ +|++|++++|.+..+|..+
T Consensus 52 ~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l---------~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~ 119 (177)
T 2o6r_A 52 TQLTKLSLSQNQI--QSLPDGVFDKLTKLTILYLHENKL---------QSLPNGVFDKLT-QLKELALDTNQLKSVPDGI 119 (177)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCSCCCTTT
T ss_pred ccccEEECCCCcc--eEeChhHccCCCccCEEECCCCCc---------cccCHHHhhCCc-ccCEEECcCCcceEeCHHH
Confidence 4566665554443 245566789999999999999987 455554 68899 9999999999999999985
Q ss_pred -C-CCCceEEEcCCCccccc
Q 036903 300 -I-TDKLVVLNLPCSNVELL 317 (323)
Q Consensus 300 -~-L~~L~~L~l~~~~i~~l 317 (323)
. +++|++|++++|.+.--
T Consensus 120 ~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 120 FDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTCTTCCEEECCSSCBCCC
T ss_pred hcCCcccCEEEecCCCeecc
Confidence 6 99999999999986543
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.31 E-value=1.3e-06 Score=81.60 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=46.0
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~ 315 (323)
+.+..|.++++|+.|+|++|.+. ...|..+..++ +|++|+|++|.+..+|.. ++ +.+|++|+|++|.++
T Consensus 90 ~~~~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 90 IQADTFRHLHHLEVLQLGRNSIR--------QIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred ECHHHcCCCCCCCEEECCCCccC--------CcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence 44556667777777777776651 22335566666 677777776666666655 44 667777777666666
Q ss_pred cccc
Q 036903 316 LLWE 319 (323)
Q Consensus 316 ~lP~ 319 (323)
.+|.
T Consensus 161 ~~~~ 164 (452)
T 3zyi_A 161 SIPS 164 (452)
T ss_dssp EECT
T ss_pred eeCH
Confidence 6654
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.31 E-value=6.2e-07 Score=85.20 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=35.1
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVEL 316 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~ 316 (323)
+..|.++++|++|+|++|.+. ...|..++.++ +|++|+|++|.++.+|.. .+.+|++|++++|.++.
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNRIQ--------YLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCC--------EEEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSS
T ss_pred hhhccccccccEEecCCCccC--------CcChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEeccCCcccc
Confidence 344555555555555555541 12244555555 555555555555555555 55555555555555543
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.30 E-value=2e-06 Score=74.70 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=41.8
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i 314 (323)
+.+..|.++++|+.|++++|.+ ..+|. .++.++ +|++|++++|.+..+|.. ++ +++|++|++++|.+
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQL---------QSLPEGVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCHHHhccCccCCEEECCCCCc---------CccCHHHhcCCc-cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 3444566667777777776665 33333 346666 777777777766666655 34 67777777766654
Q ss_pred c
Q 036903 315 E 315 (323)
Q Consensus 315 ~ 315 (323)
.
T Consensus 218 ~ 218 (272)
T 3rfs_A 218 D 218 (272)
T ss_dssp C
T ss_pred c
Confidence 3
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.29 E-value=2.1e-06 Score=78.56 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=46.6
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i 314 (323)
+.+..|.++++|+.|++++|.+ ..+|.. ++.++ +|++|++++|.+..+|.. ++ +++|++|++++|.+
T Consensus 108 ~~~~~~~~l~~L~~L~L~~n~l---------~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 108 LPPHVFQNVPLLTVLVLERNDL---------SSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred CCHHHhcCCCCCCEEECCCCcc---------CcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 3445566777777777777765 455555 36666 777777777777666543 55 77777777777766
Q ss_pred cccc
Q 036903 315 ELLW 318 (323)
Q Consensus 315 ~~lP 318 (323)
+.+|
T Consensus 178 ~~~~ 181 (390)
T 3o6n_A 178 THVD 181 (390)
T ss_dssp SBCC
T ss_pred Cccc
Confidence 6554
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.29 E-value=8.3e-07 Score=80.13 Aligned_cols=68 Identities=22% Similarity=0.321 Sum_probs=35.6
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCC--CCC-CCCceEEEcCCC-cc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPT--NLI-TDKLVVLNLPCS-NV 314 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~--~i~-L~~L~~L~l~~~-~i 314 (323)
+..|.++++|++|++++|.+ ..+|.. ++.++ +|++|++++|.+..+|. .++ +++|++|++++| .+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYL---------SNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCC---------SSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred HhhcCCCCCCCEEECCCCcC---------CcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence 34455555555555555544 334333 45555 55555555555555555 344 555666655555 34
Q ss_pred ccc
Q 036903 315 ELL 317 (323)
Q Consensus 315 ~~l 317 (323)
..+
T Consensus 163 ~~~ 165 (353)
T 2z80_A 163 TKI 165 (353)
T ss_dssp CEE
T ss_pred ccc
Confidence 444
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.29 E-value=1.4e-06 Score=77.84 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=30.7
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccc
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~ 315 (323)
..|.++++|+.|++++|.+ ..+|..+. + +|++|++++|.+..+|.. ++ +++|++|++++|.++
T Consensus 96 ~~~~~l~~L~~L~L~~n~l---------~~l~~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKNHL---------VEIPPNLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp GGSTTCTTCCEEECCSSCC---------CSCCSSCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred hHhhCcCCCCEEECCCCcC---------CccCcccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 3444444444444444443 33444433 3 555555555555555443 33 555555555555554
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.29 E-value=1.2e-06 Score=84.81 Aligned_cols=72 Identities=24% Similarity=0.286 Sum_probs=53.3
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i 314 (323)
+.+..|..+++|++|+|++|.+ ..+ |..++.++ +|++|+|++|.+..+|..+ + +.+|++|++++|.+
T Consensus 90 ~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 90 IDTYAFAYAHTIQKLYMGFNAI---------RYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CChHHhcCCCCCCEEECCCCcC---------CCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 4445677777788888877776 334 34567888 8888888888888888775 5 88888888888887
Q ss_pred ccccc
Q 036903 315 ELLWE 319 (323)
Q Consensus 315 ~~lP~ 319 (323)
..+|.
T Consensus 160 ~~~~~ 164 (597)
T 3oja_B 160 ERIED 164 (597)
T ss_dssp CBCCT
T ss_pred CCCCh
Confidence 77664
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.28 E-value=7.2e-07 Score=79.82 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=51.5
Q ss_pred CchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccc
Q 036903 239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~ 316 (323)
....|.++++|+.|++++|.+ ..+ |..+..++ +|++|++++|.+..+|..+. +++|++|++++|.++.
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQI---------RMIENGSLSFLP-TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCC---------CCCCTTGGGGCT-TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CHHHhcCCCCCCEEECCCCcC---------CcCChhHhhCCC-CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCc
Confidence 345667777788888877766 333 34577777 78888888877778887776 7888888888887777
Q ss_pred ccc
Q 036903 317 LWE 319 (323)
Q Consensus 317 lP~ 319 (323)
+|.
T Consensus 279 ~~~ 281 (332)
T 2ft3_A 279 VGV 281 (332)
T ss_dssp CCT
T ss_pred cCh
Confidence 765
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.28 E-value=2.3e-06 Score=74.69 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=61.7
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCC-CCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCC-CC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPN-RRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLP-TN 298 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~-~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP-~~ 298 (323)
.++.+.+....+ ..+.+..|.++++|+.|++++|. + ..+ |..+..++ +|++|++++|.+..+| ..
T Consensus 57 ~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~ 124 (285)
T 1ozn_A 57 NLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQL---------RSVDPATFHGLG-RLHTLHLDRCGLQELGPGL 124 (285)
T ss_dssp TCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTC---------CCCCTTTTTTCT-TCCEEECTTSCCCCCCTTT
T ss_pred CCCEEECCCCcc--ceeCHhhcCCccCCCEEeCCCCCCc---------cccCHHHhcCCc-CCCEEECCCCcCCEECHhH
Confidence 444444443322 23445667788888888888876 4 334 66788888 8999999988888774 44
Q ss_pred CC-CCCceEEEcCCCcccccccc
Q 036903 299 LI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 299 i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
++ +++|++|++++|.++.+|.+
T Consensus 125 ~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTT
T ss_pred hhCCcCCCEEECCCCcccccCHh
Confidence 66 88999999999888887754
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.27 E-value=2.5e-06 Score=74.49 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=69.7
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-C
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-L 299 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i 299 (323)
..++.+.+..+.. ...+.+..|.++++|+.|++++|.+. ...|..+..++ +|++|++++|.+..+|.. +
T Consensus 80 ~~L~~L~l~~n~~-l~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~ 149 (285)
T 1ozn_A 80 ALLEQLDLSDNAQ-LRSVDPATFHGLGRLHTLHLDRCGLQ--------ELGPGLFRGLA-ALQYLYLQDNALQALPDDTF 149 (285)
T ss_dssp TTCCEEECCSCTT-CCCCCTTTTTTCTTCCEEECTTSCCC--------CCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred cCCCEEeCCCCCC-ccccCHHHhcCCcCCCEEECCCCcCC--------EECHhHhhCCc-CCCEEECCCCcccccCHhHh
Confidence 4456655543320 23344677899999999999999872 23366788899 999999999999999876 6
Q ss_pred C-CCCceEEEcCCCcccccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+ +++|++|++++|.++.+|.+
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTT
T ss_pred ccCCCccEEECCCCcccccCHH
Confidence 6 99999999999999988864
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.27 E-value=1.4e-06 Score=84.42 Aligned_cols=72 Identities=22% Similarity=0.283 Sum_probs=43.0
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i 314 (323)
+.+.+|.++++|++|+|++|.+ ..+|. .+..|+ +|++|+|++|+++.+|.. ++ |.+|++|++++|++
T Consensus 67 l~~~~f~~l~~L~~L~Ls~N~i---------~~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 67 LGSYSFFSFPELQVLDLSRCEI---------QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCC---------CEECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred CCHHHHhCCCCCCEEECCCCcC---------CCcChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 4455566666666666666655 33433 456666 666666666666666654 34 66666666666666
Q ss_pred ccccc
Q 036903 315 ELLWE 319 (323)
Q Consensus 315 ~~lP~ 319 (323)
+.+|.
T Consensus 137 ~~l~~ 141 (635)
T 4g8a_A 137 ASLEN 141 (635)
T ss_dssp CCSTT
T ss_pred CCCCh
Confidence 66654
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.26 E-value=1.5e-06 Score=75.61 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=42.1
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCC--CCCCCC-CCCceEEEcCCCccc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRT--LPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~--LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
...|.++++|+.|+++++.+ ..++. .++.++ +|++|++++|.+.. +|..++ +++|++|++++|.++
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNL---------ASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCC---------CCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhcCCccccEEECCCCCc---------cccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 34455556666666655554 23332 466666 77777777776665 566665 777777777777666
Q ss_pred ccc
Q 036903 316 LLW 318 (323)
Q Consensus 316 ~lP 318 (323)
.+|
T Consensus 163 ~~~ 165 (276)
T 2z62_A 163 SIY 165 (276)
T ss_dssp EEC
T ss_pred cCC
Confidence 554
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.24 E-value=2.7e-06 Score=73.89 Aligned_cols=88 Identities=17% Similarity=0.078 Sum_probs=63.4
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC-CCC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT-NLI 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~-~i~ 300 (323)
.++.+.+..+.+ ..+....|.++++|+.|++++|.+. ...|..+..++ +|++|++++|.+..+|. .++
T Consensus 53 ~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~ 121 (276)
T 2z62_A 53 ELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQ--------SLALGAFSGLS-SLQKLVAVETNLASLENFPIG 121 (276)
T ss_dssp TCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCC--------EECTTTTTTCT-TCCEEECTTSCCCCSTTCCCT
T ss_pred CCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccC--------ccChhhhcCCc-cccEEECCCCCccccCchhcc
Confidence 445554443332 2345567788888888888888761 23346788888 99999999998888877 466
Q ss_pred -CCCceEEEcCCCcccc--cccc
Q 036903 301 -TDKLVVLNLPCSNVEL--LWEE 320 (323)
Q Consensus 301 -L~~L~~L~l~~~~i~~--lP~~ 320 (323)
+++|++|++++|.++. +|+.
T Consensus 122 ~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 122 HLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGG
T ss_pred cCCCCCEEECcCCccceecCchh
Confidence 9999999999998876 5654
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.24 E-value=2e-06 Score=80.13 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=34.5
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcccc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~ 316 (323)
...|.++++|+.|+|++|.+ ..+ +..+..++ +|++|+|++|.+..+|.. +. +.+|++|++++|.++.
T Consensus 81 ~~~~~~l~~L~~L~Ls~n~i---------~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 81 VNSFKHLRHLEILQLSRNHI---------RTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp TTTTSSCSSCCEEECCSSCC---------CEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred HHHhhCCCCCCEEECCCCcC---------CccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence 34455555555555555544 222 23444455 555555555555555442 33 5555555555555544
Q ss_pred ccc
Q 036903 317 LWE 319 (323)
Q Consensus 317 lP~ 319 (323)
+|.
T Consensus 151 ~~~ 153 (440)
T 3zyj_A 151 IPS 153 (440)
T ss_dssp ECT
T ss_pred cCH
Confidence 443
No 67
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.23 E-value=2.3e-06 Score=80.39 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=43.8
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~ 315 (323)
+.+..|.++++|++|+|++|.+. ...|..++.++ +|++|+|++|.+..+|.. ++ +.+|++|++++|.+.
T Consensus 47 ~~~~~~~~l~~L~~L~L~~n~i~--------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 117 (477)
T 2id5_A 47 LNQDEFASFPHLEELELNENIVS--------AVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV 117 (477)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCC--------EECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred ECHhHccCCCCCCEEECCCCccC--------EeChhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence 34455666667777777666551 22355666666 666666666666666654 34 666666666666655
Q ss_pred ccc
Q 036903 316 LLW 318 (323)
Q Consensus 316 ~lP 318 (323)
.++
T Consensus 118 ~~~ 120 (477)
T 2id5_A 118 ILL 120 (477)
T ss_dssp EEC
T ss_pred cCC
Confidence 543
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.23 E-value=3e-06 Score=75.65 Aligned_cols=72 Identities=18% Similarity=0.196 Sum_probs=48.6
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCccccc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELL 317 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~l 317 (323)
+....|.++++|++|++++|.+. ...|..++.++ +|++|++++|.++.+|..+. ++|++|++++|.+..+
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~ 136 (330)
T 1xku_A 67 IKDGDFKNLKNLHTLILINNKIS--------KISPGAFAPLV-KLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKV 136 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSCCC--------CBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBB
T ss_pred eChhhhccCCCCCEEECCCCcCC--------eeCHHHhcCCC-CCCEEECCCCcCCccChhhc-ccccEEECCCCccccc
Confidence 44556777788888888777761 22366777777 78888887777777776654 5666666666666555
Q ss_pred cc
Q 036903 318 WE 319 (323)
Q Consensus 318 P~ 319 (323)
|.
T Consensus 137 ~~ 138 (330)
T 1xku_A 137 RK 138 (330)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 69
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.22 E-value=7e-07 Score=73.75 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=19.2
Q ss_pred CCccCcCCCceeEEecCCC-CCCCCCCCC-CCCceEEEcCCCccccc
Q 036903 273 QGLDYLPEELTYLHWHGYP-LRTLPTNLI-TDKLVVLNLPCSNVELL 317 (323)
Q Consensus 273 ~~i~~L~~~Lr~L~l~~~~-i~~LP~~i~-L~~L~~L~l~~~~i~~l 317 (323)
..+..++ +|++|++++|. +..+| .+. +++|++|++++|.++.+
T Consensus 130 ~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 130 TKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp HHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred HHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence 3344444 44444444443 44444 233 44444444444444433
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.22 E-value=2.4e-06 Score=81.86 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=20.4
Q ss_pred ccCcCCCceeEEecCCCCCC--CCCCCC-CCCceEEEcCCCccccc
Q 036903 275 LDYLPEELTYLHWHGYPLRT--LPTNLI-TDKLVVLNLPCSNVELL 317 (323)
Q Consensus 275 i~~L~~~Lr~L~l~~~~i~~--LP~~i~-L~~L~~L~l~~~~i~~l 317 (323)
++.++ +|++|++++|.+.. +|..++ +++|++|++++|.+..+
T Consensus 120 ~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 120 IGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred ccccc-cccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 44444 55555555554443 344444 55555555555544443
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.22 E-value=3.1e-06 Score=82.03 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=58.8
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCC-CC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPT-NL 299 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~-~i 299 (323)
.++.+.+..+.+ ..+.+..|.++++|++|+|++|.+ ..+|.. ++.++ +|++|+|++|.+..+|. .+
T Consensus 100 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l---------~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 100 TIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDL---------SSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTT
T ss_pred CCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCC---------CCCCHHHhccCC-CCCEEEeeCCcCCCCChhhh
Confidence 444544443332 234556677888888888888876 466665 47777 88888888888877765 46
Q ss_pred C-CCCceEEEcCCCcccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP 318 (323)
+ +++|++|++++|.+..+|
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~ 187 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVD 187 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCC
T ss_pred hcCCcCcEEECcCCCCCCcC
Confidence 6 888888888888777665
No 72
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.21 E-value=2e-06 Score=80.16 Aligned_cols=65 Identities=26% Similarity=0.313 Sum_probs=31.2
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcc
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNV 314 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i 314 (323)
..|.++++|++|++++|.+. ...|..+..++ +|++|++++|.++.+|..+ + +++|++|++++|.+
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIR--------ALGDQSFLGLP-NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCC--------EECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hHhcCcccCCEEECCCCccc--------ccChhhccccc-cccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 33444444444444444431 12244455555 5555555555555555433 3 55555555555544
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.18 E-value=2.8e-06 Score=81.45 Aligned_cols=88 Identities=18% Similarity=0.084 Sum_probs=62.5
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCC-CC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPT-NL 299 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~-~i 299 (323)
.++.+.+..+.+ ..+.+..|.++++|++|++++|.+ ..+ |..++.++ +|++|++++|.+..+|. .+
T Consensus 53 ~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~ 120 (570)
T 2z63_A 53 ELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPI---------QSLALGAFSGLS-SLQKLVAVETNLASLENFPI 120 (570)
T ss_dssp SCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCC---------CEECTTTTTTCT-TCCEEECTTSCCCCSTTCSC
T ss_pred CceEEECCCCcC--CccCcccccCchhCCEEeCcCCcC---------CccCHhhhcCcc-ccccccccccccccCCCccc
Confidence 444444433322 234556677888888888888776 344 46788888 88899998888888887 46
Q ss_pred C-CCCceEEEcCCCcccc--ccccc
Q 036903 300 I-TDKLVVLNLPCSNVEL--LWEEK 321 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~--lP~~i 321 (323)
+ +++|++|++++|.++. +|+++
T Consensus 121 ~~l~~L~~L~L~~n~l~~~~lp~~~ 145 (570)
T 2z63_A 121 GHLKTLKELNVAHNLIQSFKLPEYF 145 (570)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred cccccccEEecCCCccceecChhhh
Confidence 6 8899999999888875 57654
No 74
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.17 E-value=3e-06 Score=82.75 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=54.7
Q ss_pred hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecC------CC-CCCCCCCCC-CCCceEEEcCCCccc
Q 036903 244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHG------YP-LRTLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~------~~-i~~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
..+++|+.|+|++|.+ ..+|..+..++ +|++|+|++ |. ...+|..++ +++|++|++++|.+.
T Consensus 510 ~~l~~L~~L~Ls~N~l---------~~ip~~~~~l~-~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSF---------SKFPTQPLNSS-TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp TTCTTCCEEECCSSCC---------SSCCCGGGGCS-SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred ccCCCcCEEECCCCCC---------CCcChhhhcCC-CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 3888888888888877 45888888888 899998854 43 457888887 889999999999888
Q ss_pred cccccc
Q 036903 316 LLWEEK 321 (323)
Q Consensus 316 ~lP~~i 321 (323)
.+|..+
T Consensus 580 ~ip~~~ 585 (636)
T 4eco_A 580 KVNEKI 585 (636)
T ss_dssp BCCSCC
T ss_pred ccCHhH
Confidence 888754
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.17 E-value=1.9e-06 Score=76.65 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=31.3
Q ss_pred hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903 244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
..+++|++|++++|.+ ..+|... .++ +|++|++++|.+..+|..+. +++|++|++++|.++.+|.
T Consensus 166 ~~l~~L~~L~L~~N~l---------~~~~~~~-~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFI---------YDVKGQV-VFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp GGTTTCCEEECTTSCC---------CEEECCC-CCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred hccCcCCEEECCCCcC---------ccccccc-ccc-cCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence 3455555555555554 2222222 244 55555555555555544444 5555555555555544444
No 76
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.17 E-value=2.5e-06 Score=75.23 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=47.3
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC-CCC-CCCceEEEcCCCccccc
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT-NLI-TDKLVVLNLPCSNVELL 317 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~-~i~-L~~L~~L~l~~~~i~~l 317 (323)
+..|..+++|+.|++++|.+. ...|..+..++ +|++|++++|.+..+|. .+. +.+|++|++++|.+...
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLE--------QLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCC--------EECTTTTTTCT-TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred hhHHhhCcCCCEEECCCCCcC--------CcCHHHhcCCC-CCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 445667777777777777651 22356677777 77777777777777766 345 77777888877776554
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.15 E-value=2.2e-06 Score=72.80 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=34.9
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCce---eEEecCC-CCCCCCCC-CC-CCCce-EEEcCCC
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELT---YLHWHGY-PLRTLPTN-LI-TDKLV-VLNLPCS 312 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr---~L~l~~~-~i~~LP~~-i~-L~~L~-~L~l~~~ 312 (323)
...|.++++|+.|++++|.+ ..+|. +..++ +|+ +|++++| .+..+|.. ++ +.+|+ +|++++|
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l---------~~lp~-~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGL---------KMFPD-LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp TTSEECCTTCCEEEEEEECC---------CSCCC-CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred HHHhCCCCCCCEEeCCCCCC---------ccccc-ccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 34455555566666655554 23443 33343 443 5555555 55555543 33 55555 5555555
Q ss_pred ccccccc
Q 036903 313 NVELLWE 319 (323)
Q Consensus 313 ~i~~lP~ 319 (323)
.++.+|.
T Consensus 167 ~l~~i~~ 173 (239)
T 2xwt_C 167 GFTSVQG 173 (239)
T ss_dssp CCCEECT
T ss_pred CCcccCH
Confidence 5555554
No 78
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.15 E-value=4e-06 Score=72.60 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=54.2
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI- 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~- 300 (323)
.++.+.+..+.+..+ .+ |.++++|+.|++++|.+ ..+|.... + +|++|++++|.+..+|. ++
T Consensus 64 ~L~~L~L~~N~i~~~--~~--l~~l~~L~~L~L~~N~l---------~~l~~~~~--~-~L~~L~L~~N~l~~~~~-l~~ 126 (263)
T 1xeu_A 64 NLKELHLSHNQISDL--SP--LKDLTKLEELSVNRNRL---------KNLNGIPS--A-CLSRLFLDNNELRDTDS-LIH 126 (263)
T ss_dssp TCCEEECCSSCCCCC--GG--GTTCSSCCEEECCSSCC---------SCCTTCCC--S-SCCEEECCSSCCSBSGG-GTT
T ss_pred CCCEEECCCCccCCC--hh--hccCCCCCEEECCCCcc---------CCcCcccc--C-cccEEEccCCccCCChh-hcC
Confidence 455554444433222 12 67778888888888776 44554333 5 88888888888888764 55
Q ss_pred CCCceEEEcCCCcccccc
Q 036903 301 TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~lP 318 (323)
+.+|++|++++|+++.+|
T Consensus 127 l~~L~~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIV 144 (263)
T ss_dssp CTTCCEEECTTSCCCBCG
T ss_pred cccccEEECCCCcCCCCh
Confidence 888899999888888776
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=3.4e-06 Score=85.04 Aligned_cols=86 Identities=14% Similarity=0.222 Sum_probs=52.8
Q ss_pred eeEEEEeecCCccccccCc-hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903 222 VIAGIFLDLSKIRDIHLGS-RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~-~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~ 300 (323)
.++.+.+..+.+. .++. ..|.++++|+.|+|++|.+ ..+| .++.++ +|++|+|++|.+..+|..+.
T Consensus 549 ~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l---------~~lp-~~~~L~-~L~~L~Ls~N~l~~lp~~l~ 615 (876)
T 4ecn_A 549 KIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKV---------RHLE-AFGTNV-KLTDLKLDYNQIEEIPEDFC 615 (876)
T ss_dssp TCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCC---------CBCC-CCCTTS-EESEEECCSSCCSCCCTTSC
T ss_pred CccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCc---------ccch-hhcCCC-cceEEECcCCccccchHHHh
Confidence 4555544444332 2222 2567777777777777765 3556 666666 67777776666666666665
Q ss_pred -CCC-ceEEEcCCCcccccccc
Q 036903 301 -TDK-LVVLNLPCSNVELLWEE 320 (323)
Q Consensus 301 -L~~-L~~L~l~~~~i~~lP~~ 320 (323)
+.+ |++|++++|.+..+|..
T Consensus 616 ~l~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 616 AFTDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp EECTTCCEEECCSSCCCSCCSC
T ss_pred hccccCCEEECcCCCCCcCchh
Confidence 666 77777766666666653
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.15 E-value=2.9e-06 Score=75.23 Aligned_cols=90 Identities=18% Similarity=0.125 Sum_probs=51.0
Q ss_pred cceeEEEEeecCCcccc-ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCC
Q 036903 220 TDVIAGIFLDLSKIRDI-HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPT 297 (323)
Q Consensus 220 ~~~~~~l~~~~~~~~~l-~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~ 297 (323)
...++.+.+..+.+..+ .+....+.++++|+.|++++|.+. ...| ..+..++ +|++|++++|.++.+|.
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~~l~-~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR--------DAAGAPSCDWPS-QLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC--------SSCCCSCCCCCT-TCCEEECTTSCCSSCCS
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC--------cccchhhhhhcC-CCCEEECCCCccChhhh
Confidence 34555555544443322 122344556677777777777652 1111 2344455 67777777776666666
Q ss_pred CCCCCCceEEEcCCCccccccc
Q 036903 298 NLITDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 298 ~i~L~~L~~L~l~~~~i~~lP~ 319 (323)
.+. .+|++|++++|+++.+|.
T Consensus 271 ~~~-~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 271 GLP-AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp SCC-SEEEEEECCSSCCCSCCC
T ss_pred hcc-CCceEEECCCCCCCCChh
Confidence 665 667777777776666654
No 81
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.15 E-value=1.4e-06 Score=75.50 Aligned_cols=82 Identities=21% Similarity=0.110 Sum_probs=63.9
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLIT 301 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L 301 (323)
.++.+.+..+.+..+ +.+..+++|+.|++++|.+ ..+|. +..++ +|++|++++|.+..+|....
T Consensus 42 ~L~~L~l~~n~i~~l----~~l~~l~~L~~L~L~~N~i---------~~~~~-l~~l~-~L~~L~L~~N~l~~l~~~~~- 105 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSL----AGMQFFTNLKELHLSHNQI---------SDLSP-LKDLT-KLEELSVNRNRLKNLNGIPS- 105 (263)
T ss_dssp TCSEEECTTSCCCCC----TTGGGCTTCCEEECCSSCC---------CCCGG-GTTCS-SCCEEECCSSCCSCCTTCCC-
T ss_pred cCcEEECcCCCcccc----hHHhhCCCCCEEECCCCcc---------CCChh-hccCC-CCCEEECCCCccCCcCcccc-
Confidence 455555554444332 2578899999999999987 55665 88898 99999999999999987666
Q ss_pred CCceEEEcCCCccccccc
Q 036903 302 DKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 302 ~~L~~L~l~~~~i~~lP~ 319 (323)
.+|++|++++|.++.+|.
T Consensus 106 ~~L~~L~L~~N~l~~~~~ 123 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTDS 123 (263)
T ss_dssp SSCCEEECCSSCCSBSGG
T ss_pred CcccEEEccCCccCCChh
Confidence 899999999999888763
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.15 E-value=3.1e-06 Score=69.81 Aligned_cols=82 Identities=12% Similarity=0.017 Sum_probs=61.7
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCC-CCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPN-RRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL 299 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~-~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i 299 (323)
..++.+.+..+.+ .......|.++++|+.|++++|. + ..+| .+..++ +|++|++++|.+..+| .+
T Consensus 112 ~~L~~L~Ls~n~i--~~~~~~~l~~l~~L~~L~L~~n~~i---------~~~~-~l~~l~-~L~~L~l~~n~i~~~~-~l 177 (197)
T 4ezg_A 112 TSLTLLDISHSAH--DDSILTKINTLPKVNSIDLSYNGAI---------TDIM-PLKTLP-ELKSLNIQFDGVHDYR-GI 177 (197)
T ss_dssp TTCCEEECCSSBC--BGGGHHHHTTCSSCCEEECCSCTBC---------CCCG-GGGGCS-SCCEEECTTBCCCCCT-TG
T ss_pred CCCCEEEecCCcc--CcHhHHHHhhCCCCCEEEccCCCCc---------cccH-hhcCCC-CCCEEECCCCCCcChH-Hh
Confidence 3455555544433 22335678899999999999997 5 5566 688999 9999999999999998 66
Q ss_pred C-CCCceEEEcCCCcccc
Q 036903 300 I-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~ 316 (323)
. +++|++|++.+|.|..
T Consensus 178 ~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGCSSCCEEEECBC----
T ss_pred ccCCCCCEEEeeCcccCC
Confidence 6 9999999999998753
No 83
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.14 E-value=2.3e-06 Score=77.15 Aligned_cols=45 Identities=24% Similarity=0.184 Sum_probs=21.0
Q ss_pred CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccccccc
Q 036903 274 GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 274 ~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
.+..++ +|++|++++|.+..+|.. ++ +++|++|++++|.++.+|.
T Consensus 95 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 141 (353)
T 2z80_A 95 SFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 141 (353)
T ss_dssp TTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS
T ss_pred hcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc
Confidence 344444 444444444444444443 33 4444444444444444443
No 84
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.14 E-value=2.4e-06 Score=83.43 Aligned_cols=71 Identities=27% Similarity=0.367 Sum_probs=45.6
Q ss_pred chhhhCCCCceEEEEeCCCCCCCCCCCcccc------------------cCCCcc--CcCCCceeEEecCCC-CCCCCCC
Q 036903 240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVH------------------LDQGLD--YLPEELTYLHWHGYP-LRTLPTN 298 (323)
Q Consensus 240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~------------------lp~~i~--~L~~~Lr~L~l~~~~-i~~LP~~ 298 (323)
+..|.++++|++|+|++|.+ .. +|+.++ .++ +|++|++++|. ...+|..
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l---------~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~-~L~~L~L~~n~l~~~~p~~ 268 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPF---------VAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCPNLTKLPTF 268 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCC---------CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEECCTTCSSCCTT
T ss_pred CHHHhcccCCCEEECcCCcc---------ccccccccccccccchhcccCchhhhhcccC-CCCEEEecCCcCCccChHH
Confidence 34566677777777777665 22 666666 676 77777777664 3466666
Q ss_pred CC-CCCceEEEcCCCc-cc--ccccc
Q 036903 299 LI-TDKLVVLNLPCSN-VE--LLWEE 320 (323)
Q Consensus 299 i~-L~~L~~L~l~~~~-i~--~lP~~ 320 (323)
++ +++|++|++++|+ ++ .+|.+
T Consensus 269 l~~l~~L~~L~Ls~n~~l~~~~lp~~ 294 (636)
T 4eco_A 269 LKALPEMQLINVACNRGISGEQLKDD 294 (636)
T ss_dssp TTTCSSCCEEECTTCTTSCHHHHHHH
T ss_pred HhcCCCCCEEECcCCCCCccccchHH
Confidence 65 7777777777775 55 35543
No 85
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.14 E-value=3.3e-06 Score=81.66 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=50.3
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CCCCC-CCCceEEEcCCCccc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~~i~-L~~L~~L~l~~~~i~ 315 (323)
+.+..|.++++|++|+|++|.+. ...|..++.++ +|++|++++|.+..+ |..++ +++|++|++++|.+.
T Consensus 72 ~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~ 142 (606)
T 3t6q_A 72 IHEDTFQSQHRLDTLVLTANPLI--------FMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCS--------EECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC
T ss_pred eChhhccCccccCeeeCCCCccc--------ccChhhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCCCccc
Confidence 44566677777777777777651 33466777777 888888888777777 45566 788888888888777
Q ss_pred cc
Q 036903 316 LL 317 (323)
Q Consensus 316 ~l 317 (323)
.+
T Consensus 143 ~~ 144 (606)
T 3t6q_A 143 SI 144 (606)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 86
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.13 E-value=5.8e-06 Score=74.30 Aligned_cols=69 Identities=28% Similarity=0.230 Sum_probs=61.1
Q ss_pred hhCCCCceEEEEeC-CCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcccccc
Q 036903 243 FENMTNLRLLKFYL-PNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 243 ~~~~~~LrvL~L~~-~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP 318 (323)
+..+.+|+.|+|++ |.+ ..+| ..++.|+ +|++|+|++|.+..+|.. ++ |.+|+.|+|++|++..+|
T Consensus 27 l~~~~~L~~L~l~~~n~l---------~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHL---------QHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp SCSCSCCSEEECCSCSSC---------CEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCCCCeeEEEccCCCCC---------CCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 88999999999996 877 5565 5799999 999999999999999875 56 999999999999999999
Q ss_pred ccc
Q 036903 319 EEK 321 (323)
Q Consensus 319 ~~i 321 (323)
.++
T Consensus 97 ~~~ 99 (347)
T 2ifg_A 97 WKT 99 (347)
T ss_dssp STT
T ss_pred HHH
Confidence 754
No 87
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.13 E-value=3.8e-06 Score=80.21 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=41.1
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-------------------CC
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-------------------IT 301 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-------------------~L 301 (323)
..+..+++|++|++++|.+ ..+|..++.++ +|++|++++|.+..+|..+ ++
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l---------~~lp~~~~~~~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l 450 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTF---------HPMPDSCQWPE-KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL 450 (549)
T ss_dssp HHGGGCTTCCEEECTTCCC---------CCCCSCCCCCT-TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCC
T ss_pred hhhhcCCCCCEEECCCCCC---------ccCChhhcccc-cccEEECCCCCcccccchhcCCceEEECCCCChhhhcccC
Confidence 4466777777777777765 45666666665 6666666666665555432 24
Q ss_pred CCceEEEcCCCccccccc
Q 036903 302 DKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 302 ~~L~~L~l~~~~i~~lP~ 319 (323)
++|++|++++|+++.+|.
T Consensus 451 ~~L~~L~Ls~N~l~~ip~ 468 (549)
T 2z81_A 451 PRLQELYISRNKLKTLPD 468 (549)
T ss_dssp TTCCEEECCSSCCSSCCC
T ss_pred ChhcEEECCCCccCcCCC
Confidence 555555555555555554
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.13 E-value=3.8e-06 Score=73.79 Aligned_cols=65 Identities=20% Similarity=0.101 Sum_probs=35.4
Q ss_pred hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903 242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP 318 (323)
.+.++++|+.|++++|.+ ..++. +..++ +|++|++++|.+..+|. +. +++|+.|++++|.+...|
T Consensus 151 ~l~~l~~L~~L~L~~N~l---------~~~~~-l~~l~-~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQI---------SDIVP-LAGLT-KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp GGGGCTTCSEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred hhccCCCCCEEEccCCcc---------ccchh-hcCCC-ccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 445555555555555554 23332 55555 66666666666655554 33 666666666665554444
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.12 E-value=5.3e-06 Score=81.39 Aligned_cols=69 Identities=14% Similarity=0.299 Sum_probs=37.6
Q ss_pred CchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCC-CCC-CCCceEEEcCCCccc
Q 036903 239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPT-NLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~-~i~-L~~L~~L~l~~~~i~ 315 (323)
.+..|.++++|++|+|++|.+ ..+|. .++.++ +|++|++++|.+..+|. .++ +++|++|++++|.+.
T Consensus 65 ~~~~~~~l~~L~~L~L~~n~l---------~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 65 EPELCQKLPMLKVLNLQHNEL---------SQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp CTTHHHHCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred CHHHHhcccCcCEEECCCCcc---------CccChhhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCCccc
Confidence 344555666666666666554 33443 355555 56666665555555543 344 555555555555554
Q ss_pred cc
Q 036903 316 LL 317 (323)
Q Consensus 316 ~l 317 (323)
..
T Consensus 135 ~~ 136 (680)
T 1ziw_A 135 ST 136 (680)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.12 E-value=2.9e-06 Score=74.56 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=55.4
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI 300 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~ 300 (323)
..++.+.+..+.+..+ .+ +.++++|+.|++++|.+ ..+| .+..++ +|++|++++|.+..+| .++
T Consensus 68 ~~L~~L~L~~n~l~~~--~~--l~~l~~L~~L~l~~n~l---------~~~~-~l~~l~-~L~~L~L~~n~i~~~~-~l~ 131 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDI--KP--LANLKNLGWLFLDENKV---------KDLS-SLKDLK-KLKSLSLEHNGISDIN-GLV 131 (291)
T ss_dssp TTCCEEECCSSCCCCC--GG--GTTCTTCCEEECCSSCC---------CCGG-GGTTCT-TCCEEECTTSCCCCCG-GGG
T ss_pred CCCCEEEccCCccCCC--cc--cccCCCCCEEECCCCcC---------CCCh-hhccCC-CCCEEECCCCcCCCCh-hhc
Confidence 3455554444433222 11 67788888888888776 3444 377787 8888888888888875 354
Q ss_pred -CCCceEEEcCCCcccccc
Q 036903 301 -TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 301 -L~~L~~L~l~~~~i~~lP 318 (323)
+.+|++|++++|.++.++
T Consensus 132 ~l~~L~~L~l~~n~l~~~~ 150 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDIT 150 (291)
T ss_dssp GCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCEEEccCCcCCcch
Confidence 888888888888777664
No 91
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.12 E-value=3.2e-06 Score=80.72 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=40.5
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCC--CCCCC-CCCceEEEcCCCc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTL--PTNLI-TDKLVVLNLPCSN 313 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~L--P~~i~-L~~L~~L~l~~~~ 313 (323)
+.+..|.++++|++|++++|.+ ..+|. .++.++ +|++|++++|.+..+ |..++ +++|++|++++|.
T Consensus 65 ~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 65 IEGDAFYSLGSLEHLDLSDNHL---------SSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp ECTTTTTTCTTCCEEECTTSCC---------CSCCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred cChhhccccccCCEEECCCCcc---------CccCHHHhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 3344556666666666666654 33333 266666 666666666666533 45555 6666666666664
Q ss_pred -ccccc
Q 036903 314 -VELLW 318 (323)
Q Consensus 314 -i~~lP 318 (323)
+..+|
T Consensus 135 ~~~~~~ 140 (549)
T 2z81_A 135 TFSEIR 140 (549)
T ss_dssp SCCEEC
T ss_pred cccccC
Confidence 45554
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.12 E-value=3.7e-06 Score=82.54 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=71.1
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~ 300 (323)
.++.+.+....+ ..+.+..|.++++|++|+|+++.+. ...|..++.++ +|++|+|++|.+..+|.. ++
T Consensus 26 ~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 26 NITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTIS--------KLEPELCQKLP-MLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp TCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCC--------CCCTTHHHHCT-TCCEEECCSSCCCCCCTTTTT
T ss_pred CCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccC--------ccCHHHHhccc-CcCEEECCCCccCccChhhhc
Confidence 456665554443 3456677999999999999999872 33467789999 999999999999999985 77
Q ss_pred -CCCceEEEcCCCccccccc
Q 036903 301 -TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 301 -L~~L~~L~l~~~~i~~lP~ 319 (323)
+++|++|++++|.+..+|.
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCS
T ss_pred cCCCCCEEECCCCccCccCh
Confidence 9999999999999998874
No 93
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.11 E-value=3.3e-06 Score=84.31 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=62.1
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
..+..|.+++.|++|+|++|.+. ..+|..++.|+ +|++|+|++|++. .+|..++ |.+|++|++++|++.
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~--------g~ip~~l~~L~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDIS--------GSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCC--------SCCCGGGGGCT-TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred cCCHHHhccccCCEEeCcCCccC--------CCCChHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 45667888999999999999872 47888999998 9999999999887 8888887 999999999999875
Q ss_pred -ccccc
Q 036903 316 -LLWEE 320 (323)
Q Consensus 316 -~lP~~ 320 (323)
.+|++
T Consensus 718 g~iP~~ 723 (768)
T 3rgz_A 718 GPIPEM 723 (768)
T ss_dssp EECCSS
T ss_pred ccCCCc
Confidence 67764
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.11 E-value=3e-06 Score=72.02 Aligned_cols=72 Identities=21% Similarity=0.282 Sum_probs=48.5
Q ss_pred cCchhhhCCCCceEEEEeC-CCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCCCC-CCCce---EEEcCC
Q 036903 238 LGSRAFENMTNLRLLKFYL-PNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLV---VLNLPC 311 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~-~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~---~L~l~~ 311 (323)
+.+..|.++++|+.|++++ +.+ ..+| ..+..++ +|++|++++|.++.+|. ++ +.+|+ +|++++
T Consensus 71 i~~~~f~~l~~L~~L~l~~~n~l---------~~i~~~~f~~l~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~ 139 (239)
T 2xwt_C 71 LESHSFYNLSKVTHIEIRNTRNL---------TYIDPDALKELP-LLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITD 139 (239)
T ss_dssp ECTTTEESCTTCCEEEEEEETTC---------CEECTTSEECCT-TCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEES
T ss_pred eCHhHcCCCcCCcEEECCCCCCe---------eEcCHHHhCCCC-CCCEEeCCCCCCccccc-cccccccccccEEECCC
Confidence 4445666777777777776 555 3444 4566777 77777777777777776 54 66666 777777
Q ss_pred C-cccccccc
Q 036903 312 S-NVELLWEE 320 (323)
Q Consensus 312 ~-~i~~lP~~ 320 (323)
| .++.+|.+
T Consensus 140 N~~l~~i~~~ 149 (239)
T 2xwt_C 140 NPYMTSIPVN 149 (239)
T ss_dssp CTTCCEECTT
T ss_pred CcchhhcCcc
Confidence 7 77777653
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.10 E-value=2e-06 Score=76.15 Aligned_cols=89 Identities=16% Similarity=0.080 Sum_probs=57.9
Q ss_pred ceeEEEEeecCCccccccCc-hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCc---CCCceeEEecCCCCCCCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGS-RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYL---PEELTYLHWHGYPLRTLP 296 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~-~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L---~~~Lr~L~l~~~~i~~LP 296 (323)
..++.+.+..+.+..+.... ..+..+++|+.|+|++|.+. ...|..+..+ + +|++|+|++|.++.+|
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~--------~~~p~~~~~~~~~~-~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLR--------ATVNPSAPRCMWSS-ALNSLNLSFAGLEQVP 267 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCC--------CCCCSCCSSCCCCT-TCCCEECCSSCCCSCC
T ss_pred CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCC--------ccchhhHHhccCcC-cCCEEECCCCCCCchh
Confidence 34555544444432221111 13567788888888888762 2236666655 5 8888888888888888
Q ss_pred CCCCCCCceEEEcCCCccccccc
Q 036903 297 TNLITDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 297 ~~i~L~~L~~L~l~~~~i~~lP~ 319 (323)
..+. ++|++|++++|+++.+|.
T Consensus 268 ~~~~-~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 268 KGLP-AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp SCCC-SCCSCEECCSCCCCSCCC
T ss_pred hhhc-CCCCEEECCCCcCCCCch
Confidence 7765 788888888888877654
No 96
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.10 E-value=2e-06 Score=75.88 Aligned_cols=68 Identities=21% Similarity=0.167 Sum_probs=39.4
Q ss_pred hhCCCCceEEEEeCCCCCCCCCCCcccccC--CCccCcCCCceeEEecCCCCCCCC-CCCC-CCCceEEEcCCCcccc--
Q 036903 243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLD--QGLDYLPEELTYLHWHGYPLRTLP-TNLI-TDKLVVLNLPCSNVEL-- 316 (323)
Q Consensus 243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp--~~i~~L~~~Lr~L~l~~~~i~~LP-~~i~-L~~L~~L~l~~~~i~~-- 316 (323)
|.++++|+.|+++++.+ ..++ ..+..++ +|++|++++|.+..++ ..++ +++|++|++++|.+..
T Consensus 97 ~~~l~~L~~L~l~~n~l---------~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNL---------KQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp EETCTTCCEEECTTSEE---------ESSTTTTTTTTCT-TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred cCCCCCCCEEECCCCcc---------cccccchhhhhcc-CCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 45555555555555544 3333 3566666 6777777766665443 3345 6777777777776654
Q ss_pred cccc
Q 036903 317 LWEE 320 (323)
Q Consensus 317 lP~~ 320 (323)
+|..
T Consensus 167 ~~~~ 170 (306)
T 2z66_A 167 LPDI 170 (306)
T ss_dssp ECSC
T ss_pred chhH
Confidence 5543
No 97
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.10 E-value=5e-06 Score=73.64 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=40.4
Q ss_pred hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903 242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP 318 (323)
.+.++++|+.|++++|.+ ..+|. +..++ +|++|++++|.+..+|. ++ +++|++|++++|.++.+|
T Consensus 102 ~~~~l~~L~~L~l~~n~l---------~~~~~-l~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQI---------TDVTP-LAGLS-NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp GGTTCTTCCEEECTTSCC---------CCCGG-GTTCT-TCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred hhcCCCCCCEEECCCCCC---------CCchh-hcCCC-CCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh
Confidence 455566666666666655 33332 66666 67777777666666665 44 677777777777666555
No 98
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.09 E-value=4.1e-06 Score=74.21 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=48.8
Q ss_pred hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903 243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
+.++++|+.|++++|.+ ..+| .+..++ +|++|++++|.+..+|. ++ +++|++|++++|.+..+|.
T Consensus 81 ~~~l~~L~~L~L~~n~l---------~~~~-~~~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 146 (308)
T 1h6u_A 81 LKNLTKITELELSGNPL---------KNVS-AIAGLQ-SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP 146 (308)
T ss_dssp GTTCCSCCEEECCSCCC---------SCCG-GGTTCT-TCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred HccCCCCCEEEccCCcC---------CCch-hhcCCC-CCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc
Confidence 67777888888887776 3344 577777 88888888888888776 55 8888888888887776663
No 99
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.08 E-value=5.9e-06 Score=83.34 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=53.6
Q ss_pred CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecC------CC-CCCCCCCCC-CCCceEEEcCCCcccc
Q 036903 245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHG------YP-LRTLPTNLI-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~------~~-i~~LP~~i~-L~~L~~L~l~~~~i~~ 316 (323)
.+++|+.|+|++|.+ ..+|..++.++ +|++|+|++ |. ...+|..++ +++|+.|+|++|.+..
T Consensus 751 ~l~~L~~L~Ls~N~L---------~~lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~ 820 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCF---------SSFPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820 (876)
T ss_dssp TCTTCCEEECCSSCC---------SSCCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred cCCCcCEEEeCCCCC---------CccchhhhcCC-CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc
Confidence 788888888888877 45788888888 888888876 43 457788887 8888888888888888
Q ss_pred ccccc
Q 036903 317 LWEEK 321 (323)
Q Consensus 317 lP~~i 321 (323)
+|.++
T Consensus 821 Ip~~l 825 (876)
T 4ecn_A 821 VDEKL 825 (876)
T ss_dssp CCSCC
T ss_pred cCHhh
Confidence 88754
No 100
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.08 E-value=7.2e-08 Score=79.86 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=35.9
Q ss_pred hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903 242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP 318 (323)
.+.++++|+.|++++|.+ ..+|..+..++ +|++|++++|.+..+| .++ +++|++|++++|.+..+|
T Consensus 65 ~~~~l~~L~~L~l~~n~l---------~~l~~~~~~~~-~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~ 131 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNLI---------KKIENLDAVAD-TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWG 131 (198)
T ss_dssp CHHHHTTCCEEEEEEEEE---------CSCSSHHHHHH-HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHH
T ss_pred ccccCCCCCEEECCCCCc---------ccccchhhcCC-cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchh
Confidence 445555555555555544 34555454455 5555666555555555 343 555666666665555443
No 101
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.08 E-value=6.8e-06 Score=79.44 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=42.4
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCC--CCCCCCCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTL--PTNLITDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~L--P~~i~L~~L~~L~l~~~~i 314 (323)
+.+..|.++++|++|++++|.+ ..+ |..++.++ +|++|++++|.+..+ |..+++++|++|++++|.+
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i---------~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGI---------SSIDFIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCC---------SCGGGSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred cChhhhcccccccEeeccccCc---------ccCCcchhccCC-cccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 3445566666666666666665 233 44566666 666666666666655 3333466666666666666
Q ss_pred cccc
Q 036903 315 ELLW 318 (323)
Q Consensus 315 ~~lP 318 (323)
..++
T Consensus 166 ~~~~ 169 (606)
T 3t6q_A 166 HYLS 169 (606)
T ss_dssp CEEC
T ss_pred cccC
Confidence 5553
No 102
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.07 E-value=7.2e-06 Score=76.54 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=40.4
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCC----------------CCcccccCC-CccCcCCCceeEEecCCCCCCCCCCCC
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPI----------------MSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTNLI 300 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~----------------~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~i~ 300 (323)
+....|..+++|+.|+|++|.+..... +.....+|. .+..++ +|++|++++|.+..+|....
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~ 216 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDMPNLTP 216 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSCCCCTT
T ss_pred cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCcccccccccc
Confidence 444556777777777777776521000 000011111 244455 56666666666665554223
Q ss_pred CCCceEEEcCCCccccc
Q 036903 301 TDKLVVLNLPCSNVELL 317 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~l 317 (323)
+.+|++|+|++|.+..+
T Consensus 217 l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 217 LVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CTTCCEEECTTSCCSEE
T ss_pred cccccEEECcCCcCccc
Confidence 66666666666665554
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.06 E-value=3.9e-06 Score=79.29 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=37.9
Q ss_pred CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903 245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
.+++|+.|+|++|.+ ..+|.. ..++ +|++|+|++|.+..+|+.++ +.+|+.|++++|.+..+|..
T Consensus 167 ~l~~L~~L~Ls~N~l---------~~~~~~-~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 167 SSDTLEHLNLQYNFI---------YDVKGQ-VVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp GTTTCCEEECTTSCC---------CEEECC-CCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred hCCcccEEecCCCcc---------cccccc-ccCC-CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh
Confidence 566666666666665 233332 2355 66666666666666665554 66666666666666655554
No 104
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.05 E-value=8.8e-06 Score=75.69 Aligned_cols=93 Identities=18% Similarity=0.199 Sum_probs=47.5
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCC----------------CCcccccCC-CccCcCCCcee
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPI----------------MSSKVHLDQ-GLDYLPEELTY 284 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~----------------~~~~~~lp~-~i~~L~~~Lr~ 284 (323)
.++.+.+..+.+ ..+....|..+++|+.|+|++|.+..... +.....+|. .+..++ +|++
T Consensus 113 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~ 189 (440)
T 3zyj_A 113 NLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRY 189 (440)
T ss_dssp SCCEEECCSSCC--SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCE
T ss_pred cCCEEECCCCcC--CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCe
Confidence 344444433322 23444566777777777777776521000 000011111 345555 6666
Q ss_pred EEecCCCCCCCCCCCCCCCceEEEcCCCccccc
Q 036903 285 LHWHGYPLRTLPTNLITDKLVVLNLPCSNVELL 317 (323)
Q Consensus 285 L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~l 317 (323)
|++++|.+..+|....+.+|++|+|++|.++.+
T Consensus 190 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 190 LNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp EECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred ecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence 666666666666432366666666666666555
No 105
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.03 E-value=1.2e-05 Score=74.80 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=71.2
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CCCCC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PTNLI 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~~i~ 300 (323)
.++.+.+..+.+ ..+.+..|.++++|+.|++++|.+. ...|..++.++ +|++|+|++|.+..+ |..++
T Consensus 300 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~ 368 (455)
T 3v47_A 300 DLEQLTLAQNEI--NKIDDNAFWGLTHLLKLNLSQNFLG--------SIDSRMFENLD-KLEVLDLSYNHIRALGDQSFL 368 (455)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCC--------EECGGGGTTCT-TCCEEECCSSCCCEECTTTTT
T ss_pred CCCEEECCCCcc--cccChhHhcCcccCCEEECCCCccC--------CcChhHhcCcc-cCCEEECCCCcccccChhhcc
Confidence 455554444433 3455678899999999999999872 33467789999 999999999999988 66787
Q ss_pred -CCCceEEEcCCCccccccccc
Q 036903 301 -TDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 301 -L~~L~~L~l~~~~i~~lP~~i 321 (323)
+++|++|++++|.++.+|.++
T Consensus 369 ~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 369 GLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp TCTTCCEEECCSSCCSCCCTTT
T ss_pred ccccccEEECCCCccccCCHhH
Confidence 999999999999999998753
No 106
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.02 E-value=6.1e-06 Score=83.21 Aligned_cols=73 Identities=21% Similarity=0.217 Sum_probs=50.7
Q ss_pred ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC-CCCC--CC-CCCceEEEcCCC
Q 036903 237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT-LPTN--LI-TDKLVVLNLPCS 312 (323)
Q Consensus 237 ~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~-LP~~--i~-L~~L~~L~l~~~ 312 (323)
.+.+..|.++++|++|+|++|.+. ...|+.++.++ +|++|+|++|.+.. +|.. ++ |++|++|++++|
T Consensus 63 ~i~~~~f~~L~~L~~L~Ls~N~l~--------~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N 133 (844)
T 3j0a_A 63 TIDKEAFRNLPNLRILDLGSSKIY--------FLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133 (844)
T ss_dssp EECTTTTSSCTTCCEEECTTCCCC--------EECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCc--------ccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence 344566777777777777777661 33477777787 88888888877764 4554 55 888888888888
Q ss_pred cccccc
Q 036903 313 NVELLW 318 (323)
Q Consensus 313 ~i~~lP 318 (323)
.+..++
T Consensus 134 ~l~~~~ 139 (844)
T 3j0a_A 134 QIRSLY 139 (844)
T ss_dssp CCCCCC
T ss_pred cccccc
Confidence 776553
No 107
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.02 E-value=3.2e-06 Score=84.37 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=64.1
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc-cc
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE-LL 317 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~-~l 317 (323)
..|..+++|++|||++|.+. ..+|..++.++ .|++|+|++|.+. .+|..++ |++|++|||++|++. .+
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~--------g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLS--------GYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCB--------SCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred hhhhccccccEEECcCCccc--------ccCCHHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 45678899999999999872 57899999999 9999999999988 8999998 999999999999987 77
Q ss_pred cccc
Q 036903 318 WEEK 321 (323)
Q Consensus 318 P~~i 321 (323)
|+.+
T Consensus 697 p~~l 700 (768)
T 3rgz_A 697 PQAM 700 (768)
T ss_dssp CGGG
T ss_pred ChHH
Confidence 8754
No 108
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.02 E-value=7.5e-06 Score=73.41 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=37.3
Q ss_pred hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCC
Q 036903 243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCS 312 (323)
Q Consensus 243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~ 312 (323)
|.++++|++|++++|.+ ..+| .+..++ +|++|++++|.+..+|. +. +++|++|++++|
T Consensus 84 ~~~l~~L~~L~L~~n~i---------~~~~-~~~~l~-~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKI---------TDIS-ALQNLT-NLRELYLNEDNISDISP-LANLTKMYSLNLGAN 142 (347)
T ss_dssp GTTCTTCCEEECCSSCC---------CCCG-GGTTCT-TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTC
T ss_pred hhcCCcCCEEEccCCcc---------cCch-HHcCCC-cCCEEECcCCcccCchh-hccCCceeEEECCCC
Confidence 56666666666666655 3333 466666 77777777776666666 44 677777777666
No 109
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.00 E-value=1.1e-05 Score=75.46 Aligned_cols=62 Identities=26% Similarity=0.250 Sum_probs=37.2
Q ss_pred hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903 243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP 318 (323)
+..+++|++|++++|.+ ..+| ++.++ +|++|++++|.+..+| ++ +++|++|++++|.++.+|
T Consensus 81 ~~~l~~L~~L~Ls~N~l---------~~~~--~~~l~-~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~ 143 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKL---------TNLD--VTPLT-KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID 143 (457)
T ss_dssp CTTCTTCSEEECCSSCC---------SCCC--CTTCT-TCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC
T ss_pred cccCCCCCEEECcCCCC---------ceee--cCCCC-cCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec
Confidence 45555666666665554 2332 55666 6666666666666665 54 666666666666665553
No 110
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.00 E-value=5.6e-06 Score=73.56 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=57.1
Q ss_pred hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903 244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
..+++|+.|++++|.+ ..+|..+..++ +|++|++++|.+..+|..+. +++|+.|++++|.+.
T Consensus 188 ~~l~~L~~L~Ls~N~l---------~~l~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 188 VVFAKLKTLDLSSNKL---------AFMGPEFQSAA-GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCTTCCEEECCSSCC---------CEECGGGGGGT-TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cccccCCEEECCCCcC---------CcchhhhcccC-cccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 3589999999999988 67888899999 99999999999999999997 999999999999876
No 111
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.00 E-value=6.4e-05 Score=67.32 Aligned_cols=162 Identities=13% Similarity=0.059 Sum_probs=100.0
Q ss_pred CCceEEEEcCChhhHhhc----C----C--CCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903 13 PGSRIIVTTRDKRVLDNF----G----V--PNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL 82 (323)
Q Consensus 13 ~gs~IlvTTR~~~v~~~~----~----~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 82 (323)
++..+|+|+|........ . . .....+.+.||+.+++.+++...........+. ...|++.|+|.|+
T Consensus 169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G~P~ 244 (357)
T 2fna_A 169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPG 244 (357)
T ss_dssp TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHH
T ss_pred CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCCCHH
Confidence 467899999987542211 0 0 113579999999999999998864221112222 2789999999999
Q ss_pred hHHHHhhhhcCC-ChHHHHH-HHHHhhcCCcccHHHHHH-HHh--cCCChhhHhHhhhhcccCCCCCHHHHHHHHh-hcc
Q 036903 83 ALRVLGSFLHRK-SKLDWEN-ALENLKRSSDFEIYDVLK-ISY--NELNPEEKSLFLDIACFFAGEDKNLVTKILD-DSN 156 (323)
Q Consensus 83 Ai~~ig~~L~~~-~~~~w~~-~l~~l~~~~~~~i~~~l~-~sy--~~L~~~~k~cfl~~s~fp~~~~~~~l~~~w~-~~g 156 (323)
++..++..+... +...|-. +.+.. ...+...+. +.+ ..|++..+..+..++. . . ....+..... ..|
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~~~~~~~g 317 (357)
T 2fna_A 245 WLTYFGFIYLDNKNLDFAINQTLEYA----KKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVKRALELEEG 317 (357)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccccchHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHHHHHHHhcC
Confidence 999998876432 3333321 11111 011111121 111 1678888999998888 2 2 5555543221 111
Q ss_pred -------h--HHHHhhhCCcceEcCCCeEE-ecHHHHHHH
Q 036903 157 -------Y--VLNVLVDKSLLRISRYNKLQ-MHDLLQEMG 186 (323)
Q Consensus 157 -------~--~l~~L~~~~ll~~~~~~~~~-mh~lv~~~~ 186 (323)
. +++.|++.+++...+ +.|+ .|++++++.
T Consensus 318 ~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 318 IEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 1 899999999998764 6677 578888764
No 112
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.99 E-value=8.2e-06 Score=76.46 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=38.5
Q ss_pred hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903 243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP 318 (323)
|.++++|+.|++++|.+ ..++. ++.++ +|++|++++|.+..+|. ++ +++|++|++++|.+..+|
T Consensus 86 ~~~l~~L~~L~l~~n~l---------~~~~~-~~~l~-~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQI---------ADITP-LANLT-NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp GTTCTTCCEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG
T ss_pred hhccccCCEEECCCCcc---------ccChh-hcCCC-CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh
Confidence 55666666666666554 33333 56666 66666666666666655 44 666666666666665554
No 113
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.99 E-value=7.6e-06 Score=72.50 Aligned_cols=60 Identities=18% Similarity=0.121 Sum_probs=27.9
Q ss_pred hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCc-----CCCceeEEecCCCCCCCC-CCCC-CCCceEEEcCCCc
Q 036903 244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYL-----PEELTYLHWHGYPLRTLP-TNLI-TDKLVVLNLPCSN 313 (323)
Q Consensus 244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L-----~~~Lr~L~l~~~~i~~LP-~~i~-L~~L~~L~l~~~~ 313 (323)
..+++|+.|++++|.+ ...|..++.+ + +|++|++++|.+..+| ..++ +++|++|++++|.
T Consensus 118 ~~l~~L~~L~Ls~N~l---------~~~~~~~~~l~~~~~~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSW---------ATRDAWLAELQQWLKP-GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp CCSCCCSEEEEESCBC---------SSSSSHHHHHHTTCCT-TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred hcCCCccEEEccCCCC---------cchhHHHHHHHHhhcC-CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 4455555555555544 2224434433 3 4555555555444444 3333 4455555554444
No 114
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.98 E-value=6e-06 Score=78.31 Aligned_cols=82 Identities=15% Similarity=0.132 Sum_probs=65.6
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC--CCCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT--LPTN 298 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~--LP~~ 298 (323)
..++.+.+..+.+ ..+.+..|.++++|++|+|++|.+ ..+|.. .++ +|++|++++|.+.. +|..
T Consensus 45 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l---------~~lp~~--~l~-~L~~L~L~~N~l~~~~~p~~ 110 (520)
T 2z7x_B 45 SKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKL---------VKISCH--PTV-NLKHLDLSFNAFDALPICKE 110 (520)
T ss_dssp TTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCC---------CEEECC--CCC-CCSEEECCSSCCSSCCCCGG
T ss_pred ccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCce---------eecCcc--ccC-CccEEeccCCccccccchhh
Confidence 4566665554443 345567899999999999999987 578877 788 99999999999986 5678
Q ss_pred CC-CCCceEEEcCCCcccc
Q 036903 299 LI-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 299 i~-L~~L~~L~l~~~~i~~ 316 (323)
++ +++|++|++++|.+..
T Consensus 111 ~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 111 FGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp GGGCTTCCEEEEEESSCCG
T ss_pred hccCCcceEEEecCcccch
Confidence 87 9999999999997753
No 115
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.98 E-value=0.00031 Score=62.64 Aligned_cols=163 Identities=16% Similarity=0.111 Sum_probs=100.0
Q ss_pred CCceEEEEcCChhhHhhc----C----C--CCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903 13 PGSRIIVTTRDKRVLDNF----G----V--PNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL 82 (323)
Q Consensus 13 ~gs~IlvTTR~~~v~~~~----~----~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 82 (323)
++.++|+|++...+...+ . . .....+.+.||+.+|+.+++........... -.+.+..|.+.|||.|+
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAVELLDGIPG 240 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHTTCHH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHH
Confidence 478899999876542211 1 0 1234799999999999999987542211111 13567889999999999
Q ss_pred hHHHHhhhhcC-CChHHHHHHHHHhhcCCcccHHHHHHHHhcCC---ChhhHhHhhhhcccCCCCCHHHHHHHHhhc--c
Q 036903 83 ALRVLGSFLHR-KSKLDWENALENLKRSSDFEIYDVLKISYNEL---NPEEKSLFLDIACFFAGEDKNLVTKILDDS--N 156 (323)
Q Consensus 83 Ai~~ig~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~cfl~~s~fp~~~~~~~l~~~w~~~--g 156 (323)
++..++..+.. .+...+ .+.+.. .+...+.-.+..+ ++..+..+..++. .......+....... |
T Consensus 241 ~l~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~ 311 (350)
T 2qen_A 241 WLVVFGVEYLRNGDFGRA---MKRTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTK 311 (350)
T ss_dssp HHHHHHHHHHHHCCHHHH---HHHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccccHhHH---HHHHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCC
Confidence 99999876532 232222 111110 1111111122222 7788889888887 234555555544111 1
Q ss_pred h-------HHHHhhhCCcceEcCCCeEEe-cHHHHHHHH
Q 036903 157 Y-------VLNVLVDKSLLRISRYNKLQM-HDLLQEMGR 187 (323)
Q Consensus 157 ~-------~l~~L~~~~ll~~~~~~~~~m-h~lv~~~~~ 187 (323)
. +++.|.+.+++... .+.|++ |++++++.+
T Consensus 312 ~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 312 IPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 1 89999999999876 466765 778887753
No 116
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.98 E-value=1e-05 Score=81.54 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=36.8
Q ss_pred CchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC--ccCcCCCceeEEecCCCCCCCCC--CCC-CCCceEEEcCCCc
Q 036903 239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG--LDYLPEELTYLHWHGYPLRTLPT--NLI-TDKLVVLNLPCSN 313 (323)
Q Consensus 239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~--i~~L~~~Lr~L~l~~~~i~~LP~--~i~-L~~L~~L~l~~~~ 313 (323)
.+..|.++++|++|+|++|.+. ...|.. ++.++ +|++|+|++|.+..++. .++ |++|++|++++|.
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLS--------DAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCS--------SCCSTTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CHhHccCCcccCEeeCcCCCCC--------cccccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 3455556666666666665541 122332 55565 66666666665555432 344 6666666666665
Q ss_pred ccc
Q 036903 314 VEL 316 (323)
Q Consensus 314 i~~ 316 (323)
++.
T Consensus 160 i~~ 162 (844)
T 3j0a_A 160 IFL 162 (844)
T ss_dssp CCC
T ss_pred CCe
Confidence 543
No 117
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.98 E-value=6.1e-06 Score=77.98 Aligned_cols=89 Identities=17% Similarity=0.097 Sum_probs=68.9
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCcc-CcCCCceeEEecCCCCCCCCCCCC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLD-YLPEELTYLHWHGYPLRTLPTNLI 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~-~L~~~Lr~L~l~~~~i~~LP~~i~ 300 (323)
.++.+.+..+.+ ..+.+..|.++++|+.|+|++|.+. ...|..+. .++ +|++|+|++|.+..+|....
T Consensus 121 ~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~~~~~ 189 (487)
T 3oja_A 121 GKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEID--------TVNFAELAASSD-TLEHLNLQYNFIYDVKGQVV 189 (487)
T ss_dssp SCEEEECCSSCC--CSGGGBCGGGGSSEEEEECTTSCCC--------EEEGGGGGGGTT-TCCEEECTTSCCCEEECCCC
T ss_pred CCCEEECCCCCC--CCCCchhhcCCCCCCEEECCCCCCC--------CcChHHHhhhCC-cccEEecCCCcccccccccc
Confidence 345554444433 2344567788999999999999872 33566665 788 99999999999999988777
Q ss_pred CCCceEEEcCCCccccccccc
Q 036903 301 TDKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~lP~~i 321 (323)
+.+|++|+|++|.++.+|.++
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~~ 210 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPEF 210 (487)
T ss_dssp CTTCCEEECCSSCCCEECGGG
T ss_pred CCCCCEEECCCCCCCCCCHhH
Confidence 999999999999999988754
No 118
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.96 E-value=1.6e-05 Score=76.21 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=35.0
Q ss_pred CceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903 281 ELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 281 ~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+|++|++++|.++.+|..+. +++|++|++++|+++.+|.+
T Consensus 451 ~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp TCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred cCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 88888888888889998886 88999999999988888875
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.96 E-value=1.1e-05 Score=78.33 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=55.3
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI 300 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~ 300 (323)
..++.+.+..+.+..+ ..|..+++|+.|+|++|.+ ..++. +..++ +|++|+|++|.+..+|. +.
T Consensus 131 ~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l---------~~~~~-l~~l~-~L~~L~Ls~N~i~~l~~-l~ 194 (605)
T 1m9s_A 131 PQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQI---------SDIVP-LAGLT-KLQNLYLSKNHISDLRA-LA 194 (605)
T ss_dssp TTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCBCGG-GT
T ss_pred CccCEEECCCCccCCc----hhhcccCCCCEEECcCCcC---------CCchh-hccCC-CCCEEECcCCCCCCChH-Hc
Confidence 3455555544443322 4567777777787777766 33433 77777 88888888888877764 44
Q ss_pred -CCCceEEEcCCCccccccc
Q 036903 301 -TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 301 -L~~L~~L~l~~~~i~~lP~ 319 (323)
|.+|+.|+|++|.+...|.
T Consensus 195 ~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 195 GLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp TCTTCSEEECCSEEEECCCC
T ss_pred cCCCCCEEEccCCcCcCCcc
Confidence 8888888888887766654
No 120
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.95 E-value=2.6e-06 Score=75.42 Aligned_cols=45 Identities=18% Similarity=0.048 Sum_probs=38.1
Q ss_pred cCcCCCceeEEecCCCCCCC-CCCCC-C---CCceEEEcCCCccccccccc
Q 036903 276 DYLPEELTYLHWHGYPLRTL-PTNLI-T---DKLVVLNLPCSNVELLWEEK 321 (323)
Q Consensus 276 ~~L~~~Lr~L~l~~~~i~~L-P~~i~-L---~~L~~L~l~~~~i~~lP~~i 321 (323)
+.++ +|++|+|++|.+..+ |..+. + ++|++|++++|.++.+|.++
T Consensus 221 ~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~ 270 (310)
T 4glp_A 221 AAGV-QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL 270 (310)
T ss_dssp HHTC-CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC
T ss_pred hcCC-CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh
Confidence 5567 999999999999887 87775 5 69999999999999998864
No 121
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.91 E-value=1.6e-05 Score=74.60 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=58.9
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CCCCC
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PTNLI 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~~i~ 300 (323)
.++.+.+..+.+. .+....|.++++|+.|+|++|.+. ...+..+..++ +|++|+|++|.+..+ |..+.
T Consensus 225 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 225 NLTSLSITHCNLT--AVPYLAVRHLVYLRFLNLSYNPIS--------TIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CCSEEEEESSCCC--SCCHHHHTTCTTCCEEECCSSCCC--------EECTTSCTTCT-TCCEEECCSSCCSEECTTTBT
T ss_pred cccEEECcCCccc--ccCHHHhcCccccCeeECCCCcCC--------ccChhhccccc-cCCEEECCCCccceECHHHhc
Confidence 3444444433322 344566788888888888888762 22334577777 888888888877766 44565
Q ss_pred -CCCceEEEcCCCcccccccc
Q 036903 301 -TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 301 -L~~L~~L~l~~~~i~~lP~~ 320 (323)
+.+|+.|++++|.++.+|.+
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGG
T ss_pred CcccCCEEECCCCcCceeCHh
Confidence 88888888888888777764
No 122
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.90 E-value=1.4e-05 Score=77.61 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=68.4
Q ss_pred cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC
Q 036903 220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL 299 (323)
Q Consensus 220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i 299 (323)
...++.+.+..+.+..+ +.+..+++|+.|+|++|.+ ..+ ..+..++ +|++|+|++|.+..+|. +
T Consensus 108 l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l---------~~l-~~l~~l~-~L~~L~Ls~N~l~~~~~-l 171 (605)
T 1m9s_A 108 LKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKI---------TDI-TVLSRLT-KLDTLSLEDNQISDIVP-L 171 (605)
T ss_dssp CTTCCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCC---------CCC-GGGGSCT-TCSEEECCSSCCCCCGG-G
T ss_pred CCCCCEEEecCCCCCCC----ccccCCCccCEEECCCCcc---------CCc-hhhcccC-CCCEEECcCCcCCCchh-h
Confidence 44566776665554432 4588999999999999987 344 5788999 99999999999999987 7
Q ss_pred C-CCCceEEEcCCCccccccc
Q 036903 300 I-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 300 ~-L~~L~~L~l~~~~i~~lP~ 319 (323)
. +.+|+.|+|++|.+..+|.
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l~~ 192 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDLRA 192 (605)
T ss_dssp TTCTTCCEEECCSSCCCBCGG
T ss_pred ccCCCCCEEECcCCCCCCChH
Confidence 6 9999999999999988864
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.87 E-value=1.1e-05 Score=75.48 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=53.0
Q ss_pred hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903 242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
.+..+++|++|++++|.+ ..+|. ++.++ +|++|++++|.+..+|. ++ +++|++|++++|.++.+|.
T Consensus 63 ~~~~l~~L~~L~Ls~n~l---------~~~~~-~~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 129 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQL---------TDITP-LKNLT-KLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP 129 (466)
T ss_dssp TGGGCTTCCEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred chhhhcCCCEEECCCCcc---------CCchh-hhccc-cCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH
Confidence 367788888888888876 45554 78888 88888888888888887 66 8888888888888877764
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.85 E-value=1.2e-05 Score=75.20 Aligned_cols=79 Identities=28% Similarity=0.277 Sum_probs=64.5
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI- 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~- 300 (323)
.++.+.+....+..+ +.|..+++|++|++++|.+ ..+| ++.++ +|++|++++|.+..+| ++
T Consensus 43 ~L~~L~Ls~n~l~~~----~~l~~l~~L~~L~Ls~n~l---------~~~~--~~~l~-~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM----TGIEKLTGLTKLICTSNNI---------TTLD--LSQNT-NLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp TCCEEECCSSCCCCC----TTGGGCTTCSEEECCSSCC---------SCCC--CTTCT-TCSEEECCSSCCSCCC--CTT
T ss_pred CCCEEEccCCCcccC----hhhcccCCCCEEEccCCcC---------CeEc--cccCC-CCCEEECcCCCCceee--cCC
Confidence 456665555544332 2688999999999999987 4455 88999 9999999999999987 76
Q ss_pred CCCceEEEcCCCcccccc
Q 036903 301 TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~lP 318 (323)
+++|++|++++|.++.+|
T Consensus 105 l~~L~~L~L~~N~l~~l~ 122 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD 122 (457)
T ss_dssp CTTCCEEECCSSCCSCCC
T ss_pred CCcCCEEECCCCcCCeec
Confidence 999999999999998876
No 125
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.84 E-value=1e-05 Score=72.55 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=31.9
Q ss_pred hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCC-CCCC-CCCceEEEcCCCccccc
Q 036903 242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP-TNLI-TDKLVVLNLPCSNVELL 317 (323)
Q Consensus 242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP-~~i~-L~~L~~L~l~~~~i~~l 317 (323)
.+..+++|+.|++++|.+ ..+| .+..++ +|++|++++|.+...+ ..++ +++|++|++++|.++.+
T Consensus 260 ~~~~l~~L~~L~l~~n~l---------~~~~-~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 260 AVKDLTKLKMLNVGSNQI---------SDIS-VLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp GGTTCTTCCEEECCSSCC---------CCCG-GGGGCT-TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred hHhcCCCcCEEEccCCcc---------CCCh-hhcCCC-CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 455556666666666554 2222 244444 5555555555544333 2233 55555555555554444
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.84 E-value=1.2e-07 Score=78.47 Aligned_cols=65 Identities=20% Similarity=0.104 Sum_probs=41.5
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC--CCC-CCCceEEEcCCCcccc
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT--NLI-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~--~i~-L~~L~~L~l~~~~i~~ 316 (323)
..+..+++|+.|++++|.+ ..+| .+..++ +|++|++++|.+..+|. .+. +++|++|++++|.+..
T Consensus 87 ~~~~~~~~L~~L~L~~N~l---------~~l~-~~~~l~-~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 87 NLDAVADTLEELWISYNQI---------ASLS-GIEKLV-NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SHHHHHHHCSEEEEEEEEC---------CCHH-HHHHHH-HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred chhhcCCcCCEEECcCCcC---------CcCC-ccccCC-CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 3445556677777777765 3344 466666 77777777777776654 444 7777777777776643
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.84 E-value=4.1e-05 Score=74.45 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=17.6
Q ss_pred CceeEEecCCCCCCCCCCCCCCCceEEEcCCCccccccc
Q 036903 281 ELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 281 ~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP~ 319 (323)
+|++|++++|.+..+|.. +++|++|++++|.++.+|.
T Consensus 122 ~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 122 GLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp TCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSCCCC
T ss_pred CcCEEECCCCCCCcCCCC--CCCCCEEECcCCcCCCcCC
Confidence 344444444444444432 2455555666555555544
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.77 E-value=4.9e-05 Score=71.08 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=52.6
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI- 300 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~- 300 (323)
.++.+.+..+.+.. ++ .|.++++|++|++++|.+ ..+|..+ . +|++|++++|.+..+| .++
T Consensus 132 ~L~~L~L~~n~l~~--lp--~~~~l~~L~~L~l~~N~l---------~~lp~~~---~-~L~~L~L~~n~l~~l~-~~~~ 193 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK--LP--ELQNSSFLKIIDVDNNSL---------KKLPDLP---P-SLEFIAAGNNQLEELP-ELQN 193 (454)
T ss_dssp TCCEEECCSSCCSS--CC--CCTTCTTCCEEECCSSCC---------SCCCCCC---T-TCCEEECCSSCCSSCC-CCTT
T ss_pred CCCEEECcCCCCCC--Cc--ccCCCCCCCEEECCCCcC---------cccCCCc---c-cccEEECcCCcCCcCc-cccC
Confidence 45555555444433 22 478888888888888876 3455443 3 7777777777777777 455
Q ss_pred CCCceEEEcCCCccccccc
Q 036903 301 TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 301 L~~L~~L~l~~~~i~~lP~ 319 (323)
+++|++|++++|.++.+|.
T Consensus 194 l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 194 LPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp CTTCCEEECCSSCCSSCCC
T ss_pred CCCCCEEECCCCcCCcCCC
Confidence 7777777777777766654
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.75 E-value=5.3e-05 Score=72.82 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=41.9
Q ss_pred CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCc-------eEEEcCCCccccc
Q 036903 245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKL-------VVLNLPCSNVELL 317 (323)
Q Consensus 245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L-------~~L~l~~~~i~~l 317 (323)
.+++|+.|+|++|.+ ..+|. +. + +|++|+|++|.|+.+|. +.- +| ++|+|++|.|+.+
T Consensus 158 ~l~~L~~L~Ls~N~L---------~~lp~-l~--~-~L~~L~Ls~N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~l 222 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQL---------TFLPE-LP--E-SLEALDVSTNLLESLPA-VPV-RNHHSEETEIFFRCRENRITHI 222 (571)
T ss_dssp CCTTCCEEECCSSCC---------SCCCC-CC--T-TCCEEECCSSCCSSCCC-CC---------CCEEEECCSSCCCCC
T ss_pred cCCCcCEEECCCCCC---------CCcch-hh--C-CCCEEECcCCCCCchhh-HHH-hhhcccccceEEecCCCcceec
Confidence 345677777777665 44666 54 5 78888888888888877 421 44 8888888888888
Q ss_pred cccc
Q 036903 318 WEEK 321 (323)
Q Consensus 318 P~~i 321 (323)
|.++
T Consensus 223 p~~l 226 (571)
T 3cvr_A 223 PENI 226 (571)
T ss_dssp CGGG
T ss_pred CHHH
Confidence 8754
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.73 E-value=4.6e-05 Score=74.05 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=15.3
Q ss_pred CceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcc
Q 036903 281 ELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 281 ~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i 314 (323)
+|++|+|++|.+..+|..++ +++|+.|+|++|.+
T Consensus 262 ~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 262 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp TCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred cCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 44444444444444444443 44444444444443
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.68 E-value=7.5e-05 Score=71.80 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=41.9
Q ss_pred CCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCc-------eeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903 247 TNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEEL-------TYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~L-------r~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
++|+.|+|++|.+ ..+|. +.. +| ++|+|++|.|+.+|..+. +++|++|+|++|.+.
T Consensus 180 ~~L~~L~Ls~N~L---------~~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 180 ESLEALDVSTNLL---------ESLPA-VPV---RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp TTCCEEECCSSCC---------SSCCC-CC-----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred CCCCEEECcCCCC---------Cchhh-HHH---hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 7888888888876 45665 332 55 888888888888888876 888888888888774
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.60 E-value=5.9e-05 Score=67.86 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=49.1
Q ss_pred cCchhhhCCC-CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecC-CCCCCCCCCC-C-CCCceEEEcCCCc
Q 036903 238 LGSRAFENMT-NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHG-YPLRTLPTNL-I-TDKLVVLNLPCSN 313 (323)
Q Consensus 238 ~~~~~~~~~~-~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~-~~i~~LP~~i-~-L~~L~~L~l~~~~ 313 (323)
+....|..+. .+++|+|++|.+ ..+|..+.... +|+.|++++ +.++.+|... + +.+|++|++++|+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i---------~~i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGI---------QEIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCC---------CEECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred ccccchhhcchhhhhhccccccc---------cCCChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 3444555543 577788887776 56666666666 777777764 4677777653 5 7777777777777
Q ss_pred ccccccc
Q 036903 314 VELLWEE 320 (323)
Q Consensus 314 i~~lP~~ 320 (323)
|+.+|.+
T Consensus 214 l~~lp~~ 220 (350)
T 4ay9_X 214 IHSLPSY 220 (350)
T ss_dssp CCCCCSS
T ss_pred cCccChh
Confidence 7777764
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.60 E-value=8.9e-05 Score=66.69 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=51.8
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCce-eEEecCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELT-YLHWHGYPLRTLPTN- 298 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr-~L~l~~~~i~~LP~~- 298 (323)
.++.+.+..+.+ -.+...+|.++++|+.|+|++|.+. ..+|. .+..|+ +|. .+.+.++++..+|..
T Consensus 31 ~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~--------~~i~~~~f~~L~-~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 31 NAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVL--------EVIEADVFSNLP-KLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp TCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTC--------CEECTTSBCSCT-TCCEEEEEEETTCCEECTTS
T ss_pred CCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCC--------CccChhHhhcch-hhhhhhcccCCcccccCchh
Confidence 355555555544 3466778999999999999998862 22332 345555 433 344445556665433
Q ss_pred CC-CCCceEEEcCCCccccccc
Q 036903 299 LI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 299 i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
++ |++|++|++++|.++.+|.
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCC
T ss_pred hhhccccccccccccccccCCc
Confidence 34 6666666666666655554
No 134
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.53 E-value=0.00018 Score=67.27 Aligned_cols=64 Identities=16% Similarity=0.025 Sum_probs=35.6
Q ss_pred hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903 242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~ 319 (323)
.|.++++|+.|++++|.+ ..+|... + +|++|++++|.+..+|. ++ +.+|++|++++|.++.+|.
T Consensus 190 ~~~~l~~L~~L~l~~N~l---------~~l~~~~---~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSL---------KKLPDLP---L-SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp CCTTCTTCCEEECCSSCC---------SSCCCCC---T-TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS
T ss_pred cccCCCCCCEEECCCCcC---------CcCCCCc---C-cccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc
Confidence 367777777777777765 2333322 2 55555555555555553 43 5555555555555555443
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.45 E-value=6e-05 Score=65.21 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=51.9
Q ss_pred hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CC--CceEEEcCCCccc
Q 036903 244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TD--KLVVLNLPCSNVE 315 (323)
Q Consensus 244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~--~L~~L~l~~~~i~ 315 (323)
.++++|+.|+|++|.+. ....+|..++.++ +|++|+|++|.+..+. .+. |. +|++|+|.+|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~------~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLY------RLDDMSSIVQKAP-NLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCC------CCGGGTTHHHHST-TCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCC------CCccchhHHhhCC-CCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 67899999999999883 1235667778899 9999999999999883 343 55 9999999999875
No 136
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.39 E-value=3.8e-05 Score=69.98 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=66.8
Q ss_pred ceeEEEEeecCCccccc---cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC--
Q 036903 221 DVIAGIFLDLSKIRDIH---LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-- 295 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~---~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-- 295 (323)
..++.+.+..+.+.... +.+..+.++++|++|+|++|.+.. .....+|..+..++ +|++|+|++|.+...
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----~g~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----LGSSALAIALKSWP-NLRELGLNDCLLSARGA 261 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----HHHHHHHHHGGGCT-TCCEEECTTCCCCHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc----HHHHHHHHHHccCC-CcCEEECCCCCCchhhH
Confidence 36667766655443211 233377889999999999987610 00144677888888 999999999988753
Q ss_pred ---CCCC--C-CCCceEEEcCCCcccc-----cccc
Q 036903 296 ---PTNL--I-TDKLVVLNLPCSNVEL-----LWEE 320 (323)
Q Consensus 296 ---P~~i--~-L~~L~~L~l~~~~i~~-----lP~~ 320 (323)
|..+ + +++|++|+|++|.+.. +|..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 6665 4 8899999999998876 7654
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.29 E-value=2.6e-05 Score=71.05 Aligned_cols=95 Identities=14% Similarity=-0.032 Sum_probs=68.9
Q ss_pred ccceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCc--cCcCCCceeEEecCCCCCC
Q 036903 219 GTDVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGL--DYLPEELTYLHWHGYPLRT 294 (323)
Q Consensus 219 ~~~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i--~~L~~~Lr~L~l~~~~i~~ 294 (323)
....++.+.+..+.+.. ....+..+.++++|+.|+|++|.+.. .....+|..+ +.++ +|++|+|++|.+..
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~l~~~~~~-~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA----RGAAAVVDAFSKLENI-GLQTLRLQYNEIEL 288 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH----HHHHHHHHHHHTCSSC-CCCEEECCSSCCBH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch----hhHHHHHHHHhhccCC-CeEEEECcCCcCCH
Confidence 34567777666554421 12334578899999999999998720 0001256666 4488 99999999999998
Q ss_pred -----CCCCC-C-CCCceEEEcCCCcccccc
Q 036903 295 -----LPTNL-I-TDKLVVLNLPCSNVELLW 318 (323)
Q Consensus 295 -----LP~~i-~-L~~L~~L~l~~~~i~~lP 318 (323)
+|..+ . +++|++|++++|.+...+
T Consensus 289 ~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99988 5 899999999999887544
No 138
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.03 E-value=0.0022 Score=58.55 Aligned_cols=153 Identities=13% Similarity=-0.014 Sum_probs=87.3
Q ss_pred CCceEEEEcCChhhHhh-------cCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc------C
Q 036903 13 PGSRIIVTTRDKRVLDN-------FGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCK------G 79 (323)
Q Consensus 13 ~gs~IlvTTR~~~v~~~-------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~------G 79 (323)
.+..||+||+...+... ........+.++|++.++++++|...+........--.+....|++.|+ |
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC
Confidence 34458888876654311 1001122399999999999999987643111111112456788999999 9
Q ss_pred CchhHHHHhhhh-c-----CC---ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhcccC----CCCCHH
Q 036903 80 NPLALRVLGSFL-H-----RK---SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFF----AGEDKN 146 (323)
Q Consensus 80 lPLAi~~ig~~L-~-----~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp----~~~~~~ 146 (323)
.|..+..+.... . .. +...+..+...... ...+.-+++.||++.+.++..++.+. ..+...
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~ 331 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAG 331 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHH
Confidence 997655554321 1 11 23333333332210 23345567889999999998888653 124444
Q ss_pred HHHHHHh-----hcc--------h--HHHHhhhCCcceEc
Q 036903 147 LVTKILD-----DSN--------Y--VLNVLVDKSLLRIS 171 (323)
Q Consensus 147 ~l~~~w~-----~~g--------~--~l~~L~~~~ll~~~ 171 (323)
.+...+. ..| + +++.|++.+++...
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 332 LLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 4333221 111 1 89999999999765
No 139
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.01 E-value=6.8e-05 Score=66.69 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=53.3
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCC-CCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCC--CC
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLP-NRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRT--LP 296 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~-~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~--LP 296 (323)
..++.+.+..+.. .......+.++++|+.|++++| .+ ....+|..+..++ +|++|++++| .+.. +|
T Consensus 118 ~~L~~L~L~~~~l--~~~~~~~l~~~~~L~~L~L~~~~~l-------~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 118 SKLQNLSLEGLRL--SDPIVNTLAKNSNLVRLNLSGCSGF-------SEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp CCCSEEECTTCBC--CHHHHHHHTTCTTCSEEECTTCBSC-------CHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHH
T ss_pred CCCCEEeCcCccc--CHHHHHHHhcCCCCCEEECCCCCCC-------CHHHHHHHHhcCC-CCCEEcCCCCCCcChHHHH
Confidence 4555554443322 1123345667788888888877 44 1123666677777 8888888888 7764 56
Q ss_pred CCCC-CC-CceEEEcCCCc
Q 036903 297 TNLI-TD-KLVVLNLPCSN 313 (323)
Q Consensus 297 ~~i~-L~-~L~~L~l~~~~ 313 (323)
..++ ++ +|++|++++|.
T Consensus 188 ~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp HHHHHSCTTCCEEECCSCG
T ss_pred HHHHhcccCCCEEEeCCCc
Confidence 6666 77 88888888884
No 140
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.99 E-value=5.4e-05 Score=67.36 Aligned_cols=86 Identities=20% Similarity=0.218 Sum_probs=57.0
Q ss_pred cceeEEEEeecC-CccccccCchhhhCCCCceEEEEeCC-CCCCCCCCCcccccCCCccCcCCCceeEEecCCC--C--C
Q 036903 220 TDVIAGIFLDLS-KIRDIHLGSRAFENMTNLRLLKFYLP-NRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYP--L--R 293 (323)
Q Consensus 220 ~~~~~~l~~~~~-~~~~l~~~~~~~~~~~~LrvL~L~~~-~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~--i--~ 293 (323)
...++.+.+..+ .... ......+.++++|+.|++++| .+ ....++..+..++.+|++|++++|. + .
T Consensus 141 ~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l-------~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDF-------TEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp CTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTC-------CHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred CCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCc-------ChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 445666655544 2211 112345678888999999888 65 2223566666666588889998884 3 4
Q ss_pred CCCCCCC-CCCceEEEcCCCc
Q 036903 294 TLPTNLI-TDKLVVLNLPCSN 313 (323)
Q Consensus 294 ~LP~~i~-L~~L~~L~l~~~~ 313 (323)
.+|..++ +++|++|++++|.
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCT
T ss_pred HHHHHHhhCCCCCEEeCCCCC
Confidence 5677766 8889999998887
No 141
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.73 E-value=0.00037 Score=62.85 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=37.5
Q ss_pred CCceEEEEeCCCCCCCCCCCcccccCC----CccCc-CCCceeEEecCCCCCCCCCC-----CC-C-CCceEEEcCCCcc
Q 036903 247 TNLRLLKFYLPNRRGDPIMSSKVHLDQ----GLDYL-PEELTYLHWHGYPLRTLPTN-----LI-T-DKLVVLNLPCSNV 314 (323)
Q Consensus 247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~----~i~~L-~~~Lr~L~l~~~~i~~LP~~-----i~-L-~~L~~L~l~~~~i 314 (323)
++|+.|+|++|.+. ...+. .+..+ + +|++|++++|.+...+.. +. + .+|++|++++|.+
T Consensus 80 ~~L~~L~Ls~n~l~--------~~~~~~l~~~l~~~~~-~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 80 ANVTSLNLSGNFLS--------YKSSDELVKTLAAIPF-TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp TTCCEEECCSSCGG--------GSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred CCccEEECcCCcCC--------hHHHHHHHHHHHhCCC-CccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 77777777777651 11122 23333 5 788888888877766553 11 2 4788888888877
Q ss_pred c
Q 036903 315 E 315 (323)
Q Consensus 315 ~ 315 (323)
.
T Consensus 151 ~ 151 (362)
T 3goz_A 151 G 151 (362)
T ss_dssp G
T ss_pred C
Confidence 6
No 142
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.48 E-value=0.0046 Score=47.11 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=40.8
Q ss_pred EEEEeCCCCCCCCCCCccc--ccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCc
Q 036903 251 LLKFYLPNRRGDPIMSSKV--HLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSN 313 (323)
Q Consensus 251 vL~L~~~~~~~~~~~~~~~--~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~ 313 (323)
+++.++.++ + .+|..+ +.+|++|+|++|.|..||..+ . +.+|++|+|.+|.
T Consensus 12 ~v~Cs~~~L---------~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGL---------TWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCC---------CTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCC---------ccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 566666655 4 677654 448999999999999999886 5 9999999999874
No 143
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.36 E-value=0.00069 Score=61.06 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=61.8
Q ss_pred eEEEEeecCCcccccc--CchhhhCCC-CceEEEEeCCCCCCCCCCCcccccCCCccCc-----CCCceeEEecCCCCCC
Q 036903 223 IAGIFLDLSKIRDIHL--GSRAFENMT-NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYL-----PEELTYLHWHGYPLRT 294 (323)
Q Consensus 223 ~~~l~~~~~~~~~l~~--~~~~~~~~~-~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L-----~~~Lr~L~l~~~~i~~ 294 (323)
++.+.+..+.+..... ....|.+++ +|+.|+|++|.+. ..-+..+..+ + +|++|+|++|.+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~--------~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--------FKNSDELVQILAAIPA-NVTSLNLSGNFLSY 94 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG--------GSCHHHHHHHHHTSCT-TCCEEECCSSCGGG
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC--------HHHHHHHHHHHhccCC-CccEEECcCCcCCh
Confidence 6666555444322211 116788898 8999999999872 2223445554 6 99999999999986
Q ss_pred CCCC-----CC-C-CCceEEEcCCCccccccc
Q 036903 295 LPTN-----LI-T-DKLVVLNLPCSNVELLWE 319 (323)
Q Consensus 295 LP~~-----i~-L-~~L~~L~l~~~~i~~lP~ 319 (323)
.+.. +. + .+|++|++++|.+...+.
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 6554 32 4 899999999999987664
No 144
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.35 E-value=0.00057 Score=63.41 Aligned_cols=64 Identities=22% Similarity=0.153 Sum_probs=34.7
Q ss_pred CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CC----C-CC-CCCceEEEcCCCcccc
Q 036903 248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PT----N-LI-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~----~-i~-L~~L~~L~l~~~~i~~ 316 (323)
+|+.|++++|.+... ....+|..+..++ +|++|++++|.+... +. . .. +.+|++|++++|.+..
T Consensus 86 ~L~~L~L~~n~i~~~----~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGA----GCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp CCCEEECTTSCCBGG----GHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred ceeEEEccCCCCCHH----HHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 566777766665100 0013455666666 777777776665422 11 1 12 4467777777776553
No 145
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.26 E-value=0.00038 Score=64.58 Aligned_cols=87 Identities=16% Similarity=-0.006 Sum_probs=59.2
Q ss_pred ceeEEEEeecCCcccc--ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCcc-CcC---CCceeEEecCCCCC-
Q 036903 221 DVIAGIFLDLSKIRDI--HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLD-YLP---EELTYLHWHGYPLR- 293 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l--~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~-~L~---~~Lr~L~l~~~~i~- 293 (323)
..++.+.+..+.+... ......+..+++|++|++++|.+. ..-+..+. .++ .+|++|++++|.+.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--------~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--------HHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--------hHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence 3566666665554322 133466788899999999998761 11121221 222 15999999999887
Q ss_pred ----CCCCCCC-CCCceEEEcCCCccc
Q 036903 294 ----TLPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 294 ----~LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
.+|..+. +++|++|++++|.+.
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHHHHHHHccCCceeEEECCCCcCc
Confidence 5688887 999999999999875
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.22 E-value=0.01 Score=52.56 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=64.0
Q ss_pred eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCce-eEEecCCCCCCCCCC-
Q 036903 222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELT-YLHWHGYPLRTLPTN- 298 (323)
Q Consensus 222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr-~L~l~~~~i~~LP~~- 298 (323)
.++.+.+. ......+...+|.++.+|+.|++.++ + ..+++ .+..+. +|+ .+.+.+ +++.++..
T Consensus 227 ~L~~l~L~--~n~i~~I~~~aF~~~~~L~~l~l~~n-i---------~~I~~~aF~~~~-~L~~~l~l~~-~l~~I~~~a 292 (329)
T 3sb4_A 227 NLVSLDIS--KTNATTIPDFTFAQKKYLLKIKLPHN-L---------KTIGQRVFSNCG-RLAGTLELPA-SVTAIEFGA 292 (329)
T ss_dssp TCCEEECT--TBCCCEECTTTTTTCTTCCEEECCTT-C---------CEECTTTTTTCT-TCCEEEEECT-TCCEECTTT
T ss_pred CCeEEECC--CCCcceecHhhhhCCCCCCEEECCcc-c---------ceehHHHhhCCh-hccEEEEEcc-cceEEchhh
Confidence 44454333 22234567788999999999999876 4 44544 577888 899 999988 78888755
Q ss_pred CC-CCCceEEEcCCCcccccccc
Q 036903 299 LI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 299 i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+. +.+|+.|++.+++++.++.+
T Consensus 293 F~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 293 FMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TTTCTTEEEEEECSSCCCEECTT
T ss_pred hhCCccCCEEEeCCCccCccchh
Confidence 55 99999999999999888874
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.83 E-value=0.0012 Score=59.90 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=57.4
Q ss_pred ceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC----
Q 036903 221 DVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT---- 294 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~---- 294 (323)
..++.+.+..+.+.. .......+...++|+.|+|++|.+... ....++..+...+ +|++|+|++|.+..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~----g~~~L~~~L~~~~-~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE----GLELLAAQLDRNR-QLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH----HHHHHHHHGGGCS-CCCEEECCSSCCCHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH----HHHHHHHHHhcCC-CcCeEECCCCCCCHHHHH
Confidence 346666555554322 122334557788899999988876100 0013455666777 89999999888763
Q ss_pred -CCCCCC-CCCceEEEcCCCccc
Q 036903 295 -LPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 295 -LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
++..+. .++|++|+|++|.|.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 344444 688999999988775
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.73 E-value=0.0048 Score=53.16 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=55.9
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCC-CceeEEecCCCCC-CCCC-
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPE-ELTYLHWHGYPLR-TLPT- 297 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~-~Lr~L~l~~~~i~-~LP~- 297 (323)
..++++.+..+.+..+.-.+..+.++++|+.|+|++|.+ ..+ ..++.+.. +|++|+|++|.+. .+|.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i---------~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL---------KSE-RELDKIKGLKLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC---------CSG-GGGGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc---------CCc-hhhhhcccCCcceEEccCCcCccccCcc
Confidence 356777777666655544456778999999999999988 222 22333321 7999999999886 4663
Q ss_pred ------CCC-CCCceEEEc
Q 036903 298 ------NLI-TDKLVVLNL 309 (323)
Q Consensus 298 ------~i~-L~~L~~L~l 309 (323)
.+. +++|+.||=
T Consensus 240 ~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHHCTTCCEESS
T ss_pred hhHHHHHHHHCcccCeECC
Confidence 245 899999874
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.70 E-value=0.0045 Score=49.76 Aligned_cols=85 Identities=16% Similarity=0.077 Sum_probs=53.0
Q ss_pred cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCc----CCCceeEEecCC-CCCC
Q 036903 220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYL----PEELTYLHWHGY-PLRT 294 (323)
Q Consensus 220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L----~~~Lr~L~l~~~-~i~~ 294 (323)
.-.++.+-+..+.+. ...-..+.++++|+.|+|++|... ....+ ..|..+ + +|++|+|++| +|+.
T Consensus 60 ~~~L~~LDLs~~~It--d~GL~~L~~~~~L~~L~L~~C~~I------tD~gL-~~L~~~~~~~~-~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 60 KYKIQAIDATDSCIM--SIGFDHMEGLQYVEKIRLCKCHYI------EDGCL-ERLSQLENLQK-SMLEMEIISCGNVTD 129 (176)
T ss_dssp CCCEEEEEEESCCCC--GGGGGGGTTCSCCCEEEEESCTTC------CHHHH-HHHHTCHHHHH-HCCEEEEESCTTCCH
T ss_pred CceEeEEeCcCCCcc--HHHHHHhcCCCCCCEEEeCCCCcc------CHHHH-HHHHhcccccC-CCCEEEcCCCCcCCH
Confidence 335666655544332 122244678999999999999631 11111 123332 3 6999999998 5653
Q ss_pred --CCCCCC-CCCceEEEcCCC-ccc
Q 036903 295 --LPTNLI-TDKLVVLNLPCS-NVE 315 (323)
Q Consensus 295 --LP~~i~-L~~L~~L~l~~~-~i~ 315 (323)
+- .+. +++|++|++++| .|+
T Consensus 130 ~Gl~-~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 KGII-ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHH-HGGGCTTCCEEEEESCTTCC
T ss_pred HHHH-HHhcCCCCCEEECCCCCCCC
Confidence 21 234 899999999999 354
No 150
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.57 E-value=0.37 Score=43.07 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=89.6
Q ss_pred CCceEEEEcCChhhH----hhcCCCCcceEEcCCCCHHhHHHHHHHhhhc---CCCCCCChHHHHHHHHHHhc---CCch
Q 036903 13 PGSRIIVTTRDKRVL----DNFGVPNTNIYKVRGLNYSEALELFCNFAFK---QSNCPDGLFTLSKHIVGYCK---GNPL 82 (323)
Q Consensus 13 ~gs~IlvTTR~~~v~----~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~~~~~~~~i~~~c~---GlPL 82 (323)
.+..||+||+..... ..........+.++|++.++..++|...+.. ....+ .+....+++.|+ |.|.
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHH
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHH
Confidence 678899999875321 1110011238999999999999999998632 22222 245677888888 8877
Q ss_pred -hHHHHhhhh--c---CC-ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhcccCCCCCHH-HHHHHHhh
Q 036903 83 -ALRVLGSFL--H---RK-SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKN-LVTKILDD 154 (323)
Q Consensus 83 -Ai~~ig~~L--~---~~-~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~~~-~l~~~w~~ 154 (323)
|+..+-.+. . .. +.+.+..+++... ...+..+++.|+++.+..+..++....+-++. .....-..
T Consensus 240 ~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~ 312 (384)
T 2qby_B 240 KAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNK 312 (384)
T ss_dssp HHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 433333322 1 12 6677777766542 24567788899988888777666511101111 11121111
Q ss_pred cch----------HHHHhhhCCcceEc
Q 036903 155 SNY----------VLNVLVDKSLLRIS 171 (323)
Q Consensus 155 ~g~----------~l~~L~~~~ll~~~ 171 (323)
.|. +++.|.+.|+++..
T Consensus 313 ~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 313 FKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 111 88999999999874
No 151
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.33 E-value=0.002 Score=61.74 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=40.3
Q ss_pred CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC--CCCCCC-CCCceEEEcCCCccc
Q 036903 245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT--LPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~--LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
.+++|+.|++++|.+ ....++..+..++ +|++|++++|.+.. +|..+. +++|+.|++++|+++
T Consensus 461 ~~~~L~~L~L~~n~l-------~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGE-------SDEGLMEFSRGCP-NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp SCTTCCEEEECSCCS-------SHHHHHHHHTCCT-TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred hCccceEeeccCCCC-------CHHHHHHHHhcCc-ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 356666666666654 2223444456667 88888888887542 344444 788888888888754
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.23 E-value=0.034 Score=49.09 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=32.2
Q ss_pred cCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcccccccc
Q 036903 278 LPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 278 L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
++ +|++|+|++|+++.+|.. +. +.+|+.|++.++ ++.+|++
T Consensus 225 ~~-~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~ 267 (329)
T 3sb4_A 225 MP-NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR 267 (329)
T ss_dssp CT-TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred cC-CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH
Confidence 45 888899988888888886 45 888999988776 6666653
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.97 E-value=0.0031 Score=57.20 Aligned_cols=67 Identities=18% Similarity=0.114 Sum_probs=50.1
Q ss_pred CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC-----CCCCCC-CCCceEEEcCCCcccc
Q 036903 245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT-----LPTNLI-TDKLVVLNLPCSNVEL 316 (323)
Q Consensus 245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~-----LP~~i~-L~~L~~L~l~~~~i~~ 316 (323)
...+|+.|+|++|.+.. .....++..+...+ +|++|+|++|.+.. |+..+. ..+|++|+|++|.|..
T Consensus 153 ~~~~L~~L~Ls~n~l~~----~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTA----AGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TTCCCCEEECCSSCCHH----HHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCccceeeCCCCCCCh----HHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 46889999999998710 00023555667788 99999999998864 355565 7899999999998863
No 154
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.95 E-value=0.025 Score=46.81 Aligned_cols=78 Identities=6% Similarity=-0.029 Sum_probs=54.2
Q ss_pred CCCCceEEEEcCChhh-HhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhh
Q 036903 11 FGPGSRIIVTTRDKRV-LDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGS 89 (323)
Q Consensus 11 ~~~gs~IlvTTR~~~v-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~ 89 (323)
...+..+|+||+.... ..... .....+.+++++.++..+++...+....... -++....|++.|+|.|..+..+..
T Consensus 153 ~~~~~~~i~~t~~~~~~~~~l~-~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 153 PPEHVKFLLATTDPQKLPVTIL-SRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp CCTTEEEEEEESCGGGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCceEEEEEeCChHhCCHHHH-HHhhhccCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3567888888876542 22111 1246899999999999999998875432211 135578899999999999887765
Q ss_pred hh
Q 036903 90 FL 91 (323)
Q Consensus 90 ~L 91 (323)
.+
T Consensus 230 ~~ 231 (250)
T 1njg_A 230 QA 231 (250)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.86 E-value=0.0046 Score=50.06 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=49.4
Q ss_pred ceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEe--cCCCCCC--
Q 036903 221 DVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHW--HGYPLRT-- 294 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l--~~~~i~~-- 294 (323)
..++.+.+..+.+.. .......+...+.|+.|+|++|.+... ....+...+...+ .|++|+| ++|.+..
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~----g~~~l~~~L~~n~-~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS----GILALVEALQSNT-SLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH----HHHHHHHGGGGCS-SCCEEECCCCSSCCCHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH----HHHHHHHHHHhCC-CceEEEecCCCCCCCHHH
Confidence 345555444443321 112234455667777777777776200 0012445566666 7788888 6666653
Q ss_pred ---CCCCCC-CCCceEEEcCCCccc
Q 036903 295 ---LPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 295 ---LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
+...+. .+.|++|+|++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 333444 567788888777654
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.76 E-value=0.003 Score=57.02 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=43.1
Q ss_pred CCCCceEEEEeCCCCCCCCCCCcccccCCC---ccCcCCCceeEEecCCCCCC-----CCCCCC-CCCceEEEcCCCccc
Q 036903 245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQG---LDYLPEELTYLHWHGYPLRT-----LPTNLI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~---i~~L~~~Lr~L~l~~~~i~~-----LP~~i~-L~~L~~L~l~~~~i~ 315 (323)
.+++||+|+|.+|.+. ...+.. ...++ +|++|+|+.|.+.. ++..+. +++|+.|++++|.|.
T Consensus 250 ~~p~Lr~L~L~~~~i~--------~~~~~~la~a~~~~-~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQ--------NVVVEMFLESDILP-QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTH--------HHHHHHHHHCSSGG-GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCc--------hHHHHHHHhCccCC-CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4788888888887761 111111 12467 88999998887765 566665 888999999888764
No 157
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.32 E-value=0.81 Score=40.59 Aligned_cols=152 Identities=13% Similarity=0.007 Sum_probs=85.5
Q ss_pred CCceEEEEcCChhhHhhcC----CC-CcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc---CCchhH
Q 036903 13 PGSRIIVTTRDKRVLDNFG----VP-NTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCK---GNPLAL 84 (323)
Q Consensus 13 ~gs~IlvTTR~~~v~~~~~----~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~---GlPLAi 84 (323)
.+..+|+||+.......+. .. ....+.++|++.++..+++...+........--.+....+++.++ |.|..+
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 3566788888664432221 00 125899999999999999998753211111112455677888887 998844
Q ss_pred HH-Hhhhhc-----C--C-ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhcccCC-C---CCHHHHHHH
Q 036903 85 RV-LGSFLH-----R--K-SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFFA-G---EDKNLVTKI 151 (323)
Q Consensus 85 ~~-ig~~L~-----~--~-~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~-~---~~~~~l~~~ 151 (323)
.. +..+.. + . +.+.+..+++... ...+.-++..+|.+.+..+..++...+ + +....+.+.
T Consensus 242 ~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~ 314 (386)
T 2qby_A 242 LDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYET 314 (386)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHH
Confidence 33 322221 1 1 4555555555432 235666778899888777766653221 1 223322121
Q ss_pred H-------hhcc-----h--HHHHhhhCCcceEc
Q 036903 152 L-------DDSN-----Y--VLNVLVDKSLLRIS 171 (323)
Q Consensus 152 w-------~~~g-----~--~l~~L~~~~ll~~~ 171 (323)
+ .... + +++.|.+.|+++..
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 315 YLNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 1111 1 88999999999764
No 158
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=93.71 E-value=0.013 Score=55.89 Aligned_cols=92 Identities=15% Similarity=0.008 Sum_probs=51.3
Q ss_pred ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC---
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT--- 297 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~--- 297 (323)
..++.+.+..+..-.-......+.++++|++|++++|.+... ....++.....++ +|++|++++|. ..++.
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~----~~~~l~~~~~~~~-~L~~L~l~~~~-~~~~~~~l 203 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV----SGHWLSHFPDTYT-SLVSLNISCLA-SEVSFSAL 203 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC----CGGGGGGSCTTCC-CCCEEECTTCC-SCCCHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc----chHHHHHHhhcCC-cCcEEEecccC-CcCCHHHH
Confidence 356666554331101111223445788888888888764100 0112344444666 88888888875 33332
Q ss_pred --CCC-CCCceEEEcCCC-cccccc
Q 036903 298 --NLI-TDKLVVLNLPCS-NVELLW 318 (323)
Q Consensus 298 --~i~-L~~L~~L~l~~~-~i~~lP 318 (323)
-+. +++|++|++.+| .+..+|
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~ 228 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLA 228 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHH
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHH
Confidence 123 688999999888 454444
No 159
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.61 E-value=0.039 Score=52.66 Aligned_cols=42 Identities=14% Similarity=0.087 Sum_probs=30.0
Q ss_pred CCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcc
Q 036903 272 DQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 272 p~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i 314 (323)
+..+..++ +|+.|+++++....+|..+. +++|++|++++|.+
T Consensus 263 ~~~l~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 263 YMNLVFPR-KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp SSCCCCCT-TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred HHHhhccc-cccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence 34556666 67777776666667777776 88888888888864
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.59 E-value=0.011 Score=47.83 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=60.8
Q ss_pred cceeEEEEeecC-Ccc--ccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC--
Q 036903 220 TDVIAGIFLDLS-KIR--DIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT-- 294 (323)
Q Consensus 220 ~~~~~~l~~~~~-~~~--~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~-- 294 (323)
...++.+.+... .+. ........+...+.|++|+|++|.+... ....+...+...+ +|++|+|++|.|..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~----g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP----VAFALAEMLKVNN-TLKSLNVESNFISGSG 109 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH----HHHHHHHHHHHCS-SCCEEECCSSCCCHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH----HHHHHHHHHHhCC-CcCEEECcCCcCCHHH
Confidence 345666665544 332 1223345677788999999999987200 0012444555567 89999999998875
Q ss_pred ---CCCCCC-CCCceEEEc--CCCccc
Q 036903 295 ---LPTNLI-TDKLVVLNL--PCSNVE 315 (323)
Q Consensus 295 ---LP~~i~-L~~L~~L~l--~~~~i~ 315 (323)
|...+. .++|++|+| ++|.|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 566666 788999999 778764
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=93.41 E-value=0.021 Score=45.79 Aligned_cols=60 Identities=5% Similarity=0.012 Sum_probs=41.4
Q ss_pred CCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCCCC-CCCC-C----CCceEEEcCCCc-cc
Q 036903 247 TNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRTLP-TNLI-T----DKLVVLNLPCSN-VE 315 (323)
Q Consensus 247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~LP-~~i~-L----~~L~~L~l~~~~-i~ 315 (323)
-.|+.||+++|.+. ...+ ..+..++ +|+.|+|++| .++.-- ..+. + ++|++|+|++|. |+
T Consensus 61 ~~L~~LDLs~~~It-------d~GL-~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIM-------SIGF-DHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCC-------GGGG-GGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCcc-------HHHH-HHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 36999999999872 2333 3467888 9999999999 454310 0111 3 369999999984 54
No 162
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.32 E-value=1 Score=40.09 Aligned_cols=153 Identities=10% Similarity=0.023 Sum_probs=86.7
Q ss_pred CCceEEEEcCChhhHhhcCC----C-CcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHh---------c
Q 036903 13 PGSRIIVTTRDKRVLDNFGV----P-NTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYC---------K 78 (323)
Q Consensus 13 ~gs~IlvTTR~~~v~~~~~~----~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c---------~ 78 (323)
.+..||+||+.......... . ....+.++|++.++..+++...+........--.+....+++.+ +
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNR 237 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTS
T ss_pred CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCC
Confidence 46778888887654332210 0 12369999999999999999876421101111235677899999 7
Q ss_pred CCchhHHHHhhh-hc-----CC---ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhcccC---C--CCC
Q 036903 79 GNPLALRVLGSF-LH-----RK---SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFF---A--GED 144 (323)
Q Consensus 79 GlPLAi~~ig~~-L~-----~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp---~--~~~ 144 (323)
|.|..+..+... .. +. +.+....+.+..... .+.-.+..|+.+.+.++..++.+. . .+.
T Consensus 238 G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~ 310 (389)
T 1fnn_A 238 GDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYIT 310 (389)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCcc
Confidence 877544433322 21 11 233333333332211 123345678888887777666543 1 234
Q ss_pred HHHHHHHHhh-------cc-----h--HHHHhhhCCcceEcC
Q 036903 145 KNLVTKILDD-------SN-----Y--VLNVLVDKSLLRISR 172 (323)
Q Consensus 145 ~~~l~~~w~~-------~g-----~--~l~~L~~~~ll~~~~ 172 (323)
...+...+.. .. + ++++|.+.|++....
T Consensus 311 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 311 FGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEee
Confidence 4444443322 11 1 899999999998753
No 163
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.84 E-value=1.4 Score=39.08 Aligned_cols=150 Identities=9% Similarity=0.018 Sum_probs=86.0
Q ss_pred CCCceEEEEcCChhhHh----hcCCC-CcceEEcCCCCHHhHHHHHHHhhhc---CCCCCCChHHHHHHHHHHhc---CC
Q 036903 12 GPGSRIIVTTRDKRVLD----NFGVP-NTNIYKVRGLNYSEALELFCNFAFK---QSNCPDGLFTLSKHIVGYCK---GN 80 (323)
Q Consensus 12 ~~gs~IlvTTR~~~v~~----~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~~~~~~~~i~~~c~---Gl 80 (323)
..+..+|.||+...... ..... ....+.+++++.++..+++...+.. ....++ +....+++.++ |.
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~ 241 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGD 241 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCC
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccC
Confidence 34567888887653211 11001 1247899999999999999988632 222233 34667888888 99
Q ss_pred ch-hHHHHhhhhc-----C--C-ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhc-ccCC-C-CCHHHH
Q 036903 81 PL-ALRVLGSFLH-----R--K-SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIA-CFFA-G-EDKNLV 148 (323)
Q Consensus 81 PL-Ai~~ig~~L~-----~--~-~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s-~fp~-~-~~~~~l 148 (323)
|- |+..+..+.. + . +.+.+..+++... ...+.-++..|+.+.+..+.... ++.. + +....+
T Consensus 242 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~ 314 (387)
T 2v1u_A 242 ARRALDLLRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEI 314 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence 94 3333322221 1 1 5566666665542 23466678899998887776665 3321 1 333433
Q ss_pred HHHHhh----cch----------HHHHhhhCCcceEc
Q 036903 149 TKILDD----SNY----------VLNVLVDKSLLRIS 171 (323)
Q Consensus 149 ~~~w~~----~g~----------~l~~L~~~~ll~~~ 171 (323)
.+.... .|. +++.|...|+++..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 315 YERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 332211 111 88889999998864
No 164
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=92.68 E-value=0.01 Score=56.68 Aligned_cols=84 Identities=18% Similarity=0.092 Sum_probs=54.7
Q ss_pred ceeEEEEeecCCccccccCchhh-hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC-----
Q 036903 221 DVIAGIFLDLSKIRDIHLGSRAF-ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT----- 294 (323)
Q Consensus 221 ~~~~~l~~~~~~~~~l~~~~~~~-~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~----- 294 (323)
..++.+.+....... .....+ ..+++|+.|+|.+|... ....++..+..++ +|++|++++|.+..
T Consensus 105 ~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~------~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTD--DCLELIAKSFKNFKVLVLSSCEGF------STDGLAAIAATCR-NLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp TTCCEEEEESCBCCH--HHHHHHHHHCTTCCEEEEESCEEE------EHHHHHHHHHHCT-TCCEEECTTCEEECCCGGG
T ss_pred CCCCeEEeeCcEEcH--HHHHHHHHhCCCCcEEeCCCcCCC------CHHHHHHHHHhCC-CCCEEeCcCCccCCcchHH
Confidence 356666555443211 111223 36899999999998320 1122555556788 99999999987554
Q ss_pred CCCCCC-CCCceEEEcCCCc
Q 036903 295 LPTNLI-TDKLVVLNLPCSN 313 (323)
Q Consensus 295 LP~~i~-L~~L~~L~l~~~~ 313 (323)
++.... +++|++|++++|.
T Consensus 176 l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCC
T ss_pred HHHHhhcCCcCcEEEecccC
Confidence 444444 8899999999986
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=89.76 E-value=0.15 Score=45.84 Aligned_cols=55 Identities=24% Similarity=0.199 Sum_probs=40.5
Q ss_pred hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC----C---CCCCceEEEcC
Q 036903 241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN----L---ITDKLVVLNLP 310 (323)
Q Consensus 241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~----i---~L~~L~~L~l~ 310 (323)
..+..+++|+.|.|.++.. ..+|. +. ++ +|+.|+|..|.+ +.. + .+++|++|+|.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~---------l~l~~-~~-~~-~L~~L~L~~~~l---~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNN---------LSIGK-KP-RP-NLKSLEIISGGL---PDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHTCTTCCEEEEECCBT---------CBCCS-CB-CT-TCSEEEEECSBC---CHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHhcCCCCcEEEEeCCCC---------ceecc-cc-CC-CCcEEEEecCCC---ChHHHHHHHHccCCCCcEEEEe
Confidence 5678899999999998742 24554 43 77 999999987754 332 1 38899999985
No 166
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.26 E-value=1.9 Score=37.23 Aligned_cols=75 Identities=9% Similarity=0.108 Sum_probs=48.7
Q ss_pred CCCCceEEEEcCChh-hHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchh-HHHHh
Q 036903 11 FGPGSRIIVTTRDKR-VLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLA-LRVLG 88 (323)
Q Consensus 11 ~~~gs~IlvTTR~~~-v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLA-i~~ig 88 (323)
...++++|+||+... +...+. +....+.+.+++.++..+++...+......- -++....|++.|+|.|.. +..+.
T Consensus 134 ~~~~~~~il~~~~~~~l~~~l~-sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 134 YSNSTRFAFACNQSNKIIEPLQ-SQCAILRYSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TTTTEEEEEEESCGGGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCceEEEEeCChhhchhHHH-hhceEEeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 446778888886643 222221 1234899999999999999998764322111 135577899999999954 44443
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.06 E-value=0.39 Score=36.17 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=27.0
Q ss_pred CceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCC
Q 036903 248 NLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPL 292 (323)
Q Consensus 248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i 292 (323)
+|+.|+|++|.+ ..+|.. +..++ +|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l---------~~l~~~~f~~l~-~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNL---------TALPPGLLDALP-ALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCC---------SSCCTTTGGGCT-TCCEEECCSSCC
T ss_pred CCCEEECCCCcC---------CccChhhhhhcc-ccCEEEecCCCe
Confidence 588899998887 566654 56777 899999988744
No 168
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.91 E-value=0.47 Score=38.31 Aligned_cols=76 Identities=5% Similarity=0.003 Sum_probs=50.4
Q ss_pred CCCCceEEEEcCChhh-HhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhh
Q 036903 11 FGPGSRIIVTTRDKRV-LDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGS 89 (323)
Q Consensus 11 ~~~gs~IlvTTR~~~v-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~ 89 (323)
...++++|+||+.... ..... .....+.+++++.++..+++...+....... -++....+++.++|.|..+..+..
T Consensus 129 ~~~~~~~i~~~~~~~~~~~~l~-~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 129 YSKSCRFILSCNYVSRIIEPIQ-SRCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp TTTTEEEEEEESCGGGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCeEEEEeCChhhcCHHHH-HhCceeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567888998876532 11111 0223889999999999999998774322111 135577889999999986655443
No 169
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=87.27 E-value=0.71 Score=41.91 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=43.2
Q ss_pred ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCC
Q 036903 237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPC 311 (323)
Q Consensus 237 ~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~ 311 (323)
.+...+|.++.+|+.+++.++.+ ..+|...-... .|+.+.+..+ ++.++... . +.+|+.+++.+
T Consensus 170 ~I~~~aF~~c~~L~~l~l~~n~l---------~~I~~~aF~~~-~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 170 QLKEDIFYYCYNLKKADLSKTKI---------TKLPASTFVYA-GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp EECSSTTTTCTTCCEEECTTSCC---------SEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred EehHHHhhCcccCCeeecCCCcc---------eEechhhEeec-ccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 35567788888899998887765 45555443345 7777777633 66666653 4 77777777765
No 170
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=86.27 E-value=1.2 Score=40.34 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=29.0
Q ss_pred ccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcccccccc
Q 036903 275 LDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLWEE 320 (323)
Q Consensus 275 i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP~~ 320 (323)
+..+. +|+.+.|..+ ++.++.. +. + +|+.+++.++.+..++.+
T Consensus 319 F~~c~-~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 319 LGGNR-KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTTCC-SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred hcCCC-CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 44455 7778887543 7777654 44 7 888888888877766653
No 171
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=78.47 E-value=3 Score=35.93 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=51.1
Q ss_pred CCCCCceEEEEcCChhh-HhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHh
Q 036903 10 RFGPGSRIIVTTRDKRV-LDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLG 88 (323)
Q Consensus 10 ~~~~gs~IlvTTR~~~v-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig 88 (323)
....++++|+||....- ...+. +....+.+.+++.++..+++...+......- -++....|++.++|.|..+..+.
T Consensus 136 ~~~~~~~~i~~~~~~~~l~~~l~-sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 136 MFSSNVRFILSCNYSSKIIEPIQ-SRCAIFRFRPLRDEDIAKRLRYIAENEGLEL--TEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp HTTTTEEEEEEESCGGGSCHHHH-HTEEEEECCCCCHHHHHHHHHHHHHTTTCEE--CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCCeEEEEeCCccccCHHHH-hhCcEEEecCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHCCCCHHHHHHHH
Confidence 34567888888876532 11111 0224789999999999999988764322111 13557789999999998766554
Q ss_pred hhh
Q 036903 89 SFL 91 (323)
Q Consensus 89 ~~L 91 (323)
...
T Consensus 213 ~~~ 215 (327)
T 1iqp_A 213 QAA 215 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 172
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=63.84 E-value=37 Score=28.63 Aligned_cols=82 Identities=6% Similarity=0.045 Sum_probs=52.3
Q ss_pred hhcCCCCCCCCceEEEEcCChh-hHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903 4 LTGGLDRFGPGSRIIVTTRDKR-VLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL 82 (323)
Q Consensus 4 l~~~~~~~~~gs~IlvTTR~~~-v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 82 (323)
|...+.....++++|+||.... +...+. +....+.+.+++.++..+.+...+......- -++....+++.++|.+.
T Consensus 122 L~~~le~~~~~~~~i~~~~~~~~l~~~l~-sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r 198 (319)
T 2chq_A 122 LRRTMEMYSKSCRFILSCNYVSRIIEPIQ-SRCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFR 198 (319)
T ss_dssp TGGGTSSSSSSEEEEEEESCGGGSCHHHH-TTCEEEECCCCCHHHHHHHHHHHHHTTCCCB--CHHHHHHHHHTTTTCHH
T ss_pred HHHHHHhcCCCCeEEEEeCChhhcchHHH-hhCeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 4444555566788888876553 222221 1234899999999999999988764322111 13456778899999987
Q ss_pred hHHHHh
Q 036903 83 ALRVLG 88 (323)
Q Consensus 83 Ai~~ig 88 (323)
.+....
T Consensus 199 ~~~~~l 204 (319)
T 2chq_A 199 KAINAL 204 (319)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 173
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=62.27 E-value=29 Score=28.93 Aligned_cols=91 Identities=21% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCCceEEEEcCChhhHhhcC--CCCcceEEcCCCCH-HhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcC------Cch
Q 036903 12 GPGSRIIVTTRDKRVLDNFG--VPNTNIYKVRGLNY-SEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKG------NPL 82 (323)
Q Consensus 12 ~~gs~IlvTTR~~~v~~~~~--~~~~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~G------lPL 82 (323)
+.+..||.||.......... ......+.+++++. ++...++.... ..+ .+....|++.+.| ++-
T Consensus 165 ~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~~---~~~~~~l~~~~~g~~~~g~ir~ 237 (272)
T 1d2n_A 165 GRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NFK---DKERTTIAQQVKGKKVWIGIKK 237 (272)
T ss_dssp TCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CSC---HHHHHHHHHHHTTSEEEECHHH
T ss_pred CCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CCC---HHHHHHHHHHhcCCCccccHHH
Confidence 34456777888775544321 11246789999998 66666665531 111 3456778888887 334
Q ss_pred hHHHHhhhhcCCChHHHHHHHHHhhcC
Q 036903 83 ALRVLGSFLHRKSKLDWENALENLKRS 109 (323)
Q Consensus 83 Ai~~ig~~L~~~~~~~w~~~l~~l~~~ 109 (323)
++..+-.+-...+...++.+++.+...
T Consensus 238 l~~~l~~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 238 LLMLIEMSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHc
Confidence 344433333333556777777766544
No 174
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=61.50 E-value=18 Score=31.74 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=14.5
Q ss_pred ccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEc
Q 036903 275 LDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNL 309 (323)
Q Consensus 275 i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l 309 (323)
+.... +|+.+.|..+ ++.++.. +. +.+|+.+.+
T Consensus 306 F~~c~-~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 306 FMDCV-KLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred hcCCC-CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 33344 5555555422 4444433 22 444544443
No 175
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=60.10 E-value=31 Score=27.65 Aligned_cols=51 Identities=10% Similarity=-0.048 Sum_probs=36.9
Q ss_pred ceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHh
Q 036903 36 NIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLG 88 (323)
Q Consensus 36 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig 88 (323)
..+.+++++.++..+++...+...... --.+....+++.++|.+-.+..+-
T Consensus 167 ~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 167 LTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp EEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHH
Confidence 689999999999999999887432211 113567788899999876665443
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=53.92 E-value=22 Score=30.95 Aligned_cols=74 Identities=7% Similarity=0.016 Sum_probs=48.0
Q ss_pred CCCceEEEEcCChh-hHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHh
Q 036903 12 GPGSRIIVTTRDKR-VLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLG 88 (323)
Q Consensus 12 ~~gs~IlvTTR~~~-v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig 88 (323)
..+..+|++|.... +..... +....+.+.+++.++..+++...+-...... -.+....|++.++|.|..+..+.
T Consensus 147 ~~~~~~Il~~~~~~~l~~~l~-sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~--~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 147 PEHVKFLLATTDPQKLPVTIL-SRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CSSEEEEEEESCGGGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCceEEEEEeCChHhCcHHHH-hheeEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHCCCCHHHHHHHH
Confidence 44566777765443 222221 1336899999999999999988763221111 13456779999999999877654
No 177
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.79 E-value=46 Score=28.23 Aligned_cols=148 Identities=12% Similarity=0.007 Sum_probs=78.8
Q ss_pred CceEEEEcCChh-hHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhc
Q 036903 14 GSRIIVTTRDKR-VLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLH 92 (323)
Q Consensus 14 gs~IlvTTR~~~-v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~ 92 (323)
+.++|.||.... +...+-......+.+.+++.++..+++...+......- -.+....+++.++|.|-.+..+...+.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 455666665442 21111111235799999999999999988874322211 135678899999999988776654442
Q ss_pred C------C---ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhc-ccCCC-CCHHHHHHHHhhcch----
Q 036903 93 R------K---SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIA-CFFAG-EDKNLVTKILDDSNY---- 157 (323)
Q Consensus 93 ~------~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s-~fp~~-~~~~~l~~~w~~~g~---- 157 (323)
. . +......+++.+ ...+..++...+..+.... .|..+ +....+.+...-..-
T Consensus 216 ~~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 216 DFAQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTSTTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 1 1 233333333322 1223455555555554433 23222 444443332211100
Q ss_pred HHH-HhhhCCcceEcCCCe
Q 036903 158 VLN-VLVDKSLLRISRYNK 175 (323)
Q Consensus 158 ~l~-~L~~~~ll~~~~~~~ 175 (323)
.+. .+++.++++....|+
T Consensus 284 ~l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp HTHHHHHHTTSEEEETTEE
T ss_pred HHhHHHHHhcchhcCCccc
Confidence 223 377888888765454
No 178
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=52.23 E-value=18 Score=31.74 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=42.1
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCC
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPC 311 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~ 311 (323)
+...+|.++..|+.+.+... + ..++. .+.... +|+.+.+.++.++.++.. +. +.+|+.++|.+
T Consensus 254 I~~~aF~~~~~l~~i~l~~~-i---------~~i~~~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYAK-V---------KTVPYLLCSGCS-NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp ECTTTTTTCTTCCEEEECCC-C---------SEECTTTTTTCT-TCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred eCccccceeehhcccccccc-c---------eecccccccccc-ccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 45567778888888887543 2 33333 345556 788888887778888765 44 77888887753
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=47.47 E-value=36 Score=30.92 Aligned_cols=70 Identities=13% Similarity=0.193 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCh---------hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcC-CCCCCChHHHHHHHHHHhcCCc
Q 036903 12 GPGSRIIVTTRDK---------RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQ-SNCPDGLFTLSKHIVGYCKGNP 81 (323)
Q Consensus 12 ~~gs~IlvTTR~~---------~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~i~~~c~GlP 81 (323)
..|..||+||.+. .+...+. ....+.+++++.++-.+++...+... ...++ ++...|++.++|.+
T Consensus 225 ~~~~~iIitt~~~~~~l~~l~~~L~sR~~--~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~ 299 (440)
T 2z4s_A 225 DSGKQIVICSDREPQKLSEFQDRLVSRFQ--MGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNL 299 (440)
T ss_dssp TTTCEEEEEESSCGGGCSSCCHHHHHHHH--SSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCH
T ss_pred HCCCeEEEEECCCHHHHHHHHHHHHhhcc--CCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCH
Confidence 3577899998763 2233333 34678999999999999999887432 12222 34667888888877
Q ss_pred hhHHH
Q 036903 82 LALRV 86 (323)
Q Consensus 82 LAi~~ 86 (323)
-.+..
T Consensus 300 R~l~~ 304 (440)
T 2z4s_A 300 RRLRG 304 (440)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 180
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=45.00 E-value=12 Score=18.85 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.0
Q ss_pred cCCchhHHHHhhhhcCC
Q 036903 78 KGNPLALRVLGSFLHRK 94 (323)
Q Consensus 78 ~GlPLAi~~ig~~L~~~ 94 (323)
..+|||+.++++.+..+
T Consensus 9 rklplavav~agv~~aq 25 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCTHHHHHHHHTTCCC
T ss_pred ccCchHHHHHHHHhHhh
Confidence 46899999999987654
No 181
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=41.67 E-value=5.8 Score=32.05 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=44.0
Q ss_pred CchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC-----CCCCCC-CCCceEEEcCCC
Q 036903 239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT-----LPTNLI-TDKLVVLNLPCS 312 (323)
Q Consensus 239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~-----LP~~i~-L~~L~~L~l~~~ 312 (323)
....+..-..|+.|+|++|.+... .-..+-+.+..=+ .|+.|+|++|.|.. |-+.+. =+.|++|+|.++
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~----ga~alA~aL~~N~-tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDS----EARGLIELIETSP-SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHH----HHTTHHHHHHHCS-SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChH----HHHHHHHHHhcCC-ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 345667778999999999987200 0011222333334 79999999998752 222233 346999999865
Q ss_pred c
Q 036903 313 N 313 (323)
Q Consensus 313 ~ 313 (323)
.
T Consensus 137 ~ 137 (197)
T 1pgv_A 137 R 137 (197)
T ss_dssp S
T ss_pred c
Confidence 3
No 182
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=40.82 E-value=53 Score=28.36 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=47.2
Q ss_pred CCCCCceEEEEcCCh-hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHh
Q 036903 10 RFGPGSRIIVTTRDK-RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLG 88 (323)
Q Consensus 10 ~~~~gs~IlvTTR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig 88 (323)
....++.+|++|.+. .+...+. +....+.+++++.++..+.+.... ..+ ++....+++.++|.|..+..+.
T Consensus 134 ep~~~~~~Il~t~~~~~l~~ti~-SRc~~~~~~~~~~~~~~~~L~~~~----~~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 134 EPPAETWFFLATREPERLLATLR-SRCRLHYLAPPPEQYAVTWLSREV----TMS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp SCCTTEEEEEEESCGGGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHC----CCC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred CCCCCeEEEEEeCChHhCcHHHh-hcceeeeCCCCCHHHHHHHHHHhc----CCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 344566767666654 3433332 134579999999999999888775 111 2445779999999997665544
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.30 E-value=1.6e+02 Score=27.17 Aligned_cols=51 Identities=8% Similarity=0.146 Sum_probs=35.5
Q ss_pred cceEEcCCCCHHhHHHHHHHhhhcCC-CCCCChHHHHHHHHHHhcCC-chhHHHHh
Q 036903 35 TNIYKVRGLNYSEALELFCNFAFKQS-NCPDGLFTLSKHIVGYCKGN-PLALRVLG 88 (323)
Q Consensus 35 ~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~c~Gl-PLAi~~ig 88 (323)
...+.+++++.++..+.+...+.... ..++ +....|++.++|- +-|+..+.
T Consensus 201 ~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 201 CLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 45789999999999999988765322 2222 3467789999994 44555543
No 184
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=38.83 E-value=27 Score=30.90 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=21.8
Q ss_pred ccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCC
Q 036903 275 LDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCS 312 (323)
Q Consensus 275 i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~ 312 (323)
+.... +|+.+.+..+ ++.++.. +. +.+|+.+++..+
T Consensus 339 F~~c~-~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 339 FRGCT-SLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCT-TCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccCCC-CCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 44455 6777777544 6666554 34 777777776543
No 185
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=38.32 E-value=50 Score=29.12 Aligned_cols=69 Identities=12% Similarity=0.177 Sum_probs=42.4
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV 314 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i 314 (323)
+....|..+.+|+.+.+..+ + ..++ ..+.... +|+.+.+..+ ++.++.. +. +.+|+.+++..+ +
T Consensus 288 i~~~~F~~~~~L~~i~l~~~-i---------~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l 354 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS-V---------KFIGEEAFESCT-SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L 354 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT-C---------CEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred eccccccccccccccccccc-c---------ceechhhhcCCC-CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c
Confidence 33445566666666666432 1 2232 2355566 8888888644 7788665 45 889999988655 5
Q ss_pred ccccc
Q 036903 315 ELLWE 319 (323)
Q Consensus 315 ~~lP~ 319 (323)
+.+++
T Consensus 355 ~~I~~ 359 (394)
T 4fs7_A 355 RKIGA 359 (394)
T ss_dssp CEECT
T ss_pred cEehH
Confidence 55543
No 186
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=36.01 E-value=59 Score=28.66 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=36.4
Q ss_pred cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCC
Q 036903 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCS 312 (323)
Q Consensus 238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~ 312 (323)
+...+|.++.+|+.+++..+ + ..+. ..+.... +|+.+.+..+ ++.++.. +. +.+|+.+++.++
T Consensus 302 I~~~aF~~c~~L~~i~lp~~-v---------~~I~~~aF~~C~-~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 302 LPESVFAGCISLKSIDIPEG-I---------TQILDDAFAGCE-QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-C---------CEECTTTTTTCT-TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred cCceeecCCCCcCEEEeCCc-c---------cEehHhHhhCCC-CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 34455566666666665432 1 2222 2344555 7777777543 6777654 44 778888887765
No 187
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=33.38 E-value=78 Score=27.84 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=39.9
Q ss_pred CchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccc
Q 036903 239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVE 315 (323)
Q Consensus 239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~ 315 (323)
...+|.++..|+.+.+... + ..+++ .+.... +|+.+.+..+ ++.++.. +. +.+|+.+.+..+ ++
T Consensus 280 ~~~aF~~c~~L~~i~l~~~-i---------~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~ 346 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFSSR-I---------TELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT 346 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-C---------CEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC
T ss_pred cCcccccccccccccCCCc-c---------cccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC
Confidence 3344555555555555321 1 23333 344456 7888888754 7777665 55 889999988654 55
Q ss_pred cccc
Q 036903 316 LLWE 319 (323)
Q Consensus 316 ~lP~ 319 (323)
.+++
T Consensus 347 ~I~~ 350 (394)
T 4gt6_A 347 KIPE 350 (394)
T ss_dssp BCCG
T ss_pred EEhH
Confidence 5544
No 188
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=25.67 E-value=47 Score=16.63 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=13.7
Q ss_pred CCCCCCCCceEEEEcCCh
Q 036903 7 GLDRFGPGSRIIVTTRDK 24 (323)
Q Consensus 7 ~~~~~~~gs~IlvTTR~~ 24 (323)
+++..-.|+.|+|||...
T Consensus 3 PlPa~eeGaT~lVtTKT~ 20 (26)
T 2gkw_B 3 PVPATELGSTELVTTKTA 20 (26)
T ss_pred cccccccCceEEEEeccC
Confidence 455666799999999764
No 189
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=25.51 E-value=3e+02 Score=23.14 Aligned_cols=72 Identities=13% Similarity=-0.015 Sum_probs=44.1
Q ss_pred ceEEEEcCChhh-HhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHh
Q 036903 15 SRIIVTTRDKRV-LDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLG 88 (323)
Q Consensus 15 s~IlvTTR~~~v-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig 88 (323)
..+|.||..... ....-......+.+.+++.++..+++...+...... --.+....+++.+.|.|-.+..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 456655554322 111111133689999999999999999877432211 113556778889999986555443
No 190
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=23.33 E-value=3.2e+02 Score=22.94 Aligned_cols=64 Identities=8% Similarity=0.045 Sum_probs=39.9
Q ss_pred CCceEEEEcCCh---------hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903 13 PGSRIIVTTRDK---------RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL 82 (323)
Q Consensus 13 ~gs~IlvTTR~~---------~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 82 (323)
.|.+||+||... .+...+. ....+.++| +.++..+++...+......-+ ++....|++.+ |-.-
T Consensus 130 ~~~~iii~~~~~~~~l~~l~~~L~sR~~--~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 130 LEKQIILASDRHPQKLDGVSDRLVSRFE--GGILVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNVR 202 (324)
T ss_dssp TTCEEEEEESSCGGGCTTSCHHHHHHHH--TSEEEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSHH
T ss_pred CCCeEEEEecCChHHHHHhhhHhhhccc--CceEEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCHH
Confidence 466788887643 1222332 335789999 999999999988743222111 34566677777 6543
No 191
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=21.73 E-value=1.4e+02 Score=25.62 Aligned_cols=76 Identities=11% Similarity=-0.040 Sum_probs=49.1
Q ss_pred CCCCCCceEEEEcCC-------hhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCc
Q 036903 9 DRFGPGSRIIVTTRD-------KRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNP 81 (323)
Q Consensus 9 ~~~~~gs~IlvTTR~-------~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 81 (323)
..-.+++.+|++|-. ..+.+.+. +....++..+++.++....+...+-.....- -++.+..+++.++|-+
T Consensus 102 e~p~~~~~~il~~~~~~~~~~~~k~~~~i~-sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~gdl 178 (343)
T 1jr3_D 102 GLLHDDLLLIVRGNKLSKAQENAAWFTALA-NRSVQVTCQTPEQAQLPRWVAARAKQLNLEL--DDAANQVLCYCYEGNL 178 (343)
T ss_dssp TTCBTTEEEEEEESCCCTTTTTSHHHHHHT-TTCEEEEECCCCTTHHHHHHHHHHHHTTCEE--CHHHHHHHHHSSTTCH
T ss_pred hcCCCCeEEEEEcCCCChhhHhhHHHHHHH-hCceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhchHH
Confidence 334457777776643 34555543 2446899999999999888887763322111 1345777899999988
Q ss_pred hhHHHH
Q 036903 82 LALRVL 87 (323)
Q Consensus 82 LAi~~i 87 (323)
.++...
T Consensus 179 ~~~~~e 184 (343)
T 1jr3_D 179 LALAQA 184 (343)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777653
No 192
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.26 E-value=1.4e+02 Score=25.60 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=48.1
Q ss_pred CCCceEEEEcCCh-hhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCC-CCCCChHHHHHHHHHHhcCCchhHHHHhh
Q 036903 12 GPGSRIIVTTRDK-RVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS-NCPDGLFTLSKHIVGYCKGNPLALRVLGS 89 (323)
Q Consensus 12 ~~gs~IlvTTR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~c~GlPLAi~~ig~ 89 (323)
..++.+|+||... .+...+. +....+.+++++.++..+.+...+.... ..+. ++....|++.++|.+-.+..+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~-sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIK-SQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCEEEEEeCCHHHHHHHHH-hhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 3467777777654 3322221 1236899999999999999998764322 1120 24567889999998876655443
Done!