Your job contains 1 sequence.
>036905
MEVSLRALNNNDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVN
LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE
GMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFS
QCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER
TSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSPLFLT
RAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKLKVNFDSF
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 036905
(354 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 355 8.3e-40 3
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 356 9.0e-40 3
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 355 1.2e-39 3
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 355 1.2e-39 3
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 355 1.5e-39 3
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 358 1.5e-39 3
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 356 1.5e-39 3
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 375 1.9e-39 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 354 2.0e-39 3
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 353 8.1e-39 3
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 360 8.3e-39 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 349 1.5e-38 3
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 345 3.5e-38 3
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 355 4.3e-38 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 360 5.3e-38 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 348 7.9e-38 3
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 356 8.1e-38 2
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 358 1.7e-37 2
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 350 2.0e-37 3
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 360 2.0e-37 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 360 2.0e-37 2
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 358 2.1e-37 2
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 348 2.7e-37 3
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 358 3.4e-37 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 358 3.4e-37 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 358 3.4e-37 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 358 3.4e-37 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 355 3.5e-37 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 344 3.8e-37 3
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 358 3.9e-37 2
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 355 4.4e-37 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 331 4.5e-37 3
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 345 4.7e-37 3
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 353 7.7e-37 3
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 358 1.0e-36 2
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 343 1.4e-36 3
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 336 1.5e-36 3
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 349 1.6e-36 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 348 2.8e-36 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 337 2.9e-36 3
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 358 3.5e-36 2
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 347 1.2e-35 2
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 338 3.5e-35 2
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 332 4.4e-35 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 315 1.0e-34 3
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 328 4.6e-34 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 342 6.7e-34 2
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 348 2.7e-33 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 319 8.0e-33 3
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 358 8.5e-33 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 334 1.1e-31 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 315 1.5e-30 2
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 334 3.0e-30 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 312 4.1e-30 2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 291 6.4e-30 2
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 306 1.1e-29 2
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 306 1.1e-29 2
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 276 3.3e-29 3
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 279 8.4e-29 3
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 296 1.2e-28 2
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 294 2.0e-28 2
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 314 3.9e-28 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 257 7.6e-28 2
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 287 1.1e-27 2
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 284 2.2e-27 2
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 287 2.9e-27 2
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 273 3.1e-26 2
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 294 5.2e-26 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 260 7.1e-25 2
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 224 1.6e-24 3
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 224 1.6e-24 3
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 274 6.8e-24 1
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 244 1.0e-20 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 243 1.3e-20 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 240 2.7e-20 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 237 5.7e-20 1
UNIPROTKB|F1M0P4 - symbol:F1M0P4 "Uncharacterized protein... 207 9.6e-19 2
POMBASE|SPAC343.07 - symbol:mug28 "RNA-binding protein Mu... 181 6.6e-15 3
UNIPROTKB|H0YB86 - symbol:PABPC1 "Polyadenylate-binding p... 190 1.4e-14 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 185 5.3e-14 1
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 142 5.4e-14 2
GENEDB_PFALCIPARUM|PF14_0194 - symbol:PF14_0194 "spliceos... 136 5.8e-14 2
UNIPROTKB|Q8ILQ0 - symbol:PF14_0194 "Spliceosome-associat... 136 5.8e-14 2
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 207 9.0e-14 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 192 1.5e-13 2
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 136 5.7e-13 2
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 136 5.7e-13 2
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 136 5.7e-13 2
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 136 5.7e-13 2
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 136 5.7e-13 2
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 136 5.8e-13 2
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 146 5.8e-13 2
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 195 8.7e-13 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 130 9.2e-13 2
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 132 9.6e-13 2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 136 9.9e-13 2
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 132 1.1e-12 2
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 132 1.1e-12 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 137 1.1e-12 2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 136 1.2e-12 2
WARNING: Descriptions of 742 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 355 (130.0 bits), Expect = 8.3e-40, Sum P(3) = 8.3e-40
Identities = 78/220 (35%), Positives = 125/220 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++ +
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ A + + L + NLY+KN++D +D+ +L++ F
Sbjct: 257 SGKIIFVGRAQK-KVERQAELKRKF-EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
R ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 374 RKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
Score = 295 (108.9 bits), Expect = 5.9e-33, Sum P(3) = 5.9e-33
Identities = 73/189 (38%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 137 (53.3 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F + A++AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFTNVYIKNF 198
Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPIRIMWSQ 88
Score = 79 (32.9 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 26/113 (23%), Positives = 52/113 (46%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
+A + P + +L S + L++ FS G + S +V +S GY +V +
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG-VGNVFIKNLDKSIDNKAL 115
Score = 75 (31.5 bits), Expect = 8.3e-40, Sum P(3) = 8.3e-40
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVN 350
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 528 SMLAAAPPQEQKQMLGERLFPLIQTMHSN 556
Score = 38 (18.4 bits), Expect = 8.3e-40, Sum P(3) = 8.3e-40
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 21 SLYVGDLDS 29
SLYVGDL S
Sbjct: 12 SLYVGDLHS 20
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 356 (130.4 bits), Expect = 9.0e-40, Sum P(3) = 9.0e-40
Identities = 83/224 (37%), Positives = 128/224 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM----- 251
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIEL 175
G E+ S+ GR Q+ +K + + +E + + NLY+KN++D +D+ +L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 370 RKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
Score = 293 (108.2 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 72/189 (38%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN ++VD+ L+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGEEVDDENLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 142 (55.0 bits), Expect = 3.8e-14, Sum P(3) = 3.8e-14
Identities = 33/101 (32%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F + AN+AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFTNVYIKNF 198
Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPIRIMWSQ 88
Score = 79 (32.9 bits), Expect = 3.8e-14, Sum P(3) = 3.8e-14
Identities = 26/113 (23%), Positives = 52/113 (46%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
+A + P + +L S + L++ FS G + S +V +S GY +V +
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG-VGNVFIKNLDKSIDNKAL 115
Score = 75 (31.5 bits), Expect = 9.0e-40, Sum P(3) = 9.0e-40
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVN 350
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 544 SMLAAAPPQEQKQMLGERLFPLIQTMHSN 572
Score = 38 (18.4 bits), Expect = 9.0e-40, Sum P(3) = 9.0e-40
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 21 SLYVGDLDS 29
SLYVGDL S
Sbjct: 12 SLYVGDLHS 20
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 355 (130.0 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 78/220 (35%), Positives = 124/220 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++ +
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ A + + L + NLY+KN++D +D+ +L++ F
Sbjct: 257 SGKVIFVGRAQK-KVERQAELKRKF-EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
R ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 374 RKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
Score = 295 (108.9 bits), Expect = 7.2e-33, Sum P(3) = 7.2e-33
Identities = 73/189 (38%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 137 (53.3 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F + A++AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFTNVYIKNF 198
Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPIRIMWSQ 88
Score = 79 (32.9 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 26/113 (23%), Positives = 52/113 (46%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
+A + P + +L S + L++ FS G + S +V +S GY +V +
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG-VGNVFIKNLDKSIDNKAL 115
Score = 75 (31.5 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVN 350
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 544 SMLAAAPPQEQKQMLGERLFPLIQTMHSN 572
Score = 38 (18.4 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 21 SLYVGDLDS 29
SLYVGDL S
Sbjct: 12 SLYVGDLHS 20
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 355 (130.0 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 78/220 (35%), Positives = 124/220 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++ +
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ A + + L + NLY+KN++D +D+ +L++ F
Sbjct: 257 SGKVIFVGRAQK-KVERQAELKRKF-EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
R ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 374 RKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
Score = 295 (108.9 bits), Expect = 7.2e-33, Sum P(3) = 7.2e-33
Identities = 73/189 (38%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 137 (53.3 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F + A++AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFTNVYIKNF 198
Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPIRIMWSQ 88
Score = 79 (32.9 bits), Expect = 1.5e-13, Sum P(3) = 1.5e-13
Identities = 26/113 (23%), Positives = 52/113 (46%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
+A + P + +L S + L++ FS G + S +V +S GY +V +
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG-VGNVFIKNLDKSIDNKAL 115
Score = 75 (31.5 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVN 350
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 544 SMLAAAPPQEQKQMLGERLFPLIQTMHSN 572
Score = 38 (18.4 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 21 SLYVGDLDS 29
SLYVGDL S
Sbjct: 12 SLYVGDLHS 20
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 355 (130.0 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 78/220 (35%), Positives = 125/220 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++ +
Sbjct: 197 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ A + + L + NLY+KN++D +D+ +L++ F
Sbjct: 257 SGKIIFVGRAQK-KVERQAELKRKF-EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
R ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 374 RKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
Score = 295 (108.9 bits), Expect = 8.5e-33, Sum P(3) = 8.5e-33
Identities = 73/189 (38%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 137 (53.3 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F + A++AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFTNVYIKNF 198
Score = 112 (44.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPIRIMWSQ 88
Score = 79 (32.9 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 26/113 (23%), Positives = 52/113 (46%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
+A + P + +L S + L++ FS G + S +V +S GY +V +
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG-VGNVFIKNLDKSIDNKAL 115
Score = 75 (31.5 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVN 350
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 557 SMLAAAPPQEQKQMLGERLFPLIQTMHSN 585
Score = 38 (18.4 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 21 SLYVGDLDS 29
SLYVGDL S
Sbjct: 12 SLYVGDLHS 20
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 358 (131.1 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 77/212 (36%), Positives = 121/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 374 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 403
Score = 291 (107.5 bits), Expect = 5.5e-32, Sum P(3) = 5.5e-32
Identities = 71/189 (37%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 146 (56.5 bits), Expect = 5.2e-14, Sum P(4) = 5.2e-14
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 130 (50.8 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 386
Score = 107 (42.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 74 (31.1 bits), Expect = 5.2e-14, Sum P(4) = 5.2e-14
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L++ FS G I S +V +S GY +V + A A++ + ++G +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 86
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R +++S N+++KNLD + + L
Sbjct: 87 SQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 70 (29.7 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
Score = 39 (18.8 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 21 SLYVGDL--DSTDLL 33
SLYVGDL D+T+ +
Sbjct: 12 SLYVGDLHPDATEAM 26
Score = 37 (18.1 bits), Expect = 7.9e-10, Sum P(3) = 7.9e-10
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L D TE +L
Sbjct: 12 SLYVGDLHPDATEAML 27
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 356 (130.4 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 83/224 (37%), Positives = 128/224 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 197 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM----- 251
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIEL 175
G E+ S+ GR Q+ +K + + +E + + NLY+KN++D +D+ +L
Sbjct: 252 NGKEMSGKSIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 370 RKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
Score = 293 (108.2 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 72/189 (38%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN ++VD+ L+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGEEVDDENLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 142 (55.0 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 33/101 (32%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F + AN+AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFTNVYIKNF 198
Score = 112 (44.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPIRIMWSQ 88
Score = 79 (32.9 bits), Expect = 4.6e-14, Sum P(3) = 4.6e-14
Identities = 26/113 (23%), Positives = 52/113 (46%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
+A + P + +L S + L++ FS G + S +V +S GY +V +
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG-VGNVFIKNLDKSIDNKAL 115
Score = 75 (31.5 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVN 350
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 573 SMLAAAPPQEQKQMLGERLFPLIQTMHSN 601
Score = 38 (18.4 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 21 SLYVGDLDS 29
SLYVGDL S
Sbjct: 12 SLYVGDLHS 20
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 375 (137.1 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 88/232 (37%), Positives = 128/232 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D KL +FSKFG+I S+ V+ GK KG+GFV ++ Q++A A+EKL
Sbjct: 241 FVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLND 300
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ +EG + RA + E SA Y + L + + NLYVKNI +D+++ L
Sbjct: 301 SILEGTDCKLSVCRAQKKSERSAELKRKY-EALKQERVQRYQGVNLYVKNIEEDLNDDGL 359
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ +FS G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA+AQ
Sbjct: 360 RDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQ 419
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPN 287
K +R + L Y ++ LA+ + Q+YQ PG + G +PN
Sbjct: 420 RKEDRRAQLASQYMQR---LATLRMGQQASGVPAMTQLYQ-PG-QQGYFVPN 466
Score = 268 (99.4 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 72/194 (37%), Positives = 101/194 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV +G SKGYGFV + T+ SA AIEK
Sbjct: 148 FIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEK--- 204
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ Q A +K L + + N++VKN + +D+ +L
Sbjct: 205 --VNGMLLSDKKVYVGKFQPRAQ----RMKELGESGLKYT---NVFVKNFGEHLDQEKLS 255
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP--LYVAIA 234
FS+ G I+S +M +G KGFGFV F++ D A +A+ LN + L V A
Sbjct: 256 AMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRA 315
Query: 235 QTKRERTSYLRIMY 248
Q K ER++ L+ Y
Sbjct: 316 QKKSERSAELKRKY 329
Score = 135 (52.6 bits), Expect = 4.8e-12, Sum P(3) = 4.8e-12
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ + G SKG+GFV F A AI +
Sbjct: 146 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKV 205
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L K +YV Q + +R L
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKEL 230
Score = 128 (50.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDEANRAINT 218
+LY+ +++ DV E L + FS G + S+++ R N +S G+ +V F P +A RA++T
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 219 LNGILFHQKPLYVAIAQ 235
+N + H +P+ + +Q
Sbjct: 118 MNFEVIHGRPMRIMWSQ 134
Score = 76 (31.8 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 303 GQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKLKVN 350
GQ + + +G + ++ MLA A+P E+K +LG+ +Y L++K+ N
Sbjct: 590 GQGQSGIVIHGQETLTSH--MLAQAAPQEQKQLLGERIYALIEKMFPN 635
Score = 67 (28.6 bits), Expect = 4.8e-12, Sum P(3) = 4.8e-12
Identities = 19/81 (23%), Positives = 34/81 (41%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L + FS G + S +V + S GY +V + A A++ + + G +
Sbjct: 73 LFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMW 132
Query: 129 LRAGRIQESASFNNLYVKNLD 149
+ A N+++KNLD
Sbjct: 133 SQRDPAARRAGNGNIFIKNLD 153
Score = 38 (18.4 bits), Expect = 4.0e-09, Sum P(3) = 4.0e-09
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 139 SFNNLYVKNLDDDVTEEIL 157
S +LY+ +L DV+E +L
Sbjct: 55 SMASLYIGDLHPDVSEAML 73
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 354 (129.7 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 78/220 (35%), Positives = 124/220 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++ +
Sbjct: 197 NFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ A + + L + NLY+KN++D +D+ +L++ F
Sbjct: 257 TGKVIFVGRAQK-KVERQAELKRKF-EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
R ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 374 RKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 411
Score = 294 (108.6 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
Identities = 73/189 (38%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 137 (53.3 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F + A++AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFTNVYIKNF 198
Score = 112 (44.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPIRIMWSQ 88
Score = 79 (32.9 bits), Expect = 1.6e-13, Sum P(3) = 1.6e-13
Identities = 26/113 (23%), Positives = 52/113 (46%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
+A + P + +L S + L++ FS G + S +V +S GY +V +
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSG-VGNVFIKNLDKSIDNKAL 115
Score = 75 (31.5 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVN 350
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 558 SMLAAAPPQEQKQMLGERLFPLIQTMHSN 586
Score = 38 (18.4 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 21 SLYVGDLDS 29
SLYVGDL S
Sbjct: 12 SLYVGDLHS 20
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 353 (129.3 bits), Expect = 8.1e-39, Sum P(3) = 8.1e-39
Identities = 82/229 (35%), Positives = 123/229 (53%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A A+ ++ V
Sbjct: 197 NFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEV 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G +Y + RI+ + + + + NLYVKN++D +D+ L++ F
Sbjct: 257 NGRMIYVGRAQK-RIERQGELKRKF-EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
Query: 240 RTSYLRIMY--------AKQGPGLASTNFPVH---PTLYQRALQVYQAP 277
R + L Y A GP L S P + P + Q + + +P
Sbjct: 374 RKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSP 422
Score = 275 (101.9 bits), Expect = 4.9e-30, Sum P(3) = 4.9e-30
Identities = 70/190 (36%), Positives = 108/190 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+GYGFV + TQE+A AI+
Sbjct: 102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQ---- 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
T+ GM L + G F + + L+ ++++ N+Y+KN +D+D+ L
Sbjct: 157 -TMNGMLLNDRKVFVGH------FKSRRERELEYGA--KVMEFTNVYIKNFGEDMDDKRL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G SVK+M + G S+GFGFV + N +EA +A++ +NG + + +YV AQ
Sbjct: 208 REIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER L+
Sbjct: 268 KRIERQGELK 277
Score = 156 (60.0 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+++ +D L FS G I S K++ G S+G+GFV F + ANRAI T+
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTM 158
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L + + ++V +++RER
Sbjct: 159 NGMLLNDRKVFVGHFKSRRER 179
Score = 125 (49.1 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS +G I S+KV+ ++ G SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDDRLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ L
Sbjct: 356 RIVSTKPLYV-ALAQRKEERKAILTNQYMQRL 386
Score = 109 (43.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + +P+ + +Q
Sbjct: 70 DTMNFEVIKGRPIRIMWSQ 88
Score = 69 (29.3 bits), Expect = 8.1e-39, Sum P(3) = 8.1e-39
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 310 LTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKL 347
L G + A S LA A P E+K +LG+ LYPL+ ++
Sbjct: 535 LMQGQEPLTA--SSLASAPPQEQKQMLGERLYPLIHEM 570
Score = 41 (19.5 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L DVTE +L
Sbjct: 12 SLYVGDLHPDVTEAML 27
Score = 38 (18.4 bits), Expect = 8.1e-39, Sum P(3) = 8.1e-39
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 17 GTPF-SLYVGDL--DSTDLL 33
G P SLYVGDL D T+ +
Sbjct: 7 GYPLASLYVGDLHPDVTEAM 26
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 360 (131.8 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 77/212 (36%), Positives = 122/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 29 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 88
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 89 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 146
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 147 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 205
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 206 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 235
Score = 180 (68.4 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+Y+KN +D+D+ LK+ F + G SVK+M G SKGFGFV F ++A +A++ +
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG + K +YV AQ K ER + L+
Sbjct: 84 NGKELNGKQIYVGRAQKKVERQTELK 109
Score = 130 (50.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 129 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 187
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 188 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 218
Score = 71 (30.1 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 381 SMLASAPPQEQKQMLGERLFPLIQSM 406
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 349 (127.9 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 71/196 (36%), Positives = 116/196 (59%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L ++FSK+G S KV+ GKSKG+GFV + E A A+E++ +
Sbjct: 197 NFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDI 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ A + + L + NLY+KN++D +D+ +L++ F
Sbjct: 257 NGKMVFVGRAQK-KVERQAELKRRF-EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGL 255
R ++L Y ++ G+
Sbjct: 374 RKAHLTNQYMQRIAGM 389
Score = 290 (107.1 bits), Expect = 6.6e-32, Sum P(3) = 6.6e-32
Identities = 72/189 (38%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGDDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M G SKGFGFV F ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 144 (55.7 bits), Expect = 1.0e-13, Sum P(4) = 1.0e-13
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F D A+RAI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFTNVYIKNF 198
Score = 111 (44.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPIRIMWSQ 88
Score = 73 (30.8 bits), Expect = 1.0e-13, Sum P(4) = 1.0e-13
Identities = 22/90 (24%), Positives = 43/90 (47%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L++ FS G + S +V +S GY +V + A A++ + ++G +
Sbjct: 27 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 86
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R +++S N+++KNLD + + L
Sbjct: 87 SQRDPSLRKSG-VGNVFIKNLDKSIDNKAL 115
Score = 72 (30.4 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 544 SMLAAAPPQEQKQMLGERLFPLIQAM 569
Score = 41 (19.5 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L DVTE +L
Sbjct: 12 SLYVGDLHPDVTEAML 27
Score = 37 (18.1 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 12 DSAILGTPF-SLYVGDL--DSTDLL 33
D+A P SLYVGDL D T+ +
Sbjct: 2 DAAGSSYPMASLYVGDLHPDVTEAM 26
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 345 (126.5 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 71/192 (36%), Positives = 111/192 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +IFS+FG S KV++ G+SKG+GFV + E A A+ + +
Sbjct: 197 NFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEI 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G +Y + R++ + + + + + NLYVKN++D +D+ L++ F
Sbjct: 257 NGRMVYVGRAQK-RLERQSELKRKF-EQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQ 251
R + L Y ++
Sbjct: 374 RKAILTNQYMQR 385
Score = 281 (104.0 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 69/189 (36%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G S+G+GFV + TQE+A AI+ +
Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R + A F + + T N+Y+KN DD+D+ L+
Sbjct: 161 MLLNDRKVFVGHFKS-RKEREAEFGARAM-----EFT------NVYIKNFGDDMDDNRLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M + G SKGFGFV F +EA +A+ +NG + + +YV AQ
Sbjct: 209 EIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER S L+
Sbjct: 269 RLERQSELK 277
Score = 147 (56.8 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++D +D L FS G I S K++ G S+G GFV F + A RAI T+
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTM 158
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L + + ++V ++++ER
Sbjct: 159 NGMLLNDRKVFVGHFKSRKER 179
Score = 126 (49.4 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS +G I S+KV+ ++ G SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ L
Sbjct: 356 RIVSTKPLYV-ALAQRKEERKAILTNQYMQRL 386
Score = 105 (42.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 25/78 (32%), Positives = 46/78 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAIN 217
+LYV +++ DV E L + FS G I S+++ R +R S G+ ++ F P +A RA++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRR-SLGYAYINFQQPADAERALD 70
Query: 218 TLNGILFHQKPLYVAIAQ 235
T+N + +P+ + +Q
Sbjct: 71 TMNFEVIKGRPVRIMWSQ 88
Score = 72 (30.4 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 322 SMLAVASPDERKDILGQGLYPLV 344
SMLA A P E+K ++G+ LYPL+
Sbjct: 547 SMLAAAPPQEQKQMIGERLYPLI 569
Score = 41 (19.5 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L DVTE +L
Sbjct: 12 SLYVGDLHPDVTEAML 27
Score = 38 (18.4 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 17 GTPF-SLYVGDL--DSTDLL 33
G P SLYVGDL D T+ +
Sbjct: 7 GYPLASLYVGDLHPDVTEAM 26
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 355 (130.0 bits), Expect = 4.3e-38, Sum P(2) = 4.3e-38
Identities = 78/220 (35%), Positives = 125/220 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++ +
Sbjct: 99 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 158
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ A + + L + NLY+KN++D +D+ +L++ F
Sbjct: 159 SGKIIFVGRAQK-KVERQAELKRKF-EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 216
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 217 SPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 275
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
R ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 276 RKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 313
Score = 295 (108.9 bits), Expect = 4.1e-31, Sum P(2) = 4.1e-31
Identities = 73/189 (38%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 4 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 62
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN ++VD+ LK
Sbjct: 63 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGEEVDDESLK 110
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 111 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 170
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 171 KVERQAELK 179
Score = 137 (53.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F + A++AI +
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFTNVYIKNF 100
Score = 75 (31.5 bits), Expect = 4.3e-38, Sum P(2) = 4.3e-38
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVN 350
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 463 SMLAAAPPQEQKQMLGERLFPLIQTMHSN 491
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 360 (131.8 bits), Expect = 5.3e-38, Sum P(2) = 5.3e-38
Identities = 77/212 (36%), Positives = 122/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 133 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 192
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 193 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 250
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 251 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 309
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 310 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 339
Score = 293 (108.2 bits), Expect = 2.3e-30, Sum P(2) = 2.3e-30
Identities = 71/189 (37%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 38 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 96
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 97 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 144
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 145 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 204
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 205 KVERQTELK 213
Score = 146 (56.5 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 134
Score = 130 (50.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 233 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 292 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 322
Score = 71 (30.1 bits), Expect = 5.3e-38, Sum P(2) = 5.3e-38
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 485 SMLASAPPQEQKQMLGERLFPLIQSM 510
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 348 (127.6 bits), Expect = 7.9e-38, Sum P(3) = 7.9e-38
Identities = 72/192 (37%), Positives = 111/192 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A A+ ++ V
Sbjct: 197 NFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEV 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G +Y + RI+ + + + + + NLYVKN++D +D+ L++ F
Sbjct: 257 NGRMIYVGRAQK-RIERQSELKRKF-EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 LPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQ 251
R + L Y ++
Sbjct: 374 RKAILTNQYMQR 385
Score = 274 (101.5 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 70/190 (36%), Positives = 108/190 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+GYGFV + T E+A AI+
Sbjct: 102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQ---- 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
T+ GM L + G F + + L+ ++++ N+Y+KN +D+D+ L
Sbjct: 157 -TMNGMLLNDRKVFVGH------FKSRRERELEYGA--KVMEFTNVYIKNFGEDMDDKRL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G SVK+M + G S+GFGFV + N +EA +A++ +NG + + +YV AQ
Sbjct: 208 REIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER S L+
Sbjct: 268 KRIERQSELK 277
Score = 155 (59.6 bits), Expect = 8.3e-11, Sum P(3) = 8.3e-11
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+++ +D L FS G I S K++ G S+G+GFV F + ANRAI T+
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTM 158
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L + + ++V +++RER
Sbjct: 159 NGMLLNDRKVFVGHFKSRRER 179
Score = 119 (46.9 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 30/92 (32%), Positives = 50/92 (54%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + F +G I S+KV+ ++ G SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDDRLRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ L
Sbjct: 356 RIVSTKPLYV-ALAQRKEERKAILTNQYMQRL 386
Score = 106 (42.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LY+ +++ DV E L + FS G I S+++ R T R +S + ++ F P +A RA+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLS--YAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + +P+ + +Q
Sbjct: 70 DTMNFEVIKGRPIRIMWSQ 88
Score = 66 (28.3 bits), Expect = 7.9e-38, Sum P(3) = 7.9e-38
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 310 LTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKL 347
L G + A S+LA A P E+K +LG+ +YP++ ++
Sbjct: 535 LMQGQEPLTA--SLLAGAPPQEQKQMLGERIYPVIHEM 570
Score = 40 (19.1 bits), Expect = 8.3e-11, Sum P(3) = 8.3e-11
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LY+ +L DVTE +L
Sbjct: 12 SLYIGDLHPDVTEAML 27
Score = 37 (18.1 bits), Expect = 7.9e-38, Sum P(3) = 7.9e-38
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 17 GTPF-SLYVGDL--DSTDLL 33
G P SLY+GDL D T+ +
Sbjct: 7 GYPLASLYIGDLHPDVTEAM 26
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 356 (130.4 bits), Expect = 8.1e-38, Sum P(2) = 8.1e-38
Identities = 83/224 (37%), Positives = 128/224 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 126 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM----- 180
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIEL 175
G E+ S+ GR Q+ +K + + +E + + NLY+KN++D +D+ +L
Sbjct: 181 NGKEMSGKSIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 240 RKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 299 RKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 340
Score = 293 (108.2 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 72/189 (38%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 31 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNG 89
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN ++VD+ L+
Sbjct: 90 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGEEVDDENLR 137
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 138 ELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 197
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 198 KVERQAELK 206
Score = 142 (55.0 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 33/101 (32%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F + AN+AI +
Sbjct: 29 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKM 87
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFTNVYIKNF 127
Score = 75 (31.5 bits), Expect = 8.1e-38, Sum P(2) = 8.1e-38
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVN 350
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 501 SMLAAAPPQEQKQMLGERLFPLIQTMHSN 529
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 358 (131.1 bits), Expect = 1.7e-37, Sum P(2) = 1.7e-37
Identities = 77/212 (36%), Positives = 121/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 152 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 211
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 212 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 269
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 270 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 328
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 329 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 358
Score = 291 (107.5 bits), Expect = 6.0e-30, Sum P(2) = 6.0e-30
Identities = 71/189 (37%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 57 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 115
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 116 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 163
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 164 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 223
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 224 KVERQTELK 232
Score = 146 (56.5 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 113
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 114 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 153
Score = 130 (50.8 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 252 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 310
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 311 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 341
Score = 70 (29.7 bits), Expect = 1.7e-37, Sum P(2) = 1.7e-37
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 503 SMLASAPPQEQKQMLGERLFPLIQAM 528
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 350 (128.3 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
Identities = 77/214 (35%), Positives = 119/214 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D +L +FS+FG + S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G LY + R++ + + D +T NLYVKN++D +D+ +L+
Sbjct: 254 REVSGRLLYVGRAQK-RVERQNELKRRFEQMKQDRLTR-YQGVNLYVKNLDDSIDDEKLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRA 270
K ER + L Y ++ + + P+ + Q A
Sbjct: 371 KEERKAILTNQYMQRLSTMRALGGPILGSFQQPA 404
Score = 280 (103.6 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 72/189 (38%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T E+A NAI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E L + ++ T N+YVKN++ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREV----ELGARAME--FT------NIYVKNLHVDVDEQRLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR + G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 152 (58.6 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ D +D L FS G I S K++ G S+GFGFV F + A AI+T+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTM 158
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L + + ++V +++RER
Sbjct: 159 NGMLLNDRKVFVGHFKSRRER 179
Score = 107 (42.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + +P+ + +Q
Sbjct: 70 DTMNFEVIKGQPIRIMWSQ 88
Score = 58 (25.5 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 322 SMLAVASPDERKDILGQGLYPLV 344
SMLA A E+K ++G+ L+PLV
Sbjct: 537 SMLAAAPLHEQKQMIGERLFPLV 559
Score = 41 (19.5 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L DVTE +L
Sbjct: 12 SLYVGDLHPDVTEAML 27
Score = 38 (18.4 bits), Expect = 2.0e-37, Sum P(3) = 2.0e-37
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 17 GTPF-SLYVGDL--DSTDLL 33
G P SLYVGDL D T+ +
Sbjct: 7 GYPLASLYVGDLHPDVTEAM 26
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 360 (131.8 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
Identities = 77/212 (36%), Positives = 122/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 374 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 403
Score = 293 (108.2 bits), Expect = 5.5e-30, Sum P(2) = 5.5e-30
Identities = 71/189 (37%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 146 (56.5 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 130 (50.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 386
Score = 111 (44.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 77 (32.2 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 70 (29.7 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 360 (131.8 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
Identities = 77/212 (36%), Positives = 122/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 374 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 403
Score = 293 (108.2 bits), Expect = 5.5e-30, Sum P(2) = 5.5e-30
Identities = 71/189 (37%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 146 (56.5 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 130 (50.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 386
Score = 111 (44.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 77 (32.2 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 70 (29.7 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 358 (131.1 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 77/212 (36%), Positives = 121/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 165 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 224
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 225 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 282
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 283 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 341
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 342 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 371
Score = 235 (87.8 bits), Expect = 6.5e-21, Sum P(2) = 6.5e-21
Identities = 58/166 (34%), Positives = 93/166 (56%)
Query: 80 IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESAS 139
++ S VV ++G SKGYGFV + TQE+A AIEK+ + +++ ++ + +E+
Sbjct: 93 LRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA-- 149
Query: 140 FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK 199
L + +E N+Y+KN +D+D+ LK F + G SVK+M G SK
Sbjct: 150 --ELGAR------AKEFT--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK 199
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
GFGFV F ++A +A++ +NG + K +YV AQ K ER + L+
Sbjct: 200 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 245
Score = 130 (50.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 265 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 323
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 324 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 354
Score = 111 (44.1 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 70 (29.7 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 516 SMLASAPPQEQKQMLGERLFPLIQAM 541
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 348 (127.6 bits), Expect = 2.7e-37, Sum P(3) = 2.7e-37
Identities = 76/212 (35%), Positives = 118/212 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G LY + R++ + + + L D NLYVKN++D +D+ +L+
Sbjct: 254 KEVSGRLLYVGRAQK-RVERQSELKRRF-EQLKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQ 268
K ER + L Y ++ + + P+ + +Q
Sbjct: 371 KEERKAILTNQYMQRLSTVRALGGPLLGSFHQ 402
Score = 268 (99.4 bits), Expect = 2.3e-28, Sum P(3) = 2.3e-28
Identities = 71/189 (37%), Positives = 105/189 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E L + ++ T N+YVKN++ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREV----ELGARAME--FT------NIYVKNLHVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G + SVK+MR + G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 209 DLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER S L+
Sbjct: 269 RVERQSELK 277
Score = 153 (58.9 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ D +D L FS G I S K++ + G S+GFGFV F + A +AI T+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTM 158
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L + + ++V +++RER
Sbjct: 159 NGMLLNDRKVFVGHFKSRRER 179
Score = 107 (42.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + +P+ + +Q
Sbjct: 70 DTMNFEVIKGQPIRIMWSQ 88
Score = 61 (26.5 bits), Expect = 2.7e-37, Sum P(3) = 2.7e-37
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 322 SMLAVASPDERKDILGQGLYPLV 344
SMLA A E+K ++G+ LYPL+
Sbjct: 573 SMLAAAPLHEQKQMIGERLYPLI 595
Score = 41 (19.5 bits), Expect = 4.0e-10, Sum P(3) = 4.0e-10
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L DVTE +L
Sbjct: 12 SLYVGDLHPDVTEAML 27
Score = 38 (18.4 bits), Expect = 2.7e-37, Sum P(3) = 2.7e-37
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 17 GTPF-SLYVGDL--DSTDLL 33
G P SLYVGDL D T+ +
Sbjct: 7 GFPLASLYVGDLHPDVTEAM 26
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 358 (131.1 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 77/212 (36%), Positives = 121/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 374 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 403
Score = 291 (107.5 bits), Expect = 9.1e-30, Sum P(2) = 9.1e-30
Identities = 71/189 (37%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 146 (56.5 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 130 (50.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 386
Score = 111 (44.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 77 (32.2 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 70 (29.7 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 358 (131.1 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 77/212 (36%), Positives = 121/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 374 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 403
Score = 291 (107.5 bits), Expect = 9.1e-30, Sum P(2) = 9.1e-30
Identities = 71/189 (37%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 146 (56.5 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 130 (50.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 386
Score = 111 (44.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 77 (32.2 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 70 (29.7 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 358 (131.1 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 77/212 (36%), Positives = 121/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 374 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 403
Score = 291 (107.5 bits), Expect = 9.1e-30, Sum P(2) = 9.1e-30
Identities = 71/189 (37%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 146 (56.5 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 130 (50.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 386
Score = 111 (44.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 77 (32.2 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 70 (29.7 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 358 (131.1 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 77/212 (36%), Positives = 121/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 374 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 403
Score = 291 (107.5 bits), Expect = 9.1e-30, Sum P(2) = 9.1e-30
Identities = 71/189 (37%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 146 (56.5 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 130 (50.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 386
Score = 111 (44.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 77 (32.2 bits), Expect = 7.0e-14, Sum P(3) = 7.0e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 70 (29.7 bits), Expect = 3.4e-37, Sum P(2) = 3.4e-37
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 355 (130.0 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 77/212 (36%), Positives = 123/212 (58%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ KL IFSK+G+ S +V+ ++GKS+G+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEM 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G +Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKLIYVGRAQK-KVERQTELKRKFEQMKQDRMTR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGTITSAKVMMDG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 374 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 403
Score = 292 (107.8 bits), Expect = 3.4e-30, Sum P(2) = 3.4e-30
Identities = 70/189 (37%), Positives = 109/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ +LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDDKLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G S+++M G S+GFGFV F ++A RA++ +NG + K +YV AQ
Sbjct: 209 DIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 146 (56.5 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 128 (50.1 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 386
Score = 111 (44.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + +P+ + +Q
Sbjct: 70 DTMNFDVIKGRPVRIMWSQ 88
Score = 77 (32.2 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 73 (30.8 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 546 SMLAAAPPQEQKQMLGERLFPLIQNM 571
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 344 (126.2 bits), Expect = 3.8e-37, Sum P(3) = 3.8e-37
Identities = 81/219 (36%), Positives = 130/219 (59%)
Query: 51 TPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALN 109
TP F V NL I +L + F KFG I S+ V+ Q G S+ +GFV + E+A +
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNI 166
A+EK+ G+ L L GR Q+ + + + + E+ NLY+KN+
Sbjct: 285 AVEKM-----NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
+D VD+ +LK+ FS+ G ++S K+M +G+S+GFGFV +SNP+EA RA++ +NG + +
Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGR 399
Query: 227 KPLYVAIAQTKRERTSYLRIMYAK-QGPGLASTNFPVHP 264
KPLY+A+AQ K +R ++L+ ++++ + PG S F HP
Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIRAPGPMS-GFH-HP 436
Score = 281 (104.0 bits), Expect = 3.9e-30, Sum P(3) = 3.9e-30
Identities = 74/195 (37%), Positives = 103/195 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L + FS FG I S KV + G+SKGYGFVQ+ +ESA AI+KL
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ R QE A D+ T N+YVKN+ ++ E EL+
Sbjct: 199 MLMNDKQVFVGHFI--RRQERAR----------DENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G+ISS +MR G S+ FGFV F + A A+ +NGI LYV AQ
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 237 KRERTSYLRIMYAKQ 251
K ER LR + ++
Sbjct: 307 KSEREEELRRKFEQE 321
Score = 141 (54.7 bits), Expect = 4.3e-09, Sum P(3) = 4.3e-09
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L + FS G I S K+ G SKG+GFV F + A AI+ L
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L + K ++V ++ER
Sbjct: 197 NGMLMNDKQVFVGHFIRRQER 217
Score = 102 (41.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+ +LY +++ V E L F + SV++ R S G+ ++ FSNP++A RA+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAME 107
Query: 218 TLNGILFHQKPLYVAIA 234
LN +P+ + ++
Sbjct: 108 ALNYTPLFDRPIRIMLS 124
Score = 66 (28.3 bits), Expect = 3.8e-37, Sum P(3) = 3.8e-37
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKK 346
S LA ASP +R +LG+ LYPLV++
Sbjct: 577 SSLASASPADRTRMLGEQLYPLVER 601
Score = 40 (19.1 bits), Expect = 4.3e-09, Sum P(3) = 4.3e-09
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 141 NNLYVKNLDDDVTE-EILDKNLYVKNI 166
++LY +LD VTE + D +V N+
Sbjct: 49 SSLYAGDLDPKVTEAHLFDLFKHVANV 75
Score = 37 (18.1 bits), Expect = 3.8e-37, Sum P(3) = 3.8e-37
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 21 SLYVGDLD 28
SLY GDLD
Sbjct: 50 SLYAGDLD 57
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 358 (131.1 bits), Expect = 3.9e-37, Sum P(2) = 3.9e-37
Identities = 77/212 (36%), Positives = 121/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 374 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 403
Score = 291 (107.5 bits), Expect = 9.9e-30, Sum P(2) = 9.9e-30
Identities = 71/189 (37%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 146 (56.5 bits), Expect = 7.5e-14, Sum P(3) = 7.5e-14
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 130 (50.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 386
Score = 111 (44.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 77 (32.2 bits), Expect = 7.5e-14, Sum P(3) = 7.5e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 70 (29.7 bits), Expect = 3.9e-37, Sum P(2) = 3.9e-37
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 559 SMLASAPPQEQKQMLGERLFPLIQAM 584
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 355 (130.0 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 78/220 (35%), Positives = 124/220 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++ +
Sbjct: 237 NFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 296
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ A + + L + NLY+KN++D +D+ +L++ F
Sbjct: 297 SGKVIFVGRAQK-KVERQAELKRKF-EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEF 354
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 355 SPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 413
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
R ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 414 RKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 451
Score = 295 (108.9 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 73/189 (38%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 142 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 200
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN ++VD+ LK
Sbjct: 201 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGEEVDDESLK 248
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 249 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 308
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 309 KVERQAELK 317
Score = 137 (53.3 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F + A++AI +
Sbjct: 140 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 198
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 199 NGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFTNVYIKNF 238
Score = 75 (31.5 bits), Expect = 4.4e-37, Sum P(2) = 4.4e-37
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVN 350
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 613 SMLAAAPPQEQKQMLGERLFPLIQTMHSN 641
Score = 45 (20.9 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 19/85 (22%), Positives = 40/85 (47%)
Query: 74 FSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP-SLRAG 132
F K G + K V Q + + + ++T +A A++ + ++G + S R
Sbjct: 74 FEKQGSSKLEKAEVLQ--MTVDHLKMLHATGGTAERALDTMNFDVIKGKPIRIMWSQRDP 131
Query: 133 RIQESASFNNLYVKNLDDDVTEEIL 157
+++S N+++KNLD + + L
Sbjct: 132 SLRKSG-VGNVFIKNLDKSIDNKAL 155
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 331 (121.6 bits), Expect = 4.5e-37, Sum P(3) = 4.5e-37
Identities = 72/222 (32%), Positives = 127/222 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ ++ + +L+++F +FG S ++ +GKSKG+GFV + + A A++ L
Sbjct: 227 YVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T + E + + + + + ++L + ++ NLYVKN+++ V + +L+
Sbjct: 287 KTFDDKEWFVGKAQK-KSERETELKQKFEQSLKE-AADKSQGSNLYVKNLDESVTDDKLR 344
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
++F+ G I+S K+MR G+S+G GFV FS P+EA RAI +NG + KPLYVA+AQ
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQR 404
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPG 278
K +R + L+ +++ P N P P + R +Q+Y PG
Sbjct: 405 KEDRKARLQAQFSQMRP----VNMP--PAVGPR-MQMYP-PG 438
Score = 323 (118.8 bits), Expect = 3.5e-36, Sum P(3) = 3.5e-36
Identities = 80/190 (42%), Positives = 107/190 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ LH+ FS FG I S KV V G+SKGYGFVQY T E+A AI+KL
Sbjct: 136 FIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKL-- 193
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT-EEILDKNLYVKNINDDVDEIEL 175
GM L + G +V L D + E++ N+YVKN+++ + + EL
Sbjct: 194 ---NGMLLNDKQVYVGP----------FVHKLQRDPSGEKVKFTNVYVKNLSESLSDEEL 240
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F + G+ +S IMR G SKGFGFV F N D+A RA++ LNG F K +V AQ
Sbjct: 241 NKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQ 300
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 301 KKSERETELK 310
Score = 136 (52.9 bits), Expect = 6.5e-17, Sum P(4) = 6.5e-17
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L + FS G I S K+ G SKG+GFV + + A AI+ L
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L + K +YV K +R
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQR 214
Score = 108 (43.1 bits), Expect = 6.5e-17, Sum P(4) = 6.5e-17
Identities = 27/100 (27%), Positives = 54/100 (54%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAAT 118
+L +T+ + +L + F++ G + S +V + S GYG+V Y+T + A A+ +L
Sbjct: 51 DLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMA 110
Query: 119 VEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
+ G + S+R +++S N+++KNLD + + L
Sbjct: 111 LNGRAIRVMYSVRDPSLRKSG-VGNIFIKNLDKSIDHKAL 149
Score = 108 (43.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAIN 217
+LYV +++ V + +L + F+Q G + SV++ R T R S G+G+V ++ P +A+RA+N
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRR-SLGYGYVNYATPQDASRALN 104
Query: 218 TLNGILFHQKPLYV 231
LN + + + + V
Sbjct: 105 ELNFMALNGRAIRV 118
Score = 69 (29.3 bits), Expect = 4.5e-37, Sum P(3) = 4.5e-37
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 324 LAVASPDERKDILGQGLYPLVKKLK 348
LA A+P++++ +LG+ LYPLV++L+
Sbjct: 581 LANAAPEQQRTMLGENLYPLVEQLE 605
Score = 48 (22.0 bits), Expect = 4.5e-37, Sum P(3) = 4.5e-37
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 17 GTPFSLYVGDLDST 30
GT SLYVGDLD+T
Sbjct: 43 GTT-SLYVGDLDAT 55
Score = 42 (19.8 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A+ AA A + AG Q+ + +LYV +LD VT+ L
Sbjct: 16 AVPGAAAAEAAAAAAGAAAAAAGAAQQGTT--SLYVGDLDATVTDSQL 61
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 345 (126.5 bits), Expect = 4.7e-37, Sum P(3) = 4.7e-37
Identities = 75/196 (38%), Positives = 119/196 (60%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L+ +F +FG + S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE--ILDK--NLYVKNINDDVDEIEL 175
G +Y G Q+ ++ +K + VT++ I + NLYVKN++D +D+ L
Sbjct: 257 NGKHIYV-----GPAQKKVD-RHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A++ +NG + KPLYVA+AQ
Sbjct: 311 QKEFSPFGTITSTKVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER ++L Y ++
Sbjct: 370 RKEERQAHLTNQYIQR 385
Score = 276 (102.2 bits), Expect = 2.5e-29, Sum P(3) = 2.5e-29
Identities = 68/184 (36%), Positives = 104/184 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ FS FG+I S KVV ++G SKG+GFV + T+E+A AIEK+
Sbjct: 102 FIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + T+E N+Y+KN D +D+ L
Sbjct: 161 MLLNDRKVFVGQFKSRKEREA----ELGTR------TKEFT--NVYIKNFGDRMDDKTLN 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G + SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 GLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQK 268
Query: 237 KRER 240
K +R
Sbjct: 269 KVDR 272
Score = 143 (55.4 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+N +D L FS G I S K++ G SKG GFV F + A RAI +
Sbjct: 100 NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 159 NGMLLNDRKVFVGQFKSRKEREAEL 183
Score = 133 (51.9 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV+ ++ G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLQKEFSPFGTITSTKVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYIQRM 386
Score = 107 (42.7 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSL--GYASVNFEQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 54 (24.1 bits), Expect = 4.7e-37, Sum P(3) = 4.7e-37
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
S L A P E+K +LG+ L+PL++ +
Sbjct: 543 STLGTA-PQEQKQMLGERLFPLIQAM 567
Score = 45 (20.9 bits), Expect = 4.7e-37, Sum P(3) = 4.7e-37
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 8 LNNNDSAILGTPF-SLYVGDL--DSTDLL---RLCSA-LIASIDVHSAMATPTFIPF-TV 59
+N++D G P SLYVGDL D T+ + + SA I SI V+ + T + + +V
Sbjct: 1 MNSSDP---GCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASV 57
Query: 60 NLASTID 66
N D
Sbjct: 58 NFEQPAD 64
Score = 41 (19.5 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L DVTE +L
Sbjct: 12 SLYVGDLHPDVTEAML 27
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 353 (129.3 bits), Expect = 7.7e-37, Sum P(3) = 7.7e-37
Identities = 81/215 (37%), Positives = 123/215 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG QS KV+ +G+S+G+GF+ + E A A++ +
Sbjct: 194 YVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ A N +K + + +E ++ NLYVKN++D +++
Sbjct: 254 KEVSGQLLYV-----GRAQKRAERQN-ELKRRFEQMKQERQNRYQGVNLYVKNLDDSIND 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ FS G+I+S K+M T SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 DRLKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLY 267
+AQ K ER + L Y ++ ++F PT Y
Sbjct: 367 LAQRKEERKAILTNQYRRRLSRSVLSSFQ-QPTSY 400
Score = 275 (101.9 bits), Expect = 5.6e-28, Sum P(3) = 5.6e-28
Identities = 70/189 (37%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + L T N+YVKN+ D+DE L+
Sbjct: 161 MLLNDRKVFVGHFKSRQKREA----ELGARALG--FT------NIYVKNLRVDMDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G SVK+MR + G S+GFGF+ F +EA +A++ +NG + LYV AQ
Sbjct: 209 DLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RAERQNELK 277
Score = 150 (57.9 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 30/85 (35%), Positives = 53/85 (62%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ + +D L FS G I S K++ G S+GFGFV F + A +AINT+
Sbjct: 100 NIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V +++++R + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAEL 183
Score = 47 (21.6 bits), Expect = 7.7e-37, Sum P(3) = 7.7e-37
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 322 SMLAVASPDERKDILGQGLYPLV 344
SML A E+K ++G+ LY L+
Sbjct: 529 SMLDAAPLHEQKQMIGERLYSLI 551
Score = 46 (21.3 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 139 SFNNLYVKNLDDDVTEEIL 157
S ++LYV +L DVTE +L
Sbjct: 9 SLSSLYVGDLHPDVTEAML 27
Score = 39 (18.8 bits), Expect = 7.7e-37, Sum P(3) = 7.7e-37
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 21 SLYVGDL--DSTD--LLRLCSAL--IASIDVHSAMATPTFIPFT-VNLASTID 66
SLYVGDL D T+ L + S + I SI V +AT + + +N D
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPAD 64
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 358 (131.1 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 83/229 (36%), Positives = 125/229 (54%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A A+ ++ V
Sbjct: 197 NFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEV 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G +Y + RI+ + + + + NLYVKN++D +D+ L++ F
Sbjct: 257 NGRMVYVGRAQK-RIERQGELKRKF-EQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
Query: 240 RTSYLRIMY--------AKQGPGLASTNFPVH---PTLYQRALQVYQAP 277
R + L Y A GP L S P + PT+ Q + + + +P
Sbjct: 374 RKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSP 422
Score = 284 (105.0 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 73/190 (38%), Positives = 107/190 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FGDI S KVV + G S+GYGFV + TQE+A AI+
Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQ---- 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
T+ GM L + G F + + L+ ++++ N+Y+KN +D+D+ L
Sbjct: 157 -TMNGMLLNDRKVFVGH------FKSRRERELEYGA--KVMEFTNVYIKNFGEDMDDKRL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ FS G SVK+M N G S+GFGFV + N +EA +A+ +NG + + +YV AQ
Sbjct: 208 KEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER L+
Sbjct: 268 KRIERQGELK 277
Score = 158 (60.7 bits), Expect = 4.7e-11, Sum P(3) = 4.7e-11
Identities = 32/81 (39%), Positives = 52/81 (64%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++D +D L FS G I S K++ G S+G+GFV F + ANRAI T+
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTM 158
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L + + ++V +++RER
Sbjct: 159 NGMLLNDRKVFVGHFKSRRER 179
Score = 125 (49.1 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS +G I S+KV+ ++ G SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDDRLRKEFSPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ L
Sbjct: 356 RIVSTKPLYV-ALAQRKEERKAILTNQYMQRL 386
Score = 108 (43.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LY+ +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + +P+ + +Q
Sbjct: 70 DTMNFEVIKGRPIRIMWSQ 88
Score = 65 (27.9 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 310 LTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKL 347
L G + A S+LA A E+K ILG+ +YPL+ ++
Sbjct: 535 LMQGQEPLTA--SLLAAAPLQEQKQILGERIYPLIHEM 570
Score = 40 (19.1 bits), Expect = 4.7e-11, Sum P(3) = 4.7e-11
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LY+ +L DVTE +L
Sbjct: 12 SLYIGDLHPDVTEAML 27
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 343 (125.8 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 77/212 (36%), Positives = 118/212 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG I S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G LY + R++ + + D +T NLYVKN++D +D+ +L+
Sbjct: 254 KEVSGRLLYVGRAQK-RVERQNELKRRFEQMKQDRLTR-YQGVNLYVKNLDDSIDDEKLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F+ G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFAPYGMITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQ 268
K ER + L Y ++ + + P+ +L Q
Sbjct: 371 KEERKAILTNQYIQRLSTMRALGSPLLGSLQQ 402
Score = 281 (104.0 bits), Expect = 1.4e-29, Sum P(3) = 1.4e-29
Identities = 73/189 (38%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV G S+G+GFV + T E+A NAI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ T N+YVKN++ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALE--FT------NIYVKNLHVDVDERCLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G I SVK+MR + G S+GFGFV F ++A +A+ +NG + LYV AQ
Sbjct: 209 DLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 153 (58.9 bits), Expect = 8.0e-10, Sum P(3) = 8.0e-10
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ D +D L FS G I S K++ + G S+GFGFV F + A AI T+
Sbjct: 100 NVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V +++RER + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAEL 183
Score = 107 (42.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + +P+ + +Q
Sbjct: 70 DTMNFEVIKGQPIRIMWSQ 88
Score = 57 (25.1 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 322 SMLAVASPDERKDILGQGLYPLV 344
S+LA A E+K ++G+ LYPL+
Sbjct: 532 SVLAAAPLHEQKQMIGERLYPLI 554
Score = 41 (19.5 bits), Expect = 8.0e-10, Sum P(3) = 8.0e-10
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L DVTE +L
Sbjct: 12 SLYVGDLHPDVTEAML 27
Score = 38 (18.4 bits), Expect = 1.4e-36, Sum P(3) = 1.4e-36
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 17 GTPF-SLYVGDL--DSTDLL 33
G P SLYVGDL D T+ +
Sbjct: 7 GYPLASLYVGDLHPDVTEAM 26
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 336 (123.3 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 82/193 (42%), Positives = 106/193 (54%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ LH FS FG+I S KV V G+SKGYGFVQY+ +ESA AIEKL
Sbjct: 127 FIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 186
Query: 117 ATVEGMELYA-PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ ++Y P LR QE D + N+YVKN+ + + +L
Sbjct: 187 MLLNDKQVYVGPFLRR---QER------------DSTANKTKFTNVYVKNLAESTTDDDL 231
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F + G I+S +M+ G SKGFGFV F N D+A RA+ +LNG F K YV AQ
Sbjct: 232 KNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQ 291
Query: 236 TKRERTSYLRIMY 248
K ER + LR+ Y
Sbjct: 292 KKSERETELRVRY 304
Score = 318 (117.0 bits), Expect = 1.6e-34, Sum P(3) = 1.6e-34
Identities = 71/198 (35%), Positives = 110/198 (55%)
Query: 57 FTVNLA-STIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ NLA ST D+ L F ++G I S+ V+ +GKSKG+GFV + + A A+E L
Sbjct: 218 YVKNLAESTTDD-DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ E Y + + + Y +NL + ++ NLYVKN++ + + +L
Sbjct: 277 GHKFDDKEWYVGRAQK-KSERETELRVRYEQNLKE-AADKFQSSNLYVKNLDPSISDEKL 334
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ FS G ++S K+MR G SKG GFV F+ P+EA A++ L+G + KPLYVAIAQ
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394
Query: 236 TKRERTSYLRIMYAKQGP 253
K +R L+ +++ P
Sbjct: 395 RKEDRRVRLQAQFSQVRP 412
Score = 159 (61.0 bits), Expect = 4.5e-17, Sum P(3) = 4.5e-17
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+++ +D L FS G I S K+ + G SKG+GFV ++N + A +AI L
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 220 NGILFHQKPLYVAIAQTKRERTS 242
NG+L + K +YV ++ER S
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDS 207
Score = 117 (46.2 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V + +L F Q G + +V++ R T R + G+G+V F+NP +A RAI
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSL--GYGYVNFTNPQDAARAI 94
Query: 217 NTLNGILFHQKPLYV 231
LN I + KP+ V
Sbjct: 95 QELNYIPLYGKPIRV 109
Score = 100 (40.3 bits), Expect = 4.5e-17, Sum P(3) = 4.5e-17
Identities = 35/127 (27%), Positives = 60/127 (47%)
Query: 37 SALIASIDVHSAMATPTFIPFTVNLASTID-NWKLHQIFSKFGDIQSSKVV-VSQD---G 91
+A + S S AT T T +D N Q+F FG + + V V +D
Sbjct: 15 TAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTR 74
Query: 92 KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDD 150
+S GYG+V ++ + A AI++L + G + S R ++ S + N+++KNLD+
Sbjct: 75 RSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGA-GNIFIKNLDE 133
Query: 151 DVTEEIL 157
+ + L
Sbjct: 134 SIDHKAL 140
Score = 63 (27.2 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 13/32 (40%), Positives = 26/32 (81%)
Query: 317 AAANNSMLAVASPDERKDILGQGLYPLVKKLK 348
A A+N L+ A+P++++ +LG+ LYPLV++++
Sbjct: 542 ALASN--LSNATPEQQRTMLGEVLYPLVEQVE 571
Score = 41 (19.5 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 21 SLYVGDLD 28
SLYVGDLD
Sbjct: 37 SLYVGDLD 44
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 349 (127.9 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 80/213 (37%), Positives = 120/213 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ KL +IF K+G S +V+ GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEM 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y RA + E + + + D NLYVKN++D +D+ L++ F
Sbjct: 257 NGKQVYVG--RAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTL--YQRA 270
R ++L Y ++ +AS +P L YQ A
Sbjct: 374 RQAHLTSQYMQR---MASVRAVPNPVLNPYQPA 403
Score = 288 (106.4 bits), Expect = 9.3e-30, Sum P(2) = 9.3e-30
Identities = 72/190 (37%), Positives = 107/190 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM-- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + N+Y+KN +D+D+ +L
Sbjct: 159 ---NGMLLNDRKVFVGRFKSR--------KEREAEMGARAKEFTNVYIKNFGEDMDDEKL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F + G S+++M + G SKGFGFV F ++A RA++ +NG + K +YV AQ
Sbjct: 208 KEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQ 267
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 268 KKGERQTELK 277
Score = 143 (55.4 bits), Expect = 7.7e-14, Sum P(3) = 7.7e-14
Identities = 33/101 (32%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + + AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEMGAR-AKEFTNVYIKNF 198
Score = 123 (48.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGLDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A + Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTSQYMQRM 386
Score = 108 (43.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + +P+ + +Q
Sbjct: 70 DTMNFDVIKGRPVRIMWSQ 88
Score = 77 (32.2 bits), Expect = 7.7e-14, Sum P(3) = 7.7e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 73 (30.8 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 547 SMLAAAPPQEQKQMLGERLFPLIQNM 572
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 348 (127.6 bits), Expect = 2.8e-36, Sum P(2) = 2.8e-36
Identities = 75/200 (37%), Positives = 118/200 (59%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L ++F K+G S KV+ GKS+G+GFV Y E A A+E++
Sbjct: 198 NFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEM----- 252
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIEL 175
G EL ++ GR Q+ +K + + +E + + NLY+KN++D +D+ +L
Sbjct: 253 NGTELNGKTVFVGRAQKKME-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 311
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 RKEFSPFGSITSAKVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 370
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K ER ++L Y ++ G+
Sbjct: 371 RKEERKAHLTNQYMQRIAGM 390
Score = 284 (105.0 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
Identities = 68/189 (35%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 103 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 161
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ + K +E N+Y+KN DD+D+ LK
Sbjct: 162 MLLNDRKVFVGRFKSRKEREA----EMGAK------AKEFT--NVYIKNFGDDMDDQRLK 209
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G S+GFGFV + ++AN+A+ +NG + K ++V AQ
Sbjct: 210 ELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQK 269
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 270 KMERQAELK 278
Score = 142 (55.0 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 33/101 (32%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F D A+RAI +
Sbjct: 101 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKM 159
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + + AK+ + NF
Sbjct: 160 NGMLLNDRKVFVGRFKSRKEREAEMGAK-AKEFTNVYIKNF 199
Score = 109 (43.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 70
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 71 DTMNFDVVKGKPIRIMWSQ 89
Score = 74 (31.1 bits), Expect = 2.6e-13, Sum P(3) = 2.6e-13
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L++ FS G + S +V +S GY +V + A A++ + V+G +
Sbjct: 28 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGKPIRIMW 87
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R +++S N+++KNLD + + L
Sbjct: 88 SQRDPSLRKSG-VGNVFIKNLDKSIDNKAL 116
Score = 72 (30.4 bits), Expect = 2.8e-36, Sum P(2) = 2.8e-36
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 547 SMLAAAPPQEQKQMLGERLFPLIQAM 572
Score = 40 (19.1 bits), Expect = 7.2e-10, Sum P(3) = 7.2e-10
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L D+TE +L
Sbjct: 13 SLYVGDLHPDITEAML 28
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 337 (123.7 bits), Expect = 2.9e-36, Sum P(3) = 2.9e-36
Identities = 73/195 (37%), Positives = 110/195 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G LYA + R++ + + + D NLYVKN++D +D+ +L+
Sbjct: 254 KEVSGRLLYAGRAQK-RVERQNELKRRF-EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQ 251
K ER + L Y ++
Sbjct: 371 KEERKAILTNQYMQR 385
Score = 260 (96.6 bits), Expect = 1.2e-27, Sum P(3) = 1.2e-27
Identities = 70/189 (37%), Positives = 103/189 (54%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ T N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALE--FT------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 159 (61.0 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 37/103 (35%), Positives = 58/103 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ D +D L FS G I S K+ G S+GFGFV F + A +AINT+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPV 262
NG+L + + ++V +++RER + L A + + N PV
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGAR-ALEFTNIYVKNLPV 200
Score = 108 (43.1 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + +P+ + +Q
Sbjct: 70 DTMNFEMLKGQPIRIMWSQ 88
Score = 74 (31.1 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 22/90 (24%), Positives = 44/90 (48%)
Query: 70 LHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L++ FS G I S +V +S GY ++ + A A++ + ++G +
Sbjct: 27 LYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMW 86
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R +++S N+++KNL+D + + L
Sbjct: 87 SQRDPGLRKSG-VGNIFIKNLEDSIDNKAL 115
Score = 61 (26.5 bits), Expect = 2.9e-36, Sum P(3) = 2.9e-36
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 322 SMLAVASPDERKDILGQGLYPLV 344
SMLA A E+K ++G+ LYPL+
Sbjct: 534 SMLAAAPLHEQKQMIGERLYPLI 556
Score = 41 (19.5 bits), Expect = 6.5e-11, Sum P(3) = 6.5e-11
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L DVTE +L
Sbjct: 12 SLYVGDLHPDVTEAML 27
Score = 38 (18.4 bits), Expect = 2.9e-36, Sum P(3) = 2.9e-36
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 17 GTPF-SLYVGDL--DSTDLL 33
G P SLYVGDL D T+ +
Sbjct: 7 GYPLASLYVGDLHPDVTEAM 26
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 358 (131.1 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 72/193 (37%), Positives = 115/193 (59%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIELKQY 178
G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L++
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDGIDDERLRKA 313
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K
Sbjct: 314 FSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Query: 239 ERTSYLRIMYAKQ 251
ER +YL Y ++
Sbjct: 373 ERQAYLTNEYMQR 385
Score = 274 (101.5 bits), Expect = 7.0e-27, Sum P(2) = 7.0e-27
Identities = 67/189 (35%), Positives = 105/189 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AI+K+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA----ELGAR------AKEF--PNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 135 (52.6 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 33/101 (32%), Positives = 56/101 (55%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN++ ++ L S G I S ++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ P + NF
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
Score = 130 (50.8 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAYLTNEYMQRM 386
Score = 75 (31.5 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVV--VSQDGKSKGYGFVQYSTQ 104
S + PT + +L + L++ FS G I S ++ + G S Y +V +
Sbjct: 4 STPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQHT 62
Query: 105 ESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
+ A +A++ + ++G + S R +++S N++VKNLD + + L
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFVKNLDKSINNKAL 115
Score = 60 (26.2 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
S LA A P ++K +LG+ L+PL++ +
Sbjct: 543 SRLASAPPQKQKQMLGERLFPLIQAM 568
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 347 (127.2 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 74/215 (34%), Positives = 120/215 (55%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N ID+ KL IF++FG S V+ + G+S+G+GFV + A A+ ++ +
Sbjct: 197 NFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G LY + R++ + + + + + NLYVKN++D +D+ +L++ F
Sbjct: 257 NGRVLYVGRAQK-RLERQGELKRKF-EQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
+ G I+S K+M T+ G S+GFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 APYGTITSAKVM-TDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVY 274
R + L Y ++ + + P PT YQ+ Y
Sbjct: 374 RKAILTNQYIQRLASIRAIPGPAIPTTYQQGSGYY 408
Score = 281 (104.0 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 72/190 (37%), Positives = 105/190 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIE
Sbjct: 102 FIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIE---- 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
T+ GM L + G + K + ++ + ++ N+Y+KN +D+D +L
Sbjct: 157 -TMNGMLLNDRKVFVGHFKSR--------KEREAEMGAKAVEFTNVYIKNFGEDIDSEKL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F++ G SV +M RG S+GFGFV F N +A RA+ +NG + + LYV AQ
Sbjct: 208 KNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER L+
Sbjct: 268 KRLERQGELK 277
Score = 156 (60.0 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+++ +D L FS G I S K++ G SKG+GFV F + ANRAI T+
Sbjct: 100 NIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETM 158
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L + + ++V ++++ER
Sbjct: 159 NGMLLNDRKVFVGHFKSRKER 179
Score = 126 (49.4 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +ID+ KL + F+ +G I S+KV+ + G S+G+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDSIDDEKLRKEFAPYGTITSAKVM-TDGGHSRGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ L
Sbjct: 356 RIVSTKPLYV-ALAQRKEERKAILTNQYIQRL 386
Score = 103 (41.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L Q FS G I S+++ R T R + G+ ++ F P +A A+
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSL--GYAYINFQQPADAECAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + +P+ + +Q
Sbjct: 70 DTMNYEVIKGRPIRIMWSQ 88
Score = 81 (33.6 bits), Expect = 4.1e-15, Sum P(3) = 4.1e-15
Identities = 26/112 (23%), Positives = 55/112 (49%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQES 106
A P + +L + + L+Q FS G I S +V V+++ +S GY ++ +
Sbjct: 7 AYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITR--RSLGYAYINFQQPAD 64
Query: 107 ALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KN+D+ + + L
Sbjct: 65 AECALDTMNYEVIKGRPIRIMWSQRDPGLRKSG-VGNIFIKNMDESIDNKAL 115
Score = 66 (28.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A E+K +LG+ LYPL++ L
Sbjct: 543 SMLAAAPLKEQKQLLGERLYPLIQIL 568
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 338 (124.0 bits), Expect = 3.5e-35, Sum P(2) = 3.5e-35
Identities = 71/209 (33%), Positives = 118/209 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +++ +L ++F K+G S KV+ +GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDM 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKSMFVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 LPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTLYQ 268
R ++L Y ++ + N ++P YQ
Sbjct: 374 RQAHLTNQYMQRMASVRVPNPVINP--YQ 400
Score = 286 (105.7 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
Identities = 69/189 (36%), Positives = 109/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AI+K+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN DD+++ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGDDMNDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M + G SKGFGFV F ++A +A++ +NG + K ++V AQ
Sbjct: 209 EMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 147 (56.8 bits), Expect = 2.6e-14, Sum P(3) = 2.6e-14
Identities = 34/101 (33%), Positives = 58/101 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI+ +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 124 (48.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + F FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFLPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 386
Score = 109 (43.4 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + +P+ + +Q
Sbjct: 70 DTMNFDVIKGRPVRIMWSQ 88
Score = 78 (32.5 bits), Expect = 2.6e-14, Sum P(3) = 2.6e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 72 (30.4 bits), Expect = 3.5e-35, Sum P(2) = 3.5e-35
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 546 SMLAAAPPQEQKQMLGERLFPLIQAM 571
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 332 (121.9 bits), Expect = 4.4e-35, Sum P(2) = 4.4e-35
Identities = 73/196 (37%), Positives = 115/196 (58%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F+KFG+I S +V+ + +GKSKG+GFV ++ E A A++ L+
Sbjct: 216 YVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 117 ATVEGMELYAPSLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+T+EG +L RA + E A + ++ + + ++ NLYVKN+++ VD+ L
Sbjct: 275 STIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM-QKYQGVNLYVKNLDETVDDDGL 333
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVAIAQ
Sbjct: 334 KKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQ 393
Query: 236 TKRERTSYLRIMYAKQ 251
K +R + L Y ++
Sbjct: 394 RKEDRRAQLASQYMQR 409
Score = 291 (107.5 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 75/191 (39%), Positives = 106/191 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + +DG SKGYGFV + T+E+A NAI+K
Sbjct: 123 FIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQK--- 179
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ Q A N + L + + N+YVKN D ++ L+
Sbjct: 180 --VNGMLLAGKKVFVGKFQPRAQRN----RELGETAKQFT---NVYVKNFGDHYNKETLE 230
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH--QKPLYVAIA 234
+ F++ G I+S ++M T G SKGFGFV F+NP+EA A+ L+ L+V A
Sbjct: 231 KLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRA 289
Query: 235 QTKRERTSYLR 245
Q K ER + L+
Sbjct: 290 QKKSERHAELK 300
Score = 137 (53.3 bits), Expect = 3.4e-12, Sum P(3) = 3.4e-12
Identities = 35/104 (33%), Positives = 52/104 (50%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ G SKG+GFV F + A AI +
Sbjct: 121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKV 180
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
NG+L K ++V Q + +R L AKQ + NF H
Sbjct: 181 NGMLLAGKKVFVGKFQPRAQRNRELGET-AKQFTNVYVKNFGDH 223
Score = 125 (49.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 27/77 (35%), Positives = 47/77 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDEANRAINT 218
+LYV +++ DV+E L + FS G + S+++ R N +S G+ +V F P +A RA++T
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 219 LNGILFHQKPLYVAIAQ 235
+N H KP+ + +Q
Sbjct: 93 MNFEALHGKPMRIMWSQ 109
Score = 78 (32.5 bits), Expect = 4.4e-35, Sum P(2) = 4.4e-35
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 301 RAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKL 347
+A Q + G Q + +MLA A+P E+K +LG+ +Y L++KL
Sbjct: 552 QAYQQRPQGIVIGGQEPLTS-AMLAAAAPQEQKQLLGERIYALIEKL 597
Score = 63 (27.2 bits), Expect = 3.4e-12, Sum P(3) = 3.4e-12
Identities = 24/96 (25%), Positives = 46/96 (47%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L + FS G + S +V + S GY +V + A A++ + + G +
Sbjct: 48 LFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMW 107
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLY 162
S R ++ S + N+++KNLD +++D K++Y
Sbjct: 108 SQRDPAMRRSGA-GNIFIKNLD-----KVIDNKSIY 137
Score = 49 (22.3 bits), Expect = 8.8e-11, Sum P(3) = 8.8e-11
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 116 AATVEGMELYAPSLRAGRIQESASFN--NLYVKNLDDDVTEEIL 157
AA V G AP + G+ Q +S+ +LYV +L DV E IL
Sbjct: 9 AAAVAGAA--AP--QPGQNQTGSSYTMASLYVGDLHPDVNESIL 48
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 315 (115.9 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 82/205 (40%), Positives = 110/205 (53%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++DN LH+ FS G I S KV G+S+GYGFVQ+ T++SA NAIEKL
Sbjct: 137 FVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNG 196
Query: 117 ATVEGMELYA-PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ +++ P LR +ESA+ +++ N+YVKN+++ + EL
Sbjct: 197 KVLNDKQIFVGPFLRKEE-RESAA--------------DKMKFTNVYVKNLSEATTDDEL 241
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F Q G ISS +MR G S+ FGFV F NP++A RA+ LNG F K YV AQ
Sbjct: 242 KTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQ 301
Query: 236 TKRERTSYLRIMYAKQGPGLASTNF 260
K ER L Y +QG F
Sbjct: 302 KKSERELELSRRY-EQGSSDGGNKF 325
Score = 304 (112.1 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
Identities = 68/197 (34%), Positives = 107/197 (54%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + +L F ++G I S+ V+ DGKS+ +GFV + E A A+E L
Sbjct: 228 YVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E Y + + + + Y + D + NLYVKN++D V + +L+
Sbjct: 288 KKFDDKEWYVGKAQK-KSERELELSRRYEQGSSDG-GNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G I+S K+MR G SKG GFV FS EA+R +N +NG + KPLYVA+AQ
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 237 KRERTSYLRIMYAKQGP 253
K ER + L+ +++ P
Sbjct: 406 KEERRAKLQAQFSQMRP 422
Score = 162 (62.1 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL+VKN++ VD L + FS CG I S K+ + G S+G+GFV F D A AI L
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 220 NGILFHQKPLYVAIAQTKRERTS 242
NG + + K ++V K ER S
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERES 217
Score = 102 (41.0 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 150 DDVTEEILDKNLYVKNINDDVDEIELKQYFSQ-CGIISSVKIMR-TNRGISKGFGFVCFS 207
D VT L +LYV +++ +V + +L YF++ C ++S V++ R S G+G+V +S
Sbjct: 38 DGVTHGALC-SLYVGDLDFNVTDSQLYDYFTEVCQVVS-VRVCRDAATNTSLGYGYVNYS 95
Query: 208 NPDEANRAINTLN 220
N D+A +A+ LN
Sbjct: 96 NTDDAEKAMQKLN 108
Score = 94 (38.1 bits), Expect = 1.3e-16, Sum P(3) = 1.3e-16
Identities = 31/91 (34%), Positives = 45/91 (49%)
Query: 72 QIFSKFGDI-QSSKVVVSQDGK---SKGYGFVQYSTQESALNAIEKLYAATVEG-MELYA 126
Q++ F ++ Q V V +D S GYG+V YS + A A++KL + + G M
Sbjct: 61 QLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRIT 120
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R + S NL+VKNLD V + L
Sbjct: 121 YSSRDSSARRSG-VGNLFVKNLDKSVDNKTL 150
Score = 62 (26.9 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 324 LAVASPDERKDILGQGLYPLVKKLK 348
LA A+P +++ +LG+ LYPLV +++
Sbjct: 566 LANATPAQQRTLLGESLYPLVDQIE 590
Score = 49 (22.3 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 24/70 (34%), Positives = 31/70 (44%)
Query: 12 DSAILGTPFSLYVGDLDS--TD------LLRLCSALIASIDVHSAMATPTFIPFT-VNLA 62
D G SLYVGDLD TD +C + S+ V AT T + + VN +
Sbjct: 38 DGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQ--VVSVRVCRDAATNTSLGYGYVNYS 95
Query: 63 STIDNWKLHQ 72
+T D K Q
Sbjct: 96 NTDDAEKAMQ 105
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 328 (120.5 bits), Expect = 4.6e-34, Sum P(2) = 4.6e-34
Identities = 70/209 (33%), Positives = 116/209 (55%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L + F ++G S KV+ GKS+G+GFV + E A A++ + +
Sbjct: 197 NFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKAIFVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
+ G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 315 TPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTLYQ 268
R ++L Y ++ + N ++P YQ
Sbjct: 374 RQAHLTNQYMQRMASVRVPNPVINP--YQ 400
Score = 293 (108.2 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 69/189 (36%), Positives = 110/189 (58%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AI+K+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
++F Q G SVK+M + G S+GFGFV F ++A +A++ +NG + K ++V AQ
Sbjct: 209 EWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 147 (56.8 bits), Expect = 3.2e-14, Sum P(3) = 3.2e-14
Identities = 34/101 (33%), Positives = 58/101 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI+ +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 128 (50.1 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + F+ FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKEFTPFGSITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 386
Score = 111 (44.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 77 (32.2 bits), Expect = 3.2e-14, Sum P(3) = 3.2e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 72 (30.4 bits), Expect = 4.6e-34, Sum P(2) = 4.6e-34
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 546 SMLAAAPPQEQKQMLGERLFPLIQAM 571
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 342 (125.4 bits), Expect = 6.7e-34, Sum P(2) = 6.7e-34
Identities = 74/214 (34%), Positives = 122/214 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +D+ +L +FS+FG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLY---------VKNLDDDVTEEILDKNLYVKNINDDV 170
G ++Y + +++ + + ++ + D + NLYVKN++D +
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGI 315
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D+ L++ FS G I+S K+ G SKGFGFVCFS+P+EA +A+ +NG + KPLY
Sbjct: 316 DDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 374
Query: 231 VAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHP 264
VA+AQ K ER ++L Y ++ +AST+ +P
Sbjct: 375 VALAQRKEERQAHLSNQYMQR---MASTSAVPNP 405
Score = 285 (105.4 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 70/189 (37%), Positives = 108/189 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ L+ FS FG+I S KVV ++G SKGYGFV + TQE A AIEK+
Sbjct: 102 FVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +++ L + +E N+Y+KN+ +D+D+ L+
Sbjct: 161 MFLNDRKVFVGRFKSRRDRQA----ELGAR------AKEFT--NVYIKNLGEDMDDERLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 146 (56.5 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN++ +D L FS G I S K++ G SKG+GFV F +EA RAI +
Sbjct: 100 NIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+ + + ++V +++R+R + L
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAEL 183
Score = 130 (50.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV + + G+SKG+GFV +S+ E A A+ ++
Sbjct: 307 YVKNLDDGIDDERLRKEFSPFGTITSAKVTM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 365
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A +N Y++ +
Sbjct: 366 RIVATKPLYV-ALAQRKEERQAHLSNQYMQRM 396
Score = 56 (24.8 bits), Expect = 6.7e-34, Sum P(2) = 6.7e-34
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P +K +LG+ L+ L++ +
Sbjct: 555 SMLASAPPQAQKQMLGEWLFSLIQAM 580
Score = 45 (20.9 bits), Expect = 3.3e-09, Sum P(3) = 3.3e-09
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 137 SASFNNLYVKNLDDDVTEEIL 157
S S +LYV +L DVTE +L
Sbjct: 7 SYSLASLYVGDLHPDVTEAML 27
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 348 (127.6 bits), Expect = 2.7e-33, Sum P(2) = 2.7e-33
Identities = 83/223 (37%), Positives = 122/223 (54%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL + + L + F++FG I S + ++ +GY FV + E A A E TV
Sbjct: 207 NLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE-----TV 261
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE-ILDK--NLYVKNINDDVDEIELK 176
G + + L GR Q+ A L + + E+ ++ K N+YVKN+N V E EL+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
++FSQCG I+S K+M +G SKGFGFVCFS P+EA A+ T +G +FH KPLYVAIAQ
Sbjct: 322 KHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQK 381
Query: 237 KRERTSYLRIMYAKQGPGL-ASTNFPVHPTLYQRALQVYQAPG 278
K +R L++ + + +S++ V+P Y PG
Sbjct: 382 KEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHPG 424
Score = 295 (108.9 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 73/195 (37%), Positives = 107/195 (54%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++ N L +F KFG+I S KV +DGKS+GYGFVQ+ +++A AI+ L +
Sbjct: 115 FVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNS 174
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V E+Y G+ ++K D EE NLY+KN++ DV E L+
Sbjct: 175 TIVADKEIYV-----GK----------FMKKTDRVKPEEKYT-NLYMKNLDADVSEDLLR 218
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G I S+ I + + +G+ FV F NP++A RA T+NG F K LYV AQ
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQK 278
Query: 237 KRERTSYLRIMYAKQ 251
K ER LR + ++
Sbjct: 279 KAEREQLLREQFKEK 293
Score = 135 (52.6 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN+ + V L+ F + G I S K+ G S+G+GFV F D A+ AI TL
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 220 NGILFHQKPLYVAIAQTKRER 240
N + K +YV K +R
Sbjct: 173 NSTIVADKEIYVGKFMKKTDR 193
Score = 128 (50.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
VN+A T + + H FS+ G I S+K++ + GKSKG+GFV +ST E A++A++ +
Sbjct: 311 VNVAVTEEELRKH--FSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQM 368
Query: 119 VEGMELY---APSLRAGRIQESASFNN 142
G LY A ++Q F N
Sbjct: 369 FHGKPLYVAIAQKKEDRKMQLQVQFGN 395
Score = 42 (19.8 bits), Expect = 2.7e-33, Sum P(2) = 2.7e-33
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 335 ILGQGLYPLVKKLK 348
+LG+ L+PLV+KL+
Sbjct: 528 LLGELLHPLVEKLE 541
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 319 (117.4 bits), Expect = 8.0e-33, Sum P(3) = 8.0e-33
Identities = 70/185 (37%), Positives = 105/185 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL + I + +F +FG+I S +V Q+ K +G+GFV Y+ E A A+++L
Sbjct: 267 NLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEY 326
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
+G +LY RA + E + + + + NL++KN+ D+VD+ LK F
Sbjct: 327 KGKKLYVG--RAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEF 384
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S KIM +G SKGFGFVC++ P+EAN+A+ +N + KPLYVA+AQ K
Sbjct: 385 SAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEV 444
Query: 240 RTSYL 244
R S L
Sbjct: 445 RRSQL 449
Score = 264 (98.0 bits), Expect = 9.4e-27, Sum P(3) = 9.4e-27
Identities = 69/192 (35%), Positives = 101/192 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV V + G +KGYGFV + + ESA AIE +
Sbjct: 171 FIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNG 230
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++Y + R ++S V+ L + T N+Y+KN++ ++ E E
Sbjct: 231 MLLNDKKVYVGHHVSRRERQSK------VEALKANFT------NVYIKNLDTEITEQEFS 278
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F Q G I+S+ +++ +GFGFV ++N + A +A++ LN + K LYV AQ
Sbjct: 279 DLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQK 338
Query: 237 KRERTSYLRIMY 248
K ER LR Y
Sbjct: 339 KHEREEELRKRY 350
Score = 150 (57.9 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
Identities = 33/90 (36%), Positives = 52/90 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K+ G +KG+GFV F + + AN AI +
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
NG+L + K +YV ++RER S + + A
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKA 258
Score = 140 (54.3 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ +L FS FG I S+K++ + GKSKG+GFV Y+T E A A+ ++
Sbjct: 367 FIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQ 426
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKN 147
+ G LY + ++ S + +N
Sbjct: 427 RMLAGKPLYVALAQRKEVRRSQLEAQIQARN 457
Score = 78 (32.5 bits), Expect = 2.8e-12, Sum P(3) = 2.8e-12
Identities = 25/119 (21%), Positives = 53/119 (44%)
Query: 41 ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFV 99
+S+ S A + + L ++ L ++F+ G + S +V +S GY +V
Sbjct: 67 SSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYV 126
Query: 100 QYSTQESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
+ E A+++L ++G S R +++ + N+++KNLD + + L
Sbjct: 127 NFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGT-GNVFIKNLDPAIDNKAL 184
Score = 49 (22.3 bits), Expect = 8.0e-33, Sum P(3) = 8.0e-33
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 324 LAVASPDERKDILGQGLYPLV 344
LA + RK +LG+ LYP V
Sbjct: 577 LAAVPEESRKQVLGELLYPKV 597
Score = 39 (18.8 bits), Expect = 8.0e-33, Sum P(3) = 8.0e-33
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 18 TPFSLYVGDLD 28
T SLYVG+LD
Sbjct: 78 TSASLYVGELD 88
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 77/212 (36%), Positives = 121/212 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 30 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 89
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 90 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 147
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 148 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 206
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 207 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 236
Score = 178 (67.7 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+Y+KN +D+D+ LK F + G SVK+M G SKGFGFV F ++A +A++ +
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG + K +YV AQ K ER + L+
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQTELK 110
Score = 130 (50.8 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 130 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 188
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 189 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 219
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 334 (122.6 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 77/191 (40%), Positives = 111/191 (58%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + + ++F+KFG I S+ + DGK KG+GFV Y E A+ A+E L
Sbjct: 222 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALND 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ + G +LY GR Q+ ++ K + E++ NL+VKN++D VD+
Sbjct: 282 SELNGEKLYV-----GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+MRT G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 397 AQRKDVRRSQL 407
Score = 268 (99.4 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 70/194 (36%), Positives = 99/194 (51%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FGDI SSK+ ++GKSKG+GFV + + +A AI+ L
Sbjct: 129 FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNG 188
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIE 174
+ G E+Y AP L K D + E NLYVKNIN + + +
Sbjct: 189 MLLNGQEIYVAPHLSR--------------KERDSQLEETKAHYTNLYVKNINSETTDEQ 234
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
++ F++ G I S + + G KGFGFV + ++A +A+ LN + + LYV A
Sbjct: 235 FQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 294
Query: 235 QTKRERTSYLRIMY 248
Q K ER L+ Y
Sbjct: 295 QKKNERMHVLKKQY 308
Score = 161 (61.7 bits), Expect = 6.2e-15, Sum P(3) = 6.2e-15
Identities = 36/85 (42%), Positives = 50/85 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ D+D L FS G I S KI G SKGFGFV F A AI+ L
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + +YVA +++ER S L
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQL 211
Score = 145 (56.1 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++D+ KL + F+ +G I S+KV+ +++GKSKG+GFV +ST E A AI +
Sbjct: 325 FVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQ 384
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKN 147
V G LY + ++ S + +N
Sbjct: 385 QIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 415
Score = 98 (39.6 bits), Expect = 6.2e-15, Sum P(3) = 6.2e-15
Identities = 28/100 (28%), Positives = 49/100 (49%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAAT 118
+L ++ L+ IFS G + S +V K S GY +V ++ E+ AIE+L
Sbjct: 44 DLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTP 103
Query: 119 VEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
++G S R +++ S N+++KNL D+ + L
Sbjct: 104 IKGRLCRIMWSQRDPSLRKKGS-GNIFIKNLHPDIDNKAL 142
Score = 40 (19.1 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 7 ALNNNDSAILGTPFSLYVGDLD 28
A + ++ + SLYVGDL+
Sbjct: 25 ATGSESQSVENSSASLYVGDLE 46
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 315 (115.9 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 75/192 (39%), Positives = 107/192 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ ++FS FG I S + QDGKSKG+GFV + ESA+ A+E+L
Sbjct: 236 YVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELND 295
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++Y GR Q+ +K + V E L K NL+VKN++D +D
Sbjct: 296 KEINGQKIYV-----GRAQKKRERLE-ELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDS 349
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G I+S K+M G SKGFGFVCF+ P+EA +AI +N + + KPLYVA
Sbjct: 350 EKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVA 409
Query: 233 IAQTKRERTSYL 244
+AQ K R S L
Sbjct: 410 LAQRKDVRRSQL 421
Score = 251 (93.4 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 69/192 (35%), Positives = 99/192 (51%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV + G+SK +GFV Y T E+A AIE +
Sbjct: 143 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNG 202
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E++ + + +ES F + + T N+YVKNI+ + E +
Sbjct: 203 MLLNDREVFVGKHISKKDRES-KFEEMKA-----NFT------NIYVKNIDLNYSEESFE 250
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S+ + + G SKGFGFV F + + A +A+ LN + + +YV AQ
Sbjct: 251 KLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQK 310
Query: 237 KRERTSYLRIMY 248
KRER L+ Y
Sbjct: 311 KRERLEELKKQY 322
Score = 156 (60.0 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID+ KL + F FG I S+KV+V + GKSKG+GFV ++T E A AI ++
Sbjct: 339 FVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNT 398
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKN 147
+ G LY + ++ S + +N
Sbjct: 399 RMINGKPLYVALAQRKDVRRSQLEQQIQARN 429
Score = 134 (52.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
D N+++KN++ +D L FS G I S K+ G SK FGFV + + A AI
Sbjct: 139 DGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIE 198
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
+NG+L + + ++V +K++R S M A
Sbjct: 199 NVNGMLLNDREVFVGKHISKKDRESKFEEMKA 230
Score = 52 (23.4 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 312 NGNQRAAANNSMLAVASP-DERKDILGQGLYPLV 344
N NQ + + + + + P D++K ILG+ LYP +
Sbjct: 532 NRNQTSKRDLAAIISSVPQDQQKRILGEELYPKI 565
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 75/212 (35%), Positives = 119/212 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F G S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 69 NFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 125
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 126 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 183
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K E
Sbjct: 184 SPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 242
Query: 240 RTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
R ++L Y ++ + + PV +P YQ A
Sbjct: 243 RQAHLTNQYMQRMASVRAVPNPVINP--YQPA 272
Score = 218 (81.8 bits), Expect = 8.9e-18, P = 8.9e-18
Identities = 56/160 (35%), Positives = 87/160 (54%)
Query: 86 VVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYV 145
VV + SKGYGFV + TQE+A AIEK+ + +++ ++ + +E+ L
Sbjct: 2 VVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA----ELGA 57
Query: 146 KNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVC 205
+ +E N+Y+KN +D+D+ LK F G SVK+M G SKGFGFV
Sbjct: 58 R------AKEFT--NVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVS 106
Query: 206 FSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
F ++A +A++ +NG + K +YV AQ K ER + L+
Sbjct: 107 FERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 146
Score = 130 (50.8 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 166 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 224
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 225 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 255
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 312 (114.9 bits), Expect = 4.1e-30, Sum P(2) = 4.1e-30
Identities = 70/205 (34%), Positives = 116/205 (56%)
Query: 52 PTFIPFT----VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESA 107
PT + FT NL+ + +L ++ ++G+I + ++ GKSKG+GF + + E+A
Sbjct: 182 PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAA 241
Query: 108 LNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
N +E G +YA GR Q+ +K+ + + + NLY+KNI+
Sbjct: 242 KNVVENENGKIFHGKPIYA-----GRAQKKIE-REAELKHTFETKYQGV---NLYIKNID 292
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGI-SKGFGFVCFSNPDEANRAINTLNGILFHQ 226
D +D +L++ FSQ G I+S +M+ ++ SKGFGFVC++ PDEA RA+ +NG +
Sbjct: 293 DSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGT 352
Query: 227 KPLYVAIAQTKRERTSYLRIMYAKQ 251
KPLYVA+AQ K R + L + + ++
Sbjct: 353 KPLYVALAQRKDIRRAQLEMQHQQK 377
Score = 282 (104.3 bits), Expect = 9.2e-27, Sum P(2) = 9.2e-27
Identities = 67/199 (33%), Positives = 104/199 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ L+ FS FG+I S KVV SKG+GFV Y TQESA AI K+
Sbjct: 101 FIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + + + E+ N++ KN+++DV +LK
Sbjct: 161 MMINGQKVFVGPFKSSKERGQPT---------------EVKFTNVFFKNLSEDVGPDQLK 205
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ Q G I+++ IM ++G SKGFGF F + + A + NG +FH KP+Y AQ
Sbjct: 206 ELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQK 265
Query: 237 KRERTSYLRIMYAKQGPGL 255
K ER + L+ + + G+
Sbjct: 266 KIEREAELKHTFETKYQGV 284
Score = 131 (51.2 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 26/81 (32%), Positives = 49/81 (60%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + SKGFGFV + + A++AI +
Sbjct: 99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKV 158
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG++ + + ++V ++ +ER
Sbjct: 159 NGMMINGQKVFVGPFKSSKER 179
Score = 70 (29.7 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 23/100 (23%), Positives = 45/100 (45%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L +IF++ G + + +V + + S Y +V Y A A++ L
Sbjct: 16 DLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTP 75
Query: 119 VEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
+ G S R +++S N+++KNLD + + L
Sbjct: 76 IRGKACRIMWSQRDPSLRKSG-VGNVFIKNLDKGIDHKAL 114
Score = 48 (22.0 bits), Expect = 4.1e-30, Sum P(2) = 4.1e-30
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 317 AAAN-NSMLAVASPDERKDILGQGLYPLV 344
+A N S++ + S D++ LG+ LYPL+
Sbjct: 489 SALNLQSIINLPSRDQQNVALGEHLYPLI 517
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 291 (107.5 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
Identities = 71/189 (37%), Positives = 107/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 251 (93.4 bits), Expect = 5.3e-24, Sum P(2) = 5.3e-24
Identities = 52/148 (35%), Positives = 82/148 (55%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++Y + +++ + + D +T NLYVKN++D +D+ L++ F
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEF 314
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFS 207
S G I+S K+M G SKGFGFVCFS
Sbjct: 315 SPFGTITSAKVMMEG-GRSKGFGFVCFS 341
Score = 146 (56.5 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
Identities = 34/101 (33%), Positives = 57/101 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ + NF
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYIKNF 198
Score = 111 (44.1 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 70 DTMNFDVIKGKPVRIMWSQ 88
Score = 96 (38.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYS 102
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFS 341
Score = 77 (32.2 bits), Expect = 5.3e-14, Sum P(3) = 5.3e-14
Identities = 27/113 (23%), Positives = 51/113 (45%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ + ++G + S R +++S N+++KNLD + + L
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFIKNLDKSIDNKAL 115
Score = 70 (29.7 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 508 SMLASAPPQEQKQMLGERLFPLIQAM 533
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 306 (112.8 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 60/176 (34%), Positives = 103/176 (58%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++ +
Sbjct: 254 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 313
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ A ++ + L + LY+KN++D +D+ +L+ F
Sbjct: 314 NGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEF 371
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
S G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 372 SSFGSISRVKVMQ-EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 272 (100.8 bits), Expect = 1.2e-25, Sum P(2) = 1.2e-25
Identities = 71/193 (36%), Positives = 109/193 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 159 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 217
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
++G +++ GR F N K+ + ++ + + N+Y+KN D+D+ L
Sbjct: 218 KLLKGCKVFV-----GR------FKNR--KDREAELRSKASEFTNVYIKNFGGDMDDERL 264
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 265 KDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ 324
Query: 236 TKRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 325 KKVERQAELKQMF 337
Score = 143 (55.4 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 31/86 (36%), Positives = 52/86 (60%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELR 241
Score = 44 (20.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L DVTE++L
Sbjct: 69 SLYVGDLHADVTEDLL 84
Score = 38 (18.4 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 21 SLYVGDL--DST-DLL 33
SLYVGDL D T DLL
Sbjct: 69 SLYVGDLHADVTEDLL 84
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 306 (112.8 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 60/176 (34%), Positives = 103/176 (58%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++ +
Sbjct: 196 NFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDI 255
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ A ++ + L + LY+KN++D +D+ +L+ F
Sbjct: 256 NGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEF 313
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
S G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 314 SSFGSISRVKVMQ-EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 272 (100.8 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 71/193 (36%), Positives = 109/193 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
++G +++ GR F N K+ + ++ + + N+Y+KN D+D+ L
Sbjct: 160 KLLKGCKVFV-----GR------FKNR--KDREAELRSKASEFTNVYIKNFGGDMDDERL 206
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 207 KDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ 266
Query: 236 TKRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 267 KKVERQAELKQMF 279
Score = 143 (55.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 31/86 (36%), Positives = 52/86 (60%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELR 183
Score = 44 (20.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L DVTE++L
Sbjct: 11 SLYVGDLHADVTEDLL 26
Score = 38 (18.4 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 21 SLYVGDL--DST-DLL 33
SLYVGDL D T DLL
Sbjct: 11 SLYVGDLHADVTEDLL 26
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 276 (102.2 bits), Expect = 3.3e-29, Sum P(3) = 3.3e-29
Identities = 72/192 (37%), Positives = 100/192 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 133 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKH--- 189
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G + + + + + T N+Y+KNI+ +V++ E +
Sbjct: 190 --VNGMLLNDKKVFVGHHISKKDRQSKF-EEMKANFT------NIYIKNIDPEVEDEEFR 240
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G I+S + R + G S+GFGFV FS + A A+ +N + LYV AQ
Sbjct: 241 KLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQK 300
Query: 237 KRERTSYLRIMY 248
K ER LR Y
Sbjct: 301 KHEREEELRKQY 312
Score = 201 (75.8 bits), Expect = 4.6e-25, Sum P(3) = 4.6e-25
Identities = 43/133 (32%), Positives = 73/133 (54%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N+ +++ + ++F KFG+I S+ + +GKS+G+GFV +ST ESA A+E++ V
Sbjct: 229 NIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEV 288
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
+LY + +E ++ + NLYVKN+ DDVD+ +L++ F
Sbjct: 289 RSQKLYVGRAQKKHEREEELRKQYEAARMEK--ASKYQGVNLYVKNLTDDVDDDKLRELF 346
Query: 180 SQCGIISSVKIMR 192
G I+S K+MR
Sbjct: 347 GPYGTITSAKVMR 359
Score = 153 (58.9 bits), Expect = 4.6e-25, Sum P(3) = 4.6e-25
Identities = 39/99 (39%), Positives = 53/99 (53%)
Query: 196 GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA-----K 250
G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S L +
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNNIR 473
Query: 251 QGPGLASTNFP---VHPTLYQRALQVYQAPGFRHGGMIP 286
Q A+ + P ++ Q PG + GGM P
Sbjct: 474 QQQAAAAAGMGQAYMAPAVFYGPGQQGFIPGAQRGGMFP 512
Score = 149 (57.5 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L F+ G I S K+ + G+SKG+GFV + + AN AI +
Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
NG+L + K ++V +K++R S M A
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKA 220
Score = 82 (33.9 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 25/121 (20%), Positives = 55/121 (45%)
Query: 40 IASIDVHSAMATPTFIPFTVN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYG 97
+ +++ + + P V L ++ L+++FS G + S +V +S GY
Sbjct: 27 VTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYA 86
Query: 98 FVQYSTQESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEI 156
+V Y+ A+++L ++G S R ++++ N+++KNLD + +
Sbjct: 87 YVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQ-GNVFIKNLDSAIDNKA 145
Query: 157 L 157
L
Sbjct: 146 L 146
Score = 62 (26.9 bits), Expect = 3.3e-29, Sum P(3) = 3.3e-29
Identities = 26/106 (24%), Positives = 41/106 (38%)
Query: 247 MYAKQGPGLAS-TNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFXXXXXXXLF--LTRAG 303
M A QGPG+ + +P+ + Q PG GG + G+ R G
Sbjct: 556 MGAMQGPGIPNGMGYPMVQGQFGGGRGRGQVPGM--GGPMRGGYGGGRGGVPLGGQMRPG 613
Query: 304 QAAANNLTN--GNQRAAA--NNSMLAVASPDERKDILGQGLYPLVK 345
Q G + L+ A P ++K +LG+ LYP ++
Sbjct: 614 QGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQ 659
Score = 40 (19.1 bits), Expect = 3.3e-29, Sum P(3) = 3.3e-29
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 21 SLYVGDLDSTDLLRLCSALIASI 43
SLYVG+LD + + L +SI
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSI 65
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 279 (103.3 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 73/193 (37%), Positives = 101/193 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+
Sbjct: 152 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKH--- 208
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G + + D++ N+YVKNIN +V + E +
Sbjct: 209 --VNGMLLNEKKVYVGHHIPKKDRQSKF-----DEMKANFT--NIYVKNINPEVTDDEFR 259
Query: 177 QYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F + G ++S + R G S+GFGFV F++ ++A++A+ LN FH + LYV AQ
Sbjct: 260 TLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQ 319
Query: 236 TKRERTSYLRIMY 248
K ER LR Y
Sbjct: 320 KKHEREEELRKSY 332
Score = 195 (73.7 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 43/137 (31%), Positives = 75/137 (54%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + + + +F K+GD+ SS + Q+ GKS+G+GFV +++ E A A+++L
Sbjct: 245 YVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
G LY RA + E + + + NLY+KN++D+VD+ +L
Sbjct: 305 EKEFHGQNLYVG--RAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKL 362
Query: 176 KQYFSQCGIISSVKIMR 192
+Q FS+ G I+S K+MR
Sbjct: 363 RQLFSEFGPITSAKVMR 379
Score = 155 (59.6 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 39/99 (39%), Positives = 54/99 (54%)
Query: 192 RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR--IMYA 249
++ G SKGFGFVCF+NPD+A +A+ +N + + KPLYVA+AQ K R + L I
Sbjct: 426 KSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQAR 485
Query: 250 KQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNG 288
Q + P Y +A V+ PG + G M P G
Sbjct: 486 NQLRMQQAAAAAGMPQQYMQA-PVFYGPGSQPGFMPPAG 523
Score = 141 (54.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L F+ G I S K+ + G SKG+GFV + + A++AI +
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 220 NGILFHQKPLYVAIAQTKRERTS 242
NG+L ++K +YV K++R S
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQS 232
Score = 86 (35.3 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L ++FS+ G + S +V +S GY +V Y+T A+E+L ++G
Sbjct: 77 LFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMW 136
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R ++++ N+++KNLD + + L
Sbjct: 137 SQRDPALRKTGQ-GNVFIKNLDVAIDNKAL 165
Score = 51 (23.0 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 302 AGQAAANNLTNGNQRAAA----NNSMLAVA-SPDERKDILGQGLYPLVKKL 347
AG+A A G + A A + AVA +P ++K ILG+ ++P ++ +
Sbjct: 646 AGRAPAG-APAGARGAGAPEGLQGQLAAVADNPGQQKQILGEAIFPKIQAI 695
Score = 50 (22.7 bits), Expect = 5.9e-10, Sum P(3) = 5.9e-10
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
PS A Q SAS LYV LD VTE +L
Sbjct: 50 PSSAAPHPQASAS---LYVGELDPSVTEAML 77
Score = 45 (20.9 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 21 SLYVGDLDS--TD--LLRLCSAL--IASIDVHSAMATPTFIPFT-VNLASTIDNWK 69
SLYVG+LD T+ L L S + +ASI V T + + VN +T D K
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEK 117
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 296 (109.3 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 66/190 (34%), Positives = 110/190 (57%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALN 109
AT T + F N +D+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A
Sbjct: 196 ATFTNV-FVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQK 254
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVK-NLDDDVTEEILDKNLYVKNIND 168
A+ L+ +++G LY + +I+ A + + L + + +Y+KN+++
Sbjct: 255 AVLDLHGKSIDGKVLYVGRAQK-KIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDE 311
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+D+ +LK+ FS G IS K+M G KGFG +CFS+ +EA +A++ +NG + KP
Sbjct: 312 TIDDEKLKEEFSSFGSISRAKVM-VEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKP 370
Query: 229 LYVAIAQTKR 238
L V + Q +R
Sbjct: 371 LQVTLGQARR 380
Score = 255 (94.8 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 69/189 (36%), Positives = 101/189 (53%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++Y + +E A+ V+ D + N++VKN DD+D+ +LK
Sbjct: 168 VRLNNRQVYVGRFKFP--EERAA----EVRTRD-----KATFTNVFVKNFGDDMDDDKLK 216
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK++R + G SKGFGFV + + A +A+ L+G K LYV AQ
Sbjct: 217 ELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276
Query: 237 KRERTSYLR 245
K ER + LR
Sbjct: 277 KIERLAELR 285
Score = 127 (49.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
Score = 52 (23.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 143 LYVKNLDDDVTEEILDK 159
LYV +LD DVTE++L K
Sbjct: 20 LYVGDLDPDVTEDMLYK 36
Score = 38 (18.4 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 21 SLYVGDLD 28
+LYVGDLD
Sbjct: 19 ALYVGDLD 26
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 294 (108.6 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 66/190 (34%), Positives = 111/190 (58%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALN 109
AT T + F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A
Sbjct: 196 ATFTNV-FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVK-NLDDDVTEEILDKNLYVKNIND 168
A+ L+ +++G LY + +I+ A + + L + + +Y+KN+++
Sbjct: 255 AVLDLHGKSIDGKVLYVGRAQK-KIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDE 311
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+++ +LK+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KP
Sbjct: 312 TINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 370
Query: 229 LYVAIAQTKR 238
L+V + Q +R
Sbjct: 371 LHVTLGQARR 380
Score = 253 (94.1 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 69/189 (36%), Positives = 100/189 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++Y + +E A+ V+ D N++VKNI DD+D+ +LK
Sbjct: 168 VRLNNRQVYVGRFKFP--EERAA----EVRTRD-----RATFTNVFVKNIGDDIDDEKLK 216
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK++R G SKGFGFV + + A +A+ L+G K LYV AQ
Sbjct: 217 ELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276
Query: 237 KRERTSYLR 245
K ER + LR
Sbjct: 277 KIERLAELR 285
Score = 126 (49.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
Score = 52 (23.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 143 LYVKNLDDDVTEEILDK 159
LYV +LD DVTE++L K
Sbjct: 20 LYVGDLDPDVTEDMLYK 36
Score = 38 (18.4 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 21 SLYVGDLD 28
+LYVGDLD
Sbjct: 19 ALYVGDLD 26
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 73/201 (36%), Positives = 117/201 (58%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL T + L ++F +FG+I S+ V+ +GKS+ +GFV + E+A+ AIEK+
Sbjct: 122 YVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNG 181
Query: 117 ATVEGMELYAPSLRAGRIQESAS-FNNLYVK-NLDDDVTEEILDK--NLYVKNINDDVDE 172
V+ EL+ GR Q + +L K L+ + + K NLYVKN++D VD
Sbjct: 182 VVVDEKELHV-----GRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS+ G I+S K+M + GISKG GFV FS +EA++A+ +NG + KP+YV+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K + +L+ + P
Sbjct: 297 LAQCKEQHKLHLQTQFNNPPP 317
Score = 159 (61.0 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 33/89 (37%), Positives = 52/89 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+YVKN+ + + +LK+ F + G I+S +M+ G S+ FGFV F + A AI +
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMY 248
NG++ +K L+V AQ K RT L+ +
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKF 208
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 39/107 (36%), Positives = 55/107 (51%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN +L +FS FG + S KV G SKGYGFVQ+ + S A
Sbjct: 34 FVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNG 93
Query: 117 ATVEGMELYA-PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
+ ++ P + G+ +S F N+YVKNL + T+ L K L+
Sbjct: 94 TLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADL-KRLF 139
Score = 125 (49.1 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN+++ +D +L FS G + S K+ R G+SKG+GFV F + A N
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 220 NGILFHQKPLYVA--IAQTKRERTSYLRIMYAK 250
NG L + ++V +++ + +++ +Y K
Sbjct: 92 NGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVK 124
Score = 41 (19.5 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
N++VKNLD+ + + L
Sbjct: 32 NVFVKNLDESIDNKQL 47
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 257 (95.5 bits), Expect = 7.6e-28, Sum P(2) = 7.6e-28
Identities = 60/165 (36%), Positives = 96/165 (58%)
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIE 174
+ G E+ S+ GR Q+ +K + + +E + + NLY+KN++D +D+ +
Sbjct: 6 MNGKEMSGKSIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 64
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+A
Sbjct: 65 LRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 123
Query: 235 QTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
Q K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 124 QRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 166
Score = 147 (56.8 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL TID+ KL + FS FG I S+KV++ +DG+SKG+GFV +S+ E A A+ ++ V
Sbjct: 55 NLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 113
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNL 148
LY +L + + A N Y++ +
Sbjct: 114 GSKPLYV-ALAQRKEERKAHLTNQYMQRV 141
Score = 75 (31.5 bits), Expect = 7.6e-28, Sum P(2) = 7.6e-28
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVN 350
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 328 SMLAAAPPQEQKQMLGERLFPLIQTMHSN 356
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 287 (106.1 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 66/189 (34%), Positives = 108/189 (57%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALN 109
AT T + F N + +D+ KL +IFS +G +S KV+ GKSKG+GFV+Y T E+A
Sbjct: 196 ATFTNV-FVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 254
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVK-NLDDDVTEEILDKNLYVKNIND 168
A+ L+ ++ G LY + +I+ A + + L + + +Y+KN+++
Sbjct: 255 AVLDLHGKSINGKVLYVGRAQK-KIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDE 311
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+D+ +LK+ FS G IS K+M G KGFG VCFS+ ++A +A++ +NG KP
Sbjct: 312 TIDDEKLKEEFSSFGSISRAKVM-VEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKP 370
Query: 229 LYVAIAQTK 237
L+V + Q +
Sbjct: 371 LHVTLGQAR 379
Score = 245 (91.3 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 68/189 (35%), Positives = 100/189 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++Y + +E A+ V+ D N++VKN +D+D+ +LK
Sbjct: 168 VRLNNRQVYVGRFKFP--EERAA----EVRTRD-----RATFTNVFVKNFGNDMDDEKLK 216
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G SVK++R G SKGFGFV + + A +A+ L+G + K LYV AQ
Sbjct: 217 EIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQK 276
Query: 237 KRERTSYLR 245
K ER + LR
Sbjct: 277 KIERLAELR 285
Score = 126 (49.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
Score = 52 (23.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 143 LYVKNLDDDVTEEILDK 159
LYV +LD DVTE++L K
Sbjct: 20 LYVGDLDPDVTEDMLYK 36
Score = 38 (18.4 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 21 SLYVGDLD 28
+LYVGDLD
Sbjct: 19 ALYVGDLD 26
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 284 (105.0 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 66/188 (35%), Positives = 109/188 (57%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALN 109
AT T + F N ID+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A
Sbjct: 196 ATFTNV-FVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQK 254
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
A+ +L+ +++G L + +I+ A + + D T +Y+KN+++
Sbjct: 255 AVLELHGKSIDGKVLCVGRAQK-KIERLAELRRRFERLKLKDKTRPP-GVPIYIKNLDET 312
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+++ +LK+ FS G IS K+M G KGFG VCFS+ +EA++A+N +NG + K L
Sbjct: 313 INDEKLKEEFSLFGSISRAKVMM-EVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTL 371
Query: 230 YVAIAQTK 237
+V + Q +
Sbjct: 372 HVTLGQAR 379
Score = 244 (91.0 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 68/189 (35%), Positives = 99/189 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++Y + +E A+ V+ D N++VKN DD+D+ +LK
Sbjct: 168 VRLNNRQVYVGRFKFP--EERAA----EVRTRD-----RATFTNVFVKNFGDDIDDEKLK 216
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK++R G SKGFGFV + + A +A+ L+G K L V AQ
Sbjct: 217 KLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQK 276
Query: 237 KRERTSYLR 245
K ER + LR
Sbjct: 277 KIERLAELR 285
Score = 126 (49.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 29/86 (33%), Positives = 49/86 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
Score = 52 (23.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 143 LYVKNLDDDVTEEILDK 159
LYV +LD DVTE++L K
Sbjct: 20 LYVGDLDPDVTEDMLYK 36
Score = 38 (18.4 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 21 SLYVGDLD 28
+LYVGDLD
Sbjct: 19 ALYVGDLD 26
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 287 (106.1 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 77/219 (35%), Positives = 120/219 (54%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG--KSKGYGFVQYSTQESALNAIEKL 114
+ NL T+ + LH +FS++G + S VVV +DG +S+G+GFV + E+A A+E L
Sbjct: 205 YVKNLIETVTDDCLHTLFSQYGTVSS--VVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 115 YAATVEGMELYAPSLRAGR-IQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDE 172
G++L + L G+ +++ L K D+ + + + NLYVKN+++ ++E
Sbjct: 263 C-----GLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNE 317
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F G I S K+M G SKGFGFVCFSN +E+ +A LNG L KP+ V
Sbjct: 318 TRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVR 377
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRAL 271
+A+ K +R L+ Y + P T P P+ Q L
Sbjct: 378 VAERKEDRIKRLQ-QYFQAQPR-QYTQAPSAPSPAQPVL 414
Score = 273 (101.2 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 71/189 (37%), Positives = 106/189 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL S+I + L ++F FG I S KVV ++G+SKG+GFVQ+ T++SA++A L+
Sbjct: 115 YVKNLDSSITSSCLERMFCPFGSILSCKVV-EENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ V G +L+ + + +A N D T N+YVKN+ + V + L
Sbjct: 174 SMVYGKKLFVAKF-INKDERAAMAGN-------QDST------NVYVKNLIETVTDDCLH 219
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G +SSV +MR G S+GFGFV F NP+ A +A+ +L G+ K L+V A
Sbjct: 220 TLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK 279
Query: 237 KRERTSYLR 245
K ER L+
Sbjct: 280 KDERREMLK 288
Score = 139 (54.0 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 49/155 (31%), Positives = 74/155 (47%)
Query: 88 SQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKN 147
S GKS Y ++ + + SA NA+ +L + ++G +A RI S + Y +
Sbjct: 56 SVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKG--------KAMRIMWSQR-DLAYRRR 106
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
NLYVKN++ + L++ F G I S K++ N G SKGFGFV F
Sbjct: 107 TRTGFA------NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN-GQSKGFGFVQFD 159
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
A A + L+G + + K L+VA K ER +
Sbjct: 160 TEQSAVSARSALHGSMVYGKKLFVAKFINKDERAA 194
Score = 46 (21.3 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 1 MEVSLRALNNND-SAILGTPFSLYVGDL--DST--DLLRLCSALIASIDVH 46
++ +AL N+ S+ G SLYVGDL D T DL+ S + + VH
Sbjct: 4 VKTETQALGNHQHSSRFG---SLYVGDLSPDVTEKDLIDKFSLNVPVVSVH 51
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 273 (101.2 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 56/176 (31%), Positives = 98/176 (55%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L +FSK+G S KV+ GKSK +GFV + + ++A NA+E + +
Sbjct: 196 NFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDI 255
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G ++ + +++ A ++ + + + K LY+KN++D +D+ L++ F
Sbjct: 256 NGQTIFVGRAQK-KVERQAELKEMFEQMKKERIRARQAAK-LYIKNLDDTIDDETLRKEF 313
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
S G I VK+M+ G SKGFG +CF +P+ A +A+ +NG + KPL +A+ Q
Sbjct: 314 SVFGSICRVKVMQ-EAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQ 368
Score = 273 (101.2 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 68/192 (35%), Positives = 105/192 (54%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ ++G SKGYGFV Y Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ L+ ++ + +E+ ++ + T N+Y+KN DD+D+ L+
Sbjct: 160 KLLRDSTLFVARFKSRKDREAE------LREKPAEFT------NVYIKNFGDDMDDESLR 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M+ G SK FGFV F + A A+ +NG + + ++V AQ
Sbjct: 208 SVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQK 267
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 268 KVERQAELKEMF 279
Score = 152 (58.6 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 32/86 (37%), Positives = 53/86 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M G SKG+GFV + + A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L L+VA +++++R + LR
Sbjct: 158 NGKLLRDSTLFVARFKSRKDREAELR 183
Score = 48 (22.0 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L +DVTE++L
Sbjct: 11 SLYVGDLHEDVTEDLL 26
Score = 38 (18.4 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 21 SLYVGDL--DST-DLL 33
SLYVGDL D T DLL
Sbjct: 11 SLYVGDLHEDVTEDLL 26
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 66/190 (34%), Positives = 111/190 (58%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALN 109
AT T + F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A
Sbjct: 32 ATFTNV-FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQK 90
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVK-NLDDDVTEEILDKNLYVKNIND 168
A+ L+ +++G LY + +I+ A + + L + + +Y+KN+++
Sbjct: 91 AVLDLHGKSIDGKVLYVGRAQK-KIERLAELRRRFERLRLKEKSRPPGVP--IYIKNLDE 147
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+++ +LK+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KP
Sbjct: 148 TINDEKLKEEFSSFGSISRAKVMM-EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKP 206
Query: 229 LYVAIAQTKR 238
L+V + Q +R
Sbjct: 207 LHVTLGQARR 216
Score = 178 (67.7 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 39/86 (45%), Positives = 54/86 (62%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKNI DD+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L
Sbjct: 36 NVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
+G K LYV AQ K ER + LR
Sbjct: 96 HGKSIDGKVLYVGRAQKKIERLAELR 121
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 260 (96.6 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 70/189 (37%), Positives = 103/189 (54%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ T N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALE--FT------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 178 (67.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 42/136 (30%), Positives = 68/136 (50%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G LYA + R++ + + + D NLYVKN++D +D+ +L+
Sbjct: 254 KEVSGRLLYAGRAQK-RVERQNELKRRF-EQMKQDRLRRYQGVNLYVKNLDDSIDDDKLR 311
Query: 177 QYFSQCGIISSVKIMR 192
+ FS G+I+S K R
Sbjct: 312 KEFSPYGVITSAKKRR 327
Score = 159 (61.0 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 37/103 (35%), Positives = 58/103 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ D +D L FS G I S K+ G S+GFGFV F + A +AINT+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPV 262
NG+L + + ++V +++RER + L A + + N PV
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGAR-ALEFTNIYVKNLPV 200
Score = 74 (31.1 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 22/90 (24%), Positives = 44/90 (48%)
Query: 70 LHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L++ FS G I S +V +S GY ++ + A A++ + ++G +
Sbjct: 27 LYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMW 86
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R +++S N+++KNL+D + + L
Sbjct: 87 SQRDPGLRKSG-VGNIFIKNLEDSIDNKAL 115
Score = 41 (19.5 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L DVTE +L
Sbjct: 12 SLYVGDLHPDVTEAML 27
Score = 38 (18.4 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 17 GTPF-SLYVGDL--DSTDLL 33
G P SLYVGDL D T+ +
Sbjct: 7 GYPLASLYVGDLHPDVTEAM 26
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 224 (83.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 60/165 (36%), Positives = 88/165 (53%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S KV + GKSK YGFV Y +ESA AIEK
Sbjct: 107 FVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEK--- 163
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G++L + ++ G ++K + T + NLYVKN D V E L+
Sbjct: 164 --VNGVQLGSKNVYVGP----------FIKK-SERATNDTKFTNLYVKNFPDSVTETHLR 210
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
Q F+ G I+S+ + N+ ++ F F+ +++ + A A++ LNG
Sbjct: 211 QLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNG 253
Score = 221 (82.9 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 49/131 (37%), Positives = 82/131 (62%)
Query: 138 ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI 197
A F+NL V+N + + + NLY+KN++D +D+I L++ F G I+S K+MR +
Sbjct: 434 AKFDNLNVENKNKH--QGV---NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQ 488
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAS 257
SKGFGFVCF++ +EAN+A+ ++ + + KPLYV +A+ + +R S L+ + + P
Sbjct: 489 SKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF-RMHPIRHH 547
Query: 258 TNFPVH-PTLY 267
N P++ P Y
Sbjct: 548 MNNPLNTPMQY 558
Score = 131 (51.2 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 34/109 (31%), Positives = 56/109 (51%)
Query: 18 TPFSLYVGDLDSTDLLR-LCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSK 76
TP LYVG S + A +++V + + NL ID+ L ++F
Sbjct: 413 TPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEP 472
Query: 77 FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
FG I S+KV+ + +SKG+GFV +++QE A A+ +++ + G LY
Sbjct: 473 FGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLY 521
Score = 128 (50.1 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN++ +D L FS G I S K+ G SK +GFV + + + A AI +
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 220 NGILFHQKPLYVAIAQTKRER-TSYLRI--MYAKQGP 253
NG+ K +YV K ER T+ + +Y K P
Sbjct: 165 NGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFP 201
Score = 106 (42.4 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
+LYV ++N+DV E L + F+ G +SS+++ R + S G+ +V + N +A RA++T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 219 LN 220
LN
Sbjct: 77 LN 78
Score = 96 (38.9 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 30/115 (26%), Positives = 55/115 (47%)
Query: 45 VHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYST 103
+H + +T + + +L + L++IF+ G + S +V S KS GY +V Y
Sbjct: 9 MHPSFSTASL--YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 104 QESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ L ++G S R +++S + N++VKNLD + + L
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGT-GNIFVKNLDKSIDNKAL 120
Score = 69 (29.3 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 308 NNLT-NGNQRAAANNSMLAVASPDERKDILGQGLYPLV 344
NN+ N N + + LA A P +K +LG+ L+PLV
Sbjct: 790 NNMNVNFNNNSTLTAAALASAPPSMQKQVLGENLFPLV 827
Score = 40 (19.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 305 AAANNLTNGNQRAAANNSMLAVASPDE 331
A NN TN N + ++ + A DE
Sbjct: 378 AGNNNSTNNNNNSGSSMNNAGSAKKDE 404
Score = 38 (18.4 bits), Expect = 2.5e-21, Sum P(3) = 2.5e-21
Identities = 11/39 (28%), Positives = 13/39 (33%)
Query: 285 IPNGFXXXXXXXLFLTRAGQAAANNLTNGNQRAAANNSM 323
+PN L AGQ A L NN+M
Sbjct: 658 VPNALAQNGQQQPNLNAAGQHNAQQLQQQGNNQLLNNNM 696
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 224 (83.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 60/165 (36%), Positives = 88/165 (53%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S KV + GKSK YGFV Y +ESA AIEK
Sbjct: 107 FVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEK--- 163
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G++L + ++ G ++K + T + NLYVKN D V E L+
Sbjct: 164 --VNGVQLGSKNVYVGP----------FIKK-SERATNDTKFTNLYVKNFPDSVTETHLR 210
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
Q F+ G I+S+ + N+ ++ F F+ +++ + A A++ LNG
Sbjct: 211 QLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNG 253
Score = 221 (82.9 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 49/131 (37%), Positives = 82/131 (62%)
Query: 138 ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI 197
A F+NL V+N + + + NLY+KN++D +D+I L++ F G I+S K+MR +
Sbjct: 434 AKFDNLNVENKNKH--QGV---NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQ 488
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAS 257
SKGFGFVCF++ +EAN+A+ ++ + + KPLYV +A+ + +R S L+ + + P
Sbjct: 489 SKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF-RMHPIRHH 547
Query: 258 TNFPVH-PTLY 267
N P++ P Y
Sbjct: 548 MNNPLNTPMQY 558
Score = 131 (51.2 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 34/109 (31%), Positives = 56/109 (51%)
Query: 18 TPFSLYVGDLDSTDLLR-LCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSK 76
TP LYVG S + A +++V + + NL ID+ L ++F
Sbjct: 413 TPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEP 472
Query: 77 FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
FG I S+KV+ + +SKG+GFV +++QE A A+ +++ + G LY
Sbjct: 473 FGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLY 521
Score = 128 (50.1 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 33/97 (34%), Positives = 49/97 (50%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN++ +D L FS G I S K+ G SK +GFV + + + A AI +
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKV 164
Query: 220 NGILFHQKPLYVAIAQTKRER-TSYLRI--MYAKQGP 253
NG+ K +YV K ER T+ + +Y K P
Sbjct: 165 NGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFP 201
Score = 106 (42.4 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
+LYV ++N+DV E L + F+ G +SS+++ R + S G+ +V + N +A RA++T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 219 LN 220
LN
Sbjct: 77 LN 78
Score = 96 (38.9 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 30/115 (26%), Positives = 55/115 (47%)
Query: 45 VHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYST 103
+H + +T + + +L + L++IF+ G + S +V S KS GY +V Y
Sbjct: 9 MHPSFSTASL--YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 104 QESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ L ++G S R +++S + N++VKNLD + + L
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGT-GNIFVKNLDKSIDNKAL 120
Score = 69 (29.3 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 308 NNLT-NGNQRAAANNSMLAVASPDERKDILGQGLYPLV 344
NN+ N N + + LA A P +K +LG+ L+PLV
Sbjct: 790 NNMNVNFNNNSTLTAAALASAPPSMQKQVLGENLFPLV 827
Score = 40 (19.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 305 AAANNLTNGNQRAAANNSMLAVASPDE 331
A NN TN N + ++ + A DE
Sbjct: 378 AGNNNSTNNNNNSGSSMNNAGSAKKDE 404
Score = 38 (18.4 bits), Expect = 2.5e-21, Sum P(3) = 2.5e-21
Identities = 11/39 (28%), Positives = 13/39 (33%)
Query: 285 IPNGFXXXXXXXLFLTRAGQAAANNLTNGNQRAAANNSM 323
+PN L AGQ A L NN+M
Sbjct: 658 VPNALAQNGQQQPNLNAAGQHNAQQLQQQGNNQLLNNNM 696
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 67/189 (35%), Positives = 105/189 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AI+K+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA----ELGAR------AKEF--PNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 55/154 (35%), Positives = 90/154 (58%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++ +
Sbjct: 197 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 256
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIELKQY 178
G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L++
Sbjct: 257 NGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDGIDDERLRKA 313
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEA 212
FS G I+S K+M G SKGFGFVCFS+P+EA
Sbjct: 314 FSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEA 346
Score = 135 (52.6 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 33/101 (32%), Positives = 56/101 (55%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN++ ++ L S G I S ++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ P + NF
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
Score = 75 (31.5 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVV--VSQDGKSKGYGFVQYSTQ 104
S + PT + +L + L++ FS G I S ++ + G S Y +V +
Sbjct: 4 STPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQHT 62
Query: 105 ESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
+ A +A++ + ++G + S R +++S N++VKNLD + + L
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFVKNLDKSINNKAL 115
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 52/120 (43%), Positives = 78/120 (65%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLY+KN++D +D+ +L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 80
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP 277
NG + KPLYVA+AQ K ER ++L Y ++ G+ + P + L +Q A Y P
Sbjct: 81 NGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVP 138
Score = 147 (56.8 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL TID+ KL + FS FG I S+KV++ +DG+SKG+GFV +S+ E A A+ ++ V
Sbjct: 27 NLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 85
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNL 148
LY +L + + A N Y++ +
Sbjct: 86 GSKPLYV-ALAQRKEERKAHLTNQYMQRV 113
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 58/165 (35%), Positives = 92/165 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AI+K+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L + +E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA----ELGAR------AKEF--PNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
F + G SVK+M G SKGFGFV F ++A +A++ +NG
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 135 (52.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 33/101 (32%), Positives = 56/101 (55%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN++ ++ L S G I S ++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ P + NF
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
Score = 75 (31.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVV--VSQDGKSKGYGFVQYSTQ 104
S + PT + +L + L++ FS G I S ++ + G S Y +V +
Sbjct: 4 STPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQHT 62
Query: 105 ESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
+ A +A++ + ++G + S R +++S N++VKNLD + + L
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSG-VGNIFVKNLDKSINNKAL 115
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 64/182 (35%), Positives = 94/182 (51%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +IDN ++ FS FG+I + V +DG S+GYGFV + ++E+A AIEK+
Sbjct: 119 NLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNGMLC 178
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
+++ R +E + KNLYVKN++++ E L++ F
Sbjct: 179 NNQKVHVVKFIPRRDREQEKATHF---------------KNLYVKNLSEEFTEQHLREMF 223
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIAQTKR 238
G I+S K+M G S+ FGFV + NP A A+ L+G L K LYVA A +K
Sbjct: 224 EPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKA 283
Query: 239 ER 240
ER
Sbjct: 284 ER 285
Score = 117 (46.2 bits), Expect = 0.00025, P = 0.00025
Identities = 27/94 (28%), Positives = 51/94 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+Y+KN+ +D + FS G I + + + G S+G+GFV F + + A AI +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 221 GILFHQKPLYVA--IAQTKRE--RTSYLRIMYAK 250
G+L + + ++V I + RE + ++ + +Y K
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVK 208
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 58/161 (36%), Positives = 90/161 (55%)
Query: 85 VVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLY 144
+VV + SKGY FV + TQE+A AIEK+ + +++ ++ + +E+ L
Sbjct: 42 IVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA----ELG 97
Query: 145 VKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFV 204
K +E N+Y+KN ++VD+ LK+ FSQ G SVK+MR G SKGFGFV
Sbjct: 98 AK------AKEFT--NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 149
Query: 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
+ ++AN+A+ +NG K ++V AQ K ER + L+
Sbjct: 150 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELK 190
Score = 125 (49.1 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++ +
Sbjct: 110 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 169
Query: 120 EGMELY 125
G ++
Sbjct: 170 SGKIIF 175
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 207 (77.9 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN++D +DE L++ FS G I+S K+M G SK FGF+CFS+ +EA +A+ +
Sbjct: 29 NLYVKNLDDSIDE-RLRKQFSPFGTITSAKVMMEG-GHSKRFGFICFSSHEEAFKAVMEM 86
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
NG + KPLYVA+AQ K E ++L Y + + + PV +P YQ A
Sbjct: 87 NGKIVATKPLYVALAQHKEECQTHLTNQYMHRMASVRTVPNPVINP--YQPA 136
Score = 105 (42.0 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +ID +L + FS FG I S+KV++ + G SK +GF+ +S+ E A A+ ++
Sbjct: 31 YVKNLDDSIDE-RLRKQFSPFGTITSAKVMM-EGGHSKRFGFICFSSHEEAFKAVMEMNG 88
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + N Y+ +
Sbjct: 89 KIVATKPLYV-ALAQHKEECQTHLTNQYMHRM 119
Score = 71 (30.1 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ L
Sbjct: 250 SMLASAPPQEQKQMLGEWLFPLIQVL 275
>POMBASE|SPAC343.07 [details] [associations]
symbol:mug28 "RNA-binding protein Mug28" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005619 "ascospore wall" evidence=IDA] [GO:0005628 "prospore
membrane" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0030437 "ascospore formation" evidence=IMP] [GO:0031321
"ascospore-type prospore assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC343.07 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005628 GO:GO:0005619 eggNOG:COG0724
GO:GO:0031321 PIR:T38656 RefSeq:NP_593427.1 HSSP:Q60900
ProteinModelPortal:Q9UT83 STRING:Q9UT83 EnsemblFungi:SPAC343.07.1
GeneID:2543165 KEGG:spo:SPAC343.07 OMA:YTHIVER OrthoDB:EOG447K4G
NextBio:20804191 Uniprot:Q9UT83
Length = 609
Score = 181 (68.8 bits), Expect = 6.6e-15, Sum P(3) = 6.6e-15
Identities = 40/97 (41%), Positives = 65/97 (67%)
Query: 160 NLYVKNINDDV--DEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAI 216
NL+VKN++D++ + +L++ FS+ G I S + + ISKG+GFV FS+P EA +AI
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
NTLNG+LF +K L+V A+ + +R L ++++ P
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYP 516
Score = 78 (32.5 bits), Expect = 6.6e-15, Sum P(3) = 6.6e-15
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQ-----SSKVVVSQDGKSKG-YGFVQYSTQESALNAIEK 113
NL ST + LH++F FG+ S K S D KS + F+ + + SA NAI
Sbjct: 26 NLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADNAIAS 85
Query: 114 LYAATVEGMEL 124
L ++ +G L
Sbjct: 86 LNGSSFQGNTL 96
Score = 70 (29.7 bits), Expect = 4.3e-14, Sum P(3) = 4.3e-14
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEK 113
F+ +NL + +L+ FS G I + S + Y V ST ES + IEK
Sbjct: 270 FVIGILNLPLKVSPVELYNEFSNHGHILGVAINQSINEDMTHYAEVAVSTYESCIEIIEK 329
Query: 114 LYAATVEG 121
+A EG
Sbjct: 330 FHAIAYEG 337
Score = 37 (18.1 bits), Expect = 6.6e-15, Sum P(3) = 6.6e-15
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 3 VSLRALNN-NDSAILGTPFSLYVGDLDST 30
++L L+ N + S+YVG+L ST
Sbjct: 2 IALEKLSEKNKRSTKKCEISIYVGNLPST 30
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 190 (71.9 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 43/96 (44%), Positives = 61/96 (63%)
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 2 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPV-HPTLYQRA 270
K ER ++L Y ++ + + PV +P YQ A
Sbjct: 61 RKEERQAHLTNQYMQRMASVRAVPNPVINP--YQPA 94
Score = 111 (44.1 bits), Expect = 0.00010, P = 0.00010
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 74 FSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133
FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++ V LY +L +
Sbjct: 5 FSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV-ALAQRK 62
Query: 134 IQESASFNNLYVKNL 148
+ A N Y++ +
Sbjct: 63 EERQAHLTNQYMQRM 77
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 185 (70.2 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 38/121 (31%), Positives = 65/121 (53%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
+L +F KFG S KV+ + GKSKG+GFV + E A A++++ + G ++Y
Sbjct: 4 RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 63
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
+ +++ + + D +T NLYVKN++D +D+ L++ FS G I+S
Sbjct: 64 AQK-KVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Query: 189 K 189
K
Sbjct: 122 K 122
Score = 138 (53.6 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
DE LK F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +Y
Sbjct: 2 DE-RLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 60
Query: 231 VAIAQTKRERTSYLR 245
V AQ K ER + L+
Sbjct: 61 VGRAQKKVERQTELK 75
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 142 (55.0 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 35/104 (33%), Positives = 56/104 (53%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F +L ++ L +FSK+G + SSKV++ G S GYGFV++S+ + + AIE+L
Sbjct: 112 FVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEELDG 171
Query: 117 ATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDK 159
+ +L S + NNL++K L DVT++ L K
Sbjct: 172 YQYQNKKLLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRK 215
Score = 133 (51.9 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 32/101 (31%), Positives = 58/101 (57%)
Query: 145 VKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFV 204
+ NL ++ + NL++K + DV + +L++ F G I K+M + G SK GFV
Sbjct: 183 LSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFV 242
Query: 205 CFSNPDEANRAINTLNGILFHQK---PLYVAIAQTKRERTS 242
FS+ +A++AI+ +NG+ ++ PL V A T++++ S
Sbjct: 243 RFSSELDASKAIDAMNGVRINKDSGYPLVVKYADTEQQKIS 283
Score = 127 (49.8 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKG 200
NN V N + ++ + N++VK++ + ++ +L+ FS+ G + S K+M +G S G
Sbjct: 93 NNNSVNNKELELERD--QTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYG 150
Query: 201 FGFVCFSNPDEANRAINTLNGILFHQKPL 229
+GFV FS+P E+ AI L+G + K L
Sbjct: 151 YGFVRFSSPQESAAAIEELDGYQYQNKKL 179
Score = 121 (47.7 bits), Expect = 0.00045, P = 0.00045
Identities = 34/109 (31%), Positives = 58/109 (53%)
Query: 9 NNNDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIP--FTVNLASTID 66
NNN + T + +L + + L SA +SI +S T F +L +D
Sbjct: 722 NNNLTTTTTTTTTTNTTNLTNLESLNPLSASSSSITSNSGGGKHTNDTNLFVFHLPPFVD 781
Query: 67 NWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKL 114
+ L Q+FS+FG +QS +V+ +D G++KGYGFV++ + AL +++
Sbjct: 782 DSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEM 830
Score = 118 (46.6 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAI 216
D NL+V ++ VD+ L Q FSQ G + SV+++ + G +KG+GFV F DEA +
Sbjct: 768 DTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQ 827
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTS 242
+NG K L V + K S
Sbjct: 828 KEMNGFRIGSKFLKVKLKNEKESMNS 853
Score = 84 (34.6 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114
+L ++F FG I KV++ +G+SK GFV++S++ A AI+ +
Sbjct: 212 QLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAM 257
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 136 (52.9 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 35/105 (33%), Positives = 56/105 (53%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL++ N++D+VDE L FS G I +VK+MR SKG GF+ + N + ++ AI +
Sbjct: 108 NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENM 167
Query: 220 NGILFHQKPLYVAIA---QTKRER--TSYLRIMYAKQGPGLASTN 259
N K ++++ A +K ER T+ R + A + L N
Sbjct: 168 NNQFICNKKVHISYAFKKDSKGERHGTAAERFIAANKALNLYPLN 212
Score = 117 (46.2 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + +D L ++F + G++++ + + +G GYGFV+Y + E Y
Sbjct: 23 YIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE------YECEY 76
Query: 116 AATVEGM-ELYAPSLRAGRI-QESASFN---NLYVKNLDDDVTEEIL 157
AA + M +L+ +LR + Q+ SF+ NL++ NLDD+V E++L
Sbjct: 77 AANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKML 123
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 136 (52.9 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 35/105 (33%), Positives = 56/105 (53%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL++ N++D+VDE L FS G I +VK+MR SKG GF+ + N + ++ AI +
Sbjct: 108 NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENM 167
Query: 220 NGILFHQKPLYVAIA---QTKRER--TSYLRIMYAKQGPGLASTN 259
N K ++++ A +K ER T+ R + A + L N
Sbjct: 168 NNQFICNKKVHISYAFKKDSKGERHGTAAERFIAANKALNLYPLN 212
Score = 117 (46.2 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + +D L ++F + G++++ + + +G GYGFV+Y + E Y
Sbjct: 23 YIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE------YECEY 76
Query: 116 AATVEGM-ELYAPSLRAGRI-QESASFN---NLYVKNLDDDVTEEIL 157
AA + M +L+ +LR + Q+ SF+ NL++ NLDD+V E++L
Sbjct: 77 AANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKML 123
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 207 (77.9 bits), Expect = 9.0e-14, P = 9.0e-14
Identities = 50/170 (29%), Positives = 94/170 (55%)
Query: 72 QIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEK---LYAATVEGMELYAPS 128
++ ++FG+I+S + +GKSKG G V++ QE A + + L +T++G S
Sbjct: 378 ELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTV--S 435
Query: 129 LRAGRIQESASFNNL-YVKNLDDDVTE---EILDKNLYVKNINDDVDEIELKQYFSQCGI 184
G I+ + + +K+ + TE + D +L++ NI++ +D +K+ F++ G
Sbjct: 436 SNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGT 495
Query: 185 ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
I +KI++ +KGFGF+ FS EA +A+++LNG F K + V+ +
Sbjct: 496 IIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFS 545
Score = 163 (62.4 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 54/191 (28%), Positives = 87/191 (45%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +DN L+ FS FG+I S KV + G SKGYG+V + T +SA AIEK+
Sbjct: 277 FVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK-GISKGYGYVHFETNDSAEKAIEKVNG 335
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G + +++ N ++ +N D+ +T EIL + L N +++ LK
Sbjct: 336 TLILGKPINVERF-VSKVERYKVENKVFFRNADESITIEILQQEL--SNRFGEIESCILK 392
Query: 177 QYFS--QCGI-ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ G+ + K + I G + S D + I + KP+ +
Sbjct: 393 NDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIEINGKPITIDR 452
Query: 234 AQTKRER-TSY 243
++K ER T Y
Sbjct: 453 IKSKVERFTEY 463
Score = 141 (54.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 34/81 (41%), Positives = 45/81 (55%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN+ VD L FS G I S K+ +GISKG+G+V F D A +AI +
Sbjct: 275 NIFVKNLEKGVDNAMLYDTFSSFGNILSCKV-EFEKGISKGYGYVHFETNDSAEKAIEKV 333
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG L KP+ V +K ER
Sbjct: 334 NGTLILGKPINVERFVSKVER 354
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCG--IISSVKIMRTNRGI-SKGFGFVCFSNPDEANRAI 216
+LYV ++ DV+EI L + FS+ G I+S+ + R + + S G+ +V F N +A RA+
Sbjct: 185 SLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERAL 244
Query: 217 NTLNGILFHQKP 228
+TLN L H KP
Sbjct: 245 DTLNYTLVHGKP 256
Score = 86 (35.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYA 116
+LA+ ++ L+++FSK G + + V +D +S GY +V + A A++ L
Sbjct: 190 DLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNY 249
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
V G + + N++VKNL+ V +L
Sbjct: 250 TLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAML 290
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 192 (72.6 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 59/173 (34%), Positives = 89/173 (51%)
Query: 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG-KSKGYGFVQYSTQESALN 109
T F F +L+S +DN KL + F FGD+ +KV+ + KSKGYGFV Y +E A
Sbjct: 132 TRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAER 191
Query: 110 AIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNIN 167
AIE++ + + + R QE S N K+ D+ + D ++YV NI
Sbjct: 192 AIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN--EKSYDEIYNQTSGDNTSVYVGNIA 249
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+ E E++Q F+ G I+ V+I + +G+ FV F N D A +AI +N
Sbjct: 250 S-LTEDEIRQGFASFGRITEVRIFKM-----QGYAFVKFDNKDAAAKAIVQMN 296
Score = 155 (59.6 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 45/164 (27%), Positives = 81/164 (49%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL ST+ + +F++ G + +KV+ DG + Y FV++S A A++ + +
Sbjct: 52 NLDSTVTEDFIATLFNQIGSVTKTKVIF--DGSNDPYAFVEFSDHGQASQALQTMNKRLL 109
Query: 120 EGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
E+ ++ G+ Q D T +++V +++ +VD +L++
Sbjct: 110 LDREMKVNWAVEPGQQQSKI------------DTTRHF---HVFVGDLSSEVDNQKLREA 154
Query: 179 FSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNG 221
F G +S K++R TN SKG+GFV + +EA RAI +NG
Sbjct: 155 FQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 198
Score = 46 (21.3 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 19 PFSLYVGDLDST 30
P +LYVG+LDST
Sbjct: 45 PRTLYVGNLDST 56
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 343
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+LNG ++ L V+ +K+ +
Sbjct: 344 SLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 36/111 (32%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + E++Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGI--LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG L +P+ V A ++T + + Q P+H
Sbjct: 182 AIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG-PLH 231
Score = 109 (43.4 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 51 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 103
Query: 123 ELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
+L +++ + SAS NLYV L ++++ +++
Sbjct: 104 KLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQ 143
Score = 89 (36.4 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 343
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+LNG ++ L V+ +K+ +
Sbjct: 344 SLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 36/111 (32%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + E++Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGI--LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG L +P+ V A ++T + + Q P+H
Sbjct: 182 AIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG-PLH 231
Score = 109 (43.4 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 51 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 103
Query: 123 ELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
+L +++ + SAS NLYV L ++++ +++
Sbjct: 104 KLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQ 143
Score = 89 (36.4 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 343
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+LNG ++ L V+ +K+ +
Sbjct: 344 SLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 36/111 (32%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + E++Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGI--LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG L +P+ V A ++T + + Q P+H
Sbjct: 182 AIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG-PLH 231
Score = 109 (43.4 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 51 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 103
Query: 123 ELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
+L +++ + SAS NLYV L ++++ +++
Sbjct: 104 KLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQ 143
Score = 89 (36.4 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 343
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+LNG ++ L V+ +K+ +
Sbjct: 344 SLNGYRLGERVLQVSFKTSKQHK 366
Score = 125 (49.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 36/111 (32%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + E++Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGI--LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG L +P+ V A ++T + + Q P+H
Sbjct: 182 AIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG-PLH 231
Score = 109 (43.4 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 51 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 103
Query: 123 ELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
+L +++ + SAS NLYV L ++++ +++
Sbjct: 104 KLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQ 143
Score = 86 (35.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ ++ Q+FS++G I +S++++ Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 343
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+LNG ++ L V+ +K+ +
Sbjct: 344 SLNGYRLGERVLQVSFKTSKQHK 366
Score = 125 (49.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 36/111 (32%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + E++Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGI--LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG L +P+ V A ++T + + Q P+H
Sbjct: 182 AIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAG-PLH 231
Score = 109 (43.4 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 51 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 103
Query: 123 ELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
+L +++ + SAS NLYV L ++++ +++
Sbjct: 104 KLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQ 143
Score = 86 (35.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ ++ Q+FS++G I +S++++ Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 136 (52.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 344
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+LNG ++ L V+ +K+ +
Sbjct: 345 SLNGYRLGERVLQVSFKTSKQHK 367
Score = 122 (48.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 33/78 (42%), Positives = 44/78 (56%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + E++Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGILFHQKPLYVA 232
AI LNG QKPL A
Sbjct: 182 AIKGLNG----QKPLGAA 195
Score = 109 (43.4 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 33/100 (33%), Positives = 53/100 (53%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 51 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 103
Query: 123 ELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
+L +++ + SAS NLYV L ++++ +++
Sbjct: 104 KLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQ 143
Score = 89 (36.4 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 146 (56.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 35/100 (35%), Positives = 55/100 (55%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
+N Y ++ +D ++I NL V + ++ + EL+ FS G I S K++R G S
Sbjct: 2 SNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSL 61
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G+GFV + +A RAINTLNG+ K + V+ A+ E
Sbjct: 62 GYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 130 (50.8 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
+++ N+ D DE L Q F G +++VK++R N KGFGFV +N +EA+ AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 108 (43.1 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +FS G+I+S+K++ + G S GYGFV Y T + A AI
Sbjct: 24 VNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN---- 79
Query: 117 ATVEGMELYAPSLRAGRIQESASF---NNLYVKNLDDDVTEE 155
T+ G+ L + +++ + S+ NLY+ L +T++
Sbjct: 80 -TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK 120
Score = 73 (30.8 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAI 111
L T+ + +FS FG I +S+V+V Q G S+G F+++ + A AI
Sbjct: 113 LPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 195 (73.7 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 49/167 (29%), Positives = 84/167 (50%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL+ +D+ L + F G + S++V+ ++ G+SKG+G+V ++T E A A +
Sbjct: 242 FVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQ 301
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
A ++G E+ G+ S K D V+ E L+V N+ D DE +
Sbjct: 302 GAFIDGREIKV-DFSTGKATNSNDAAGARAKKYGDTVSPE--SDTLFVGNLPFDADEDSV 358
Query: 176 KQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+FS+ + S+++ G KGFG+V F++ ++A A LNG
Sbjct: 359 GAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNG 405
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 32/89 (35%), Positives = 51/89 (57%)
Query: 153 TEEILDK--NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR--GISKGFGFVCFSN 208
TEE DK L+V N++ +VD+ L + F CG ++S +++ T+R G SKGFG+V F+
Sbjct: 232 TEES-DKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVI-TDRESGRSKGFGYVDFAT 289
Query: 209 PDEANRAINTLNGILFHQKPLYVAIAQTK 237
P+EA +A G + + V + K
Sbjct: 290 PEEAEKAHGEKQGAFIDGREIKVDFSTGK 318
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 130 (50.8 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG + L V+ +K +
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN--RGISKGFGFVCFSNPDEANRAIN 217
NL V + ++ + ELK F G I S K++R G S G+GFV + +P +A +AIN
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126
Query: 218 TLNGILFHQKPLYVAIAQ 235
TLNG+ K + V+ A+
Sbjct: 127 TLNGLRLQTKTIKVSYAR 144
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 34/101 (33%), Positives = 51/101 (50%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 150 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 209
Query: 215 AINTLNGIL--FHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
AI LNG +P+ V A ++ ++ + Q P
Sbjct: 210 AIKGLNGQKPPGATEPITVKFANNPSQKVNHTILSQLYQSP 250
Score = 109 (43.4 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
Identities = 34/107 (31%), Positives = 55/107 (51%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ--DGKSKGYGFVQYSTQESALNAIEKLY 115
VN L + +L +F G+I+S K+V + +G+S GYGFV Y + A AI
Sbjct: 70 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN--- 126
Query: 116 AATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 127 --TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 171
Score = 90 (36.7 bits), Expect = 8.5e-11, Sum P(2) = 8.5e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 132 (51.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHKS 351
Score = 124 (48.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 105 LNGLRLQTKTIKVSYAR 121
Score = 122 (48.0 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 127 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 186
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 187 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 236
Score = 105 (42.0 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 48 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 103
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 104 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 148
Score = 90 (36.7 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 133 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 136 (52.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/96 (36%), Positives = 52/96 (54%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
NN +D TE+ NL V + ++ + ELK F G I S K++R G S
Sbjct: 22 NNNCSSPVDSGNTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 80
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
G+GFV + +P +A +AINTLNG+ K + V+ A+
Sbjct: 81 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116
Score = 129 (50.5 bits), Expect = 9.9e-13, Sum P(2) = 9.9e-13
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG + L V+ K +
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
Score = 122 (48.0 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 36/101 (35%), Positives = 51/101 (50%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ GIS+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGIL--FHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
AI LNG +P+ V A ++T+ + Q P
Sbjct: 182 AIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222
Score = 108 (43.1 bits), Expect = 9.9e-13, Sum P(2) = 9.9e-13
Identities = 34/106 (32%), Positives = 54/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 98
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 99 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 143
Score = 89 (36.4 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 132 (51.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHKS 366
Score = 124 (48.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 122 (48.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 189 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 238
Score = 105 (42.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 105
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 106 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 150
Score = 90 (36.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 132 (51.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHKS 366
Score = 124 (48.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 122 (48.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 189 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 238
Score = 105 (42.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 105
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 106 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 150
Score = 90 (36.7 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 137 (53.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 139 SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGI 197
+ NN +D TE+ NL V + ++ + ELK F G I S K++R G
Sbjct: 20 TINNNCSSPVDSGNTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
S G+GFV + +P +A +AINTLNG+ K + V+ A+
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116
Score = 129 (50.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG + L V+ K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 122 (48.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 36/101 (35%), Positives = 51/101 (50%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ GIS+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGIL--FHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
AI LNG +P+ V A ++T+ + Q P
Sbjct: 182 AIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222
Score = 108 (43.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 34/106 (32%), Positives = 54/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 98
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 99 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 143
Score = 89 (36.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 136 (52.9 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 35/96 (36%), Positives = 52/96 (54%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
NN +D TE+ NL V + ++ + ELK F G I S K++R G S
Sbjct: 22 NNNCSSPVDSGNTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 80
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
G+GFV + +P +A +AINTLNG+ K + V+ A+
Sbjct: 81 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116
Score = 129 (50.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG + L V+ K +
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
Score = 122 (48.0 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 36/101 (35%), Positives = 51/101 (50%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ GIS+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGIL--FHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
AI LNG +P+ V A ++T+ + Q P
Sbjct: 182 AIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222
Score = 108 (43.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 34/106 (32%), Positives = 54/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 98
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 99 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 143
Score = 89 (36.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 132 (51.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHKS 371
Score = 126 (49.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 38/111 (34%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A ++TS + Q P P+H
Sbjct: 194 AIKGLNGQKPSGATEPITVKFANNPSQKTSQALLSQLYQSPNRRYPG-PLH 243
Score = 124 (48.7 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 105 (42.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 110
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 111 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 155
Score = 90 (36.7 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Score = 37 (18.1 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 259 NFPVHPTLYQRALQVYQAPGFRHGG 283
N P T Q+YQ+P R+ G
Sbjct: 216 NNPSQKTSQALLSQLYQSPNRRYPG 240
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 132 (51.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHKS 371
Score = 125 (49.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 36/125 (28%), Positives = 59/125 (47%)
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKN-LDDDVTEEILDKNLYVKNINDDVD 171
K+ +T+E P+ S NN + + T + NL V + ++
Sbjct: 7 KMIISTMEPQVSNGPT---SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMT 63
Query: 172 EIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ E + F G I S K++R G S G+GFV + +P +A +AINTLNG+ K +
Sbjct: 64 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 123
Query: 231 VAIAQ 235
V+ A+
Sbjct: 124 VSYAR 128
Score = 122 (48.0 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 194 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 243
Score = 105 (42.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 110
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 111 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 155
Score = 90 (36.7 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 134 (52.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 36/100 (36%), Positives = 53/100 (53%)
Query: 137 SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-R 195
S + NN +D TE+ NL V + + + ELK F G I S K++R
Sbjct: 47 SNAINNCS-SPIDSGNTEDS-KTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKIT 104
Query: 196 GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
G S G+GFV + +P +A +AINTLNG+ K + V+ A+
Sbjct: 105 GQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYAR 144
Score = 129 (50.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG + L V+ K +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 116 (45.9 bits), Expect = 0.00049, P = 0.00049
Identities = 32/74 (43%), Positives = 42/74 (56%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 150 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEE 209
Query: 215 AINTLNGILFHQKP 228
AI LNG QKP
Sbjct: 210 AIKGLNG----QKP 219
Score = 109 (43.4 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 34/106 (32%), Positives = 55/106 (51%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L ++ +L +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 71 VNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN---- 126
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 127 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 171
Score = 91 (37.1 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 132 (51.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHKS 373
Score = 124 (48.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 122 (48.0 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 182 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 231
Score = 105 (42.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 43 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 98
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 99 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 143
Score = 90 (36.7 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 132 (51.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHKS 373
Score = 124 (48.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 122 (48.0 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 182 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 231
Score = 105 (42.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 43 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 98
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 99 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 143
Score = 90 (36.7 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 132 (51.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHKS 380
Score = 124 (48.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 189 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 238
Score = 105 (42.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 105
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 106 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 150
Score = 90 (36.7 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 132 (51.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHKS 380
Score = 124 (48.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 189 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 238
Score = 105 (42.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 50 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 105
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 106 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 150
Score = 90 (36.7 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 135 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 34/100 (34%), Positives = 55/100 (55%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
+N Y ++ +D ++I NL V + ++ + EL+ FS G + S K++R G S
Sbjct: 2 SNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 61
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G+GFV + +A RAINTLNG+ K + V+ A+ E
Sbjct: 62 GYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 127 (49.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
+++ N+ D DE L Q F G +++VK++R N KGFGFV +N +EA AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 108 (43.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 27/91 (29%), Positives = 50/91 (54%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+L +FS G+++S+K++ + G S GYGFV Y T + A AI T+ G+ L +
Sbjct: 35 ELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN-----TLNGLRLQSK 89
Query: 128 SLRAGRIQESASF---NNLYVKNLDDDVTEE 155
+++ + S+ NLY+ L ++T++
Sbjct: 90 TIKVSYARPSSEVIKDANLYISGLPRNMTQK 120
Score = 73 (30.8 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 70 LHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAI 111
+ +FS+FG I +S+V+V Q G S+G F+++ + A AI
Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 140 (54.3 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 33/100 (33%), Positives = 55/100 (55%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
+N Y ++ +D ++I NL V + ++ + EL+ FS G + S K++R G S
Sbjct: 2 SNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSL 61
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G+GFV + +A RAI+TLNG+ K + V+ A+ E
Sbjct: 62 GYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 127 (49.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
+++ N+ D DE L Q F G +++VK++R N KGFGFV +N +EA AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 108 (43.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 30/102 (29%), Positives = 54/102 (52%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +FS G+++S+K++ + G S GYGFV Y T + A AI
Sbjct: 24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI----- 78
Query: 117 ATVEGMELYAPSLRAGRIQESASF---NNLYVKNLDDDVTEE 155
+T+ G+ L + +++ + S+ NLY+ L +T++
Sbjct: 79 STLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK 120
Score = 76 (31.8 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAI 111
L T+ + +FS+FG I +S+V+V Q G S+G F+++ + A AI
Sbjct: 113 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 140 (54.3 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 33/100 (33%), Positives = 55/100 (55%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
+N Y ++ +D ++I NL V + ++ + EL+ FS G + S K++R G S
Sbjct: 2 SNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSL 61
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G+GFV + +A RAI+TLNG+ K + V+ A+ E
Sbjct: 62 GYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 127 (49.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
+++ N+ D DE L Q F G +++VK++R N KGFGFV +N +EA AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 108 (43.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 30/102 (29%), Positives = 54/102 (52%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +FS G+++S+K++ + G S GYGFV Y T + A AI
Sbjct: 24 VNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI----- 78
Query: 117 ATVEGMELYAPSLRAGRIQESASF---NNLYVKNLDDDVTEE 155
+T+ G+ L + +++ + S+ NLY+ L +T++
Sbjct: 79 STLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK 120
Score = 76 (31.8 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAI 111
L T+ + +FS+FG I +S+V+V Q G S+G F+++ + A AI
Sbjct: 113 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 132 (51.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHKS 382
Score = 124 (48.7 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 123 LNGLRLQTKTIKVSYAR 139
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 145 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 204
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 205 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 254
Score = 105 (42.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 66 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 121
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 122 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 166
Score = 90 (36.7 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 151 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 132 (51.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHKS 384
Score = 124 (48.7 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 111 LNGLRLQTKTIKVSYAR 127
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 133 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 192
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 193 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 242
Score = 105 (42.0 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 54 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 109
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 110 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 154
Score = 90 (36.7 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 139 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 132 (51.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHKS 385
Score = 125 (49.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 36/125 (28%), Positives = 59/125 (47%)
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKN-LDDDVTEEILDKNLYVKNINDDVD 171
K+ +T+E P+ S NN + + T + NL V + ++
Sbjct: 7 KMIISTMEPQVSNGPT---SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMT 63
Query: 172 EIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ E + F G I S K++R G S G+GFV + +P +A +AINTLNG+ K +
Sbjct: 64 QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 123
Query: 231 VAIAQ 235
V+ A+
Sbjct: 124 VSYAR 128
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 194 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 243
Score = 105 (42.0 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 110
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 111 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 155
Score = 90 (36.7 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 132 (51.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHKS 385
Score = 124 (48.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A +++S + Q P P+H
Sbjct: 194 AIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG-PLH 243
Score = 105 (42.0 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 55 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 110
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 111 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 155
Score = 90 (36.7 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 140 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 129 (50.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG + L V+ K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
NN +D TE+ NL + ++ + ELK F G I S K++R G S
Sbjct: 22 NNNCSSPVDSGNTEDS-KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 80
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
G+GFV + +P +A +AINTLNG+ K + V+ A+
Sbjct: 81 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116
Score = 122 (48.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 36/101 (35%), Positives = 51/101 (50%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ GIS+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGIL--FHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
AI LNG +P+ V A ++T+ + Q P
Sbjct: 182 AIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222
Score = 107 (42.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 31/95 (32%), Positives = 50/95 (52%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+L +F G+I+S K+V + G+S GYGFV Y + A AI T+ G+ L
Sbjct: 54 ELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN-----TLNGLRLQTK 108
Query: 128 SLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
+++ + SAS NLYV L +T++ L++
Sbjct: 109 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 143
Score = 89 (36.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 129 (50.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG + L V+ K +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
NN +D TE+ NL + ++ + ELK F G I S K++R G S
Sbjct: 22 NNNCSSPVDSGNTEDS-KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 80
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
G+GFV + +P +A +AINTLNG+ K + V+ A+
Sbjct: 81 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116
Score = 122 (48.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 36/101 (35%), Positives = 51/101 (50%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ GIS+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNGIL--FHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
AI LNG +P+ V A ++T+ + Q P
Sbjct: 182 AIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 222
Score = 107 (42.7 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 31/95 (32%), Positives = 50/95 (52%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+L +F G+I+S K+V + G+S GYGFV Y + A AI T+ G+ L
Sbjct: 54 ELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN-----TLNGLRLQTK 108
Query: 128 SLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
+++ + SAS NLYV L +T++ L++
Sbjct: 109 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 143
Score = 89 (36.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 128 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 186 (70.5 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 58/186 (31%), Positives = 91/186 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL +D+ L +F + G ++ S+V+ ++D +S+G+GFV ST E A A+EK
Sbjct: 116 FVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFN 175
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ V G L + A R +Y D I YV N+ DVD L
Sbjct: 176 SFEVNGRRLTV-NRAAPRGSRPERQPRVY------DAAFRI-----YVGNLPWDVDSGRL 223
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
++ FS+ G + +++ G S+GFGFV SN +E N AI L+G + + V +A
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Query: 235 QTKRER 240
+ + R
Sbjct: 284 EERTRR 289
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 137 (53.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 139 SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGI 197
+ NN +D TE+ NL V + ++ + ELK F G I S K++R G
Sbjct: 48 TINNNCSSPVDSGNTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 106
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
S G+GFV + +P +A +AINTLNG+ K + V+ A+
Sbjct: 107 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 144
Score = 129 (50.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG + L V+ K +
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 36/101 (35%), Positives = 51/101 (50%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ GIS+G GF+ F EA
Sbjct: 150 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 209
Query: 215 AINTLNGIL--FHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
AI LNG +P+ V A ++T+ + Q P
Sbjct: 210 AIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 250
Score = 108 (43.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 34/106 (32%), Positives = 54/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 71 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 126
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 127 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 171
Score = 89 (36.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 156 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 137 (53.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 139 SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGI 197
+ NN +D TE+ NL V + ++ + ELK F G I S K++R G
Sbjct: 49 TINNNCSSPVDSGNTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 107
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
S G+GFV + +P +A +AINTLNG+ K + V+ A+
Sbjct: 108 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 145
Score = 129 (50.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG + L V+ K +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 36/101 (35%), Positives = 51/101 (50%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ GIS+G GF+ F EA
Sbjct: 151 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 210
Query: 215 AINTLNGIL--FHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
AI LNG +P+ V A ++T+ + Q P
Sbjct: 211 AIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 251
Score = 108 (43.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 34/106 (32%), Positives = 54/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 72 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 127
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 128 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 172
Score = 89 (36.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 157 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 34/100 (34%), Positives = 55/100 (55%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
+N Y ++ +D ++I NL V + ++ + EL+ FS G + S K++R G S
Sbjct: 2 SNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 61
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G+GFV + +A RAINTLNG+ K + V+ A+ E
Sbjct: 62 GYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 127 (49.8 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
+++ N+ D DE L Q F G +++VK++R N KGFGFV +N +EA AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 107 (42.7 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+L +FS G+++S+K++ + G S GYGFV Y T + A AI T+ G+ L +
Sbjct: 35 ELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN-----TLNGLRLQSK 89
Query: 128 SLRAGRIQESASF---NNLYVKNLDDDVTEE 155
+++ + S+ NLY+ L +T++
Sbjct: 90 TIKVSYARPSSEVIKDANLYISGLPRSMTQK 120
Score = 73 (30.8 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 70 LHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAI 111
+ +FS+FG I +S+V+V Q G S+G F+++ + A AI
Sbjct: 122 VEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 132 (51.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N++ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHKS 408
Score = 124 (48.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E + F G I S K++R G S G+GFV + +P +A +AINT
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 149 LNGLRLQTKTIKVSYAR 165
Score = 119 (46.9 bits), Expect = 0.00025, P = 0.00025
Identities = 38/111 (34%), Positives = 53/111 (47%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G S+G GF+ F EA
Sbjct: 171 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEE 230
Query: 215 AINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
AI LNG +P+ V A ++TS + Q P P+H
Sbjct: 231 AIKGLNGQKPSGAAEPITVKFANNPSQKTSQALLSQLYQSPNRRYPG-PLH 280
Score = 105 (42.0 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 92 VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 147
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 148 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 192
Score = 90 (36.7 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 177 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 259 NFPVHPTLYQRALQVYQAPGFRHGG 283
N P T Q+YQ+P R+ G
Sbjct: 253 NNPSQKTSQALLSQLYQSPNRRYPG 277
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 131 (51.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + ELK F G I S K++R G S G+GFV + P +A +AINT
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 127 (49.8 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG + L V+ K +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 124 (48.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 35/101 (34%), Positives = 52/101 (51%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ G+S+G GF+ F EA
Sbjct: 151 IRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEE 210
Query: 215 AINTLNGIL--FHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
AI LNG +P+ V A +++S + + Q P
Sbjct: 211 AIKGLNGQKPPGATEPITVKFANNPSQKSSQALLSHLYQSP 251
Score = 109 (43.4 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 34/106 (32%), Positives = 54/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 72 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAIN---- 127
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 128 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 172
Score = 94 (38.1 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS+FG I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 157 YVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 141 (54.7 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 34/100 (34%), Positives = 54/100 (54%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
+N Y ++ +D +I NL V + ++ + EL+ FS G + S K++R G S
Sbjct: 2 SNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 61
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G+GFV + +A RAINTLNG+ K + V+ A+ E
Sbjct: 62 GYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 127 (49.8 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
+++ N+ D DE L Q F G +++VK++R N KGFGFV +N +EA AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 106 (42.4 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+L +FS G+++S+K++ + G S GYGFV Y T + A AI T+ G+ L +
Sbjct: 35 ELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN-----TLNGLRLQSK 89
Query: 128 SLRAGRIQESASF---NNLYVKNLDDDVTEE 155
+++ + S+ NLY+ L +T++
Sbjct: 90 TIKVSYARPSSEVIKDANLYISGLPRTMTQK 120
Score = 76 (31.8 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAI 111
L T+ + +FS+FG I +S+V+V Q G S+G F+++ + A AI
Sbjct: 113 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 146 (56.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 34/102 (33%), Positives = 56/102 (54%)
Query: 139 SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGI 197
+ +N Y ++ +D ++I NL V + ++ + EL+ FS G + S K++R G
Sbjct: 8 TMSNGYEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGH 67
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G+GFV + +A RAINTLNG+ K + V+ A+ E
Sbjct: 68 SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 109
Score = 127 (49.8 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
+++ N+ D DE L Q F G +++VK++R N KGFGFV +N +EA AI +L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ K +
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
Score = 106 (42.4 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+L +FS G+++S+K++ + G S GYGFV Y T + A AI T+ G+ L +
Sbjct: 43 ELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN-----TLNGLRLQSK 97
Query: 128 SLRAGRIQESASF---NNLYVKNLDDDVTEE 155
+++ + S+ NLY+ L +T++
Sbjct: 98 TIKVSYARPSSEVIKDANLYISGLPRTMTQK 128
Score = 76 (31.8 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAI 111
L T+ + +FS+FG I +S+V+V Q G S+G F+++ + A AI
Sbjct: 121 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 172
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 150 (57.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINT 218
NL+V NI + + +L F Q GI+ S K+ + N G+SKGFGFV + NP AN AI+
Sbjct: 404 NLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISN 463
Query: 219 LNGILFHQKPLYVAIAQT 236
L+G + K L V++ QT
Sbjct: 464 LHGQMMAGKKLKVSLKQT 481
Score = 136 (52.9 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 34/102 (33%), Positives = 54/102 (52%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKG 200
NNL VK D + +E L L+V + +E ++++ F G++ + I+R SKG
Sbjct: 75 NNLQVKYADSE--QEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESKG 132
Query: 201 FGFVCFSNPDEANRAINTLNGILFH--QKPLYVAIAQTKRER 240
GF+ F N + A AI TLNG+ PL V A T++++
Sbjct: 133 CGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKDK 174
Score = 86 (35.3 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L + + ++ ++F G ++ ++ + +SKG GF+++ +ESAL+AI
Sbjct: 94 FVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAI----- 148
Query: 117 ATVEGMEL 124
AT+ GM+L
Sbjct: 149 ATLNGMKL 156
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 142 (55.0 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 34/102 (33%), Positives = 55/102 (53%)
Query: 139 SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGI 197
+ +N Y ++ +D +I NL V + ++ + EL+ FS G + S K++R G
Sbjct: 27 TMSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGH 86
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S G+GFV + +A RAINTLNG+ K + V+ A+ E
Sbjct: 87 SLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 128
Score = 127 (49.8 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
+++ N+ D DE L Q F G +++VK++R N KGFGFV +N +EA AI +L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ K +
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
Score = 106 (42.4 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+L +FS G+++S+K++ + G S GYGFV Y T + A AI T+ G+ L +
Sbjct: 62 ELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN-----TLNGLRLQSK 116
Query: 128 SLRAGRIQESASF---NNLYVKNLDDDVTEE 155
+++ + S+ NLY+ L +T++
Sbjct: 117 TIKVSYARPSSEVIKDANLYISGLPRTMTQK 147
Score = 76 (31.8 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAI 111
L T+ + +FS+FG I +S+V+V Q G S+G F+++ + A AI
Sbjct: 140 LPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 191
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 155 (59.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 36/100 (36%), Positives = 56/100 (56%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
+N Y ++DD ++I NL V + ++ + EL+ FS G + S K++R G S
Sbjct: 2 SNGYEDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 61
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G+GFV + N +A RAINTLNG+ K + V+ A+ E
Sbjct: 62 GYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE 101
Score = 130 (50.8 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
+++ N+ D DE L Q F G +++VK++R N KGFGFV +N +EA AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ +K +
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
Score = 100 (40.3 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+L +FS G+++S+K++ + G S GYGFV Y + A AI T+ G+ L +
Sbjct: 35 ELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN-----TLNGLRLQSK 89
Query: 128 SLR---AGRIQESASFNNLYVKNLDDDVTEE 155
+++ A E+ NLY+ L +T++
Sbjct: 90 TIKVSFARPSSETIKDANLYISGLPRTMTQK 120
Score = 68 (29.0 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAI 111
L T+ + +F FG I +S+V+V Q G S+G F+++ + A AI
Sbjct: 113 LPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAI 164
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 157 (60.3 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 36/100 (36%), Positives = 57/100 (57%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199
+N Y ++DD ++I NL V + ++ + EL+ FS G + S K++R G S
Sbjct: 2 SNGYGDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 61
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G+GFV + N +A RAINTLNG+ K + V++A+ E
Sbjct: 62 GYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSE 101
Score = 127 (49.8 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
+++ N+ D DE L Q F G +++VK++R N KGFGFV +N +EA AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V +K +
Sbjct: 306 NGYRLGDKTLQVFFKTSKSHK 326
Score = 103 (41.3 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+L +FS G+++S+K++ + G S GYGFV Y + A AI T+ G+ L +
Sbjct: 35 ELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN-----TLNGLRLQSK 89
Query: 128 SLR---AGRIQESASFNNLYVKNLDDDVTEE 155
+++ A ES NLY+ L +T++
Sbjct: 90 TIKVSVARPSSESIKDANLYISGLPRTMTQK 120
Score = 67 (28.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAI 111
L T+ + +F FG I +S+V+V Q G S+G F+++ + A AI
Sbjct: 113 LPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAI 164
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 137 (53.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 139 SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGI 197
+ NN +D TE+ NL V + ++ + ELK F G I S K++R G
Sbjct: 49 TINNNCSSPVDSGNTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 107
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
S G+GFV + +P +A +AINTLNG+ K + V+ A+
Sbjct: 108 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 145
Score = 124 (48.7 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 220 NGILFHQKPLYV 231
NG + L V
Sbjct: 368 NGYRLGDRVLQV 379
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 36/101 (35%), Positives = 51/101 (50%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ GIS+G GF+ F EA
Sbjct: 151 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 210
Query: 215 AINTLNGIL--FHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
AI LNG +P+ V A ++T+ + Q P
Sbjct: 211 AIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSP 251
Score = 108 (43.1 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 34/106 (32%), Positives = 54/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 72 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 127
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 128 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 172
Score = 89 (36.4 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 157 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 153 (58.9 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 33/90 (36%), Positives = 55/90 (61%)
Query: 149 DDDVTEEILDK--NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVC 205
+D + +E++D NL V + ++ + EL+ FS G + S K++R G S G+GFV
Sbjct: 22 EDHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 81
Query: 206 FSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ NP++A RAI+TLNG+ K + V+ A+
Sbjct: 82 YLNPNDAERAISTLNGLRLQSKTIKVSYAR 111
Score = 123 (48.4 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
+++ N+ D DE L Q F G +++VK++R N KGFGFV ++ +EA AI +L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ +K +
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
Score = 106 (42.4 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 34/119 (28%), Positives = 61/119 (51%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +FS G+++S+K++ + G S GYGFV Y A AI
Sbjct: 38 VNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAI----- 92
Query: 117 ATVEGMELYAPSLRAGRIQESA-SFN--NLYVKNLDDDVTEEILDKNL--YVKNINDDV 170
+T+ G+ L + +++ + S+ S NLY+ L +T++ +++ Y + IN V
Sbjct: 93 STLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRV 151
Score = 77 (32.2 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
L T+ + ++F ++G I +S+V+V Q G S+G F+++ + A +AI+ L
Sbjct: 127 LPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDL 181
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 126 (49.4 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 36/91 (39%), Positives = 49/91 (53%)
Query: 138 ASFNNLYVKNLDDDVT------EEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIM 191
+SFN L ++N V+ ++I NLYV I + EL+ F G I + +I+
Sbjct: 101 SSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRIL 160
Query: 192 RTN-RGISKGFGFVCFSNPDEANRAINTLNG 221
N G+SKG GFV F DEA+ AI TLNG
Sbjct: 161 SDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 121 (47.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 31/71 (43%), Positives = 40/71 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
L+V N++ D D+ L Q FSQ G I +VKI+R KG+ FV SN EA A+ +LN
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 221 GILFHQKPLYV 231
G K L V
Sbjct: 436 GTNLAGKTLQV 446
Score = 111 (44.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 35/125 (28%), Positives = 57/125 (45%)
Query: 30 TDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ 89
T R CSA ++D+ + T I + L + ++ +F+ G+I+S K+V +
Sbjct: 24 TSTQRYCSA--PNVDIGESK-TNLIINY---LPQGMTQEEVRSLFTSIGEIESCKLVRDK 77
Query: 90 -DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
G+S GYGFV Y +E AL A+ ++ + R Q S NLYV +
Sbjct: 78 VTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGS--NLYVSGI 135
Query: 149 DDDVT 153
+T
Sbjct: 136 PKSMT 140
Score = 76 (31.8 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEG 121
+L IF FG I +S+++ G SKG GFV++ ++ A AI+ L + G
Sbjct: 143 ELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSG 196
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 130 (50.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV + +P++A++AINT
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 99 LNGLKLQTKTIKVSYAR 115
Score = 129 (50.5 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 335
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+LNG + L V+ +K+ +
Sbjct: 336 SLNGYRLGDRVLQVSFKTSKQHK 358
Score = 128 (50.1 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 55/198 (27%), Positives = 84/198 (42%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISS-VKIMRTNRGISKGFGFVCFSNPDEAN 213
I D NLYV + + + +++Q FSQ G II+S + + + GIS+G GF+ F +EA
Sbjct: 121 IRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAE 180
Query: 214 RAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQV 273
AI LNG QKPL A T + + K G L + + Y L
Sbjct: 181 EAIKGLNG----QKPLGAAEPITVK----FANNPSQKTGQALLTQLYQTAARRYTGPLH- 231
Query: 274 YQAPGFRHGGMIPNGFXXXXXXXLFLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERK 333
+Q FR ++ + + + A NLT A + SP+ +
Sbjct: 232 HQTQRFRLDNLLNASYGVKRFSPITIDSMTSLAGVNLTGPT--GAGWCIFVYNLSPEADE 289
Query: 334 DILGQ--GLYPLVKKLKV 349
+L Q G + V +KV
Sbjct: 290 SVLWQLFGPFGAVTNVKV 307
Score = 97 (39.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + + +F G+I+S K+V + G+S GYGFV Y A AI
Sbjct: 42 VNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN---- 97
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G++L +++ + SAS NLYV L ++++ +++
Sbjct: 98 -TLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQ 142
Score = 86 (35.3 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ--DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ + Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 127 YVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGL 186
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 140 (54.3 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 36/105 (34%), Positives = 55/105 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ IFS FG+I S KV + G KGYGFV + QESA AI+ +
Sbjct: 93 FIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNG 151
Query: 117 ATVEGMELYAPSLRAGRIQESA------SFNNLYVKNLDDDVTEE 155
+ +++ ++ + +E+ + VK+ ++D EE
Sbjct: 152 MFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 133 (51.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ +D L FS G I S K+ +G KG+GFV F + A RAI+ +
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAM 149
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
NG+ + + ++V ++ +ER + R +A+Q
Sbjct: 150 NGMFLNYRKIFVGRFKSHKEREAE-RGAWARQ 180
Score = 74 (31.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L++ FS G I S ++ + +S GY +V Y A A+E L ++G +
Sbjct: 18 LYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMW 77
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R +++S N+++KNL + + L
Sbjct: 78 SQRDPSLRKSG-VGNVFIKNLGKTIDNKAL 106
Score = 37 (18.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L +VTE +L
Sbjct: 3 SLYVGDLHPEVTEAML 18
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 140 (54.3 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 36/105 (34%), Positives = 55/105 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ IFS FG+I S KV + G KGYGFV + QESA AI+ +
Sbjct: 93 FIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNG 151
Query: 117 ATVEGMELYAPSLRAGRIQESA------SFNNLYVKNLDDDVTEE 155
+ +++ ++ + +E+ + VK+ ++D EE
Sbjct: 152 MFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 133 (51.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ +D L FS G I S K+ +G KG+GFV F + A RAI+ +
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAM 149
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
NG+ + + ++V ++ +ER + R +A+Q
Sbjct: 150 NGMFLNYRKIFVGRFKSHKEREAE-RGAWARQ 180
Score = 74 (31.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L++ FS G I S ++ + +S GY +V Y A A+E L ++G +
Sbjct: 18 LYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMW 77
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R +++S N+++KNL + + L
Sbjct: 78 SQRDPSLRKSG-VGNVFIKNLGKTIDNKAL 106
Score = 37 (18.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L +VTE +L
Sbjct: 3 SLYVGDLHPEVTEAML 18
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 139 (54.0 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 36/105 (34%), Positives = 55/105 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ IFS FG+I S KV + G KGYGFV + QESA AI+ +
Sbjct: 93 FIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDVMNG 151
Query: 117 ATVEGMELYAPSLRAGRIQESA------SFNNLYVKNLDDDVTEE 155
+ +++ ++ + +E+ + VK+ ++D EE
Sbjct: 152 MFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 133 (51.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ +D L FS G I S K+ +G KG+GFV F + A RAI+ +
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVM 149
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
NG+ + + ++V ++ +ER + R +A+Q
Sbjct: 150 NGMFLNYRKIFVGRFKSHKEREAE-RGAWARQ 180
Score = 74 (31.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L++ FS G I S ++ + +S GY +V Y A A+E L ++G +
Sbjct: 18 LYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMW 77
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R +++S N+++KNL + + L
Sbjct: 78 SQRDPSLRKSG-VGNVFIKNLGKTIDNKAL 106
Score = 37 (18.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L +VTE +L
Sbjct: 3 SLYVGDLHPEVTEAML 18
>POMBASE|SPAC1610.03c [details] [associations]
symbol:crp79 "poly(A) binding protein Crp79"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006406
"mRNA export from nucleus" evidence=IMP] [GO:0008143 "poly(A) RNA
binding" evidence=IDA] [GO:0030437 "ascospore formation"
evidence=IDA] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0061013 "regulation of mRNA catabolic process" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC1610.03c GO:GO:0005634 GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0006406 GO:GO:0030437
eggNOG:COG0724 GO:GO:0008143 GO:GO:0061013 EMBL:AF432874
EMBL:AB054316 RefSeq:NP_001018242.1 ProteinModelPortal:Q9P6M8
STRING:Q9P6M8 EnsemblFungi:SPAC1610.03c.1 GeneID:3361521
KEGG:spo:SPAC1610.03c OrthoDB:EOG486CPJ NextBio:20811563
Uniprot:Q9P6M8
Length = 710
Score = 165 (63.1 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 39/95 (41%), Positives = 59/95 (62%)
Query: 160 NLYVKNINDDVD--EIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
NLYVKN++D V + +L+ FS G I+SS+ N GISKG+GFV F + A RA
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAK 442
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
+TLNG++ +K ++V A+ K +R L+ +A +
Sbjct: 443 DTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFANK 477
Score = 66 (28.3 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 55 IPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEK 113
+P ++ NL + + L+ F + G ++ + V D + YG V + ES NAIEK
Sbjct: 203 LPLSILNLPAEVTPIDLYNHFKQAGVVKGTAVSQFLDQRGFRYGEVIMDSVESCQNAIEK 262
Query: 114 LYAATVEG 121
L +G
Sbjct: 263 LNNVPYKG 270
Score = 55 (24.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 30/133 (22%), Positives = 62/133 (46%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQS--SKVVVSQDGKSKG-----------YGFVQYSTQES 106
N+ S + + ++ + FSK+G ++S +++ S K K YGFV++ ES
Sbjct: 23 NIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFVNAES 82
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
++ T+ +L +++A R+ A + K D +T + + + ++N
Sbjct: 83 IEEVLKDAKGMTLGQRKL---TIKA-RVVNPAKLTDKKFKPNDTSITANVFNPS--IQN- 135
Query: 167 NDDVDEIE--LKQ 177
N D + ++ LKQ
Sbjct: 136 NTDEENVKPGLKQ 148
>WB|WBGene00006331 [details] [associations]
symbol:sup-26 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0005737 GO:GO:0040010 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003730
EMBL:Z50874 GeneTree:ENSGT00630000089747 GeneID:175551
KEGG:cel:CELE_R10E4.2 CTD:175551 RefSeq:NP_001254892.1
ProteinModelPortal:D5MCR3 SMR:D5MCR3 EnsemblMetazoa:R10E4.2q
WormBase:R10E4.2q ArrayExpress:D5MCR3 Uniprot:D5MCR3
Length = 476
Score = 123 (48.4 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 30/93 (32%), Positives = 52/93 (55%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L ++ SK+G+I S+K ++ + KGYGFV + + ++A A++ L EG++
Sbjct: 164 LREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGL---NTEGVQAQMAK 220
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNL 161
L+ Q+ NLY+ NL D TE++L+ L
Sbjct: 221 LQ----QQEQDPTNLYIANLPLDFTEQMLETEL 249
Score = 107 (42.7 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 44/171 (25%), Positives = 72/171 (42%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLY+ N+ D E L+ ++ G++ S +I+RT S+G GF + ++ I+ L
Sbjct: 230 NLYIANLPLDFTEQMLETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEKCEVIISAL 289
Query: 220 NGILFH----QKP-LYVAIAQTKRERTSYLR---IMYAKQGPGLASTNFPVHPT-LYQRA 270
NG F + P L + A T R+ + ++ Q P + + + HP +YQ+
Sbjct: 290 NGGRFDTMSKEGPALLIKQADTGRKSKHSMNNPEMLQRMQYPQVYQSYYGYHPAAVYQQH 349
Query: 271 LQVY----QAPGFRHGGMIP--NGFXXXXXXXLFLTRAGQAAANNLTNGNQ 315
V Q G GG P NG ++ AG + G Q
Sbjct: 350 YDVNSLASQMGGMHVGGGNPQANGGGDMYGAHMYGQNAGGQGGQGVGQGGQ 400
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 183 (69.5 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 53/190 (27%), Positives = 90/190 (47%)
Query: 41 ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFV 99
A I S + T F L+ +D+ L Q F ++G I ++V++ Q G+SKGYG+V
Sbjct: 250 AKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYV 309
Query: 100 QYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK 159
+ T E+A A+ ++G + L R + N D ++E
Sbjct: 310 DFETPEAAKAAVAANGTKEIDG-RMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEP--SD 366
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINT 218
++V N++ + E +L F CG I S+++ + G KGFG+V FS+ D A + +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE- 425
Query: 219 LNGILFHQKP 228
+NG +P
Sbjct: 426 MNGHFIAGRP 435
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 182 (69.1 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 70/262 (26%), Positives = 119/262 (45%)
Query: 42 SIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQ 100
S +SA + FI F L +T + L IFS FG+I S +V+V + G S+G+GFV+
Sbjct: 90 STSSNSANSGNLFISF---LPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVK 146
Query: 101 YSTQESALNAIEKLYAATVEGMEL---YAPS-LRAGRIQESASFN----------NLYVK 146
+ SA AI + A VE L +A S + S + N N
Sbjct: 147 FKDVASAQYAINSMNGAKVENKTLLVRFANSDPNSNNTNNSNNNNDDDNNNNNNNNNSNN 206
Query: 147 NLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVC 205
N +++ E+ + N++++ + + D+ +L + FS G ++ S ++ S+G G V
Sbjct: 207 NNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVR 266
Query: 206 FSNPDEANRAINTLNGILFH--QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
+ + A A+ +LNG + +KPL V A + E+ + + KQ + F +
Sbjct: 267 YIDTQSAINAVKSLNGFILQDPEKPLIVRFADNEDEKKQKRQKLQQKQVR--QNMRFSPY 324
Query: 264 PTLYQRALQVYQAPGFRHGGMI 285
P Q+ Q Q G M+
Sbjct: 325 PQQQQQQQQQQQQMMNSSGAMM 346
Score = 128 (50.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDEANRAINT 218
NLYV N+ D D+ L + FS CG I+SVKI+R + +G+GFV + ++ AIN+
Sbjct: 383 NLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINS 442
Query: 219 LNGILFHQKPLYVA 232
+NG+ K + V+
Sbjct: 443 INGVQVGGKTISVS 456
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 140 (54.3 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 37/105 (35%), Positives = 54/105 (51%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ IFS FG+I S KV + G KGYGFV + QESA AI+ L
Sbjct: 93 FIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNG 151
Query: 117 ATVEGMELYAPSLRAGRIQESA------SFNNLYVKNLDDDVTEE 155
+ +++ ++ + +E+ + K+ DDD +E
Sbjct: 152 MFLNYRKIFVGRFKSHKEREAERGAWARQSTSADFKDFDDDSDDE 196
Score = 135 (52.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ +D L FS G I S K+ +G KG+GFV F + A RAI+ L
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAL 149
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
NG+ + + ++V ++ +ER + R +A+Q
Sbjct: 150 NGMFLNYRKIFVGRFKSHKEREAE-RGAWARQ 180
Score = 69 (29.3 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L++ FS G I S ++ + +S GY +V Y A A+E + + G +
Sbjct: 18 LYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETMNFDVINGRPVRIMW 77
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R +++S N+++KNL + + L
Sbjct: 78 SQRDPSLRKSG-VGNVFIKNLGKTIDNKAL 106
Score = 38 (18.4 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L +VTE +L
Sbjct: 3 SLYVGDLHPEVTESML 18
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 140 (54.3 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 36/105 (34%), Positives = 55/105 (52%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ IFS FG+I S KV + G KGYGFV + QESA AI+ +
Sbjct: 93 FIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGP-KGYGFVHFQKQESAERAIDAMNG 151
Query: 117 ATVEGMELYAPSLRAGRIQESA------SFNNLYVKNLDDDVTEE 155
+ +++ ++ + +E+ + VK+ ++D EE
Sbjct: 152 MFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196
Score = 133 (51.9 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ +D L FS G I S K+ +G KG+GFV F + A RAI+ +
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAM 149
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
NG+ + + ++V ++ +ER + R +A+Q
Sbjct: 150 NGMFLNYRKIFVGRFKSHKEREAE-RGAWARQ 180
Score = 72 (30.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP- 127
L++ FS G I S ++ + +S GY +V Y A A+E L ++G +
Sbjct: 18 LYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMW 77
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
S R +++S N+++KNL + + L
Sbjct: 78 SQRDPSLRKSG-VGNVFIKNLGKTIDNKAL 106
Score = 37 (18.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 142 NLYVKNLDDDVTEEIL 157
+LYV +L +VTE +L
Sbjct: 3 SLYVGDLHPEVTEAML 18
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 178 (67.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 54/189 (28%), Positives = 93/189 (49%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NLA +++ L +F + G ++ ++V+ +++ +S+G+GFV S+ + A A+EK
Sbjct: 153 FVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 212
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G L + A R +Y E +YV N+ DVD L
Sbjct: 213 RYDLNG-RLLTVNKAAPRGSRPERAPRVY---------EPAF--RVYVGNLPWDVDNGRL 260
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+Q FS+ G + +++ G S+GFGFV S+ DE N AI+ L+G + + V +A
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Query: 235 QTKRERTSY 243
+ + R Y
Sbjct: 321 EERPPRRGY 329
Score = 114 (45.2 bits), Expect = 0.00061, P = 0.00061
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNA 110
P F + NL +DN +L Q+FS+ G + ++VV ++ G+S+G+GFV S + A
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Query: 111 IEKLYAATVEG 121
I L +EG
Sbjct: 302 ISALDGQNLEG 312
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 172 (65.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 59/194 (30%), Positives = 96/194 (49%)
Query: 41 ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFV 99
A++D S A +I N+ T+ N +L ++ + G ++ +V+ + G+S+ +GF
Sbjct: 66 AALDPSSEAARRVYIG---NIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFA 122
Query: 100 QYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK 159
+ E A +EKL TVEG E+ ++ I AS +L V +D + K
Sbjct: 123 TMKSVEDANAVVEKLNGNTVEGREIKV-NITEKPI---ASSPDLSVLQSEDSAFVDSPYK 178
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK--GFGFVCFSNPDEANRAIN 217
+YV N+ V + L+ FS+ G + S K+ R G SK GFGFV FS+ ++ AI
Sbjct: 179 -VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVP-GTSKSTGFGFVTFSSEEDVEAAIV 236
Query: 218 TLNGILFHQKPLYV 231
LN L + + V
Sbjct: 237 ALNNSLLEGQKIRV 250
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 178 (67.7 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 49/188 (26%), Positives = 93/188 (49%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F L+ ID+ L + F G + ++V++ + GKS+GYG+V + ++ +A A+E++
Sbjct: 171 FVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQ 230
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + + G+ S S NN K D + L++ N++ + + L
Sbjct: 231 GKEIDGRPINL-DMSTGKPHASKS-NNDRAKQYGDSQSPP--SDTLFIGNLSFNANRDNL 286
Query: 176 KQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
F + G + S ++ + KGFG+V FS+ DEA A+ +NG +P + +
Sbjct: 287 FNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFS 346
Query: 235 QTKRERTS 242
T R+ T+
Sbjct: 347 -TPRDNTN 353
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 178 (67.7 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 49/188 (26%), Positives = 93/188 (49%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F L+ ID+ L + F G + ++V++ + GKS+GYG+V + ++ +A A+E++
Sbjct: 171 FVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEMQ 230
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + + G+ S S NN K D + L++ N++ + + L
Sbjct: 231 GKEIDGRPINL-DMSTGKPHASKS-NNDRAKQYGDSQSPP--SDTLFIGNLSFNANRDNL 286
Query: 176 KQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
F + G + S ++ + KGFG+V FS+ DEA A+ +NG +P + +
Sbjct: 287 FNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFS 346
Query: 235 QTKRERTS 242
T R+ T+
Sbjct: 347 -TPRDNTN 353
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 128 (50.1 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 47/138 (34%), Positives = 70/138 (50%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISS-VKIMRT-NRGISKGFGFVCFSNPDEANRAIN 217
NL++ N++ DVDE L FS G+I+S KIMR + G S+GFGF+ + + + ++ AI
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
Query: 218 TLNGILFHQKPLYVAIA---QTKRER--TSYLRIMYAKQGPGLAS---TNFPVHPTLYQR 269
++ G + + V+ A TK ER T R++ A S T F + P
Sbjct: 173 SMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPP--SS 230
Query: 270 ALQVYQAPG-FRHGGMIP 286
A QV P F +G M P
Sbjct: 231 APQVNGLPRPFANGSMQP 248
Score = 91 (37.1 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 31/116 (26%), Positives = 57/116 (49%)
Query: 46 HSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS---KGYGFVQYS 102
HSA + L + + L ++F + G + + V V +D + + YGF++Y
Sbjct: 17 HSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVN--VYVPKDRVTNLHQNYGFIEYR 74
Query: 103 TQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFN-NLYVKNLDDDVTEEIL 157
++E A AI+ L + G + +A + ++S NL++ NLD DV E++L
Sbjct: 75 SEEDADYAIKVLNMIKLHGKPIRVN--KASQDKKSLDVGANLFIGNLDPDVDEKLL 128
Score = 37 (18.1 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 312 NGNQRAAANNSMLAVASPDERK 333
NG R AN SM V P R+
Sbjct: 235 NGLPRPFANGSMQPVPIPAPRQ 256
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 133 (51.9 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 39/148 (26%), Positives = 71/148 (47%)
Query: 95 GYGFVQYSTQESALNAIEKLYAATVEGME--LYAPSLRAGRIQESASFNNLYVKNLDDDV 152
G+GF+++S+++ A I+KL ++++G E L +QE L +N +
Sbjct: 725 GFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRREL-PENSKQSI 783
Query: 153 TEEILDKN-----LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
N + +KN+ + E+++ F+ G I SV+I + G +GFGFV F
Sbjct: 784 KSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFL 843
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQ 235
+EA A+ L F+ + L + A+
Sbjct: 844 TEEEAKNAMEALGNSHFYGRHLVLQYAE 871
Score = 108 (43.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 29/100 (29%), Positives = 56/100 (56%)
Query: 133 RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKI-M 191
+I+ F + Y K D+DV E ++V+N++ E +L++ FS+ G IS + I +
Sbjct: 339 KIKPIKYFEHDYTKE-DEDVGES---GRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPI 394
Query: 192 RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ SKG F+ + P+ A +A+N ++G +F + ++V
Sbjct: 395 DYDSKKSKGIAFILYLIPENAVQALNDMDGKVFQGRLIHV 434
Score = 98 (39.6 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI 111
T +K H F KFG + +K++ +DGKS+ +GF+ +ST++SA NA+
Sbjct: 16 TDKRFKEH--FEKFGTVTDAKII-KKDGKSRLFGFIGFSTEQSAKNAL 60
Score = 95 (38.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F NL+ + L ++FSKFG I + + D K SKG F+ Y E+A+ A+ +
Sbjct: 364 FVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDMD 423
Query: 116 AATVEGMELYA-PSLRAGRIQESASFNN 142
+G ++ P A Q S + +N
Sbjct: 424 GKVFQGRLIHVLPGKAAPAKQFSENKDN 451
Score = 74 (31.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
L VKNI E EL + FS+ G +S V ++ R I+ + + +P+EA L
Sbjct: 555 LLVKNIPFKTQEHELHELFSKFGELSRV-VLSPARTIA----LIEYIHPNEAKVGFKNLA 609
Query: 221 GILFHQKPLYV 231
FH PLY+
Sbjct: 610 YSKFHHVPLYL 620
Score = 69 (29.3 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 150 DDVTEEILDKNLYVKNINDD-VDEIE-LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
D+ T+ + KNL K N+ V + + LK Y + I + + + GFGF+ FS
Sbjct: 674 DNNTQFVYIKNLNWKTTNETLVGKFKSLKDYVN-VNIATKANPKNPSERLPCGFGFIEFS 732
Query: 208 NPDEANRAINTLNG 221
+ A I LNG
Sbjct: 733 SKQGAYECIKKLNG 746
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 154 (59.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 57/183 (31%), Positives = 88/183 (48%)
Query: 21 SLYVGDL--DSTDLL---RLCSA-LIASIDVHSAMATPTFIPFT-VNLASTIDNWKLHQI 73
SLYVGDL D T+ + + A I SI V M T + + VN D +
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 74 FSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133
+ F I+ VV ++G SKGYGFV + TQE+A AIEK+ + +++ ++ +
Sbjct: 67 MN-FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 124
Query: 134 IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT 193
+E+ L + +E N+Y+KN +D+D+ LK F + G SVK+M
Sbjct: 125 EREA----ELGAR------AKEFT--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 172
Query: 194 NRG 196
G
Sbjct: 173 ESG 175
Score = 108 (43.1 bits), Expect = 0.00045, P = 0.00045
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 64
Query: 217 NTLNGILFHQKPL 229
+T+N + KP+
Sbjct: 65 DTMNFDVIKGKPV 77
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 176 (67.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 49/182 (26%), Positives = 93/182 (51%)
Query: 57 FTVNLASTI-DNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKL 114
F NL+ + + W LHQ F +FG++ S++++ +D G+S+G+G+V+++ A A E +
Sbjct: 280 FVGNLSWNVTEEW-LHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 115 YAATVEGMEL---YAPSLRAGRIQ---ESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
++G ++ YA A + Q + + N ++ D + E L+V N+
Sbjct: 338 KEHEIDGRKINLDYATGRPANKDQGGFKERAQNR--ARSFGDQTSPE--SDTLFVGNLPF 393
Query: 169 DVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
+E + + F G + +++ G KGFG+V +S+ DEA +A N L G +
Sbjct: 394 SANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGAEIDGR 453
Query: 228 PL 229
P+
Sbjct: 454 PI 455
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 129 (50.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N DEA AI +L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG + L V+ K +
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHK 399
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 59/213 (27%), Positives = 88/213 (41%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA 117
VN L + +L +F G+I+S K+V +D K G F +Y T S L +
Sbjct: 53 VNYLPQNMTQEELKSLFGSIGEIESCKLV--RD-KITGNQFREYFTDSSLFEKWRPLDSE 109
Query: 118 TVE----------GMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE----EILDKNLYV 163
+ G Y A + + + L K + I D NLYV
Sbjct: 110 VIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYV 169
Query: 164 KNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
+ + + EL+Q FSQ G II+S ++ GIS+G GF+ F EA AI LNG
Sbjct: 170 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 229
Query: 223 L--FHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
+P+ V A ++T+ + Q P
Sbjct: 230 KPPGATEPITVKFANNPSQKTNQAILSQLYQSP 262
Score = 89 (36.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L Q+FS++G I +S+++V Q G S+G GF+++ + A AI+ L
Sbjct: 168 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 226
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 115 (45.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 37/121 (30%), Positives = 59/121 (48%)
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
K LYVKNI ++ +LK+ F + G ++ + + +G + FGFV ++ A +A+
Sbjct: 292 KALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRDFGFVHYAERSSALKAVKD 350
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFP-VHPTLYQRALQVYQAP 277
+ +PL V +A+ + ER + Y+ G A T P VHPT A Y A
Sbjct: 351 TERYEVNGQPLEVVLAKPQAER-KHDPSSYSY---GAAPTPAPFVHPTFGGFAAAPYGAM 406
Query: 278 G 278
G
Sbjct: 407 G 407
Score = 107 (42.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 32/120 (26%), Positives = 59/120 (49%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F L + L + + G+I +++ +D G SKGY FV + T++ A AIE+L+
Sbjct: 119 FIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELH 178
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ +G + R S + N L++ N+ + TE+ K ++++ V+ IEL
Sbjct: 179 SKEFKGKTI--------RCSLSETKNRLFIGNIPKNWTEDEFRK--VIEDVGPGVENIEL 228
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 121 (47.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 30/105 (28%), Positives = 56/105 (53%)
Query: 143 LYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFG 202
L VK D+++ E +++ L++ + DE +++ F GII + I+R G KG+G
Sbjct: 93 LQVKYSDNEI--EKMERKLFIGMLGTS-DEDQIRILFGNYGIIEDLNIVREKDGKPKGYG 149
Query: 203 FVCFSNPDEANRAINTLNG---ILFHQKPLYVAIAQTKRERTSYL 244
F+ +S DE+ A+ ++G + P+ V A T+R++ L
Sbjct: 150 FIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQKRKKL 194
Score = 115 (45.5 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA- 117
+ + T D ++ +F +G I+ +V +DGK KGYGF++YST++ + NA+ ++
Sbjct: 111 IGMLGTSDEDQIRILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKH 170
Query: 118 TVEGMEL 124
T+ G L
Sbjct: 171 TLPGSNL 177
Score = 113 (44.8 bits), Expect = 0.00097, P = 0.00097
Identities = 25/69 (36%), Positives = 43/69 (62%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F L T + +L Q+F+ +G++ SSKV + ++ + SK +GFV Y +SA+ AI++L
Sbjct: 290 FIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQELN 349
Query: 116 AATVEGMEL 124
+EG +L
Sbjct: 350 GRAIEGKKL 358
Score = 100 (40.3 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 32/113 (28%), Positives = 51/113 (45%)
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-II 185
P++ G +Q + +F+ + + +L++ + + ELKQ F+ G +I
Sbjct: 255 PNVNFGMMQGNQAFDYNQQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVI 314
Query: 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
SS + N SK FGFV + N A AI LNG K L V + K+
Sbjct: 315 SSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQELNGRAIEGKKLKVNFKREKQ 367
Score = 87 (35.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAI 111
F F ++ S+++ + QIF+KFG+I ++ + SKG F+ +ST+E A NA+
Sbjct: 18 FTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNAL 76
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 134 (52.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N +EA AI++L
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ +K +
Sbjct: 348 NGYRLGDKVLQVSFKSSKSHK 368
Score = 130 (50.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 35/110 (31%), Positives = 55/110 (50%)
Query: 135 QESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN 194
QE N Y + D+ ++ NL + + ++ + EL+ FS G + S K++R
Sbjct: 34 QEVYDMPNGYEDPMGDEPSDA--KTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDK 91
Query: 195 R---------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
G S G+GFV + NP +A RAINTLNG+ K + V+ A+
Sbjct: 92 MAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYAR 141
Score = 113 (44.8 bits), Expect = 0.00097, P = 0.00097
Identities = 39/162 (24%), Positives = 72/162 (44%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L + +L +FS G+++S+K++ + + + +S +N + A
Sbjct: 63 LPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDA---- 118
Query: 121 GMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFS 180
E +L R+Q S + Y + D + D NLY+ + + + ++ F+
Sbjct: 119 --ERAINTLNGLRLQ-SKTIKVSYARPSSDGIK----DANLYISGLPKTMTQKNVEDMFT 171
Query: 181 QCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
Q G II+S ++ G+S+G F+ F EA AI LNG
Sbjct: 172 QYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNG 213
Score = 78 (32.5 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 28/114 (24%), Positives = 53/114 (46%)
Query: 16 LGTPFSLYVGDLDSTDLLRLCSAL-IASIDVHSAMATPTF--IP----FTVNLASTIDNW 68
LG F YV D+ + + L + S + + A P+ I + L T+
Sbjct: 105 LGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLYISGLPKTMTQK 164
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEG 121
+ +F+++G I +S+++V Q G S+G F+++ + A AI+ L + G
Sbjct: 165 NVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSG 218
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 170 (64.9 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 53/182 (29%), Positives = 99/182 (54%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L +D LH FS G++ S KV+ ++ +S+GYGFV++ ++ +A ++ Y+ +
Sbjct: 114 DLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN-YSGS 172
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
V S + RI ASF+ + +++ D +++V +++ DV ++ L +
Sbjct: 173 V-----MPNSDQPFRINW-ASFSTGEKRAVENGP-----DLSVFVGDLSPDVTDVLLHET 221
Query: 179 FS-QCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS + + S K++ +N G SKG+GFV F + +E +RA+ +NG + + V IA
Sbjct: 222 FSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATP 281
Query: 237 KR 238
KR
Sbjct: 282 KR 283
Score = 162 (62.1 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 54/184 (29%), Positives = 89/184 (48%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFS-KFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALN 109
P F +L+ + + LH+ FS ++ ++S+KVV+ S G+SKGYGFV++ +
Sbjct: 200 PDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSR 259
Query: 110 AIEKLYAATVEGMEL---YAPSLRAGRIQESASFNNLYVKN---------LDDDVTEEIL 157
A+ ++ A ++ A RA Q+ S + + E
Sbjct: 260 ALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGEST 319
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+ ++V I+ DV + +L+Q FSQ G + SVKI + KG GFV F++ A AI
Sbjct: 320 NATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP-----VGKGCGFVQFADRKSAEDAIE 374
Query: 218 TLNG 221
+LNG
Sbjct: 375 SLNG 378
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 170 (64.9 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 78/306 (25%), Positives = 126/306 (41%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L T+ ++ +F FG+++S K++ + G+S GYGFV Y QE A AI L
Sbjct: 114 VNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINAL-- 171
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
G+ L +++ + S+ E I NLYV + ++ + +L+
Sbjct: 172 ---NGLRLQNKTIKVSIARPSS---------------ESIKGANLYVSGLPKNMTQSDLE 213
Query: 177 QYFSQCGIISSVKIMRTN------RGISKGFGFVCFSNPDEANRAINTLNGILFHQ--KP 228
FS G I + +I+ N G+SKG GF+ F EA+RAI LNG +P
Sbjct: 214 SLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEP 273
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPG--LASTNFPVHPTLYQRALQVYQAPGFRHGGMIP 286
+ V A + ++ + A P FP + A A H P
Sbjct: 274 ITVKFANNPSSNKNSMQPLAAYIAPQNTRGGRAFPANAAAGAAAAAAAAAI---H----P 326
Query: 287 NGFXXXXXXXLFLTRAGQAAANNLTNGNQRAAANNSMLAV-ASPDERKDILGQ--GLYPL 343
N + N + GN A++ + +PD +++L Q G +
Sbjct: 327 NAGRYSSVISRYSPLTSDLITNGMIQGNTIASSGWCIFVYNLAPDTEENVLWQLFGPFGA 386
Query: 344 VKKLKV 349
V+ +KV
Sbjct: 387 VQSVKV 392
Score = 124 (48.7 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGIS-KGFGFVCFSNPDEANRAINTL 219
++V N+ D +E L Q F G + SVK++R + KGFGFV +N +EA AI +L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K ++T
Sbjct: 423 NGYTLGNRVLQVSFKTNKNKQT 444
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + + + E++ F G + S K++R G S G+GFV + ++A +AIN
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 219 LNGILFHQKPLYVAIAQTKRE 239
LNG+ K + V+IA+ E
Sbjct: 171 LNGLRLQNKTIKVSIARPSSE 191
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 174 (66.3 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 53/189 (28%), Positives = 88/189 (46%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL+ ++ +L QIFSKFG + +++ + DGK KG+ FVQ+ A A + +
Sbjct: 130 NLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMNRKAI 189
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT--EEI-------LDKNLYVKNINDDV 170
+ + ESA + + ++ T E+ L L ++N++
Sbjct: 190 RDRPVEVDWTTSNT--ESADPEDTEEPHKAEETTSTEKFKGIRKIKLKSRLIIRNLSFKC 247
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+E +LKQ FS+ G + KI G +GF FV F EA +A+ +NG + +
Sbjct: 248 EEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMNGKKIKDRQVA 307
Query: 231 V--AIAQTK 237
V AIA+ K
Sbjct: 308 VDWAIAKDK 316
Score = 154 (59.3 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 54/195 (27%), Positives = 90/195 (46%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI 111
P F L T N L +IFS+ G +++ VV ++ K +G+G+V +S ++ A A+
Sbjct: 2 PAVTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRAL 61
Query: 112 E--KLYA-----ATVEGMELYAPSLRAG-RIQESASFNNLYVKNLDDDVTEEILD----- 158
+ KLY TV +L + + + + K+ + TEEI
Sbjct: 62 KEVKLYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNTEEIPSPTKKK 121
Query: 159 KN--LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
+N L ++N++ ++ ELKQ FS+ G + +I G KGF FV F EA +A
Sbjct: 122 ENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKAR 181
Query: 217 NTLNGILFHQKPLYV 231
+N +P+ V
Sbjct: 182 AAMNRKAIRDRPVEV 196
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 171 (65.3 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 46/182 (25%), Positives = 87/182 (47%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ + S AI+ L
Sbjct: 177 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQ-LT 235
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G+ + A A + +++ + LYV NI+ +DE +L
Sbjct: 236 GQKLLGIPIIAQLTEAEKNRQARN------SEASSGNKHSAPFHRLYVGNIHFSIDENDL 289
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F G + V++ + G S+G+GFV F +P++A A+ +NG + + V +
Sbjct: 290 QSVFEPFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGN 349
Query: 236 TK 237
K
Sbjct: 350 DK 351
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 169 (64.5 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 58/205 (28%), Positives = 99/205 (48%)
Query: 29 STDLLRLCSALIA--SIDVHSAMATPT---------FIPFTVNLASTIDNWKLHQIFSKF 77
STD L +A++ S +HSA P F F +L+ + N L F+KF
Sbjct: 190 STDS-HLANAIVLQESAVLHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKF 248
Query: 78 GDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQE 136
G++ +KV+ Q KSKGYGFV + +++A NAI + + G + A + E
Sbjct: 249 GEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWI-GKRAVRTNWAARKNSE 307
Query: 137 SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG 196
+ + L + + + + + ++YV NI+ + +L+ FS G I+ V+I +T R
Sbjct: 308 E-NRDKLTFEQVFNSTKAD--NTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQR- 363
Query: 197 ISKGFGFVCFSNPDEANRAINTLNG 221
+ FV + + A +AI +NG
Sbjct: 364 ----YAFVRYEKKECATKAIMEMNG 384
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 147 (56.8 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 43/144 (29%), Positives = 75/144 (52%)
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+E ME LR Q S+ N V + D+ + +++Y+ N++ +EL+Q+
Sbjct: 24 LEEMEQETAKLRELHSQLSSESTN-GVTHPTDEEKRDTDARSIYIGNVDYGSTPLELQQH 82
Query: 179 FSQCGIISSVKIMRTNR--GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS G+++ V I+ TN+ G KGF ++ F++ D N+A+ TL+G F ++ L V+
Sbjct: 83 FSSAGVVNRVTIL-TNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRERQLKVSA--- 138
Query: 237 KRERTSYLRIMYAKQGPGLASTNF 260
+RT+ I + PG NF
Sbjct: 139 --KRTNIPGISVKRGFPGRGRGNF 160
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 147 (56.8 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 43/144 (29%), Positives = 75/144 (52%)
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+E ME LR Q S+ N V + D+ + +++Y+ N++ +EL+Q+
Sbjct: 24 LEEMEQETAKLRELHSQLSSESTN-GVTHPTDEEKRDTDARSIYIGNVDYGSTPLELQQH 82
Query: 179 FSQCGIISSVKIMRTNR--GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS G+++ V I+ TN+ G KGF ++ F++ D N+A+ TL+G F ++ L V+
Sbjct: 83 FSSAGVVNRVTIL-TNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRERQLKVSA--- 138
Query: 237 KRERTSYLRIMYAKQGPGLASTNF 260
+RT+ I + PG NF
Sbjct: 139 --KRTNIPGISVKRGFPGRGRGNF 160
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 166 (63.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 54/201 (26%), Positives = 98/201 (48%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFS-KFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALN 109
P F +L+ + + LH+ FS K+ ++++KVV+ + G+SKGYGFV++ +
Sbjct: 195 PDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 254
Query: 110 AIEKLYAA--TVEGMEL--YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A+ ++ + M + P G Q+ N + + D I++ ++V
Sbjct: 255 AMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGD----IMNTTIFVGG 310
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ V + +LKQ F++ G I SVKI + KG GFV F N A A+ LNG +
Sbjct: 311 LDSSVTDEDLKQPFNEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLNGTVIG 365
Query: 226 QKPLYVAIAQT---KRERTSY 243
++ + ++ + K+ R Y
Sbjct: 366 KQTVRLSWGRNPANKQPRDKY 386
Score = 132 (51.5 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 44/168 (26%), Positives = 88/168 (52%)
Query: 79 DIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQES 137
+I S KV+ +++ G S+GYGFV++ + + A + + T+ + + R+
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTD------QPFRLNW- 180
Query: 138 ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQ-CGIISSVKI-MRTNR 195
ASF+ K L+++ D +++V +++ DV + L + FS+ + + K+ + N
Sbjct: 181 ASFST-GEKRLENNGP----DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANT 235
Query: 196 GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSY 243
G SKG+GFV F + +E +A+ +NG+ + + + A T R+ Y
Sbjct: 236 GRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA-TPRKTNGY 282
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 166 (63.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 53/202 (26%), Positives = 97/202 (48%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFS-KFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALN 109
P F +LA + + LH+ FS K+ ++++KVV+ + G+SKGYGFV++ +
Sbjct: 197 PDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 256
Query: 110 AIEKLYAATVEGMEL-YAPSL--RAGRIQESASF--NNLYVKNLDDDVTEEILDKNLYVK 164
A+ ++ + P+ + Q+ + + + ++ D + I +V
Sbjct: 257 AMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTI-----FVG 311
Query: 165 NINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF 224
++ V + +LKQ FS+ G I SVKI + KG GFV F N A A+ LNG +
Sbjct: 312 GLDSSVTDEDLKQPFSEFGEIVSVKIP-----VGKGCGFVQFVNRPNAEEALEKLNGTVI 366
Query: 225 HQKPLYVAIAQT---KRERTSY 243
++ + ++ + K+ R Y
Sbjct: 367 GKQTVRLSWGRNPANKQPRDKY 388
Score = 135 (52.6 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 52/214 (24%), Positives = 106/214 (49%)
Query: 60 NLASTIDNWKLHQIFSKFGD--IQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
+L + +D L+ F+ + I S KV+ ++ +G S+GYGFV++ + + A +++
Sbjct: 109 DLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNG 168
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A + + + R+ ASF+ K L+++ D +++V ++ DV + L
Sbjct: 169 APMPNTD------QPFRLNW-ASFST-GEKRLENNGP----DLSIFVGDLAPDVSDALLH 216
Query: 177 QYFSQ-CGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ FS+ + + K+ + N G SKG+GFV F + +E +A+ +NG+ + + + A
Sbjct: 217 ETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPA 276
Query: 235 QTKRERTSYLRIM-YAKQGPGLASTNFPVHPTLY 267
T R+ Y + Y G S ++ T++
Sbjct: 277 -TPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIF 309
>SGD|S000001919 [details] [associations]
symbol:PES4 "Poly(A) binding protein, suppressor of DNA
polymerase epsilon mutation" species:4932 "Saccharomyces
cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
Length = 611
Score = 111 (44.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 134 IQESASFNNLYVKNLDDDVTEEILDKN---LYVKNINDDVDEIELKQYFSQCGIISSVKI 190
I++ S N + K D + ++ I + +++KN+ ++ +FS+ G I S+ +
Sbjct: 276 IEKEQSLNEKHSKGNDKE-SKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKSIYL 334
Query: 191 MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
+ + + FV + N ++ +AI N F K L V AQ K ER ++
Sbjct: 335 SNATK-VKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKFI 387
Score = 103 (41.3 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 31/97 (31%), Positives = 50/97 (51%)
Query: 55 IP-FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIE 112
+P F +L T+ L IF K+ S+KV + S KS G+G++ + +E A A+E
Sbjct: 91 VPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAME 150
Query: 113 KLYAATVEGMEL-YAPSLRAGRIQESASFNNLYVKNL 148
+L V G E+ PSLR +++ N++ NL
Sbjct: 151 ELNYTKVNGKEIRIMPSLRNTTFRKNFG-TNVFFSNL 186
Score = 58 (25.5 bits), Expect = 8.7e-05, Sum P(2) = 8.7e-05
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 71 HQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+ FS++G I S K+ D + K GFV + +++A N I K+Y T
Sbjct: 199 YDTFSRYGKILSCKL----DSR-KDIGFVYFEDEKTARNVI-KMYNNT 240
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 164 (62.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 54/184 (29%), Positives = 94/184 (51%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L +D LH FS ++ S KV+ + Q +S+GYGFV++ ++ +A A++ T
Sbjct: 125 DLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVT 184
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+ E + R+ ASF+ + +E D +++V ++ DV + L +
Sbjct: 185 MPNAE------QPFRLNW-ASFSTG-----EKRASENGPDLSIFVGDLAPDVSDAVLLET 232
Query: 179 FSQCGIISSVK----IMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
F+ G SVK ++ +N G SKG+GFV F + +E +RA+ +NG + + V IA
Sbjct: 233 FA--GRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
Query: 235 QTKR 238
KR
Sbjct: 291 TPKR 294
Score = 154 (59.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 52/179 (29%), Positives = 87/179 (48%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFS-KFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALN 109
P F +LA + + L + F+ ++ ++ +KVV+ S G+SKGYGFV++ +
Sbjct: 211 PDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSR 270
Query: 110 AIEKLYAATVEGMEL---YAPSLRA---GRIQESASFNNLYVKNLDDDVTE-EILDKNLY 162
A+ ++ A ++ A RA G+ S + + +++ E + ++
Sbjct: 271 AMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIF 330
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
V ++ DV E +L Q FS G + SVKI + KG GFV F+N A AI LNG
Sbjct: 331 VGGLDADVTEEDLMQPFSDFGEVVSVKIP-----VGKGCGFVQFANRQSAEEAIGNLNG 384
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 111 (44.1 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINT 218
NL++ ++ + + ++ Q F G + S K+ + +SK FGFV + NP A AI
Sbjct: 313 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 372
Query: 219 LNGILFHQKPLYVAIAQTKRERTSY 243
+NG K L V + ++K + Y
Sbjct: 373 MNGFQIGMKRLKVQLKRSKNDSKPY 397
Score = 97 (39.2 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 73 IFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA-TVEG 121
+FS FG I+ +++ DG S+G FV +ST+ A NAI+ ++ + T+EG
Sbjct: 40 MFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEG 89
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 111 (44.1 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINT 218
NL++ ++ + + ++ Q F G + S K+ + +SK FGFV + NP A AI
Sbjct: 319 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 378
Query: 219 LNGILFHQKPLYVAIAQTKRERTSY 243
+NG K L V + ++K + Y
Sbjct: 379 MNGFQIGMKRLKVQLKRSKNDSKPY 403
Score = 97 (39.2 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 73 IFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA-TVEG 121
+FS FG I+ +++ DG S+G FV +ST+ A NAI+ ++ + T+EG
Sbjct: 40 MFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEG 89
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 132 (51.5 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 50/172 (29%), Positives = 84/172 (48%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA 117
VN L T+ ++ +FS G+++S K+V + K G + +ALN + +
Sbjct: 30 VNYLPQTMTQEEMRSLFSSIGELESCKLV-----RDKVSGNLVLPASLTALNPALQQGQS 84
Query: 118 TVEGMELYAPSLRAGRIQESAS-FNNLYVKNLDDDVT------EEILDKNLYVKNINDDV 170
G Y +RA +++ + N L ++N V+ E I NLYV + ++
Sbjct: 85 LGYGFVNY---VRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNL 141
Query: 171 DEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNG 221
+ +L+ F+ G I + +I+ N G+SKG GF+ F +EA RAI LNG
Sbjct: 142 SQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNG 193
Score = 120 (47.3 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 30/82 (36%), Positives = 43/82 (52%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ + +E L Q F G + SVK++R KGFGFV +N DEA AI +L
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 220 NGILFHQKPLYVAIAQTKRERT 241
NG + L V+ K + T
Sbjct: 335 NGYTLGNRVLQVSFKTNKTKTT 356
Score = 84 (34.6 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ L + L +F+ FG I +S+++ G SKG GF+++ + A AI++L
Sbjct: 133 YVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELN 192
Query: 116 AATVEG 121
T +G
Sbjct: 193 GKTPKG 198
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 121 (47.7 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLYAAT 118
NL+ +D+ L +FS+ G + ++V+ +D G+SKG+GFV Y + + NAI+ L A
Sbjct: 210 NLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269
Query: 119 VEGMEL 124
++G ++
Sbjct: 270 LDGRQI 275
Score = 116 (45.9 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 161 LYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
+YV N++ VD++ L+ FS+ G ++ + I + G SKGFGFV + + E AI +L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 220 NGILFHQKPLYVAIAQTKRERTSY 243
+G + + V+ A+ + R Y
Sbjct: 266 DGADLDGRQIRVSEAEARPPRRQY 289
Score = 85 (35.0 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL +D+ +L Q+F G+++ +V+ + G+S+G+GFV S+ A ++
Sbjct: 94 FVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFN 153
Query: 116 AATVEGMEL 124
++G L
Sbjct: 154 GYELDGRPL 162
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 140 (54.3 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 36/97 (37%), Positives = 57/97 (58%)
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCF 206
LDD + + +YV N+ V E +L QYFS+ G I SVKI+R R G SKG+ FV +
Sbjct: 33 LDDSSWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTY 92
Query: 207 SNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSY 243
P +A +A++ +G + L V IA+++ ++ +Y
Sbjct: 93 VTPKQAVKALDA-HGKDLQGRSLVVRIAKSREQQHAY 128
Score = 113 (44.8 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 65 IDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
++N LHQ FS+FG I+S K+V + + G+SKGY FV Y T + A+ A++ + ++G
Sbjct: 56 VEN-DLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA-HGKDLQGRS 113
Query: 124 LYAPSLRAGRIQESA 138
L + R Q+ A
Sbjct: 114 LVV-RIAKSREQQHA 127
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 140 (54.3 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 36/97 (37%), Positives = 57/97 (58%)
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCF 206
LDD + + +YV N+ V E +L QYFS+ G I SVKI+R R G SKG+ FV +
Sbjct: 33 LDDSSWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTY 92
Query: 207 SNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSY 243
P +A +A++ +G + L V IA+++ ++ +Y
Sbjct: 93 VTPKQAVKALDA-HGKDLQGRSLVVRIAKSREQQHAY 128
Score = 113 (44.8 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 65 IDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
++N LHQ FS+FG I+S K+V + + G+SKGY FV Y T + A+ A++ + ++G
Sbjct: 56 VEN-DLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALDA-HGKDLQGRS 113
Query: 124 LYAPSLRAGRIQESA 138
L + R Q+ A
Sbjct: 114 LVV-RIAKSREQQHA 127
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 117 (46.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 33/101 (32%), Positives = 50/101 (49%)
Query: 143 LYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFG 202
L +K +++ E LD+ L+V ++ E +++Q F G I I+R G SKG
Sbjct: 39 LQLKPAENESRSEHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASKGCA 98
Query: 203 FVCFSNPDEANRAINTLNG---ILFHQKPLYVAIAQTKRER 240
FV F + EA AI L+G + L V A T++ER
Sbjct: 99 FVKFGSQQEAQSAITNLHGSQTMPGASSSLVVKYADTEKER 139
Score = 111 (44.1 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 34/87 (39%), Positives = 45/87 (51%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCG-IISS-VKIMR-TNRGISKGFGFVCFSNPDEANRAI 216
NL++ ++ + + EL Q F G +ISS V I R TN+ SK FGFV F NP A AI
Sbjct: 338 NLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQ--SKCFGFVSFDNPASAQAAI 395
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSY 243
+NG K L V + + K Y
Sbjct: 396 QAMNGFQIGMKRLKVQLKRPKDASRPY 422
Score = 94 (38.1 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA-TVEG 121
+ QIF FG I+ ++ DG SKG FV++ +Q+ A +AI L+ + T+ G
Sbjct: 71 VRQIFHPFGTIEECTILRGPDGASKGCAFVKFGSQQEAQSAITNLHGSQTMPG 123
Score = 46 (21.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 31/110 (28%), Positives = 40/110 (36%)
Query: 226 QKPLYVAIAQTKRERTSYLRIM--YAKQGP-GLASTNFPVHPTLYQRALQVYQAPGFRHG 282
Q L A A +Y+ M A Q P GL T P P+L + P F G
Sbjct: 174 QAALMAAAATAPGSAAAYMNPMAALATQIPHGLNGTGQP--PSLPSPTM-----PNFNMG 226
Query: 283 GMIPNGFXXXXXXXLFLTRAGQAAANNL-TNGNQRAAANNSMLAVASPDE 331
PNG A AAA+ + TNG + A L + P +
Sbjct: 227 ANTPNGQPGGAAAAA----AAAAAADGVFTNGIPQTAFPGHPLHLTIPPQ 272
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 139 (54.0 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 31/58 (53%), Positives = 39/58 (67%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 46 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 102
Score = 115 (45.5 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+ FV F + A++AI +
Sbjct: 44 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 102
Query: 220 NGILFHQK 227
NG+L + +
Sbjct: 103 NGMLLNDR 110
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 114 (45.2 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIM---RTNRGISKGFGFVCFSNPDEANRAI 216
NL++ ++ + + EL Q F G + S K+ TN+ SK FGFV F NP A AI
Sbjct: 270 NLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQ--SKCFGFVSFDNPTSAQAAI 327
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSY 243
+NG K L V + + K Y
Sbjct: 328 QAMNGFQIGMKRLKVQLKRPKDANRPY 354
Score = 88 (36.0 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA-TVEG 121
+ ++F FG I+ ++ DG SKG FV+YS+ A AI L+ + T+ G
Sbjct: 19 VRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAAISSLHGSQTMPG 71
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 137 (53.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 36/111 (32%), Positives = 58/111 (52%)
Query: 141 NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT------- 193
+N Y ++DD ++I NL V + ++ + EL+ FS G + S K++R
Sbjct: 2 SNGYEDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEM 61
Query: 194 -----NRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
++G S G+GFV + N +A RAINTLNG+ K + V+ A+ E
Sbjct: 62 RSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE 112
Score = 131 (51.2 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 31/81 (38%), Positives = 45/81 (55%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ D DE L Q F G +++VK++R N KGFGFV +N +EA AI +L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG K L V+ +K +
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
Score = 68 (29.0 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAI 111
L T+ + +F FG I +S+V+V Q G S+G F+++ + A AI
Sbjct: 124 LPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAI 175
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 157 (60.3 bits), Expect = 7.9e-09, P = 7.9e-09
Identities = 48/185 (25%), Positives = 92/185 (49%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAAT 118
NL TI + +L QIF + G + ++V + +S+G+GFV + E A A++ ++
Sbjct: 122 NLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQ 181
Query: 119 VEG--MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ P + G E + K D++ + +Y N+ ++ LK
Sbjct: 182 IGGRTVKVNFPEVPRGGENEV-----MRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 177 QYFS-QCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F Q G++ + I N G S+GFGF+ F + + A+ T+NG+ + L + +A
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA- 295
Query: 236 TKRER 240
++RE+
Sbjct: 296 SEREK 300
>CGD|CAL0006311 [details] [associations]
symbol:orf19.2261 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0006311 GO:GO:0000166
EMBL:AACQ01000095 EMBL:AACQ01000096 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG282907 KO:K12831 RefSeq:XP_714789.1
RefSeq:XP_714851.1 ProteinModelPortal:Q59Z39 STRING:Q59Z39
GeneID:3643500 GeneID:3643580 KEGG:cal:CaO19.2261
KEGG:cal:CaO19.9801 Uniprot:Q59Z39
Length = 259
Score = 152 (58.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 48/180 (26%), Positives = 91/180 (50%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS-KGYGFVQYSTQESALNAIEKLYAAT 118
N+ + ++++F +FG ++S + + K+ +GYGFV++ A +E L
Sbjct: 23 NIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNSADAKYTMEIL---- 78
Query: 119 VEGMELYAPSLRAGRI--QESASFNNLYVKNLDDDVTEEILDKN-------LYVKNINDD 169
G+ LY +L+ RI + +S NN + + V ++++ N L++ N+N
Sbjct: 79 -RGIRLYGKALKLKRIDAKSQSSTNNPNNQTIGTFVQSDLINPNYIDVGAKLFINNLNPL 137
Query: 170 VDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG-ILFHQK 227
VDE L FS+ G +I + I R + G S G+GF+ + + + ++ I +N IL + K
Sbjct: 138 VDESFLMDTFSKFGTLIRNPIIRRDSEGHSLGYGFLTYDDFESSDLCIQKMNNTILMNNK 197
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 117 (46.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
+++ N+ + +E L Q F G + SVKI++ TN+ KG+GFV +N DEA AI
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQ--CKGYGFVSMTNYDEAAMAIR 461
Query: 218 TLNGILFHQKPLYVAIAQTK 237
LNG + L V+ K
Sbjct: 462 ALNGYTMGNRVLQVSFKTNK 481
Score = 86 (35.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV--VSQDGKSKGYGFVQYSTQESALNAIEKL 114
+ L T+ +L IF+ FG I +S+++ D ++KG GF+++ +E A AI L
Sbjct: 251 YVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIAL 310
Query: 115 YAAT 118
T
Sbjct: 311 NGTT 314
>UNIPROTKB|F1SAI1 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381
OMA:SAMESIN EMBL:CU442705 EMBL:FP102263 Ensembl:ENSSSCT00000004150
Uniprot:F1SAI1
Length = 371
Score = 111 (44.1 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 30/80 (37%), Positives = 41/80 (51%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCG--IISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
NL++ ++ + + EL Q F G I S + RTN+ SK FGFV F NP A AI
Sbjct: 288 NLFICHLPQEFGDAELMQMFLPFGNGISSKAFVDRTNQ--SKCFGFVSFDNPASAQTAIQ 345
Query: 218 TLNGILFHQKPLYVAIAQTK 237
+NG K L V + + K
Sbjct: 346 AMNGFQIGMKRLKVQLKRPK 365
Score = 89 (36.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA-TVEG 121
+ ++F FG+I+ ++ DG SKG FV+YS+ A AI L+ + T+ G
Sbjct: 35 VRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPG 87
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 158 (60.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 50/218 (22%), Positives = 104/218 (47%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129
L QIF G +Q+ K++ ++ K YGFV+Y +A A++ T+ G ++ +
Sbjct: 101 LRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQ-----TLNGRRVHQSEI 155
Query: 130 RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVK 189
R ++A+ +D + +++V +++++V++ L Q FS G +S +
Sbjct: 156 RVNWAYQAAT------SATKEDTSNHF---HIFVGDLSNEVNDEVLTQAFSVFGSVSEAR 206
Query: 190 IMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+M + G S+G+GFV F + +A +A+++++G + + A K + + +
Sbjct: 207 VMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPS--IAQQQ 264
Query: 249 AKQGPGLAST------NFPVHPTLYQRALQVYQAPGFR 280
A G+ T +FP H + + V Q P ++
Sbjct: 265 AMSAVGMTPTTPFGHHHFPTHG-MQSYEMVVNQTPAYQ 301
Score = 115 (45.5 bits), Expect = 0.00089, P = 0.00089
Identities = 30/92 (32%), Positives = 47/92 (51%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
LYV ++ V E L+Q F G + +VKI+ +GFV + +P A+RA+ TLN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 221 GILFHQKPLYV------AIAQTKRERTSYLRI 246
G HQ + V A + TK + +++ I
Sbjct: 147 GRRVHQSEIRVNWAYQAATSATKEDTSNHFHI 178
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 157 (60.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 48/182 (26%), Positives = 90/182 (49%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L +D LH FS+ G++ S K++ + Q G+S+ YGFV+++T +A ++ Y T
Sbjct: 90 DLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQS-YNGT 148
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+ P+ A F+ + E D +++V ++ DV + L+
Sbjct: 149 M------MPNTEQPFRLNWAGFST------GEKRAETGSDFSIFVGDLASDVTDTMLRDT 196
Query: 179 F-SQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F S+ + K++ N G SKG+GFV F + E +RA+ +NG+ + + + +A
Sbjct: 197 FASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATP 256
Query: 237 KR 238
K+
Sbjct: 257 KK 258
Score = 145 (56.1 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 52/184 (28%), Positives = 89/184 (48%)
Query: 54 FIPFTVNLASTIDNWKLHQIF-SKFGDIQSSKVVVSQD-GKSKGYGFVQY---STQESAL 108
F F +LAS + + L F S++ ++ +KVVV + G SKGYGFV++ S + A+
Sbjct: 177 FSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAM 236
Query: 109 NAIEKLYAATVEGMELYA-----PSLRAGRIQESASFNNLYVKN---LDDDVTE-EILDK 159
+ +Y ++ M + PS ++ + Y N ++ + +
Sbjct: 237 TEMNGVYCSS-RAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNT 295
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
++V ++ +V + EL+Q F+Q G + SVKI KG GFV FS+ A AI L
Sbjct: 296 TIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPA-----GKGCGFVQFSDRSSAQEAIQKL 350
Query: 220 NGIL 223
+G +
Sbjct: 351 SGAI 354
Score = 47 (21.6 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 17 GTPFSLYVGDL--DSTD-LLR 34
G+ FS++VGDL D TD +LR
Sbjct: 174 GSDFSIFVGDLASDVTDTMLR 194
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 160 (61.4 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 48/160 (30%), Positives = 75/160 (46%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL+ L ++F K I K+ + G+ KGY FV++ T E A A+ +
Sbjct: 465 NLSYAASEETLQELFKKATSI---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEI 521
Query: 120 EG----MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
EG +E +PS + G + FN K L+V+ +++D E L
Sbjct: 522 EGRAIRLEFSSPSWQKGNMNARGGFNQQ--------------SKTLFVRGLSEDTTEETL 567
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRA 215
++ F G IS+ + + G SKGFGFV FS+P++A A
Sbjct: 568 RESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 605
Score = 122 (48.0 bits), Expect = 0.00025, P = 0.00025
Identities = 35/137 (25%), Positives = 65/137 (47%)
Query: 84 KVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNL 143
++V++++G SKG ++++ T+ A A+E+ V+G + QES
Sbjct: 396 RLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGG- 454
Query: 144 YVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGF 203
E K L V N++ E L++ F + +S+K+ + N+G KG+ F
Sbjct: 455 -----------ERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRPKGYAF 500
Query: 204 VCFSNPDEANRAINTLN 220
V F ++A A+N+ N
Sbjct: 501 VEFPTAEDAKEALNSCN 517
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 160 (61.4 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 48/160 (30%), Positives = 75/160 (46%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL+ L ++F K I K+ + G+ KGY FV++ T E A A+ +
Sbjct: 467 NLSYAASEETLQELFKKATSI---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEI 523
Query: 120 EG----MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
EG +E +PS + G + FN K L+V+ +++D E L
Sbjct: 524 EGRAIRLEFSSPSWQKGNMNARGGFNQQ--------------SKTLFVRGLSEDTTEETL 569
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRA 215
++ F G IS+ + + G SKGFGFV FS+P++A A
Sbjct: 570 RESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607
Score = 122 (48.0 bits), Expect = 0.00025, P = 0.00025
Identities = 35/137 (25%), Positives = 65/137 (47%)
Query: 84 KVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNL 143
++V++++G SKG ++++ T+ A A+E+ V+G + QES
Sbjct: 398 RLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGG- 456
Query: 144 YVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGF 203
E K L V N++ E L++ F + +S+K+ + N+G KG+ F
Sbjct: 457 -----------ERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRPKGYAF 502
Query: 204 VCFSNPDEANRAINTLN 220
V F ++A A+N+ N
Sbjct: 503 VEFPTAEDAKEALNSCN 519
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 160 (61.4 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 48/160 (30%), Positives = 75/160 (46%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL+ L ++F K I K+ + G+ KGY FV++ T E A A+ +
Sbjct: 467 NLSYAASEETLQELFKKATSI---KMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEI 523
Query: 120 EG----MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
EG +E +PS + G + FN K L+V+ +++D E L
Sbjct: 524 EGRAIRLEFSSPSWQKGNMNARGGFNQQ--------------SKTLFVRGLSEDTTEETL 569
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRA 215
++ F G IS+ + + G SKGFGFV FS+P++A A
Sbjct: 570 RESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607
Score = 122 (48.0 bits), Expect = 0.00025, P = 0.00025
Identities = 35/137 (25%), Positives = 65/137 (47%)
Query: 84 KVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNL 143
++V++++G SKG ++++ T+ A A+E+ V+G + QES
Sbjct: 398 RLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGG- 456
Query: 144 YVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGF 203
E K L V N++ E L++ F + +S+K+ + N+G KG+ F
Sbjct: 457 -----------ERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRPKGYAF 502
Query: 204 VCFSNPDEANRAINTLN 220
V F ++A A+N+ N
Sbjct: 503 VEFPTAEDAKEALNSCN 519
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 113 (44.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIM---RTNRGISKGFGFVCFSNPDEANRAI 216
NL++ ++ + + EL Q F G + S K+ TN+ SK FGFV F NP A AI
Sbjct: 343 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ--SKCFGFVSFDNPTSAQTAI 400
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSY 243
+NG K L V + + K Y
Sbjct: 401 QAMNGFQIGMKRLKVQLKRPKDANRPY 427
Score = 88 (36.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA 117
+ ++F FG I+ V+ S DG SKG FV++ +Q A AI+ L+ +
Sbjct: 111 VRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGS 158
Score = 75 (31.5 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 28/102 (27%), Positives = 45/102 (44%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F + +D L +F +FG I V+ + G KG F+ Y ++SAL A L+
Sbjct: 10 FVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALH 69
Query: 116 AA-TVEGMEL---YAPSLRAGRIQESASFNNLYVKNL-DDDV 152
T+ GM P+ GR ++ F + K ++DV
Sbjct: 70 EQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDV 111
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 159 (61.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 55/170 (32%), Positives = 80/170 (47%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD--GK--SKGYGFVQYSTQESALNAIE 112
F NL T L + FSK G ++S + +D G S G+GFV+Y ESA A+
Sbjct: 396 FIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALR 455
Query: 113 KLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
+L V+G +L S RA R +S VK T +IL V+NI
Sbjct: 456 RLQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVKK---QKTSKIL-----VRNIPFQAT 507
Query: 172 EIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAINTL 219
E+++ FS G + +V++ + G +GFGFV F +A +A N L
Sbjct: 508 VREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAFNAL 557
Score = 118 (46.6 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 149 DDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN--RG--ISKGFGFV 204
++D E I L++KN+N E LK+ FS+ G + S I + G +S GFGFV
Sbjct: 383 EEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFV 442
Query: 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ P+ A +A+ L G + L V I++
Sbjct: 443 EYKKPESAQKALRRLQGCIVDGHKLEVKISE 473
Score = 82 (33.9 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL T L +IFSK+G + + + K KG+ F+ Y E A+ A ++
Sbjct: 81 FVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYAEMD 140
Query: 116 AATVEG--MELYAPSLRAGRIQE-SASFNNLYVK 146
+G M L +++ +I++ A ++ Y K
Sbjct: 141 GQVFQGRMMHLLPSTIKKLKIEDIDAEESSSYKK 174
Score = 47 (21.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 23/84 (27%), Positives = 35/84 (41%)
Query: 77 FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQE 136
F D++S V + K Y QY NA ++ A + + R +E
Sbjct: 14 FVDLKSEAEVQKALKRKKEYIGGQYVEVSRCENAPKETVTAKTDDQP-WQRMKRDDEEEE 72
Query: 137 SASFNN-LYVKNLDDDVTEEILDK 159
S + L+V+NL TEE L+K
Sbjct: 73 DLSESGRLFVRNLPFTSTEEDLEK 96
Score = 47 (21.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/106 (22%), Positives = 44/106 (41%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +T +L +F K G + +V++ G + V++ A A KL +
Sbjct: 269 NLPATTSTAELEAVFGKHGSL--GRVLLPTGGIT---AIVEFLEPIEAKQAFTKLAYSKF 323
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL-DKNLYVK 164
+ LY G + S + V+ L+ + E ++ D + VK
Sbjct: 324 HSVPLYLEWAPMG-VFSSPALQKKNVEALEKEGEERLVPDGDTTVK 368
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 157 (60.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 48/175 (27%), Positives = 84/175 (48%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL+ + ++L + + G++ + +++ +G SKG ++YST E A AI+ L
Sbjct: 83 NLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKF 142
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVK-NLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
G +Y +R R +++A F + V + + + D+ L+V N+ +V +LK
Sbjct: 143 MGRLVY---IREDR-EQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLKDL 198
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
F Q G + I G S+G G V S+ EA AI L+ F + L V +
Sbjct: 199 FRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL 253
Score = 98 (39.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+YV N+ + L F+ G + +I G SKGFG V F N ++A +I LN
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 371
Query: 221 GILFHQKPLYVAIA 234
G + +PL ++ A
Sbjct: 372 GYRYGGRPLQLSYA 385
Score = 87 (35.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 57 FTVNLASTIDNWK-LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY 115
F NL + W+ L +F + G + + + ++Q+G+S+G G V S+ + A++AI+ L+
Sbjct: 182 FVGNLPYNV-RWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLH 240
Query: 116 AATVEGMEL 124
G L
Sbjct: 241 NTDFMGRTL 249
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 148 (57.2 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 49/169 (28%), Positives = 79/169 (46%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD--GK--SKGYGFVQYSTQESALNAIE 112
F NL + L +FSK G ++S + ++ G+ S G+GFV+Y E A A++
Sbjct: 733 FIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKALK 792
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+L V+ +L RI E A+ L V + + V+NI D+
Sbjct: 793 QLQGHVVDSHKLEV------RISERATKPAL-TSTRKKQVPRKQTTSKILVRNIPFQADK 845
Query: 173 IELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAINTL 219
E+++ FS G + +V++ + T G +GFGFV F +A RA L
Sbjct: 846 REIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQAL 894
Score = 121 (47.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 149 DDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRG---ISKGFGFV 204
+++ E + L++KN+N E LK FS+ G++ S I + N+ +S GFGFV
Sbjct: 720 EEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFV 779
Query: 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQ--TKRERTS 242
+ P++A +A+ L G + L V I++ TK TS
Sbjct: 780 EYRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTS 819
Score = 88 (36.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI 111
NL + + + Q+F+ FG + + ++DGK + +GF+ + ++E AL+A+
Sbjct: 8 NLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSAL 59
>TAIR|locus:2160437 [details] [associations]
symbol:AT5G41690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AK221749
IPI:IPI00517520 RefSeq:NP_568594.3 UniGene:At.55306
ProteinModelPortal:Q56XC6 SMR:Q56XC6 EnsemblPlants:AT5G41690.1
GeneID:834172 KEGG:ath:AT5G41690 TAIR:At5g41690
HOGENOM:HOG000131709 InParanoid:Q56XC6 OMA:WHERESL PhylomeDB:Q56XC6
ProtClustDB:CLSN2679886 Genevestigator:Q56XC6 Uniprot:Q56XC6
Length = 567
Score = 158 (60.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 52/245 (21%), Positives = 113/245 (46%)
Query: 6 RALNNNDSAILGTPFSLYVGDL--DSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLAS 63
+ +N FSL DL +D L S A++ + +P+ + +
Sbjct: 26 KKINKKKVTTKAIAFSLQQNDLLVTKSDQANLISVKEAAVREKTLFVAN--LPYETKIPN 83
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
ID F K G++ +++V+ GK G GFV++++ A A++K ++ +
Sbjct: 84 IID------FFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGECLDNNK 137
Query: 124 LY--APSLRAGRIQESASFNN-LYVKN---LDDDVTEE------ILDKNLYVKNINDDVD 171
++ + +A + ++ ++ K+ L+ EE +++ L+V N++
Sbjct: 138 IFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVEEVLFVANLSPQTK 197
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
++ +F+ G + S+++M + G G+GFV F++ DE +A+ NG H +++
Sbjct: 198 ISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNGEYLHDHKIFI 257
Query: 232 AIAQT 236
+A+T
Sbjct: 258 DVAKT 262
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 110 (43.8 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 30/87 (34%), Positives = 43/87 (49%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIM---RTNRGISKGFGFVCFSNPDEANRAI 216
NL++ ++ + + EL Q F G + S K+ TN+ SK FGFV F NP A AI
Sbjct: 436 NLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQ--SKCFGFVSFDNPGSAQAAI 493
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSY 243
++NG K L V + + K Y
Sbjct: 494 QSMNGFQIGMKRLKVQLKRPKDANRPY 520
Score = 107 (42.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 34/102 (33%), Positives = 49/102 (48%)
Query: 143 LYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFG 202
+ VK D + E D+ L+V +N E ++++ F G I I+R G SKG
Sbjct: 121 IQVKPADSESRGE--DRKLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPDGNSKGCA 178
Query: 203 FVCFSNPDEANRAINTLNG---ILFHQKPLYVAIAQTKRERT 241
FV +S EA AI+ L+G + L V A T +ERT
Sbjct: 179 FVKYSTHAEAQAAISALHGSQTMPGASSSLVVKFADTDKERT 220
Score = 93 (37.8 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA-TVEG 121
+ ++F FG I+ ++ DG SKG FV+YST A AI L+ + T+ G
Sbjct: 151 VRRLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPG 203
Score = 76 (31.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 22/68 (32%), Positives = 32/68 (47%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F + +D L +F +FG I V+ + G KG F+ Y +ESAL A L+
Sbjct: 50 FIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTALH 109
Query: 116 AA-TVEGM 122
T+ GM
Sbjct: 110 EQKTLPGM 117
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 113 (44.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIM---RTNRGISKGFGFVCFSNPDEANRAI 216
NL++ ++ + + EL Q F G + S K+ TN+ SK FGFV F NP A AI
Sbjct: 376 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ--SKCFGFVSFDNPTSAQTAI 433
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSY 243
+NG K L V + + K Y
Sbjct: 434 QAMNGFQIGMKRLKVQLKRPKDANRPY 460
Score = 104 (41.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 32/98 (32%), Positives = 46/98 (46%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
D+ L+V + E ++++ F G I ++R+ G SKG FV F + EA AI
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQ 192
Query: 218 TLNG---ILFHQKPLYVAIAQTKRERTSYLRIMYAKQG 252
L+G + L V +A T RER LR M G
Sbjct: 193 GLHGSRTMTGASSSLVVKLADTDRERA--LRRMQQMAG 228
Score = 88 (36.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA-TVEG 121
+ ++F FG I+ V+ S DG SKG FV++ +Q A AI+ L+ + T+ G
Sbjct: 150 VRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTG 202
Score = 75 (31.5 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 28/102 (27%), Positives = 45/102 (44%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F + +D L +F +FG I V+ + G KG F+ Y ++SAL A L+
Sbjct: 49 FVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALH 108
Query: 116 AA-TVEGMEL---YAPSLRAGRIQESASFNNLYVKNL-DDDV 152
T+ GM P+ GR ++ F + K ++DV
Sbjct: 109 EQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDV 150
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 113 (44.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIM---RTNRGISKGFGFVCFSNPDEANRAI 216
NL++ ++ + + EL Q F G + S K+ TN+ SK FGFV F NP A AI
Sbjct: 376 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ--SKCFGFVSFDNPTSAQTAI 433
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSY 243
+NG K L V + + K Y
Sbjct: 434 QAMNGFQIGMKRLKVQLKRPKDANRPY 460
Score = 104 (41.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 32/98 (32%), Positives = 46/98 (46%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
D+ L+V + E ++++ F G I ++R+ G SKG FV F + EA AI
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQ 192
Query: 218 TLNG---ILFHQKPLYVAIAQTKRERTSYLRIMYAKQG 252
L+G + L V +A T RER LR M G
Sbjct: 193 GLHGSRTMTGASSSLVVKLADTDRERA--LRRMQQMAG 228
Score = 88 (36.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA-TVEG 121
+ ++F FG I+ V+ S DG SKG FV++ +Q A AI+ L+ + T+ G
Sbjct: 150 VRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTG 202
Score = 75 (31.5 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 28/102 (27%), Positives = 45/102 (44%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F + +D L +F +FG I V+ + G KG F+ Y ++SAL A L+
Sbjct: 49 FVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSALH 108
Query: 116 AA-TVEGMEL---YAPSLRAGRIQESASFNNLYVKNL-DDDV 152
T+ GM P+ GR ++ F + K ++DV
Sbjct: 109 EQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDV 150
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 160 (61.4 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 57/187 (30%), Positives = 89/187 (47%)
Query: 59 VNLASTIDNWKLHQIFSKF-GDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
+NL D +++ FS+ G ++ + + Q GKSKG +V++ TQE+ + A+ A
Sbjct: 492 LNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKAL----A 547
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDD-VTEEILDKNLYVKNIN---DDVDE 172
A GM L R +IQ S + N K + + LY+ + ++ E
Sbjct: 548 AN--GMML---KNRPIKIQSSQAEKNRAAKAAKHQPIDPNDIPLKLYIGGLLGPLSNITE 602
Query: 173 IELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
ELKQ F+ G I V+I R G SKGFGF+ F EA A+ +NG+ + + V
Sbjct: 603 QELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKV 662
Query: 232 AIAQTKR 238
AQ +
Sbjct: 663 GYAQDSK 669
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 40/113 (35%), Positives = 58/113 (51%)
Query: 63 STIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEKLYAATV 119
S I +L Q+F+ FGDI V + +D GKSKG+GF+Q+ A AIE L +
Sbjct: 598 SNITEQELKQLFNPFGDILD--VEIHRDPYTGKSKGFGFIQF---HKASEAIEAL--TVM 650
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
GME+ ++ G Q+S Y+ D+ E IL + KNIN + +E
Sbjct: 651 NGMEVAGREIKVGYAQDSK-----YLLACDN-TQENILKQQQMAKNINTEEEE 697
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 160 (61.4 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 57/187 (30%), Positives = 89/187 (47%)
Query: 59 VNLASTIDNWKLHQIFSKF-GDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
+NL D +++ FS+ G ++ + + Q GKSKG +V++ TQE+ + A+ A
Sbjct: 492 LNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKAL----A 547
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDD-VTEEILDKNLYVKNIN---DDVDE 172
A GM L R +IQ S + N K + + LY+ + ++ E
Sbjct: 548 AN--GMML---KNRPIKIQSSQAEKNRAAKAAKHQPIDPNDIPLKLYIGGLLGPLSNITE 602
Query: 173 IELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
ELKQ F+ G I V+I R G SKGFGF+ F EA A+ +NG+ + + V
Sbjct: 603 QELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKV 662
Query: 232 AIAQTKR 238
AQ +
Sbjct: 663 GYAQDSK 669
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 40/113 (35%), Positives = 58/113 (51%)
Query: 63 STIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEKLYAATV 119
S I +L Q+F+ FGDI V + +D GKSKG+GF+Q+ A AIE L +
Sbjct: 598 SNITEQELKQLFNPFGDILD--VEIHRDPYTGKSKGFGFIQF---HKASEAIEAL--TVM 650
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
GME+ ++ G Q+S Y+ D+ E IL + KNIN + +E
Sbjct: 651 NGMEVAGREIKVGYAQDSK-----YLLACDN-TQENILKQQQMAKNINTEEEE 697
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 155 (59.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 44/175 (25%), Positives = 85/175 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F L+ +ID+ L + F G + ++V+ + +S+GYG+V + + A AI+++
Sbjct: 171 FVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM- 229
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+G E+ + + NN K D +E L++ N++ + D +
Sbjct: 230 ----QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEP--SDTLFLGNLSFNADRDAI 283
Query: 176 KQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+ F++ G + SV+I KGFG+V FSN ++A +A++ L G +P+
Sbjct: 284 FELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPV 338
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 134 (52.2 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 154 EEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEAN 213
+E D+ ++V N+ V E L + F Q G ++ V I + G K FGFVCF +P+ +
Sbjct: 5 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGNPKSFGFVCFKHPESVS 64
Query: 214 RAINTLNGILFHQKPLYV 231
AI LNGI + +P+ V
Sbjct: 65 YAIALLNGIRLYGRPINV 82
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 134 (52.2 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 43/136 (31%), Positives = 69/136 (50%)
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
A+ A L A+ V AP L +AS + D+DV + LYV N+
Sbjct: 25 AVPASSILIASLVFVSAFLAPLLTGSPSTNTASSTSSNTIASDEDV------RTLYVGNL 78
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFH 225
+E +++ FS+ G + SV++M+ G +GFGFV ++ D+ ++AI+ LN F
Sbjct: 79 PYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAISALNDTEFQ 137
Query: 226 QKPLYVAIAQTKRERT 241
Q+ L V A+ + ERT
Sbjct: 138 QRTLKVREAKERPERT 153
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 134 (52.2 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 43/136 (31%), Positives = 69/136 (50%)
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
A+ A L A+ V AP L +AS + D+DV + LYV N+
Sbjct: 25 AVPASSILIASLVFVSAFLAPLLTGSPSTNTASSTSSNTIASDEDV------RTLYVGNL 78
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFH 225
+E +++ FS+ G + SV++M+ G +GFGFV ++ D+ ++AI+ LN F
Sbjct: 79 PYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAISALNDTEFQ 137
Query: 226 QKPLYVAIAQTKRERT 241
Q+ L V A+ + ERT
Sbjct: 138 QRTLKVREAKERPERT 153
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 160 (61.4 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 50/169 (29%), Positives = 81/169 (47%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK----SKGYGFVQYSTQESALNAIE 112
F NL + L +FSK G I+S + ++ S G+GFV+Y E A A++
Sbjct: 725 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 784
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+L TV+G +L RI E A+ L V ++ + V+NI ++
Sbjct: 785 QLQGHTVDGHKLEV------RISERATKPAL-TSTRKKQVPKKQTTSKILVRNIPFQANQ 837
Query: 173 IELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAINTL 219
E+++ FS G + +V++ + T G +GFGFV F +A +A N L
Sbjct: 838 REIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 886
Score = 120 (47.3 bits), Expect = 0.00062, P = 0.00062
Identities = 49/197 (24%), Positives = 93/197 (47%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQ--SSKVVVSQDGKSKGYGFVQYSTQESALN 109
PT P+TV L N + ++ + ++V + G GY FV S++E
Sbjct: 289 PT-TPYTVKLRGAPFNVTEKNVIEFLAPLKPVAIRIVRNAHGNKTGYVFVDLSSEEEVKK 347
Query: 110 AIE--KLYAAT--VEGM-ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN-LYV 163
A++ + Y +E E AP+ R G + + + + +++ E++ D L+V
Sbjct: 348 ALKCNRDYMGGRYIEVFREKQAPTAR-GPPKSTTPWQGRTLGENEEE--EDLADSGRLFV 404
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
+N++ E +L++ FS G +S + + + KGF FV F P+ A +A ++G
Sbjct: 405 RNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 464
Query: 223 LFHQKPLYVAIAQTKRE 239
+F + L+V + K+E
Sbjct: 465 VFQGRMLHVLPSTIKKE 481
Score = 117 (46.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 149 DDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRG---ISKGFGFV 204
+++ E I L++KN+N E LK FS+ G I S I + N+ +S GFGFV
Sbjct: 712 EEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFV 771
Query: 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQ--TKRERTS 242
+ P++A +A+ L G L V I++ TK TS
Sbjct: 772 EYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTS 811
Score = 83 (34.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 14/61 (22%), Positives = 34/61 (55%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL + + + Q+F+ FG + + ++DGK + +GF+ + ++E A A+ + + +
Sbjct: 8 NLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHFHRSFI 67
Query: 120 E 120
+
Sbjct: 68 D 68
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 154 (59.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 48/176 (27%), Positives = 86/176 (48%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSK-FGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALN 109
P F +LA + ++ L F +G ++ +KVV+ + G+SKGYGFV+++ + +
Sbjct: 152 PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMR 211
Query: 110 AIEKL---YAATVEGMELYAPSLRAGRI-QESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A+ ++ Y +T M + P+ + + A + N N D+ + ++V
Sbjct: 212 AMTEMNGQYCST-RPMRI-GPAANKNALPMQPAMYQNTQGANAGDNDPN---NTTIFVGG 266
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
++ +V + ELK F Q G + VKI R GFV ++N A A++ LNG
Sbjct: 267 LDANVTDDELKSIFGQFGELLHVKIPPGKR-----CGFVQYANKASAEHALSVLNG 317
Score = 141 (54.7 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 50/212 (23%), Positives = 94/212 (44%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L +D + +F++ G+ S+KV+ ++ G+S+GYGF+++ + A ++ A
Sbjct: 66 DLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAP 125
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+ E + R Q A + D + +V ++ +V + L
Sbjct: 126 MPSTE---QTFRLNWAQAGAGEKRFQTEGPDHTI---------FVGDLAPEVTDYMLSDT 173
Query: 179 FSQC-GIISSVKIM--RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F G + K++ RT G SKG+GFV F++ +E RA+ +NG +P+ + A
Sbjct: 174 FKNVYGSVKGAKVVLDRTT-GRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA 232
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPVHPTLY 267
K + QG A N P + T++
Sbjct: 233 NKNALPMQPAMYQNTQGAN-AGDNDPNNTTIF 263
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 158 (60.7 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 47/171 (27%), Positives = 84/171 (49%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS-KGYGFVQYSTQESALNAIEKLY 115
F L + + +L ++FS+ G ++ VV + K+ +G+G+V +S E A++++
Sbjct: 7 FVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI- 65
Query: 116 AATVEGMELYAP----SLRAGRIQESASFNNLYVKNLDDDVTEEILDKN--LYVKNINDD 169
T EG ++ LR ++ + N+ K ++ DK L ++N++
Sbjct: 66 -TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFK 124
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
E +LK F+Q G + V I R G +GFGFV F N EA +A+ +N
Sbjct: 125 CSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMN 175
Score = 87 (35.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 38/144 (26%), Positives = 65/144 (45%)
Query: 120 EGMELYAPSLRAGRIQE--SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQ 177
+G EL A S + QE + +N + L DV E K ++++N++ D +E EL +
Sbjct: 298 DGEEL-AQSDTSTEEQEDKAVQVSNKKKRKLPSDVNE---GKTVFIRNLSFDSEEEELGE 353
Query: 178 YFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAI------NTLNGILFHQKPLY 230
Q G + V+I + + SKG F F + A + + N G+ + L
Sbjct: 354 LLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAASPENEAGGLKLDGRQLK 413
Query: 231 VAIAQTKRERTSYLRIMYAKQGPG 254
V +A T R+ + L+ K+ G
Sbjct: 414 VDLAVT-RDEAAKLQTTKVKKPTG 436
Score = 79 (32.9 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL+ L +F++FG + + DGK +G+GFVQ+ A A++ + +
Sbjct: 120 NLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEI 179
Query: 120 EG 121
+G
Sbjct: 180 KG 181
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 159 (61.0 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 55/170 (32%), Positives = 80/170 (47%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD--GK--SKGYGFVQYSTQESALNAIE 112
F NL T L + FSK G ++S + +D G S G+GFV+Y ESA A+
Sbjct: 720 FIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKALR 779
Query: 113 KLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
+L V+G +L S RA R +S VK T +IL V+NI
Sbjct: 780 RLQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVKK---QKTSKIL-----VRNIPFQAT 831
Query: 172 EIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAINTL 219
E+++ FS G + +V++ + G +GFGFV F +A +A N L
Sbjct: 832 VREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKAFNAL 881
Score = 118 (46.6 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 149 DDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN--RG--ISKGFGFV 204
++D E I L++KN+N E LK+ FS+ G + S I + G +S GFGFV
Sbjct: 707 EEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFV 766
Query: 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ P+ A +A+ L G + L V I++
Sbjct: 767 EYKKPESAQKALRRLQGCIVDGHKLEVKISE 797
Score = 72 (30.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI 111
NL + + + ++F+ FG + + ++DGK + +GF+ Y +++ A A+
Sbjct: 8 NLPNGMKEDRFRKLFAAFGTLTDCCLKFTKDGKFRKFGFIGYKSEDEAQAAL 59
Score = 47 (21.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 24/106 (22%), Positives = 44/106 (41%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +T +L +F K G + +V++ G + V++ A A KL +
Sbjct: 593 NLPATTSTAELEAVFGKHGSL--GRVLLPTGGIT---AIVEFLEPIEAKQAFTKLAYSKF 647
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL-DKNLYVK 164
+ LY G + S + V+ L+ + E ++ D + VK
Sbjct: 648 HSVPLYLEWAPMG-VFSSPALQKKNVEALEKEGEERLVPDGDTTVK 692
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 154 (59.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 49/188 (26%), Positives = 92/188 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L + FS G ++ +++ ++ + SKG +V++ S AI L
Sbjct: 156 FCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LT 214
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G+ + + +A + + +A NNL + LYV +++ ++ E L
Sbjct: 215 GQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP--------MRLYVGSLHFNITEDML 266
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ F G I S+++M + G SKG+GF+ FS+ + A +A+ LNG +P+ V
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
Query: 235 QTKRERTS 242
+ + +S
Sbjct: 327 TERTDASS 334
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 158 (60.7 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 50/169 (29%), Positives = 80/169 (47%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK----SKGYGFVQYSTQESALNAIE 112
F NL KL ++FSK G ++S + ++ S G+GFV+Y E A A++
Sbjct: 733 FIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALK 792
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+L V+G +L RI E A+ + + ++ K L V+NI
Sbjct: 793 QLQGHVVDGHKLEV------RISERATKPAVTLARKKQVPRKQTTSKIL-VRNIPFQAHS 845
Query: 173 IELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAINTL 219
E+++ FS G + +V++ + T G +GFGFV F +A RA N L
Sbjct: 846 REIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 127 (49.8 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 34/115 (29%), Positives = 60/115 (52%)
Query: 149 DDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRG---ISKGFGFV 204
+++ E + L++KN+N D E +LK+ FS+ G + S I + N+ +S GFGFV
Sbjct: 720 EEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFV 779
Query: 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTN 259
+ P++A +A+ L G + L V I++ R + + KQ P +T+
Sbjct: 780 EYRKPEQAQKALKQLQGHVVDGHKLEVRISE--RATKPAVTLARKKQVPRKQTTS 832
Score = 79 (32.9 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNA 110
NL + + + Q+F+ FG + + ++DGK + +GF+ + ++E A A
Sbjct: 8 NLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKA 58
Score = 79 (32.9 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
F NL T L ++FSK+G + + S K KG+ F+ + E A+ A ++
Sbjct: 405 FVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVD 464
Query: 116 AATVEGMELYA-PSLRAGRIQESAS 139
+G L+ PS E AS
Sbjct: 465 GQVFQGRMLHVLPSTIKKEASEDAS 489
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 137 (53.3 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 139 SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGI 197
+ NN +D TE+ NL V + ++ + ELK F G I S K++R G
Sbjct: 20 TINNNCSSPVDSGNTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
S G+GFV + +P +A +AINTLNG+ K + V+ A+
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 116
Score = 117 (46.2 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 30/67 (44%), Positives = 39/67 (58%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
I D NLYV + + + EL+Q FSQ G II+S ++ GIS+G GF+ F EA
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181
Query: 215 AINTLNG 221
AI LNG
Sbjct: 182 AIKGLNG 188
Score = 108 (43.1 bits), Expect = 0.00067, P = 0.00067
Identities = 34/106 (32%), Positives = 54/106 (50%)
Query: 59 VN-LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYA 116
VN L + +L +F G+I+S K+V + G+S GYGFV Y + A AI
Sbjct: 43 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN---- 98
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFN--NLYVKNLDDDVTEEILDK 159
T+ G+ L +++ + SAS NLYV L +T++ L++
Sbjct: 99 -TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 143
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 125 (49.1 bits), Expect = 0.00019, P = 0.00019
Identities = 40/126 (31%), Positives = 69/126 (54%)
Query: 56 PFTVNLASTID----NW-----KLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQE 105
P +N AS I NW ++ IFS+FG + S ++ + D GK KG+GFV + ++
Sbjct: 762 PVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKK 821
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
SA +AI AT+ G EL S++ GR +S++ NN +++++ + N N
Sbjct: 822 SADDAI-----ATMNGFELLGRSIKVGRPTKSSNNNNNNNNSINNNNNTNNNNNN---NN 873
Query: 166 INDDVD 171
IN++++
Sbjct: 874 INNNIN 879
Score = 106 (42.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 161 LYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
+Y+ +IN +V E +++ FSQ G +IS + + G KGFGFV F A+ AI T+
Sbjct: 771 IYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIATM 830
Query: 220 NG 221
NG
Sbjct: 831 NG 832
Score = 102 (41.0 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 74 FSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL--YAATVEGMELYAPSLRA 131
FS FG+I+S + GKSKGY F++Y QESA A++ + Y +++ P
Sbjct: 608 FSVFGNIKSLALGKDASGKSKGYAFIEYDNQESAAKALQSMTNYVMCGRAIKVARPFTGT 667
Query: 132 GRIQE 136
G Q+
Sbjct: 668 GSHQQ 672
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 107 (42.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 30/87 (34%), Positives = 41/87 (47%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIM---RTNRGISKGFGFVCFSNPDEANRAI 216
NL + ++ + + EL Q F G + S K+ TN+ SK FGFV F NP A AI
Sbjct: 271 NLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQ--SKCFGFVSFDNPASAQTAI 328
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSY 243
+NG K L V + + K Y
Sbjct: 329 QAMNGFQIGMKRLKVQLKRPKDANRPY 355
Score = 89 (36.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA-TVEG 121
+ ++F FG+I+ ++ DG SKG FV+YS+ A AI L+ + T+ G
Sbjct: 17 VRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPG 69
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 147 (56.8 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 47/175 (26%), Positives = 88/175 (50%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAA 117
+ LA+ I L FS G ++ +++ ++ + SKG +V++ +S AI L
Sbjct: 1 MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQ 59
Query: 118 TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQ 177
+ G+ + + +A + + +A NNL N LYV +++ ++ E L+
Sbjct: 60 RLLGVPIIVQASQAEKNRLAAMANNLQKGNGGP--------MRLYVGSLHFNITEDMLRG 111
Query: 178 YFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
F G I ++ +M+ ++ G SKG+GF+ FS+ + A RA+ LNG +P+ V
Sbjct: 112 IFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 166
Score = 37 (18.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 302 AGQAAANNLTNGNQRAAANNSMLAVASP 329
A QAAA L A N + L SP
Sbjct: 222 AAQAAALQLNGAVPLGALNPAALTALSP 249
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 132 (51.5 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAIN 217
K LYV +++ + E +L++ FS G ++SV I+ G SKG G+V +EA AI
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPG 254
TL+G L + + V++A+ +++ T K GPG
Sbjct: 63 TLDGALLRNRVITVSVARPQKQATRPAP-RRGKPGPG 98
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 132 (51.5 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAIN 217
K LYV +++ + E +L++ FS G ++SV I+ G SKG G+V +EA AI
Sbjct: 3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPG 254
TL+G L + + V++A+ +++ T K GPG
Sbjct: 63 TLDGALLRNRVITVSVARPQKQATRPAP-RRGKPGPG 98
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 150 (57.9 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 52/187 (27%), Positives = 92/187 (49%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLYAA 117
+N+ +T + + H F ++G + VV++Q +S+ +GFV YS+ E A +A
Sbjct: 13 LNVQTTDEGLRAH--FEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEA-DAAMSARPH 69
Query: 118 TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQ 177
V+G + L+ +E A + K K ++V + DD+++ L+
Sbjct: 70 IVDGNNV---DLKRAVAREDAGKPEMLAKV-----------KKIFVGGLKDDIEDEHLQD 115
Query: 178 YFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAI-NTLNGILFHQKPLYVAIAQ 235
YFSQ G I +++ + G +GFGFV F + D A++A+ + I H+ + V A
Sbjct: 116 YFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHK--VEVKKAL 173
Query: 236 TKRERTS 242
TK+E S
Sbjct: 174 TKQEMQS 180
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 158 (60.7 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 52/170 (30%), Positives = 82/170 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD--GK--SKGYGFVQYSTQESALNAIE 112
F NL + L +FSK G ++S + ++ G S G+GFV+Y E A A++
Sbjct: 738 FIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKALK 797
Query: 113 KLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
+L V+G +L S RA + +A+ + T +IL V+NI D
Sbjct: 798 QLQGHVVDGHKLEVRISERATKPAPTATRKKQVARK---QTTSKIL-----VRNIPFQAD 849
Query: 172 EIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAINTL 219
E+++ FS G + +V++ + T G +GFGFV F +A RA N L
Sbjct: 850 SREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNAL 899
Score = 115 (45.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 32/109 (29%), Positives = 56/109 (51%)
Query: 149 DDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRG---ISKGFGFV 204
+++ E + L++KN+N E LK FS+ G + S I + N+ +S GFGFV
Sbjct: 725 EEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFV 784
Query: 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQ--TKRERTSYLRIMYAKQ 251
+ P++A +A+ L G + L V I++ TK T+ + A++
Sbjct: 785 EYKKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARK 833
Score = 81 (33.6 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI 111
NL + + + Q+F+ FG + + ++DGK + +GF+ + ++E A A+
Sbjct: 8 NLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTAL 59
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 149 (57.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 52/173 (30%), Positives = 80/173 (46%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE 112
F F +L+ I + F+ FG I ++VV GKSKGYGFV + + A NAI
Sbjct: 97 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 156
Query: 113 KLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLD-DDVTEEILDKN--LYVKNIND 168
+ + G ++ + R +S NN K L +DV + KN +Y I
Sbjct: 157 HMGGQWLGGRQIRTNWATRKPPAPKSTQENN--TKQLRFEDVVNQSSPKNCTVYCGGIAS 214
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ + ++Q FS G I +++ KG+ FV FS + A AI ++NG
Sbjct: 215 GLTDQLMRQTFSPFGQIMEIRVFP-----EKGYSFVRFSTHESAAHAIVSVNG 262
Score = 42 (19.8 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 17 GTPFSLYVGDL--DSTDLLRL 35
G P +LYVG+L D T++L L
Sbjct: 6 GQPRTLYVGNLSRDVTEVLIL 26
>DICTYBASE|DDB_G0289337 [details] [associations]
symbol:DDB_G0289337 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289337 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000139 eggNOG:NOG145324 RefSeq:XP_636266.1
ProteinModelPortal:Q54HN5 EnsemblProtists:DDB0188369 GeneID:8627085
KEGG:ddi:DDB_G0289337 InParanoid:Q54HN5 OMA:MESINIS Uniprot:Q54HN5
Length = 1528
Score = 160 (61.4 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 52/177 (29%), Positives = 87/177 (49%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
+I L F +G I+S ++V+ +D +SKGY +++Y+ SA AIE++ +E M
Sbjct: 776 SITEKNLEDCFKVYGSIESCRIVIDKDTNESKGYAYIKYTKTSSAALAIEEMNGKILE-M 834
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+ +R I E+ + L D + + L+V N + E ELK F +
Sbjct: 835 DSSCSPIRV-LIAEAKGTKTKPL--LSSDPEDHPPNSRLFVV-CNKSLTEQELKNKFKEF 890
Query: 183 GIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTLN-GILFHQKPLYVAIAQTK 237
G + +V+++R + SKG F+ FS A A+ ++N + PL V IAQ K
Sbjct: 891 GNLENVRLIREKSTNDSKGCAFIKFSKASTAAIAMESINISNTGEEYPLKVFIAQPK 947
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 149 (57.5 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 52/173 (30%), Positives = 80/173 (46%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE 112
F F +L+ I + F+ FG I ++VV GKSKGYGFV + + A NAI
Sbjct: 97 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 156
Query: 113 KLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLD-DDVTEEILDKN--LYVKNIND 168
+ + G ++ + R +S NN K L +DV + KN +Y I
Sbjct: 157 HMGGQWLGGRQIRTNWATRKPPAPKSTQENN--TKQLRFEDVVNQSSPKNCTVYCGGIAS 214
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ + ++Q FS G I +++ KG+ FV FS + A AI ++NG
Sbjct: 215 GLTDQLMRQTFSPFGQIMEIRVFP-----EKGYSFVRFSTHESAAHAIVSVNG 262
Score = 42 (19.8 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 17 GTPFSLYVGDL--DSTDLLRL 35
G P +LYVG+L D T++L L
Sbjct: 6 GQPRTLYVGNLSRDVTEVLIL 26
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 150 (57.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 53/184 (28%), Positives = 90/184 (48%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG--KSKGYGFVQYSTQESALNAIEKLYA 116
+N+ +T D L F +FG++ VVV D +S+ +GFV YST E A +A
Sbjct: 15 LNVQTTNDG--LRSYFEQFGNLTDC-VVVQNDQLQRSRCFGFVTYSTSEEA-DAAMAARP 70
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V+G + ++ +E A K K ++V + DD++E +L
Sbjct: 71 HVVDGKNV---EVKRAVAREDAGRPEALAKV-----------KKIFVGGLKDDIEEKDLT 116
Query: 177 QYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++FSQ G+I +++ + G +GFGFV F + D A++A+ L + + + V A
Sbjct: 117 EFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAV-VLKFHMINGHKVEVKKAL 175
Query: 236 TKRE 239
TK+E
Sbjct: 176 TKQE 179
>UNIPROTKB|Q86SG3 [details] [associations]
symbol:DAZ4 "Deleted in azoospermia protein 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 EMBL:AC006338 UniGene:Hs.522868
UniGene:Hs.70936 MIM:400003 MIM:415000 Orphanet:1646
HOVERGEN:HBG048860 GermOnline:ENSG00000188120 EMBL:AF248482
EMBL:AF248483 EMBL:BC047480 EMBL:BC047617 IPI:IPI00160336
IPI:IPI00401506 RefSeq:NP_001005375.1 RefSeq:NP_065153.1
ProteinModelPortal:Q86SG3 SMR:Q86SG3 STRING:Q86SG3
PhosphoSite:Q86SG3 DMDM:44887840 PRIDE:Q86SG3
Ensembl:ENST00000440066 Ensembl:ENST00000449750 GeneID:57135
KEGG:hsa:57135 UCSC:uc004fvm.3 UCSC:uc004fvn.3 CTD:57135
GeneCards:GC0YP026979 HGNC:HGNC:15966 neXtProt:NX_Q86SG3
PharmGKB:PA27152 InParanoid:Q86SG3 ChiTaRS:DAZ4 GenomeRNAi:57135
NextBio:63055 ArrayExpress:Q86SG3 Bgee:Q86SG3 CleanEx:HS_DAZ4
Genevestigator:Q86SG3 Uniprot:Q86SG3
Length = 579
Score = 116 (45.9 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
+I+ ++V I+ +DE E+ F + G + VKI+ G+SKG+GFV F N + +
Sbjct: 201 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQK 260
Query: 215 AINTLNGILFHQKPLYVAIAQTKRE 239
+ + I FH K L + A K++
Sbjct: 261 IVGSQ--IHFHGKKLKLGPAIRKQK 283
Score = 116 (45.9 bits), Expect = 0.00090, P = 0.00090
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
+I+ ++V I+ +DE E+ F + G + VKI+ G+SKG+GFV F N + +
Sbjct: 36 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQK 95
Query: 215 AINTLNGILFHQKPLYVAIAQTKRE 239
+ + I FH K L + A K++
Sbjct: 96 IVGSQ--IHFHGKKLKLGPAIRKQK 118
Score = 84 (34.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQY 101
F + + +D ++ F ++G ++ K++ ++ G SKGYGFV +
Sbjct: 43 FVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSF 87
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 154 (59.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 49/188 (26%), Positives = 92/188 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L + FS G ++ +++ ++ + SKG +V++ S AI L
Sbjct: 156 FCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LT 214
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G+ + + +A + + +A NNL + LYV +++ ++ E L
Sbjct: 215 GQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP--------MRLYVGSLHFNITEDML 266
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ F G I S+++M + G SKG+GF+ FS+ + A +A+ LNG +P+ V
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
Query: 235 QTKRERTS 242
+ + +S
Sbjct: 327 TERTDASS 334
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 154 (59.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 49/188 (26%), Positives = 92/188 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L + FS G ++ +++ ++ + SKG +V++ S AI L
Sbjct: 156 FCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LT 214
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G+ + + +A + + +A NNL + LYV +++ ++ E L
Sbjct: 215 GQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP--------MRLYVGSLHFNITEDML 266
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ F G I S+++M + G SKG+GF+ FS+ + A +A+ LNG +P+ V
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
Query: 235 QTKRERTS 242
+ + +S
Sbjct: 327 TERTDASS 334
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 154 (59.3 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 49/188 (26%), Positives = 92/188 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L + FS G ++ +++ ++ + SKG +V++ S AI L
Sbjct: 156 FCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LT 214
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G+ + + +A + + +A NNL + LYV +++ ++ E L
Sbjct: 215 GQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP--------MRLYVGSLHFNITEDML 266
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ F G I S+++M + G SKG+GF+ FS+ + A +A+ LNG +P+ V
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
Query: 235 QTKRERTS 242
+ + +S
Sbjct: 327 TERTDASS 334
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 105 (42.0 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY- 115
F L+ + L +IF+KFG I+ V+ QDGKS+G FV ++ + A+ A ++++
Sbjct: 145 FIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHH 204
Query: 116 AATVEG 121
+ T+EG
Sbjct: 205 SQTMEG 210
Score = 96 (38.9 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL++ ++ D + +L F+ G I S K+ +SK FGFV + N A AI+
Sbjct: 504 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 563
Query: 219 LNGILFHQKPLYVAI 233
+NG K L V +
Sbjct: 564 MNGFQIGSKRLKVQL 578
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 154 (59.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 49/188 (26%), Positives = 92/188 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L + FS G ++ +++ ++ + SKG +V++ S AI L
Sbjct: 156 FCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LT 214
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G+ + + +A + + +A NNL + LYV +++ ++ E L
Sbjct: 215 GQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP--------MRLYVGSLHFNITEDML 266
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ F G I S+++M + G SKG+GF+ FS+ + A +A+ LNG +P+ V
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
Query: 235 QTKRERTS 242
+ + +S
Sbjct: 327 TERTDASS 334
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 154 (59.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 49/188 (26%), Positives = 92/188 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L + FS G ++ +++ ++ + SKG +V++ S AI L
Sbjct: 156 FCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LT 214
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G+ + + +A + + +A NNL + LYV +++ ++ E L
Sbjct: 215 GQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP--------MRLYVGSLHFNITEDML 266
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ F G I S+++M + G SKG+GF+ FS+ + A +A+ LNG +P+ V
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
Query: 235 QTKRERTS 242
+ + +S
Sbjct: 327 TERTDASS 334
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 154 (59.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 49/188 (26%), Positives = 92/188 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L + FS G ++ +++ ++ + SKG +V++ S AI L
Sbjct: 156 FCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LT 214
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G+ + + +A + + +A NNL + LYV +++ ++ E L
Sbjct: 215 GQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP--------MRLYVGSLHFNITEDML 266
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ F G I S+++M + G SKG+GF+ FS+ + A +A+ LNG +P+ V
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
Query: 235 QTKRERTS 242
+ + +S
Sbjct: 327 TERTDASS 334
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 154 (59.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 49/188 (26%), Positives = 92/188 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L + FS G ++ +++ ++ + SKG +V++ S AI L
Sbjct: 156 FCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LT 214
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G+ + + +A + + +A NNL + LYV +++ ++ E L
Sbjct: 215 GQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP--------MRLYVGSLHFNITEDML 266
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ F G I S+++M + G SKG+GF+ FS+ + A +A+ LNG +P+ V
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
Query: 235 QTKRERTS 242
+ + +S
Sbjct: 327 TERTDASS 334
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 154 (59.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 49/188 (26%), Positives = 92/188 (48%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L + FS G ++ +++ ++ + SKG +V++ S AI L
Sbjct: 156 FCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LT 214
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G+ + + +A + + +A NNL + LYV +++ ++ E L
Sbjct: 215 GQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP--------MRLYVGSLHFNITEDML 266
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ F G I S+++M + G SKG+GF+ FS+ + A +A+ LNG +P+ V
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 326
Query: 235 QTKRERTS 242
+ + +S
Sbjct: 327 TERTDASS 334
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 149 (57.5 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 52/173 (30%), Positives = 80/173 (46%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE 112
F F +L+ I + F+ FG I ++VV GKSKGYGFV + + A NAI
Sbjct: 113 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 172
Query: 113 KLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLD-DDVTEEILDKN--LYVKNIND 168
+ + G ++ + R +S NN K L +DV + KN +Y I
Sbjct: 173 HMGGQWLGGRQIRTNWATRKPPAPKSTQENN--TKQLRFEDVVNQSSPKNCTVYCGGIAS 230
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ + ++Q FS G I +++ KG+ FV FS + A AI ++NG
Sbjct: 231 GLTDQLMRQTFSPFGQIMEIRVFP-----EKGYSFVRFSTHESAAHAIVSVNG 278
Score = 42 (19.8 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 17 GTPFSLYVGDL--DSTDLLRL 35
G P +LYVG+L D T++L L
Sbjct: 5 GQPRTLYVGNLSRDVTEVLIL 25
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 149 (57.5 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 52/173 (30%), Positives = 80/173 (46%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE 112
F F +L+ I + F+ FG I ++VV GKSKGYGFV + + A NAI
Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 113 KLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLD-DDVTEEILDKN--LYVKNIND 168
+ + G ++ + R +S NN K L +DV + KN +Y I
Sbjct: 174 HMGGQWLGGRQIRTNWATRKPPAPKSTQENN--TKQLRFEDVVNQSSPKNCTVYCGGIAS 231
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ + ++Q FS G I +++ KG+ FV FS + A AI ++NG
Sbjct: 232 GLTDQLMRQTFSPFGQIMEIRVFP-----EKGYSFVRFSTHESAAHAIVSVNG 279
Score = 42 (19.8 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 17 GTPFSLYVGDL--DSTDLLRL 35
G P +LYVG+L D T++L L
Sbjct: 6 GQPRTLYVGNLSRDVTEVLIL 26
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 152 (58.6 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 51/181 (28%), Positives = 94/181 (51%)
Query: 66 DNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAATV----- 119
+N+ L F G++ S+KV+ + Q G+S+GYGF+++ + +A I + Y T+
Sbjct: 97 ENY-LSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAA-ETILQTYNGTLMPNVE 154
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
+ + SL AG ++ ++ + ++V +L DVT+ IL + K +
Sbjct: 155 QNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETF--------------KSVY 200
Query: 180 SQCGIISSVKIMRTNR--GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
S + K++ T+R G SKG+GFV F++ E RA+ +NG+L +P+ + A K
Sbjct: 201 SS---VRGAKVV-TDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANK 256
Query: 238 R 238
+
Sbjct: 257 K 257
Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 44/170 (25%), Positives = 82/170 (48%)
Query: 57 FTVNLASTIDNWKLHQIF-SKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL 114
F +LA+ + ++ L + F S + ++ +KVV + G+SKGYGFV+++ + L A+ ++
Sbjct: 179 FVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEM 238
Query: 115 YAATVEGMEL-YAPSLRAGRI--QESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
+ P+ + + A++ N + D + ++V ++ V
Sbjct: 239 NGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPN----NTTIFVGGLDPTVA 294
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
E L+Q FS G + VKI+ R GFV F A +A+++LNG
Sbjct: 295 EEHLRQVFSPYGELVHVKIVAGKR-----CGFVQFGTRASAEQALSSLNG 339
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 131 (51.2 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 44/135 (32%), Positives = 68/135 (50%)
Query: 103 TQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
TQE L +++ A ME A LRA +QE ++N D E I +++Y
Sbjct: 9 TQEKELLEMKERVAE----MEAEAAKLRA--MQEQLDNETEALRN-D---KESIDAQSVY 58
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNG 221
V N++ V EL+ +F+ CG ++ V I+ G KGF ++ FS P A+ LNG
Sbjct: 59 VGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LLNG 117
Query: 222 ILFHQKPLYVAIAQT 236
+ H++PL V +T
Sbjct: 118 SMLHERPLKVTPKRT 132
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 149 (57.5 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 52/173 (30%), Positives = 80/173 (46%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE 112
F F +L+ I + F+ FG I ++VV GKSKGYGFV + + A NAI
Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 113 KLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLD-DDVTEEILDKN--LYVKNIND 168
+ + G ++ + R +S NN K L +DV + KN +Y I
Sbjct: 174 HMGGQWLGGRQIRTNWATRKPPAPKSTQENN--TKQLRFEDVVNQSSPKNCTVYCGGIAS 231
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ + ++Q FS G I +++ KG+ FV FS + A AI ++NG
Sbjct: 232 GLTDQLMRQTFSPFGQIMEIRVFP-----EKGYSFVRFSTHESAAHAIVSVNG 279
Score = 42 (19.8 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 17 GTPFSLYVGDL--DSTDLLRL 35
G P +LYVG+L D T++L L
Sbjct: 6 GQPRTLYVGNLSRDVTEVLIL 26
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 149 (57.5 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 52/173 (30%), Positives = 80/173 (46%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE 112
F F +L+ I + F+ FG I ++VV GKSKGYGFV + + A NAI
Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 113 KLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLD-DDVTEEILDKN--LYVKNIND 168
+ + G ++ + R +S NN K L +DV + KN +Y I
Sbjct: 174 HMGGQWLGGRQIRTNWATRKPPAPKSTQENN--TKQLRFEDVVNQSSPKNCTVYCGGIAS 231
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ + ++Q FS G I +++ KG+ FV FS + A AI ++NG
Sbjct: 232 GLTDQLMRQTFSPFGQIMEIRVFP-----EKGYSFVRFSTHESAAHAIVSVNG 279
Score = 42 (19.8 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 17 GTPFSLYVGDL--DSTDLLRL 35
G P +LYVG+L D T++L L
Sbjct: 6 GQPRTLYVGNLSRDVTEVLIL 26
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 147 (56.8 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 52/200 (26%), Positives = 95/200 (47%)
Query: 41 ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFV 99
A +D +A+ T + NL +D+ L QI F + + +V+ ++D G+S+G+ FV
Sbjct: 75 AVLDPPAAVNTKLYFG---NLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFV 131
Query: 100 QYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK 159
S E I+ L +G E +L+ +F + N + E +
Sbjct: 132 TMSNVEDCNIIIDNL-----DGTEYLGRALKV-------NFADKPKPNKEPLYPET--EH 177
Query: 160 NLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
L+V N++ V L F +CG ++ + + + G S+G+GFVC+S+ E A+ +
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 219 LNGILFHQKPLYVAIAQTKR 238
L+G + + V +AQ K+
Sbjct: 238 LDGFELEGRAIRVNLAQGKK 257
>UNIPROTKB|Q1RMF9 [details] [associations]
symbol:DAZ1 "DAZ1 protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:NP_004072.3
UniGene:Hs.522868 UniGene:Hs.70936 GeneID:1617 KEGG:hsa:1617
CTD:1617 HGNC:HGNC:2682 PharmGKB:PA27149 HOVERGEN:HBG048860
GenomeRNAi:1617 NextBio:6642 EMBL:AC053490 EMBL:AC010088
EMBL:BC114927 IPI:IPI00942129 SMR:Q1RMF9 STRING:Q1RMF9
Ensembl:ENST00000382510 Uniprot:Q1RMF9
Length = 613
Score = 116 (45.9 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
+I+ ++V I+ +DE E+ F + G + VKI+ G+SKG+GFV F N + +
Sbjct: 366 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQK 425
Query: 215 AINTLNGILFHQKPLYVAIAQTKRE 239
+ + I FH K L + A K++
Sbjct: 426 IVGSQ--IHFHGKKLKLGPAIRKQK 448
Score = 116 (45.9 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
+I+ ++V I+ +DE E+ F + G + VKI+ G+SKG+GFV F N + +
Sbjct: 201 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQK 260
Query: 215 AINTLNGILFHQKPLYVAIAQTKRE 239
+ + I FH K L + A K++
Sbjct: 261 IVGSQ--IHFHGKKLKLGPAIRKQK 283
Score = 116 (45.9 bits), Expect = 0.00097, P = 0.00097
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
+I+ ++V I+ +DE E+ F + G + VKI+ G+SKG+GFV F N + +
Sbjct: 36 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQK 95
Query: 215 AINTLNGILFHQKPLYVAIAQTKRE 239
+ + I FH K L + A K++
Sbjct: 96 IVGSQ--IHFHGKKLKLGPAIRKQK 118
Score = 84 (34.6 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQY 101
F + + +D ++ F ++G ++ K++ ++ G SKGYGFV +
Sbjct: 208 FVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSF 252
Score = 84 (34.6 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQY 101
F + + +D ++ F ++G ++ K++ ++ G SKGYGFV +
Sbjct: 43 FVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSF 87
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 152 (58.6 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 48/177 (27%), Positives = 90/177 (50%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L FS G ++ +++ ++ + SKG +V++ +S AI L
Sbjct: 170 FCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LT 228
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G+ + + +A + + +A NNL K + LYV +++ ++ E L
Sbjct: 229 GQRLLGVPIIVQASQAEKNRLAAMANNLQ-KGSSGPM-------RLYVGSLHFNITEDML 280
Query: 176 KQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ F G I ++ +M+ ++ G SKG+GF+ FS+ + A RA+ LNG +P+ V
Sbjct: 281 RGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 337
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 151 (58.2 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 47/177 (26%), Positives = 90/177 (50%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L FS G ++ +++ ++ + SKG +V++ +S AI L
Sbjct: 160 FCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LT 218
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G+ + + +A + + +A NNL K + LYV +++ ++ E L
Sbjct: 219 GQRLLGVPIIVQASQAEKNRLAAMANNLQ-KGTGGPM-------RLYVGSLHFNITEDML 270
Query: 176 KQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ F G I ++ +M+ ++ G SKG+GF+ FS+ + A RA+ LNG +P+ +
Sbjct: 271 RGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRI 327
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 153 (58.9 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 47/189 (24%), Positives = 90/189 (47%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + + +L+ F + G ++ +++V + G+SKG +V++ ++S AI L
Sbjct: 243 FVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-LS 301
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G+ + A + +++ L + EI L V NI+ ++ + ++
Sbjct: 302 GKRLLGLPVIVQLTEAEKNRKARE-----AAELARAASAEIPFHRLCVSNIHFNLTDEDV 356
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F G I V + R ++ SKGFG++ + NP A A+ +NG + + V +
Sbjct: 357 KAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGN 416
Query: 236 TK--RERTS 242
K E TS
Sbjct: 417 DKFTTETTS 425
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 154 (59.3 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 50/194 (25%), Positives = 93/194 (47%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS-KGYGFVQYSTQESALNAIEKLY 115
F L + + +L ++FS+ G ++ VV + K+ +G+G+V +S E A++++
Sbjct: 7 FVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI- 65
Query: 116 AATVEGMEL---YAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKN--LYVKNINDD 169
T EG ++ A + + +E N + + ++ DK L ++N++
Sbjct: 66 -TTFEGCKINVTIAKKKQRNKSKEKGENENSEPPKKEPKPKKPKVADKKARLIIRNLSFK 124
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E +LK F Q G + V I R G +GF FV F N EA +A+ ++N + +
Sbjct: 125 CSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKGRTV 184
Query: 230 YV--AIAQTKRERT 241
V A+A+ K + T
Sbjct: 185 AVDWAVAKDKYKNT 198
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 150 (57.9 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 54/204 (26%), Positives = 100/204 (49%)
Query: 70 LHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGM--ELYA 126
L+ F+ G++ S+KV+ + Q G+ +GYGF+++++ +A ++ A + +L+
Sbjct: 78 LYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFR 137
Query: 127 ---PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG 183
SL +G ++ + ++V +L DVT+ IL + Y S G
Sbjct: 138 LNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRAS-------------YPSVKG 184
Query: 184 IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSY 243
+ V I R G +KG+GFV FS+ E RA+ +NG+ +P+ + A +K+ T
Sbjct: 185 --AKVVIDRVT-GRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQ 241
Query: 244 LRIMYAKQGPGLASTNFPVHPTLY 267
R Y G+ + N P + T++
Sbjct: 242 -RDSYQSSAAGVTTDNDPNNTTVF 264
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 52/196 (26%), Positives = 94/196 (47%)
Query: 32 LLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIF-SKFGDIQSSKVVVSQ- 89
L RL A ++S D +P + F +LA+ + ++ L + F + + ++ +KVV+ +
Sbjct: 135 LFRLNWASLSSGDKRDD--SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRV 192
Query: 90 DGKSKGYGFVQYSTQESALNAIEKLYAA--TVEGMELYAPSLRAGRIQESASFNNLYVK- 146
G++KGYGFV++S + + A+ ++ + M + + + G + S+ +
Sbjct: 193 TGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGV 252
Query: 147 NLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCF 206
D+D + ++V ++ V + LK FSQ G I VKI R GFV F
Sbjct: 253 TTDNDPN----NTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKR-----CGFVQF 303
Query: 207 SNPDEANRAINTLNGI 222
S A A+ LNG+
Sbjct: 304 SEKSCAEEALRMLNGV 319
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 129 (50.5 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 28/51 (54%), Positives = 35/51 (68%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESA 107
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A
Sbjct: 57 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAA 106
Score = 95 (38.5 bits), Expect = 0.00041, P = 0.00041
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A R
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 108
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 149 (57.5 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 42/121 (34%), Positives = 66/121 (54%)
Query: 140 FNN-LYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGI 197
FN + +K + D + + NL++ N++ DVDE L FS+ G II + K+MR G+
Sbjct: 80 FNKEIKIKKENKDKVD--IGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGV 137
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK--RER--TSYLRIMYAKQGP 253
SKGF F+ F + + ++ AI +N KP+ V A+ K ER +S RI+ A +
Sbjct: 138 SKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNERHGSSAERIIAASRNT 197
Query: 254 G 254
G
Sbjct: 198 G 198
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 147 (56.8 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 49/168 (29%), Positives = 78/168 (46%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD--GK--SKGYGFVQYSTQESALNAIE 112
F NL L + FSK G ++S + +D GK S GYGFVQY T E+A A+
Sbjct: 705 FIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQKAMR 764
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+L TV+ +L + ++ + + T +IL V+NI
Sbjct: 765 QLQHCTVDEHQLEV-KISEREVKSGVAQAKRKKQTARKQTTSKIL-----VRNIPFQATV 818
Query: 173 IELKQYFSQCGIISSVKIMRTNRGIS-KGFGFVCFSNPDEANRAINTL 219
EL++ F G + +V++ + G S +GFGF+ F +A +A + L
Sbjct: 819 KELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 136 (52.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 54/199 (27%), Positives = 97/199 (48%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQ--SSKVVVSQDGKSKGYGFVQYSTQ---ES 106
PT FTV L N K Q+ ++ + + + DG++ GY +V ++ E
Sbjct: 286 PT-TEFTVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVER 344
Query: 107 ALNAIEKLYAATVEGMELY-APSLRAGRIQESAS-FNNLYVKNLDDDVTEEILDKN--LY 162
AL ++K Y +E++ A + + R S +V+ L DD EE + ++ L+
Sbjct: 345 ALR-LDKDYMGG-RYIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEEDVAESGRLF 402
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
++N+ E +LK+ FS+ G +S V + + KGF FV + P+ A A+ L+G
Sbjct: 403 IRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQLDG 462
Query: 222 ILFHQKPLYVAIAQTKRER 240
F + L+V ++ K+E+
Sbjct: 463 HTFQGRVLHVMASRLKKEK 481
Score = 121 (47.7 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 135 QESASFNNLYVKNLDDDVTEEILDK-----NLYVKNINDDVDEIELKQYFSQCGIISSVK 189
+E ++ N V+N +++ EE D+ L++KN+N E L++ FS+CG++ S
Sbjct: 673 KEKSAVKNDSVQNEEEEEEEEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCGVVKSCT 732
Query: 190 IM--RTNRG--ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
I R G +S G+GFV + P+ A +A+ L + L V I++
Sbjct: 733 ISKKRDKAGKLLSMGYGFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKISE 782
Score = 81 (33.6 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL + + + ++F+ FG + + ++DGK + +GFV + T+E A A++ + V
Sbjct: 8 NLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHFNKSFV 67
Query: 120 E 120
+
Sbjct: 68 D 68
>UNIPROTKB|Q9NQZ3 [details] [associations]
symbol:DAZ1 "Deleted in azoospermia protein 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0045948
EMBL:AC006338 EMBL:AF271087 EMBL:AF271088 IPI:IPI00334616
RefSeq:NP_004072.3 UniGene:Hs.522868 UniGene:Hs.70936
ProteinModelPortal:Q9NQZ3 SMR:Q9NQZ3 IntAct:Q9NQZ3 MINT:MINT-254473
STRING:Q9NQZ3 PhosphoSite:Q9NQZ3 DMDM:44887841 PRIDE:Q9NQZ3
Ensembl:ENST00000405239 GeneID:1617 KEGG:hsa:1617 UCSC:uc004fvl.3
CTD:1617 GeneCards:GC0YM025275 HGNC:HGNC:2682 MIM:400003 MIM:415000
neXtProt:NX_Q9NQZ3 Orphanet:1646 PharmGKB:PA27149 eggNOG:KOG0118
HOGENOM:HOG000207950 HOVERGEN:HBG048860 InParanoid:Q9NQZ3
OMA:NYQAYSP GenomeRNAi:1617 NextBio:6642 ArrayExpress:Q9NQZ3
Bgee:Q9NQZ3 CleanEx:HS_DAZ1 Genevestigator:Q9NQZ3
GermOnline:ENSG00000188120 Uniprot:Q9NQZ3
Length = 744
Score = 116 (45.9 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
+I+ ++V I+ +DE E+ F + G + VKI+ G+SKG+GFV F N + +
Sbjct: 366 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQK 425
Query: 215 AINTLNGILFHQKPLYVAIAQTKRE 239
+ + I FH K L + A K++
Sbjct: 426 IVGSQ--IHFHGKKLKLGPAIRKQK 448
Score = 116 (45.9 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
+I+ ++V I+ +DE E+ F + G + VKI+ G+SKG+GFV F N + +
Sbjct: 201 KIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQK 260
Query: 215 AINTLNGILFHQKPLYVAIAQTKRE 239
+ + I FH K L + A K++
Sbjct: 261 IVGSQ--IHFHGKKLKLGPAIRKQK 283
Score = 84 (34.6 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQY 101
F + + +D ++ F ++G ++ K++ ++ G SKGYGFV +
Sbjct: 208 FVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSF 252
Score = 84 (34.6 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQY 101
F + + +D ++ F ++G ++ K++ ++ G SKGYGFV +
Sbjct: 43 FVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSF 87
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 149 (57.5 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 50/173 (28%), Positives = 82/173 (47%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE 112
F F +L+ I + F+ FG I ++VV GKSKGYGFV + + A NAI+
Sbjct: 95 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 154
Query: 113 KLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLD-DDVTEEILDKN--LYVKNIND 168
++ + G ++ + R +S +N K L DDV + N +Y +
Sbjct: 155 QMGGQWLGGRQIRTNWATRKPPAPKSTYESN--TKQLSYDDVVNQSSPSNCTVYCGGVTS 212
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ E ++Q FS G I +++ KG+ FV F++ + A AI ++NG
Sbjct: 213 GLTEQLMRQTFSPFGQIMEIRVFP-----DKGYSFVRFNSHESAAHAIVSVNG 260
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 132 (51.5 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 42/133 (31%), Positives = 65/133 (48%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++V ++ ++EL Q+F G + S +I R G +KG+GFV F+NP+ A AI +
Sbjct: 151 NVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGM 210
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHP-TLYQRALQVYQAPG 278
+G K L V Q K+ Y+++ Q P L P P ++ Q + + P
Sbjct: 211 HGFYVSGKHLKV---QLKKGEEHYVQMNTPAQ-PQLT----PAQPYSVQQPIIGNHHQPY 262
Query: 279 FRH---GGM-IPN 287
H GGM PN
Sbjct: 263 MTHLMYGGMDSPN 275
Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 50 ATPTFIP-----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQ 104
+ P+F P F +L S + +L+Q F FG + S+++ +G++KGYGFV ++
Sbjct: 141 SAPSFGPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNP 200
Query: 105 ESALNAIEKLYAATVEGMEL 124
ESALNAI+ ++ V G L
Sbjct: 201 ESALNAIKGMHGFYVSGKHL 220
Score = 53 (23.7 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 75 SKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114
+K+G I V + +G+ F+ Y + A AIE L
Sbjct: 28 AKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEAL 67
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 132 (51.5 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 42/133 (31%), Positives = 65/133 (48%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++V ++ ++EL Q+F G + S +I R G +KG+GFV F+NP+ A AI +
Sbjct: 151 NVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGM 210
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHP-TLYQRALQVYQAPG 278
+G K L V Q K+ Y+++ Q P L P P ++ Q + + P
Sbjct: 211 HGFYVSGKHLKV---QLKKGEEHYVQMNTPAQ-PQLT----PAQPYSVQQPIIGNHHQPY 262
Query: 279 FRH---GGM-IPN 287
H GGM PN
Sbjct: 263 MTHLMYGGMDSPN 275
Score = 126 (49.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 50 ATPTFIP-----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQ 104
+ P+F P F +L S + +L+Q F FG + S+++ +G++KGYGFV ++
Sbjct: 141 SAPSFGPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNP 200
Query: 105 ESALNAIEKLYAATVEGMEL 124
ESALNAI+ ++ V G L
Sbjct: 201 ESALNAIKGMHGFYVSGKHL 220
Score = 53 (23.7 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 75 SKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114
+K+G I V + +G+ F+ Y + A AIE L
Sbjct: 28 AKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEAL 67
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 149 (57.5 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 48/186 (25%), Positives = 91/186 (48%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAA 117
+ LA+ I L + FS G ++ +++ ++ + SKG +V++ S AI L
Sbjct: 1 MQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG-LTGQ 59
Query: 118 TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQ 177
V G+ + + +A + + +A NNL + LYV +++ ++ E L+
Sbjct: 60 RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGP--------MRLYVGSLHFNITEDMLRG 111
Query: 178 YFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G I S+++M + G SKG+GF+ FS+ + A +A+ LNG +P+ V
Sbjct: 112 IFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 171
Query: 237 KRERTS 242
+ + +S
Sbjct: 172 RTDASS 177
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 114 (45.2 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 153 TEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDE 211
TE NL++ NI + ++ EL F G + S K+ GISK FGF+ + +
Sbjct: 333 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 392
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRE 239
A AINT+NG K L V Q KR+
Sbjct: 393 AQNAINTMNGCQLSGKKLKV---QLKRD 417
Score = 80 (33.2 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 43 IDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYS 102
+DV P F L + ++ +FS++G I+ +++ SKG F++Y
Sbjct: 98 LDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYE 157
Query: 103 TQESALNAIEKL 114
++E A+ A+E L
Sbjct: 158 SKEQAVAAMEAL 169
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 147 (56.8 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 46/175 (26%), Positives = 79/175 (45%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++ + ++F + G + + +++ +DGK++G+ FV ++ E A AI+K
Sbjct: 98 FVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDT 157
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G + R + S N+L D T LYV N+ L+
Sbjct: 158 FQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGD--TRH----KLYVSNLAWKARSTHLR 211
Query: 177 QYFSQCGI--ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+ F+ +S+ + G S G+GFV F+ +EA AI LNG +P+
Sbjct: 212 ELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPI 266
Score = 123 (48.4 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 35/113 (30%), Positives = 57/113 (50%)
Query: 57 FTVNLASTIDNWKLHQIFSK--FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114
+ NLA + L ++F+ F + + V +G+S GYGFV ++T+E A NAI KL
Sbjct: 197 YVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKL 256
Query: 115 YAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
+ G + SLR+ ES +++ N +D + + DKN +NI
Sbjct: 257 NGKEIMGRPITLKFSLRSA--SESEDGDSVEANNASED-GDTVEDKNTSEENI 306
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 149 (57.5 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 61/240 (25%), Positives = 102/240 (42%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE 112
F F +L+ I + F+ FG I ++VV GKSKGYGFV + + A NAI+
Sbjct: 96 FHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 155
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLD-DDVTEEILDKN--LYVKNINDD 169
++ + G ++ A++ K+L D+V + N +Y +
Sbjct: 156 QMGGQWLGGRQIRTNWATRKPPAPKATYET-NTKHLSFDEVVNQSSPSNCTVYCGGVTTG 214
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+ E ++Q FS G I V++ KG+ FV F++ + A AI ++NG
Sbjct: 215 LTEQLMRQTFSPFGQIMEVRVFP-----DKGYSFVRFNSHESAAHAIVSVNGTSLEG--- 266
Query: 230 YVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGF 289
++ +E T + M Q P + F P Y + Q Y + +PNG+
Sbjct: 267 HIVKCYWGKETTDMVSPMQQVQVPQQSKVGFAAQP--YGQWGQWY-GNAQQISQYVPNGW 323
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 152 (58.6 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 48/177 (27%), Positives = 89/177 (50%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F + LA+ I L FS G ++ +++ ++ + SKG +V++ +S AI L
Sbjct: 169 FCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG-LT 227
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G+ + + +A + + +A NNL N LYV +++ ++ E L
Sbjct: 228 GQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGP--------MRLYVGSLHFNITEDML 279
Query: 176 KQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ F G I ++ +M+ ++ G SKG+GF+ FS+ + A RA+ LNG +P+ V
Sbjct: 280 RGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
Score = 37 (18.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 302 AGQAAANNLTNGNQRAAANNSMLAVASP 329
A QAAA L A N + L SP
Sbjct: 392 AAQAAALQLNGAVPLGALNPAALTALSP 419
WARNING: HSPs involving 592 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 354 347 0.00098 116 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 842
No. of states in DFA: 602 (64 KB)
Total size of DFA: 202 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.89u 0.10s 28.99t Elapsed: 00:00:01
Total cpu time: 28.95u 0.10s 29.05t Elapsed: 00:00:01
Start: Mon May 20 19:17:32 2013 End: Mon May 20 19:17:33 2013
WARNINGS ISSUED: 2