BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036905
(354 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/377 (34%), Positives = 184/377 (48%), Gaps = 90/377 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL I L + FS+FG I S + + G S+G+GFV + + A A+E++
Sbjct: 195 YVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERM-- 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
G EL + L GR Q+ A + + ++ E+I N+YVKNI+DDV +
Sbjct: 253 ---NGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDE 309
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
EL+++FSQCG I+S K+M+ ++G SKGFGFVCFS+ +EA++A+NT +G +FH+KPLYVAI
Sbjct: 310 ELREHFSQCGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAI 369
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHP------------TLYQRALQVYQA----P 277
AQ K ER + L++ YA++ G + PV P ++ R +YQ P
Sbjct: 370 AQRKEERQAQLQLQYAQRIAGFHGPSTPVIPGGYTPLYYTAPSQVHPRPGMMYQPLAMRP 429
Query: 278 GFRHGGMIP----------------------------NGFSSP------------PPSPL 297
G+R G P NG P P PL
Sbjct: 430 GWRGNGFAPPSRPVFQPSHLPVMPISQRQHKQGRVRMNGHVLPQGGTQSVSYVQQPAQPL 489
Query: 298 FL------TRAGQA--------------------AANNLTNGNQRAAANNSMLAVASPDE 331
RAGQA A N+ +Q + +SMLA ASPDE
Sbjct: 490 TSLKDPSNQRAGQAKYVPNGRTCDVSKGSGVLSAAPNSTGPVSQGSEVLSSMLAAASPDE 549
Query: 332 RKDILGQGLYPLVKKLK 348
+K ILG+ LYPLV+K K
Sbjct: 550 QKQILGEQLYPLVRKHK 566
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 113/199 (56%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ +IDN L ++F +FG + S KV +DGKSKG+GFVQ+ +++SA +AIEKL
Sbjct: 104 YVKNLSESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLNG 163
Query: 117 ATVEGMELYAPSL--RAGRIQES--ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ V ++Y ++ R+ S A + NLYVKNLD +TEE+
Sbjct: 164 SIVGDKQIYVGKFVKKSDRVLPSPDAKYTNLYVKNLDPGITEEL---------------- 207
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS+ G I SV I R G S+GFGFV F NPD+A A+ +NG K LYV
Sbjct: 208 --LQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVG 265
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ + ER LR + ++
Sbjct: 266 RAQKRAEREQILRRQFEEK 284
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 92/200 (46%), Gaps = 26/200 (13%)
Query: 49 MATPTFIPFTV-------NLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQ 100
MA P+ I T L + + +L FS+F + S +V S G+S YG+V
Sbjct: 1 MAVPSTISATATASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVN 60
Query: 101 YSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN 160
+ + E A+ AIE + G + R+ S + D D + N
Sbjct: 61 FISPEDAIRAIETKNHTPLNGKLM--------RVMWS---------HRDPDARRNGIG-N 102
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+YVKN+++ +D + L++ F + G + S K+ G SKG GFV F + D AN AI LN
Sbjct: 103 VYVKNLSESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESEDSANSAIEKLN 162
Query: 221 GILFHQKPLYVAIAQTKRER 240
G + K +YV K +R
Sbjct: 163 GSIVGDKQIYVGKFVKKSDR 182
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 142/255 (55%), Gaps = 23/255 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL S I L + FS FG I S + +G SKG+ FV Y + A A+E +
Sbjct: 194 YIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEAM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
G++ + L R Q+ A + + ++ E+IL NLYVKNI+DDV +
Sbjct: 252 ---NGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDK 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
EL+ FS CG I+SVK+MR ++GISKGFGFVCFSNP+EAN+A+ + NG FH+KPLY+AI
Sbjct: 309 ELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYIAI 368
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHP-------------TLYQRALQVYQAPGFR 280
AQ K+ER + L + YA Q GL ++ PV P ++Q L +YQ G R
Sbjct: 369 AQRKKERKTQLNLHYAPQQAGLDGSSTPVIPGGVPPYFYHSVASLMFQSGL-LYQPLGLR 427
Query: 281 HGGMIPNGFSSPPPS 295
G N F P S
Sbjct: 428 -SGWRANDFVPPARS 441
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 119/199 (59%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NLA +IDN LH +F K+G+I SSKVV+S+DGKSKGYGFVQ+ +ESA NAIEKL
Sbjct: 103 FVKNLAGSIDNAGLHDLFKKYGNILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEKLNG 162
Query: 117 ATVEGMELYAPSL--RAGRIQES--ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+TV ++Y + RI A + NLY+KNLD D+TE +
Sbjct: 163 STVGNKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEAL---------------- 206
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I S+ I + + G+SKGF FV + NPD+A +A+ +NG+ F K LYVA
Sbjct: 207 --LQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKKAMEAMNGLQFGSKYLYVA 264
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER L + ++
Sbjct: 265 RAQKKAEREQILHRQFEEK 283
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 36/202 (17%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFS---KFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
AT +P ++ + + + H +F+ +FG I S +V + S YG+V + +Q+
Sbjct: 5 ATVAAVPASIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQ 64
Query: 106 SALNAIE-----KLYAATVEGMELYA-PSLR-AGRIQESASFNNLYVKNLDDDVTEEILD 158
A+ AI+ L + M L+ P+ R +GR
Sbjct: 65 DAIRAIKLRNNSYLNGKVIRVMWLHRDPNARKSGR------------------------- 99
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
N++VKN+ +D L F + G I S K++ + G SKG+GFV F + AN AI
Sbjct: 100 GNVFVKNLAGSIDNAGLHDLFKKYGNILSSKVVMSEDGKSKGYGFVQFEWEESANNAIEK 159
Query: 219 LNGILFHQKPLYVAIAQTKRER 240
LNG K +YV K +R
Sbjct: 160 LNGSTVGNKQIYVGKFVRKGDR 181
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 106/260 (40%), Positives = 149/260 (57%), Gaps = 29/260 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD--GKSKGYGFVQYSTQESALNAIEKL 114
+ NL S I L + FS FG I S +V+S+D G SKG+ FV Y + A A+E +
Sbjct: 194 YIKNLDSDITEALLQEKFSSFGKIIS--LVISKDDNGLSKGFAFVNYENPDDARKAMEAM 251
Query: 115 YAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVD 171
G++ + +L R Q+ A + + ++ E+IL NLYVKNI+DDV
Sbjct: 252 -----NGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVT 306
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ EL+ FS CG I+SVK+MR ++GISKGFGFVCFSNP+EAN+A+ + NG +FH+KPLY+
Sbjct: 307 DKELRDLFSSCGTITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYI 366
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTNFPVHP-------------TLYQRALQVYQAPG 278
AIAQ K +R + L + YA Q GL ++ PV P ++Q L +YQ G
Sbjct: 367 AIAQRKMDRKTQLNLHYAPQQTGLDGSSTPVIPGGFPPYFYHSVASQMFQSGL-LYQPLG 425
Query: 279 FRHGGMIPNGFSSPPPSPLF 298
R G + S PP+ F
Sbjct: 426 LRSGWRAND---SVPPTRSF 442
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 119/199 (59%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NLA +IDN LH +F K+G+I SSKVV+S DGKSKGYGFVQ+ ++ESA NAIEKL
Sbjct: 103 FVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKLNG 162
Query: 117 ATVEGMELYAPSL--RAGRIQES--ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+TV ++Y + RI A + NLY+KNLD D+TE +
Sbjct: 163 STVGDKQIYVGKFVRKGDRILPGYDAKYTNLYIKNLDSDITEAL---------------- 206
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I S+ I + + G+SKGF FV + NPD+A +A+ +NG+ F K LYVA
Sbjct: 207 --LQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLYVA 264
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER L + ++
Sbjct: 265 RAQKKAEREQILHRQFEEK 283
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 28/198 (14%)
Query: 50 ATPTFIP---FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
AT +P + +L S + + L + F++F + S +V + KS YG+V + +Q+
Sbjct: 5 ATVAAVPASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQ 64
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNL---DDDVTEEILDKNLY 162
A+ RA +++ ++ N ++ + D + N++
Sbjct: 65 DAI---------------------RAMKLKNNSYLNGKVIRVMWSHPDPSARKSGRGNVF 103
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
VKN+ +D L F + G I S K++ + G SKG+GFV F + + AN AI LNG
Sbjct: 104 VKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGDGKSKGYGFVQFESEESANNAIEKLNGS 163
Query: 223 LFHQKPLYVAIAQTKRER 240
K +YV K +R
Sbjct: 164 TVGDKQIYVGKFVRKGDR 181
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 150/264 (56%), Gaps = 29/264 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL I L + FS+FG I S + ++G S+G+GF+ + + A A+E
Sbjct: 196 YVKNLDPEIGEEHLQEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALE---- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
T+ G +L + + R Q+ + ++ ++ E++L N+YVKNI+DDV +
Sbjct: 252 -TLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSNVYVKNIDDDVTDE 310
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
EL++ FSQ G I+S K+MR ++GI+KGFGFVCFSNPDEA RA+NTL G +FH KPLY+AI
Sbjct: 311 ELRERFSQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAI 370
Query: 234 AQTKRERTSYLRIMYAKQG---PGLASTNF------------PVHPTLYQRALQVYQAPG 278
AQ K +R L++ +A++ PG ++T F V P + R ++Q G
Sbjct: 371 AQRKEDRQMQLKLQFAQRLAGIPGPSTTIFPGGYPPYYYPAPGVVPPVASRPGLMFQPLG 430
Query: 279 FRHGGMIPNGFSSPP-----PSPL 297
R G PN ++SP PSPL
Sbjct: 431 MRP-GWRPNTYTSPARPGFQPSPL 453
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 115/196 (58%), Gaps = 16/196 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ +I++ L ++F KFG++ SSKV S DGKSKGYGFVQ+ ++ESA AIE L
Sbjct: 105 FVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNG 164
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
TV ++Y +V+ D + +I NLYVKN++ ++ E L
Sbjct: 165 FTVGDKQIYV---------------GKFVRKSDRVLANPDIKYTNLYVKNLDPEIGEEHL 209
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS+ G ISS+ I R G+S+GFGF+ F N D+A RA+ TLNG K +Y+A AQ
Sbjct: 210 QEKFSEFGKISSMIISRDENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQ 269
Query: 236 TKRERTSYLRIMYAKQ 251
K ER LR Y ++
Sbjct: 270 KKTEREEVLRRHYEEK 285
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 20/202 (9%)
Query: 40 IASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGF 98
+A++ +A A+P + + +L + + +L FS F + S ++ S G+S YG+
Sbjct: 1 MAAVSQPTAHASPASL-YVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGY 59
Query: 99 VQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD 158
V + + + A NAIE + + + G RA R+ S D D + +
Sbjct: 60 VNFISPQDATNAIEVMNHSMLNG--------RAIRVMWS---------RRDADARKSGIG 102
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
N++VKN++D ++ + L++ F + G + S K+ ++ G SKG+GFV F + + AN AI +
Sbjct: 103 -NVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAIES 161
Query: 219 LNGILFHQKPLYVAIAQTKRER 240
LNG K +YV K +R
Sbjct: 162 LNGFTVGDKQIYVGKFVRKSDR 183
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 308 NNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKLK 348
N++ + +Q + +SMLA + PD++K ILG+ LYPLV+K K
Sbjct: 537 NSVGDVSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRK 577
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 149/258 (57%), Gaps = 23/258 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + L + F +FG I S + ++G S+G+GFV + + E A A+E L
Sbjct: 194 YIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEAL-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
G++L + L R Q+ A L + ++ E+IL N+YVKNI+D+V++
Sbjct: 252 ---NGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+++FS CG I+S K+MR +GISKGFGFVCFS PDEA++A+NT +G +FH+KPLYVAI
Sbjct: 309 DLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAI 368
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPV----HPTLY---------QRALQVYQAPGFR 280
AQ K +R + L++ YA++ GLA + PV +P LY R +YQ G R
Sbjct: 369 AQRKEDRQAQLQLHYAQRMAGLAGPSTPVIPGGYPPLYYTAPPGVIPPRQGLMYQPLGLR 428
Query: 281 HGGMIPNGFSSPPPSPLF 298
G N PP P F
Sbjct: 429 TGWRANNLI--PPTRPAF 444
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 14/195 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ +IDN +L +F KFG+I S KVVV++DGKSKGYGFVQ+ ++E A AIEKL
Sbjct: 103 FVKNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNG 162
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G ++YA G+ + + N D T NLY+KN++ DV E L+
Sbjct: 163 FIIDGKQIYA-----GKFVRK---TDRVLPNPDAKYT------NLYIKNLDPDVTEEALR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G I+S+ I + G+S+GFGFV F +P++A RA+ LNG+ K LYVA AQ
Sbjct: 209 EKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQK 268
Query: 237 KRERTSYLRIMYAKQ 251
K ER LR + ++
Sbjct: 269 KAEREQLLRRQFEEK 283
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 25/200 (12%)
Query: 49 MATPTFIP------FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQY 101
MA P +P + +L I + L FS+F + S ++ S G+S YG+V +
Sbjct: 1 MAVPPTVPAAPASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNF 60
Query: 102 STQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNL 161
+ + A +AIE + G + R+ S + D D + N+
Sbjct: 61 ISPQDASHAIEAKNHTMLHGKVI--------RVMWS---------HRDPDARRSGIG-NV 102
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+VKN++D +D + L+ F + G I S K++ T G SKG+GFV F + + AN AI LNG
Sbjct: 103 FVKNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNG 162
Query: 222 ILFHQKPLYVAIAQTKRERT 241
+ K +Y K +R
Sbjct: 163 FIIDGKQIYAGKFVRKTDRV 182
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 305 AAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKLK 348
AA+N++ G+Q + +SMLA ASP+++K ILG+ LYPLV+K K
Sbjct: 526 AASNSVGTGSQGSEMLSSMLAAASPEQQKQILGEHLYPLVQKQK 569
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 153/263 (58%), Gaps = 25/263 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + L + F +FG I S + ++G S+G+GFV + + E A A+E L
Sbjct: 214 YIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEAL-- 271
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
G++L + L R Q+ A L + ++ E+IL N+YVKNI+D+V++
Sbjct: 272 ---NGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKNIDDNVNDD 328
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+++FS CG I+S K+MR +GISKGFGFVCFS PDEA++A+NT +G +FH+KPLYVAI
Sbjct: 329 DLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAI 388
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPV----HPTLY---------QRALQVYQAPGFR 280
AQ K +R + L++ YA++ GLA + PV +P LY R +YQ G R
Sbjct: 389 AQRKEDRQAQLQLHYAQRMAGLAGPSTPVIPGGYPPLYYTAPPGVIPPRQGLMYQPLGLR 448
Query: 281 HG----GMIPNGFSSPPPSPLFL 299
G +IP + PSP+ L
Sbjct: 449 TGWRANNLIPPTRPAFQPSPIPL 471
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 119/194 (61%), Gaps = 14/194 (7%)
Query: 58 TVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA 117
+NL+ +IDN +L +F KFG+I S KVVV++DGKSKGYGFVQ+ ++E A AIEKL
Sbjct: 124 CLNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGF 183
Query: 118 TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQ 177
++G ++YA G+ + + N D T NLY+KN++ DV E L++
Sbjct: 184 IIDGKQIYA-----GKFVRK---TDRVLPNPDAKYT------NLYIKNLDPDVTEEALRE 229
Query: 178 YFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
F + G I+S+ I + G+S+GFGFV F +P++A RA+ LNG+ K LYVA AQ K
Sbjct: 230 KFFEFGKIASLVISKDENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKK 289
Query: 238 RERTSYLRIMYAKQ 251
ER LR + ++
Sbjct: 290 AEREQLLRRQFEEK 303
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 11/203 (5%)
Query: 49 MATPTFIP------FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQY 101
MA P +P + +L I + L FS+F + S ++ S G+S YG+V +
Sbjct: 1 MAVPPTVPAAPASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNF 60
Query: 102 STQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNL 161
+ + A +AIE + G + + N++VK VT I+D L
Sbjct: 61 ISPQDASHAIEAKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKVYLFAVT-SIIDAEL 119
Query: 162 Y---VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
Y N++D +D + L+ F + G I S K++ T G SKG+GFV F + + AN AI
Sbjct: 120 YFLVCLNLSDSIDNVRLQAMFQKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEK 179
Query: 219 LNGILFHQKPLYVAIAQTKRERT 241
LNG + K +Y K +R
Sbjct: 180 LNGFIIDGKQIYAGKFVRKTDRV 202
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 145/263 (55%), Gaps = 30/263 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL I L + FS FG I S V +G SKG+GFV + E A A+E
Sbjct: 192 YMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAME---- 247
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
T+ G++L + L R Q+ A + + ++ E++L N+YVKNI+D+V +
Sbjct: 248 -TMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDE 306
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ +FS CG I+S KIMR ++GISKGFGFVCFS P+EAN+A+N+ +G +FH KPLYV++
Sbjct: 307 GLRDHFSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSL 366
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLY---------------QRALQVYQA-- 276
AQ K +R + L++ YA+Q GLA + + P Y RA VYQ
Sbjct: 367 AQRKEDRQAQLQLQYAQQIAGLAGPSTAIVPGGYPPFYYTATGVVSHAPPRAGLVYQPMA 426
Query: 277 --PGFRHGGMIPNGFS---SPPP 294
PG+R G P S SP P
Sbjct: 427 LRPGWRANGSAPPARSFQQSPTP 449
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 115/195 (58%), Gaps = 14/195 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NLA +IDN L +F KFG+I SSKVV+S+DGKSKGYGFVQ+ T+ESA AIE+L
Sbjct: 101 FVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V ++Y + S+ + Y NLY+KN++ D+ E L+
Sbjct: 161 YLVGDKQIYVGKFVKKSDRISSGPDTRYT--------------NLYMKNLDLDISETLLR 206
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I S+ + + + G+SKGFGFV F NP++A RA+ T+NG+ K LYVA AQ
Sbjct: 207 EKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQK 266
Query: 237 KRERTSYLRIMYAKQ 251
K ER L + ++
Sbjct: 267 KAEREQILHQQFEEK 281
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 20/194 (10%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESAL 108
ATP + + +L + + +LH FS F + S ++ S GKS YG+V + + A+
Sbjct: 7 ATPASL-YVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAI 65
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
AIE +T+ G +A R+ S D D + + N++VKN+ +
Sbjct: 66 RAIEVKNHSTLNG--------KAIRVMWS---------RRDPDARKSCIG-NVFVKNLAE 107
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+D L+ F + G I S K++ + G SKG+GFV F + AN AI LNG L K
Sbjct: 108 SIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQ 167
Query: 229 LYVAIAQTKRERTS 242
+YV K +R S
Sbjct: 168 IYVGKFVKKSDRIS 181
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 321 NSMLAVASPDERKDILGQGLYPLVKKLKVNF 351
+SMLA A+P+++K+ILG+ LY LV+K+K N
Sbjct: 537 HSMLANATPEQQKEILGEHLYMLVQKIKPNL 567
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 155/299 (51%), Gaps = 16/299 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KVV + GKSKG+GFV + E A A++++
Sbjct: 239 YIKNFGEDMDDERLKDLFGKFGPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNG 298
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 299 KELNGKQIYVG--RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 356
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 357 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 415
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRA------LQVYQAPGFRHGGMIPNG 288
K ER ++L Y ++ +AS +P + YQ A + R P+
Sbjct: 416 KEERQAHLTNQYMQR---MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQ 472
Query: 289 FSSPPPSPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKL 347
+ PSP + + + G + A SMLA A P E+K +LG+ L+PL++ +
Sbjct: 473 IAQLRPSPRWTAQGARPQPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAM 529
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 147 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 205
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 206 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 253
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK++ G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 254 DLFGKFGPALSVKVVTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQK 313
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 314 KVERQTELKRKFEQ 327
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 145 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 203
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 204 NGMLLNDRKVFVGRFKSRKEREAEL 228
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 162/324 (50%), Gaps = 42/324 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L ++F FG I S+ V+ DGKSK +GFV + E A+ A+E L+
Sbjct: 195 FVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLHG 254
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T + ELY S + + A + D TE+ NLY+KN++D +D+ +LK
Sbjct: 255 TTFQDKELYV-SRAQKKNEREAELKAKFEHERKD--TEDKSPTNLYLKNLDDGIDDEKLK 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS G ++S K+MR G SKG GFV FS D A RA+ +NG + KPLYVA+AQ
Sbjct: 312 DMFSAFGNVTSCKVMRDPLGHSKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAMAQK 371
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHP--------TLYQR-ALQVYQAP-GFR----HG 282
K ER + L +A +GP NFP P LY R A V Q P GF +
Sbjct: 372 KEERKAKLEAQFASRGP----VNFPPPPLYSAVGQQLLYSRPAPMVPQQPAGFAMVRPNV 427
Query: 283 GMIPNGFSSPP---------PSPLFLTRAGQAAANNLTNGNQRAAANNSMLAV------- 326
G +P F PP P F+ R +N A NNS LAV
Sbjct: 428 GQMPGFF--PPQRQQGHARVPFQQFMQRESTFHG---SNSRTPAYGNNSFLAVLASHLAS 482
Query: 327 ASPDERKDILGQGLYPLVKKLKVN 350
A+P++++ +LG+ LYPLV ++ N
Sbjct: 483 ATPEQQRIMLGEQLYPLVDCIEHN 506
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 20/197 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH +FS +G I S K+ + SKG+GFVQ+ T+++A AIEK+
Sbjct: 106 FVKNLDKSIDNKALHDLFSPYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKING 165
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
T+ +L+ R R ++ FNN++VKNL + T+E +
Sbjct: 166 TTLHDKQLFVGPFVRRQERDPPASKFNNVFVKNLSEITTDE------------------D 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L++ F G ISS +M+ G SK FGFV F NP++A +A+ L+G F K LYV+ A
Sbjct: 208 LQKLFGVFGPISSAVVMKEVDGKSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRA 267
Query: 235 QTKRERTSYLRIMYAKQ 251
Q K ER + L+ + +
Sbjct: 268 QKKNEREAELKAKFEHE 284
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAAT 118
+L +++ ++ IF + G++ S ++ K S GY +V Y+ + A AIE+L
Sbjct: 21 DLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASRAIEELNFMP 80
Query: 119 VEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQ 177
V G + S R I++S S NL+VKN++ +D L
Sbjct: 81 VNGKPVRIMFSYRDPSIRKSGS-------------------GNLFVKNLDKSIDNKALHD 121
Query: 178 YFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
FS G I S KI +SKG GFV F D A+ AI +NG H K L+V +
Sbjct: 122 LFSPYGKILSCKIALDVSNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDKQLFVGPFVRR 181
Query: 238 RER 240
+ER
Sbjct: 182 QER 184
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
LYV +++ V+E ++ F Q G + SV++ R T R + G+ +V ++N +A+RAI
Sbjct: 17 LYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSL--GYAYVNYNNTQDASRAIE 74
Query: 218 TLNGILFHQKPLYVAIA 234
LN + + KP+ + +
Sbjct: 75 ELNFMPVNGKPVRIMFS 91
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 152/288 (52%), Gaps = 27/288 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + L + FS FG I S + +G SKG+GFV Y + A A+E +
Sbjct: 194 YMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
G +L + L R Q+ A + ++ E+IL N+YVKNI+D V +
Sbjct: 252 ---NGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
EL+ +FS CG I+S KIMR ++GISKGFGFVCFS P+EAN+A+NT +G ++H KPLYVA+
Sbjct: 309 ELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVAL 368
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLY---------------QRALQVYQAPG 278
AQ K +R + L++ YA+Q L+ + + P+ Y RA +YQ
Sbjct: 369 AQRKEDRKAQLQLQYAQQLARLSGPSTAIIPSGYPPYYYAASGVISHVPPRAGLMYQHLA 428
Query: 279 FRHGGMIPNGFSSPPPSPLFLTRAGQAAANNLTNGNQ-RAAANNSMLA 325
R G NGF+ PP+ F A +NN Q R N + +A
Sbjct: 429 LR-PGWGANGFA--PPARSFQQSPVPAVSNNTRQHRQNRGKLNGNSIA 473
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/199 (44%), Positives = 113/199 (56%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L IF K+G+I SSKVV S+DGKSKGYGFVQ+ ++ES+ AIEKL
Sbjct: 103 FVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNG 162
Query: 117 ATVEGMELYAPSL--RAGRI--QESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
TV ELY ++ RI A + NLY+KNLD D V E
Sbjct: 163 YTVADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLD------------------VSE 204
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I S+ I + N G+SKGFGFV + NPD+A +A+ +NG K LYVA
Sbjct: 205 ATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVA 264
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER L + ++
Sbjct: 265 RAQKKAEREQILHHQFEEK 283
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 19/197 (9%)
Query: 45 VHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYST 103
VH ++A + +L + + L FS+F + S +V S GKS YG++ + +
Sbjct: 3 VHPSVAAAPASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVS 62
Query: 104 QESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYV 163
+ A+ AIE +T+ G +A R+ S D D + + NL+V
Sbjct: 63 PQDAIRAIELKNNSTLNG--------KAMRVMWS---------RRDPDARKSAIG-NLFV 104
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN+ + +D L+ F + G I S K++ + G SKG+GFV F + + + AI LNG
Sbjct: 105 KNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYT 164
Query: 224 FHQKPLYVAIAQTKRER 240
K LYV K +R
Sbjct: 165 VADKELYVGKFVKKSDR 181
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 155/299 (51%), Gaps = 16/299 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 169 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 228
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 229 KELNGKQIYVG--RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 286
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 287 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 345
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRA------LQVYQAPGFRHGGMIPNG 288
K ER ++L Y ++ +AS +P + YQ A + R P+
Sbjct: 346 KEERQAHLTNQYMQR---MASVRAVPNPVINPYQPAPPSGYFIAAIPQTQNRAAYYPPSQ 402
Query: 289 FSSPPPSPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKL 347
+ PSP + + + G + A SMLA A P E+K +LG+ L+PL++ +
Sbjct: 403 IAQLRPSPRWTAQGARPHPAVHVQGQEPLTA--SMLASAPPQEQKQMLGERLFPLIQAM 459
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 77 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 135
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 136 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 183
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 184 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 243
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 244 KVERQTELK 252
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L++ FS G I S +V +S GY +V + A A++ + ++G +
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV---- 57
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
RI S +L + N+++KN++ +D L FS G I S
Sbjct: 58 ----RIMWSQRDPSLRKSGVG----------NIFIKNLDKSIDNKALYDTFSAFGNILSC 103
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
K++ G SKG+GFV F + A RAI +NG+L + + ++V ++++ER + L
Sbjct: 104 KVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 158
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 132/216 (61%), Gaps = 12/216 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD--GKSKGYGFVQYSTQESALNAIEKL 114
+ NL + L + FS FG I S +V+++D G SKG+GFV Y + A A+E +
Sbjct: 194 YMKNLDLDVSEATLQEKFSSFGKIVS--LVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAM 251
Query: 115 YAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVD 171
G +L + L R Q+ A + ++ E+IL N+YVKNI+D V
Sbjct: 252 -----NGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVS 306
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ EL+ +FS CGII+S KIMR ++GISKGFGFVCFS P+EAN+A+NT +G +FH KPLYV
Sbjct: 307 DEELRDHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLY 267
A+AQ K +R + L++ YA+Q GL+ + + P Y
Sbjct: 367 ALAQRKEDRKAQLQLQYAQQVAGLSGPSTAIIPGGY 402
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/199 (43%), Positives = 115/199 (57%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +F K+G+I SSKVV+S+DGKSKGYGFVQ+ ++ES+ AIEKL
Sbjct: 103 FVKNLPESIDNAGLQDMFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLNG 162
Query: 117 ATVEGMELYAPSL--RAGRI--QESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+TV +LY ++ RI A + NLY+KNLD D V E
Sbjct: 163 STVGDKQLYVGKFVKKSDRILPGPDARYTNLYMKNLDLD------------------VSE 204
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I S+ I + N G+SKGFGFV + NPD+A RA+ +NG K LYVA
Sbjct: 205 ATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVA 264
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER L + ++
Sbjct: 265 RAQKKAEREQILHHQFEEK 283
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQE 105
S A P + + +L + + L FS F + S +V S GKS YG+V + + +
Sbjct: 6 SVAAAPASL-YVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQ 64
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A+ AIE +T+ G +A R+ S D D + + NL+VKN
Sbjct: 65 DAIRAIELKNNSTLNG--------KAMRVMWS---------RRDPDARKNAIG-NLFVKN 106
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
+ + +D L+ F + G I S K++ + G SKG+GFV F + + +N AI LNG
Sbjct: 107 LPESIDNAGLQDMFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVG 166
Query: 226 QKPLYVAIAQTKRER 240
K LYV K +R
Sbjct: 167 DKQLYVGKFVKKSDR 181
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 118/320 (36%), Gaps = 77/320 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + +L FS G I S+K++ G SKG+GFV +ST E A A+ +
Sbjct: 297 YVKNIDDHVSDEELRDHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHG 356
Query: 117 ATVEGMELYAP--SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
G LY + R + V L T I
Sbjct: 357 FMFHGKPLYVALAQRKEDRKAQLQLQYAQQVAGLSGPSTAIIPGG--------------Y 402
Query: 175 LKQYFSQCGIISSVK----IMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
Y++ G+IS V +M + + G+G F+ P + F Q P+
Sbjct: 403 PPYYYAATGVISHVPPRAGLMYQHLPMRPGWGANGFALPARS-----------FQQSPVP 451
Query: 231 VAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLY-QRALQVYQAPGFRHGGMIPNGF 289
T++ R + R+ G +A N H Y +A Q+ Q
Sbjct: 452 AVSNNTRQHRQNRGRL----NGNPIAQGN--THSVTYLPQAQQISQ-------------- 491
Query: 290 SSPPPSPLFLTRAGQAAANNLTNGNQRAAAN---------------------NSMLAVAS 328
P S R GQA L +G QR +SMLA A+
Sbjct: 492 --PVISSSTQQRTGQA--KYLPSGRQRDMEKGSGSSSSGSNSGRGSQGSEMLHSMLAGAA 547
Query: 329 PDERKDILGQGLYPLVKKLK 348
P+++K+ILG+ LY LV KLK
Sbjct: 548 PEQQKEILGEHLYMLVHKLK 567
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 113/350 (32%), Positives = 176/350 (50%), Gaps = 66/350 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + ++++ FS FG I + ++ ++ KSKG+GFV + E+A A+E
Sbjct: 218 FVKNLDPEMAEEEINEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVE---- 273
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
T+ +L + ++ GR Q+ A + + ++ E+ NLYVKN++D +D+
Sbjct: 274 -TMNNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDE 332
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
LKQ FS+ G I+S K+MR +GISKGFGFVCF++P+EA+RA NG++ + KP+YVA+
Sbjct: 333 TLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAM 392
Query: 234 AQTKRERTSYLRIMYAKQGPGL--------ASTNFPVH--------PTLYQRALQVYQA- 276
AQ K R + L+ YA++ GL A+ PV+ P + QR +YQ
Sbjct: 393 AQRKEIRQAQLQQQYAQRMSGLMPPPGAQVAAAYPPVYYAAPPALLPQVPQRQGLMYQPV 452
Query: 277 --PGFRHGGMIPNGFSSPPPSPLFL----------------------------------- 299
PG+R G + P G S P P +
Sbjct: 453 MRPGWRTGPLAPPGRPSLQPLPPYALVRNKKGVPLSISSYIVGVMQQRPRQAMKYVNNGR 512
Query: 300 TRAGQAAANN--LTNGNQRAAANN--SMLAVASPDERKDILGQGLYPLVK 345
R G AA + GN N+ SM++ ASP ++K +LG+ L+PLV+
Sbjct: 513 PRDGAAAGGPVLMVPGNMPMGGNDVLSMMSAASPQQQKQLLGERLFPLVR 562
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 106/199 (53%), Gaps = 23/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F FG I S K+ QDG+SKGYGFV + T E+A AIEK+
Sbjct: 128 FIKNLDESIDNKALHDTFIAFGPILSCKIA-HQDGRSKGYGFVHFETDEAANLAIEKVNG 186
Query: 117 ATVEGMELYAPSL--RAGRIQESAS--FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ G +++ R+ R+ + F N++VKNLD ++ EE
Sbjct: 187 MQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEE----------------- 229
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
E+ ++FS G+I++V IM+ SKGFGFV F +P+ A A+ T+N + +YV
Sbjct: 230 -EINEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVG 288
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER LR + ++
Sbjct: 289 RAQKKAEREQILRRQFEEK 307
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 24/179 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ +L T+ +L IFS+ G + S V V +D +S GYG+V YS+ A+ A+E
Sbjct: 40 YVGDLDETVAETQLFTIFSQMGLVTS--VRVCRDAVTRRSLGYGYVNYSSGADAVRAMEA 97
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + G + RI S D T + N+++KN+++ +D
Sbjct: 98 LNYTPINGKTI--------RIMWSHR----------DPSTRKSGVGNIFIKNLDESIDNK 139
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L F G I S KI + G SKG+GFV F + AN AI +NG+ K ++VA
Sbjct: 140 ALHDTFIAFGPILSCKIAHQD-GRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVA 197
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++++ V E +L FSQ G+++SV++ R T R + G+G+V +S+ +A RA+
Sbjct: 38 SLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSL--GYGYVNYSSGADAVRAM 95
Query: 217 NTLN 220
LN
Sbjct: 96 EALN 99
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 136/233 (58%), Gaps = 13/233 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL ++F++FG+I+S+ V+ +GKSKG+GFV Y E A A+ ++
Sbjct: 184 YVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAMHG 243
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYV-KNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G LYA RA R +E L + K + ++ + + NLYVKN++D++D+ L
Sbjct: 244 KEIGGRSLYAS--RAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERL 301
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ FS+ G ISS K+M + SKGFGFVCF+NP++A +A+ NG + + KPLYVAIAQ
Sbjct: 302 KEIFSKYGPISSAKVMTDSNNRSKGFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQ 361
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFP-----VHPTL-----YQRALQVYQAPG 278
K +R + L + + L ST P +HPT Y + ++Y APG
Sbjct: 362 RKEDRRAELAAKHTQHLNALRSTAPPMIPALMHPTQNYFHPYPQQARLYSAPG 414
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 107/199 (53%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NLA TI+ +L+ FS FG I S K+ + ++G SKGYGFV + +E A AI+K+
Sbjct: 93 FIKNLAKTIEQKELYDTFSLFGRILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNN 152
Query: 117 ATVEGMELYAPSL--RAGRIQES--ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
++ G +Y + R+ R ++ FNN+YVKN + +E
Sbjct: 153 MSICGKVVYVGNFIPRSDRKSQNRKQKFNNIYVKNFPPETDDE----------------- 195
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F++ G I S +M+ + G SKGFGFVC+ NP+ A A+ ++G + LY +
Sbjct: 196 -KLKEMFTEFGEIKSACVMKDSEGKSKGFGFVCYLNPEHAEAAVAAMHGKEIGGRSLYAS 254
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER L++ KQ
Sbjct: 255 RAQRKEERQEELKLRLEKQ 273
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L I++ +L FS+ G + + V V S+ KS GYG+V + + A A+E+
Sbjct: 5 YVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSR--KSLGYGYVNFEDPKDAERALEQ 62
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ V G R RI S +L L N+++KN+ +++
Sbjct: 63 MNYEVVMG--------RPIRIMWSQRDPSLRKSGLG----------NIFIKNLAKTIEQK 104
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
EL FS G I S KI G SKG+GFV F N + A RAI +N + K +YV
Sbjct: 105 ELYDTFSLFGRILSCKIAMDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGN 164
Query: 234 AQTKRERTSYLR 245
+ +R S R
Sbjct: 165 FIPRSDRKSQNR 176
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 18/102 (17%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAINT 218
LYV +++ D+++ +L+ FS+ G ++ + R T+R S G+G+V F +P +A RA+
Sbjct: 4 LYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRK-SLGYGYVNFEDPKDAERALEQ 62
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
+N + +P +RIM++++ P L +
Sbjct: 63 MNYEVVMGRP---------------IRIMWSQRDPSLRKSGL 89
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 134/224 (59%), Gaps = 12/224 (5%)
Query: 74 FSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133
FS+FG + S K++ DG SKG+GFV + + +SA A E + G+ L + SL R
Sbjct: 300 FSQFGPLISVKIMKRDDGTSKGFGFVSFKSPDSAKKAKEAM-----NGIPLGSKSLYVAR 354
Query: 134 IQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIELKQYFSQCGIISSVK 189
Q+ A Y++ L ++ EIL K N+Y+KNI+D VD+ L++ F + G I+SVK
Sbjct: 355 AQKKAE-RKQYLQLLHEEKRNEILTKSNGSNVYIKNISDRVDDETLRERFDEFGNITSVK 413
Query: 190 IMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
IMR ++GISKGFGFVC++ PDEA A++++ G++F+ KPLYVAIAQ K +R + L +A
Sbjct: 414 IMRDDKGISKGFGFVCYNTPDEAKCAVSSMRGVMFYDKPLYVAIAQRKEDRKARLEQRFA 473
Query: 250 KQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPP 293
+ + + + PV PT Y + + F G GF PP
Sbjct: 474 ELATMVGAAS-PVIPTGYPHVYFAHPSTHFPQGPSR-QGFMYPP 515
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/196 (46%), Positives = 120/196 (61%), Gaps = 17/196 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L ++FSKFGDI S KV + DG S+GYGFVQ++ QESA AIE L
Sbjct: 193 FVKNLNDHIDNVILQELFSKFGDILSCKVARNDDGTSRGYGFVQFAAQESADIAIENLNN 252
Query: 117 ATVEGMELYAPSLRAGRIQESA-SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ EG +L+ A I++S S NN DD T NLY+KN++DD+ E +
Sbjct: 253 SHFEGRQLHV----AHFIKKSERSANN------DDKYT------NLYMKNLDDDMTEELI 296
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K FSQ G + SVKIM+ + G SKGFGFV F +PD A +A +NGI K LYVA AQ
Sbjct: 297 KLKFSQFGPLISVKIMKRDDGTSKGFGFVSFKSPDSAKKAKEAMNGIPLGSKSLYVARAQ 356
Query: 236 TKRERTSYLRIMYAKQ 251
K ER YL++++ ++
Sbjct: 357 KKAERKQYLQLLHEEK 372
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
Query: 70 LHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L FSK G + S +V + S YG+V Y +Q A+ A+EK+ + + +
Sbjct: 118 LFDAFSKVGAVTSVRVCRDTATSSSLRYGYVNYFSQADAMTALEKMNHSLILDKPI---- 173
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
R+ S N D D + N++VKN+ND +D + L++ FS+ G I S
Sbjct: 174 ----RVMWS---------NRDPDARRSGVG-NVFVKNLNDHIDNVILQELFSKFGDILSC 219
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
K+ R + G S+G+GFV F+ + A+ AI LN F + L+VA K ER++
Sbjct: 220 KVARNDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSERSA 273
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N++ +D+ L + F +FG+I S K++ G SKG+GFV Y+T + A A+ +
Sbjct: 386 YIKNISDRVDDETLRERFDEFGNITSVKIMRDDKGISKGFGFVCYNTPDEAKCAVSSMRG 445
Query: 117 ATVEGMELY 125
LY
Sbjct: 446 VMFYDKPLY 454
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 126 APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGII 185
A + AGR QE A LYV ++++D E L FS+ G +
Sbjct: 69 AEEMMAGRDQEPAPVPASEEAPPAAAAGTNATVPALYVGDLHEDAQEEHLFDAFSKVGAV 128
Query: 186 SSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+SV++ R T S +G+V + + +A A+ +N L KP+ V
Sbjct: 129 TSVRVCRDTATSSSLRYGYVNYFSQADAMTALEKMNHSLILDKPIRV 175
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 141/240 (58%), Gaps = 18/240 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL I + FS++G + S K++ DG SKG+GFV + ESA A E
Sbjct: 219 YMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKE---- 274
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++ GM L + +L R Q+ A Y++ L ++ EI+ K N+Y+KNIND+V +
Sbjct: 275 -SMNGMLLGSKTLYVARAQKKAE-RKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGD 332
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F++ G I+S KIMR +GISKGFGFVC++ P+EA A++ + G++F+ KPLYVA
Sbjct: 333 DALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVA 392
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQR------ALQVYQAPGFRHGGMIP 286
IAQ K ER + L +A+ + +T+ PV PT Y + + + Q+PG R G M P
Sbjct: 393 IAQRKEERRAKLEQRFAELATMVGATS-PVIPTGYPQFYFAHPSTHLPQSPG-RQGFMYP 450
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 121/196 (61%), Gaps = 17/196 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +DN L ++F KFGDI S KV ++DG S+GYGFVQ++ QESA +I+ L
Sbjct: 129 FVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNN 188
Query: 117 ATVEGMELYAPSLRAGRIQESA-SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G +L+ + I++S S NN DD T NLY+KN++DD+ E +
Sbjct: 189 SHFCGRQLHVATF----IKKSERSTNN------DDKYT------NLYMKNLDDDITEELI 232
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K FSQ G++ SVKIM+ + G SKGFGFV F NP+ A RA ++NG+L K LYVA AQ
Sbjct: 233 KLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQ 292
Query: 236 TKRERTSYLRIMYAKQ 251
K ER YL+ ++ ++
Sbjct: 293 KKAERKQYLQRLHEEK 308
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ L ++F K G + S +V S YG+V Y +Q A A+EKL
Sbjct: 41 YVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLN 100
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ + L P R+ S N D D + N++VKN+ND VD + L
Sbjct: 101 HSLI----LDKPI----RVMWS---------NRDPDARRSGVG-NVFVKNLNDLVDNVSL 142
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F + G I S K+ + G S+G+GFV F+ + A+ +I LN F + L+VA
Sbjct: 143 QELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFI 202
Query: 236 TKRERTS 242
K ER++
Sbjct: 203 KKSERST 209
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 158/330 (47%), Gaps = 45/330 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ ++ +I ++ G I S KV+ +GKSKG+GFV + T E A A+ L
Sbjct: 197 YVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNG 256
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G L+A RA + E A+ ++ + NLY+KN++D +D+ L+
Sbjct: 257 KEIGGRRLWA--GRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLR 314
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G ISS K+M+ ++G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 315 EEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQR 374
Query: 237 KRERTSYL------RI----MYAKQGPGLASTNFPVHPTL---------YQRALQVYQAP 277
+ ER + L RI M+ Q P V P R V
Sbjct: 375 REERKAQLAAQHMHRISGLRMHQGQRPFFTPQMPQVRPRWGMPPQQQQQQMRPTGVQNMG 434
Query: 278 GFRHGGMIPNGFSSPPPSPLFLTRAG-----------------QAAANNLTNGNQ----- 315
G GM G + P P+ R G A + G Q
Sbjct: 435 G--QAGMPQGGPAGMPRMPVQQARMGGVPPQRQPYKFSQTVRNPPPAGQMPEGGQGIPGG 492
Query: 316 RAAANNSMLAVASPDERKDILGQGLYPLVK 345
+ N S+LA A+P E+K +LG+ L+PL++
Sbjct: 493 QEPLNPSVLAAATPQEQKQMLGERLFPLIQ 522
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 105/195 (53%), Gaps = 12/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S K+ + G KGYGFV + T+++AL AI
Sbjct: 104 FIKNLDKSIDNKSLYDTFSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAI----- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A V+GM L + GR + ++ T+ N+YVKN DD+D+ ++K
Sbjct: 159 ARVDGMLLNDKKVFVGRWMSKK-------ERIEKMGTQPKKFTNVYVKNFGDDMDDEQMK 211
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ ++ G I S+K+M G SKGFGFV F P+EA A+N LNG + L+ A+
Sbjct: 212 EICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKK 271
Query: 237 KRERTSYLRIMYAKQ 251
+ ER + ++ K+
Sbjct: 272 RAERAAEVKAEIEKK 286
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 35/197 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +LA + L++ FS G + S +V +V++ +S GY +V + A A++
Sbjct: 16 YVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTR--RSLGYAYVNFQQPGHAEKALDT 73
Query: 114 LYAATVEG------MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
+ ++G + PSLR + N+++KNLD + I +K+LY
Sbjct: 74 MNFDPIKGRPCRIMWQQRDPSLR------KSGVGNIFIKNLD----KSIDNKSLY----- 118
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
FS G I S KI + G KG+GFV F D A AI ++G+L + K
Sbjct: 119 ---------DTFSAFGNILSCKIAQDELGNPKGYGFVHFETEDAALEAIARVDGMLLNDK 169
Query: 228 PLYVAIAQTKRERTSYL 244
++V +K+ER +
Sbjct: 170 KVFVGRWMSKKERIEKM 186
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 141/240 (58%), Gaps = 18/240 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL I + FS++G + S K++ DG SKG+GFV + ESA A E
Sbjct: 219 YMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKE---- 274
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++ GM L + +L R Q+ A Y++ L ++ EI+ K N+Y+KNIND+V +
Sbjct: 275 -SMNGMLLGSKTLYVARAQKKAE-RKQYLQCLHEEKRNEIITKSNGSNVYIKNINDEVGD 332
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F++ G I+S KIMR +GISKGFGFVC++ P+EA A++ + G++F+ KPLYVA
Sbjct: 333 DALRERFNEFGNITSAKIMRDEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVA 392
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQR------ALQVYQAPGFRHGGMIP 286
IAQ K ER + L +A+ + +T+ PV PT Y + + + Q+PG R G M P
Sbjct: 393 IAQRKEERRAKLEQRFAELATMVGATS-PVIPTGYPQFYFAHPSTHLPQSPG-RQGFMYP 450
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 121/196 (61%), Gaps = 17/196 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +DN L ++F KFGDI S KV ++DG S+GYGFVQ++ QESA +I+ L
Sbjct: 129 FVKNLNDLVDNVSLQELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNN 188
Query: 117 ATVEGMELYAPSLRAGRIQESA-SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G +L+ + I++S S NN DD T NLY+KN++DD+ E +
Sbjct: 189 SHFCGRQLHVATF----IKKSERSTNN------DDKYT------NLYMKNLDDDITEELI 232
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K FSQ G++ SVKIM+ + G SKGFGFV F NP+ A RA ++NG+L K LYVA AQ
Sbjct: 233 KLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQ 292
Query: 236 TKRERTSYLRIMYAKQ 251
K ER YL+ ++ ++
Sbjct: 293 KKAERKQYLQCLHEEK 308
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ L ++F K G + S +V S YG+V Y +Q A A+EKL
Sbjct: 41 YVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKLN 100
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ + L P R+ S N D D + N++VKN+ND VD + L
Sbjct: 101 HSLI----LDKPI----RVMWS---------NRDPDARRSGVG-NVFVKNLNDLVDNVSL 142
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F + G I S K+ + G S+G+GFV F+ + A+ +I LN F + L+VA
Sbjct: 143 QELFCKFGDILSCKVAKNEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFI 202
Query: 236 TKRERTS 242
K ER++
Sbjct: 203 KKSERST 209
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 124/210 (59%), Gaps = 16/210 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNG 161
Query: 117 ATVEGMELYAPSL-----RAGRIQESAS-FNNLYVKNLD-----DDVTEEILDK----NL 161
+ G ++Y R + E A F N+YVKN + + + E L++ NL
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFELKRKFEQLKIERLNRYQGVNL 221
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
YVKN++D +D+ L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG
Sbjct: 222 YVKNLDDTIDDERLRKEFTPFGTITSAKVM-MEEGRSKGFGFVCFSQPEEATKAVTEMNG 280
Query: 222 ILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
+ KPLYVA+AQ K +R ++L Y ++
Sbjct: 281 RIVGSKPLYVALAQRKEDRKAHLASQYMQR 310
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV F + AN++I+ +NG+L + K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 159/324 (49%), Gaps = 40/324 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + FSK+G + S KV+ S DGKS+G+GFV Y ++A A + ++A
Sbjct: 196 YIKNFGDEFDDEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFVCYEDPDAAERACDDMHA 255
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
+ G L+ GR Q+ + + E + NLYVKN++D +D+
Sbjct: 256 KDMNGKTLFV-----GRAQKRNERQTELRRKFEQMKIERLNRYQGVNLYVKNLDDTIDDE 310
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ F+ G I+S K+M GFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 311 RLRKEFAPYGTITSAKVMTEGGRNKGGFGFVCFSSPEEATKAVTEMNGRILVSKPLYVAL 370
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNF---------------PVHPTLYQRALQVYQ--- 275
AQ K +R + L Y ++ G+ P+ P + Q+ Q
Sbjct: 371 AQRKEDRKAQLASQYMQRMAGMRMQQMGQMFQPGGPGYFMPAPIQPQRFYTPAQMAQFRA 430
Query: 276 ----------APGFRHGGMI--PNGFSSPPPSPLFLTRAGQAAANNLTNGNQRAAANNSM 323
PGF+ + P S P + + + AG + G + A SM
Sbjct: 431 TPRWSAQPQPRPGFKFTPAMRNPPSQGSLPSNAMGGSAAGGMQQALVVQGQEPLTA--SM 488
Query: 324 LAVASPDERKDILGQGLYPLVKKL 347
LA A+P+++K +LG+ L+PL++++
Sbjct: 489 LASAAPNDQKQMLGERLFPLIQRM 512
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 110/190 (57%), Gaps = 14/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN ++ FS FG+I S KV + G SKGYGFV + T+ESA+NAI K
Sbjct: 103 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDEAGNSKGYGFVHFETEESAVNAITK--- 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L + GR + K+ + ++ E+ N+Y+KN D+ D+ +L
Sbjct: 160 --VNGMLLNGKKVFVGRF--------IPRKDRERELGEKAKYFTNVYIKNFGDEFDDEKL 209
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS+ G ++S K+M ++ G S+GFGFVC+ +PD A RA + ++ + K L+V AQ
Sbjct: 210 FECFSKYGKVTSHKVMSSDDGKSRGFGFVCYEDPDAAERACDDMHAKDMNGKTLFVGRAQ 269
Query: 236 TKRERTSYLR 245
+ ER + LR
Sbjct: 270 KRNERQTELR 279
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 21/187 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + L + FS G + S +V +S GY +V + A A++ +
Sbjct: 15 YVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMN 74
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G R RI S +L + N+++KN++ +D +
Sbjct: 75 FDVLRG--------RPIRIMWSQRDPSLRRSGVG----------NIFIKNLDKTIDNKAM 116
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA--I 233
FS G I S K+ + G SKG+GFV F + A AI +NG+L + K ++V I
Sbjct: 117 YDTFSAFGNILSCKVAQDEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVGRFI 176
Query: 234 AQTKRER 240
+ RER
Sbjct: 177 PRKDRER 183
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 117/198 (59%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ LA I + ++F+K+G + S+ + V QDGKSKG+GFV ++ E+A A+ +L+
Sbjct: 163 YVKGLAPEISEAEFSELFAKYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHD 222
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ +G LY R Q+ K+ + ++ L NLYVKN+ DD+DE
Sbjct: 223 SEHKGQTLYV-----SRAQKKGEREEELKKSYEQQKYDKSLKYQGVNLYVKNLEDDMDEE 277
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
++ F+ G I+S KIMR +G SKGFGFVCFS+PDEA +A+ LNG +F QKPLYV++
Sbjct: 278 KVTAEFAAFGTITSTKIMRDEKGASKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSL 337
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K R L A++
Sbjct: 338 AQRKDVRKQQLEAQLAQR 355
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 100/199 (50%), Gaps = 20/199 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F+ FG+I S KV + ++G SKGYGFV Y E+A AI+
Sbjct: 70 FIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFVHYEGGEAAEAAIQ---- 125
Query: 117 ATVEGMELYAPSLRAG----RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
V GM L + G R + A D+V NLYVK + ++ E
Sbjct: 126 -AVNGMLLNDKVVYVGHHVPRRERQAKI---------DEVRSNYT--NLYVKGLAPEISE 173
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
E + F++ G ++S + G SKGFGFV F++ + A +A+ L+ + LYV+
Sbjct: 174 AEFSELFAKYGQVTSAVLQVDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYVS 233
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER L+ Y +Q
Sbjct: 234 RAQKKGEREEELKKSYEQQ 252
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 92 KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDD 151
+S GY +V + A+E+L ++G + RI S L +L
Sbjct: 18 RSLGYAYVNFMNAADGERALEQLNYTPIKG--------KPCRIMWSQRDPALRKTSLG-- 67
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDE 211
N+++KN+++ +D L F+ G I S K+ G+SKG+GFV + +
Sbjct: 68 --------NIFIKNLDESIDNKALHDTFAAFGNILSCKVALDENGLSKGYGFVHYEGGEA 119
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
A AI +NG+L + K +YV +RER + +
Sbjct: 120 AEAAIQAVNGMLLNDKVVYVGHHVPRRERQAKI 152
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 170/350 (48%), Gaps = 74/350 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL + D L + F +FG++ S KV+ + G SK +GF+ + + A A+E ++
Sbjct: 185 FVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMH 244
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+EG +LY GR Q+ A ++ +K + + +E + + NLYVKN++D +D
Sbjct: 245 EKEIEGKKLYC-----GRAQKKAERSS-ELKAKYEKIKQERIQRYQGVNLYVKNLDDSID 298
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F Q G I+S K++ G SKGFGFVCFS+P+EA +A+ +NG +F KPLYV
Sbjct: 299 DEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYV 358
Query: 232 AIAQTKRERTSYLRIMYAKQ-----------GPGLASTNFP----VHPTLYQRALQVY-- 274
+AQ K +R ++L+ Y ++ G + + NF + PT+ + +Q++
Sbjct: 359 GLAQRKEDRKAHLQQQYMQRVSTGIRMQAFMGNQVVNQNFQPPRYILPTMQGQPVQMFPQ 418
Query: 275 ------------------QAPGFRHGGMIPNG-------------------FSSPPPSPL 297
Q PG G M G PP P
Sbjct: 419 GTPMVRATPRWAPPNQRVQMPGMVRGRMAQQGGPQFRLTPSVRNVQIPSEVIQMPPQMPH 478
Query: 298 FLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKL 347
AG A LT +SMLA A+P E+K +LG+ L+PL++ +
Sbjct: 479 QNQPAGDQAPETLT---------SSMLANANPQEQKQMLGERLFPLIQSM 519
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 98/201 (48%), Gaps = 26/201 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV +G SKG+GFV Y + ESA AIEK+
Sbjct: 93 FIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNG 151
Query: 117 ATVEGMELYAPSL--RAGRIQE----SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+E +++ R R++E + F NL+VKNL D + L KN
Sbjct: 152 MLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKN---------- 201
Query: 171 DEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
F Q G ++S I G+SK GF+ F D+A A+ ++ K L
Sbjct: 202 --------FEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKL 253
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
Y AQ K ER+S L+ Y K
Sbjct: 254 YCGRAQKKAERSSELKAKYEK 274
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKGFGFV + + + A RAI +
Sbjct: 91 NVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKV 149
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L K ++VA +++ +R
Sbjct: 150 NGMLMEDKKVFVARFKSRNDR 170
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 124/202 (61%), Gaps = 9/202 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL T+D+ KL ++F FG I S+K++ +++G+ +G+GFV + E+A A+E+L
Sbjct: 195 YVKNLNETMDDKKLREMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNN 254
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
VEG E+Y GR Q+ A + + E I NLYVKN+++ +D+
Sbjct: 255 KEVEGKEIYV-----GRAQKKAERQAELKEKFERMKMERINRYQGVNLYVKNLDEQIDDE 309
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ FSQ G I+S ++M T G +KGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 310 RLRKEFSQFGTITSARVM-TEGGRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVAL 368
Query: 234 AQTKRERTSYLRIMYAKQGPGL 255
AQ K +R ++L Y ++ G+
Sbjct: 369 AQRKEDRKAHLAAQYMQRIAGM 390
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FG+I S K+ + Q+G S GYGFV + T+E+A N+IEK
Sbjct: 103 FIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNG-SLGYGFVHFETEEAARNSIEK--- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + GR ++ L D + N+YVKN+N+ +D+ +L+
Sbjct: 159 --VNGMLLNGKKVFVGRFMSRKE----RLEMLGDKAKKFT---NVYVKNLNETMDDKKLR 209
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G I S K+M T G +GFGFV F + + A +A+ LN K +YV AQ
Sbjct: 210 EMFEVFGKIISAKMMNTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQK 269
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 270 KAERQAELKEKFER 283
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ ++D L FS G I S KI G S G+GFV F + A +I +
Sbjct: 101 NIFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNG-SLGYGFVHFETEEAARNSIEKV 159
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K ++V +++ER L
Sbjct: 160 NGMLLNGKKVFVGRFMSRKERLEML 184
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 13 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSL--GYAYVNFQQPADAERAL 70
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N +P +RIM++++ P L
Sbjct: 71 DTMNFDAIKGRP---------------IRIMWSQRDPSL 94
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 116/189 (61%), Gaps = 3/189 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N DN KL ++FS+FG+I+S+ V+ +GKSKG+GFV Y + A NA+ ++
Sbjct: 195 YVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHG 254
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+EG LY RA R +E K + + +L+ NLYVKN++D++D+ L
Sbjct: 255 KEIEGRVLYC--ARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLYVKNLDDNIDDKRL 312
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M+ SKGFGFVCF+NP++A RA+ +NG + KPLYVA+AQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 236 TKRERTSYL 244
K +R + L
Sbjct: 373 RKEDRRAKL 381
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+ +L+ FS FG I S K+V+ ++G+SKGYGFV + +E A AIEK+
Sbjct: 104 FIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINN 163
Query: 117 ATVEGMELYA----PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +Y P FNNLYVKN + E
Sbjct: 164 MIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNE----------------- 206
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS+ G I S +M+ N G SKGFGFVC+ +PD A A+ T++G + LY A
Sbjct: 207 -KLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCA 265
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER L+ KQ
Sbjct: 266 RAQRKEERQEELKQKIEKQ 284
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + L FS+ G + S++V +S GYG+V + + A A+E L
Sbjct: 16 YVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEVLN 75
Query: 116 AATVEGMELYAPSL-RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
Y P + R RI S D + N+++KN++ +++ E
Sbjct: 76 ---------YEPLMGRPIRIMWSQR----------DPSLRKSGKGNIFIKNLDKSIEQKE 116
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S KI+ G SKG+GFV F + A RAI +N ++ + +YV
Sbjct: 117 LYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKF 176
Query: 235 QTKRERTSYLR 245
K ER S R
Sbjct: 177 IPKTERKSQAR 187
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 20/106 (18%)
Query: 153 TEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNP 209
++ +++ +LYV +++ V + L+ FS+ G + S ++ R T + + G+G+V F +P
Sbjct: 7 SQGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSL--GYGYVNFEDP 64
Query: 210 DEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A +A+ LN +P +RIM++++ P L
Sbjct: 65 KHAEQALEVLNYEPLMGRP---------------IRIMWSQRDPSL 95
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 135/259 (52%), Gaps = 13/259 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +I++ + ++FSKFG I S+ V ++GKSKG+GF+ + E A A++ L
Sbjct: 223 YVKNLDESINDEQFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLNE 282
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
G LY R Q+ K + E++ NLY+KN++DD+D+
Sbjct: 283 TEHNGKTLYV-----ARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDE 337
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+Q FS G+I+S K+M +G SKGFGFVCFS+PDEA +A+ +NG + KP+YVA+
Sbjct: 338 KLRQEFSVYGVITSAKVMCDEKGTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVAL 397
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPV--HPTLYQRALQVYQAPG-FRHGGMIPNGFS 290
AQ K R S L A++ P+ P A Y PG F G P F+
Sbjct: 398 AQRKEVRRSQLEAQMAQRNQMRMQQGMPMPGAPGYMPGAPMFYAPPGQFMPQGQRPTVFA 457
Query: 291 --SPPPSPLFLTRAGQAAA 307
+ P P + + GQ A
Sbjct: 458 PNNMMPRPRWAPQQGQPVA 476
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 110/200 (55%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN LH FS FG+I S K+ + + G SKGYGFV Y T+E+A NAI+ +
Sbjct: 130 FIKNLDTSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVDG 189
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +I++ A F N+YVKNLD+ + +E
Sbjct: 190 MLLNDKKVYVGRHIPRKERQAKIEQIRAKFTNVYVKNLDESINDE--------------- 234
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ K+ FS+ G I+S + G SKGFGF+ F N ++A++A++TLN + K LY
Sbjct: 235 ---QFKEMFSKFGPITSALVQTDEEGKSKGFGFINFENYEDAHKAVDTLNETEHNGKTLY 291
Query: 231 VAIAQTKRERTSYLRIMYAK 250
VA AQ K ER LR Y +
Sbjct: 292 VARAQKKTEREEELRKQYEQ 311
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 23/203 (11%)
Query: 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESA 107
+P+ + L ++ L ++F+ G + S + V +D +S GY +V +
Sbjct: 36 SPSASLYVGELDPSVTEAMLFEMFNMIGPVAS--IRVCRDAVTRRSLGYAYVNFHNIVDG 93
Query: 108 LNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
A+E L ++G + RI S D + N+++KN++
Sbjct: 94 ERALESLNYTLIKG--------KPCRIMWSQR----------DPSLRKTGSGNVFIKNLD 135
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
+D L FS G I S KI G SKG+GFV + + A+ AI ++G+L + K
Sbjct: 136 TSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDK 195
Query: 228 PLYVAIAQTKRERTSYLRIMYAK 250
+YV ++ER + + + AK
Sbjct: 196 KVYVGRHIPRKERQAKIEQIRAK 218
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 162/363 (44%), Gaps = 80/363 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL L +F FG+I S+ + V +DG SKG+ FV Y+T ++A A+++L
Sbjct: 241 FIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELND 300
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE---EILDKNLYVKNINDDVDEI 173
+ G +LY GR Q+ A + + ++ E + NLYVKNI+D+ D+
Sbjct: 301 KEINGKKLYV-----GRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDD 355
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ F G I+S K+MR ++G S+GFGFVCFS PDEA RA+ +NG + KPLYV++
Sbjct: 356 RLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSL 415
Query: 234 AQTKRERTSYL----------RIMYA-------KQG--------PGLASTNFPVHPTL-- 266
AQ K R L R+ YA QG P + P+ P
Sbjct: 416 AQKKEVRRQALESQMQQRNAQRLQYAAANGLGGPQGYMQAPMYYPPMGPYGGPMMPVRGG 475
Query: 267 ---YQRALQVYQA------PGFRHGGMIPNGFSSP-------PPSPLFLTRA-------- 302
Y A + A P + G +P G+ P P P + R
Sbjct: 476 VVGYPGAPPMMGARPGRYPPSGQPGAPVPMGYMPPGGAGGNYPGMPNYPVRPAGNARPPT 535
Query: 303 -----------------GQAAANNLTNGNQRAAANNSM----LAVASPDERKDILGQGLY 341
GQ A +G Q AA + LA ASP E+K +LG+ +Y
Sbjct: 536 AARPNGSPSGAQQGLPRGQVPARPQGDGAQAAAGQPRLTAQALARASPGEQKQMLGEAIY 595
Query: 342 PLV 344
PL+
Sbjct: 596 PLI 598
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 24/201 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G S+G+ FV Y T E+A AI+ +
Sbjct: 148 FIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNG 207
Query: 117 ATVEGMELY-----APSLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y + R +++E A F N+++KNL+ + T++
Sbjct: 208 MLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQK--------------- 252
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+L+ F G I S + G+SKGF FV ++ D A +A++ LN + K LY
Sbjct: 253 ---DLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLY 309
Query: 231 VAIAQTKRERTSYLRIMYAKQ 251
V AQ + ER LR M+ ++
Sbjct: 310 VGRAQKRAERDEELRRMHEER 330
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V Y A+E
Sbjct: 60 YVGELDPSVTEAMLFEIFNMVGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADGERALEH 117
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++ R RI S D + N+++KN++D +D
Sbjct: 118 LNYSLIKN--------RPCRIMWSQR----------DPALRKTGQGNIFIKNLDDKIDNK 159
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ G S+GF FV + + A+ AI ++NG+L + K +YV
Sbjct: 160 ALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGH 219
Query: 234 AQTKRERTSYLRIMYAK 250
+K+ER S + AK
Sbjct: 220 HISKKERQSKVEEQRAK 236
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 16/226 (7%)
Query: 74 FSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133
FS+FG I S K++ DG S G+GFV + ESA+ A E T+ GM L + +L R
Sbjct: 240 FSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQE-----TMHGMLLGSKALYVAR 294
Query: 134 IQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIELKQYFSQCGIISSVK 189
Q+ Y++ L ++ EI+ K N+Y+KNI+D+VD+ L+ F++ G I+S K
Sbjct: 295 AQKKEE-RKQYLQRLHEEKRNEIITKSNESNVYIKNIHDEVDDDALRARFAEYGNITSAK 353
Query: 190 IMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
+MR ++GIS+GFGFVC+S P+EA +N++ G++F KPLYVAI Q K ER + L+ +A
Sbjct: 354 VMRDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVAIFQRKEERRAKLQQHFA 413
Query: 250 KQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIP--NGFSSPP 293
+ + TN + PT Y QVY A H P +GF PP
Sbjct: 414 QLARMVGPTNSMI-PTGYP---QVYFAHPNAHIPQGPPRHGFVYPP 455
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/196 (43%), Positives = 120/196 (61%), Gaps = 17/196 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +++DN L ++FSKFGD+ S KV ++DG S+GYGFVQ+++QESA AI L
Sbjct: 133 FVKNLNNSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYGFVQFASQESADEAIGNLNG 192
Query: 117 ATVEGMELYAPSLRAGRIQESA-SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ +L+ + I++S S NN DD T NLY+K+++DD+ E +
Sbjct: 193 SLFNDRKLHVATF----IKKSERSANN------DDKFT------NLYMKHLDDDITEELV 236
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K FSQ G I SVKIMR G S GFGFV F NP+ A +A T++G+L K LYVA AQ
Sbjct: 237 KLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHGMLLGSKALYVARAQ 296
Query: 236 TKRERTSYLRIMYAKQ 251
K ER YL+ ++ ++
Sbjct: 297 KKEERKQYLQRLHEEK 312
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L FSK G + S +V +S YG+V Y ++ A+ A++KL
Sbjct: 45 YVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKLN 104
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ V + R+ S N D D + N++VKN+N+ VD L
Sbjct: 105 HSLVLDKPI--------RVMWS---------NRDPDARRSGVG-NIFVKNLNNSVDNASL 146
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS+ G + S K+ + G S+G+GFV F++ + A+ AI LNG LF+ + L+VA
Sbjct: 147 QELFSKFGDVLSCKVAKNEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFI 206
Query: 236 TKRERTS 242
K ER++
Sbjct: 207 KKSERSA 213
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 123/315 (39%), Gaps = 80/315 (25%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ +D+ L F+++G+I S+KV+ G S+G+GFV YST E A + + +
Sbjct: 326 YIKNIHDEVDDDALRARFAEYGNITSAKVMRDDKGISRGFGFVCYSTPEEAKSVVNSMRG 385
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
G LY + R +E + +L+
Sbjct: 386 VMFFGKPLYVAIFQ--RKEERRA----------------------------------KLQ 409
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
Q+F+Q + + TN I G+ V F++P+ +G +Y + +
Sbjct: 410 QHFAQLARM----VGPTNSMIPTGYPQVYFAHPNAHIPQGPPRHGF------VYPPMGLS 459
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGG-MIP--------N 287
R + P L + P+ P + + Y++ R GG M+P N
Sbjct: 460 HEWRPNMF-----PSAPNLPQIHSPMMPN----SPRHYRSNRGRMGGNMMPLPHAVHAMN 510
Query: 288 GFSSPPPSPLFLTRAGQ-----------AAANNLT--NGNQRAAANNSM---LAVASPDE 331
+ P+ F++ Q AN L + + N+S LA A P E
Sbjct: 511 YVTHAQPTKEFMSMPRQRFNHSKYFSNDVMANGLAIHQSDPVSTMNDSFSSYLASAPPAE 570
Query: 332 RKDILGQGLYPLVKK 346
+K++LG LYPLV++
Sbjct: 571 QKNLLGNRLYPLVER 585
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 173/352 (49%), Gaps = 85/352 (24%)
Query: 74 FSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133
FS+FG I S K++ DG S G+GFV + ESA+ A +T+ GM L + +L R
Sbjct: 319 FSQFGSIVSVKIMKRPDGSSLGFGFVSFQNPESAIKA-----QSTMNGMLLGSKALYVAR 373
Query: 134 IQESASFNNLYVKNLDDDVTEEIL----DKNLYVKNINDDVDEIELKQYFSQCGIISSVK 189
Q+ Y++ L ++ EI+ + N+Y+KNI+D+VD+ L+ F + G I+S K
Sbjct: 374 AQKKEE-RKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDALRARFVEFGNITSAK 432
Query: 190 IMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
+MR ++GIS+GFGFVC+S P+EA A+N + G++F KPLYVAI Q K ER + L+ +A
Sbjct: 433 VMRDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYVAIFQRKEERKAKLQQHFA 492
Query: 250 K-----------------------------QGP----------GLAS----TNFPVHPTL 266
+ QGP GL+ + FP P L
Sbjct: 493 QLARMVGPANSMIPTGYPQVYFAHPSTHIPQGPPRHGFVYPPMGLSHEWRPSMFPPAPNL 552
Query: 267 YQ-------RALQVYQAPGFRHGG-MIP--------NGFSSPPPSPLFLTRAGQ------ 304
Q + + Y++ R GG M+P N + P P+ F++ Q
Sbjct: 553 QQIHSPVMPNSPRHYRSNRGRMGGNMMPLPHAVHTMNYMTHPQPAKEFMSLPRQRFNHPK 612
Query: 305 -----AAANNLT--NGNQRAAANNSM---LAVASPDERKDILGQGLYPLVKK 346
AN+L + + N+S LA A P E+K++LG LYPLV++
Sbjct: 613 YFSNDVMANSLAIHQSDPVSTMNDSFSNYLASAPPAEQKNLLGNRLYPLVER 664
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 122/196 (62%), Gaps = 17/196 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+S++DN L ++FSKFGD+ S KV ++DG S+GYGFVQ+++QESA AI L
Sbjct: 212 FVKNLSSSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYGFVQFTSQESADEAIGNLNG 271
Query: 117 ATVEGMELYAPSLRAGRIQESA-SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ +L+ + I++S S NN DD T NLY+K+++DD+ E +
Sbjct: 272 SLFNDRKLHVATF----IKKSERSANN------DDKFT------NLYMKHLDDDITEELV 315
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K FSQ G I SVKIM+ G S GFGFV F NP+ A +A +T+NG+L K LYVA AQ
Sbjct: 316 KLKFSQFGSIVSVKIMKRPDGSSLGFGFVSFQNPESAIKAQSTMNGMLLGSKALYVARAQ 375
Query: 236 TKRERTSYLRIMYAKQ 251
K ER YL+ ++ ++
Sbjct: 376 KKEERKQYLQRLHEEK 391
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L + FSK G + S +V +S YG+V Y ++ A+ A++KL
Sbjct: 124 YVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKLN 183
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ V + R+ S N D D + N++VKN++ VD L
Sbjct: 184 HSLVLDKPI--------RVMWS---------NRDPDARRSGVG-NIFVKNLSSSVDNASL 225
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS+ G + S K+ + G S+G+GFV F++ + A+ AI LNG LF+ + L+VA
Sbjct: 226 QELFSKFGDVLSCKVAKNEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFI 285
Query: 236 TKRERTS 242
K ER++
Sbjct: 286 KKSERSA 292
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 126/211 (59%), Gaps = 4/211 (1%)
Query: 48 AMATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQES 106
A +P F V NL+ T + L + FS +G I S+ V+ Q GKSKG+GFV + + +S
Sbjct: 195 ATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDS 254
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
A A+EKL T Y RA R E + + + E++ NLY+KN+
Sbjct: 255 AAAAVEKLNGTTFNDKVWYVG--RAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNL 312
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
+D +D+ +LK+ FS+ G I+S K+M +G+SKG GFV FS P+EA+RA+N +NG + +
Sbjct: 313 DDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGK 372
Query: 227 KPLYVAIAQTKRERTSYLRIMYAK-QGPGLA 256
KPLYVA+AQ + ER + L+ + + Q PGL+
Sbjct: 373 KPLYVAVAQRREERKARLQAHFTQIQAPGLS 403
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 109/199 (54%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L + F+ FG + S KV V +G+SKGYGFVQ+ +E+A +AI +L
Sbjct: 114 FIKNLDTSIDNKALQETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNG 173
Query: 117 ATVEGMELYAPSL--RAGRIQESAS--FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ E++ RI+ + S F N+YVKNL + ++E
Sbjct: 174 MLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDE----------------- 216
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK++FS G I+S +M+ G SKGFGFV F +PD A A+ LNG F+ K YV
Sbjct: 217 -DLKKFFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVG 275
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER + L+ + ++
Sbjct: 276 RAQRKGEREAELKARFEQE 294
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ +L +FS+ + S +V Q + S GY +V +S + A NA+E L
Sbjct: 26 YVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMELLN 85
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G +A RI S D + N+++KN++ +D L
Sbjct: 86 FTPLNG--------KAIRIMVSHR----------DPSMRKSGHANVFIKNLDTSIDNKAL 127
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F+ G + S K+ N G SKG+GFV F N + A AIN LNG+L + K ++V
Sbjct: 128 QETFASFGPVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFV 187
Query: 236 TKRER 240
+ER
Sbjct: 188 RHQER 192
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAI 216
+ +LYV ++ +V+E +L FSQ + S+++ R R S G+ +V FSNP +A A+
Sbjct: 22 NSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAM 81
Query: 217 NTLNGILFHQKPLYVAIAQ 235
LN + K + + ++
Sbjct: 82 ELLNFTPLNGKAIRIMVSH 100
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/211 (39%), Positives = 126/211 (59%), Gaps = 4/211 (1%)
Query: 48 AMATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQES 106
A +P F V NL+ T + L + FS +G I S+ V+ Q GKSKG+GFV + + +S
Sbjct: 205 ATGSPKFTNVYVKNLSETTSDEDLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDS 264
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
A A+EKL T Y RA R E + + + E++ NLY+KN+
Sbjct: 265 AAAAVEKLNGTTFNDKVWYVG--RAQRKGEREAELKARFEQERNSRYEKLKAANLYLKNL 322
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
+D +D+ +LK+ FS+ G I+S K+M +G+SKG GFV FS P+EA+RA+N +NG + +
Sbjct: 323 DDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGK 382
Query: 227 KPLYVAIAQTKRERTSYLRIMYAK-QGPGLA 256
KPLYVA+AQ + ER + L+ + + Q PGL+
Sbjct: 383 KPLYVAVAQRREERKARLQAHFTQIQAPGLS 413
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 109/199 (54%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L + F+ FG + S KV V +G+SKGYGFVQ+ +E+A +AI +L
Sbjct: 124 FIKNLDTSIDNKALQETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNG 183
Query: 117 ATVEGMELYAPSL--RAGRIQESAS--FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ E++ RI+ + S F N+YVKNL + ++E
Sbjct: 184 MLINDKEVFVGRFVRHQERIEATGSPKFTNVYVKNLSETTSDE----------------- 226
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK++FS G I+S +M+ G SKGFGFV F +PD A A+ LNG F+ K YV
Sbjct: 227 -DLKKFFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVG 285
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER + L+ + ++
Sbjct: 286 RAQRKGEREAELKARFEQE 304
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ +L +FS+ + S +V Q + S GY +V +S + A NA+E L
Sbjct: 36 YVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAMELLN 95
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G +A RI S D + N+++KN++ +D L
Sbjct: 96 FTPLNG--------KAIRIMVSHR----------DPSMRKSGHANVFIKNLDTSIDNKAL 137
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F+ G + S K+ N G SKG+GFV F N + A AIN LNG+L + K ++V
Sbjct: 138 QETFASFGSVLSCKVAVDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFV 197
Query: 236 TKRER 240
+ER
Sbjct: 198 RHQER 202
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAI 216
+ +LYV ++ +V+E +L FSQ + S+++ R R S G+ +V FSNP +A+ A+
Sbjct: 32 NSSLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAM 91
Query: 217 NTLNGILFHQKPLYVAIAQ 235
LN + K + + ++
Sbjct: 92 ELLNFTPLNGKAIRIMVSH 110
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 122/225 (54%), Gaps = 4/225 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D KL +FSKFG+I S+ V+ GK KG+GFV ++ Q++A A+EKL
Sbjct: 241 FVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLND 300
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +EG + RA + E ++ + L + + NLYVKNI +D+++ L+
Sbjct: 301 SILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLR 360
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+FS G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA+AQ
Sbjct: 361 DHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQR 420
Query: 237 KRERTSYLRIMYAKQ----GPGLASTNFPVHPTLYQRALQVYQAP 277
K +R + L Y ++ G ++ P LYQ Q Y P
Sbjct: 421 KEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVP 465
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 101/194 (52%), Gaps = 14/194 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV +G SKGYGFV + T+ SA AIEK
Sbjct: 148 FIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEK--- 204
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ Q A +K L + + N++VKN + +D+ +L
Sbjct: 205 --VNGMLLSDKKVYVGKFQPRAQ----RMKELGESGLKYT---NVFVKNFGEHLDQEKLS 255
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK--PLYVAIA 234
FS+ G I+S +M +G KGFGFV F++ D A +A+ LN + L V A
Sbjct: 256 AMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRA 315
Query: 235 QTKRERTSYLRIMY 248
Q K ER++ L+ Y
Sbjct: 316 QKKSERSAELKRKY 329
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 19/186 (10%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L + FS G + S +V + S GY +V + A A++ +
Sbjct: 63 DLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEV 122
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+ G R RI S D + N+++KN++ +D +
Sbjct: 123 IHG--------RPMRIMWSQR----------DPAARRAGNGNIFIKNLDRVIDNKSVYDT 164
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
FS G I S K+ + G SKG+GFV F A AI +NG+L K +YV Q +
Sbjct: 165 FSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRA 224
Query: 239 ERTSYL 244
+R L
Sbjct: 225 QRMKEL 230
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 162/363 (44%), Gaps = 80/363 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL L +F FG+I S+ + V +DG SKG+ FV Y+T ++A A+++L
Sbjct: 241 FIKNLEPEFTQKDLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELND 300
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE---EILDKNLYVKNINDDVDEI 173
+ G +LY GR Q+ A + + ++ E + NLYVKNI+D+ D+
Sbjct: 301 KEINGKKLYV-----GRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKNIDDEWDDD 355
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ F G I+S K+MR ++G S+GFGFVCFS PDEA RA+ +NG + KPLYV++
Sbjct: 356 RLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSL 415
Query: 234 AQTKRERTSYL----------RIMYA-------KQG--------PGLASTNFPVHPTL-- 266
AQ K R L R+ YA QG P + P+ P
Sbjct: 416 AQKKEVRRQALESQMQQRNAQRLQYAAANGLGGPQGYMQAPMYYPPMGPYGGPMMPVRGG 475
Query: 267 ---YQRALQVYQA------PGFRHGGMIPNGFSSP-------PPSPLFLTRA-------- 302
Y A + A P + G +P G+ P P P + R
Sbjct: 476 VVGYPGAPPMMGARPGRYPPSGQPGAPVPMGYMPPGGAGGNYPGMPNYPVRPAGNARPPT 535
Query: 303 -----------------GQAAANNLTNGNQRAAANNSM----LAVASPDERKDILGQGLY 341
GQ A +G Q AA + LA ASP E++ +LG+ +Y
Sbjct: 536 AARPNGSPSGAQQGLPRGQVPARPQGDGAQAAAGQPRLTAQALARASPGEQRQMLGEAIY 595
Query: 342 PLV 344
PL+
Sbjct: 596 PLI 598
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 24/201 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G S+G+ FV Y T E+A AI+ +
Sbjct: 148 FIKNLDDKIDNKALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNG 207
Query: 117 ATVEGMELY-----APSLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y + R +++E A F N+++KNL+ + T++
Sbjct: 208 MLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIKNLEPEFTQK--------------- 252
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+L+ F G I S + G+SKGF FV ++ D A +A++ LN + K LY
Sbjct: 253 ---DLEDMFKPFGEIVSAALSVGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLY 309
Query: 231 VAIAQTKRERTSYLRIMYAKQ 251
V AQ + ER LR M+ ++
Sbjct: 310 VGRAQKRAERDEELRRMHEER 330
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 88/197 (44%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V Y A+E
Sbjct: 60 YVGELDPSVTEAMLFEIFNMVGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADGERALEH 117
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++ R RI S D + N+++KN++D +D
Sbjct: 118 LNYSLIKN--------RPCRIMWSQR----------DPALRKTGQGNIFIKNLDDKIDNK 159
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ G S+GF FV + + A+ AI ++NG+L + K +YV
Sbjct: 160 ALHDTFAAFGNILSCKVATDENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGH 219
Query: 234 AQTKRERTSYLRIMYAK 250
+K+ER S + AK
Sbjct: 220 HISKKERQSKVEEQRAK 236
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 113/200 (56%), Gaps = 3/200 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ +DGKSKG+GFV Y T E+A A++ L
Sbjct: 186 YVKNFTEEFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ EG LY RA + E + L E + NLYVKN++D +D+ L
Sbjct: 246 KDMGEGKSLYVA--RAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERL 303
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M + G SKGFGFVCF +P+EA A+ LNG + KPLYVA+AQ
Sbjct: 304 RKEFSLYGTITSAKVMTDDEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQ 363
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K ER ++L Y + G+
Sbjct: 364 RKEERKAHLASQYMRHMTGM 383
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 93 FIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN ++ D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFTEEFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK++F G I+S K+M G SKGFGFV + + A A+ LNG + K LYVA
Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D++E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLIRNKP---------------IRIMWSQRDPSL 84
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 122/225 (54%), Gaps = 4/225 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D KL +FSKFG+I S+ V+ GK KG+GFV ++ Q++A A+EKL
Sbjct: 124 FVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLND 183
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +EG + RA + E ++ + L + + NLYVKNI +D+++ L+
Sbjct: 184 SILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLR 243
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+FS G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA+AQ
Sbjct: 244 DHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQR 303
Query: 237 KRERTSYLRIMYAKQ----GPGLASTNFPVHPTLYQRALQVYQAP 277
K +R + L Y ++ G ++ P LYQ Q Y P
Sbjct: 304 KEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVP 348
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 101/194 (52%), Gaps = 14/194 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV +G SKGYGFV + T+ SA AIEK
Sbjct: 31 FIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEK--- 87
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ Q A +K L + + N++VKN + +D+ +L
Sbjct: 88 --VNGMLLSDKKVYVGKFQPRAQ----RMKELGESGLKYT---NVFVKNFGEHLDQEKLS 138
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK--PLYVAIA 234
FS+ G I+S +M +G KGFGFV F++ D A +A+ LN + L V A
Sbjct: 139 AMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRA 198
Query: 235 QTKRERTSYLRIMY 248
Q K ER++ L+ Y
Sbjct: 199 QKKSERSAELKRKY 212
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ + G SKG+GFV F A AI +
Sbjct: 29 NIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKV 88
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L K +YV Q + +R L
Sbjct: 89 NGMLLSDKKVYVGKFQPRAQRMKEL 113
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 127/212 (59%), Gaps = 4/212 (1%)
Query: 48 AMATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQES 106
A +P F V NL+ T + L +IFS +G I S+ V+ Q+GKS+G+GFV + + +S
Sbjct: 205 ANGSPKFTNVYVKNLSETTSDEDLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDS 264
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
A A+EKL T Y RA R E + + + E++ NLY+KN+
Sbjct: 265 AAAAVEKLNGMTFSDKVWYVG--RAQRKGEREAELKAKFEQERNSRYEKMKAANLYLKNL 322
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
D +DE LK+ FS+ G I+S K+M +G+SKG GFV FS P+EA+RA++ +NG + +
Sbjct: 323 GDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGK 382
Query: 227 KPLYVAIAQTKRERTSYLRIMYAK-QGPGLAS 257
KPLYVAIAQ + ER + L+ +++ Q PGL +
Sbjct: 383 KPLYVAIAQRREERMARLQAHFSQIQAPGLPT 414
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 108/199 (54%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN L++ F+ FG + S KV V +G+SKGYGF+Q+ +E A +AI +L
Sbjct: 124 FIKNLDTKIDNKALYETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNG 183
Query: 117 ATVEGMELYAPSL--RAGRIQESAS--FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
V E+Y R RI+ + S F N+YVKNL + ++E
Sbjct: 184 MLVNDREVYVGPFVRRLERIEANGSPKFTNVYVKNLSETTSDE----------------- 226
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS G I+S +M+ G S+GFGFV F +PD A A+ LNG+ F K YV
Sbjct: 227 -DLKKIFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYVG 285
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER + L+ + ++
Sbjct: 286 RAQRKGEREAELKAKFEQE 304
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG-KSKGYGFVQYSTQESALNAIEKLY 115
+ +L + +L +FS+ + S++V Q G S GY +V +S + A A+E L
Sbjct: 36 YVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEVLN 95
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + RI S D T N+++KN++ +D L
Sbjct: 96 FTPLNGKPI--------RIMFSHR----------DPTTRRSGHANVFIKNLDTKIDNKAL 137
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F+ G + S K+ N G SKG+GF+ F N ++A AIN LNG+L + + +YV
Sbjct: 138 YETFASFGPVLSCKVAVDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFV 197
Query: 236 TKRER 240
+ ER
Sbjct: 198 RRLER 202
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI-SKGFGFVCFSNPDEANRAI 216
+++LYV ++ +V E +L FSQ + S ++ R G+ S G+ +V FSNP +A +A+
Sbjct: 32 NRSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAM 91
Query: 217 NTLNGILFHQKPLYVAIAQ 235
LN + KP+ + +
Sbjct: 92 EVLNFTPLNGKPIRIMFSH 110
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 117/189 (61%), Gaps = 3/189 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N DN KL ++F++FG+I+S+ V+ +GKSKG+GFV + + A NA++ ++
Sbjct: 195 YIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHG 254
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+EG LY RA R +E K + + +L+ NLYVKN++D++D+ L
Sbjct: 255 KEIEGRALYC--ARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M+ SKGFGFVCF+NP++A RA+ +NG + KPLYVA+AQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 236 TKRERTSYL 244
K +R + L
Sbjct: 373 RKEDRRAKL 381
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 100/195 (51%), Gaps = 14/195 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+ +L+ FS FG I S K+V+ ++G+SKGYGFV + +E A AIEK+
Sbjct: 104 FIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINN 163
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +Y K ++ NLY+KN + D +LK
Sbjct: 164 MIIRDRVVY--------------VGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLK 209
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G I S +M+ + G SKGFGFVCF +PD A A+ T++G + LY A AQ
Sbjct: 210 EMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQR 269
Query: 237 KRERTSYLRIMYAKQ 251
K ER L+ KQ
Sbjct: 270 KEERQEELKQRLEKQ 284
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L + + L FS+ G + S++V + S GYG+V + + A A+E L
Sbjct: 16 YVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLN 75
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++ G R RI S D + N+++KN++ +++ EL
Sbjct: 76 YESLMG--------RPIRIMWSQR----------DPSLRKSGKGNIFIKNLDKSIEQKEL 117
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S KI+ G SKG+GFV F + A RAI +N ++ + +YV
Sbjct: 118 YDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFI 177
Query: 236 TKRERTSYLR 245
K ER S R
Sbjct: 178 PKTERKSQAR 187
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNP 209
++ +++ +LYV +++ V + L+ FS+ G + S ++ R R S G+G+V F +P
Sbjct: 6 ASQGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRH-SLGYGYVNFEDP 64
Query: 210 DEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A +A+ LN +P +RIM++++ P L
Sbjct: 65 KHAEQALEVLNYESLMGRP---------------IRIMWSQRDPSL 95
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 175/366 (47%), Gaps = 81/366 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++ L +IF ++G I S+ V+ DGKSKG+GFV ++ + A A+E L
Sbjct: 206 FVKNLLDSMTEADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNG 265
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+G E Y G+ Q+ S L +K + +T+E +DK NLY+KN++D V +
Sbjct: 266 KNFDGKEWYV-----GKAQKK-SERELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGD 319
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
EL + FS+ G I+S K+MR GIS+G GFV FS + A RA+ +NG + KPLYVA
Sbjct: 320 EELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRALGEMNGKMVAGKPLYVA 379
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTN----FPVHPT---------LYQRA--------- 270
+AQ K +R + L+ +++ P + N P++P LY +A
Sbjct: 380 LAQRKEDRRARLQAQFSQSRPAAITPNVSPRMPLYPLGAPAIGQQFLYGQAAPATIPQAA 439
Query: 271 --LQVYQAPGFRHGGMIPNGF------------------SSP-----PPSPL----FLTR 301
Q + PG R GG PN + S P P PL L R
Sbjct: 440 FGYQQHFVPGMRPGGA-PNFYVPLVQQGQQGQRPGGHRGSGPMQQLQQPLPLMHQQMLPR 498
Query: 302 AG---QAAANNLTN---------------GNQR-AAANNSMLAVASPDERKDILGQGLYP 342
+ +N+ N G Q A S LA A+P++++ +LG+ LYP
Sbjct: 499 GHVYRYPSGSNMQNIQLAGVPGGMVTYGIGQQMPTQALASALANATPEQQRTMLGEALYP 558
Query: 343 LVKKLK 348
LV KL+
Sbjct: 559 LVDKLE 564
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 105/193 (54%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ L+ FS FG+I S KV G+SKG+GFVQ+ ++ESA NAI+KL
Sbjct: 115 FIKNLDKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFESEESAQNAIDKLNG 174
Query: 117 ATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ + +ESA FNN++VKNL D +TE
Sbjct: 175 MLINDKQVFVGPFLRKQDRESALSGTKFNNVFVKNLLDSMTE------------------ 216
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F + G I+S +MR G SKGFGFV F+N D+A +A+ LNG F K YV
Sbjct: 217 ADLERIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVG 276
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 277 KAQKKSERELELK 289
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 26/209 (12%)
Query: 42 SIDVHSAMATPTFIPFTV---NLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKG 95
+ID ++ A P+ ++ +L +++ +L+ +F++ + S ++ V +Q +S G
Sbjct: 9 TIDAAASGANPSLTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQ--QSLG 66
Query: 96 YGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE 155
YG+V +S A AI+ L + G + RI S + D +
Sbjct: 67 YGYVNFSNAHDAAKAIDVLNFTPLNGKII--------RIMYS----------IRDPSARK 108
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRA 215
N+++KN++ +D L FS G I S K+ G SKG GFV F + + A A
Sbjct: 109 SGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASGQSKGHGFVQFESEESAQNA 168
Query: 216 INTLNGILFHQKPLYVAIAQTKRERTSYL 244
I+ LNG+L + K ++V K++R S L
Sbjct: 169 IDKLNGMLINDKQVFVGPFLRKQDRESAL 197
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/325 (34%), Positives = 153/325 (47%), Gaps = 43/325 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID L ++FS+FG S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLQMDIDEQGLEELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNN------LYVKNLDDDVTEEILDKNLYVKNINDDV 170
V G LY GR Q+ A N +K + D NLYVKN++D +
Sbjct: 254 KEVRGQLLYV-----GRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKNLDDSI 308
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLY
Sbjct: 309 DNERLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGCILGTKPLY 367
Query: 231 VAIAQTKRERTSYLRIMYAKQ---------GPGLASTNFPVH---PTLYQ-RAL-----Q 272
VA+AQ K ER + L + +Q GP L S PV PT+ Q RA Q
Sbjct: 368 VALAQRKDERKAILTNQFMQQRLSNVWALGGPHLGSFQQPVSYFLPTVPQVRACLQPDSQ 427
Query: 273 VYQAPGFR------------HGGMIP-NGFSSPPPSPLFLTRAGQAAANNLTNGNQRAAA 319
V Q F+ GG P + + PS R +
Sbjct: 428 VEQEESFKANIVPRLLLPETAGGFHPVSKRADENPSLRMCPRHHVQVQEPAVCIPGQEPL 487
Query: 320 NNSMLAVASPDERKDILGQGLYPLV 344
SMLA A ++K ++G+ LYPL+
Sbjct: 488 TVSMLAAAPLHKQKQMIGERLYPLI 512
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV G S+G+GFV + T+E+A AI +
Sbjct: 102 FIKNLEESIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETREAAQQAISTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L V+ ++ N+YVKN+ D+DE L+
Sbjct: 161 MLLNNRKVFVSHFKSRQEREA----ELGVRAMEF--------TNVYVKNLQMDIDEQGLE 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR + G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGQLLYVGRAQK 268
Query: 237 KRERTSYLR 245
ER + L+
Sbjct: 269 WAERQNELK 277
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ + +D L FS G I S K++ + G S+GFGFV F + A +AI+T+
Sbjct: 100 NIFIKNLEESIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETREAAQQAISTM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRI 246
NG+L + + ++V+ ++++ER + L +
Sbjct: 159 NGMLLNNRKVFVSHFKSRQEREAELGV 185
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 117/189 (61%), Gaps = 3/189 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N DN KL ++F++FG+I+S+ V+ +GKSKG+GFV + + A NA++ ++
Sbjct: 195 YIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHG 254
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+EG LY RA R +E K + + +L+ NLYVKN++D++D+ L
Sbjct: 255 KEIEGRALYC--ARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M+ SKGFGFVCF+NP++A RA+ +NG + KPLYVA+AQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 236 TKRERTSYL 244
K +R + L
Sbjct: 373 RKEDRRAKL 381
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 100/195 (51%), Gaps = 14/195 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+ +L+ FS FG I S K+V+ ++G+SKGYGFV + +E A AIEK+
Sbjct: 104 FIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINN 163
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +Y K ++ NLY+KN + D +LK
Sbjct: 164 MIIRDRVVY--------------VGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLK 209
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G I S +M+ + G SKGFGFVCF +PD A A+ T++G + LY A AQ
Sbjct: 210 EMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQR 269
Query: 237 KRERTSYLRIMYAKQ 251
K ER L+ KQ
Sbjct: 270 KEERQEELKQRLEKQ 284
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L + + L FS+ G + S++V + S GYG+V + + A A+E L
Sbjct: 16 YVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLN 75
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++ G R RI S D + N+++KN++ +++ EL
Sbjct: 76 YESLMG--------RPIRIMWSQR----------DPSLRKSGKGNIFIKNLDKSIEQKEL 117
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S KI+ G SKG+GFV F + A RAI +N ++ + +YV
Sbjct: 118 YDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFI 177
Query: 236 TKRERTSYLR 245
K ER S R
Sbjct: 178 PKTERKSQAR 187
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNP 209
++ +++ +LYV +++ V + L+ FS+ G + S ++ R R S G+G+V F +P
Sbjct: 6 ASQGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRH-SLGYGYVNFEDP 64
Query: 210 DEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A +A+ LN +P +RIM++++ P L
Sbjct: 65 KHAEQALEVLNYESLMGRP---------------IRIMWSQRDPSL 95
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 117/189 (61%), Gaps = 3/189 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N DN KL ++F++FG+I+S+ V+ +GKSKG+GFV + + A NA++ ++
Sbjct: 195 YIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHG 254
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+EG LY RA R +E K + + +L+ NLYVKN++D++D+ L
Sbjct: 255 KEIEGRALYC--ARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLYVKNLDDNIDDKRL 312
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M+ SKGFGFVCF+NP++A RA+ +NG + KPLYVA+AQ
Sbjct: 313 EEAFSVHGSITSAKVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQ 372
Query: 236 TKRERTSYL 244
K +R + L
Sbjct: 373 RKEDRRAKL 381
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 100/195 (51%), Gaps = 14/195 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+ +L+ FS FG I S K+V+ ++G+SKGYGFV + +E A AIEK+
Sbjct: 104 FIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINN 163
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +Y K ++ NLY+KN + D +LK
Sbjct: 164 MIIRDRVVY--------------VGKFIPKTERKSQARKVKFNNLYIKNFPPETDNEKLK 209
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G I S +M+ + G SKGFGFVCF +PD A A+ T++G + LY A AQ
Sbjct: 210 EMFNEFGEIKSACVMKDSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQR 269
Query: 237 KRERTSYLRIMYAKQ 251
K ER L+ KQ
Sbjct: 270 KEERQEELKQRLEKQ 284
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L + + L FS+ G + S++V + S GYG+V + + A A+E L
Sbjct: 16 YVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEVLN 75
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++ G R RI S D + N+++KN++ +++ EL
Sbjct: 76 YESLMG--------RPIRIMWSQR----------DPSLRKSGKGNIFIKNLDKSIEQKEL 117
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S KI+ G SKG+GFV F + A RAI +N ++ + +YV
Sbjct: 118 YDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFI 177
Query: 236 TKRERTSYLR 245
K ER S R
Sbjct: 178 PKTERKSQAR 187
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 153 TEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPD 210
++ +++ +LYV +++ V + L+ FS+ G + S ++ R R S G+G+V F +P
Sbjct: 7 SQGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRH-SLGYGYVNFEDPK 65
Query: 211 EANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A +A+ LN +P +RIM++++ P L
Sbjct: 66 HAEQALEVLNYESLMGRP---------------IRIMWSQRDPSL 95
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 5/226 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D KL ++FSK+G+I S+ V+ +GK KG+GFV Y+ E+A A++ L
Sbjct: 246 FVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDLNE 305
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +EG EL RA + E ++ + L + + NLYVKNI +++ + L+
Sbjct: 306 SILEGTELKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEELTDEGLR 365
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+F+Q G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA+AQ
Sbjct: 366 AHFAQFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQR 425
Query: 237 KRERTSYLRIMYAKQGPGL-----ASTNFPVHPTLYQRALQVYQAP 277
K +R + L Y ++ L A+ P +YQ Q Y P
Sbjct: 426 KEDRRAQLASQYMQRLATLRMGQQAAGGVPGMTQIYQPGQQGYYVP 471
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 107/194 (55%), Gaps = 14/194 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV DG SKGYGFV + T+ SA AIEK
Sbjct: 153 FIKNLDRVIDNKSIYDTFSLFGNILSCKVATDDDGNSKGYGFVHFETEASAQTAIEK--- 209
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ Q A +K L + + N++VKN + +DE +LK
Sbjct: 210 --VNGMLLSDKKVFVGKFQPRAQ----RMKELGESGLKYT---NVFVKNFGEHLDEAKLK 260
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI--A 234
+ FS+ G I+S +M G KGFGFV +++P+ A++A++ LN + L +++ A
Sbjct: 261 EMFSKYGEINSAVVMTDAEGKPKGFGFVAYADPEAASKAVDDLNESILEGTELKLSVCRA 320
Query: 235 QTKRERTSYLRIMY 248
Q K ER++ L+ Y
Sbjct: 321 QKKSERSAELKRKY 334
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 19/186 (10%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L + FS G + S +V + S GY +V + A A++ +
Sbjct: 68 DLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEI 127
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+ G R RI S D + N+++KN++ +D +
Sbjct: 128 IHG--------RPMRIMWSQR----------DPAARRAGNGNIFIKNLDRVIDNKSIYDT 169
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
FS G I S K+ + G SKG+GFV F A AI +NG+L K ++V Q +
Sbjct: 170 FSLFGNILSCKVATDDDGNSKGYGFVHFETEASAQTAIEKVNGMLLSDKKVFVGKFQPRA 229
Query: 239 ERTSYL 244
+R L
Sbjct: 230 QRMKEL 235
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 19/98 (19%)
Query: 139 SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-I 197
S +LY+ +L DVTE +L + FS G + S+++ R N +
Sbjct: 60 SMASLYIGDLHGDVTESMLFEK------------------FSMAGPVLSIRVCRDNTSRL 101
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
S G+ +V F P +A RA++T+N + H +P+ + +Q
Sbjct: 102 SLGYAYVNFQQPADAERALDTMNFEIIHGRPMRIMWSQ 139
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 161/347 (46%), Gaps = 74/347 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA +DN K +IF FG + S + Q+GKS+G+GFV + ESALNA++++
Sbjct: 242 YVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMND 301
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++G +LY GR Q+ + +K L + E L K NL+VKN++D +D
Sbjct: 302 KEIDGQKLYV-----GRAQKKRERLD-ELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDS 355
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G I+S ++M + G SKGFGFVCFS+P+EA +AI +N + KPLYVA
Sbjct: 356 EKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVA 415
Query: 233 IAQTKRERTSYL----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF--- 279
+AQ K R S L R+ A G+ P + + Q PGF
Sbjct: 416 LAQRKDVRRSQLEQQIQARNQMRMQNAAAAAGM--------PGQFMSPMFYGQQPGFFPP 467
Query: 280 --RHGG----------MIPNGFSSPPPSPLFLTRAG------------------------ 303
R G M+P G PPP + RAG
Sbjct: 468 NGRGGAQGPFPPNPQMMMPRGGQMPPPQGQW-PRAGPNGQPVPVYGMPPVYGGEFNGPNG 526
Query: 304 --QAAANNLTNGNQRAAANN----SMLAVASPDERKDILGQGLYPLV 344
Q N NQ+ ++++ D++K ILG+ LYP +
Sbjct: 527 QRQQRGAYPPNRNQKGGRPQRDLAAIISTVPVDQQKRILGEELYPKI 573
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV + G+SK +GFV Y T E+A AIE +
Sbjct: 149 FIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNG 208
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E++ + R +ES + + + T N+YVKN+ +VD + +
Sbjct: 209 MLLNDREVFVGKHVSKRDRESK------FEEMKANFT------NVYVKNLAPEVDNAKFE 256
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G ++SV + G S+GFGFV F N + A A+ +N + LYV AQ
Sbjct: 257 EIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQK 316
Query: 237 KRERTSYLRIMY 248
KRER L+ +Y
Sbjct: 317 KRERLDELKRLY 328
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G Q S + V +D KS GY +V + AIE+
Sbjct: 61 YVGELNPSVNEALLFEIFSPIG--QVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEE 118
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + V+G R RI S +L D N+++KN++ +D
Sbjct: 119 LNYSLVDG--------RPCRIMWSQRDPSLRRNG----------DGNIFIKNLHPAIDNK 160
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ G SK FGFV + + A AI +NG+L + + ++V
Sbjct: 161 ALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 220
Query: 234 AQTKRERTSYLRIMYA 249
+KR+R S M A
Sbjct: 221 HVSKRDRESKFEEMKA 236
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 26/121 (21%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDEANRAIN 217
LYV +N V+E L + FS G +SS+++ R ++K G+ +V F + +RAI
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRD--AVTKKSLGYAYVNFHKHADGSRAIE 117
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTN------FPVHPTLYQRAL 271
LN L +P RIM++++ P L +HP + +AL
Sbjct: 118 ELNYSLVDGRP---------------CRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKAL 162
Query: 272 Q 272
Sbjct: 163 H 163
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 170/383 (44%), Gaps = 100/383 (26%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F K+G S KV+ GKSKG+GFV + E A A+E++
Sbjct: 194 YIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G L+ GR Q+ A +K + + +E L + NLY+KN++D +D+
Sbjct: 254 KDINGKMLFV-----GRAQKKAE-RQAELKRRFEQLKQERLSRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL----------------------ASTNFPVHPTLY--Q 268
+AQ K ER ++L Y ++ G+ A PT Y
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRPTYYAPN 426
Query: 269 RALQVYQAPGFRHGGMIPNGF---------SSPPPSPLFLTRAGQAAANNLTNGNQR--- 316
+ Q+ P ++ GG P GF S P P+ L+ A A+ L QR
Sbjct: 427 QMTQMRPNPRWQQGGR-PQGFQGMPNAMRQSGPRPALRHLSPANAPASRGLPAAAQRVGV 485
Query: 317 -AAANN---------------------------------------------------SML 324
AA N SML
Sbjct: 486 GTAAQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPGVQPLQAPQPAVLVQGQEPLTASML 545
Query: 325 AVASPDERKDILGQGLYPLVKKL 347
A A P E+K +LG+ L+PL++ +
Sbjct: 546 AAAPPQEQKQMLGERLFPLIQAM 568
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F +EAN+A+ +NG + K L+V AQ
Sbjct: 209 ELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KAERQAELK 277
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 20/214 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + +D +L +FS+FG++QS KV+ +G+S+G+GFV + E A A++ +
Sbjct: 194 YVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ A + +K + + +E ++ NLYVKN++D +++
Sbjct: 254 KEVSGQLLYV-----GRAQKRAERQS-ELKRRFEQMKQERQNRYQGVNLYVKNLDDSIND 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ FS G+I+S K+M T SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 ERLKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
+AQ K ER + L Y ++ P HP L
Sbjct: 367 LAQRKEERKAILTNQYRRR---------PSHPVL 391
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 110/194 (56%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + L N+YVKN++ +VDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRQKREA----ELGARALGFT--------NIYVKNLHANVDEQRLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR + G S+GFGFV F +EA +A++ +NG + LYV AQ
Sbjct: 209 DLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
+ ER S L+ + +
Sbjct: 269 RAERQSELKRRFEQ 282
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 20/176 (11%)
Query: 70 LHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L+++FS G+I S +V +S GY ++ + A A++ + ++G +
Sbjct: 27 LYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPI---- 82
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
RI S L + N+++KN+ + +D L FS G I S
Sbjct: 83 ----RIMWSHRDPGLRKSGMG----------NIFIKNLENSIDNKALYDTFSTFGSILSS 128
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
K++ G S+GFGFV F + A +AINT+NG+L + + ++V +++++R + L
Sbjct: 129 KVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAEL 183
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 38/121 (31%)
Query: 138 ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TN 194
S ++LYV +L DVTE + L + FS G I S+++ R T
Sbjct: 8 CSLSSLYVGDLHPDVTESM------------------LYEMFSPIGNILSIRVCRDVATR 49
Query: 195 RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPG 254
R + G+ ++ F P +A RA++T+N + +P +RIM++ + PG
Sbjct: 50 RSL--GYAYINFQQPADAERALDTMNFEVIKGQP---------------IRIMWSHRDPG 92
Query: 255 L 255
L
Sbjct: 93 L 93
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 20/214 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + +D +L +FS+FG++QS KV+ +G+S+G+GFV + E A A++ +
Sbjct: 194 YVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ A + +K + + +E ++ NLYVKN++D +++
Sbjct: 254 KEVSGQLLYV-----GRAQKRAERQS-ELKRRFEQMKQERQNRYQGVNLYVKNLDDSIND 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ FS G+I+S K+M T SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 ERLKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
+AQ K ER + L Y ++ P HP L
Sbjct: 367 LAQRKEERKAILTNQYRRR---------PSHPVL 391
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + L N+YVKN++ +VDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRQKREA----ELGARALGFT--------NIYVKNLHANVDEQRLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR + G S+GFGFV F +EA +A++ +NG + LYV AQ
Sbjct: 209 DLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER S L+
Sbjct: 269 RAERQSELK 277
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L+++FS G+I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ + +D L
Sbjct: 74 FEVIKGQPI--------RIMWSHRDPGLRKSGMG----------NIFIKNLENSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++++R + L
Sbjct: 175 SRQKREAEL 183
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 38/121 (31%)
Query: 138 ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TN 194
S ++LYV +L DVTE + L + FS G I S+++ R T
Sbjct: 8 CSLSSLYVGDLHPDVTESM------------------LYEMFSPIGNILSIRVCRDVATR 49
Query: 195 RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPG 254
R + G+ ++ F P +A RA++T+N + +P +RIM++ + PG
Sbjct: 50 RSL--GYAYINFQQPADAERALDTMNFEVIKGQP---------------IRIMWSHRDPG 92
Query: 255 L 255
L
Sbjct: 93 L 93
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 20/214 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + +D +L +FS+FG++QS KV+ +G+S+G+GFV + E A A++ +
Sbjct: 194 YVKNLHANVDEQRLQDLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ A + +K + + +E ++ NLYVKN++D +++
Sbjct: 254 KEVSGQLLYV-----GRAQKRAERQS-ELKRRFEQMKQERQNRYQGVNLYVKNLDDSIND 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ FS G+I+S K+M T SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 ERLKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
+AQ K ER + L Y ++ P HP L
Sbjct: 367 LAQRKEERKAILTNQYRRR---------PSHPVL 391
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + L N+YVKN++ +VDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRQKREA----ELGARALGFT--------NIYVKNLHANVDEQRLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR + G S+GFGFV F +EA +A++ +NG + LYV AQ
Sbjct: 209 DLFSQFGNMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER S L+
Sbjct: 269 RAERQSELK 277
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 90/189 (47%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L+++FS G+I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ + +D L
Sbjct: 74 FEVIKGQPI--------RIMWSHRDPGLRKSGMG----------NIFIKNLENSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++++R + L
Sbjct: 175 SRQKREAEL 183
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 38/121 (31%)
Query: 138 ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TN 194
S ++LYV +L DVTE + L + FS G I S+++ R T
Sbjct: 8 CSLSSLYVGDLHPDVTESM------------------LYEMFSPIGNILSIRVCRDVATR 49
Query: 195 RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPG 254
R + G+ ++ F P +A RA++T+N + +P +RIM++ + PG
Sbjct: 50 RSL--GYAYINFQQPADAERALDTMNFEVIKGQP---------------IRIMWSHRDPG 92
Query: 255 L 255
L
Sbjct: 93 L 93
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D +L +IF KFG S KV+ G+SKG+GFV + E A NAI+ +
Sbjct: 293 YIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNG 352
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++YA RA + E + + + L + NLY+KN++DD+D+ L+
Sbjct: 353 KELNGRQIYAG--RAQKKLERQTQLQRHFEQLKQNRIVRYQGVNLYIKNLDDDIDDENLR 410
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M N G SKGFGFVCFS P+EA A+ +NG L KPLYVA+AQ
Sbjct: 411 KEFSSFGTITSAKVM-MNNGRSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALAQR 469
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + ST P
Sbjct: 470 KEERKAHLANQYVQRMARIRSTATPT 495
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ FS FG+I S KV+ +G SKGYGFV + +ESA AI+K+
Sbjct: 201 FVKNLEKSINNKSLYDAFSSFGNILSCKVITDDNG-SKGYGFVHFEHRESAERAIQKMNG 259
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++++ ++ + +ES L E N+Y+KN +D+DE L
Sbjct: 260 ILLNDLKIFVGHFKSRKDRES---------ELGAQTREFT---NVYIKNFGEDMDEDRLS 307
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+MR + G SKGFGFV F ++A AI+ +NG + + +Y AQ
Sbjct: 308 KIFEKFGPTLSVKVMRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRAQK 367
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 368 KLERQTQLQ 376
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +DN +L +IF +FG S KV+ + G+SKG+GFV Y+T E A A++++
Sbjct: 185 YIKNFGEDMDNARLGEIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDEMNG 244
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +Y RA + E + + + + D NLYVKN++D +D+ L+
Sbjct: 245 KELNGRRIYVG--RAQKKGERQTELKRHFEQIKQDRVTRYQGVNLYVKNLDDTIDDERLR 302
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS G I+S K+M G S+GFGFVCFS PDEA +A+ +NG L KPLYVA+AQ
Sbjct: 303 TEFSPFGTITSAKVMMEG-GHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYVALAQR 361
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 362 KEERQAHLTNQYMRRMANIQTFANPV 387
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S KVV ++G SKGYGFV + TQESA AIEK+
Sbjct: 93 FVKNLEKSIDNRALFDAFSGFGNILSCKVVSDENG-SKGYGFVHFETQESAEKAIEKMNG 151
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ ++++ ++ + +E L + + T N+Y+KN +D+D L
Sbjct: 152 IVLKSLKVFVGHFKSRKERE------LELGARAREFT------NVYIKNFGEDMDNARLG 199
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M RG SKGFGFV ++ ++A RA++ +NG + + +YV AQ
Sbjct: 200 EIFGRFGRALSVKVMTDERGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIYVGRAQK 259
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 260 KGERQTELK 268
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 20/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK-GYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY +V + A +E +
Sbjct: 5 YVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLETMN 64
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L + N++VKN+ +D L
Sbjct: 65 LDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFVKNLEKSIDNRAL 106
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G SKG+GFV F + A +AI +NGI+ ++V +
Sbjct: 107 FDAFSGFGNILSCKVVSDENG-SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFK 165
Query: 236 TKRER 240
+++ER
Sbjct: 166 SRKER 170
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 145/261 (55%), Gaps = 25/261 (9%)
Query: 50 ATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESAL 108
A P+F V NL I + +L + F K+GDI S+ V+ Q G S+ +GFV + + E+A
Sbjct: 234 AVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAA 293
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKN 165
A+EK+ G+ L L GR Q+ + + + + E++ NLY+KN
Sbjct: 294 VAVEKM-----NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKN 348
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++D V++ +LK+ FS+ G ++S K+M ++G+S+GFGFV +SNP+EA A+ +NG +
Sbjct: 349 LDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIG 408
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAK-QGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM 284
+KPLYVA+AQ K ER ++L+ ++ + + PG S PV + GF H
Sbjct: 409 RKPLYVALAQRKEERQAHLQSLFTQIRSPGTMS---PVPSPMS----------GFHH--H 453
Query: 285 IPNGFSSPPPSPLFLTRAGQA 305
P G S P P+F+ GQ
Sbjct: 454 PPGGPMSGPHHPMFIGHNGQG 474
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 107/201 (53%), Gaps = 24/201 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L++ FS FG I S KV + G+SKGYGFVQ+ +E+A AI+KL
Sbjct: 149 FIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 208
Query: 117 ATVEGMELYAPSL--RAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ R R + + SF N+YVKNL ++T++
Sbjct: 209 MLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDD--------------- 253
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
ELK+ F + G ISS +M+ G S+ FGFV F +P+ A A+ +NGI + LY
Sbjct: 254 ---ELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLY 310
Query: 231 VAIAQTKRERTSYLRIMYAKQ 251
V AQ K +R LR + ++
Sbjct: 311 VGRAQKKSDREEELRRKFEQE 331
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ +L +++ L +F++ + + +V +S GY +V ++ E A A+E L
Sbjct: 62 YVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNY 121
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIEL 175
A + R RI S + D + + K N+++KN++ +D L
Sbjct: 122 APIRD--------RPIRIMLS-----------NRDPSTRLSGKGNVFIKNLDASIDNKAL 162
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K ++V
Sbjct: 163 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 222
Query: 236 TKRERT 241
+++R
Sbjct: 223 RRQDRA 228
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 127/242 (52%), Gaps = 12/242 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + ID + ++F +G I S+ + + DGKSKG+GFV Y T E A A++ L
Sbjct: 297 YVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDALNE 356
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
+ G +L+ GR Q+ + + D E + NLY+KNI+DD+D+
Sbjct: 357 KDINGKKLFV-----GRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDMDDE 411
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G I+S KIMR ++G+SKGFGFVCFS PDEA RAI +N + KPLYV++
Sbjct: 412 KLRAEFEPYGTITSSKIMRDDKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVSL 471
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF-RHGGMIPNGFSSP 292
AQ + R L +++ T Y Y APGF GG G++
Sbjct: 472 AQRRDVRRQQLESQISQRNQIRMQQAAAAGLTGYINGPMYYGAPGFPAQGG---RGYAGY 528
Query: 293 PP 294
PP
Sbjct: 529 PP 530
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 97/190 (51%), Gaps = 14/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F FG++ S KV V + G SKGYGFV Y T E+A A
Sbjct: 204 FIKNLDEGIDNKALHDTFVAFGNVLSCKVAVDEQGNSKGYGFVHYETAEAADAA-----I 258
Query: 117 ATVEGMELYAPSLRAGR-IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V+GM L + GR I + L D++ + N+YVKN++ ++DE E
Sbjct: 259 KAVDGMLLNDKKVYVGRHIPRKERQSKL------DEIRAQFT--NIYVKNLDTEIDEDEF 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F G I+S + G SKGFGFV + + A +A++ LN + K L+V AQ
Sbjct: 311 RKLFEPYGTITSAVLNLDADGKSKGFGFVNYETHEMAQKAVDALNEKDINGKKLFVGRAQ 370
Query: 236 TKRERTSYLR 245
+ ER LR
Sbjct: 371 KRNERDEELR 380
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 20/197 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V Y A+E+
Sbjct: 113 YVGELDPSVTEAILFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNSSDGERALEQ 170
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G + RI S D + N+++KN+++ +D
Sbjct: 171 LNYSLIKGKPWHV-----SRIMWSQR----------DPALRKTGQGNIFIKNLDEGIDNK 215
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F G + S K+ +G SKG+GFV + + A+ AI ++G+L + K +YV
Sbjct: 216 ALHDTFVAFGNVLSCKVAVDEQGNSKGYGFVHYETAEAADAAIKAVDGMLLNDKKVYVGR 275
Query: 234 AQTKRERTSYLRIMYAK 250
++ER S L + A+
Sbjct: 276 HIPRKERQSKLDEIRAQ 292
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 35/120 (29%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV LD VTE I L + F+ G ++S+++ R T R +
Sbjct: 111 SLYVGELDPSVTEAI------------------LFEIFNMIGPVASIRVCRDAVTRRSL- 151
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
G+ +V + N + RA+ LN L KP +V+ RIM++++ P L T
Sbjct: 152 -GYAYVNYLNSSDGERALEQLNYSLIKGKPWHVS------------RIMWSQRDPALRKT 198
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 145/261 (55%), Gaps = 25/261 (9%)
Query: 50 ATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESAL 108
A P+F V NL I + +L + F K+GDI S+ V+ Q G S+ +GFV + + E+A
Sbjct: 220 AVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAA 279
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKN 165
A+EK+ G+ L L GR Q+ + + + + E++ NLY+KN
Sbjct: 280 VAVEKM-----NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKN 334
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++D V++ +LK+ FS+ G ++S K+M ++G+S+GFGFV +SNP+EA A+ +NG +
Sbjct: 335 LDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIG 394
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAK-QGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM 284
+KPLYVA+AQ K ER ++L+ ++ + + PG S PV + GF H
Sbjct: 395 RKPLYVALAQRKEERQAHLQSLFTQIRSPGTMS---PVPSPMS----------GFHH--H 439
Query: 285 IPNGFSSPPPSPLFLTRAGQA 305
P G S P P+F+ GQ
Sbjct: 440 PPGGPMSGPHHPMFIGHNGQG 460
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 107/201 (53%), Gaps = 24/201 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L++ FS FG I S KV + G+SKGYGFVQ+ +E+A AI+KL
Sbjct: 135 FIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 194
Query: 117 ATVEGMELYAPSL--RAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ R R + + SF N+YVKNL ++T++
Sbjct: 195 MLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDD--------------- 239
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
ELK+ F + G ISS +M+ G S+ FGFV F +P+ A A+ +NGI + LY
Sbjct: 240 ---ELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLY 296
Query: 231 VAIAQTKRERTSYLRIMYAKQ 251
V AQ K +R LR + ++
Sbjct: 297 VGRAQKKSDREEELRRKFEQE 317
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ +L +++ L +F++ + + +V +S GY +V ++ E A A+E L
Sbjct: 48 YVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNY 107
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIEL 175
A + R RI S + D + + K N+++KN++ +D L
Sbjct: 108 APIRD--------RPIRIMLS-----------NRDPSTRLSGKGNVFIKNLDASIDNKAL 148
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K ++V
Sbjct: 149 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 208
Query: 236 TKRERT 241
+++R
Sbjct: 209 RRQDRA 214
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG +QS KV+ +G+S+G+GFV + E A A++ +
Sbjct: 257 YVKNLHMDMDEQGLQDLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNG 316
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ A + +K + V +E ++ NLYVKN++D +++
Sbjct: 317 KEVRGQLLYV-----GRAQKRAERQS-ELKRRFEQVKQERQNRYQGVNLYVKNLDDSIND 370
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ FS G+I+S K+M T SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 371 ERLKEVFSAYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 429
Query: 233 IAQTKRERTSYLRIMYAKQ--GPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIP 286
+AQ K ER + L Y +Q P L+S P + L + QA + G M P
Sbjct: 430 LAQRKEERKAILTNQYRRQLSRPVLSSFQQPTNYLLSAVSQSTAQAVYYGSGSMAP 485
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV + T E+A AI +
Sbjct: 165 FIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNG 223
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + L N+YVKN++ D+DE L+
Sbjct: 224 MLLNDRKVFVGHFKSRQKREA----ELGARALGFT--------NVYVKNLHMDMDEQGLQ 271
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR + G S+GFGFV F +EA +A++ +NG + LYV AQ
Sbjct: 272 DLFSQFGKMQSVKVMRDSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQK 331
Query: 237 KRERTSYLR 245
+ ER S L+
Sbjct: 332 RAERQSELK 340
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L+++FS G I S +V +S GY ++ + A A++ +
Sbjct: 77 YVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 136
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ + +D L
Sbjct: 137 FEMIKGQPI--------RIMWSHRDPGLRKSGMG----------NIFIKNLENSIDNKAL 178
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 179 YDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFK 237
Query: 236 TKRERTSYL 244
++++R + L
Sbjct: 238 SRQKREAEL 246
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 38/123 (30%)
Query: 136 ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--- 192
++ + ++LYV +L DVTE + L + FS G I S+++ R
Sbjct: 69 QACALSSLYVGDLHPDVTEAM------------------LYEMFSPIGTILSIRVCRDVA 110
Query: 193 TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQG 252
T R + G+ ++ F P +A RA++T+N + +P +RIM++ +
Sbjct: 111 TRRSL--GYAYINFQQPADAERALDTMNFEMIKGQP---------------IRIMWSHRD 153
Query: 253 PGL 255
PGL
Sbjct: 154 PGL 156
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 145/261 (55%), Gaps = 25/261 (9%)
Query: 50 ATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESAL 108
A P+F V NL I + +L + F K+GDI S+ V+ Q G S+ +GFV + + E+A
Sbjct: 220 AVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAA 279
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKN 165
A+EK+ G+ L L GR Q+ + + + + E++ NLY+KN
Sbjct: 280 VAVEKM-----NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKN 334
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++D V++ +LK+ FS+ G ++S K+M ++G+S+GFGFV +SNP+EA A+ +NG +
Sbjct: 335 LDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIG 394
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAK-QGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM 284
+KPLYVA+AQ K ER ++L+ ++ + + PG S PV + GF H
Sbjct: 395 RKPLYVALAQRKEERQAHLQSLFTQIRSPGTMS---PVPSPMS----------GFHH--H 439
Query: 285 IPNGFSSPPPSPLFLTRAGQA 305
P G S P P+F+ GQ
Sbjct: 440 PPGGPMSGPHHPMFIGHNGQG 460
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 107/201 (53%), Gaps = 24/201 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L++ FS FG I S KV + G+SKGYGFVQ+ +E+A AI+KL
Sbjct: 135 FIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 194
Query: 117 ATVEGMELYAPSL--RAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ R R + + SF N+YVKNL ++T++
Sbjct: 195 MLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDD--------------- 239
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
ELK+ F + G ISS +M+ G S+ FGFV F +P+ A A+ +NGI + LY
Sbjct: 240 ---ELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLY 296
Query: 231 VAIAQTKRERTSYLRIMYAKQ 251
V AQ K +R LR + ++
Sbjct: 297 VGRAQKKSDREEELRRKFEQE 317
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ +L +++ L +F++ + + +V +S GY +V ++ E A A+E L
Sbjct: 48 YVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNY 107
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIEL 175
A + R RI S + D + + K N+++KN++ +D L
Sbjct: 108 APIRD--------RPIRIMLS-----------NRDPSTRLSGKGNVFIKNLDASIDNKAL 148
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K ++V
Sbjct: 149 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 208
Query: 236 TKRERT 241
+++R
Sbjct: 209 RRQDRA 214
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 122/207 (58%), Gaps = 5/207 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++DD+D+ L
Sbjct: 254 KELSGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITRYQVV--NLYVKNLDDDIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G S+GFGFVCFS+P+EA +A+ +NGI+ KPLYV++A
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYVSLAH 369
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPV 262
K ER +YL Y ++ G+ + PV
Sbjct: 370 RKEERQAYLTNEYMQRMAGVRAVPNPV 396
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM-- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + + N+Y+KN +D+D+ L
Sbjct: 159 ---NGMLLNDRKVFVGRFKSR--------KEREAELGAKAKEFPNVYIKNFGEDMDDERL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F + G SVK+M G SKGFGFV F ++A +A++ +NG K +YV AQ
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQ 267
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 268 KKVERQTELK 277
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS G I S + V +D +S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRVCRDLITRRSSNYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMEL------YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
+A++ + ++G + + PSLR + N++
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQHDPSLRKSGV------------------------GNIF 102
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
VKN++ ++ L S G I S K++ G SKG+GFV F + A RAI +NG+
Sbjct: 103 VKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGM 161
Query: 223 LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
L + + ++V ++++ER + L AK+ P + NF
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAK-AKEFPNVYIKNF 198
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 113/384 (29%), Positives = 171/384 (44%), Gaps = 101/384 (26%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + E A A+E++
Sbjct: 194 YIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E L + NLY+KN++D +D+
Sbjct: 254 KDINGKMVFV-----GRAQKKVE-RQAELKRKFEQLKQERLSRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGAITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL----------------------ASTNFPVHPTLY--Q 268
+AQ K ER ++L Y ++ G+ A PT Y
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRPTYYAPN 426
Query: 269 RALQVYQAPGFRHGGMIPNGF---------SSPPPSPLFLTRAGQA-AANNLTNGNQR-- 316
+ Q+ P ++ GG P GF S P P+ L AG A A+ L QR
Sbjct: 427 QMTQMRPNPRWQQGGR-PQGFQGMPNAMRQSGPRPALRHLAPAGSAPASRGLPAAAQRVG 485
Query: 317 --AAANN---------------------------------------------------SM 323
AA N SM
Sbjct: 486 VGTAAQNLGPRPPVAAPAPRAVPPYKYASSVRSPHPAVQPLQAPQPAVHVQGQEPLTASM 545
Query: 324 LAVASPDERKDILGQGLYPLVKKL 347
LA A P E+K +LG+ L+PL++ +
Sbjct: 546 LAAAPPQEQKQMLGERLFPLIQAM 569
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M G SKGFGFV F ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 160/346 (46%), Gaps = 72/346 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA +DN K +IF FG + S + Q+GKS+G+GFV + ESALNA++++
Sbjct: 242 YVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMND 301
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
++G +LY GR Q+ + + + E++L NL+VKN++D +D
Sbjct: 302 KEIDGQKLYV-----GRAQKKRERLDELKRLYESTRLEKLLKYQGVNLFVKNLDDSIDSE 356
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F G I+S ++M + G SKGFGFVCFS+P+EA +AI +N + KPLYVA+
Sbjct: 357 KLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVAL 416
Query: 234 AQTKRERTSYL----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF---- 279
AQ K R S L R+ A G+ P + + Q PGF
Sbjct: 417 AQRKDVRRSQLEQQIQARNQMRMQNAAAAAGM--------PGQFMLPMFYGQQPGFFPPN 468
Query: 280 -RHGG----------MIPNGFSSPPPSPLFLTRAG------------------------- 303
R G M+P G PPP + RAG
Sbjct: 469 GRGGAQGPFPPNPQMMMPRGGQMPPPQGQW-PRAGPNGQPVPVYGMPPVYGGEFNGPNGQ 527
Query: 304 -QAAANNLTNGNQRAAANN----SMLAVASPDERKDILGQGLYPLV 344
Q N NQ+ ++++ D++K ILG+ LYP +
Sbjct: 528 RQQRGAYPPNRNQKGGRPQRDLAAIISTVPVDQQKRILGEELYPKI 573
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV + G+SK +GFV Y T E+A AIE +
Sbjct: 149 FIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNG 208
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E++ + R +ES + + + T N+YVKN+ +VD + +
Sbjct: 209 MLLNDREVFVGKHVSKRDRESK------FEEMKANFT------NVYVKNLAPEVDNAKFE 256
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G ++SV + G S+GFGFV F N + A A+ +N + LYV AQ
Sbjct: 257 EIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQK 316
Query: 237 KRERTSYLRIMY 248
KRER L+ +Y
Sbjct: 317 KRERLDELKRLY 328
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G Q S + V +D KS GY +V + AIE+
Sbjct: 61 YVGELNPSVNEALLFEIFSPIG--QVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEE 118
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + V+G R RI S +L D N+++KN++ +D
Sbjct: 119 LNYSLVDG--------RPCRIMWSQRDPSLRRNG----------DGNIFIKNLHPAIDNK 160
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ G SK FGFV + + A AI +NG+L + + ++V
Sbjct: 161 ALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 220
Query: 234 AQTKRERTSYLRIMYA 249
+KR+R S M A
Sbjct: 221 HVSKRDRESKFEEMKA 236
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 26/121 (21%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDEANRAIN 217
LYV +N V+E L + FS G +SS+++ R ++K G+ +V F + +RAI
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRD--AVTKKSLGYAYVNFHKHADGSRAIE 117
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTN------FPVHPTLYQRAL 271
LN L +P RIM++++ P L +HP + +AL
Sbjct: 118 ELNYSLVDGRP---------------CRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKAL 162
Query: 272 Q 272
Sbjct: 163 H 163
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 112/200 (56%), Gaps = 3/200 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ +DGKSKG+GFV Y T E+A A++ L
Sbjct: 186 YVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ +G LY RA + E + L E + NLYVKN++D +D+ L
Sbjct: 246 KDMGDGKTLYVA--RAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERL 303
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCF +P+EA A+ LNG + KPLYVA+AQ
Sbjct: 304 RKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQ 363
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K ER ++L Y + G+
Sbjct: 364 RKEERKAHLASQYMRHMTGM 383
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 93 FIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGTSKGYGFVHFETEEAANTSIDKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFTEDFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK++F G I+S K+M G SKGFGFV + + A A+ LNG + K LYVA
Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGDGKTLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGTSKGYGFVHFETEEAANTSIDKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D++E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLIRDKP---------------IRIMWSQRDPSL 84
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 147/262 (56%), Gaps = 26/262 (9%)
Query: 50 ATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESAL 108
A P F V NL I + +L + F K+GDI S+ V+ Q G S+ +GFV + + E+A
Sbjct: 233 AVPRFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAA 292
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKN 165
A+EK+ G+ L L GR Q+ + + + + E++ NLY+KN
Sbjct: 293 VAVEKM-----NGISLGEDVLYVGRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKN 347
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++D V++ +LK+ FS+ G ++S K+M ++G+S+GFGFV +S+P+EA+RA++ +NG +
Sbjct: 348 LDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIG 407
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAK-QGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM 284
+KPLYVA AQ K ER ++L+ ++ + PG S P+ + PGF H
Sbjct: 408 RKPLYVAFAQRKEERRAHLQTLFTHIRSPGTMS---PIPSPM----------PGFHH--H 452
Query: 285 IPNGFSSPPPSP-LFLTRAGQA 305
P G S P P +++ + GQ
Sbjct: 453 PPGGPMSGPHHPTMYIGQNGQG 474
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 105/198 (53%), Gaps = 18/198 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I S KV + G+SKGYGFVQ+ +E+A AI+KL
Sbjct: 148 FIKNLDPSIDNKALYETFSAFGTILSCKVAMDAVGRSKGYGFVQFEKEETAQAAIDKL-- 205
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE---ILDKNLYVKNINDDVDEI 173
GM L + F +V+ D +E N+YVKN+ ++ +
Sbjct: 206 ---NGMLL----------NDKQVFVGHFVRRQDRSRSESGAVPRFTNVYVKNLPKEITDD 252
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
ELK+ F + G ISS +M+ G S+ FGFV F +P+ A A+ +NGI + LYV
Sbjct: 253 ELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFESPEAAAVAVEKMNGISLGEDVLYVGR 312
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER LR + ++
Sbjct: 313 AQKKSEREEELRRKFEQE 330
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ +L ++D +L +F++ +Q+ +V +S GY +V ++ E A A++ L
Sbjct: 61 YVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMDSLNY 120
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIEL 175
A + R RI S + D + + K N+++KN++ +D L
Sbjct: 121 APIRD--------RPIRIMLS-----------NRDPSTRLSGKGNVFIKNLDPSIDNKAL 161
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K ++V
Sbjct: 162 YETFSAFGTILSCKVAMDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 221
Query: 236 TKRERT 241
+++R+
Sbjct: 222 RRQDRS 227
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 156/328 (47%), Gaps = 53/328 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL ++FSK+G S +V+ GKSKG+GFV + E A A++ +
Sbjct: 181 YIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNG 240
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
+ G ++Y GR Q+ N + + D NLYVKN++D +D+
Sbjct: 241 KELNGRQVYV-----GRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDE 295
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 296 RLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 354
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIP----- 286
AQ K ER ++L Y ++ +A+ +P L YQ A P IP
Sbjct: 355 AQRKEERQAHLTNQYMQR---MATVRAVPNPVLNPYQPA-----PPSGYFMAAIPQTQNR 406
Query: 287 ------NGFSSPPPSPLFLTRAGQAA----ANNLTNGNQRAAAN---------------- 320
N + PSP + A A + N Q A+
Sbjct: 407 AAYYSANQLAQLRPSPRWNDSRECAHSYKYAAGVRNPQQHMASQPQVAMQQPAVLVQGQE 466
Query: 321 ---NSMLAVASPDERKDILGQGLYPLVK 345
SMLA A P E+K +LG+ L+PL++
Sbjct: 467 PLTASMLASAPPQEQKQMLGERLFPLIQ 494
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 89 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 147
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ +LK
Sbjct: 148 MLLNDRKVFVGRFKSRKEREA---------ELGARAREFT---NVYIKNFGEDMDDEKLK 195
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G S+++M + G SKGFGFV F ++A +A++ +NG + + +YV AQ
Sbjct: 196 ELFSKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQK 255
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 256 KGERQNELK 264
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T+ + Q FS G I S +V +S GY +V + A A++ + ++G
Sbjct: 8 TLPKREAQQDFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGR 67
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
L RI S +L + N+++KN++ +D L FS
Sbjct: 68 PL--------RIMWSQRDPSLRKSGVG----------NIFIKNLDKSIDNKALYDTFSAF 109
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G I S K++ G SKG+GFV F + A RAI +NG+L + + ++V ++++ER +
Sbjct: 110 GNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 168
Query: 243 YL 244
L
Sbjct: 169 EL 170
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 146/281 (51%), Gaps = 17/281 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L+ +F +FG I S KV+ + GKSKG+GFV + E A A++++
Sbjct: 169 YIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNG 228
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G +Y GR Q+ + +K+ + VT++ + NLYVKN++D +D+
Sbjct: 229 KELNGKHIYV-----GRAQKKDD-RHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDD 282
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A++ +NG + KPLYVA
Sbjct: 283 ERLQKEFSPFGTITSTKVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVA 341
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGG----MIPNG 288
+AQ K ER ++L Y ++ + S PV+P YQ A Y P+
Sbjct: 342 LAQRKEERQAHLTNQYIQRMASVRSGPNPVNP--YQPASSSYSVAAVPQTQNCVPCCPSQ 399
Query: 289 FSSPPPSPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASP 329
+ P PS ++ + + G AA S L P
Sbjct: 400 IAQPRPSARWIAQGSRPHPFPNVPGAIHPAAPRSSLTTVRP 440
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ FS FG+I S KVV ++G SKG+GFV + T+E+A AIEK+
Sbjct: 77 FIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNG 135
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ T+E N+Y+KN D +D+ L
Sbjct: 136 MLLNDRKVFVGRFKSQKEREAELGTG----------TKEFT--NVYIKNFGDRMDDETLN 183
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G I SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 184 GLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQK 243
Query: 237 KRERTSYLR 245
K +R + L+
Sbjct: 244 KDDRHTELK 252
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+N +D L FS G I S K++ G SKG GFV F + A RAI +
Sbjct: 75 NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKM 133
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 134 NGMLLNDRKVFVGRFKSQKEREAEL 158
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 146/281 (51%), Gaps = 17/281 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L+ +F +FG I S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G +Y GR Q+ + +K+ + VT++ + NLYVKN++D +D+
Sbjct: 254 KELNGKHIYV-----GRAQKKDD-RHTELKHKFEQVTQDKSIRYQGINLYVKNLDDGIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A++ +NG + KPLYVA
Sbjct: 308 ERLQKEFSPFGTITSTKVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGG----MIPNG 288
+AQ K ER ++L Y ++ + S PV+P YQ A Y P+
Sbjct: 367 LAQRKEERQAHLTNQYIQRMASVRSGPNPVNP--YQPASSSYSVAAVPQTQNCVPCCPSQ 424
Query: 289 FSSPPPSPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASP 329
+ P PS ++ + + G AA S L P
Sbjct: 425 IAQPRPSARWIAQGSRPHPFPNVPGAIHPAAPRSSLTTVRP 465
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ FS FG+I S KVV ++G SKG+GFV + T+E+A AIEK+
Sbjct: 102 FIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ T+E N+Y+KN D +D+ L
Sbjct: 161 MLLNDRKVFVGRFKSQKEREAELGTG----------TKEFT--NVYIKNFGDRMDDETLN 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G I SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 GLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQK 268
Query: 237 KRERTSYLR 245
K +R + L+
Sbjct: 269 KDDRHTELK 277
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 24/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + L++ FS G I S +V V+++ +S GY V + A A++
Sbjct: 14 YVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITR--RSLGYASVNFEQPADAERALDT 71
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++G + RI S +L + N+++KN+N +D
Sbjct: 72 MNFDVIKGKPV--------RIMWSQRDPSLRRSGVG----------NVFIKNLNKTIDNK 113
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K++ G SKG GFV F + A RAI +NG+L + + ++V
Sbjct: 114 ALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGR 172
Query: 234 AQTKRERTSYL 244
++++ER + L
Sbjct: 173 FKSQKEREAEL 183
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 139/263 (52%), Gaps = 36/263 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + +L +IF +FG I S V+ +DGKS+ +GFV + E A A+E L
Sbjct: 209 FVKNLSESTLEEELRKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNG 268
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++ + + GR Q+ S + +K+ + +E +DK NLY+KN++D + +
Sbjct: 269 YKLDNKDWFV-----GRAQKK-SEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSISD 322
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS G I+S K+MR G+SKG GFV FSNP+EA+RA++ +NG + KPLYVA
Sbjct: 323 EKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVA 382
Query: 233 IAQTKRERTSYLRI-------------------MYAKQGPGLASTNF---PVHPTLYQRA 270
+AQ K ER + L+ MY GPGL F P L +A
Sbjct: 383 LAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAMLPPQA 442
Query: 271 LQVYQ---APGFR-HGGMIPNGF 289
YQ PG R GG +PN F
Sbjct: 443 GFGYQQQLVPGMRPGGGPMPNFF 465
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 103/190 (54%), Gaps = 16/190 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV V G+SKGYGFVQY ++E+A AIEKL
Sbjct: 118 FIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNG 177
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ ++Y P +R K+ D ++ N++VKN+++ E EL
Sbjct: 178 MLLNDKQVYVGPFVR---------------KHERDMAVDKTRFTNVFVKNLSESTLEEEL 222
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F + G I+SV +M+ G S+ FGFV F N ++A RA+ LNG K +V AQ
Sbjct: 223 RKIFGEFGAITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQ 282
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 283 KKSEREMELK 292
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + + +L+ +F++ G + S +V + SQ +S GYG+V Y + A A+E
Sbjct: 30 YVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQ--RSLGYGYVNYGNPQDAARALEV 87
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + G + RI S D + N+++KN++ +D
Sbjct: 88 LNFTPLHGKPI--------RIMYSNR----------DPTIRRSGNGNIFIKNLDKAIDHK 129
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ + G SKG+GFV + + + A +AI LNG+L + K +YV
Sbjct: 130 ALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGP 189
Query: 234 AQTKRER 240
K ER
Sbjct: 190 FVRKHER 196
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 16/95 (16%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINT 218
+LYV +++ +V + +L F+Q G + SV++ R S G+G+V + NP +A RA+
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
LN H KP +RIMY+ + P
Sbjct: 88 LNFTPLHGKP---------------IRIMYSNRDP 107
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 128/246 (52%), Gaps = 12/246 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +DN +L ++F KFG S KV+ + GKSKG+GFV Y E A A++++
Sbjct: 499 YIKNFGEDMDNDRLTEVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHEDAQRAVDEMNG 558
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
G +Y RA + E + + + + + + NLYVKN++D +D+ L+
Sbjct: 559 KEFNGKRIYV--GRAQKKGERQTELKRHFEQVKQERSSRYQGVNLYVKNLDDSIDDERLR 616
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G S+GFGFVCFS P+EA +A++ +NG L KPLYVA+AQ
Sbjct: 617 KAFSPFGTITSAKVMMEG-GHSRGFGFVCFSAPEEAAKAVSEMNGKLVATKPLYVALAQR 675
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV----HPTLYQRAL-----QVYQAPGFRHGGMIPN 287
KR+R +L Y ++ + + PV P R Q P + G IP
Sbjct: 676 KRDRQVHLTNQYMQRMASFQAMSNPVFSPYQPPPTSRYFMTPLPQPQSRPAYYPYGQIPQ 735
Query: 288 GFSSPP 293
SPP
Sbjct: 736 FRPSPP 741
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG+I S KV+ ++G SKGYGFV + Q++A AIEK+
Sbjct: 407 FIKNLEKSIDNKALYKTFSAFGNILSCKVISDENG-SKGYGFVHFENQQAADKAIEKMNG 465
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++Y ++ + +E L + + T N+Y+KN +D+D L
Sbjct: 466 VRLNNLKVYVGRFKSRKERE------LELGARAREFT------NVYIKNFGEDMDNDRLT 513
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV + ++A RA++ +NG F+ K +YV AQ
Sbjct: 514 EVFGKFGHALSVKVMTDESGKSKGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQK 573
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 574 KGERQTELK 582
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 20/199 (10%)
Query: 43 IDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQY 101
+DV A A P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 305 LDVSGATAIPMASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNF 364
Query: 102 STQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNL 161
A +E + ++G + RI S +L + N+
Sbjct: 365 QQLADAERVLETMNLDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NI 406
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
++KN+ +D L + FS G I S K++ G SKG+GFV F N A++AI +NG
Sbjct: 407 FIKNLEKSIDNKALYKTFSAFGNILSCKVISDENG-SKGYGFVHFENQQAADKAIEKMNG 465
Query: 222 ILFHQKPLYVAIAQTKRER 240
+ + +YV ++++ER
Sbjct: 466 VRLNNLKVYVGRFKSRKER 484
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/253 (37%), Positives = 133/253 (52%), Gaps = 19/253 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G LY RA + E S + L D NLYVKN++D +D+ +L+
Sbjct: 254 KEVSGRLLYVG--RAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQ--------GPGLASTNFPVH---PTLYQRALQ-VYQAPGFRHGGM 284
K ER + L Y ++ GP L S + P P++ Q Q Y A G M
Sbjct: 371 KEERKAILTNQYMQRLSTVRALGGPLLGSFHQPTSYFLPSVPQPPAQAAYYASGL---PM 427
Query: 285 IPNG-FSSPPPSP 296
P +++PPP P
Sbjct: 428 QPTPRWTAPPPRP 440
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E L + ++ N+YVKN++ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREV----ELGARAMEFT--------NIYVKNLHVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G + SVK+MR + G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 209 DLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER S L+
Sbjct: 269 RVERQSELK 277
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 20/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEVIKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ + G S+GFGFV F + A +AI T+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRER 240
++RER
Sbjct: 175 SRRER 179
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGPILSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEVIKGQP---------------IRIMWSQRDPGL 93
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 124/212 (58%), Gaps = 11/212 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+V ++G S+G+GFV + E A A+ +
Sbjct: 179 YVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGFVNFEKHEEAQKAVNSMNG 238
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G LY GR Q+ +K + + +E +++ NLYVKN++D +D+
Sbjct: 239 KALGGRVLYV-----GRAQKRTERQG-ELKRRFEQMKQERVNRYQGVNLYVKNLDDVIDD 292
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 293 EKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 351
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHP 264
+AQ K ER + L Y ++ L + N PV P
Sbjct: 352 LAQRKEERKAILTNQYMQRISVLRNINGPVFP 383
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 85 VVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLY 144
VV + S+G+GFV + TQE+A AI +T+ GM L + G +
Sbjct: 114 AVVCDENGSRGFGFVHFETQEAANQAI-----STMNGMLLNDRKVFVGHFKSR------- 161
Query: 145 VKNLDDDVTEEILD-KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGF 203
+ + ++ L+ N+YVKN +DVD+ L++ FS+ G SVK+M G S+GFGF
Sbjct: 162 -QEREAELGARALEFTNIYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVDENGHSRGFGF 220
Query: 204 VCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAK 250
V F +EA +A+N++NG + LYV AQ + ER L+ + +
Sbjct: 221 VNFEKHEEAQKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQ 267
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 111/200 (55%), Gaps = 3/200 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL F +G I S KV+ +DGKSKG+GFV + T E+A A++ L
Sbjct: 186 YVKNFTEEFDDEKLKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ EG LY RA + E + L E + NLYVKN++D +D+ L
Sbjct: 246 KDMGEGKSLYVA--RAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERL 303
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCF +P+EA A+ LNG + KPLYVA+AQ
Sbjct: 304 RKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQ 363
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K ER ++L Y + G+
Sbjct: 364 RKEERKAHLASQYMRHMTGM 383
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + + G SKGYGFV + T+E+A +IEK+
Sbjct: 93 FIKNLDRQIDNKAIYDTFSAFGNILSCKVALDEKGNSKGYGFVHFETEEAANTSIEKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN ++ D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFTEEFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK +F G I+S K+M G SKGFGFV F + A A+ LNG + K LYVA
Sbjct: 199 LKDFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I +
Sbjct: 91 NVFIKNLDRQIDNKAIYDTFSAFGNILSCKVALDEKGNSKGYGFVHFETEEAANTSIEKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D++E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLIRNKP---------------IRIMWSQRDPSL 84
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 117/196 (59%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++DD+D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDDIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKRTFEQ 282
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 37/218 (16%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKG---YGFVQYSTQESAL 108
PT + +L + L++ FS G I S + V +D ++G Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRVCRDLITRGSSNYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
+A++ + ++G L PSLR + N++VKNLD + +K LY
Sbjct: 67 HALDTMNFDVIKGKPLRIMWSQRDPSLR------KSGMGNIFVKNLDKSIN----NKALY 116
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
D V S G I S ++ G SKG+GFV F + A RAI +NG+
Sbjct: 117 -----DTV---------SAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGM 161
Query: 223 LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
L + + ++V ++++ER + L AK+ P + NF
Sbjct: 162 LLNGRKVFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDDIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAYLTNEYMQRM 386
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 121/207 (58%), Gaps = 5/207 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++DD+D+ L
Sbjct: 254 KELSGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITRYQVV--NLYVKNLDDDIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPV 262
K ER +YL Y ++ + + PV
Sbjct: 370 RKEERQAYLTNEYMQRMASVRAVPNPV 396
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM-- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + + N+Y+KN +D+D+ L
Sbjct: 159 ---NGMLLNDRKVFVGRFKSR--------KEREAELGAKAKEFPNVYIKNFGEDMDDERL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F + G SVK+M G SKGFGFV F ++A +A++ +NG K +YV AQ
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQ 267
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 268 KKVERQTELK 277
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS G I S + V +D +S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRVCRDLITRRSSNYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMEL------YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
+A++ + ++G + + PSLR + N++
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQHDPSLRKSGV------------------------GNIF 102
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
VKN++ ++ L S G I S K++ G SKG+GFV F + A RAI +NG+
Sbjct: 103 VKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGM 161
Query: 223 LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
L + + ++V ++++ER + L AK+ P + NF
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAK-AKEFPNVYIKNF 198
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 2/201 (0%)
Query: 50 ATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESAL 108
+P F V NL+ TI N L ++F +G I S+ V+ Q GKS+G+GFV + +SA
Sbjct: 219 GSPKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAA 278
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
A+EKL T + + RA R E + + + E + NLY+KN++D
Sbjct: 279 AAVEKLNGTTAHDDKAWYVG-RAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDD 337
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++++++LK+ FS+ G I+S K+M ++G+SKG GFV FS P+EA+RA+ +NG + +KP
Sbjct: 338 NINDVKLKELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKP 397
Query: 229 LYVAIAQTKRERTSYLRIMYA 249
LYVAIAQ K ER + L+ +A
Sbjct: 398 LYVAIAQRKEERKARLQAHFA 418
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 101/200 (50%), Gaps = 23/200 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ST+DN LH+ F+ FG + S KV V +G+SKGYGFVQ+ +ESA AI L
Sbjct: 136 FIKNLDSTLDNKLLHETFAAFGTVLSCKVAVDSNGQSKGYGFVQFENEESAERAISFLDG 195
Query: 117 ATVEGMELY----APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y R S F N+YVKNL + +T E L+K
Sbjct: 196 MCLNDKQVYVGFFVRQQERTRTNGSPKFTNVYVKNLSETITNEDLEK------------- 242
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH-QKPLYV 231
F G I+S +M+ G S+GFGFV F +PD A A+ LNG H K YV
Sbjct: 243 -----VFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLNGTTAHDDKAWYV 297
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
AQ K ER + L+ + ++
Sbjct: 298 GRAQRKSEREAELKAKFEQE 317
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 31/192 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK-GYGFVQYSTQESALNAIEKLY 115
+ +L ++ +L+ +FS+ + S +V Q +S GYG+V +S + A NA++ L
Sbjct: 48 YVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKALN 107
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ G + PS+R + + N+++KNLD LD L
Sbjct: 108 FTPLNGKPIRIMFSHRDPSIR------KSGYGNVFIKNLDS-----TLDNKL-------- 148
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
L + F+ G + S K+ + G SKG+GFV F N + A RAI+ L+G+ + K +
Sbjct: 149 -----LHETFAAFGTVLSCKVAVDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQV 203
Query: 230 YVAIAQTKRERT 241
YV ++ERT
Sbjct: 204 YVGFFVRQQERT 215
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 18/103 (17%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAIN 217
+LYV ++ +V+E +L FSQ + SV++ R T R S G+G+V FSNP +A A+
Sbjct: 46 SLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRS-SLGYGYVNFSNPQDAANAMK 104
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
LN + KP +RIM++ + P + + +
Sbjct: 105 ALNFTPLNGKP---------------IRIMFSHRDPSIRKSGY 132
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 128/247 (51%), Gaps = 24/247 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ +DGKSKG+GFV Y T E+A A++ L
Sbjct: 186 YVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ E LY +A R QE F L K D + NLYVKN++D +D+
Sbjct: 246 KDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDS-----VFGVNLYVKNLDDTIDD 300
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M G SKGFGFVCF +P+EA A+ LNG + KPLYVA
Sbjct: 301 ERLRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVA 360
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
+AQ K ER ++L Y + G+ Q+ Q++Q P G +P +
Sbjct: 361 LAQRKEERKAHLASQYMRHMTGMR----------MQQLGQMFQ-PNTTGGFFVP----TI 405
Query: 293 PPSPLFL 299
PPS F
Sbjct: 406 PPSQRFF 412
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + + G SKGYGFV + T+E+A +I+++
Sbjct: 93 FIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANMSIDRVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFTEDFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK++F G I+S K+M G SKGFGFV + + A A+ LNG + K LYVA
Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANMSIDRV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D++E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLIRNKP---------------IRIMWSQRDPSL 84
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 121/201 (60%), Gaps = 10/201 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NLA + + +L IF++ G I S+ V+ DGKSK +GFV + + + A A+E L
Sbjct: 194 FVKNLAESTTDEELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++G E Y G+ Q+ S L +K + +E +DK NLY+KN++D +++
Sbjct: 254 KKIDGEEWYV-----GKAQKK-SERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSIND 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS G I+S K+MR GIS+G GFV FS P+EA+RA+ +NG + KPLYVA
Sbjct: 308 EKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMLISKPLYVA 367
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K ER + L+ +++ P
Sbjct: 368 LAQRKEERRARLQAQFSQMRP 388
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV G+SKGYGFVQ+ ++E+A NAI+KL
Sbjct: 103 FIKNLDKGIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNG 162
Query: 117 ATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
V ++Y + ++ A FNN++VKNL + T+E
Sbjct: 163 MLVNDKQVYVGHFLRKQDRDGALYSIKFNNVFVKNLAESTTDE----------------- 205
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
ELK F++ G I+S +MR G SK FGFV F + D+A +A+ LNG + YV
Sbjct: 206 -ELKNIFAEHGAITSAVVMRDADGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVG 264
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 265 KAQKKSERELELK 277
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 22/195 (11%)
Query: 54 FIP---FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALN 109
F+P + +L + + +L+ +F++ G + S +V +S GYG+V YS + A
Sbjct: 9 FVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAAR 68
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
A++ L + + RI S + D + + + N+++KN++
Sbjct: 69 ALDVLNFTPLNNKPI--------RIMYS---------HRDPSIRKSGM-ANIFIKNLDKG 110
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D L FS G I S K+ G SKG+GFV F + + A AI+ LNG+L + K +
Sbjct: 111 IDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQV 170
Query: 230 YVAIAQTKRERTSYL 244
YV K++R L
Sbjct: 171 YVGHFLRKQDRDGAL 185
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 20/104 (19%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDE 211
+ + +LYV +++ +V + +L F+Q G + SV++ R T R + G+G+V +SNP +
Sbjct: 8 QFVPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSL--GYGYVNYSNPQD 65
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A RA++ LN + KP +RIMY+ + P +
Sbjct: 66 AARALDVLNFTPLNNKP---------------IRIMYSHRDPSI 94
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 128/247 (51%), Gaps = 24/247 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ +DGKSKG+GFV Y T E+A A++ L
Sbjct: 186 YVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ E LY +A R QE F L K D + NLYVKN++D +D+
Sbjct: 246 KDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDS-----VFGVNLYVKNLDDTIDD 300
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M G SKGFGFVCF +P+EA A+ LNG + KPLYVA
Sbjct: 301 ERLRKDFSMYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVA 360
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
+AQ K ER ++L Y + G+ Q+ Q++Q P G +P +
Sbjct: 361 LAQRKEERKAHLASQYMRHMTGMR----------MQQLGQMFQ-PNTTGGFFVP----TI 405
Query: 293 PPSPLFL 299
PPS F
Sbjct: 406 PPSQRFF 412
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 101/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + + G SKGYGFV + T+E+A +I+++
Sbjct: 93 FIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANTSIDRVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFTEDFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK++F G I+S K+M G SKGFGFV + + A A+ LNG + K LYVA
Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYGFVHFETEEAANTSIDRV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D++E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLIRNKP---------------IRIMWSQRDPSL 84
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 135/267 (50%), Gaps = 24/267 (8%)
Query: 41 ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQ 100
A ID + T FI NL ++D+ K QI +G+I S+ V + G S+G+GFV
Sbjct: 209 AKIDEQKSQFTNVFI---KNLDVSVDDEKFKQILEPYGEILSAVVQKDEQGNSRGFGFVN 265
Query: 101 YSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK- 159
Y E A A+E L V+G +++A R Q+ +N + E++
Sbjct: 266 YKNHEEAAKAVESLNEVEVDGKKIFA-----ARAQKKNEREEELRRNYEQAKLEKLAKYA 320
Query: 160 --NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
NLYVKN++DD D+ L F G I+S KIMR +G SKGFGFVCFS+PDEA +A++
Sbjct: 321 GVNLYVKNLDDDFDDERLVGEFEPFGTITSAKIMRDEKGTSKGFGFVCFSSPDEATKAVS 380
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ---------GPGLASTNF-PVHPTLY 267
L+G + KPLYV++AQ + R L A++ G+ + F P P Y
Sbjct: 381 ELSGKMIGSKPLYVSLAQRRDVRRQQLESQIAQRNQLRLQHQAAAGVPISGFMPGAPMYY 440
Query: 268 QRALQVYQAPGFRHGGMIPNGFSSPPP 294
Q Y PG R P GF+ P P
Sbjct: 441 QPPPGAY--PGGRSMYGQP-GFAPPRP 464
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 99/200 (49%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG++ S KV ++G S+GYGFV Y ESA AI+ +
Sbjct: 129 FIKNLDEAIDNKALHDTFAAFGNVLSCKVATDENGNSRGYGFVHYENGESASAAIQHVNG 188
Query: 117 ATVEGMELY-----APSLRAGRIQESAS-FNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y + R +I E S F N+++KNLD V +E
Sbjct: 189 MLLNDKKVYVGHHVSKKERQAKIDEQKSQFTNVFIKNLDVSVDDE--------------- 233
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ KQ G I S + + +G S+GFGFV + N +EA +A+ +LN + K ++
Sbjct: 234 ---KFKQILEPYGEILSAVVQKDEQGNSRGFGFVNYKNHEEAAKAVESLNEVEVDGKKIF 290
Query: 231 VAIAQTKRERTSYLRIMYAK 250
A AQ K ER LR Y +
Sbjct: 291 AARAQKKNEREEELRRNYEQ 310
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L T+ L +IF+ G + S + V +D +S GY +V Y + A+E+
Sbjct: 41 YVGELDPTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNLQDGERALEQ 98
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++ RA RI S D + N+++KN+++ +D
Sbjct: 99 LNYSLIKN--------RACRIMWSQR----------DPALRKTGQGNIFIKNLDEAIDNK 140
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G + S K+ G S+G+GFV + N + A+ AI +NG+L + K +YV
Sbjct: 141 ALHDTFAAFGNVLSCKVATDENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGH 200
Query: 234 AQTKRERTSYL 244
+K+ER + +
Sbjct: 201 HVSKKERQAKI 211
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/200 (40%), Positives = 111/200 (55%), Gaps = 3/200 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ DGKSKG+GFV Y T E+A A++ L
Sbjct: 186 YIKNFTDEFDDEKLKENFEPYGKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ EG LY RA + E + L E + NLYVKN++D +D+ L
Sbjct: 246 KDMGEGKTLYVA--RAQKKAERQQELKRKFEELKKKRHESVFGVNLYVKNLDDSIDDERL 303
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCF +P+EA A+ LNG + KPLYVA+AQ
Sbjct: 304 RKEFSLYGTITSAKVMTDEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQ 363
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K ER ++L Y + G+
Sbjct: 364 RKEERKAHLASQYMRHMTGM 383
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 93 FIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGHSKGYGFVHFETEEAANTSIDKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+Y+KN D+ D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYIKNFTDEFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK+ F G I+S K+M + G SKGFGFV + + A A+ LNG + K LYVA
Sbjct: 199 LKENFEPYGKITSYKVMSKDDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKTLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGHSKGYGFVHFETEEAANTSIDKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D++E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLVRNKP---------------IRIMWSQRDPSL 84
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 146/264 (55%), Gaps = 27/264 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + ++ + FS FG I + ++ ++ KSKG+GFV + E+A A+E
Sbjct: 219 FVKNLDPEMAEEEIKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVE---- 274
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
T+ +L + ++ GR Q+ A + + ++ E+ NLYVKN++D +D+
Sbjct: 275 -TMNNSQLGSRTIYVGRAQKKAEREQILRRQFEEKRMEQFQKYQGANLYVKNLDDSIDDE 333
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
LKQ FS+ G I+S K+MR +GISKGFGFVCF++P+EA+RA NG++ + KP+YVA+
Sbjct: 334 TLKQEFSRYGNITSAKVMRDEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAM 393
Query: 234 AQTKRERTSYLRIMYAKQGPGL--------ASTNFPVH--------PTLYQRALQVYQA- 276
AQ K R + L+ YA++ GL A+ PV+ P + QR +YQ
Sbjct: 394 AQRKEIRQAQLQQQYAQRMSGLMPPPGAQVAAAYPPVYYAAPPALLPQVPQRQGLMYQPV 453
Query: 277 --PGFRHGGMIPNGFSSPPPSPLF 298
PG+R G + P G S P P +
Sbjct: 454 MRPGWRTGPLAPPGRPSLQPLPPY 477
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 107/199 (53%), Gaps = 23/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F FG I S K+ QDG+SKGYGFV + T E+A AIEK+
Sbjct: 129 FIKNLDESIDNKALHDTFIAFGPILSCKIA-HQDGRSKGYGFVHFETDEAANLAIEKVNG 187
Query: 117 ATVEGMELYAPSL--RAGRIQESAS--FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ G +++ R+ R+ + F N++VKNLD ++ EE
Sbjct: 188 MQLVGKKVFVAKFVKRSDRLAATGETKFTNVFVKNLDPEMAEE----------------- 230
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
E+K++FS G+I++V IM+ SKGFGFV F +P+ A A+ T+N + +YV
Sbjct: 231 -EIKEHFSTFGVITNVVIMKDENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVG 289
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER LR + ++
Sbjct: 290 RAQKKAEREQILRRQFEEK 308
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 24/179 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ +L T+ +L IFS+ G + S V V +D +S GYG+V YS+ A+ A+E
Sbjct: 41 YVGDLDETVAETQLFTIFSQMGLVTS--VRVCRDAVTRRSLGYGYVNYSSGADAVRAMEA 98
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + G + RI S D T + N+++KN+++ +D
Sbjct: 99 LNYTPINGKTI--------RIMWSHR----------DPSTRKSGVGNIFIKNLDESIDNK 140
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L F G I S KI + G SKG+GFV F + AN AI +NG+ K ++VA
Sbjct: 141 ALHDTFIAFGPILSCKIAHQD-GRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVA 198
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 5/64 (7%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++++ V E +L FSQ G+++SV++ R T R + G+G+V +S+ +A RA+
Sbjct: 39 SLYVGDLDETVAETQLFTIFSQMGLVTSVRVCRDAVTRRSL--GYGYVNYSSGADAVRAM 96
Query: 217 NTLN 220
LN
Sbjct: 97 EALN 100
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 117/196 (59%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++DD+D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDDIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 QKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKRTFEQ 282
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 37/218 (16%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKG---YGFVQYSTQESAL 108
PT + +L + L++ FS G I S + V +D ++G Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRVCRDLITRGSSNYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
+A++ + ++G L PSLR + N++VKNLD + +K LY
Sbjct: 67 HALDTMNFDVIKGKPLRIMWSQRDPSLR------KSGMGNIFVKNLDKSIN----NKALY 116
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
D V S G I S ++ G SKG+GFV F + A RAI +NG+
Sbjct: 117 -----DTV---------SAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGM 161
Query: 223 LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
L + + ++V ++++ER + L AK+ P + NF
Sbjct: 162 LLNGRKVFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDDIDDERLQKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAYLTNEYMQRM 386
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 117/196 (59%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++DD+D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDDIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 QKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKRTFEQ 282
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 37/218 (16%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKG---YGFVQYSTQESAL 108
PT + +L + L++ FS G I S + V +D ++G Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRVCRDLITRGSSNYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
+A++ + ++G L PSLR + N++VKNLD + +K LY
Sbjct: 67 HALDTMNFDVIKGKPLRIMWSQRDPSLR------KSGMGNIFVKNLDKSIN----NKALY 116
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
D V S G I S ++ G SKG+GFV F + A RAI +NG+
Sbjct: 117 -----DTV---------SAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIEKMNGM 161
Query: 223 LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
L + + ++V ++++ER + L AK+ P + NF
Sbjct: 162 LLNGRKVFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDDIDDERLQKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAYLTNEYMQRM 386
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 144/259 (55%), Gaps = 11/259 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+V ++G+S+G+GFV + E A A+
Sbjct: 194 YVKNFEGDMDDECLQELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAV----- 248
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ + G EL L GR Q+ + + +K + + +E +++ NLYVKN++D +D+
Sbjct: 249 SNMNGKELGGRVLYVGRAQKRSERQS-ELKRRFEQMKQERVNRYQGVNLYVKNLDDIIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
+AQ K ER + L Y ++ L N P+ P L P R P+ +
Sbjct: 367 LAQRKEERKAILTSQYMQRLSTLRGLNGPLFPQPTNYFLPAIPQPPARATFYSPSTVAPV 426
Query: 293 PPSPLFLTRAGQAAANNLT 311
P+P + + + +++ + T
Sbjct: 427 RPAPRWTSYSPRSSCESPT 445
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLDDSIDNKALYDTFSTFGNILSCKVVCDENG-SRGFGFVHFETHEAANQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + L+ N+YVKN D+D+ L+
Sbjct: 161 MLLNDRKVFVGHFKSRQEREA----ELGARALEFT--------NIYVKNFEGDMDDECLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+M G S+GFGFV F +EA +A++ +NG + LYV AQ
Sbjct: 209 ELFSQFGKTLSVKVMVDENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER S L+
Sbjct: 269 RSERQSELK 277
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S L + N+++KN++D +D L
Sbjct: 74 FEVIKG--------RPIRIMWSQRDPGLRKSGIG----------NIFIKNLDDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + AN+AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDENG-SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
+++ER + L
Sbjct: 175 SRQEREAEL 183
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSAAGPIMSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ Q GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNLDDAIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER +YL Y ++ + + PV
Sbjct: 371 KEERQAYLTNEYMQRKASVPAVPNPV 396
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG++ S KVV ++G SKGYGFV + T+E+A AIEK+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENG-SKGYGFVHFETREAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 IPLNDRKVFVGRFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKCKFEQ 282
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 25/212 (11%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS+ G I S +V V++ S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPH--SSNYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A++ + ++G L RI S +L + N++VKN++
Sbjct: 67 HALDTMNFDVIKGKPL--------RIMWSQRDPSLRKSGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G + S K++ G SKG+GFV F + A RAI +NGI + +
Sbjct: 109 SINNKALYDTVSAFGNVLSCKVVCDENG-SKGYGFVHFETREAAERAIEKMNGIPLNDRK 167
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
++V ++++ER + L AK+ P + NF
Sbjct: 168 VFVGRFKSRKEREAELGAR-AKEFPNVYIKNF 198
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 30/282 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A A+ ++
Sbjct: 194 YIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G +Y GR Q+ +K + + +E +++ NLYVKN++D +D+
Sbjct: 254 KEVNGRMVYV-----GRAQKRIERQG-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 DRLRKEFSPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 233 IAQTKRERTSYLR--------IMYAKQGPGLASTNFPVH---PTLYQRALQVYQAPG--- 278
+AQ K ER + L M A GP L S P + PT+ Q + + + +P
Sbjct: 367 LAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNPVA 426
Query: 279 -FRHGGMIPNGFSSP----PPSPLFLTRAGQAAANNLTNGNQ 315
R + S P PP+PL + +N++ Q
Sbjct: 427 PVRPAPQWASHQSRPPQYQPPAPLMRAVPPRRMHSNISTMKQ 468
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FGDI S KVV + G S+GYGFV + TQE+A AI+ +
Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
+ +++ ++ R +E + ++++ N+Y+KN +D+D+ L
Sbjct: 161 MLLNDRKVFVGHFKSRREREL-------------EYGAKVMEFTNVYIKNFGEDMDDKRL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ FS G SVK+M N G S+GFGFV + N +EA +A+ +NG + + +YV AQ
Sbjct: 208 KEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER L+
Sbjct: 268 KRIERQGELK 277
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 17 DLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEV 76
Query: 119 VEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
++G + P LR + N+++KNLDD + +K LY
Sbjct: 77 IKGRPIRIMWSQRDPGLR------KSGVGNVFIKNLDDSID----NKALY---------- 116
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
FS G I S K++ G S+G+GFV F + ANRAI T+NG+L + + ++V
Sbjct: 117 ----DTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVG 171
Query: 233 IAQTKRER 240
+++RER
Sbjct: 172 HFKSRRER 179
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LY+ +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 127/217 (58%), Gaps = 16/217 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + + L ++F +FG+I S+ V+ DGKSK +GF+ + T E A A+E L
Sbjct: 42 YVKNLSESTTDDGLKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNG 101
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ S +K+ + +E +DK NLYVKN++D +D+
Sbjct: 102 KKFDDKEWYV-----GKAQKK-SEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDD 155
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS+ G I+S K+MR GIS+G GFV FS +EA+RA++ +NG + KPLYVA
Sbjct: 156 EKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVA 215
Query: 233 IAQTKRERTSYLRIMYAK-----QGPGLASTNFPVHP 264
+AQ K ER + LR +++ P LA P++P
Sbjct: 216 LAQRKEERRAKLRAQFSQLRPVAMPPSLAP-RMPIYP 251
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 22/143 (15%)
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLY 162
A AI+KL + ++Y + +ES + F N+YVKNL + T++
Sbjct: 1 AQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTGMTKFQNVYVKNLSESTTDD------- 53
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
LK+ F + G I+S +MR G SK FGF+ F ++A +A+ +LNG
Sbjct: 54 -----------GLKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGK 102
Query: 223 LFHQKPLYVAIAQTKRERTSYLR 245
F K YV AQ K ER L+
Sbjct: 103 KFDDKEWYVGKAQKKSEREQELK 125
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 103/361 (28%), Positives = 160/361 (44%), Gaps = 73/361 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV----------------HPTLYQRA--------LQ 272
K ER ++L Y ++ + + PV P RA Q
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQ 430
Query: 273 VYQAPGFRHGGMIPNGFSSPP-------PSPLFLTRAGQAAANNLTNGNQRAAANNS--- 322
+ +P + G P+ F + P P P F T ++ QR A ++
Sbjct: 431 LRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTM 490
Query: 323 ------------------------------------MLAVASPDERKDILGQGLYPLVKK 346
MLA A P E+K +LG+ L+PL++
Sbjct: 491 GPRPAAAAAAATPAVRTVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQA 550
Query: 347 L 347
+
Sbjct: 551 M 551
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L+ + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLHKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 121/207 (58%), Gaps = 5/207 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++DD+D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITRYQVV--NLYVKNLDDDIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 370 RKEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 TLLNDRKVFVGRFKSRKEREA---------ELGAKAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 25/212 (11%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS+ G I S +V V+++ +S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITR--RSSSYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
A++ + ++G + RI S +L + N++VKN++
Sbjct: 67 RALDTMNFDVIKGKPV--------RIMWSQRDPSLRRSGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G I S K++ G SKG+GFV F + A RAI +NG L + +
Sbjct: 109 SINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRK 167
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
++V ++++ER + L AK+ P + NF
Sbjct: 168 VFVGRFKSRKEREAELGAK-AKEFPNVYIKNF 198
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 145/282 (51%), Gaps = 30/282 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A A+ ++
Sbjct: 194 YIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G +Y GR Q+ +K + + +E +++ NLYVKN++D +D+
Sbjct: 254 KEVNGRMIYV-----GRAQKRIERQG-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 DRLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 233 IAQTKRERTSYLR--------IMYAKQGPGLASTNFPVH---PTLYQRALQVYQAPG--- 278
+AQ K ER + L M A GP L S P + P + Q + + +P
Sbjct: 367 LAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSPNPVA 426
Query: 279 -FRHGGMIPNGFSSP----PPSPLFLTRAGQAAANNLTNGNQ 315
R + S P PP+PL + ++N++ Q
Sbjct: 427 PVRQAPQWTSHQSRPPQYQPPAPLMRAVPPRRMSSNISTMKQ 468
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 107/190 (56%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+GYGFV + TQE+A AI+ +
Sbjct: 102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
+ +++ ++ R +E + ++++ N+Y+KN +D+D+ L
Sbjct: 161 MLLNDRKVFVGHFKSRREREL-------------EYGAKVMEFTNVYIKNFGEDMDDKRL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G SVK+M + G S+GFGFV + N +EA +A++ +NG + + +YV AQ
Sbjct: 208 REIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER L+
Sbjct: 268 KRIERQGELK 277
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 32/191 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
++G + P LR + N+++KNLD E I +K LY
Sbjct: 74 FEVIKGRPIRIMWSQRDPGLR------KSGVGNVFIKNLD----ESIDNKALY------- 116
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
FS G I S K++ G S+G+GFV F + ANRAI T+NG+L + + +
Sbjct: 117 -------DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV 168
Query: 230 YVAIAQTKRER 240
+V +++RER
Sbjct: 169 FVGHFKSRRER 179
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 111/196 (56%), Gaps = 8/196 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + ++ L + FS+FG I S + ++G KGY FV + E A A E
Sbjct: 204 YMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWAAE---- 259
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
T+ G + L GR Q+ A L + + E+++ N+YVKNIN V E
Sbjct: 260 -TMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINVGVTEE 318
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
EL+++FSQCG I+S K+M +G SKGFGFVCFS P+EA A+ T +G +FH KPLYVA
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVAT 378
Query: 234 AQTKRERTSYLRIMYA 249
AQ K +R L++ +
Sbjct: 379 AQKKEDRKMQLQVQFG 394
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 108/195 (55%), Gaps = 16/195 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I N L +F KFG+I S KV +DGKS+GYGFVQ+ +++A AIEKL +
Sbjct: 115 FVKNLPESITNAVLQDMFKKFGNIVSCKVATFEDGKSRGYGFVQFEQEDAAHAAIEKLNS 174
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
TV G E+Y ++K D EE N+Y+KN++ DV+E L+
Sbjct: 175 TTVAGKEIYVGK---------------FMKKTDRAKAEEKYT-NVYMKNLDADVNEDLLR 218
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G I S+ I + G+ KG+ FV F P++A A T+NG F K LYV AQ
Sbjct: 219 EKFSEFGKIVSLAIAKDENGLCKGYAFVNFDKPEDARWAAETMNGTRFGSKCLYVGRAQK 278
Query: 237 KRERTSYLRIMYAKQ 251
K ER LR + ++
Sbjct: 279 KAEREQLLREQFKEK 293
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L ++ L+ F++F + S ++ + G+S YG+ + +++ A AIEK +
Sbjct: 30 DLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAIEKKNHSL 89
Query: 119 VEG-MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQ 177
+ G M S+R + + N++VKNL + +T + L+
Sbjct: 90 LNGKMIRVMWSVREPDARRNG-VGNVFVKNLPESITNAV------------------LQD 130
Query: 178 YFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
F + G I S K+ G S+G+GFV F D A+ AI LN K +YV K
Sbjct: 131 MFKKFGNIVSCKVATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKK 190
Query: 238 RER 240
+R
Sbjct: 191 TDR 193
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 118/206 (57%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y + R++ + + D +T NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYVGRAQK-RVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQTELK 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 134/253 (52%), Gaps = 14/253 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + +L+++FSK+G + S+ V + GK +G+GFV Y ESA A+E L+
Sbjct: 241 YIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAVEALHD 300
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+G LY + R++ A + + + T + NLY+KN++D+ D+ +L+
Sbjct: 301 KDYKGNILYVARAQK-RVERDAELRRAH-EQQKYETTLKYQGVNLYIKNLDDEYDDEKLQ 358
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G I+S K+M+ ++G+S+GFGFVCFS PDEA +A+ +NG + KPLYV++AQ
Sbjct: 359 AEFLPFGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGKMLGSKPLYVSLAQR 418
Query: 237 KRERTSYLRIMYAKQG----PGLASTNFPVHP------TLYQRALQVYQAPGFRHGGMIP 286
K R L +++ +A+ P P +Y Y PG R P
Sbjct: 419 KDVRKQQLEAQMSQRAQMRSQQIAAAGIPGAPYGAPPNQMYYGGAAAYPPPG-RGMAYPP 477
Query: 287 NGFSSP-PPSPLF 298
NG + PP P +
Sbjct: 478 NGMPAGMPPRPRY 490
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 103/206 (50%), Gaps = 34/206 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN LH F+ FGDI S KV + G SKGYGFV Y T ESA AI+
Sbjct: 148 FIKNLDETIDNKALHDTFAAFGDILSCKVAMDSTGASKGYGFVHYVTAESAEAAIK---- 203
Query: 117 ATVEGMEL---------YAPSL-RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKN 165
V GM+L + P R +I E A F NLY+KNL +VT E
Sbjct: 204 -GVNGMQLNDKVVFVGIHVPRRERQAKIDEVRAHFTNLYIKNLPTEVTTE---------- 252
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
EL + FS+ G ++S + G +GFGFV + N + A++A+ L+ +
Sbjct: 253 --------ELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENHESASKAVEALHDKDYK 304
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAKQ 251
LYVA AQ + ER + LR + +Q
Sbjct: 305 GNILYVARAQKRVERDAELRRAHEQQ 330
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 97/211 (45%), Gaps = 27/211 (12%)
Query: 41 ASIDVHSAMATPTFIP----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KS 93
+S+ + A+P P + L T+ L++IFS G + S + V +D +S
Sbjct: 40 SSVSTATPNASPASQPNTSLYVGELDPTVTEAMLYEIFSMIGPV--SSIRVCRDAVTRRS 97
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT 153
GY +V Y A A+E+L + ++ +A RI S D
Sbjct: 98 LGYAYVNYLNAADAERALEQLNYSLIKN--------KACRIMWSQR----------DPSL 139
Query: 154 EEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEAN 213
+ N+++KN+++ +D L F+ G I S K+ + G SKG+GFV + + A
Sbjct: 140 RKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVAMDSTGASKGYGFVHYVTAESAE 199
Query: 214 RAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
AI +NG+ + K ++V I +RER + +
Sbjct: 200 AAIKGVNGMQLNDKVVFVGIHVPRRERQAKI 230
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 123/200 (61%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ K+ ++F FG I S+KV+ + GKS+G+GFV Y E+A A++ L
Sbjct: 194 YIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNL-- 251
Query: 117 ATVEGMELYAPS-LRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
GMEL L AGR Q+ A +K+ + + E +++ NLYVKN++D VD
Sbjct: 252 ---NGMELGGGKVLYAGRAQKKAE-RQAELKDKFEKIKMERINRYQGVNLYVKNLDDVVD 307
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ FSQ G I+S ++M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYV
Sbjct: 308 DERLRKEFSQFGTITSARVM-SEGGRSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYV 366
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 367 ALAQRKEDRRAHLASQYMQR 386
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 106/201 (52%), Gaps = 26/201 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S K+ ++G SKGYGFV + T+E+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKIASDENG-SKGYGFVHFETEEAARQAIEKVNG 160
Query: 117 ATVEGMELYAPSL--RAGRI----QESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G ++Y R RI + FNN+Y+KN D++
Sbjct: 161 MLLNGKKVYVGKFIPRKERIALLGDKMKRFNNVYIKNF------------------GDEL 202
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPL 229
D+ ++++ F G I S K+M G S+GFGFV + P+ A +A++ LNG+ L K L
Sbjct: 203 DDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVL 262
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
Y AQ K ER + L+ + K
Sbjct: 263 YAGRAQKKAERQAELKDKFEK 283
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEK--- 113
+ NL +D+ +L + FS+FG I S++ V+S+ G+SKG+GFV +S+ E A A+ +
Sbjct: 298 YVKNLDDVVDDERLRKEFSQFGTITSAR-VMSEGGRSKGFGFVCFSSPEEATKAVTEMNG 356
Query: 114 -------LYAATVEGME--------LYAPSLRAGRIQESASFNNLY 144
LY A + E Y + R Q++A FN ++
Sbjct: 357 RIIVSKPLYVALAQRKEDRRAHLASQYMQRMTTMRQQQTAQFNQMF 402
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N +P +RIM++++ P L
Sbjct: 70 DTMNFDTIKGRP---------------IRIMWSQRDPSL 93
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/365 (30%), Positives = 170/365 (46%), Gaps = 79/365 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL L IF ++G I S+ V+ DGKSKG+GFV ++ E A A+E L
Sbjct: 206 YVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNG 265
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+G E Y G+ Q+ S L +K ++ T+E +DK NLY+KN++D V +
Sbjct: 266 KNFDGKEWYV-----GKAQKK-SERELELKERNEQSTKETVDKYHGTNLYIKNLDDSVGD 319
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
EL++ FS+ G I+S K+MR GIS+G GFV FS + A+ A+ +NG + KPLYVA
Sbjct: 320 EELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGASWALGEMNGKMVAGKPLYVA 379
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTN----FPVHP---------TLYQRA--------- 270
+AQ K +R + L+ +++ P + N P++P LY +A
Sbjct: 380 LAQRKEDRRARLQAQFSQARPVAITPNVSPRMPLYPLGAPGIGQQLLYGQAAPSMIPQAA 439
Query: 271 --LQVYQAPGFRHGG----------------------------------------MIPNG 288
Q + PG R GG M+P G
Sbjct: 440 FGYQQHFVPGMRPGGAPNFYVPLVQQGQQGQRSGGQRGAGPMQQLQQPLPLMHQQMLPRG 499
Query: 289 --FSSPPPSPLFLTRAGQAAANNLTNGNQR---AAANNSMLAVASPDERKDILGQGLYPL 343
+ PP S + + ++ G + A S LA A+P++++ +LG+ LYPL
Sbjct: 500 HVYRYPPGSNMQNIQLAGVPGGMVSYGIGQPMPTQALASALANATPEQQRTMLGEALYPL 559
Query: 344 VKKLK 348
V KL+
Sbjct: 560 VDKLE 564
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 103/193 (53%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ L FS FG+I S K+ G+SKG+GFVQ+ ++ESA NAI+KL
Sbjct: 115 FIKNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNG 174
Query: 117 ATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y + + +ESA FNN+YVKNL + TE
Sbjct: 175 MLINDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTE------------------ 216
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F + G I+S +MR G SKGFGFV F+N ++A +A+ LNG F K YV
Sbjct: 217 ADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVG 276
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 277 KAQKKSERELELK 289
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 26/207 (12%)
Query: 44 DVHSAMATPTFIPFTV---NLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYG 97
D ++ A P+ ++ +L +++ +L+ +F++ + S ++ V +Q +S GYG
Sbjct: 11 DAAASGANPSMTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQ--QSLGYG 68
Query: 98 FVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
+V +S A AI+ L + G + RI S + D +
Sbjct: 69 YVNFSNARDAAKAIDVLNFTPLNGKTI--------RIMYS----------IRDPSARKSG 110
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
N+++KN++ +D L FS G I S KI G SKG GFV F + + A AI+
Sbjct: 111 AANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAID 170
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYL 244
LNG+L + K +YV Q K++R S L
Sbjct: 171 KLNGMLINDKQVYVGPFQRKQDRESAL 197
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 118/209 (56%), Gaps = 9/209 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL ++FSK+G S +V+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDEKLKELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
+ G ++Y GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KELNGRQVYV-----GRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 RLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPV 262
AQ K ER ++L Y ++ + + PV
Sbjct: 368 AQRKEERQAHLTNQYMQRMATVRAVPNPV 396
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 107/190 (56%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM-- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + N+Y+KN +D+D+ +L
Sbjct: 159 ---NGMLLNDRKVFVGRFKSR--------KEREAELGARAREFTNVYIKNFGEDMDDEKL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ FS+ G S+++M G SKGFGFV F ++A +A++ +NG + + +YV AQ
Sbjct: 208 KELFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRAQ 267
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 268 KKGERQNELK 277
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G L RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGRPL--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 113/196 (57%), Gaps = 2/196 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N A +D L ++FSKFG I S+ V+V DGKSKG+GFV + E A A+ +++
Sbjct: 66 YIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHE 125
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G E RA + E SA Y + + + + NLYVKN++D V++ L
Sbjct: 126 YELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERM-QRYQGVNLYVKNLDDTVNDDIL 184
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
KQ F G I+S K+M + G SKGFGFVCF PDEA +A+ +NG + KPLYVA+AQ
Sbjct: 185 KQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQ 244
Query: 236 TKRERTSYLRIMYAKQ 251
K +R + L Y ++
Sbjct: 245 RKEDRKAQLASQYMQR 260
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 18/171 (10%)
Query: 85 VVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL--RAGRIQESASFNN 142
V ++ SKGYGFV + T+ESA AIEK+ +EG ++Y R R++E
Sbjct: 1 VANDEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYVGKFQPRTARLREMGETAR 60
Query: 143 LYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFG 202
+ N+Y+KN D++D+ L++ FS+ G I+S +M G SKGFG
Sbjct: 61 RFT--------------NVYIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFG 106
Query: 203 FVCFSNPDEANRAINTLNGILF--HQKPLYVAIAQTKRERTSYLRIMYAKQ 251
FV F NP++A +A+ ++ ++ LYV AQ K ER++ L+ Y +Q
Sbjct: 107 FVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQ 157
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 113/196 (57%), Gaps = 2/196 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N A +D L ++FSKFG I S+ V+V DGKSKG+GFV + E A A+ +++
Sbjct: 202 YIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHE 261
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G E RA + E SA Y + + + + NLYVKN++D V++ L
Sbjct: 262 YELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERM-QRYQGVNLYVKNLDDTVNDDIL 320
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
KQ F G I+S K+M + G SKGFGFVCF PDEA +A+ +NG + KPLYVA+AQ
Sbjct: 321 KQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQ 380
Query: 236 TKRERTSYLRIMYAKQ 251
K +R + L Y ++
Sbjct: 381 RKEDRKAQLASQYMQR 396
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 110/203 (54%), Gaps = 26/203 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV ++ SKGYGFV + T+ESA AIEK+
Sbjct: 109 FIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNG 168
Query: 117 ATVEGMELYAPSL--RAGRIQE----SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+EG ++Y R R++E + F N+Y+KN D++ +E L+K
Sbjct: 169 MLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEK----------- 217
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF--HQKP 228
FS+ G I+S +M G SKGFGFV F NP++A +A+ ++ ++
Sbjct: 218 -------LFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERK 270
Query: 229 LYVAIAQTKRERTSYLRIMYAKQ 251
LYV AQ K ER++ L+ Y +Q
Sbjct: 271 LYVCRAQKKNERSAELKRRYEQQ 293
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ SKG+GFV F + A +AI +
Sbjct: 107 NIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIM 247
NG+L K +YV Q RT+ LR M
Sbjct: 167 NGMLLEGKKVYVGKFQP---RTARLREM 191
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 119/199 (59%), Gaps = 11/199 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + +D L ++FS+FG + S KV+ G S+G+GFV + T E A A+ +
Sbjct: 194 YVKNLQADVDEQGLQELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ N +K + + ++ +++ NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYV-----GRAQKRVERQN-ELKRRFEQMKQDRMNRYQGVNLYVKNLDDSIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPYGMITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQ 251
+AQ K ER + L Y ++
Sbjct: 367 LAQRKEERKAILTNQYMQR 385
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L+ FS FG+I S KV + G S+G+GFV + T E+A +AI +
Sbjct: 102 FIKNLEASIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQHAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E L + ++ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDHKVFVGHFKSRREREV----ELGARAMEFT--------NIYVKNLQADVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G + SVK+MR + G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 209 ELFSQFGKMLSVKVMRDSSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ +D L
Sbjct: 74 FEMIKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEASIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G S+GFGFV F + A AINT+NG+L + ++V +
Sbjct: 116 YDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFK 174
Query: 236 TKRER 240
++RER
Sbjct: 175 SRRER 179
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEMIKGQP---------------IRIMWSQRDPGL 93
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 113/196 (57%), Gaps = 2/196 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N A +D L ++FSKFG I S+ V+V DGKSKG+GFV + E A A+ +++
Sbjct: 202 YIKNFADELDKEALEKLFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHE 261
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G E RA + E SA Y + + + + NLYVKN++D V++ L
Sbjct: 262 YELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERM-QRYQGVNLYVKNLDDTVNDDIL 320
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
KQ F G I+S K+M + G SKGFGFVCF PDEA +A+ +NG + KPLYVA+AQ
Sbjct: 321 KQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQ 380
Query: 236 TKRERTSYLRIMYAKQ 251
K +R + L Y ++
Sbjct: 381 RKEDRKAQLASQYMQR 396
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 110/203 (54%), Gaps = 26/203 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV ++ SKGYGFV + T+ESA AIEK+
Sbjct: 109 FIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNG 168
Query: 117 ATVEGMELYAPSL--RAGRIQE----SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+EG ++Y R R++E + F N+Y+KN D++ +E L+K
Sbjct: 169 MLLEGKKVYVGKFQPRTARLREMGETARRFTNVYIKNFADELDKEALEK----------- 217
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF--HQKP 228
FS+ G I+S +M G SKGFGFV F NP++A +A+ ++ ++
Sbjct: 218 -------LFSKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERK 270
Query: 229 LYVAIAQTKRERTSYLRIMYAKQ 251
LYV AQ K ER++ L+ Y +Q
Sbjct: 271 LYVCRAQKKNERSAELKRRYEQQ 293
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ SKG+GFV F + A +AI +
Sbjct: 107 NIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 166
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIM 247
NG+L K +YV Q RT+ LR M
Sbjct: 167 NGMLLEGKKVYVGKFQP---RTARLREM 191
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 121/207 (58%), Gaps = 5/207 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++DD+D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITRYQVV--NLYVKNLDDDIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 370 RKEERQAHLTNEYMQRMASVRAVPNPV 396
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKVLYDTASAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM-- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + N+Y+KN +D+D+ L
Sbjct: 159 ---NGMLLNDRKVFVGRFKSR--------KEREAELGARAKEFPNVYIKNFGEDMDDERL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 268 KKVERQTELK 277
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 37/218 (16%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS+ G I S +V V+++ + Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITR--RYSSYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
A++ + ++G + PSLR + N++VKNLD
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLR------RSGVGNIFVKNLD------------- 107
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
K+IN+ V L S G I S K++ G SKG+GFV F + A RAI +NG+
Sbjct: 108 -KSINNKV----LYDTASAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGM 161
Query: 223 LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
L + + ++V ++++ER + L AK+ P + NF
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAR-AKEFPNVYIKNF 198
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 112/195 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D KL ++FSK+G+I S+ V+ DGK KG+GFV Y+ ++A A++ L
Sbjct: 236 FVKNFGEHLDQEKLTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNE 295
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T+EG +L RA + E + + L + + NLYVKNI++++ + L+
Sbjct: 296 KTLEGTDLKLSVCRAQKKSERTADLKRKYEALKQERVQRYQGVNLYVKNIDEELTDEGLR 355
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+F+ G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA+AQ
Sbjct: 356 AHFASFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPLYVALAQR 415
Query: 237 KRERTSYLRIMYAKQ 251
K +R + L Y ++
Sbjct: 416 KEDRRAQLASQYMQK 430
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 105/196 (53%), Gaps = 18/196 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV +DG S+GYGFV + T+ESA AIEK+
Sbjct: 143 FIKNLDRVIDNKSIYDTFSLFGNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKVNG 202
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y RA R++E Y N++VKN + +D+ +
Sbjct: 203 MLLSGKKVYVGKFQTRAQRLKELGESGLKYT--------------NVFVKNFGEHLDQEK 248
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI- 233
L + FS+ G I+S +M G KGFGFV +++PD A +A++ LN L +++
Sbjct: 249 LTKMFSKYGEITSAVVMTDADGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVC 308
Query: 234 -AQTKRERTSYLRIMY 248
AQ K ERT+ L+ Y
Sbjct: 309 RAQKKSERTADLKRKY 324
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 19/186 (10%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L + FS G + S +V + S GY +V + A A++ + T
Sbjct: 58 DLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFET 117
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+ G R RI S D + N+++KN++ +D +
Sbjct: 118 IHG--------RPMRIMWSQR----------DPAARRAGNGNIFIKNLDRVIDNKSIYDT 159
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
FS G I S K+ G S+G+GFV F + A AI +NG+L K +YV QT+
Sbjct: 160 FSLFGNILSCKVAADEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQTRA 219
Query: 239 ERTSYL 244
+R L
Sbjct: 220 QRLKEL 225
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 19/98 (19%)
Query: 139 SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-I 197
S +LY+ +L DVTE +L + FS G + S+++ R N +
Sbjct: 50 SMASLYIGDLHGDVTESMLFEK------------------FSMAGPVLSIRVCRDNTSRL 91
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
S G+ +V F P +A RA++T+N H +P+ + +Q
Sbjct: 92 SLGYAYVNFQQPADAERALDTMNFETIHGRPMRIMWSQ 129
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 138/263 (52%), Gaps = 36/263 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + +L +IF +FG I S V+ +DGKS+ +GFV + E A A+E L
Sbjct: 209 FVKNLSESTLEEELRKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNG 268
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++ + + GR Q+ S + +K+ + +E +DK NLY+KN++D + +
Sbjct: 269 YKLDNKDWFV-----GRAQKK-SEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSISD 322
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS G I+S K+MR G+SKG GFV FS P+EA+RA++ +NG + KPLYVA
Sbjct: 323 DKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVA 382
Query: 233 IAQTKRERTSYLRI-------------------MYAKQGPGLASTNF---PVHPTLYQRA 270
+AQ K ER + L+ MY GPGL F P L +A
Sbjct: 383 LAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPPPAMLPPQA 442
Query: 271 LQVYQ---APGFR-HGGMIPNGF 289
YQ PG R GG +PN F
Sbjct: 443 GFGYQQQLVPGMRPGGGPMPNFF 465
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 101/190 (53%), Gaps = 16/190 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV V G+SKGYGFVQY + E+A AIEKL
Sbjct: 118 FIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNG 177
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ ++Y P +R K D ++ N++VKN+++ E EL
Sbjct: 178 MLLNDKQVYVGPFVR---------------KQERDMAVDKTRFTNVFVKNLSESTLEEEL 222
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F + G I+SV +M+ G S+ FGFV F N ++A RA+ LNG K +V AQ
Sbjct: 223 RKIFGEFGTITSVAVMKDEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQ 282
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 283 KKSEREMELK 292
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + + +L+ +F++ G + S +V + SQ +S GYG+V Y + A A+E
Sbjct: 30 YVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQ--RSLGYGYVNYGNPQDAARALEV 87
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + G + RI S D + N+++KN++ +D
Sbjct: 88 LNFTPLHGKPI--------RIMYSNR----------DPTIRRSGNGNIFIKNLDKAIDHK 129
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ + G SKG+GFV + + + A +AI LNG+L + K +YV
Sbjct: 130 ALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGP 189
Query: 234 AQTKRER 240
K+ER
Sbjct: 190 FVRKQER 196
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 16/95 (16%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINT 218
+LYV +++ +V + +L F+Q G + SV++ R S G+G+V + NP +A RA+
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
LN H KP +RIMY+ + P
Sbjct: 88 LNFTPLHGKP---------------IRIMYSNRDP 107
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 85 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 144
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 145 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 202
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 203 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 261
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 262 KEERQAHLTNQYMQRMASVRAVPNPV 287
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 15/182 (8%)
Query: 65 IDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124
IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+ GM L
Sbjct: 1 IDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM-----NGMLL 54
Query: 125 YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIELKQYFSQCG 183
+ GR + K + ++ + N+Y+KN +D+D+ LK+ F + G
Sbjct: 55 NDRKVFVGRFKSR--------KEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFG 106
Query: 184 IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSY 243
SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ K ER +
Sbjct: 107 PALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 166
Query: 244 LR 245
L+
Sbjct: 167 LK 168
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 133/261 (50%), Gaps = 23/261 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ++ + + +++ +KFG I S+ V +GKSKG+GFV + E A A++ L
Sbjct: 228 YVKNLDESVKDEEFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAVDALNE 287
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+G LY R Q+ K + E++ NLY+KN++DD+D+
Sbjct: 288 TEHKGKILYV-----ARAQKKTEREEELRKQYEQAKLEKLAKYQGVNLYIKNLDDDIDDE 342
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+Q FS G+I+S K+M + SKGFGFVCFS+PDEA +A+ +NG + KP+YVA+
Sbjct: 343 KLRQEFSVYGVITSAKVMCDEKDTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVAL 402
Query: 234 AQTKRERTSYLRI-------MYAKQG---PGLASTNFPVHPTLYQRALQVYQAPGFRHGG 283
AQ K R S L M +QG PG A P P Y Q + G R
Sbjct: 403 AQRKEIRRSQLEAQMAQRNQMRMQQGMPMPG-APGYMPGAPMFYAPPGQ-FMPQGQRPAV 460
Query: 284 MIPNGFSSPPPSPLFLTRAGQ 304
PNG P P + + GQ
Sbjct: 461 FAPNGMM---PRPRWAPQQGQ 478
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 105/200 (52%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH FS FG+I S K+ + + G SKGYGFV Y T+E+A NAI+ +
Sbjct: 135 FIKNLDPSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVNG 194
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +I++ A F N+YVKNLD+ V +E
Sbjct: 195 MLLNDKKVYVGRHVPKKERQAKIEQFRAKFTNVYVKNLDESVKDE--------------- 239
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + ++ G I+S + + G SKGFGFV F N ++A +A++ LN K LY
Sbjct: 240 ---EFNEMLAKFGPITSALVQTDDEGKSKGFGFVNFENHEDAQKAVDALNETEHKGKILY 296
Query: 231 VAIAQTKRERTSYLRIMYAK 250
VA AQ K ER LR Y +
Sbjct: 297 VARAQKKTEREEELRKQYEQ 316
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 23/207 (11%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYST 103
+ A P+ + L ++ L ++F+ G + S + V +D +S GY +V +
Sbjct: 37 AGTAPPSASLYVGELDPSVTEAMLFEMFNMIGPVAS--IRVCRDAVTRRSLGYAYVNFHN 94
Query: 104 QESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYV 163
A+E L ++G + RI S D + N+++
Sbjct: 95 IVDGERALESLNYTLIKG--------KPCRIMWSQR----------DPSLRKTGSGNVFI 136
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN++ +D L FS G I S KI G SKG+GFV + + A+ AI +NG+L
Sbjct: 137 KNLDPSIDNKALHDTFSAFGNILSCKIALDESGNSKGYGFVHYETEEAADNAIKHVNGML 196
Query: 224 FHQKPLYVAIAQTKRERTSYLRIMYAK 250
+ K +YV K+ER + + AK
Sbjct: 197 LNDKKVYVGRHVPKKERQAKIEQFRAK 223
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 11/221 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + G SKG+GFV + E A A+E++
Sbjct: 263 YIKNFGEDMDDLRLKRLFGKFGPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNG 322
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + L D NLYVKN++D +D+ L+
Sbjct: 323 KELNGKKIYV--GRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLR 380
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLY+A+AQ
Sbjct: 381 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQR 439
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAP 277
K ER ++L Y ++ + + PV L YQ P
Sbjct: 440 KEERQAHLTNQYMQRMASVRAVPNPV--------LNPYQPP 472
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S KVV + G SKGYGFV + T+++A AI+K+
Sbjct: 171 FIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNG 229
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D++ LK
Sbjct: 230 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDLRLK 277
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A+ +NG + K +YV AQ
Sbjct: 278 RLFGKFGPALSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQK 337
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 338 KGERQTELK 346
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F D A RAI+ +
Sbjct: 169 NIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKM 227
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 228 NGMLLNDRKVFVGRFKSRKEREAEL 252
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 128/234 (54%), Gaps = 24/234 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D+ +L +FSKFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESAS--------FNNLY-----VKNLDDDVTEEILDKNLYV 163
+ G ++Y GR Q+ F + V+ + D++ NLYV
Sbjct: 254 KDLNGKQIYV-----GRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYV 308
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN++D +D+ L++ FS G I+S K+ G SKGFGFVCFS+P+EA +A+ +NG +
Sbjct: 309 KNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRI 367
Query: 224 FHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAP 277
KPLYVA+AQ K ER ++L Y ++ +AST+ P + Q QAP
Sbjct: 368 VATKPLYVALAQRKEERQAHLSNQYMQR---MASTSAVSSPVI--NPFQPAQAP 416
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ L+ FS FG+I S KVV ++G SKGYGFV + TQE A AIEK+
Sbjct: 102 FVKNLDRSIDSKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +++ L E N+Y+KN+ +D+D+ L+
Sbjct: 161 MFLNDRKVFVGRFKSRRDRQA---------ELGARAKEFT---NVYIKNLGEDMDDERLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 GLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKHKFGQ 282
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V + + S GY V + E A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L + N++VKN++ +D L
Sbjct: 74 FDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFVKNLDRSIDSKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G SKG+GFV F +EA RAI +NG+ + + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFK 174
Query: 236 TKRERTSYL 244
++R+R + L
Sbjct: 175 SRRDRQAEL 183
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 120/207 (57%), Gaps = 5/207 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ Q GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITRYQVV--NLYVKNLDDAIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + +PLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATEPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPV 262
K ER +YL Y ++ + + PV
Sbjct: 370 RKEERQAYLTNEYMQRKASVPAVPNPV 396
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG++ S KVV ++G SKGYGFV + T+E+A AIEK+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNVLSCKVVCDENG-SKGYGFVHFGTREAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 IPLNDCKVFVGRFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPTLSVKVMTDQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 25/212 (11%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS+ G I S +V V+++ +S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITR--RSSNYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A++ + ++G L RI S +L + N++VKN++
Sbjct: 67 HALDTMNFDVIKGKPL--------RIMWSQRDPSLRKSGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G + S K++ G SKG+GFV F + A RAI +NGI +
Sbjct: 109 SINNKALYDTVSAFGNVLSCKVVCDENG-SKGYGFVHFGTREAAERAIEKMNGIPLNDCK 167
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
++V ++++ER + L AK+ P + NF
Sbjct: 168 VFVGRFKSRKEREAELGAR-AKEFPNVYIKNF 198
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ S+ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 252 ---NGKEMSGKSIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ L+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 120/207 (57%), Gaps = 5/207 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 162 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 221
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G +Y + +++ + + D +T +++ NLYVKN++DD+D+ L
Sbjct: 222 KELNGKHIYVGRAQK-KVERQTELKRKFEQMKQDRITRYQVV--NLYVKNLDDDIDDERL 278
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 279 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 337
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 338 RKEERQAHLTNEYMQRMASVRAVPNPV 364
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 13/166 (7%)
Query: 80 IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESAS 139
++ S VV ++G SKGYGFV + T E+A AIEK+ + +++ ++ + +E+
Sbjct: 93 LRRSGVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREA-- 149
Query: 140 FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK 199
L E N+Y+KN +D+D+ LK F + G SVK+M G SK
Sbjct: 150 -------ELGAKAKE---FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSK 199
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
GFGFV F ++A +A++ +NG + K +YV AQ K ER + L+
Sbjct: 200 GFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELK 245
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS+ G I S+++ R T R S + +V F +P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRR--SSSYAYVNFQHPKDAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------VRIMWSQRDPSL 93
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ S+ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 252 ---NGKEMSGKSIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ L+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AI+K+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIKKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 125/220 (56%), Gaps = 16/220 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ +G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G +LY GR Q+ N +K + + ++ L++ NLYVKN++D +D+
Sbjct: 254 KEVSGRQLYV-----GRAQKRVERQN-ELKRKFEQMKQDRLNRYQGVNLYVKNLDDSIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPV-----HPTLY 267
+AQ K ER + L Y ++ + + P+ PT Y
Sbjct: 367 LAQRKEERRAILSNQYMQRLSTMRALGVPLLGSSQQPTSY 406
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAISTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + ++ N+YVKN+ D+DE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELRARAMEFT--------NIYVKNLQVDMDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+M+ N G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 209 DLFSQFGKLLSVKVMKDNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ D +D L FS G I S K++ G S+GFGFV F + A +AI+T+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAISTM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+L + + ++V +++RER + LR
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELR 184
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + F G I S+++ R T R + + ++ F P +A RA+
Sbjct: 12 SLYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLR--YAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGQP---------------IRIMWSQRDPGL 93
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSQKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSQKEREAEL 183
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 130 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 189
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 190 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 247
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 248 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 306
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 307 KEERQAHLTNQYMQRMASVRAVPNPV 332
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 38 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 96
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 97 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 144
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 145 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 204
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 205 KVERQTELK 213
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAEL 119
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 120/207 (57%), Gaps = 5/207 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G +Y + +++ + + D +T +++ NLYVKN++DD+D+ L
Sbjct: 254 KELNGKHIYVGRAQK-KVERQTELKRKFEQMKQDRITRYQVV--NLYVKNLDDDIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 370 RKEERQAHLTNEYMQRMASVRAVPNPV 396
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 TLLNDRKVFVGRFKSRKEREA---------ELGAKAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 25/212 (11%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS+ G I S +V V+++ +S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITR--RSSSYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
A++ + ++G + RI S +L + N++VKN++
Sbjct: 67 RALDTMNFDVIKGKPV--------RIMWSQRDPSLRRSGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G I S K++ G SKG+GFV F + A RAI +NG L + +
Sbjct: 109 SINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRK 167
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
++V ++++ER + L AK+ P + NF
Sbjct: 168 VFVGRFKSRKEREAELGAK-AKEFPNVYIKNF 198
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 214 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 273
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 274 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 331
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 332 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 390
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 391 KEERQAHLTNQYMQRMASVRAVPNPV 416
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 122 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 180
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 181 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 228
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 229 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 288
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 289 KVERQTELK 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 120 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 178
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 179 NGMLLNDRKVFVGRFKSRKEREAEL 203
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 119/206 (57%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL ++FSK+G+ S +V+ ++GKS+G+GFV + E A A++++
Sbjct: 194 YIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KEMNGKLMYVG--RAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN D++D+ +L+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGDEMDDEKLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G S+++M G S+GFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGQPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 209 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 268
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 269 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 326
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 327 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 385
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 386 KEERQAHLTNQYMQRMASVRAVPNPV 411
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 117 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 175
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 176 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 223
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 224 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 283
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 284 KVERQTELK 292
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 115 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 173
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 174 NGMLLNDRKVFVGRFKSRKEREAEL 198
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 110/200 (55%), Gaps = 3/200 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ +DGKSKG+GFV + T E+A A++ L
Sbjct: 186 YVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ EG LY RA + E + L E + NLYVKN++D +D+ L
Sbjct: 246 KDMGEGKSLYVA--RAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I+S K+M G SKGFGFVCF+ P EA A+ LNG + KPLYVA+AQ
Sbjct: 304 RVAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALAQ 363
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K ER ++L Y + G+
Sbjct: 364 RKEERKAHLASQYMRHMTGM 383
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 93 FIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFTEDFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK++F G I+S K+M G SKGFGFV F + A A+ LNG + K LYVA
Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ DV+E L FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLVRNKP---------------IRIMWSQRDPSL 84
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 361 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 420
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 421 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 478
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 479 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 537
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 538 KEERQAHLTNQYMQRMASVRAVPNPV 563
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 107/194 (55%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 269 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 327
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 328 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 375
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 376 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 435
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 436 KVERQTELKRKFEQ 449
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 267 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 325
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 326 NGMLLNDRKVFVGRFKSRKEREAEL 350
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 120/203 (59%), Gaps = 10/203 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL IF K+G I S+KV+ GK++G+GFV + +SA A+E+L
Sbjct: 195 YIKNFGDELDDDKLLVIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNG 254
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G LY GR Q+ A + ++ + + +E L++ NLYVKN++D +D+
Sbjct: 255 KDMGGRPLYV-----GRAQKKAERQSELKRHFEQ-LKQERLNRYQGVNLYVKNLDDALDD 308
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 309 ERLRKEFGPFGNITSAKVMTDANGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVA 368
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K +R ++L Y + G+
Sbjct: 369 LAQRKEDRKAHLASQYMHRIAGM 391
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 101/189 (53%), Gaps = 12/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN ++ FS FG+I S +V ++ SKGYGFV + T+E+A AI K+
Sbjct: 102 FIKNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKVNG 161
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++Y + +E K L D N+Y+KN D++D+ +L
Sbjct: 162 MLLNNKKVYVGKFIPRKERE---------KMLGDKAR---CFTNVYIKNFGDELDDDKLL 209
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G I+S K+M + G ++GFGFV F PD A RA+ LNG +PLYV AQ
Sbjct: 210 VIFEKYGKITSAKVMTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRAQK 269
Query: 237 KRERTSYLR 245
K ER S L+
Sbjct: 270 KAERQSELK 278
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S ++ SKG+GFV F + AN+AI+ +
Sbjct: 100 NVFIKNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAASKGYGFVHFETEEAANKAISKV 159
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 160 NGMLLNNKKVYVGKFIPRKEREKML 184
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N KP +RIM++++ P L
Sbjct: 70 DTMNFDAIKNKP---------------IRIMWSQRDPSL 93
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ S+ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 252 ---NGKEMSGKSIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ L+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 127/213 (59%), Gaps = 8/213 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NLA +D+ KL + ++G I S+K++ D KSKG+GF+ + E+A + ++ +
Sbjct: 195 FIKNLAEDVDDGKLAEFGGQYGSILSAKIMFD-DSKSKGFGFISFEDHEAANDFVKTING 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ V G LYA RA + E A+ + L + + NLY+KN++D++D+ L+
Sbjct: 254 SEVNGRTLYAG--RAQKKAERAAELKARFEALKQERSTRYQGVNLYIKNLDDEIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G I+S K+M ++ SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSRYGTITSAKVMSDDKANSKGFGFVCFSSPEEATKAVTEMNGRILVAKPLYVALAQR 371
Query: 237 KRERTSYLRIMYAKQ-GP----GLASTNFPVHP 264
K ER + L Y ++ P G ++ PV+P
Sbjct: 372 KDERRAQLASQYMQRVAPQVRVGQQASQQPVNP 404
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 103/194 (53%), Gaps = 17/194 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG I S KVV ++G +KGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKAMYDTFSAFGHILSCKVVTDENGVNKGYGFVHFETQEAANKAIEKVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R+ + + N+++KN+ +DVD+ +
Sbjct: 162 MLLNGKKVYVGYFIPRKERLMQMGDHQKQFT--------------NVFIKNLAEDVDDGK 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L ++ Q G I S KIM + SKGFGF+ F + + AN + T+NG + + LY A
Sbjct: 208 LAEFGGQYGSILSAKIM-FDDSKSKGFGFISFEDHEAANDFVKTINGSEVNGRTLYAGRA 266
Query: 235 QTKRERTSYLRIMY 248
Q K ER + L+ +
Sbjct: 267 QKKAERAAELKARF 280
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + L + FS G I S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
T++G R RI S +L + N+++KN++ +D +
Sbjct: 74 FDTLKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKSIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G++KG+GFV F + AN+AI +NG+L + K +YV
Sbjct: 116 YDTFSAFGHILSCKVVTDENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFI 175
Query: 236 TKRER 240
++ER
Sbjct: 176 PRKER 180
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 38/119 (31%)
Query: 140 FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRG 196
N+LYV +L DVTE +L + FS G I S+++ R T R
Sbjct: 10 MNSLYVGDLHADVTEALLFEK------------------FSTAGPILSIRVCRDMITRRS 51
Query: 197 ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+ G+ +V F P +A RA++T+N +P +RIM++++ P L
Sbjct: 52 L--GYAYVNFQQPADAERALDTMNFDTLKGRP---------------IRIMWSQRDPSL 93
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 119/206 (57%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL ++FSK+G+ S +V+ ++GKS+G+GFV + E A A++++
Sbjct: 194 YIKNFGDEMDDEKLRELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KEMNGKLMYVG--RAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN D++D+ +L+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGDEMDDEKLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G S+++M G S+GFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGQPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 252 ---NGKEMSGKAIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGM 389
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDGNLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR + G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVMKGKP---------------IRIMWSQRDPSL 93
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 68 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 127
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 128 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 185
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 186 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 244
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 245 KEERQAHLTNQYMQRMASVRAVPNPV 270
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 82 SSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFN 141
+ KVV ++G SKGYGFV + TQE+A AIEK+ GM L + GR +
Sbjct: 1 ACKVVRDENG-SKGYGFVHFETQEAAERAIEKM-----NGMLLNDRKVFVGRFKSR---- 50
Query: 142 NLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKG 200
K + ++ + N+Y+KN +D+D+ LK F + G SVK+M G SKG
Sbjct: 51 ----KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKG 106
Query: 201 FGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
FGFV F ++A +A++ +NG + K +YV AQ K ER + L+
Sbjct: 107 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 151
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 252 ---NGKEMSGKAIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRREFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGM 389
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDGNLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR + G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVMKGKP---------------IRIMWSQRDPSL 93
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 162 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 221
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 222 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 279
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 280 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 338
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 339 KEERQAHLTNQYMQRMASVQAVPNPV 364
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 80 IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESAS 139
++ S VV ++G SKGYGFV + TQE+A AIEK+ GM L + GR +
Sbjct: 93 LRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKM-----NGMLLNDRKVFVGRFKSR-- 144
Query: 140 FNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGIS 198
K + ++ + N+Y+KN +D+D+ LK F + G SVK+M G S
Sbjct: 145 ------KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS 198
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
KGFGFV F ++A +A++ +NG + K +YV AQ K ER + L+
Sbjct: 199 KGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELK 245
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------VRIMWSQRDPSL 93
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 211 YIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEM-- 268
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 269 ---NGKEMSGKAIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 324
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 325 EKLRREFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 383
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 384 LAQRKEERKAHLTNQYMQRVAGM 406
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 119 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 177
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 178 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDGNLK 225
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR + G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 226 ELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 285
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 286 KVERQAELK 294
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 86
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 87 DTMNFDVMKGKP---------------IRIMWSQRDPSL 110
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 164/343 (47%), Gaps = 74/343 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL + D L + F +FG++ S KV+ + G SK +GF+ + + A A+E ++
Sbjct: 185 FVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMH 244
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+EG +LY GR Q+ A ++ +K + + +E + + NLYVKN++D +D
Sbjct: 245 EKEIEGKKLYC-----GRAQKKAERSS-ELKAKYEKIKQERIQRYQGVNLYVKNLDDSID 298
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F Q G I+S K++ G SKGFGFVCFS+P+EA +A+ +NG +F KPLYV
Sbjct: 299 DEGLREAFKQFGNITSAKVITDLNGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYV 358
Query: 232 AIAQTKRERTSYLRIMYAKQ-----------GPGLASTNFP----VHPTLYQRALQVY-- 274
+AQ K +R ++L+ Y ++ G + + NF + PT+ + +Q++
Sbjct: 359 GLAQRKEDRKAHLQQQYMQRVSTGIRMQAFMGNQVVNQNFQPPRYILPTMQGQPVQMFPQ 418
Query: 275 ------------------QAPGFRHGGMIPNG-------------------FSSPPPSPL 297
Q PG G M G PP P
Sbjct: 419 GTPMVRATPRWAPPNQRVQMPGMIRGRMAQQGGPQFRLTPSVRNVQIPSEVIQMPPQMPH 478
Query: 298 FLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGL 340
AG A LT +SMLA A+P E+K +LG+ L
Sbjct: 479 QNQPAGDQAPETLT---------SSMLANANPQEQKQMLGERL 512
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 97/197 (49%), Gaps = 18/197 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV +G SKG+GFV Y + ESA AIEK+
Sbjct: 93 FIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNG 151
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+E +++ R R++E + NL+VKN+ D D
Sbjct: 152 MLMEDKKVFVARFKSRNDRMREFGDAAKHFT--------------NLFVKNLPDSWDTDA 197
Query: 175 LKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L + F Q G + S K++ G+SK GF+ F D+A A+ ++ K LY
Sbjct: 198 LLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGR 257
Query: 234 AQTKRERTSYLRIMYAK 250
AQ K ER+S L+ Y K
Sbjct: 258 AQKKAERSSELKAKYEK 274
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKGFGFV + + + A RAI +
Sbjct: 91 NVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKV 149
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L K ++VA +++ +R
Sbjct: 150 NGMLMEDKKVFVARFKSRNDR 170
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 162/304 (53%), Gaps = 35/304 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + FS+FG + + ++ +GKS+G+GFV + + + A A+E L
Sbjct: 210 YVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNG 269
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
A + +L+ GR Q+ A L +K+ + V I + NLYVKN++ VD+
Sbjct: 270 AMLGSKKLFV-----GRAQKKAERQEL-LKHEKEMVNCNIGKEKASNLYVKNLDASVDDD 323
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+++FS CG I+S K+MR + G+SKGFGFVCFS +EA +A+ TLNG L H + LY+A+
Sbjct: 324 KLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAM 383
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPP 293
AQ K +R + + A+QG + N+ YQ+ + + G+ ++SP
Sbjct: 384 AQRKEDR-QRIPMKQAQQGN---TNNWG-----YQQNSRTFATSKVPTQGL---NYASPS 431
Query: 294 PSPLFLTRAGQAAANNLTNGNQRAAANNSMLA---VASPDE------RKDILGQGLYPLV 344
L + G N +G++ A++ S+ + +P + K+I+G LYPLV
Sbjct: 432 NQKLHFKKKG-----NNKSGSEEASSKGSVSEKHFIRAPAQSNVWGNSKEIIGHHLYPLV 486
Query: 345 KKLK 348
L+
Sbjct: 487 HSLQ 490
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 17/190 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I++ L IF KFG+I S KV ++GKSK +GFVQ+ + +SA A+ L
Sbjct: 120 FVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALND 178
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLD-DDVTEEILDKNLYVKNINDDVDEIEL 175
++G +L+ +VK + + +EE N+YVKN+ +D+ E +
Sbjct: 179 TMLDGKKLFVSK---------------FVKKCERKEASEETKFTNVYVKNLGEDLTEDII 223
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS+ G + +V IM+ G S+GFGFV F +PDEA +A+ LNG + K L+V AQ
Sbjct: 224 RDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQ 283
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 284 KKAERQELLK 293
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL+VKN++ ++ L+ F + G I S K+ N G SK FGFV F + D A A+N L
Sbjct: 118 NLFVKNLDPSINSASLQDIFCKFGNILSCKVAEEN-GKSKCFGFVQFDSDDSATAALNAL 176
Query: 220 NGILFHQKPLYVAIAQTKRER 240
N + K L+V+ K ER
Sbjct: 177 NDTMLDGKKLFVSKFVKKCER 197
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEAN 213
E+ LYV +++ +V E+EL FS G + SV++ R + G S + +V F P +A+
Sbjct: 25 ELHKAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFYPSDAS 84
Query: 214 RAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
+A+ LN KP +RIM++ + P
Sbjct: 85 KALACLNHTKLMGKP---------------MRIMWSHRDP 109
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 128/217 (58%), Gaps = 16/217 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + + +L ++F +FG+I S+ V+ DGKSK +GF+ + T E A A+E L
Sbjct: 220 YVKNLSESTTDDELKKVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNG 279
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ S +K+ + +E +DK NLYVKN++D +D+
Sbjct: 280 KKFDDKEWYV-----GKAQKK-SEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDD 333
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS+ G I+S K+MR GIS+G GFV FS +EA+RA++ +NG + KPLYVA
Sbjct: 334 EKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVA 393
Query: 233 IAQTKRERTSYLRIMYAK-----QGPGLASTNFPVHP 264
+AQ K ER + L+ +++ P LA P++P
Sbjct: 394 LAQRKEERRAKLQAQFSQLRPVAMPPSLAP-RMPIYP 429
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 14/189 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH FS FG+I S K+ +G+SKGYGFVQY +ESA AI+KL
Sbjct: 129 FIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNG 188
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++Y + +ES + + +N+YVKN+++ + ELK
Sbjct: 189 MLMNDKQVYVGHFLRKQERESTTGMTKF--------------QNVYVKNLSESTTDDELK 234
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G I+S +MR G SK FGF+ F ++A +A+ +LNG F K YV AQ
Sbjct: 235 KVFGEFGNITSAVVMRDADGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQK 294
Query: 237 KRERTSYLR 245
K ER L+
Sbjct: 295 KSEREQELK 303
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 21/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L+ +F++ G + S +V +S GYG+V YS A A+E L
Sbjct: 41 YVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEMLN 100
Query: 116 AATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
V G + S R +++S S N+++KN++ +D
Sbjct: 101 FTPVNGKSIRVMYSHRDPTLRKSGS-------------------ANIFIKNLDKSIDNKA 141
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S KI + G SKG+GFV + N + A AI+ LNG+L + K +YV
Sbjct: 142 LHDTFSSFGNILSCKIATDSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHF 201
Query: 235 QTKRERTS 242
K+ER S
Sbjct: 202 LRKQERES 209
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 135/267 (50%), Gaps = 43/267 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NLA T L +F +FG I S V+ +GKSK +GFV + + A ++E L
Sbjct: 211 FVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNG 270
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V+G E Y G+ Q+ S + +K+ + +E DK NLYVKN++D +D+
Sbjct: 271 KKVDGKEWYV-----GKAQKK-SEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDD 324
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F+ G I+S K+MR GIS+G GFV FS+P+EA RA+ +NG + KPLYVA
Sbjct: 325 DKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVA 384
Query: 233 IAQTKRERTSYLRI--------------------MYAKQGPGLASTNF--PVHPTL---- 266
+AQ K +R + L+ MY GPG+ F PT+
Sbjct: 385 LAQRKEDRIARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQ 444
Query: 267 ----YQRALQVYQAPGFRHGGMIPNGF 289
YQ+ L PG GG +PN F
Sbjct: 445 PGFGYQQQLMPGMRPG---GGPMPNFF 468
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 103/198 (52%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG I S KV G+SKG+GFVQ+ T+E+AL AIEKL
Sbjct: 120 FIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNG 179
Query: 117 ATVEGMELY-APSLRAGR---IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ P LR + E FNN++VKNL + +EE
Sbjct: 180 MLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEE----------------- 222
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F + G I+SV +MR G SK FGFV F N D+A R++ LNG K YV
Sbjct: 223 -DLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVG 281
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER L+ + +
Sbjct: 282 KAQKKSEREVELKSRFEQ 299
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 21/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L+ +F++ G + S +V +S GYG+V YS A A++ L
Sbjct: 32 YVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLN 91
Query: 116 AATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G + S R +++S S N+++KN++ +D
Sbjct: 92 FTPLNGNPIRVMYSHRDPSVRKSGS-------------------GNIFIKNLDKAIDHKA 132
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S K+ + G SKGFGFV F + A +AI LNG+L + K ++V
Sbjct: 133 LHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPF 192
Query: 235 QTKRERTS 242
K+ER S
Sbjct: 193 LRKQERES 200
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAIN 217
+LYV +++ +V + +L F+Q G + SV++ R T+R S G+G+V +SNP +A+RA++
Sbjct: 30 SLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSR-RSLGYGYVNYSNPVDASRALD 88
Query: 218 TLNGILFHQKPLYV 231
LN + P+ V
Sbjct: 89 VLNFTPLNGNPIRV 102
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ S+ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 252 ---NGKEMSGKSIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ L+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + E A A+E++
Sbjct: 194 YIKNFGDDMDDERLKELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KDINGKMVFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+PDEA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGM 389
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M + G SKGFGFV F ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSKYGKTLSVKVMTDSSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 135/267 (50%), Gaps = 43/267 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NLA T L +F +FG I S V+ +GKSK +GFV + + A ++E L
Sbjct: 211 FVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNG 270
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V+G E Y G+ Q+ S + +K+ + +E DK NLYVKN++D +D+
Sbjct: 271 KKVDGKEWYV-----GKAQKK-SEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDD 324
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F+ G I+S K+MR GIS+G GFV FS+P+EA RA+ +NG + KPLYVA
Sbjct: 325 DKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVA 384
Query: 233 IAQTKRERTSYLRI--------------------MYAKQGPGLASTNF--PVHPTL---- 266
+AQ K +R + L+ MY GPG+ F PT+
Sbjct: 385 LAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQ 444
Query: 267 ----YQRALQVYQAPGFRHGGMIPNGF 289
YQ+ L PG GG +PN F
Sbjct: 445 PGFGYQQQLMPGMRPG---GGPMPNFF 468
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 103/198 (52%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG I S KV G+SKG+GFVQ+ T+E+AL AIEKL
Sbjct: 120 FIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNG 179
Query: 117 ATVEGMELY-APSLRAGR---IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ P LR + E FNN++VKNL + +EE
Sbjct: 180 MLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEE----------------- 222
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F + G I+SV +MR G SK FGFV F N D+A R++ LNG K YV
Sbjct: 223 -DLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVG 281
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER L+ + +
Sbjct: 282 KAQKKSEREVELKSRFEQ 299
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 21/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L+ +F++ G + S +V +S GYG+V YS A A++ L
Sbjct: 32 YVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVLN 91
Query: 116 AATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G + S R +++S S N+++KN++ +D
Sbjct: 92 FTPLNGNPIRVMYSHRDPSVRKSGS-------------------GNIFIKNLDKAIDHKA 132
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S K+ + G SKGFGFV F + A +AI LNG+L + K ++V
Sbjct: 133 LHDTFSAFGSILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPF 192
Query: 235 QTKRERTS 242
K+ER S
Sbjct: 193 LRKQERES 200
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAIN 217
+LYV +++ +V + +L F+Q G + SV++ R T+R S G+G+V +SNP +A+RA++
Sbjct: 30 SLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSR-RSLGYGYVNYSNPVDASRALD 88
Query: 218 TLNGILFHQKPLYV 231
LN + P+ V
Sbjct: 89 VLNFTPLNGNPIRV 102
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 116/196 (59%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L
Sbjct: 254 KELSGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITRYQVV--NLYVKNLDDGIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 103/190 (54%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM-- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + + N+Y+KN +D+D+ L
Sbjct: 159 ---NGMLLNDRKVFVGRFKSR--------KEREAELGAKAKEFPNVYIKNFGEDMDDERL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F + G SVK+M G SKGFGFV F ++A +A++ +NG K +YV AQ
Sbjct: 208 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQ 267
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 268 KKVERQTELK 277
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS G I S + V +D +S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRVCRDLITRRSSNYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMEL------YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
+A++ + ++G + + PSLR + N++
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQHDPSLRKSGV------------------------GNIF 102
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
VKN++ ++ L S G I S K++ G SKG+GFV F + A RAI +NG+
Sbjct: 103 VKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGM 161
Query: 223 LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
L + + ++V ++++ER + L AK+ P + NF
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAK-AKEFPNVYIKNF 198
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAYLTNEYMQRM 386
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 116/196 (59%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDGIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AI+K+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKRTFEQ 282
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAYLTNEYMQRM 386
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 25/212 (11%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS G I S + + +D S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRICRDLITSGSSNYAYVNFQHTKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A++ + ++G + RI S +L + N++VKN++
Sbjct: 67 HALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G I S ++ G SKG+GFV F + A RAI +NG+L + +
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRK 167
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
++V ++++ER + L AK+ P + NF
Sbjct: 168 VFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 103/189 (54%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A EK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERVSEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A R +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERVSEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEL 183
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 139/271 (51%), Gaps = 23/271 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D +L +FS+FG + S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ N +K + + ++ L + NLYVKN++D +D+
Sbjct: 254 REVSGRLLYV-----GRAQKRVERQN-ELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQ--------GPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM 284
+AQ K ER + L Y ++ GP L S P L QAP + G
Sbjct: 367 LAQRKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPAVPQPPAQAPYYGSGPP 426
Query: 285 I---PNGFSSPP-PSPLFLTRAGQAAANNLT 311
I P + PP PS + R + LT
Sbjct: 427 IQPAPRWTAQPPRPSCASVVRPAAMSRRPLT 457
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T E+A NAI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E L + ++ N+YVKN++ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREV----ELGARAMEF--------TNIYVKNLHVDVDEQRLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR + G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEVIKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + A AI+T+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER L
Sbjct: 175 SRREREVEL 183
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGPILSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEVIKGQP---------------IRIMWSQRDPGL 93
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 252 ---NGKEMSGKAIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRREFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGM 389
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDGNLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR + G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVMKGKP---------------IRIMWSQRDPSL 93
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 123 YIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEM-- 180
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 181 ---NGKEMSGKAIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 236
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 237 EKLRREFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 295
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 296 LAQRKEERKAHLTNQYMQRVAGM 318
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 31 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 89
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 90 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDGNLK 137
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR + G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 138 ELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 197
Query: 237 KRERTSYLRIMY 248
K ER + L+ +
Sbjct: 198 KVERQAELKRKF 209
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 25/118 (21%)
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIIS 186
PSLR + N+++KNLD E I +K LY FS G I
Sbjct: 20 PSLR------KSGVGNVFIKNLD----ESIDNKALY--------------DTFSAFGNIL 55
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
S K++ G SKG+ FV F + A++AI +NG+L + + ++V ++++ER + L
Sbjct: 56 SCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 112
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 116/196 (59%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDGIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AI+K+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKRTFEQ 282
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAYLTNEYMQRM 386
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 25/212 (11%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS G I S + + +D S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRICRDLITSGSSNYAYVNFQHTKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A++ + ++G + RI S +L + N++VKN++
Sbjct: 67 HALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G I S ++ G SKG+GFV F + A RAI +NG+L + +
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRK 167
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
++V ++++ER + L AK+ P + NF
Sbjct: 168 VFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQREAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 116/196 (59%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDGIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AI+K+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKRTFEQ 282
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAYLTNEYMQRM 386
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 25/212 (11%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS G I S + + +D S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRICRDLITSGSSNYAYVNFQHTKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A++ + ++G + RI S +L + N++VKN++
Sbjct: 67 HALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G I S ++ G SKG+GFV F + A RAI +NG+L + +
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRK 167
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
++V ++++ER + L AK+ P + NF
Sbjct: 168 VFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 135 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 194
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 195 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 252
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 253 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 311
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 312 KEERQAHLTNQYMQRMASVRAVPNPV 337
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 43 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 101
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 102 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 149
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 150 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 209
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 210 KVERQTELK 218
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 41 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 99
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 100 NGMLLNDRKVFVGRFKSRKEREAEL 124
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 157 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 216
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 217 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 274
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 275 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 333
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 334 KEERQAHLTNQYMQRMASVRAVPNPV 359
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 65 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 123
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 124 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 171
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 172 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 231
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 232 KVERQTELK 240
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 63 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 121
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 122 NGMLLNDRKVFVGRFKSRKEREAEL 146
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L+ + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLHKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + E A A+E++
Sbjct: 194 YIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KDINGKMVFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+PDEA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGM 389
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDGRLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M G SKGFGFV F ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQREAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + E A A+E++
Sbjct: 194 YIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KDINGKMVFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+PDEA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGM 389
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDGRLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M G SKGFGFV F ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 116/196 (59%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDGIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AI+K+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKRTFEQ 282
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN++ ++ L S G I S ++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
NG+L + + ++V ++++ER + L AK+ P + NF
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAYLTNEYMQRM 386
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 18/98 (18%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAIN 217
+LYV +++ DV E L + FS G I S++I R G S + +V F + +A A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSG-SSNYAYVNFQHTKDAEHALD 70
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
T+N + KP +RIM++++ P L
Sbjct: 71 TMNFDVIKGKP---------------VRIMWSQRDPSL 93
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQREAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 117/213 (54%), Gaps = 3/213 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N A +D KL ++F+KFG I S V+ DGKSKG+GFV + E A A+ +++
Sbjct: 203 FIKNFADELDKEKLEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHE 262
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ E RA + E SA Y + + + + NLYVKN++D VD+ L
Sbjct: 263 YQLPDSERKLYVCRAQKKNERSAELKRRYEQQKVERM-QRYQGVNLYVKNLDDTVDDEVL 321
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+Q F G I+S K+M + G SKGFGFVCF PDEA +A+ +NG + KPLYVA+AQ
Sbjct: 322 RQNFESYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQ 381
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPVHP-TLY 267
K +R + L Y ++ + N P T+Y
Sbjct: 382 RKEDRKAQLASQYMQRLASIRMHNAGAMPGTMY 414
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 112/199 (56%), Gaps = 18/199 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV ++ SKGYGFV + T+ESA AIEK+
Sbjct: 110 FIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKVNG 169
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+EG ++Y RA R++E + N+++KN D++D+ +
Sbjct: 170 MLLEGKKVYVGKFQPRAARMREMGETARRFT--------------NVFIKNFADELDKEK 215
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF--HQKPLYVA 232
L++ F++ G I+S +M G SKGFGFV F NP++A +A+N ++ ++ LYV
Sbjct: 216 LEKLFAKFGKITSCAVMSDADGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERKLYVC 275
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER++ L+ Y +Q
Sbjct: 276 RAQKKNERSAELKRRYEQQ 294
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ SKG+GFV F + A +AI +
Sbjct: 108 NIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEESNSKGYGFVHFETEESAQKAIEKV 167
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L K +YV Q + R
Sbjct: 168 NGMLLEGKKVYVGKFQPRAAR 188
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 130 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 189
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 190 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 247
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 248 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 306
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 307 KEERQAHLTNQYMQRMASVRAVPNPV 332
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 38 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 96
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 97 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 144
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 145 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 204
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 205 KVERQTELK 213
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAEL 119
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 117/199 (58%), Gaps = 11/199 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG QS KV+ +G+S+G+GF+ + E A A++ +
Sbjct: 194 YVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ A N +K + + +E ++ NLYVKN++D +++
Sbjct: 254 KEVSGQLLYV-----GRAQKRAERQN-ELKRRFEQMKQERQNRYQGVNLYVKNLDDSIND 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ FS G+I+S K+M T SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 DRLKEVFSTYGVITSAKVM-TESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQ 251
+AQ K ER + L Y ++
Sbjct: 367 LAQRKEERKAILTNQYRRR 385
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + L N+YVKN+ D+DE L+
Sbjct: 161 MLLNDRKVFVGHFKSRQKREA----ELGARALGFT--------NIYVKNLRVDMDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G SVK+MR + G S+GFGF+ F +EA +A++ +NG + LYV AQ
Sbjct: 209 DLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RAERQNELK 277
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L+++FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ + +D L
Sbjct: 74 FEMIKGQPI--------RIMWSHRDPGLRRSGMG----------NIFIKNLENSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++++R + L
Sbjct: 175 SRQKREAEL 183
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 38/121 (31%)
Query: 138 ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TN 194
S ++LYV +L DVTE + L + FS G I S+++ R T
Sbjct: 8 CSLSSLYVGDLHPDVTEAM------------------LYEMFSPIGTILSIRVCRDVATR 49
Query: 195 RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPG 254
R + G+ ++ F P +A RA++T+N + +P +RIM++ + PG
Sbjct: 50 RSL--GYAYINFQQPADAERALDTMNFEMIKGQP---------------IRIMWSHRDPG 92
Query: 255 L 255
L
Sbjct: 93 L 93
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 230 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 289
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 290 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 347
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 348 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 406
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 407 KEERQAHLTNQYMQRMASVRAVPNPV 432
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 138 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 196
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 197 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 244
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 245 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 304
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 305 KVERQTELK 313
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 136 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 194
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 195 NGMLLNDRKVFVGRFKSRKEREAEL 219
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 214 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 273
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 274 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 331
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 332 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 390
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 391 KEERQAHLTNQYMQRMASVRAVPNPV 416
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 122 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 180
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 181 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 228
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 229 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 288
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 289 KVERQTELK 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 120 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 178
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 179 NGMLLNDRKVFVGRFKSRKEREAEL 203
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L++ FS G I S +V +S GY +V + A A++ + ++G +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV---- 82
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
RI S +L + N+++KN++ +D L FS G I S
Sbjct: 83 ----RIMWSQRDPSLRKSGVG----------NIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
K++ G SKG+GFV F + A RAI +NG+L + + ++V ++++ER + L
Sbjct: 129 KVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------VRIMWSQRDPSL 93
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 123/217 (56%), Gaps = 19/217 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IFS+FG S KV++ +G+SKG+GFV + E A A+ +
Sbjct: 194 YIKNFGDDMDDDRLREIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G LY GR Q+ + +K + + +E +++ NLYVKN++D +D+
Sbjct: 254 KEINGRLLYV-----GRAQKRLERQS-ELKRKFEQMKQERVNRYQGVNLYVKNLDDGIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 ERLRKEFSPYGTITSAKVM-TEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQ--------GPGLASTNFP 261
+AQ K ER + L Y ++ GP L S P
Sbjct: 367 LAQRKEERKAILTNQYMQRLATMRALPGPLLGSFQTP 403
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 106/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G S+GYGFV + T E+A AIE
Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIE---- 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
T+ GM L + G + K + +V ++ N+Y+KN DD+D+ L
Sbjct: 157 -TMNGMLLNDRKVFVGHFKSR--------KEREAEVGARAIEFTNVYIKNFGDDMDDDRL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS+ G SVK+M N G SKGFGFV F +EA +A+ +NG + + LYV AQ
Sbjct: 208 REIFSRFGKTLSVKVMMDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER S L+
Sbjct: 268 KRLERQSELK 277
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 32/193 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
++G + P LR + N+++KNLD D
Sbjct: 74 FEVIKGRPIRIMWSQRDPGLR------KSGVGNVFIKNLD------------------DS 109
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D L FS G I S K++ G S+G+GFV F + A RAI T+NG+L + + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKV 168
Query: 230 YVAIAQTKRERTS 242
+V ++++ER +
Sbjct: 169 FVGHFKSRKEREA 181
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 211 YIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEM-- 268
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 269 ---NGKEMSGKAIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 324
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 325 EKLRREFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 383
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 384 LAQRKEERKAHLTNQYMQRVAGM 406
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 119 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 177
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 178 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDGNLK 225
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR + G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 226 ELFSQFGKTLSVKVMRDSSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 285
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 286 KVERQAELK 294
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 86
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 87 DTMNFDVMKGKP---------------IRIMWSQRDPSL 110
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S ++ + +S GY +V Y
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPR 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
+ A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DSERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 152/322 (47%), Gaps = 51/322 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + + KL + F++ G + S ++ ++GKSKG+GFV Y E A A+EKL
Sbjct: 218 YVKNLSENLSDEKLREKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLDG 277
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T E + + + + A + + + + E++ NLY+KN+ D D+ +L+
Sbjct: 278 YT-EDEKTWVVCRAQKKAEREAELKAKFDQERRERM-EKMAGANLYIKNLEDGTDDEKLR 335
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G I+S ++MR G+S+G FV FS+PDEA RA+ +NG + KPLYVA+AQ
Sbjct: 336 ELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQR 395
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSP 296
K ER L+ +A++ PG P Y V AP + + PPP+
Sbjct: 396 KEERRMRLQAQFAQRMPG---AGMPGGMAPYMPPPGVPGAPMY---------YGQPPPA- 442
Query: 297 LFLTRAGQAAANNLTNG--------------NQR-------------------AAANNSM 323
AGQ N R A S
Sbjct: 443 ---GHAGQGVPGAQRGRGGRGGPAGGRGQRQNMRYNAAAAMPMPPMPAEAANPMAILASQ 499
Query: 324 LAVASPDERKDILGQGLYPLVK 345
L+ A+PD+++ ILG+ LYPL++
Sbjct: 500 LSAAAPDQQRMILGEALYPLIE 521
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 107/195 (54%), Gaps = 15/195 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L F++FG I S+KV + G SKGYGFVQ+ TQE+A AI+
Sbjct: 128 FIKNLDKAIDNKALLDTFAQFGTITSAKVAMDGQGNSKGYGFVQFETQEAAQAAID---- 183
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GMEL + G Q A +N T E N+YVKN+++++ + +L+
Sbjct: 184 -NVNGMELNDKQVYVGPFQRRAERSN----------TGEAKFNNVYVKNLSENLSDEKLR 232
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G ++S IMR G SKGFGFVC+ P+ A A+ L+G +K V AQ
Sbjct: 233 EKFAEHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAVEKLDGYTEDEKTWVVCRAQK 292
Query: 237 KRERTSYLRIMYAKQ 251
K ER + L+ + ++
Sbjct: 293 KAEREAELKAKFDQE 307
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 93/188 (49%), Gaps = 23/188 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L +++ +L++ FS G + S +V ++++ +S GY +V + + A +AI+
Sbjct: 40 YVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITR--RSLGYAYVNFQSPNDAAHAIDV 97
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + G + R+ LY + D N+++KN++ +D
Sbjct: 98 LNFQVINGKPI--------RV--------LYSQR--DPAVRRSGVGNIFIKNLDKAIDNK 139
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+Q G I+S K+ +G SKG+GFV F + A AI+ +NG+ + K +YV
Sbjct: 140 ALLDTFAQFGTITSAKVAMDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVGP 199
Query: 234 AQTKRERT 241
Q + ER+
Sbjct: 200 FQRRAERS 207
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 23/104 (22%)
Query: 135 QESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-- 192
Q A ++LYV +L+ VT E +L + FS G + S+++ R
Sbjct: 31 QPGAGTSSLYVGDLETSVT------------------EAQLYEKFSSIGPVVSIRVCRDL 72
Query: 193 -TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
T R + G+ +V F +P++A AI+ LN + + KP+ V +Q
Sbjct: 73 ITRRSL--GYAYVNFQSPNDAAHAIDVLNFQVINGKPIRVLYSQ 114
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 123 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 182
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 183 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 240
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 241 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 299
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 300 KEERQAHLTNQYMQRMASVRAVPNPV 325
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 31 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 89
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 90 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 137
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 138 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 197
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 198 KVERQTELK 206
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAEL 112
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 123 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 182
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 183 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 240
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 241 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 299
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 300 KEERQAHLTNQYMQRMASVRAVPNPV 325
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 31 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 89
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 90 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 137
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 138 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 197
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 198 KVERQTELK 206
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAEL 112
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + E A A+E++
Sbjct: 194 YIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KDINGKMVFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+PDEA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGM 389
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDGRLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M G SKGFGFV F ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 198 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 257
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 258 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 315
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 316 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 374
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 375 KEERQAHLTNQYMQRMASVRAVPNPV 400
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 106 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 164
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 165 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 212
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 213 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 272
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 273 KVERQTELK 281
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 16/199 (8%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S ++ + +S GY +V Y
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPV 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A+E L ++G R RI S +L + V N+++KN
Sbjct: 64 DAKRALETLNFDVIKG--------RPVRIMWSQRDPSLRKSGVGGGVG------NIFIKN 109
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 110 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 168
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 169 DRKVFVGRFKSRKEREAEL 187
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 119/203 (58%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IF K+G S KV+ GKS+G+GFV Y E A A+E++
Sbjct: 194 YIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G EL ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 252 ---NGTELNGKTVFVGRAQKKME-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGM 389
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G S+GFGFV + ++AN+A+ +NG + K ++V AQ
Sbjct: 209 EIFDKYGKTLSVKVMTDPSGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KMERQAELK 277
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L I L++ FS G + S +V +S GY +V +S A A++ +
Sbjct: 14 YVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V+G + RI S +L + N+++KN++ +D L
Sbjct: 74 FDVVKGKPI--------RIMWSQRDPSLRKSGVG----------NVFIKNLDKSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G SKG+ FV F D A+RAI +NG+L + + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 236 TKRERTSYL 244
+++ER + L
Sbjct: 175 SRKEREAEL 183
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V FS P +A RA+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFSQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVVKGKP---------------IRIMWSQRDPSL 93
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 116/209 (55%), Gaps = 9/209 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL ++FSK+G S +V+ GKSKG+GFV + E A A++ +
Sbjct: 194 YIKNFGEDMDDEKLKELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
+ G ++Y GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KELNGRQVYV-----GRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 RLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPV 262
AQ K ER ++L Y ++ + + PV
Sbjct: 368 AQRKEERQAHLTNQYMQRMATVRAVPNPV 396
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM-- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + N+Y+KN +D+D+ +L
Sbjct: 159 ---NGMLLNDRKVFVGRFKSR--------KEREAELGARAREFTNVYIKNFGEDMDDEKL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ FS+ G S+++M + G SKGFGFV F ++A +A++ +NG + + +YV AQ
Sbjct: 208 KELFSKYGPALSIRVMTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQ 267
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 268 KKGERQNELK 277
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G L RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGRPL--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 119/219 (54%), Gaps = 13/219 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + L + F++FG I S + ++ +GY FV + E A A E
Sbjct: 204 YMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE---- 259
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL---DKNLYVKNINDDVDEI 173
TV G + + L GR Q+ A L + + E+ + N+YVKN+N V E
Sbjct: 260 -TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEE 318
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
EL+++FSQCG I+S K+M +G SKGFGFVCFS P+EA A+ T +G +FH KPLYVAI
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378
Query: 234 AQTKRERTSYLRIMY-----AKQGPGLASTNFPVHPTLY 267
AQ K +R L++ + A++ AS N + LY
Sbjct: 379 AQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLY 417
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 105/195 (53%), Gaps = 16/195 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++ N L +F KFG+I S KV +DGKS+GYGFVQ+ +++A AI+ L +
Sbjct: 115 FVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNS 174
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V E+Y G+ + D V E NLY+KN++ DV E L+
Sbjct: 175 TIVADKEIYV-----GKFMKKT-----------DRVKPEEKYTNLYMKNLDADVSEDLLR 218
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G I S+ I + + +G+ FV F NP++A RA T+NG F K LYV AQ
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQK 278
Query: 237 KRERTSYLRIMYAKQ 251
K ER LR + ++
Sbjct: 279 KAEREQLLREQFKEK 293
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 109/198 (55%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ LH FS FG+I S KV V G+SKGYGFVQY+ +ESA AIEKL
Sbjct: 111 FIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 170
Query: 117 ATVEGMELY-APSLRAGRIQESAS---FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR +A+ F N+YVKNL + T++
Sbjct: 171 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDD----------------- 213
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F + G I+S +M+ G SKGFGFV F N D+A RA+ +LNG F K YV
Sbjct: 214 -DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVG 272
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER + LR+ Y +
Sbjct: 273 RAQKKSERETELRVRYEQ 290
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 160/364 (43%), Gaps = 82/364 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA + + L F ++G I S+ V+ +GKSKG+GFV + + A A+E L
Sbjct: 202 YVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNN----LYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ E Y GR Q+ + Y +NL + ++ NLYVKN++ + +
Sbjct: 262 HKFDDKEWYV-----GRAQKKSERETELRVRYEQNLKE-AADKFQSSNLYVKNLDPSISD 315
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS G ++S K+MR G SKG GFV F+ P+EA A++ L+G + KPLYVA
Sbjct: 316 EKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVA 375
Query: 233 IAQTKRERTSYLRI-------------------MYAKQGPGLASTNF---------PVHP 264
IAQ K +R L+ +Y GPG+ F P P
Sbjct: 376 IAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQP 435
Query: 265 TL-YQRALQVYQAPGFRHGGMIPNGFSSP------------------------------- 292
YQ+ L PG R GG F P
Sbjct: 436 GYGYQQQL----VPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQHSQQQNPMMQQQ 491
Query: 293 --PPSPLFLTRAGQAAANNLTN---GNQRA---AANNSMLAVASPDERKDILGQGLYPLV 344
P +F G+ + ++ GN A S L+ A+P++++ +LG+ LYPLV
Sbjct: 492 MHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLV 551
Query: 345 KKLK 348
++++
Sbjct: 552 EQVE 555
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 22/175 (12%)
Query: 72 QIFSKFGDIQSSKVV-VSQD---GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
Q+F FG + + V V +D +S GYG+V ++ + A AI++L + LY
Sbjct: 35 QLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNY-----IPLYGK 89
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS 187
+R +Y D N+++KN+++ +D L FS G I S
Sbjct: 90 PIRV-----------MYSHR--DPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVS 136
Query: 188 VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
K+ + G SKG+GFV ++N + A +AI LNG+L + K +YV ++ER S
Sbjct: 137 CKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDS 191
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V + +L F Q G + +V++ R T R + G+G+V F+NP +A RAI
Sbjct: 21 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSL--GYGYVNFTNPQDAARAI 78
Query: 217 NTLNGILFHQKPLYV 231
LN I + KP+ V
Sbjct: 79 QELNYIPLYGKPIRV 93
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 109/198 (55%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ LH FS FG+I S KV V G+SKGYGFVQY+ +ESA AIEKL
Sbjct: 127 FIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 186
Query: 117 ATVEGMELY-APSLRAGRIQESAS---FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR +A+ F N+YVKNL + T++
Sbjct: 187 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDD----------------- 229
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F + G I+S +M+ G SKGFGFV F N D+A RA+ +LNG F K YV
Sbjct: 230 -DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVG 288
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER + LR+ Y +
Sbjct: 289 RAQKKSERETELRVRYEQ 306
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 160/364 (43%), Gaps = 82/364 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA + + L F ++G I S+ V+ +GKSKG+GFV + + A A+E L
Sbjct: 218 YVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Query: 117 ATVEGMELYAPSLRAGRIQESASFNN----LYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ E Y GR Q+ + Y +NL + ++ NLYVKN++ + +
Sbjct: 278 HKFDDKEWYV-----GRAQKKSERETELRVRYEQNLKE-AADKFQSSNLYVKNLDPSISD 331
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS G ++S K+MR G SKG GFV F+ P+EA A++ L+G + KPLYVA
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVA 391
Query: 233 IAQTKRERTSYLRI-------------------MYAKQGPGLASTNF---------PVHP 264
IAQ K +R L+ +Y GPG+ F P P
Sbjct: 392 IAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQP 451
Query: 265 TL-YQRALQVYQAPGFRHGGMIPNGFSSP------------------------------- 292
YQ+ L PG R GG F P
Sbjct: 452 GYGYQQQL----VPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQHSQQQNPMMQQQ 507
Query: 293 --PPSPLFLTRAGQAAANNLTN---GNQRA---AANNSMLAVASPDERKDILGQGLYPLV 344
P +F G+ + ++ GN A S L+ A+P++++ +LG+ LYPLV
Sbjct: 508 MHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLV 567
Query: 345 KKLK 348
++++
Sbjct: 568 EQVE 571
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 23/212 (10%)
Query: 36 CSALIASIDVHSAMATPTFIPFTVNLASTID-NWKLHQIFSKFGDIQSSKVV-VSQD--- 90
+A + S S AT T T +D N Q+F FG + + V V +D
Sbjct: 14 STAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVT 73
Query: 91 GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD 150
+S GYG+V ++ + A AI++L + LY +R +Y D
Sbjct: 74 RRSLGYGYVNFTNPQDAARAIQELNY-----IPLYGKPIRV-----------MYSHR--D 115
Query: 151 DVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPD 210
N+++KN+++ +D L FS G I S K+ + G SKG+GFV ++N +
Sbjct: 116 PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEE 175
Query: 211 EANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
A +AI LNG+L + K +YV ++ER S
Sbjct: 176 SAQKAIEKLNGMLLNDKQVYVGPFLRRQERDS 207
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 121/207 (58%), Gaps = 5/207 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++DD+D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRKFEQMKQDRITRYQVV--NLYVKNLDDDIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPV 262
K +R ++L Y ++ + + PV
Sbjct: 370 RKEDRQAHLTNEYMQRMASVRAVPNPV 396
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L V E N+Y+KN +D+D+ LK
Sbjct: 161 TLLNDRKVFVGRFKSRKEREA---------ELGAKVKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 93/196 (47%), Gaps = 24/196 (12%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS+ G I S +V V+++ +S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITR--RSSSYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A++ + ++G + RI S +L + N++VKN++
Sbjct: 67 HALDTMNFDVIKGKPV--------RIMWSQRDPSLRRSGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G I S K++ G SKG+GFV F + A RAI +NG L + +
Sbjct: 109 SINNKVLYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGTLLNDRK 167
Query: 229 LYVAIAQTKRERTSYL 244
++V ++++ER + L
Sbjct: 168 VFVGRFKSRKEREAEL 183
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +++D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEMDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDIKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDIKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 128/256 (50%), Gaps = 25/256 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLD---DDVTEEILDKNLYVKNINDDVDEI 173
V G LY GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 MQVSGRLLYV-----GRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ--------GPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMI 285
AQ K ER + L Y ++ GP L S P L A QA H G
Sbjct: 368 AQRKEERKAILTNQYMQRLSTMRALGGPFLGSFQQPTSYFLPAMAQPPAQA---EHYGSS 424
Query: 286 PNGFSSP-----PPSP 296
P+ +P PP P
Sbjct: 425 PSRQPAPRWTTQPPRP 440
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 105/197 (53%), Gaps = 15/197 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAISTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L T N+YVKN+ VDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA---------ELGARATAFT---NIYVKNLPGHVDERGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR + G S+GFGFV F +EA +A+ +NG+ + LYV AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQK 268
Query: 237 KRERTSYL--RIMYAKQ 251
+ ER + L R + KQ
Sbjct: 269 RGERQNELKRRFEHTKQ 285
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 32/195 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
++G + P LR + N+++KNL+ D
Sbjct: 74 FEVIKGQPIRIMWSQRDPGLR------KSGVGNVFIKNLE------------------DS 109
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D L FS G I S K++ + G S+GFGFV F + A +AI+T+NG+L + + +
Sbjct: 110 IDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAISTMNGMLLNDRKV 168
Query: 230 YVAIAQTKRERTSYL 244
+V +++RER + L
Sbjct: 169 FVGHFKSRREREAEL 183
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGQP---------------IRIMWSQRDPGL 93
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 119/206 (57%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL IFSK+G+ S +V+ ++GKS+G+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KEMNGKLIYVG--RAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVM-MDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ +LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDDKLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G S+++M G S+GFGFV F ++A RA++ +NG + K +YV AQ
Sbjct: 209 DIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G R RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKG--------RPVRIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 149 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 208
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 209 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 266
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 267 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTGMNGRIVATKPLYVALAQR 325
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 326 KEERQAHLTNQYMQRMASVRAVPNPV 351
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 105/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 57 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM-- 113
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + N+Y+KN +D+D+ L
Sbjct: 114 ---NGMLLNDRKVSVGRFKSR--------KEREAELGARAKEFTNVYIKNFGEDMDDERL 162
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 163 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 222
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 223 KKVERQTELK 232
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 113
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + + V ++++ER + L
Sbjct: 114 NGMLLNDRKVSVGRFKSRKEREAEL 138
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 108/337 (32%), Positives = 156/337 (46%), Gaps = 57/337 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + ++F FG I S + QDGKSKG+GFV Y T ESA+ A+E+L
Sbjct: 111 YVKNIDLEFSDEEFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELND 170
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ G ++Y GR Q+ K + E + NL+VKN++D +D
Sbjct: 171 KEINGQKIYV-----GRAQKKRERMEELKKQYESTRVERLSKYQGVNLFVKNLDDSIDSE 225
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F G I+S K+M G SKGFGFVCFS+P+EA +AI +N + KPLYVA+
Sbjct: 226 KLEEEFKPFGSITSAKVMVDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVAL 285
Query: 234 AQTKRERTSYLR---------------------------IMYAKQG----PGLASTNFP- 261
AQ K R S L + Y +QG G + FP
Sbjct: 286 AQRKDVRRSQLEQQIQARNQMRMQNAAASGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPG 345
Query: 262 VHPTLYQRALQVYQAPGF--RHGGMIPNGFSSP----PP-------SPLF-LTRAGQAAA 307
+P + R Q + P R G PNG P PP P+ R G
Sbjct: 346 PNPQMMMRRGQQFPGPEQWPRPG---PNGQPVPVYGIPPQFQDFNGQPMRQQQRGGYYPN 402
Query: 308 NNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLV 344
N G ++ +++A A PD++K ILG+ LYP +
Sbjct: 403 RNQNKGGRQQKDLAAIIANAPPDQQKRILGEELYPKI 439
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV G+SK +GFV Y T E+A AIE +
Sbjct: 18 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNG 77
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ E+Y + + +ES A++ N+YVKN+D + ++E
Sbjct: 78 MLLNDREVYVGKHISKKDRESKFEEMKANYTNIYVKNIDLEFSDE--------------- 122
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E ++ F G I+S+ + + G SKGFGFV + + A +A+ LN + + +Y
Sbjct: 123 ---EFEKLFVPFGTITSIYLEKDQDGKSKGFGFVNYETHESAVKAVEELNDKEINGQKIY 179
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ KRER L+ Y
Sbjct: 180 VGRAQKKRERMEELKKQY 197
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
D N+++KN++ +D L FS G I S K+ + G SK FGFV + + A AI
Sbjct: 14 DGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIE 73
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
+NG+L + + +YV +K++R S M A
Sbjct: 74 NVNGMLLNDREVYVGKHISKKDRESKFEEMKA 105
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEMDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +++D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEMDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 207 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 266
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 267 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 320
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 321 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 379
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 380 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 431
Query: 291 SPP 293
PP
Sbjct: 432 RPP 434
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 115 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 173
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 174 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 221
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 222 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 281
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 282 KVERQAELK 290
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 240 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 299
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 300 KELNGKQIYVG--RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 357
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 358 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 416
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 417 KEERQAHLTNQYMQRMASVRAVPNPV 442
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 148 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 206
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 207 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 254
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 255 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 314
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 315 KVERQTELK 323
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 102/206 (49%), Gaps = 25/206 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 31 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM-- 87
Query: 117 ATVEGMELYAPSLRAGRIQESASF----NNLYVKNLD--------------DDVTEEILD 158
GM L A I F L N D D +
Sbjct: 88 ---NGMLLNXXXXEASNIDSENVFPAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGV 144
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI
Sbjct: 145 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEK 203
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYL 244
+NG+L + + ++V ++++ER + L
Sbjct: 204 MNGMLLNDRKVFVGRFKSRKEREAEL 229
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 220 NGILFH 225
NG+L +
Sbjct: 88 NGMLLN 93
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 118/210 (56%), Gaps = 9/210 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYVG--RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYL------RIMYAKQGPGLASTNF 260
K ER ++L R+ + P AST+F
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPASTSF 400
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 32/205 (15%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDK 159
A A++ + ++G + PSLR +
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGV------------------------G 99
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEL 183
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/300 (34%), Positives = 154/300 (51%), Gaps = 46/300 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKF-----GDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI 111
+ NL +D W L ++FS+F G + S KV+ G S+G+GFV + E A A+
Sbjct: 194 YVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAV 253
Query: 112 EKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK------NLYVKN 165
+ V G LY GR Q+ N +K + + ++ L++ NLYVKN
Sbjct: 254 MDMNGKEVRGRLLYV-----GRAQKRMERQN-ELKRKFEQMKQDRLNRYHVRGVNLYVKN 307
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++D +++ +L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG +
Sbjct: 308 LDDSINDEKLRKEFSPYGMITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVG 366
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMI 285
KPLYVA+AQ K ER + L Y ++ L++ RAL GG +
Sbjct: 367 TKPLYVALAQRKEERKAILTNQYMQR---LSTV----------RAL----------GGPL 403
Query: 286 PNGFSSPPPSPLFLTRAGQAAANNLT-NGNQRAAANNSMLAVASPDERKDILGQGLYPLV 344
F P+ FL Q + G + A SMLA A E+K ++G+ LYPL+
Sbjct: 404 LGSFQQ--PANYFLPAVPQVQEPAVCIPGKEPLTA--SMLAAAPLHEQKQMIGERLYPLI 459
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 105/195 (53%), Gaps = 20/195 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV G S+G+GFV + T E+A AI
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQLAI----- 155
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
+T+ GM L + G + + + ++ ++ N+YVKN+ D+DE L
Sbjct: 156 STMNGMLLNDRKVFVGHFKSR--------QEREAELGARAMEFTNIYVKNLQVDMDEWGL 207
Query: 176 KQYFSQC-----GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
++ FSQ G + SVK+MR + G S+GFGFV F +EA +A+ +NG + LY
Sbjct: 208 QELFSQFDWSSPGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLY 267
Query: 231 VAIAQTKRERTSYLR 245
V AQ + ER + L+
Sbjct: 268 VGRAQKRMERQNELK 282
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 20/176 (11%)
Query: 70 LHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L++ FS G I S +V +S GY ++ + A A++ + ++G +
Sbjct: 27 LYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPI---- 82
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
RI S L + N+++KN+ D +D L FS G I S
Sbjct: 83 ----RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
K++ + G S+GFGFV F + A AI+T+NG+L + + ++V ++++ER + L
Sbjct: 129 KVVCDDHG-SRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAEL 183
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 38/120 (31%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGPILSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL +
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEVIKGQP---------------IRIMWSQRDPGLRKS 96
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 216 YIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM-- 273
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 274 ---NGKEMSGKAIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 329
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 330 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 388
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 389 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILSQFQPAAGGYFVPA------VPQAQG 440
Query: 291 SPP 293
PP
Sbjct: 441 RPP 443
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 124 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 182
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 183 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDDNLK 230
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 231 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 290
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 291 KVERQAELK 299
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 34 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 91
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 92 DTMNFDVIKGKP---------------IRIMWSQRDPSL 115
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 32/195 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S + L++ FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
++G + PSLR + N+++KNLD K+I++
Sbjct: 74 FDVIKGKPIRIMWSQRDPSLR------KSGVGNVFIKNLD--------------KSIDNK 113
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
V L FS G I S K++ G SKG+ FV F + A++AI +NG+L + + +
Sbjct: 114 V----LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168
Query: 230 YVAIAQTKRERTSYL 244
+V ++++ER + L
Sbjct: 169 FVGRFKSRKEREAEL 183
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL +IF K+G S +V+ GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KEMNGKQVYV--GRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTSQYMQRMASVRAVPNPV 396
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 107/190 (56%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM-- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + N+Y+KN +D+D+ +L
Sbjct: 159 ---NGMLLNDRKVFVGRFKSR--------KEREAEMGARAKEFTNVYIKNFGEDMDDEKL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F + G S+++M + G SKGFGFV F ++A RA++ +NG + K +YV AQ
Sbjct: 208 KEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQ 267
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 268 KKGERQTELK 277
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G R RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKG--------RPVRIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + +
Sbjct: 165 DRKVFVGRFKSRKEREAEM 183
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 125/238 (52%), Gaps = 23/238 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + + +FS+FG I S+ + ++G SKG+GFV + E A A+E+L
Sbjct: 258 YVKNLDTEVGEEEFEGLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELDN 317
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
+ G ++ GR Q+ + K + E+ NLY+KN+ DDVD+
Sbjct: 318 KEIHGKPVFV-----GRAQKKSEREEELRKQYEQAKYEKAGKYQGSNLYIKNLEDDVDDE 372
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G I+S K+MR +G SKGFGFVCFS+PDEA RA++ +N + KPLYVA+
Sbjct: 373 KLRAEFEPFGTITSCKVMRDEKGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYVAL 432
Query: 234 AQTK-----------RERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFR 280
AQ K +R + LR+ A+ G+ + + P YQ A Y PG R
Sbjct: 433 AQRKDVRKQQLESQIAQRNNQLRLAAAQ---GIPNMPYGAAPMFYQPAAAGY-PPGQR 486
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 98/194 (50%), Gaps = 12/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG + S KV G SKGYGFV Y + E+A AI+
Sbjct: 165 FIKNLDQGIDNKALHDTFAAFGTVLSCKVATDDSGLSKGYGFVHYDSNEAAEAAIK---- 220
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ S + + T NLYVKN++ +V E E +
Sbjct: 221 -AVNGMLLNDKKVFVGQ-HISRKERQSKIDEMKSHFT------NLYVKNLDTEVGEEEFE 272
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G I+S I + G SKGFGFV F N ++A RA+ L+ H KP++V AQ
Sbjct: 273 GLFSQFGPITSAVIQKDEEGNSKGFGFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQK 332
Query: 237 KRERTSYLRIMYAK 250
K ER LR Y +
Sbjct: 333 KSEREEELRKQYEQ 346
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 23/194 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L + L +IF+ G + S V V +D +S GY +V Y A+++
Sbjct: 77 YVGELDPQVTEAMLFEIFNMIGPVAS--VRVCRDAVTRRSLGYAYVNYLNYNDGERALDQ 134
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + + G + RI S D + N+++KN++ +D
Sbjct: 135 LNYSQIRG--------KPCRIMWSQR----------DPGLRKTGQGNIFIKNLDQGIDNK 176
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G + S K+ + G+SKG+GFV + + + A AI +NG+L + K ++V
Sbjct: 177 ALHDTFAAFGTVLSCKVATDDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQ 236
Query: 234 AQTKRERTSYLRIM 247
+++ER S + M
Sbjct: 237 HISRKERQSKIDEM 250
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + F+ G ++SV++ R T R + G+ +V + N ++ RA+
Sbjct: 75 SLYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSL--GYAYVNYLNYNDGERAL 132
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
+ LN KP RIM++++ PGL T
Sbjct: 133 DQLNYSQIRGKP---------------CRIMWSQRDPGLRKT 159
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+ + R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEITGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEITGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 141 bits (355), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 116/198 (58%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + + ++F+++G++ SS V ++GKSKG+GFV Y E A A+++L+
Sbjct: 226 YIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELHD 285
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
++G +L+ R Q+ A + ++ + E++ NLY+KN+ DD D+
Sbjct: 286 TDLKGKKLFV-----ARAQKKAEREDELRRSYEQAKLEKLSKYQGVNLYIKNLEDDFDDD 340
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G I+S K+MR +G SKGFGFVCFS+PDEA +A+ +N + KPLYV++
Sbjct: 341 KLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 400
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 401 AQRREVRRQQLESQIAQR 418
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 23/206 (11%)
Query: 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQ 104
A P+ + L T+ L +IF+ G + S + V +D +S GY +V Y
Sbjct: 36 ASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNA 93
Query: 105 ESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVK 164
A+E+L + ++ RA RI S D + N+++K
Sbjct: 94 ADGERALEQLNYSLIKN--------RACRIMWSQR----------DPALRKTGQGNVFIK 135
Query: 165 NINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF 224
N+++ +D L F G + S K+ G SKG+GFV + + A+ AI ++NG+L
Sbjct: 136 NLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLL 195
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAK 250
+ K +YV +++ER S L M A+
Sbjct: 196 NDKKVYVGHHISRKERQSKLDEMKAQ 221
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 119/213 (55%), Gaps = 3/213 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N A +D L ++F KFG I S+ V+V DGKSKG+GFV + E A A+ +++
Sbjct: 202 YIKNFADELDKEALEKLFFKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHE 261
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G E RA + E SA Y + + + + NLYVKN++D V++ L
Sbjct: 262 YELPGTERKLYVCRAQKKNERSAELKRRYEQQKVERM-QRYQGVNLYVKNLDDTVNDDIL 320
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
KQ F G I+S K+M + G SKGFGFVCF PDEA +A+ +NG + KPLYVA+AQ
Sbjct: 321 KQNFEAYGKITSAKVMCDDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQ 380
Query: 236 TKRERTSYLRIMYAKQGPGLASTNF-PVHPTLY 267
K +R + L Y ++ + N +H T+Y
Sbjct: 381 RKEDRKAQLASQYMQRLASIRMHNAGTMHGTVY 413
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 18/199 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV ++ SKGYGFV + T+ESA AIEK+
Sbjct: 109 FIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKVNG 168
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+EG ++Y R R++E + N+Y+KN D++D+
Sbjct: 169 MLLEGKKVYVGKFQPRMARLREMGETTRRFT--------------NVYIKNFADELDKEA 214
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF--HQKPLYVA 232
L++ F + G I+S +M G SKGFGFV F NP++A +A+ ++ ++ LYV
Sbjct: 215 LEKLFFKFGKITSAAVMVDADGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVC 274
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER++ L+ Y +Q
Sbjct: 275 RAQKKNERSAELKRRYEQQ 293
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ SKG+GFV F + A +AI +
Sbjct: 107 NIFIKNLDKSIDNKAIYDTFSMFGNILSCKVANDEELNSKGYGFVHFETEESAQKAIEKV 166
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L K +YV Q + R
Sbjct: 167 NGMLLEGKKVYVGKFQPRMAR 187
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEITGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 116/198 (58%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + + ++F+++G++ SS V ++GKSKG+GFV Y E A A+++L+
Sbjct: 226 YIKNLDTEVTQEEFTELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELHD 285
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
++G +L+ R Q+ A + ++ + E++ NLY+KN+ DD D+
Sbjct: 286 TDLKGKKLFV-----ARAQKKAEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDFDDD 340
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G I+S K+MR +G SKGFGFVCFS+PDEA +A+ +N + KPLYV++
Sbjct: 341 KLRAEFEPFGAITSCKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 400
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 401 AQRREVRRQQLESQIAQR 418
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 23/206 (11%)
Query: 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQ 104
A P+ + L T+ L +IF+ G + S + V +D +S GY +V Y
Sbjct: 36 ASTAPSASLYVGELDPTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNA 93
Query: 105 ESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVK 164
A+E+L + ++ RA RI S D + N+++K
Sbjct: 94 ADGERALEQLNYSLIKN--------RACRIMWSQR----------DPALRKTGQGNVFIK 135
Query: 165 NINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF 224
N+++ +D L F G + S K+ G SKG+GFV + + A+ AI ++NG+L
Sbjct: 136 NLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADNAIKSVNGMLL 195
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAK 250
+ K +YV +++ER S L M A+
Sbjct: 196 NDKKVYVGHHISRKERQSKLDEMKAQ 221
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 169 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 228
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 229 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 282
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 283 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 341
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 342 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 393
Query: 291 SPP 293
PP
Sbjct: 394 RPP 396
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 77 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 135
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 136 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 183
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 184 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 243
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 244 KVERQAELK 252
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 123/218 (56%), Gaps = 11/218 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D +L +FS+FG + S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ N +K + + ++ L + NLYVKN++D +D+
Sbjct: 254 REVSGRLLYV-----GRAQKRVERQN-ELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRA 270
+AQ K ER + L Y ++ + + PV + Q A
Sbjct: 367 LAQRKEERKAILTNQYMQRLSTMRALGGPVLGSFQQPA 404
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T E+A NAI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E L + ++ N+YVKN++ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREV----ELGARAMEFT--------NIYVKNLHVDVDEQRLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR + G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEVIKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + A AI+T+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER L
Sbjct: 175 SRREREVEL 183
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLPPDVTEAM----LYEK--------------FSPAGPILSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEVIKGQP---------------IRIMWSQRDPGL 93
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 140/272 (51%), Gaps = 26/272 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L +F KFG I S +V+ ++DGKS+G+GFV + E A A++KL
Sbjct: 186 YVKNFGEDLTEEALRDMFEKFGPITSHRVM-TKDGKSRGFGFVAFEKPEDAEEAVQKLNG 244
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ +G LY GR Q+ + +K + + E L + NLYVKN++D +D
Sbjct: 245 KELSDGKVLYV-----GRAQKKNE-RQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTID 298
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M + G SKGFGFVCFS PDEA +A+ +NG + KPLYV
Sbjct: 299 DERLRKEFAPYGTITSAKVM-LDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYV 357
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPG--FRHGGMIPNGF 289
A+AQ K ER S+L Y ++ V+ Q QVYQ G F P F
Sbjct: 358 ALAQRKEERKSHLASQYIQR----------VNSLRMQHIGQVYQQSGSYFMPTIAQPQRF 407
Query: 290 SSPPPSPLFLTRAGQAAANNLTN-GNQRAAAN 320
P +P+ A A N GNQ AAN
Sbjct: 408 YGPQVAPVRTAPRWSANAQMRPNAGNQNVAAN 439
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G+SKGYGFV + T+ESA +IEK
Sbjct: 93 FIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEK--- 149
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L + GR + K + ++ E+ L N+YVKN +D+ E L
Sbjct: 150 --VNGMLLNEKKVYVGRF--------ISRKEREKELGEKAKLFTNVYVKNFGEDLTEEAL 199
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIA 234
+ F + G I+S ++M T G S+GFGFV F P++A A+ LNG L K LYV A
Sbjct: 200 RDMFEKFGPITSHRVM-TKDGKSRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVLYVGRA 258
Query: 235 QTKRERTSYLR 245
Q K ER L+
Sbjct: 259 QKKNERQMELK 269
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L S I L + FS G + S +V ++++ +S GY +V + A A++
Sbjct: 5 YVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITR--RSLGYAYVNFQQPADAERALDT 62
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++G R RI S +L + N+++KN++ +D
Sbjct: 63 MNFDPIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKKIDNK 104
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ FS G I S K+ + +G SKG+GFV F + AN +I +NG+L ++K +YV
Sbjct: 105 AMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGR 164
Query: 234 AQTKRERTSYL 244
+++ER L
Sbjct: 165 FISRKEREKEL 175
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 126/220 (57%), Gaps = 14/220 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + H +FS FG+I S+ ++ +GKS+G+GFV + + E A A++ L
Sbjct: 202 YVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDAL-- 259
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLY---VKNLDDDVTEEILDKNLYVKNINDDVDEI 173
G +L + +L GR Q A + K++ + E+ NLYVKN+ +D
Sbjct: 260 ---NGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDND 316
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G I S K+MR + G S+GFGFVCFS+P+EA +A+N LNG +F K LYVA+
Sbjct: 317 KLQELFSCSGKIVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAM 376
Query: 234 AQTKRERTSYLRIMYA---KQGPGLASTNF---PVHPTLY 267
AQ KR+R L+ ++ Q P L+ ++ P+ P Y
Sbjct: 377 AQCKRDRQLALQTYFSVPQSQPPYLSDSSVVPPPISPVYY 416
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ++ID+ L +FSKFG I S KVV + GKSKGYGFVQ+ +++SAL A L+
Sbjct: 110 YVKNLDASIDSAGLQSLFSKFGTILSCKVV-EEHGKSKGYGFVQFDSEDSALAARTALHD 168
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ +LY + +A+ +E+ NLYVKN++ D+ +
Sbjct: 169 TMLKEKKLYVSRFVKKSERTTAT------------SYDELKFTNLYVKNLSKDMTQDAFH 216
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS G I S IM+ + G S+GFGFV F +P++A +A++ LNG + L+V AQ
Sbjct: 217 NMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTLFVGRAQA 276
Query: 237 KRERTSYLRIMY 248
K ER L+ Y
Sbjct: 277 KAERKKILQHEY 288
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 20/192 (10%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVV-VSQDGKSKGYGFVQYSTQESALNA 110
P + +L + L +FS G I++ + S G+S YG+V + A A
Sbjct: 17 PRLSLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRPYDAYKA 76
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ L ++G + + + NLYVKNLD +
Sbjct: 77 LSNLNHTYLKGKLMRIMWCQRNPCARKSGIGNLYVKNLD------------------ASI 118
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D L+ FS+ G I S K++ + G SKG+GFV F + D A A L+ + +K LY
Sbjct: 119 DSAGLQSLFSKFGTILSCKVVEEH-GKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLY 177
Query: 231 VAIAQTKRERTS 242
V+ K ERT+
Sbjct: 178 VSRFVKKSERTT 189
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 119/203 (58%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGM 389
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEITGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 11/221 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + G SKG+GFV + E A A+E++
Sbjct: 194 YIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + L D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKKIYVG--RAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G +KGFGFVCFS+P+EA +A+ +NG + KPLY+A+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRNKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAP 277
K ER ++L Y ++ + + PV L YQ P
Sbjct: 371 KEERQAHLTNQYMQRMASIRAVPNPV--------LNPYQPP 403
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S KVV + G SKGYGFV + T+++A AI+K+
Sbjct: 102 FIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D++ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDLRLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A+ +NG + K +YV AQ
Sbjct: 209 RLFGKFGPSLSVKVMTDESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KGERQTELK 277
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + PT + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPTASLYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A+E + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALETMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F D A RAI+ +NG+L +
Sbjct: 106 LDKSIDNKALFDTFSAFGNILSCKVVCDEHG-SKGYGFVHFETRDAAERAIDKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 111/195 (56%), Gaps = 3/195 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IFS+FG S KV++ G+SKG+GFV + E A A+ +
Sbjct: 194 YIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +Y RA + E S + + + NLYVKN++D +D+ L+
Sbjct: 254 KEINGRMVYV--GRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQ 251
K ER + L Y ++
Sbjct: 371 KEERKAILTNQYMQR 385
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G S+G+GFV + TQE+A AI+ +
Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R + A F + N+Y+KN DD+D+ L+
Sbjct: 161 MLLNDRKVFVGHFKS-RKEREAEFG-----------ARAMEFTNVYIKNFGDDMDDNRLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M + G SKGFGFV F +EA +A+ +NG + + +YV AQ
Sbjct: 209 EIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER S L+
Sbjct: 269 RLERQSELK 277
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 36/195 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + L++ FS G I S +V V S+ +S GY ++ + A A++
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASR--RSLGYAYINFQQPADAERALDT 71
Query: 114 LYAATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
+ ++G + P LR + N+++KNLDD + +K LY
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLR------KSGVGNVFIKNLDDSID----NKALY----- 116
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
FS G I S K++ G S+G GFV F + A RAI T+NG+L + +
Sbjct: 117 ---------DTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDR 166
Query: 228 PLYVAIAQTKRERTS 242
++V ++++ER +
Sbjct: 167 KVFVGHFKSRKEREA 181
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R + R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------VRIMWSQRDPGL 93
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEINGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 139/284 (48%), Gaps = 30/284 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + +L+++F KFG I S+ V + GK +G+GFV Y ESA A++ L+
Sbjct: 357 YIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHD 416
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+G LY + R + A + + + T + NLYVKN++D+ D+ +L+
Sbjct: 417 KDYKGNVLYVARAQK-RTERDAELKKAHEQQ-KYETTLKYQGVNLYVKNLDDEYDDEKLQ 474
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F+ G I+S K+M+ +G SKGFGFVCFS+PDEA +A+ +NG + KPLYV++AQ
Sbjct: 475 NEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQR 534
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQA--PGFRHGGMIPNGFSSPPP 294
K R L +++ R+ Q+ A PG +G PP
Sbjct: 535 KEVRKQQLEAQMSQRS--------------QMRSQQIAAAGIPGAPYGA---------PP 571
Query: 295 SPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQ 338
+P++ G AAA G N M A P R GQ
Sbjct: 572 NPMYF---GGAAAYPPHGGRGMMYPPNGMPAGMPPRPRYAPPGQ 612
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 102/200 (51%), Gaps = 22/200 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN LH F+ FGDI S KV + G SKGYGFV Y T ESA AI+
Sbjct: 264 FIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIK---- 319
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLD-----DDVTEEILDKNLYVKNINDDVD 171
V GM+L + F ++V D D+V + NLY+KN+ +
Sbjct: 320 -GVNGMQL----------NDKVVFVGIHVPRRDRQAKIDEVRSQFT--NLYIKNLPTETT 366
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
EL + F + G I+S + G +GFGFV + N + A++A++ L+ + LYV
Sbjct: 367 TEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYV 426
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A AQ + ER + L+ + +Q
Sbjct: 427 ARAQKRTERDAELKKAHEQQ 446
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 37 SALIASIDVHSAMATPTFIP----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG- 91
+++ +SI + A+P P + L T+ L++IFS G + S + V +D
Sbjct: 152 TSVPSSIATTTPNASPASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVAS--IRVCRDAV 209
Query: 92 --KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLD 149
+S GY +V Y A A+E+L + ++ +A RI S
Sbjct: 210 TRRSLGYAYVNYLNAADAERALEQLNYSLIKN--------KACRIMWSQR---------- 251
Query: 150 DDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNP 209
D + N+++KN+++ +D L F+ G I S K+ G SKG+GFV +
Sbjct: 252 DPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTG 311
Query: 210 DEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
+ A AI +NG+ + K ++V I +R+R + +
Sbjct: 312 ESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKI 346
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEINGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 185 YIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEM-- 242
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 243 ---NGKEMSGKAIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 298
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 299 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 357
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 358 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILSQFQPAAGGYFVPA------VPQAQG 409
Query: 291 SPP 293
PP
Sbjct: 410 RPP 412
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 93 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 151
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 152 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDDNLK 199
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 200 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQK 259
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 260 KVERQAELKRKFEQ 273
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N + KP+ + +Q
Sbjct: 61 DTMNFDVIKGKPIRIMWSQ 79
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEINGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 140 bits (354), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 93/289 (32%), Positives = 145/289 (50%), Gaps = 45/289 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + E A A+E++
Sbjct: 194 YIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KDINGKMVFV-----GRAQKKVE-RQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL----------------------ASTNFPVHPTLY--Q 268
+AQ K ER ++L Y ++ G+ A PT Y
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRPTYYAPN 426
Query: 269 RALQVYQAPGFRHGGMIPNGF---------SSPPPSPLFLTRAGQAAAN 308
+ Q+ P ++ GG P GF S P P+ L AG A A+
Sbjct: 427 QMAQMRPNPRWQQGGR-PQGFQGMPNAMRQSGPRPALRHLAPAGTAPAS 474
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M G SKGFGFV F ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEINGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDENLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 111/192 (57%), Gaps = 8/192 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + + + +L ++ ++FG++ S+ V+ + G SKG+GF+ + E A +E L
Sbjct: 204 FVKNLPAELGDDELSKMATEFGEVTSAVVMKDEKGSSKGFGFINFKDAECAAKCVEALND 263
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
+ G LYA GR Q+ + + +++ E L NLYVKN+ D+VD+
Sbjct: 264 KEIGGKVLYA-----GRAQKKTEREAMLRQKVEESKQERYLKYQGMNLYVKNLADEVDDD 318
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ F+ CG I+S K+M+ G SKGFGFVCF++ DEA RA+ +NG + KPLYVA+
Sbjct: 319 ALRDLFTSCGTITSCKVMKDTSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVAL 378
Query: 234 AQTKRERTSYLR 245
AQ K R + L
Sbjct: 379 AQRKDVRRAQLE 390
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 94/191 (49%), Gaps = 20/191 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID LH FS FG I S KV +G SKGYGFV + Q +A AI+ +
Sbjct: 115 FIKNLDKSIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQ 174
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+EG +Y RA R Q + N++VKNL + + DD E
Sbjct: 175 KEIEGKIVYVGPFQKRADRPQGKDVYTNVFVKNLPAE--------------LGDD----E 216
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + ++ G ++S +M+ +G SKGFGF+ F + + A + + LN K LY A
Sbjct: 217 LSKMATEFGEVTSAVVMKDEKGSSKGFGFINFKDAECAAKCVEALNDKEIGGKVLYAGRA 276
Query: 235 QTKRERTSYLR 245
Q K ER + LR
Sbjct: 277 QKKTEREAMLR 287
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 26/190 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQ---ESALNA 110
+ +L + +L ++FS G + S + V +D +S GY +V Y++ ++A A
Sbjct: 24 YVGDLEKDVTEAQLFELFSSVGPVAS--IRVCRDAVTRRSLGYAYVNYNSALDPQAAERA 81
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+E L + G + RI S D + N+++KN++ +
Sbjct: 82 METLNYHVLNGKPM--------RIMWSHR----------DPSARKSGVGNIFIKNLDKSI 123
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D L FS G I S K+ G+SKG+GFV F + A+RAI T+N K +Y
Sbjct: 124 DAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVY 183
Query: 231 VAIAQTKRER 240
V Q + +R
Sbjct: 184 VGPFQKRADR 193
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFS---NP 209
+ + +LYV ++ DV E +L + FS G ++S+++ R T R + G+ +V ++ +P
Sbjct: 18 LTNSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSL--GYAYVNYNSALDP 75
Query: 210 DEANRAINTLNGILFHQKPLYV 231
A RA+ TLN + + KP+ +
Sbjct: 76 QAAERAMETLNYHVLNGKPMRI 97
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 119/203 (58%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F K+G S KV+ GKS+G+GFV Y E A A+E++
Sbjct: 195 YIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEM-- 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G EL ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 253 ---NGTELNGKTVFVGRAQKKME-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 308
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 309 EKLRKEFSPFGSITSAKVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 367
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 368 LAQRKEERKAHLTNQYMQRIAGM 390
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 106/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 103 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKM-- 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + + N+Y+KN DD+D+ L
Sbjct: 160 ---NGMLLNDRKVFVGRFKSR--------KEREAEMGAKAKEFTNVYIKNFGDDMDDQRL 208
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F + G SVK+M G S+GFGFV + ++AN+A+ +NG + K ++V AQ
Sbjct: 209 KELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQ 268
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 269 KKMERQAELK 278
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 70
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 71 DTMNFDVVKGKP---------------IRIMWSQRDPSL 94
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 121/217 (55%), Gaps = 19/217 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A A+ ++
Sbjct: 194 YIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G +Y GR Q+ + +K + + +E +++ NLYVKN++D +D+
Sbjct: 254 KEVNGRMIYV-----GRAQKRIERQS-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 DRLRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 233 IAQTKRERTSYLR--------IMYAKQGPGLASTNFP 261
+AQ K ER + L M A GP L S P
Sbjct: 367 LAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQP 403
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 107/190 (56%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+GYGFV + T E+A AI+ +
Sbjct: 102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
+ +++ ++ R +E + ++++ N+Y+KN +D+D+ L
Sbjct: 161 MLLNDRKVFVGHFKSRREREL-------------EYGAKVMEFTNVYIKNFGEDMDDKRL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G SVK+M + G S+GFGFV + N +EA +A++ +NG + + +YV AQ
Sbjct: 208 REIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER S L+
Sbjct: 268 KRIERQSELK 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 32/188 (17%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L++ FS G I S +V +S Y ++ + A A++ +
Sbjct: 17 DLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEV 76
Query: 119 VEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
++G + P LR + N+++KNLD E I +K LY
Sbjct: 77 IKGRPIRIMWSQRDPGLR------KSGVGNVFIKNLD----ESIDNKALY---------- 116
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
FS G I S K++ G S+G+GFV F + ANRAI T+NG+L + + ++V
Sbjct: 117 ----DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVG 171
Query: 233 IAQTKRER 240
+++RER
Sbjct: 172 HFKSRRER 179
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LY+ +++ DV E L + FS G I S+++ R T R +S + ++ F P +A RA+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLS--YAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 138/254 (54%), Gaps = 29/254 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ T+ + +L ++F K+G I S+ V+ DGKS+ +GFV + ++A A+++L
Sbjct: 217 YVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNG 276
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
ELY GR Q+ + + KN+ + V E+ + NLY+KN+ +++D+
Sbjct: 277 KIFNDKELYV-----GRAQKKSEREMELKEKFEKNVQE-VAEKFQNTNLYLKNLEENIDD 330
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F++ G I+S K+MR + G+S+G GFV F + ++ANRA+ +NG + KPLYVA
Sbjct: 331 EKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVA 390
Query: 233 IAQTKRERTSYLRIMYAKQGP-GLASTNFPVHPTLYQRALQVYQA--------------- 276
+AQ K +R + L+ +++ P +A + P P V Q
Sbjct: 391 LAQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQQ 450
Query: 277 ---PGFRHGGMIPN 287
PG R GG +PN
Sbjct: 451 PLMPGMRPGGPMPN 464
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 109/195 (55%), Gaps = 16/195 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ F FG+I S K+ G+S+GYGFVQ+ ESA +AI+KL
Sbjct: 126 FIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKL-- 183
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLD-DDVTEEILDKNLYVKNINDDVDEIEL 175
GM I + F +V+ D ++V+ I N+YVKN++D V + EL
Sbjct: 184 ---NGM----------LINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDEL 230
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F + G I+S +MR + G S+ FGFV F N D A +A+ LNG +F+ K LYV AQ
Sbjct: 231 KEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQ 290
Query: 236 TKRERTSYLRIMYAK 250
K ER L+ + K
Sbjct: 291 KKSEREMELKEKFEK 305
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG-KSKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ + +L +FS+ G + S +V + KS GY +V Y+ Q A A+E L
Sbjct: 38 YVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELLN 97
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + RI S D + + N+++KN++ +D L
Sbjct: 98 FTPINGKPI--------RIMYSNR----------DPSSRKSGTGNIFIKNLDKSIDNKAL 139
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F G I S KI G S+G+GFV F + A AI+ LNG+L + K ++V
Sbjct: 140 YDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFV 199
Query: 236 TKRER 240
K++R
Sbjct: 200 RKQDR 204
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + E A A+E++
Sbjct: 200 YIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNG 259
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 260 KDINGKMVFV-----GRAQKKVE-RQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDD 313
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 314 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 372
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 373 LAQRKEERKAHLTNQYMQRIAGM 395
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 107/192 (55%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 108 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 166
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 167 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDERLK 214
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M G SKGFGFV F ++AN+A+ +NG + K ++V AQ
Sbjct: 215 ELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQK 274
Query: 237 KRERTSYLRIMY 248
K ER + L+ +
Sbjct: 275 KVERQAELKRRF 286
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 121/217 (55%), Gaps = 19/217 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A A+ ++
Sbjct: 194 YIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G +Y GR Q+ + +K + + +E +++ NLYVKN++D +D+
Sbjct: 254 KEVNGRMIYV-----GRAQKRIERQS-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 DRLRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 233 IAQTKRERTSYLR--------IMYAKQGPGLASTNFP 261
+AQ K ER + L M A GP L S P
Sbjct: 367 LAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQP 403
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 107/190 (56%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+GYGFV + T E+A AI+ +
Sbjct: 102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
+ +++ ++ R +E + ++++ N+Y+KN +D+D+ L
Sbjct: 161 MLLNDRKVFVGHFKSRREREL-------------EYGAKVMEFTNVYIKNFGEDMDDKRL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G SVK+M + G S+GFGFV + N +EA +A++ +NG + + +YV AQ
Sbjct: 208 REIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER S L+
Sbjct: 268 KRIERQSELK 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 32/188 (17%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L++ FS G I S +V +S Y ++ + A A++ +
Sbjct: 17 DLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEV 76
Query: 119 VEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
++G + P LR + N+++KNLD E I +K LY
Sbjct: 77 IKGRPIRIMWSQRDPGLR------KSGVGNVFIKNLD----ESIDNKALY---------- 116
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
FS G I S K++ G S+G+GFV F + ANRAI T+NG+L + + ++V
Sbjct: 117 ----DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVG 171
Query: 233 IAQTKRER 240
+++RER
Sbjct: 172 HFKSRRER 179
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LY+ +++ DV E L + FS G I S+++ R T R +S + ++ F P +A RA+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLS--YAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 115/196 (58%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDGIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 WKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGQFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKRTFEQ 282
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 25/212 (11%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKG---YGFVQYSTQESAL 108
PT + +L + L++ FS G I S + V +D ++G Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRVCRDLITRGSSNYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A+ + ++G L RI S +L + + N++VKN++
Sbjct: 67 HALHTMNFDVIKGKPL--------RIMWSQRDPSLRKRGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G I S K++ G SKG+GFV F + A RAI +NG+L + +
Sbjct: 109 SINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRK 167
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
++V ++++ER + L AK+ P + NF
Sbjct: 168 VFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 115/196 (58%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDGIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 WKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGQFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKRTFEQ 282
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 25/212 (11%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKG---YGFVQYSTQESAL 108
PT + +L + L++ FS G I S + V +D ++G Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRVCRDLITRGSSNYAYVNFQHPKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A+ + ++G L RI S +L + + N++VKN++
Sbjct: 67 HALHTMNFDVIKGKPL--------RIMWSQRDPSLRKRGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G I S K++ G SKG+GFV F + A RAI +NG+L + +
Sbjct: 109 SINNKALYDTVSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRK 167
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
++V ++++ER + L AK+ P + NF
Sbjct: 168 VFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYVG--RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 140 bits (353), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 132/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F K+G S KV+ GKSKG+GFV + E A A+E++
Sbjct: 181 YIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNG 240
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 241 KDINGKMVFV-----GRAQKKVE-RQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDD 294
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 295 EKLRKEFSPFGSITSAKVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 353
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P S
Sbjct: 354 LAQRKEERKAHLTNQYMQRIAGMRA--LPANAILNQFQPAAGGYFMPA------VPQAQS 405
Query: 291 SPP 293
PP
Sbjct: 406 RPP 408
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 89 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 147
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 148 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDERLK 195
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F +EAN+A+ +NG + K ++V AQ
Sbjct: 196 ELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQK 255
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 256 KVERQAELK 264
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 127/252 (50%), Gaps = 34/252 (13%)
Query: 57 FTVNL-ASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY 115
+T NL S K+ ++FS +G+I S V V ++ KG+ FV ++ E A A+E+L
Sbjct: 262 YTKNLIPSMCTEEKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEELN 321
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
EG LY GR Q+ A ++ ++ EIL K NLYV+N+ DD+D
Sbjct: 322 GRDFEGKSLYV-----GRAQKKAE-REAELRRKAENKRAEILKKYQGVNLYVRNLPDDMD 375
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E L++ FS G ++S ++MR ++G+S+GFGFVCFS P+EA +A+ +NG + +KPLYV
Sbjct: 376 EEGLRKEFSNFGTLTSCRVMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGKMMGKKPLYV 435
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSS 291
+AQ K R + L G G R G +P
Sbjct: 436 CLAQRKEIRQAQLEAQRIAAAAG-----------------------GLRIPGAVPGSLYP 472
Query: 292 PPPSPLFLTRAG 303
P +P+F + G
Sbjct: 473 QPGAPMFYPQPG 484
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 100/218 (45%), Gaps = 30/218 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L FS FG+I S KV +G S GYGFV + E A AI K+
Sbjct: 171 FIKNLDKAIDNKTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNG 230
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y ++ + +E++ F N+Y KNL I E
Sbjct: 231 MLLNDKQVYVGYFKSRQEREASEETHIFTNVYTKNL-----------------IPSMCTE 273
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
++++ FS G I+SV + + KGF FV F+ P+ A +A+ LNG F K LYV
Sbjct: 274 EKIRELFSLYGEITSVYVPVDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVG 333
Query: 233 IAQTKRERTSYLR---------IMYAKQGPGLASTNFP 261
AQ K ER + LR I+ QG L N P
Sbjct: 334 RAQKKAEREAELRRKAENKRAEILKKYQGVNLYVRNLP 371
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 22/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L ++ L ++FS G + S +V +V++ +S GY +V + + + A A+E
Sbjct: 80 YVGDLHPEVNEANLFEVFSAIGPVASVRVCRDIVTR--RSLGYAYVNFHSMDDAERALET 137
Query: 114 LYAATVEGMELYA-PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
M YA P R ++ L KN D + + N+++KN++ +D
Sbjct: 138 --------MNFYACPQTRDKPMR-------LMWKNRDPTIRKSGAG-NVFIKNLDKAIDN 181
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L FS G I S K+ + G S G+GFV F NP++A AIN +NG+L + K +YV
Sbjct: 182 KTLFDTFSVFGNILSCKVATDDEGNSLGYGFVHFENPEDAETAINKVNGMLLNDKQVYVG 241
Query: 233 IAQTKRER 240
++++ER
Sbjct: 242 YFKSRQER 249
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 120/217 (55%), Gaps = 19/217 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ N +K + + ++ L + NLYVKN++D +D+
Sbjct: 254 KEVRGRLLYV-----GRAQKRVERQN-ELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRREFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQ--------GPGLASTNFP 261
+AQ K ER + L Y ++ GP L S P
Sbjct: 367 LAQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQP 403
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDNHG-SRGFGFVHFETHEAAQQAIVTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + ++ N+YVKN++ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARAMEFT--------NIYVKNLHVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR + G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEVIRGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ N G S+GFGFV F + A +AI T+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDNHG-SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGPILSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEVIRGQP---------------IRIMWSQRDPGL 93
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYVG--RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 11/213 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IFS+FG S KV++ G+SKG+GFV + E A A+ +
Sbjct: 194 YIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +Y RA + E S + + + NLYVKN++D +D+ L+
Sbjct: 254 KEINGRMVYVG--RAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQ--------GPGLASTNFP 261
K ER + L Y ++ GP L S P
Sbjct: 371 KEERKAILTNQYMQRLATMRALPGPFLGSFQPP 403
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G S+G+GFV + TQE+A AIE +
Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIETMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R + A F + N+Y+KN DD+D+ L+
Sbjct: 161 MLLNDRKVFVGHFKS-RKEREAEFG-----------ARAMEFTNVYIKNFGDDMDDNRLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M N G SKGFGFV F +EA +A+ +NG + + +YV AQ
Sbjct: 209 EIFSRFGKTLSVKVMMDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER S L+
Sbjct: 269 RLERQSELK 277
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 36/195 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + L++ FS G I S +V V S+ +S GY ++ + A A++
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASR--RSLGYAYINFQQPADAERALDT 71
Query: 114 LYAATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
+ ++G + P LR + N+++KNLD
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLR------KSGVGNVFIKNLD------------------ 107
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
D +D L FS G I S K++ G S+G GFV F + A RAI T+NG+L + +
Sbjct: 108 DSIDNKALYDTFSAFGNILSCKVVCDENG-SRGHGFVHFETQEAATRAIETMNGMLLNDR 166
Query: 228 PLYVAIAQTKRERTS 242
++V ++++ER +
Sbjct: 167 KVFVGHFKSRKEREA 181
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R + R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------VRIMWSQRDPGL 93
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 117/204 (57%), Gaps = 30/204 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NLA++IDN LH +F K+G+I SSK+ S+DGKSKG+G++Q+ ++ESA AI+K+
Sbjct: 106 FVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNG 165
Query: 117 ATVEGMELYAPSLRAGRIQES--------ASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+TV ++Y I++S A F NLYVKNLD VTE+
Sbjct: 166 STVRDKQIYVGKF----IRKSERSLPDLDAKFTNLYVKNLDPVVTEK------------- 208
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
L + FS G I S+ I + G SKGFGFV + +PD+A RA+ ++G F K
Sbjct: 209 -----HLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKI 263
Query: 229 LYVAIAQTKRERTSYLRIMYAKQG 252
LYVA AQ K ER L ++ ++G
Sbjct: 264 LYVARAQKKVEREQILHHLFVEKG 287
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 8/168 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + L + FS FG I S + ++G+SKG+GFV Y + + A A+E +
Sbjct: 197 YVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDG 256
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYV-KNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ LY + +++ ++L+V K L + N+YVKNI+ V + EL
Sbjct: 257 SQFGSKILYVARAQK-KVEREQILHHLFVEKGLKH------MGSNIYVKNIDTSVGDEEL 309
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
+ +FS CG + S K+MR ++G SKGFGFVCFS EA ++++ NG L
Sbjct: 310 RDHFSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGEL 357
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 25/196 (12%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESAL 108
A+P + +L S + + +L++ FS+F + S++V S GKS YG+V S+ + A+
Sbjct: 11 ASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAI 70
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNN--LYVKNLDDDVTEEILDK-NLYVKN 165
AIE ++ +S N + V L D K N++VKN
Sbjct: 71 RAIE---------------------LKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKN 109
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
+ +D + L F + G I S KI R+ G SKGFG++ F + + AN AI +NG
Sbjct: 110 LAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVR 169
Query: 226 QKPLYVAIAQTKRERT 241
K +YV K ER+
Sbjct: 170 DKQIYVGKFIRKSERS 185
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 118/203 (58%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + E A A+E +
Sbjct: 194 YIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KDINGKMVFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGM 389
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M G SKGFGFV F ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSKYGKTLSVKVMTDPSGKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 111/195 (56%), Gaps = 3/195 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L +F KFG S KV+ + GKSKG+GFV + E A A++ +
Sbjct: 162 YIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDVMNG 221
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 222 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 279
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 280 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 338
Query: 237 KRERTSYLRIMYAKQ 251
K ER ++L +Y ++
Sbjct: 339 KEERQAHLTNLYMQR 353
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 13/166 (7%)
Query: 80 IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESAS 139
++ S VV ++G KGYGFV + TQE+A AIEK+ + +++ ++ + +E+
Sbjct: 93 LRKSGVVCDENG-PKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFKSRKEREA-- 149
Query: 140 FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK 199
L E N+Y+KN +D+D+ LK F + G SVK+M G SK
Sbjct: 150 -------ELGARAKEFT---NVYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTDESGKSK 199
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
GFGFV F ++A +A++ +NG + K +YV AQ K ER + L+
Sbjct: 200 GFGFVSFERHEDAQKAVDVMNGKELNGKQIYVGRAQKKVERQTELK 245
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 265 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 323
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A NLY++ +
Sbjct: 324 RIVATKPLYV-ALAQRKEERQAHLTNLYMQRM 354
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ V E L + FS G I S+++ R T+R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPYVTEAMLFEKFSPAGPILSIRVCRDMITHRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------VRIMWSQRDPSL 93
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 124/216 (57%), Gaps = 13/216 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEINGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQ 268
+AQ K ER ++L Y ++ G+ + P + L Q
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQ 400
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 158/349 (45%), Gaps = 82/349 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ ++ ++F +G I S + +GKSKG+GFV + + E+A+ A+E+L
Sbjct: 234 YVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELND 293
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-------NLYVKNINDD 169
+ G +LY GR Q+ ++ L L+K NL+VKN++D
Sbjct: 294 KDINGQKLYV-----GRAQKKRE----RIEELKRQYEAARLEKLSKYQGVNLFVKNLDDS 344
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D ++L++ F G I+S ++M G SKGFGFVCFS+P+EA +AI +N +FH KPL
Sbjct: 345 IDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPL 404
Query: 230 YVAIAQTKRERTSYL----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF 279
YVA+AQ K R S L R+ A G+ P P Y Q PGF
Sbjct: 405 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIP--PMFYG------QQPGF 456
Query: 280 RHGGMIPNGFSSPP---PSPLFLTRAGQ------------------------------AA 306
PNG S P P+P + GQ AA
Sbjct: 457 ----FPPNGRGSAPFPGPNPQMMVPRGQIPPPQGQWPRAGPNGQPVPVYGIPPVYGDFAA 512
Query: 307 AN----------NLTNGNQRAAAN-NSMLAVASPDERKDILGQGLYPLV 344
AN N N R + ++LA A D++K ILG+ LYP +
Sbjct: 513 ANGGRQQRGYYPNRQNQKGRPQKDLAALLASAPVDQQKRILGEELYPKI 561
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 99/198 (50%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV + G SK +GFV Y T E+A AIE +
Sbjct: 141 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENVNG 200
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ E+Y + + +ES A+F N+YVKN+D +EE
Sbjct: 201 MLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEE--------------- 245
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E+++ F G I+S+ + + G SKGFGFV F + + A +A+ LN + + LY
Sbjct: 246 ---EMRKLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLY 302
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ KRER L+ Y
Sbjct: 303 VGRAQKKRERIEELKRQY 320
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G Q S + V +D KS GY +V + E AIE+
Sbjct: 53 YVGELNPSVNEALLFEIFSPVG--QVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIEE 110
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G R RI S +L + N+++KN++ +D
Sbjct: 111 LNYSLIDG--------RPCRIMWSQRDPSLRRNG----------EGNIFIKNLHPAIDNK 152
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ +G SK FGFV + + A AI +NG+L + + +YV
Sbjct: 153 ALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVYVGK 212
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 213 HVSKKDRESKFEEMKA 228
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 26/122 (21%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDEANRAI 216
+LYV +N V+E L + FS G +SS+++ R ++K G+ +V F ++ +AI
Sbjct: 51 SLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRD--AVTKKSLGYAYVNFHKLEDGEKAI 108
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFP------VHPTLYQRA 270
LN L +P RIM++++ P L +HP + +A
Sbjct: 109 EELNYSLIDGRP---------------CRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKA 153
Query: 271 LQ 272
L
Sbjct: 154 LH 155
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + I + +L ++ ++ G+I S+ V+ G SKG+GF+ + ESA +E L
Sbjct: 204 FVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNE 263
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
+ G LYA GR Q+ + + ++ E L NLYVKN++D+VD+
Sbjct: 264 REMSGKTLYA-----GRAQKKTEREAMLRQKAEESKQERYLKYQGMNLYVKNLSDEVDDD 318
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ F+ G I+S K+M+ G SKGFGFVCF++ DEA RA+ +NG + KPLYVA+
Sbjct: 319 ALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVAL 378
Query: 234 AQTKRERTSYLRI-MYAKQGPGLASTNFPVHPTLYQRAL--QVYQAPGFRHGGMI 285
AQ K R + L M A+ G G S P +P A Q P H M+
Sbjct: 379 AQRKDVRRAQLEANMQARMGMGAMSR--PPNPMAVTSACAHQAASKPASPHPAML 431
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 96/191 (50%), Gaps = 22/191 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID LH FS FG I S KV +G SKGYGFV + Q +A AI+ +
Sbjct: 117 FIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQ 176
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+EG +Y RA R Q+ + N++VKNL D I DD E
Sbjct: 177 KEIEGKIVYVGPFQKRADRPQD--VYTNVFVKNLPAD--------------IGDD----E 216
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + ++ G I+S +M+ ++G SKGFGF+ F + + A + + LN K LY A
Sbjct: 217 LGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRA 276
Query: 235 QTKRERTSYLR 245
Q K ER + LR
Sbjct: 277 QKKTEREAMLR 287
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 26/190 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQ---ESALNA 110
+ +L + +L ++FS G + S + V +D +S GY +V Y++ ++A A
Sbjct: 26 YVGDLEKDVTEAQLFELFSSVGPVAS--IRVCRDAVTRRSLGYAYVNYNSALDPQAADRA 83
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+E L V G + RI S D + N+++KN++ +
Sbjct: 84 METLNYHVVNGKPM--------RIMWSHR----------DPSARKSGVGNIFIKNLDKTI 125
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D L FS G I S K+ G+SKG+GFV F + A+RAI T+N K +Y
Sbjct: 126 DAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVY 185
Query: 231 VAIAQTKRER 240
V Q + +R
Sbjct: 186 VGPFQKRADR 195
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFS---NP 209
+ + +LYV ++ DV E +L + FS G ++S+++ R T R + G+ +V ++ +P
Sbjct: 20 LANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSL--GYAYVNYNSALDP 77
Query: 210 DEANRAINTLNGILFHQKPLYV 231
A+RA+ TLN + + KP+ +
Sbjct: 78 QAADRAMETLNYHVVNGKPMRI 99
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 110/189 (58%), Gaps = 3/189 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + KL +FS+FG+I+S V + +GKSKG+GFV + + A A+ ++
Sbjct: 183 YVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMHG 242
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G LYA RA R +E K + +++ + NLYVKN++D++D+ L
Sbjct: 243 KEINGRALYA--SRAQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERL 300
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ FS G I+S K+M G SKGFGFVCF+ P++A RA+ +N L KPLYVA+AQ
Sbjct: 301 KEAFSHYGPITSAKVMTDANGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQ 360
Query: 236 TKRERTSYL 244
K +R + L
Sbjct: 361 RKEDRRAKL 369
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID +L+ FS G I S K+ + + G SKGYGFV + +E A AIEK+
Sbjct: 92 FIKNLDKTIDQKQLYDTFSFIGKILSCKIAMDEHGNSKGYGFVHFEKEECAERAIEKING 151
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +Y ++SAS FNN+YVKN D T+E
Sbjct: 152 MMINDRVVYVGKFIPSSDRKSASGKLRFNNIYVKNFPPDTTDE----------------- 194
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L+ FS+ G I S + + G SKGFGFVCF +PD A +A+ ++G + + LY +
Sbjct: 195 -KLRDMFSEFGEIKSCCVEKNPEGKSKGFGFVCFHDPDHAEQAVRVMHGKEINGRALYAS 253
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER L+ KQ
Sbjct: 254 RAQRKEERQEELKQRLEKQ 272
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 19/164 (11%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L+ FS+ G + S+++ + S GYG+V + + A A+E L + G
Sbjct: 17 LYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALENLNYESFMG------- 69
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
R RI S D + N+++KN++ +D+ +L FS G I S
Sbjct: 70 -RPIRIMWSQR----------DPSLRKSGKGNIFIKNLDKTIDQKQLYDTFSFIGKILSC 118
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
KI G SKG+GFV F + A RAI +NG++ + + +YV
Sbjct: 119 KIAMDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVG 162
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 18/98 (18%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEANRAIN 217
+LYV +++ E L FS+ G + S +I R R S G+G+V F P +A RA+
Sbjct: 2 SLYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRN-SLGYGYVNFEEPKDAERALE 60
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
LN F +P +RIM++++ P L
Sbjct: 61 NLNYESFMGRP---------------IRIMWSQRDPSL 83
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 119/394 (30%), Positives = 179/394 (45%), Gaps = 101/394 (25%)
Query: 50 ATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESAL 108
+P F V NL+ T + L ++F +G I S+ V+ +GKS+ +GFV + +SA
Sbjct: 209 GSPKFTNVYVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAA 268
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFN-NLYVKNLDDDVT--EEILDKNLYVKN 165
A+E+L T+ + L GR Q A L K + ++ E++ NLY+KN
Sbjct: 269 AAVERLNGTTINNDRV----LYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKN 324
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++D + +LK FS+ G I+S K+M + G SKG GFV FS P+EA++A+N +NG L
Sbjct: 325 LDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIG 384
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAK--------------------------------QG- 252
+KPLYVA+AQ K ER ++L+ +A+ QG
Sbjct: 385 RKPLYVAVAQRKEERKAHLQAQFAQIRAPGGMAPLPAGIPLYHPGAPRLAPQQLYYGQGT 444
Query: 253 ------------------PGL---ASTNFPVHPTLYQRALQVYQAPGFRHGG-------- 283
PG+ + NF + P QR Q+ Q G R G
Sbjct: 445 PGFMPPQPAGFSFQQQILPGMRPGVAPNF-IMPYHLQRQGQLGQRTGVRRNGNFQQVQQN 503
Query: 284 ------------MIPNGFSSPPPS-----------PLFLTRAGQAAANNLTNGNQRAAAN 320
+PNG + PS P+ +G AA N NQR A
Sbjct: 504 QMLHRNSNQGFRYMPNGRNGMDPSLVPHGLMGPMMPMPFDGSGVTAA---PNDNQRPGAL 560
Query: 321 N----SMLAVASPDERKDILGQGLYPLVKKLKVN 350
+ S LA A+P+ ++ +LG+ LYPLV++L N
Sbjct: 561 STTLASALASATPENQRMMLGEHLYPLVERLAPN 594
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 103/194 (53%), Gaps = 23/194 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN LH F+ FG + S KV + G+SKGYGFVQ+ +E+A NAI++L
Sbjct: 126 FIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNG 185
Query: 117 ATVEGMELYAPSL--RAGRIQESAS--FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y R R Q + S F N+YVKNL + T+E
Sbjct: 186 MLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDE----------------- 228
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYV 231
+LK+ F G I+S +M+ G S+ FGFV F NPD A A+ LNG + + LYV
Sbjct: 229 -DLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYV 287
Query: 232 AIAQTKRERTSYLR 245
AQ K ER + L+
Sbjct: 288 GRAQRKAEREAELK 301
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 33/209 (15%)
Query: 47 SAMATPTFIP--------------FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK 92
+A ATP P + +L ++ +L+ +FS+ I S +V Q +
Sbjct: 14 AAAATPVIAPGVALGGGPFANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKR 73
Query: 93 SK-GYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDD 151
S GY +V ++ + A NA+E L + G + RI S D
Sbjct: 74 SSLGYAYVNFANAQDASNAMELLNFTPLNGKPI--------RIMFSQR----------DP 115
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDE 211
+ N+++KN++ +D L F+ G + S K+ + G SKG+GFV F N +
Sbjct: 116 SIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEA 175
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRER 240
A AI LNG+L + K +YV + ++ER
Sbjct: 176 AQNAIKRLNGMLINDKQVYVGLFIRRQER 204
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 109/198 (55%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ LH FS FG+I S KV V G+SKGYGFVQY+ +ESA AIEKL
Sbjct: 127 FIKNLDESIDHKALHDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 186
Query: 117 ATVEGMELY-APSLRAGRIQESAS---FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR +A+ F N+YVKNL + T++
Sbjct: 187 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDD----------------- 229
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F + G I+S +M+ G SKGFGFV F N D+A RA+ +LNG F K YV
Sbjct: 230 -DLKNAFGEYGKITSAVVMKDGDGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVG 288
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER + LR+ Y +
Sbjct: 289 RAQKKSERETELRVRYEQ 306
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L FS+ G + S +V +S GYG+V ++ + A AI++L
Sbjct: 39 YVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQELN 98
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ LY +R +Y D N+++KN+++ +D L
Sbjct: 99 Y-----IPLYGKPIRV-----------MYSHR--DPSVRRSGAGNIFIKNLDESIDHKAL 140
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV ++N + A +AI LNG+L + K +YV
Sbjct: 141 HDTFSVFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFL 200
Query: 236 TKRERTS 242
++ER S
Sbjct: 201 RRQERDS 207
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V + +L FSQ G + SV++ R T R + G+G+V F+NP +A RAI
Sbjct: 37 SLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSL--GYGYVNFTNPQDAARAI 94
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
LN I + KP +R+MY+ + P +
Sbjct: 95 QELNYIPLYGKP---------------IRVMYSHRDPSV 118
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 139/284 (48%), Gaps = 30/284 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + +L+++F KFG I S+ V + GK +G+GFV Y ESA A++ L+
Sbjct: 268 YIKNLPTETTTEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHD 327
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+G LY + R + A + + + T + NLYVKN++D+ D+ +L+
Sbjct: 328 KDYKGNVLYVARAQK-RTERDAELKKAH-EQQKYETTLKYQGVNLYVKNLDDEYDDEKLQ 385
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F+ G I+S K+M+ +G SKGFGFVCFS+PDEA +A+ +NG + KPLYV++AQ
Sbjct: 386 NEFTPFGTITSCKVMKDEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQR 445
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQA--PGFRHGGMIPNGFSSPPP 294
K R L +++ R+ Q+ A PG +G PP
Sbjct: 446 KEVRKQQLEAQMSQRS--------------QMRSQQIAAAGIPGAPYGA---------PP 482
Query: 295 SPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQ 338
+P++ G AAA G N M A P R GQ
Sbjct: 483 NPMYF---GGAAAYPPHGGRGMMYPPNGMPAGMPPRPRYAPPGQ 523
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 102/200 (51%), Gaps = 22/200 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN LH F+ FGDI S KV + G SKGYGFV Y T ESA AI+
Sbjct: 175 FIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTGESAEAAIK---- 230
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLD-----DDVTEEILDKNLYVKNINDDVD 171
V GM+L + F ++V D D+V + NLY+KN+ +
Sbjct: 231 -GVNGMQL----------NDKVVFVGIHVPRRDRQAKIDEVRSQFT--NLYIKNLPTETT 277
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
EL + F + G I+S + G +GFGFV + N + A++A++ L+ + LYV
Sbjct: 278 TEELNEVFGKFGPITSAAVQSDEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYV 337
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A AQ + ER + L+ + +Q
Sbjct: 338 ARAQKRTERDAELKKAHEQQ 357
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 37 SALIASIDVHSAMATPTFIP----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG- 91
+++ +SI + A+P P + L T+ L++IFS G + S + V +D
Sbjct: 63 TSVPSSIATTTPNASPASQPNTSLYVGELDPTVTEAMLYEIFSMIGPVAS--IRVCRDAV 120
Query: 92 --KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLD 149
+S GY +V Y A A+E+L + ++ +A RI S
Sbjct: 121 TRRSLGYAYVNYLNAADAERALEQLNYSLIKN--------KACRIMWSQR---------- 162
Query: 150 DDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNP 209
D + N+++KN+++ +D L F+ G I S K+ G SKG+GFV +
Sbjct: 163 DPSLRKTGQGNIFIKNLDETIDNKALHDTFAAFGDILSCKVATDEHGASKGYGFVHYVTG 222
Query: 210 DEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
+ A AI +NG+ + K ++V I +R+R + +
Sbjct: 223 ESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKI 257
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 123/216 (56%), Gaps = 14/216 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L +IFS++G+I S+ V+V DGKS+ +GF+ + + + A+ A+E+L
Sbjct: 219 FVKNLSESTTKEDLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELNG 278
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
+ E Y GR Q+ + + + D ++ +NLY+KN++D + +
Sbjct: 279 KKINDKEWYC-----GRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGISDD 333
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G I+S K+MR G+SKG GFV FS +EA++AI +NG + KPLYVA
Sbjct: 334 QLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLYVAF 393
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQR 269
AQ K ER + L+ +++ P P+ P++ R
Sbjct: 394 AQRKEERKAMLQAQFSQMRP------VPITPSMTPR 423
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 98/193 (50%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN LH FS FG I S KV G+SKG+GFVQY +E A +A++ L
Sbjct: 128 FIKNLDKTIDNKTLHDTFSAFGAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKSLNG 187
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +Y P LR S A FNN++VKNL + T+E
Sbjct: 188 MLINDKPVYVGPFLRKQERDNSFDKARFNNVFVKNLSESTTKE----------------- 230
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS+ G I+S +M G S+ FGF+ F +PD+A RA+ LNG + K Y
Sbjct: 231 -DLVKIFSEYGNITSAVVMVGTDGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYCG 289
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 290 RAQKKSEREMDLK 302
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 25/202 (12%)
Query: 43 IDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQY 101
+ V A PT + +L +++ + +L+++FS+ G + S +V + + S GY +V +
Sbjct: 26 VSVGVAQPLPTTSLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNF 85
Query: 102 STQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNL---DDDVTEEILD 158
S A A+E L + P NN ++ + D +
Sbjct: 86 SNPMDAARALEMLN---------FVP------------LNNKPIRVMYSNRDPSSRRSGS 124
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
N+++KN++ +D L FS G I S K+ + G SKGFGFV + + A A+ +
Sbjct: 125 ANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVATDDMGQSKGFGFVQYEKEEFAQSAMKS 184
Query: 219 LNGILFHQKPLYVAIAQTKRER 240
LNG+L + KP+YV K+ER
Sbjct: 185 LNGMLINDKPVYVGPFLRKQER 206
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 119/201 (59%), Gaps = 10/201 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + L IF ++G+I S+ ++ DGKSK +GFV + ++A A+E L
Sbjct: 218 YVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNG 277
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++ E Y G+ Q+ S L +K+ + +E +DK NLY+KN++D + +
Sbjct: 278 KKIDDKEWYV-----GKAQKK-SERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISD 331
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ FS G+I+S K+MR GIS+G GFV FS P+EA+RA+ +NG + KPLYVA
Sbjct: 332 ENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVA 391
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K ER + L+ +++ P
Sbjct: 392 LAQRKEERRARLQAQFSQMRP 412
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 103/197 (52%), Gaps = 21/197 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID+ LH FS FG+I S KV G+S+GYGFVQ+ +E+A NAI+KL
Sbjct: 128 FIKNLDKTIDHKALHDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNG 187
Query: 117 ATVEGMELYAPSLRAGRIQESAS---FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++Y ++SAS FNN+YVKNL + TEE
Sbjct: 188 MLLNDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEE------------------ 229
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK F + G I+S IMR G SK FGFV F N D A +A+ +LNG K YV
Sbjct: 230 DLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGK 289
Query: 234 AQTKRERTSYLRIMYAK 250
AQ K ER L+ + +
Sbjct: 290 AQKKSERELELKSQFEQ 306
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L+ +F++ G + S +V +S GYG+V Y++ + A A++ L
Sbjct: 40 YVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDILN 99
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNL---DDDVTEEILDKNLYVKNINDDVDE 172
+ P FNN ++ + D + N+++KN++ +D
Sbjct: 100 ---------FTP------------FNNKPIRIMYSHRDPSIRKSGTGNIFIKNLDKTIDH 138
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L FS G I S K+ + G S+G+GFV F N + A AI+ LNG+L + K +YV
Sbjct: 139 KALHDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVG 198
Query: 233 IAQTKRERTS 242
K ER S
Sbjct: 199 HFLRKHERDS 208
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V + +L F+Q G + SV++ R T R + G+G+V +++P +A RA+
Sbjct: 38 SLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSL--GYGYVNYTSPQDAARAL 95
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+ LN F+ KP +RIMY+ + P +
Sbjct: 96 DILNFTPFNNKP---------------IRIMYSHRDPSI 119
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 115/199 (57%), Gaps = 10/199 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + ++F KFG+I S+ + ++GKS+G+GFV + + E A A+E L+
Sbjct: 231 YVKNLDPELGQEGFEELFGKFGNITSAALSKDEEGKSRGFGFVNFESHEQAAAAVETLHD 290
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G +LY R Q+ + + K+ ++ +E L K NLY+KN+ DD+D+
Sbjct: 291 TEINGRKLYV-----ARAQKKSEREDELRKSYEN-AKQEKLSKYQGVNLYIKNLEDDIDD 344
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L+ F G I+S K+MR + SKGFGFVCFS+PDEA +A++ +N + KPLYV+
Sbjct: 345 EKLRAEFEPFGTITSCKVMRDEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVS 404
Query: 233 IAQTKRERTSYLRIMYAKQ 251
+AQ + R L A++
Sbjct: 405 LAQRREVRRQQLETQIAQR 423
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++F+ G + S + V +D +S GY +V Y A+++
Sbjct: 50 YVGELDPSVTEAMLFEVFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADGERALDQ 107
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++ RA RI S D + N+++KN+++ +D
Sbjct: 108 LNYSLIKN--------RACRIMWSQR----------DPALRKTGQGNIFIKNLDEQIDNK 149
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G + S K+ G SKG+GFV + + A AI ++NG+L + K ++V
Sbjct: 150 ALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGH 209
Query: 234 AQTKRERTSYLRIMYAK 250
++ER S + M A+
Sbjct: 210 HIPRKERQSKIDEMKAQ 226
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 131/243 (53%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L +FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEIGGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 DLFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 126/243 (51%), Gaps = 20/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ +D L +F FG++ S KV+ G S+G+GFV + E A A++ +
Sbjct: 194 YVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNN---LYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
V G +LY GR Q+ A N + L D NLYVKN++D + +
Sbjct: 254 KEVSGQQLYV-----GRAQKRAERQNELKRRFEQLKQDRQTRYRGVNLYVKNLDDSISDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ FS G+I+S K+M T SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRTVFSPYGVITSAKVM-TEGDHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPP 293
AQ K ER + L Y K+ + + + PV L +Q P + +P G P
Sbjct: 368 AQRKEERKAILTNQYMKRLSTVQALSRPV--------LGSFQQP---NSYFLPTGAQPPA 416
Query: 294 PSP 296
+P
Sbjct: 417 QAP 419
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 105/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETNEAAQQAIGTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
+ +++ ++ R +E+ ++ + L+ N+YVKN++ D+DE L
Sbjct: 161 MLLNDRKVFVGHFKSQREREA-------------ELGAQALEFTNIYVKNLSVDMDEQGL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F G + SVK+MR N G S+GFGFV F +EA +A++ +NG + LYV AQ
Sbjct: 208 QDLFFAFGNMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER + L+
Sbjct: 268 KRAERQNELK 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
++G + P LR + N+++KNL+ D
Sbjct: 74 FEVIKGQPIRIMWSQRDPGLR------KSGVGNVFIKNLE------------------DS 109
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D L FS G I S K+ G S+GFGFV F + A +AI T+NG+L + + +
Sbjct: 110 IDSKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKV 168
Query: 230 YVAIAQTKRERTSYL 244
+V +++RER + L
Sbjct: 169 FVGHFKSQREREAEL 183
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGQP---------------IRIMWSQRDPGL 93
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 112/195 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D KL ++FSK+G+I S+ V+ GK KG+GFV + ++A+ A++ L
Sbjct: 239 FIKNFGDHLDEKKLTEMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNE 298
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+T+EG +L RA + E + + L + + NLYVKNI +++ + L+
Sbjct: 299 STLEGTDLKLSVCRAQKKSERTAELKRKYEALKQERVQRYQGVNLYVKNIEEEMTDDGLR 358
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
++F+ G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA+AQ
Sbjct: 359 EHFANFGSITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQR 418
Query: 237 KRERTSYLRIMYAKQ 251
K +R + L Y ++
Sbjct: 419 KEDRRAQLASQYMQR 433
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 107/194 (55%), Gaps = 14/194 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV ++G SKGYGFV + T+ SAL AIEK
Sbjct: 146 FIKNLDRVIDNKSIYDTFSLFGNILSCKVATDEEGNSKGYGFVHFETEASALTAIEK--- 202
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ Q A +K L + + N+++KN D +DE +L
Sbjct: 203 --VNGMLLSDKKVFVGKFQPRAQ----RMKELGESGLKYT---NVFIKNFGDHLDEKKLT 253
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI--A 234
+ FS+ G I+S +M N G KGFGFV F +PD A +A++TLN L +++ A
Sbjct: 254 EMFSKYGEITSAVVMTDNSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCRA 313
Query: 235 QTKRERTSYLRIMY 248
Q K ERT+ L+ Y
Sbjct: 314 QKKSERTAELKRKY 327
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 19/186 (10%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L + FS G + S +V + S GY +V + A A++ +
Sbjct: 61 DLHPDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEV 120
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+ G R RI S D + N+++KN++ +D +
Sbjct: 121 IHG--------RPMRIMWSQR----------DPAARRAGNGNIFIKNLDRVIDNKSIYDT 162
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
FS G I S K+ G SKG+GFV F A AI +NG+L K ++V Q +
Sbjct: 163 FSLFGNILSCKVATDEEGNSKGYGFVHFETEASALTAIEKVNGMLLSDKKVFVGKFQPRA 222
Query: 239 ERTSYL 244
+R L
Sbjct: 223 QRMKEL 228
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 19/98 (19%)
Query: 139 SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-I 197
S +LY+ +L DVTE +L + FS G + S+++ R N +
Sbjct: 53 SMASLYIGDLHPDVTESMLFEK------------------FSMAGPVLSIRVCRDNTSRL 94
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
S G+ +V F P +A RA++T+N + H +P+ + +Q
Sbjct: 95 SLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQ 132
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 9/187 (4%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
KL ++F +FG+I S+KV++ ++GKSKG+GFV + E+A +A++ L + +LY
Sbjct: 9 KLREMFLEFGEITSAKVMIDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYV-- 66
Query: 129 LRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGI 184
GR Q+ + + K + + NLYVKN++D +D+ LKQ F G
Sbjct: 67 ---GRAQKKNERLDELRSHFEKQRAERSSRYTQGVNLYVKNLDDSIDDTRLKQEFVVFGN 123
Query: 185 ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
I+S K+M + SKGFGFVCFSNP+EA +A+ +NG + KPLYVA+AQ K +R ++L
Sbjct: 124 ITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHL 183
Query: 245 RIMYAKQ 251
Y ++
Sbjct: 184 ASQYMQR 190
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +ID+ +L Q F FG+I S+KV+ + +SKG+GFV +S E A A+ ++
Sbjct: 101 YVKNLDDSIDDTRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNG 160
Query: 117 ATVEGMELY 125
LY
Sbjct: 161 KICGSKPLY 169
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 115/205 (56%), Gaps = 6/205 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F K+G S KV+ +GKSKG+GFV + E A A++ +
Sbjct: 194 YIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KDMNGKAIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFP 261
K ER ++L Y ++ +AS P
Sbjct: 371 KEERQAHLTNQYMQR---MASVRVP 392
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AI+K+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M + G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 EMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI+ +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +++ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGINDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGAALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 111/203 (54%), Gaps = 9/203 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ +DGKSKG+GFV + T E+A A++ L
Sbjct: 186 YVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ EG LY +A R QE F L K D NLYVKN++D +D+
Sbjct: 246 KDMGEGKSLYVARAQKKAERQQELKRKFEELKKKRHDS-----AFGVNLYVKNLDDSIDD 300
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L + FS G I+S K+M G SKGFGFVCF + +EA A+ LNG + KPLYVA
Sbjct: 301 ERLCKEFSPYGTITSAKVMTDEEGRSKGFGFVCFISANEATCAVTELNGRVVGSKPLYVA 360
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y + G+
Sbjct: 361 LAQRKEERKAHLASQYMRHMTGM 383
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN ++ FS FG+I S KV + SKGYGFV + T+E+A +I+K+
Sbjct: 93 FIKNLDKTIDNKAIYDTFSAFGNILSCKVATDEKANSKGYGFVHFETEEAANTSIDKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFTEDFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK++F G I+S K+M G SKGFGFV F + A A+ LNG + K LYVA
Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ + SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDEKANSKGYGFVHFETEEAANTSIDKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D++E L FS G + S+++ R + R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLLRNKP---------------IRIMWSQRDPSL 84
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 110/192 (57%), Gaps = 3/192 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL +IFSKFG+ S +V+ + G +G+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDEKLKEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ RA + E + + D T NLYVKN++D +D+ L+
Sbjct: 254 KELNGRIMFVG--RAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMY 248
K ER ++L Y
Sbjct: 371 KEERQAHLITQY 382
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G S+GYGFV + T ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHDAAERAIEKM-- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + N+Y+KN +D+D+ +L
Sbjct: 159 ---NGMLLNDRKVFVGRFKSR--------KEREAELGARAREFTNVYIKNFGEDMDDEKL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ FS+ G +SV++M G +GFGFV F N ++A +A++ +NG + + ++V AQ
Sbjct: 208 KEIFSKFGNATSVRVMTDESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQ 267
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 268 KKMERQMELK 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L + N+++KN++ +D L
Sbjct: 74 FDVIKGQPV--------RIMWSQRDPSLRKSGVG----------NIFIKNLDKSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+G+GFV F D A RAI +NG+L + + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 236 TKRERTSYL 244
+++ER + L
Sbjct: 175 SRKEREAEL 183
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ P L
Sbjct: 70 DTMNFDVIKGQP---------------VRIMWSQRDPSL 93
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 129/259 (49%), Gaps = 35/259 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ I + ++F KFG++ S + V ++GKS+G+GFV Y E A A+E+L+
Sbjct: 250 YVKNIDPEISEAEFEELFKKFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELHD 309
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-------NLYVKNINDD 169
+ +LY RA + E + L + LDK NL+VKN++DD
Sbjct: 310 TEYKDRKLYV--CRAQKKHERE-------EELRKQYEQAKLDKLNKYNGINLFVKNLDDD 360
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ L+Q FS G I+S KIM + G SKGFGFVCFS+PDEA +AI +N + KPL
Sbjct: 361 IDDERLRQEFSIYGTITSAKIMVDDNGKSKGFGFVCFSSPDEATKAITEMNQRMVSGKPL 420
Query: 230 YVAIAQTKRERTS----------YLRIMYAKQGPGLAST-NFPVHPTLYQRALQVYQAP- 277
YVA+AQ K R S LRI G++ P P Y Q P
Sbjct: 421 YVALAQRKDVRRSQLESQINARNQLRIQQQAAAAGMSPQYGMPGAPMFYG------QGPT 474
Query: 278 GFRHGG-MIPNGFSSPPPS 295
GF G M G P P+
Sbjct: 475 GFMPAGPMTDRGMPFPQPA 493
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 100/194 (51%), Gaps = 22/194 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN LH F+ FG I S KV V + G SKGYGFV Y T ESA AI+ +Y
Sbjct: 167 FIKNLDASIDNKALHDTFTAFGSILSCKVAVDELGNSKGYGFVHYKTSESAEAAIKHVYV 226
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ + F+++ +K N+YVKNI+ ++ E E +
Sbjct: 227 GH-----------HVSKKDRQSKFDDMKLKFT-----------NVYVKNIDPEISEAEFE 264
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G ++S+ + G S+GFGFV + N ++A RA+ L+ + + LYV AQ
Sbjct: 265 ELFKKFGNVTSLSLSVDENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQK 324
Query: 237 KRERTSYLRIMYAK 250
K ER LR Y +
Sbjct: 325 KHEREEELRKQYEQ 338
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 116/196 (59%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S +++ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDGIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AI+K+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SV++M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVELMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKRTFEQ 282
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAYLTNEYMQRM 386
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 25/212 (11%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS G I S + + +D S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRICRDLITSGSSNYAYVNFQHTKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A++ + ++G + RI S +L + N++VKN++
Sbjct: 67 HALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G I S ++ G SKG+GFV F + A RAI +NG+L + +
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRK 167
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
++V ++++ER + L AK+ P + NF
Sbjct: 168 VFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 109/200 (54%), Gaps = 3/200 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ +DGKSKG+GFV + T E+A A++ L
Sbjct: 186 YVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ EG LY RA + E + L E + NLYVKN++D +D+ L
Sbjct: 246 KDMGEGKSLYVA--RAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I+S K+M G SKGFGFVCF+ EA A+ LNG + KPLYVA+AQ
Sbjct: 304 RIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQ 363
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K ER ++L Y + G+
Sbjct: 364 RKEERKAHLASQYMRHMTGM 383
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 93 FIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFTEDFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK++F G I+S K+M G SKGFGFV F + A A+ LNG + K LYVA
Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ DV+E L FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLVRNKP---------------IRIMWSQRDPSL 84
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 176/387 (45%), Gaps = 101/387 (26%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ T + L ++F +G I S+ V+ +GKS+ +GFV + +SA A+E+L
Sbjct: 217 YVKNLSETYTDEDLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNG 276
Query: 117 ATVEGMELYAPSLRAGRIQESASFN-NLYVKNLDDDVT--EEILDKNLYVKNINDDVDEI 173
T+ + L GR Q A L K + ++ E++ NLY+KN++D +
Sbjct: 277 TTINNDRV----LYVGRAQRKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDSFSDE 332
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK FS+ G I+S K+M + G SKG GFV FS P+EA++A+N +NG L +KPLYVA+
Sbjct: 333 KLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAV 392
Query: 234 AQTKRERTSYLRIMYAK--------------------------------QG--------- 252
AQ K ER ++L+ +A+ QG
Sbjct: 393 AQRKEERKAHLQAQFAQIRAPGGMAPLPAGIPLYHPGAPRLAPQQLYYGQGTPGFMPPQP 452
Query: 253 ----------PGL---ASTNFPVHPTLYQRALQVYQAPGFRHGG---------------- 283
PG+ + NF + P QR Q+ Q G R G
Sbjct: 453 AGFSFQQQILPGMRPGVAPNF-IMPYHLQRQGQLGQRTGVRRNGNFQQVQQNQQMLHRNS 511
Query: 284 -----MIPNGFSSPPPS-----------PLFLTRAGQAAANNLTNGNQRAAANN----SM 323
+PNG + PS P+ +G AA N NQR A + S
Sbjct: 512 NQGFRYMPNGRNGMDPSLVPHGLMGPMMPMPFDGSGVTAA---PNDNQRPGALSTTLASA 568
Query: 324 LAVASPDERKDILGQGLYPLVKKLKVN 350
LA A+P+ ++ +LG+ LYPLV++L N
Sbjct: 569 LASATPENQRMMLGEHLYPLVERLAPN 595
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 103/194 (53%), Gaps = 23/194 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN LH F+ FG + S KV + G+SKGYGFVQ+ +E+A NAI++L
Sbjct: 126 FIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEAAQNAIKRLNG 185
Query: 117 ATVEGMELYAPSL--RAGRIQESAS--FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y R R Q + S F N+YVKNL + T+E
Sbjct: 186 MLINDKQVYVGLFIRRQEREQTNGSPKFTNVYVKNLSETYTDE----------------- 228
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF-HQKPLYV 231
+LK+ F G I+S +M+ G S+ FGFV F NPD A A+ LNG + + LYV
Sbjct: 229 -DLKKLFGPYGTITSATVMKDVNGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYV 287
Query: 232 AIAQTKRERTSYLR 245
AQ K ER + L+
Sbjct: 288 GRAQRKAEREAELK 301
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 33/209 (15%)
Query: 47 SAMATPTFIP--------------FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK 92
+A ATP P + +L ++ +L+ +FS+ I S +V Q +
Sbjct: 14 AAAATPVIAPGVALGGGPFANASLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKR 73
Query: 93 SK-GYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDD 151
S GY +V ++ + A NA+E L + G + RI S D
Sbjct: 74 SSLGYAYVNFANAQDASNAMELLNFTPLNGKPI--------RIMFSQR----------DP 115
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDE 211
+ N+++KN++ +D L F+ G + S K+ + G SKG+GFV F N +
Sbjct: 116 SIRKSGHGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVALDSSGQSKGYGFVQFDNEEA 175
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRER 240
A AI LNG+L + K +YV + ++ER
Sbjct: 176 AQNAIKRLNGMLINDKQVYVGLFIRRQER 204
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 108/188 (57%), Gaps = 3/188 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 123 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 182
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 183 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 240
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KP YVA+AQ
Sbjct: 241 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQR 299
Query: 237 KRERTSYL 244
K ER ++L
Sbjct: 300 KEERQAHL 307
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 31 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 89
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 90 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 137
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 138 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 197
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 198 KVERQTELK 206
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 29 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAEL 112
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 226 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 284
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V Y +L + + A N +++ +
Sbjct: 285 RIVATKPFYV-ALAQRKEERQAHLTNQHMQRM 315
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 121/236 (51%), Gaps = 14/236 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ +DGKSKG+GFV + T E+A A++ L
Sbjct: 186 YVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ EG LY RA + E + L E + NLYVKN++D +D+ L
Sbjct: 246 KDMGEGKSLYVA--RAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I+S K+M G SKGFGFVCF+ EA A+ LNG + KPLYVA+AQ
Sbjct: 304 RIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQ 363
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSS 291
K ER ++L Y + G+ Q+ Q++Q P GG + F S
Sbjct: 364 RKEERKAHLASQYMRHMTGMR----------MQQLGQIFQ-PNTASGGFLVPTFQS 408
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 93 FIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFTEDFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK++F G I+S K+M G SKGFGFV F + A A+ LNG + K LYVA
Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ DV+E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLLRNKP---------------IRIMWSQRDPSL 84
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 129/249 (51%), Gaps = 26/249 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D KL +F+K+G+ S +V+ GKS+G+GFV + E A A++++
Sbjct: 194 YIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +Y + +++ A + + D +T NLYVKN++D +D+ L+
Sbjct: 254 KEMNGKPIYVGRAQK-KVERQAELKRKFEQMKQDRMTR-YQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMLEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSP 296
K ER ++L Y ++ +AS +P + N + PPS
Sbjct: 371 KEERQAHLTNQYMQR---MASVRAVPNPVI--------------------NPYQPAPPSG 407
Query: 297 LFLTRAGQA 305
F+T QA
Sbjct: 408 YFMTAIPQA 416
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM-- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + N+Y+KN DD+DE +L
Sbjct: 159 ---NGMLLNDRKVFVGRFKSR--------KEREAELGARAREFTNVYIKNFGDDMDEEKL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F++ G S+++M + G S+GFGFV F ++A +A++ +NG + KP+YV AQ
Sbjct: 208 RDVFNKYGNAMSIRVMTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQ 267
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 268 KKVERQAELK 277
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAASYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G R RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKG--------RPVRIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 127/212 (59%), Gaps = 10/212 (4%)
Query: 51 TPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALN 109
TP F V NL I +L + F KFG I S+ V+ Q G S+ +GFV + E+A +
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNI 166
A+EK+ G+ L L GR Q+ + + + + E+ NLY+KN+
Sbjct: 285 AVEKM-----NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
+D VD+ +LK+ FS+ G ++S K+M +G+S+GFGFV +SNP+EA RA++ +NG + +
Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGLSRGFGFVAYSNPEEALRALSEMNGKMIGK 399
Query: 227 KPLYVAIAQTKRERTSYLRIMYAK-QGPGLAS 257
KPLY+A+AQ K +R ++L+ ++++ + PG S
Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIRAPGPMS 431
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 103/195 (52%), Gaps = 12/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L + FS FG I S KV + G+SKGYGFVQ+ +ESA AI+KL
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ R QE A D+ T N+YVKN+ ++ E EL+
Sbjct: 199 MLMNDKQVFVGHFI--RRQERAR----------DENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G+ISS +MR G S+ FGFV F + A A+ +NGI LYV AQ
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 237 KRERTSYLRIMYAKQ 251
K ER LR + ++
Sbjct: 307 KSEREEELRRKFEQE 321
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-Y 115
+ +L + L +F ++ S +V Q+ +S GY ++ +S A A+E L Y
Sbjct: 52 YAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNY 111
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIE 174
E R RI S + D + + K N+++KN++ +D
Sbjct: 112 TPLFE---------RPIRIMLS-----------NRDPSTRLSGKGNIFIKNLDASIDNKA 151
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K ++V
Sbjct: 152 LFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHF 211
Query: 235 QTKRER 240
++ER
Sbjct: 212 IRRQER 217
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+ +LY +++ V E L F + SV++ R S G+ ++ FSNP++A RA+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAME 107
Query: 218 TLNGILFHQKPLYVAIA 234
LN ++P+ + ++
Sbjct: 108 ALNYTPLFERPIRIMLS 124
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 163/364 (44%), Gaps = 84/364 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ T + L IF K+G I S+ V+ G SK +GFV + + +SA A+E L
Sbjct: 221 YVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNG 280
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
AT +++ + + A + + + E+ NLY+KN++D V++ +L
Sbjct: 281 ATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKF-EKFKGXNLYLKNLDDSVNDEKLX 339
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G I+S K+M +G+SKG GFV F P+EA RA+N +NG + +KPLYVA+AQ
Sbjct: 340 ELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQR 399
Query: 237 KRERTSYLRIMYAK--------------------------------QG-PGLAST----- 258
K ER + L+ +A+ QG PGL T
Sbjct: 400 KEERKARLQAQFAQIRSPGAMTPLQSGVPGFHSGAPRLAPQQLYFGQGTPGLIPTQPAGY 459
Query: 259 ----------------NFPVHPTLYQRALQVYQAPGFRHGG------------------M 284
NF + P QR Q Q G R GG
Sbjct: 460 GFQQQLMPGMRPGVAPNF-IMPYQLQRQGQPGQRMGVRRGGNSQQMQHQQQPASWGPVMP 518
Query: 285 IPNGFSSPPPSPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLV 344
+P S P SP+ + R G + L S LA +PD ++ +LG+ L+PLV
Sbjct: 519 LPFDVSGMPVSPMDIQRTGPVPMSTLA----------SALASTTPDNQRLMLGEQLFPLV 568
Query: 345 KKLK 348
++++
Sbjct: 569 ERIE 572
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 104/202 (51%), Gaps = 27/202 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L F+ FG + S K+ + +G+SKGYGFVQ+ +E+A NAI++L
Sbjct: 130 FIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNG 189
Query: 117 ATVEGMELYAPSLRAGRIQE------SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R QE S F N+YVKNL + T++
Sbjct: 190 MLINDKQVYVGLFV--RHQERNXGNGSPKFTNVYVKNLSETTTDD--------------- 232
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH-QKPL 229
+LK F + G I+S +MR G+SK FGFV F + D A A+ LNG F+ K
Sbjct: 233 ---DLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVW 289
Query: 230 YVAIAQTKRERTSYLRIMYAKQ 251
YV AQ K ER + LR + ++
Sbjct: 290 YVGKAQRKSEREAELRAKFEQE 311
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 31/191 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L + I +L+ +F + + S +V Q + S GY +V +++ + A NA+E L
Sbjct: 42 YVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLN 101
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ G + PS+R + F N+++KNLD +
Sbjct: 102 FTPLNGKPIRIMFSHRDPSIR------KSGFANVFIKNLDPSI----------------- 138
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
D L F+ G + S KI N G SKG+GFV F + A AI LNG+L + K +
Sbjct: 139 -DNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQV 197
Query: 230 YVAIAQTKRER 240
YV + +ER
Sbjct: 198 YVGLFVRHQER 208
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 16/102 (15%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
+LYV +++ + E +L F Q + S+++ R R S G+ +V F++P +A A+
Sbjct: 40 SLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEH 99
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
LN + KP +RIM++ + P + + F
Sbjct: 100 LNFTPLNGKP---------------IRIMFSHRDPSIRKSGF 126
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 108/188 (57%), Gaps = 3/188 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 129 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 188
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 189 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 246
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KP YVA+AQ
Sbjct: 247 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQR 305
Query: 237 KRERTSYL 244
K ER ++L
Sbjct: 306 KEERQAHL 313
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 37 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 95
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 96 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 143
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 144 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 203
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 204 KVERQTELK 212
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 35 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 93
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 94 NGMLLNDRKVFVGRFKSRKEREAEL 118
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 232 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 290
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V Y +L + + A N +++ +
Sbjct: 291 RIVATKPFYV-ALAQRKEERQAHLTNQHMQRM 321
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 113/198 (57%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + Q+F FG I S+ + V +GKS+G+GFV + T E A A+E L+
Sbjct: 191 YVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALHD 250
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ V+G +L+ R Q+ A ++ + E++ NLY+KN+ DD+D+
Sbjct: 251 SDVKGRKLFV-----ARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDE 305
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ F G I+S K+MR +GISKGFGFVCFS+PDEA +A+ +N + KPLYV++
Sbjct: 306 RLRGEFEPFGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 365
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 366 AQRREVRRQQLESQIAQR 383
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 102/196 (52%), Gaps = 16/196 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG++ S KV + G+SKGYGFV Y T E+A AI+
Sbjct: 98 FIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIK---- 153
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK--NLYVKNINDDVDEIE 174
V GM L + G +++ K + EE+ ++ N+YVKN++ +V + E
Sbjct: 154 -AVNGMLLNDKKVYVG--------HHISRKERQSKI-EEMKNQFTNIYVKNVDPEVTQEE 203
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
Q F G I+S + + G S+GFGFV F +EA+ A+ L+ + L+VA A
Sbjct: 204 FVQLFEPFGRITSAVLQVDDEGKSRGFGFVNFDTHEEAHAAVEALHDSDVKGRKLFVARA 263
Query: 235 QTKRERTSYLRIMYAK 250
Q K ER LR Y +
Sbjct: 264 QKKAEREEELRRSYEQ 279
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 23/201 (11%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQES 106
A P+ + L T+ L +IF+ G + S + V +D +S GY +V Y
Sbjct: 3 AAPSASLYVGELDPTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAAD 60
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
A+E+L + ++G RA RI S D + N+++KN+
Sbjct: 61 GERALEQLNYSLIKG--------RACRIMWSQR----------DPALRKTGQGNIFIKNL 102
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
++ +D L F+ G + S K+ G SKG+GFV + + A AI +NG+L +
Sbjct: 103 DEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLND 162
Query: 227 KPLYVAIAQTKRERTSYLRIM 247
K +YV +++ER S + M
Sbjct: 163 KKVYVGHHISRKERQSKIEEM 183
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 137/253 (54%), Gaps = 20/253 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++F +FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAP-----GFRHGGMI 285
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P G R
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPAVPQVGGRPPYYT 424
Query: 286 PNGFSSPPPSPLF 298
PN + P+P +
Sbjct: 425 PNQLAQMRPNPRW 437
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F Q G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFIQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 22/223 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D+ +L +F +FG S KV+ + GKSKG+GFV + E A A+E++
Sbjct: 194 YIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESAS--------FNNLY-----VKNLDDDVTEEILDKNLYV 163
+ G ++Y GR Q+ F + ++ + D + NLYV
Sbjct: 254 KDLNGKQIYV-----GRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYV 308
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN++D +D+ L++ FS G I+S K+ G SKGFGFVCFS+P+EA +A+ +NG +
Sbjct: 309 KNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEMNGKI 367
Query: 224 FHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
KPLYVA+AQ K ER ++L Y ++ +AST+ +P +
Sbjct: 368 VATKPLYVALAQRKEERQAHLSNQYMQR---MASTSAGPNPVV 407
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ L+ FS FG+I S KVV ++G SKGYGFV + TQE A AIEK+
Sbjct: 102 FVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +++ L E N+Y+KN+ +D+D+ L+
Sbjct: 161 MFLNDHKVFVGRFKSRRDRQA---------ELGARAKEFT---NVYIKNLGEDMDDERLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A+ +NG + K +YV AQ
Sbjct: 209 DLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKHKFGQ 282
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V + +S GY V + E A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L + N++VKN++ +D L
Sbjct: 74 FDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFVKNLDRSIDSKTL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G SKG+GFV F +EA RAI +NG+ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFK 174
Query: 236 TKRERTSYL 244
++R+R + L
Sbjct: 175 SRRDRQAEL 183
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 127/212 (59%), Gaps = 10/212 (4%)
Query: 51 TPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALN 109
TP F V NL I +L + F KFG I S+ V+ Q G S+ +GFV + E+A +
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNI 166
A+EK+ G+ L L GR Q+ + + + + E+ NLY+KN+
Sbjct: 285 AVEKM-----NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
+D VD+ +LK+ FS+ G ++S K+M +G+S+GFGFV +SNP+EA RA++ +NG + +
Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGR 399
Query: 227 KPLYVAIAQTKRERTSYLRIMYAK-QGPGLAS 257
KPLY+A+AQ K +R ++L+ ++++ + PG S
Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIRAPGPMS 431
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 103/195 (52%), Gaps = 12/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L + FS FG I S KV + G+SKGYGFVQ+ +ESA AI+KL
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ R QE A D+ T N+YVKN+ ++ E EL+
Sbjct: 199 MLMNDKQVFVGHFI--RRQERAR----------DENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G+ISS +MR G S+ FGFV F + A A+ +NGI LYV AQ
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 237 KRERTSYLRIMYAKQ 251
K ER LR + ++
Sbjct: 307 KSEREEELRRKFEQE 321
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ +L + L +F ++ S +V Q+ +S GY ++ +S A A+E L
Sbjct: 52 YAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN- 110
Query: 117 ATVEGMELYAPSL-RAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIE 174
Y P R RI S + D + + K N+++KN++ +D
Sbjct: 111 --------YTPLFDRPIRIMLS-----------NRDPSTRLSGKGNIFIKNLDASIDNKA 151
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K ++V
Sbjct: 152 LFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHF 211
Query: 235 QTKRER 240
++ER
Sbjct: 212 IRRQER 217
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+ +LY +++ V E L F + SV++ R S G+ ++ FSNP++A RA+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAME 107
Query: 218 TLNGILFHQKPLYVAIA 234
LN +P+ + ++
Sbjct: 108 ALNYTPLFDRPIRIMLS 124
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 22/223 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D+ +L +F +FG S KV+ + GKSKG+GFV + E A A+E++
Sbjct: 194 YIKNLGEDMDDERLQDLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESAS--------FNNLY-----VKNLDDDVTEEILDKNLYV 163
+ G ++Y GR Q+ F + ++ + D + NLYV
Sbjct: 254 KDLNGKQIYV-----GRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYV 308
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN++D +D+ L++ FS G I+S K+ G SKGFGFVCFS+P+EA +A+ +NG +
Sbjct: 309 KNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEMNGKI 367
Query: 224 FHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
KPLYVA+AQ K ER ++L Y ++ +AST+ +P +
Sbjct: 368 VATKPLYVALAQRKEERQAHLSNQYMQR---MASTSAGPNPVV 407
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ L+ FS FG+I S KVV ++G SKGYGFV + TQE A AIEK+
Sbjct: 102 FVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +++ L E N+Y+KN+ +D+D+ L+
Sbjct: 161 MFLNDHKVFVGRFKSRRDRQA---------ELGARAKEFT---NVYIKNLGEDMDDERLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A+ +NG + K +YV AQ
Sbjct: 209 DLFGRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKHKFGQ 282
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V + +S GY V + E A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L + N++VKN++ +D L
Sbjct: 74 FDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFVKNLDRSIDSKTL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G SKG+GFV F +EA RAI +NG+ + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFK 174
Query: 236 TKRERTSYL 244
++R+R + L
Sbjct: 175 SRRDRQAEL 183
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 126/209 (60%), Gaps = 10/209 (4%)
Query: 51 TPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALN 109
TP F V NL I +L + F KFG I S+ V+ Q G S+ +GFV + E+A +
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNI 166
A+EK+ G+ L L GR Q+ + + + + E+ NLY+KN+
Sbjct: 285 AVEKM-----NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
+D VD+ +LK+ FS+ G ++S K+M +G+S+GFGFV +SNP+EA RA++ +NG + +
Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGR 399
Query: 227 KPLYVAIAQTKRERTSYLRIMYAK-QGPG 254
KPLY+A+AQ K +R ++L+ ++++ + PG
Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIRAPG 428
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 103/195 (52%), Gaps = 12/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L + FS FG I S KV + G+SKGYGFVQ+ +ESA AI+KL
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ R QE A D+ T N+YVKN+ ++ E EL+
Sbjct: 199 MLMNDKQVFVGHFI--RRQERAR----------DENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G+ISS +MR G S+ FGFV F + A A+ +NGI LYV AQ
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 237 KRERTSYLRIMYAKQ 251
K ER LR + ++
Sbjct: 307 KSEREEELRRKFEQE 321
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ +L + L +F ++ S +V Q+ +S GY ++ +S A A+E L
Sbjct: 52 YAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN- 110
Query: 117 ATVEGMELYAPSL-RAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIE 174
Y P R RI S + D + + K N+++KN++ +D
Sbjct: 111 --------YTPLFDRPIRIMLS-----------NRDPSTRLSGKGNIFIKNLDASIDNKA 151
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K ++V
Sbjct: 152 LFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHF 211
Query: 235 QTKRER 240
++ER
Sbjct: 212 IRRQER 217
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+ +LY +++ V E L F + SV++ R S G+ ++ FSNP++A RA+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAME 107
Query: 218 TLNGILFHQKPLYVAIA 234
LN +P+ + ++
Sbjct: 108 ALNYTPLFDRPIRIMLS 124
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 140/260 (53%), Gaps = 35/260 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ T+ + +L ++F K+G I S+ V+ DGKS+ +GFV + ++A A+++L
Sbjct: 217 YVKNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNG 276
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
ELY GR Q+ + + KN+ + V E+ + NLY+KN+ +++D+
Sbjct: 277 KIFNDKELYV-----GRAQKKSEREMELKEKFEKNVQE-VAEKFQNTNLYLKNLEENIDD 330
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F++ G I+S K+MR + G+S+G GFV F + ++ANRA+ +NG + KPLYVA
Sbjct: 331 EKLRELFAEYGNITSCKVMRDSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVA 390
Query: 233 IAQTKRERTSYLRIMYAKQGP-------GLASTNFPVH-PTLYQR--------------- 269
+AQ K +R + L+ +++ P G FP P + Q+
Sbjct: 391 LAQRKEDRKAKLQAQFSQMRPVAMAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQA 450
Query: 270 --ALQVYQAPGFRHGGMIPN 287
A Q PG R GG +PN
Sbjct: 451 GFAFQQPLMPGMRPGGPMPN 470
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 109/195 (55%), Gaps = 16/195 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ F FG+I S K+ G+S+GYGFVQ+ ESA +AI+KL
Sbjct: 126 FIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKL-- 183
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLD-DDVTEEILDKNLYVKNINDDVDEIEL 175
GM I + F +V+ D ++V+ I N+YVKN++D V + EL
Sbjct: 184 ---NGM----------LINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDEL 230
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F + G I+S +MR + G S+ FGFV F N D A +A+ LNG +F+ K LYV AQ
Sbjct: 231 KEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQ 290
Query: 236 TKRERTSYLRIMYAK 250
K ER L+ + K
Sbjct: 291 KKSEREMELKEKFEK 305
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG-KSKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ + +L +FS+ G + S +V + KS GY +V Y+ Q A A+E L
Sbjct: 38 YVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELLN 97
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + RI S D + + N+++KN++ +D L
Sbjct: 98 FTPINGKPI--------RIMYSNR----------DPSSRKSGTGNIFIKNLDKSIDNKAL 139
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F G I S KI G S+G+GFV F + A AI+ LNG+L + K ++V
Sbjct: 140 YDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFV 199
Query: 236 TKRER 240
K++R
Sbjct: 200 RKQDR 204
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 133/254 (52%), Gaps = 21/254 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG I S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ N +K + + ++ L + NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYV-----GRAQKRVERQN-ELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F+ G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFAPYGMITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQ--------GPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM 284
+AQ K ER + L Y ++ P L S P L Q+P + G
Sbjct: 367 LAQRKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFLPAVPQPPAQSPYYASGPP 426
Query: 285 I--PNGFSSPPPSP 296
+ P +++ PP P
Sbjct: 427 VQPPPRWTAQPPRP 440
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV G S+G+GFV + T E+A NAI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN++ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEF--------TNIYVKNLHVDVDERCLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G I SVK+MR + G S+GFGFV F ++A +A+ +NG + LYV AQ
Sbjct: 209 DLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 32/195 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
++G + P LR + N+++KNL+D + +K LY
Sbjct: 74 FEVIKGQPIRIMWSQRDPGLR------KSGVGNVFIKNLEDSID----NKALY------- 116
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
FS G I S K++ + G S+GFGFV F + A AI T+NG+L + + +
Sbjct: 117 -------DTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKV 168
Query: 230 YVAIAQTKRERTSYL 244
+V +++RER + L
Sbjct: 169 FVGHFKSRREREAEL 183
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGQP---------------IRIMWSQRDPGL 93
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 111/198 (56%), Gaps = 9/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L ++FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER + L Y ++
Sbjct: 368 AQRKEERKAILTNQYMQR 385
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 103/189 (54%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEFT--------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 ELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 22/223 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D+ +L +FS+FG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESAS--------FNNLY-----VKNLDDDVTEEILDKNLYV 163
+ G ++Y GR Q+ F + ++ + D + NLYV
Sbjct: 254 KDLNGKQIYV-----GRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYV 308
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN++D +D+ L++ FS G I+S K+ G SKGFGFVCFS+P+EA +A+ +NG +
Sbjct: 309 KNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRI 367
Query: 224 FHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
KPLYVA+AQ K ER ++L Y ++ +AST+ +P +
Sbjct: 368 VATKPLYVALAQRKEERQAHLSNQYMQR---MASTSAVPNPGI 407
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ L+ FS FG+I S KVV ++G SKGYGFV + TQE A AIEK+
Sbjct: 102 FVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +++ L E N+Y+KN+ +D+D+ L+
Sbjct: 161 MFLNDRKVFVGRFKSRRDRQA---------ELGARAKEFT---NVYIKNLGEDMDDERLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKHKFGQ 282
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L++ FS G I S +V + + S GY V + E A A++ +
Sbjct: 17 DLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDV 76
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
++G + RI S +L + N++VKN++ +D L
Sbjct: 77 IKGKPV--------RIMWSQRDPSLRKSGVG----------NIFVKNLDRSIDSKTLYDT 118
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
FS G I S K++ G SKG+GFV F +EA RAI +NG+ + + ++V +++R
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRR 177
Query: 239 ERTSYL 244
+R + L
Sbjct: 178 DRQAEL 183
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 115/198 (58%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +++ + ++F K+G++ S+ V V ++G SKG+GFV Y E A +A++ L+
Sbjct: 228 YIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVDEEGNSKGFGFVNYEHHEEAQSAVDALHD 287
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ G +L+ R Q+ A ++ + E++ NLY+KN+ DDVD+
Sbjct: 288 TDIRGKKLFV-----SRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYIKNLEDDVDDE 342
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G I+S K+MR ++ SKGFGFVCFS+PDEA +A+ +N + KPLYV++
Sbjct: 343 KLRAEFEPFGTITSCKVMRDDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSL 402
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 403 AQRREVRRQQLESQIAQR 420
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L T+ L +IF+ G + S + V +D +S GY +V Y A+E+
Sbjct: 47 YVGELDPTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNTSDGERALEQ 104
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++ RA RI S D + N+++KN+++ +D
Sbjct: 105 LNYSLIKN--------RACRIMWSQR----------DPALRKTGQGNIFIKNLDEQIDNK 146
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G + S K+ G SKG+GFV + + A AI +NG+L + K +YV
Sbjct: 147 ALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGY 206
Query: 234 AQTKRERTSYLRIMYAK 250
+++ER S L M A+
Sbjct: 207 HISRKERQSKLDEMKAQ 223
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 7/228 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N I + + +F + G I S V+ GKS+G+GFV Y T E+A A+E L
Sbjct: 203 YVKNFRDDISDDEFRDLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNE 262
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +Y RA + E ++ + ++ + NLYVKN++D +D+ +L+
Sbjct: 263 KEFDLRRMYVA--RAQKKSERSALLRRQYEQKKQEMMKRFQGVNLYVKNLDDVIDDAKLR 320
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
Q F+ G I+S K+M +GIS+GFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 321 QEFANFGTITSAKVMSDEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQR 380
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM 284
K +R + L Y ++ L P P + Q++Q G+ GM
Sbjct: 381 KEDRKAQLAAQYVQRMSTLRIPQ-PGQPGVN----QMFQQGGYYMPGM 423
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 106/195 (54%), Gaps = 12/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S K+ + ++G SKGY FV + TQE+A AIEK+
Sbjct: 110 FIKNLEKDIDNKAIYDTFSAFGNILSCKIALDENGNSKGYAFVHFETQEAANRAIEKVNG 169
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ + R + NL K NLYVKN DD+ + E +
Sbjct: 170 MLLSGKKVFVGHFMS-RKERMEKIGNLAAKYT-----------NLYVKNFRDDISDDEFR 217
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F QCG I S +MR + G S+GFGFV + + A +A+ TLN F + +YVA AQ
Sbjct: 218 DLFEQCGKIVSCVVMRDDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYVARAQK 277
Query: 237 KRERTSYLRIMYAKQ 251
K ER++ LR Y ++
Sbjct: 278 KSERSALLRRQYEQK 292
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ +LA ++ +L++ F+ G I S + V +D +S GY +V + A A++
Sbjct: 22 YVGDLAPDVNEAQLYEKFNSTGPI--SSIRVCRDAITRRSLGYAYVNFQQPNDAERALDT 79
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L V G + RI S +L + N+++KN+ D+D
Sbjct: 80 LNFDPVNG--------KPCRIMWSQRDPSLRRSGVG----------NIFIKNLEKDIDNK 121
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ FS G I S KI G SKG+ FV F + ANRAI +NG+L K ++V
Sbjct: 122 AIYDTFSAFGNILSCKIALDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGH 181
Query: 234 AQTKRERTSYLRIMYAK 250
+++ER + + AK
Sbjct: 182 FMSRKERMEKIGNLAAK 198
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 20/98 (20%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
LYV ++ DV+E +L + F+ G ISS+++ R T R + G+ +V F P++A RA++
Sbjct: 21 LYVGDLAPDVNEAQLYEKFNSTGPISSIRVCRDAITRRSL--GYAYVNFQQPNDAERALD 78
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
TLN + KP RIM++++ P L
Sbjct: 79 TLNFDPVNGKP---------------CRIMWSQRDPSL 101
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 115/216 (53%), Gaps = 17/216 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LY GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYV-----GRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ--------GPGLASTNFP 261
AQ K ER + L Y ++ GP L S P
Sbjct: 368 AQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQP 403
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 105/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV G S+G+GFV + T E+A AI
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAI----- 155
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
AT+ GM L + G + + + ++ ++ N+YVKN++ DVDE L
Sbjct: 156 ATMNGMLLNDRKVFVGHFKSR--------REREAELGARAMEFTNIYVKNLHVDVDEQGL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FSQ G + SVK+MR + G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 208 QDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER + L+
Sbjct: 268 KRVERQNELK 277
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEVIKGQPV--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ + G S+GFGFV F + A++AI T+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGPILSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEVIKGQP---------------VRIMWSQRDPGL 93
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 131/266 (49%), Gaps = 33/266 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA + + +L ++F +G I S+ V+ +GKSK +GFV + + A A+E L
Sbjct: 206 YVKNLADSTTDDELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALNG 265
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ E Y GR Q+ + + + E I NLY+KN++D +D+
Sbjct: 266 KKFDEKEWYV-----GRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTIDDE 320
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS+ G I S K+MR +G S+G GFV FS+PDEA RA+ +NG + KPLYVA+
Sbjct: 321 KLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLYVAL 380
Query: 234 AQTKRERTSYLRI-----------------MYAKQGPGLAS-----TNFPVHPTLYQRAL 271
AQ K ER + L+ MY GPG+ P P Q A
Sbjct: 381 AQRKEERRNRLQAAFAQRTPVGPAVPTSLPMYHPAGPGMGPGMSYYGQHPPGPIPLQPAA 440
Query: 272 QVYQAPGFRHGG-MIPN--GFSSPPP 294
YQ R GG PN GF + PP
Sbjct: 441 FGYQPQLIRPGGAQFPNYMGFPNVPP 466
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 107/199 (53%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F+ FG I S KV G+SKGYGFVQ+ +ESA AIEK+
Sbjct: 115 FIKNLDKSIDNKALHDTFAAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNG 174
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ P +R +S + FNN+YVKNL D T++
Sbjct: 175 MLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVKNLADSTTDD----------------- 217
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
ELK+ F G ISS +MR N G SK FGFV F + D+A +A+ LNG F +K YV
Sbjct: 218 -ELKKVFEAYGPISSAVVMRDNEGKSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWYVG 276
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER + LR + ++
Sbjct: 277 RAQKKSEREAELRAKFEQE 295
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L ST+ +L++IFS+ G + S +V ++++ +S GY +V Y+ + A A+E
Sbjct: 27 YVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITR--RSLGYAYVNYNNAQDATRALEL 84
Query: 114 LYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
L V G + S R I++S + N+++KN++ +D
Sbjct: 85 LNFNAVNGKPIRIMFSHRDPSIRKSGT-------------------ANIFIKNLDKSIDN 125
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L F+ G I S K+ G SKG+GFV F + A AI +NG+L + K ++V
Sbjct: 126 KALHDTFAAFGTILSCKVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVG 185
Query: 233 IAQTKRER 240
++ER
Sbjct: 186 PFVRRQER 193
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 114/198 (57%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + + ++F+++G + S+ V V +G+SKG+GFV Y + E A A++ L+
Sbjct: 229 YIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDEGRSKGFGFVNYESHEEAQAAVDNLHD 288
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
++G +LY R Q+ A ++ + E++ NLYVKN+ DDVD+
Sbjct: 289 TDLKGKKLYV-----TRAQKKAEREEELRRSYEQAKMEKLSKYQGVNLYVKNLEDDVDDD 343
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G I+S K+M +G SKGFGFVCFS+PDEA +AI +N + KPLYV++
Sbjct: 344 KLRAEFEPFGTITSCKVMSDEKGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSL 403
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 404 AQRREVRRQQLESQIAQR 421
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 23/207 (11%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYST 103
S + P+ + L T+ + +IF+ G + S + V +D +S GY +V Y
Sbjct: 38 SISSAPSASLYVGELDPTVTEAMIFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLN 95
Query: 104 QESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYV 163
A+E+L + ++G R RI S D + N+++
Sbjct: 96 TADGERALEQLNYSLIKG--------RPCRIMWSQR----------DPALRKTGQGNIFI 137
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN+++ +D L F G + S K+ +G SKG+GFV + + A AI +NG+L
Sbjct: 138 KNLDEQIDNKALHDTFVAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGML 197
Query: 224 FHQKPLYVAIAQTKRERTSYLRIMYAK 250
+ K +YV ++ER S L M A+
Sbjct: 198 LNDKKVYVGPHIPRKERQSKLDEMKAQ 224
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 119/203 (58%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F K+G S KV++ GKS+G+GFV Y E A A+E +
Sbjct: 194 YIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G EL ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 252 ---NGTELNGKTVFVGRAQKKNE-RQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGM 389
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G S+GFGFV + ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KNERQAELK 277
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L I L++ FS G + S +V +S GY +V +S A A++ +
Sbjct: 14 YVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V+G + RI S +L + N+++KN++ +D L
Sbjct: 74 FDVVKGKPI--------RIMWSQRDPSLRKSGVG----------NVFIKNLDKSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G SKG+ FV F D A+RAI +NG+L + + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 236 TKRERTSYL 244
+++ER + L
Sbjct: 175 SRKEREAEL 183
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V FS P +A RA+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFSQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVVKGKP---------------IRIMWSQRDPSL 93
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 115/216 (53%), Gaps = 17/216 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LY GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYV-----GRAQKRVERQNELKRRFEQMKQDRATRYQGVNLYVKNLDDSIDDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ--------GPGLASTNFP 261
AQ K ER + L Y ++ GP L S P
Sbjct: 368 AQRKEERKAILTNQYMQRLSTVRALGGPLLGSFQQP 403
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 105/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV G S+G+GFV + T E+A AI
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAI----- 155
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
AT+ GM L + G + + + ++ ++ N+YVKN++ DVDE L
Sbjct: 156 ATMNGMLLNDRKVFVGHFKSR--------REREAELGARAMEFTNIYVKNLHVDVDEQGL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FSQ G + SVK+MR + G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 208 QDLFSQFGKMLSVKVMRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER + L+
Sbjct: 268 KRVERQNELK 277
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEVIKGQPV--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ + G S+GFGFV F + A++AI T+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDDHG-SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGPILSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEVIKGQP---------------VRIMWSQRDPGL 93
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 119/203 (58%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F K+G S KV++ GKS+G+GFV Y E A A+E +
Sbjct: 194 YIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G EL ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 252 ---NGTELNGKTVFVGRAQKKNE-RQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGM 389
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G S+GFGFV + ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KNERQAELK 277
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L I L++ FS G + S +V +S GY +V +S A A++ +
Sbjct: 14 YVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V+G + RI S +L + N+++KN++ +D L
Sbjct: 74 FDVVKGKPI--------RIMWSQRDPSLRKSGVG----------NVFIKNLDKSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G SKG+ FV F D A+RAI +NG+L + + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 236 TKRERTSYL 244
+++ER + L
Sbjct: 175 SRKEREAEL 183
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V FS P +A RA+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFSQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVVKGKP---------------IRIMWSQRDPSL 93
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 117/205 (57%), Gaps = 6/205 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +++ +L ++F K+G S KV+ +GKSKG+GFV + E A A++++Y
Sbjct: 194 YIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ RA + E + + ++ D NLYVKN++D +D+ L+
Sbjct: 254 KDMNGKSMFV--GRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFP 261
K ER ++L Y ++ +AS P
Sbjct: 371 KEERQAHLTNQYMQR---MASVRVP 392
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AI+K+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+++ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGDDMNDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M + G SKGFGFV F ++A +A++ + G + K ++V AQ
Sbjct: 209 EMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G R RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKG--------RPVRIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI+ +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 11/222 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N ID+ KL IF++FG S V+ + G+S+G+GFV + A A+ ++
Sbjct: 194 YIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G LY GR Q+ +K + + +E + + NLYVKN++D +D+
Sbjct: 254 KELNGRVLYV-----GRAQKRLERQG-ELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F+ G I+S K+M T+ G S+GFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFAPYGTITSAKVM-TDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVY 274
+AQ K ER + L Y ++ + + P PT YQ+ Y
Sbjct: 367 LAQRKEERKAILTNQYIQRLASIRAIPGPAIPTTYQQGSGYY 408
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIE
Sbjct: 102 FIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIE---- 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
T+ GM L + G + K + ++ + ++ N+Y+KN +D+D +L
Sbjct: 157 -TMNGMLLNDRKVFVGHFKSR--------KEREAEMGAKAVEFTNVYIKNFGEDIDSEKL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F++ G SV +M RG S+GFGFV F N +A RA+ +NG + + LYV AQ
Sbjct: 208 KNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER L+
Sbjct: 268 KRLERQGELK 277
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 24/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + + L+Q FS G I S +V V+++ +S GY ++ + A A++
Sbjct: 14 YVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITR--RSLGYAYINFQQPADAECALDT 71
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++G R RI S L + N+++KN+++ +D
Sbjct: 72 MNYEVIKG--------RPIRIMWSQRDPGLRKSGVG----------NIFIKNMDESIDNK 113
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K++ G SKG+GFV F + ANRAI T+NG+L + + ++V
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGH 172
Query: 234 AQTKRERTSYL 244
++++ER + +
Sbjct: 173 FKSRKEREAEM 183
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 11/222 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N ID+ KL IF++FG S V+ + G+S+G+GFV + A A+ ++
Sbjct: 194 YIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G LY GR Q+ +K + + +E + + NLYVKN++D +D+
Sbjct: 254 KELNGRVLYV-----GRAQKRLERQG-ELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F+ G I+S K+M T+ G S+GFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFAPYGTITSAKVM-TDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVY 274
+AQ K ER + L Y ++ + + P PT YQ+ Y
Sbjct: 367 LAQRKEERKAILTNQYIQRLASIRAIPGPAIPTTYQQGSGYY 408
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIE
Sbjct: 102 FIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIE---- 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
T+ GM L + G + K + ++ + ++ N+Y+KN +D+D +L
Sbjct: 157 -TMNGMLLNDRKVFVGHFKSR--------KEREAEMGAKAVEFTNVYIKNFGEDIDSEKL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F++ G SV +M RG S+GFGFV F N +A RA+ +NG + + LYV AQ
Sbjct: 208 KNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER L+
Sbjct: 268 KRLERQGELK 277
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 94/191 (49%), Gaps = 24/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + + L+Q FS G I S +V V+++ +S GY ++ + A A++
Sbjct: 14 YVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITR--RSLGYAYINFQQPADAECALDT 71
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++G R RI S L + N+++KN+++ +D
Sbjct: 72 MNYEVIKG--------RPIRIMWSQRDPGLRKSGVG----------NIFIKNMDESIDNK 113
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K++ G SKG+GFV F + ANRAI T+NG+L + + ++V
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGH 172
Query: 234 AQTKRERTSYL 244
++++ER + +
Sbjct: 173 FKSRKEREAEM 183
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 134/256 (52%), Gaps = 26/256 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + + +L ++F FG I S+ V+ DGKSK +GFV + + A A+ L
Sbjct: 183 FVKNLGESTTDDELKEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLNG 242
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+E E Y GR Q+ + + + E I D+ NLY+KN++DDVD+
Sbjct: 243 KKIEDKEWYV-----GRAQKKSEREAELRAKYEQERKERI-DRYQGANLYLKNLDDDVDD 296
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F+ G I+S K+MR +G SKG GFV +S P+EANRA +NG + KP+YVA
Sbjct: 297 ERLREIFADFGSITSCKVMRDAQGQSKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVA 356
Query: 233 IAQTKRERTSYLRIMYAK-QGPGLASTNFPVH----PTLYQR-------ALQVYQAPGFR 280
+AQ K ER + L+ +A+ + P +T P++ P L Q+ AL Q GF
Sbjct: 357 MAQRKEERRAKLQAQFAQMRSPVGVATTMPMYHPGAPGLGQQLFYGQPPALMPPQPAGFA 416
Query: 281 HG----GMIPNGFSSP 292
+ GM P G P
Sbjct: 417 YQQQMLGMRPGGGQLP 432
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 106/196 (54%), Gaps = 19/196 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F FG+I S KV +G+SKGYGFVQ+ +ESA AI+K+
Sbjct: 95 FIKNLDRAIDNKALHDTFVSFGNILSCKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNG 154
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V +++ P +R +++ FNN++VKNL + T++ EL
Sbjct: 155 MLVAEKQVFVGPFVRRQEREQNGKFNNVFVKNLGESTTDD------------------EL 196
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F G I+S +MR + G SK FGFV F NPDEA +A+ LNG K YV AQ
Sbjct: 197 KEVFGAFGKITSAVVMRDSDGKSKCFGFVNFENPDEAAKAVVGLNGKKIEDKEWYVGRAQ 256
Query: 236 TKRERTSYLRIMYAKQ 251
K ER + LR Y ++
Sbjct: 257 KKSEREAELRAKYEQE 272
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + +L+ +F++ G + S +V +S GY +V Y+ + A A+E L
Sbjct: 7 YVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALELLN 66
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G +A RI S D + N+++KN++ +D L
Sbjct: 67 FTPVNG--------KAVRIMFSHR----------DPSIRKSGTANIFIKNLDRAIDNKAL 108
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F G I S K+ + G SKG+GFV F + A AI+ +NG+L +K ++V
Sbjct: 109 HDTFVSFGNILSCKVATDSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGPFV 168
Query: 236 TKRER 240
++ER
Sbjct: 169 RRQER 173
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V E +L F+Q G + S+++ R T R + G+ +V ++N +A RA+
Sbjct: 5 SLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSL--GYAYVNYNNVQDATRAL 62
Query: 217 NTLN 220
LN
Sbjct: 63 ELLN 66
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 117/201 (58%), Gaps = 10/201 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + L + F ++G I S V+ DGKSK +GFV + E A A++ L
Sbjct: 222 YVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNG 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ S + +K+ + +E +DK NLYVKN++D +D+
Sbjct: 282 KKFDDKEWYV-----GKAQKK-SEREVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDD 335
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS+ G I+S K+MR GIS+G GFV FS P+EA+RA+ +NG + KPLYVA
Sbjct: 336 EKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVA 395
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K ER + L+ +++ P
Sbjct: 396 LAQRKEERRARLQAQFSQMRP 416
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 106/189 (56%), Gaps = 14/189 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID LH+ FS FG I S K+ G+SKGYGFVQY ++E+A AI+KL
Sbjct: 131 FIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNG 190
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++Y L ++ D ++++ + N+YVKN++D E +L+
Sbjct: 191 MLMNDKQVYVGVF-------------LRKQDRDSEMSKTKFN-NIYVKNLSDSTSEDDLR 236
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G I+SV +MR G SK FGFV F NP++A +A++ LNG F K YV AQ
Sbjct: 237 KTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQK 296
Query: 237 KRERTSYLR 245
K ER L+
Sbjct: 297 KSEREVELK 305
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ + +L+ +F++ G + S +V G+S GYG+V YS Q+ A AI+ L
Sbjct: 43 YVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVLN 102
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ + R + N+++KNLD +D L
Sbjct: 103 FTPLNNKTIRVSVSRRDPTDRKSGAGNIFIKNLD------------------KSIDIKAL 144
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S KI G SKG+GFV + + + A AI+ LNG+L + K +YV +
Sbjct: 145 HETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFL 204
Query: 236 TKRERTSYL 244
K++R S +
Sbjct: 205 RKQDRDSEM 213
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINT 218
+LYV +++ V + +L F+Q G + SV++ R + G S G+G+V +SN +A RAI+
Sbjct: 41 SLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDV 100
Query: 219 LNGILFHQKPLYVAIAQ 235
LN + K + V++++
Sbjct: 101 LNFTPLNNKTIRVSVSR 117
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 23/227 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + LH++F K+G I S +V++ +DGKS+G+GFV + ++A A+++L A
Sbjct: 195 YVKNFGEDLTEEALHEMFEKYGSITSHRVMM-KDGKSRGFGFVAFENPDAAERAVQELNA 253
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ +G LY GR Q+ + +K + + E L + NLYVKN++D +D
Sbjct: 254 KELSDGKVLYV-----GRAQKKNE-RQMELKRRFEQLKMERLTRYHGVNLYVKNLDDTID 307
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M + G SKGFGFVCFS PDEA +A+ +NG + KPLYV
Sbjct: 308 DERLRKEFAPYGTITSAKVM-LDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYV 366
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPG 278
A+AQ K ER S+L Y ++ V+ Q QVYQ G
Sbjct: 367 ALAQRKEERKSHLASQYIQR----------VNSLRMQHIGQVYQQSG 403
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 104/191 (54%), Gaps = 16/191 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G+SKGYGFV + T+ESA +IEK
Sbjct: 102 FIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEK--- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L + GR + K + ++ E+ L N+YVKN +D+ E L
Sbjct: 159 --VNGMLLNEKKVFVGRF--------ISRKEREKELGEKAKLFTNVYVKNFGEDLTEEAL 208
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIA 234
+ F + G I+S ++M + G S+GFGFV F NPD A RA+ LN L K LYV A
Sbjct: 209 HEMFEKYGSITSHRVMMKD-GKSRGFGFVAFENPDAAERAVQELNAKELSDGKVLYVGRA 267
Query: 235 QTKRERTSYLR 245
Q K ER L+
Sbjct: 268 QKKNERQMELK 278
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 92/191 (48%), Gaps = 23/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + I L + FS G + S +V ++++ +S GY +V + A A++
Sbjct: 14 YVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITR--RSLGYAYVNFQQPADAERALDT 71
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ T++G R RI S +L + N+++KN++ +D
Sbjct: 72 MNFDTIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKKIDNK 113
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ FS G I S K+ + +G SKG+GFV F + AN +I +NG+L ++K ++V
Sbjct: 114 AMYDTFSAFGNILSCKVAQDEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGR 173
Query: 234 AQTKRERTSYL 244
+++ER L
Sbjct: 174 FISRKEREKEL 184
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 116/198 (58%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ++ + + SKFG+ S + + ++GKSKG+GFV Y + E+A A+++L
Sbjct: 224 FVKNVDLSVTEKEFEDLVSKFGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDELND 283
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE---EILDKNLYVKNINDDVDEI 173
V G +L+A GR Q+ + K +++ E + NLYVKN++D+ D+
Sbjct: 284 KEVNGQKLWA-----GRAQKRVERDTELRKTIEEKRQEFDAKSAGVNLYVKNLDDEWDDD 338
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ F G I+S K+M+ RG+S+ FGFVC+S+P+EA +A++ +NG + KPLYVA+
Sbjct: 339 RLRAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATKAVSEMNGKMIGSKPLYVAL 398
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 399 AQRREARRQALESQIAQR 416
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 14/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F+ FG+I S KV V +DGKS+G+ FV Y T E+A AI+
Sbjct: 131 FIKNLDESIDNKALHDTFAAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIK---- 186
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
V+GM L + G +++ K E+ N++VKN++ V E E
Sbjct: 187 -GVDGMMLNDKKVFVG--------HHIGKKERQSKAEEQRAHFTNVFVKNVDLSVTEKEF 237
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ S+ G S+ + G SKGFGFV + + + A +A++ LN + + L+ AQ
Sbjct: 238 EDLVSKFGETVSIALSLDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQ 297
Query: 236 TKRERTSYLR 245
+ ER + LR
Sbjct: 298 KRVERDTELR 307
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V Y A+E
Sbjct: 43 YVGELDPSVTEAMLFEIFNIIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADGERALEH 100
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G R RI S D + N+++KN+++ +D
Sbjct: 101 LNYSAIKG--------RPCRIMWSQR----------DPALRKTGQGNIFIKNLDESIDNK 142
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ G S+GF FV + + A+ AI ++G++ + K ++V
Sbjct: 143 ALHDTFAAFGEILSCKVGVDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGH 202
Query: 234 AQTKRERTS 242
K+ER S
Sbjct: 203 HIGKKERQS 211
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 109/192 (56%), Gaps = 10/192 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + ++F K+G I S+ + Q+GKS+G+GFV +S E A A+E+L
Sbjct: 263 YVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAVEELND 322
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G +L+ GR Q+ S ++ + E L K NLY+KN+ +D D+
Sbjct: 323 TEFHGQKLFL-----GRAQKK-SEREEELRRAYEAAKNEKLSKYQGVNLYIKNLPEDFDD 376
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F+ G +S K+MRT G S+GFGFVC+S P+EAN+A+ +NG + +PLYVA
Sbjct: 377 ERLQEEFAPFGTTTSAKVMRTPTGASRGFGFVCYSAPEEANKAVAEMNGKMIENRPLYVA 436
Query: 233 IAQTKRERTSYL 244
+AQ K R L
Sbjct: 437 LAQRKDVRHQQL 448
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 101/198 (51%), Gaps = 25/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG I S KV ++ G S GYGFV Y + ++A AI+ +
Sbjct: 171 FIKNLDEAIDNKALHDTFAAFGKILSCKVASNEHG-SLGYGFVHYESNDAAEAAIKHVNG 229
Query: 117 ATVEGMELY-----APSLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y + R +I+E+ A + N+YVKNLD VT+E
Sbjct: 230 MLLNDKKVYVGHHISKKDRQAKIEEARAHYTNVYVKNLDPAVTQE--------------- 274
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E ++ F + G I+S I G S+GFGFV FS ++A +A+ LN FH + L+
Sbjct: 275 ---EFEKLFEKYGKITSAAIATDQEGKSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKLF 331
Query: 231 VAIAQTKRERTSYLRIMY 248
+ AQ K ER LR Y
Sbjct: 332 LGRAQKKSEREEELRRAY 349
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ L ++ L +IF+ G + S +V + +S GY +V + E + A+E+L
Sbjct: 83 YVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALEQLN 142
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G R RI S D N+++KN+++ +D L
Sbjct: 143 YTPIRG--------RPCRIMWSQR----------DPGQRRAGQGNIFIKNLDEAIDNKAL 184
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F+ G I S K+ G S G+GFV + + D A AI +NG+L + K +YV
Sbjct: 185 HDTFAAFGKILSCKVASNEHG-SLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHI 243
Query: 236 TKRERTSYLR 245
+K++R + +
Sbjct: 244 SKKDRQAKIE 253
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 20/101 (19%)
Query: 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEAN 213
++ +LYV + +V+E L + F+ G +SS+++ R T R + G+ +V F N +++
Sbjct: 78 VNTSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSL--GYAYVNFLNAEDSE 135
Query: 214 RAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPG 254
RA+ LN Y I R RIM++++ PG
Sbjct: 136 RALEQLN---------YTPI------RGRPCRIMWSQRDPG 161
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 123/215 (57%), Gaps = 13/215 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ T L +IF ++G I S+ V+ +GKS+ +GFV + + A ++E L
Sbjct: 211 YVKNLSETTTEEDLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNG 270
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
T + E Y G+ Q+ S + +K + +E +DK NLYVKN++D + +
Sbjct: 271 KTFDEKEWYV-----GKAQKK-SEREVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITD 324
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS+ G I+S K+MR G+S+G GFV FS +EA+RA+ +NG + KPLYVA
Sbjct: 325 DKLKELFSEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEASRALTEMNGKMVVSKPLYVA 384
Query: 233 IAQTKRERTSYLRIMYAKQGPGLA---STNFPVHP 264
+AQ K ER + L+ Y++ P +A P++P
Sbjct: 385 LAQRKEERRARLQAQYSQIRPAMAPPIGPRMPIYP 419
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL IDN LH FS FG I S KV G+S GYGFVQ+ +ESA NAI+KL
Sbjct: 120 YIKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNG 179
Query: 117 ATVEGMELY-APSLRAGRIQ---ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR + + A+FNN+YVKNL + TEE
Sbjct: 180 MLLNDKQVYVGPFLRKQERESAIDKATFNNVYVKNLSETTTEE----------------- 222
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F + G I+S +MR G S+ FGFV F NPD+A +++ LNG F +K YV
Sbjct: 223 -DLKKIFGEYGTITSAVVMRDGNGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVG 281
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 282 KAQKKSEREVELK 294
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 24/196 (12%)
Query: 54 FIP---FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALN 109
F+P + +L + +L+ +F++ G + S +V +S GYG+V Y+ A
Sbjct: 26 FVPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQ 85
Query: 110 AIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
AIE L V G + S R I++S + N+Y+KN++
Sbjct: 86 AIEVLNFTPVNGKPIRIMYSYRDPTIRKSGT-------------------GNIYIKNLDK 126
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+D L FS G I S K+ + G S G+GFV F N + A AI+ LNG+L + K
Sbjct: 127 AIDNKALHDTFSAFGSILSCKVATDSLGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQ 186
Query: 229 LYVAIAQTKRERTSYL 244
+YV K+ER S +
Sbjct: 187 VYVGPFLRKQERESAI 202
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 18/101 (17%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEA 212
+ + +LYV ++ +V E +L F+Q G + S+++ R T+R S G+G+V ++N +A
Sbjct: 25 QFVPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSR-RSLGYGYVNYNNVHDA 83
Query: 213 NRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
+AI LN + KP +RIMY+ + P
Sbjct: 84 AQAIEVLNFTPVNGKP---------------IRIMYSYRDP 109
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 110/198 (55%), Gaps = 9/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER + L Y ++
Sbjct: 368 AQRKEERKAILTNQYMQR 385
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEFT--------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 110/198 (55%), Gaps = 9/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER + L Y ++
Sbjct: 368 AQRKEERKAILTNQYMQR 385
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEFT--------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 164/335 (48%), Gaps = 47/335 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L +IF +G+I S+ ++V DGKS+ +GF+ + + + A A+E+L
Sbjct: 220 FVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNG 279
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y GR Q+ S + +K + ++ DK NLY+KN++D + +
Sbjct: 280 KKINDKEWYV-----GRAQKK-SEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGD 333
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS G I+S KIMR G+SKG GFV FS +EA++A+ +NG + KPLYVA
Sbjct: 334 DQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 393
Query: 233 IAQTKRERTSYLRIMYAKQG---PGL--ASTNFPVHPTLYQRALQVYQAPGFRHGG---- 283
AQ K +R + L+ + Q PG+ + P + + Q PG R G
Sbjct: 394 FAQRKEDRKAMLQPGFGFQQQLVPGMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSA 453
Query: 284 ------------MIPNG--FSSPPPS------PLFLTRAGQAAANNLTNGNQRAAANN-- 321
M+P G + PP P+ G + ++ R A +
Sbjct: 454 QGQQSAQPFQQQMLPRGRVYRYPPAHNMPDVPPMPGVAGGMIQSYDMGGFPVRDAGLSPA 513
Query: 322 ------SMLAVASPDERKDILGQGLYPLVKKLKVN 350
S LA A+P++++ ILG+ LYPLV+ L+ N
Sbjct: 514 PIGTLTSALANANPEQQRTILGESLYPLVELLEQN 548
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 98/193 (50%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV + G+SKG+GFVQY E+A +AI+ L
Sbjct: 129 FIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNG 188
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +Y P LR + S FNN++VKNL + T+E
Sbjct: 189 MLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKE----------------- 231
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + F G I+S IM G S+ FGF+ F +PD+A RA+ LNG + K YV
Sbjct: 232 -DLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVG 290
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 291 RAQKKSEREIELK 303
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L +++ + +L++ F G + S +V + G+S G +V ++ A A+E L
Sbjct: 42 YVGDLEASVTDSQLYE-FQPGGQVMSVRVCRDIRLGRSFGKPYVNFNNPVDAARALELLN 100
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
A + G + R+ S D + N+++KN++ +D L
Sbjct: 101 FAPLNGKPI--------RVMYSNR----------DPSSRRSGSANIFIKNLDKAIDHKTL 142
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKGFGFV + + A AI +LNG+L + KP+YV
Sbjct: 143 HDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFL 202
Query: 236 TKRER 240
K+ER
Sbjct: 203 RKQER 207
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 110/198 (55%), Gaps = 9/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER + L Y ++
Sbjct: 368 AQRKEERKAILTNQYMQR 385
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEFT--------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 114/209 (54%), Gaps = 9/209 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL ++F +G S +V+ GKSKG+GFV + E A A++ +
Sbjct: 194 YIKNFGEDMDDEKLKELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
+ G ++Y GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KELNGRQVYV-----GRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 RLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPV 262
AQ K ER ++L Y ++ + + PV
Sbjct: 368 AQRKEERQAHLTNQYMQRMATVRAVPNPV 396
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 106/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM-- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + N+Y+KN +D+D+ +L
Sbjct: 159 ---NGMLLNDRKVFVGRFKSR--------KEREAELGARAREFTNVYIKNFGEDMDDEKL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F G SV++M + G SKGFGFV F ++A +A++ +NG + + +YV AQ
Sbjct: 208 KELFGNYGPALSVRVMTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQ 267
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 268 KKGERQNELK 277
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G L RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGRPL--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 121/207 (58%), Gaps = 17/207 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L+ +F +FG + S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G +Y G Q+ ++ +K + VT++ + NLYVKN++D +D+
Sbjct: 254 KELNGKHIYV-----GPAQKKVD-RHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A++ +NG + KPLYVA
Sbjct: 308 ERLQKEFSPFGTITSTKVM-TEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVA 366
Query: 233 IAQTKRERTSYL------RIMYAKQGP 253
+AQ K ER ++L R+ + GP
Sbjct: 367 LAQRKEERQAHLTNQYIQRMASVRSGP 393
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 108/194 (55%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ FS FG+I S KVV ++G SKG+GFV + T+E+A AIEK+
Sbjct: 102 FIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L + T+E N+Y+KN D +D+ L
Sbjct: 161 MLLNDRKVFVGQFKSRKEREA----ELGTR------TKEFT--NVYIKNFGDRMDDKTLN 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G + SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 GLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQK 268
Query: 237 KRERTSYLRIMYAK 250
K +R L+ + +
Sbjct: 269 KVDRHIELKRKFEQ 282
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 24/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + L++ FS G I S +V V+++ +S GY V + A A++
Sbjct: 14 YVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITR--RSLGYASVNFEQPADAERALDT 71
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++G + RI S +L + N+++KN+N +D
Sbjct: 72 MNFDVIKGKPV--------RIMWSQRDPSLRRSGVG----------NVFIKNLNKTIDNK 113
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K++ G SKG GFV F + A RAI +NG+L + + ++V
Sbjct: 114 ALYDTFSAFGNILSCKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQ 172
Query: 234 AQTKRERTSYL 244
++++ER + L
Sbjct: 173 FKSRKEREAEL 183
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 115/215 (53%), Gaps = 9/215 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +F +FG + S KV+ G S+G+GFV + E A A++ +
Sbjct: 194 YVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G +LY GR Q+ N + + D NLYVKN++D + +
Sbjct: 254 KEVSGQQLYV-----GRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNLDDSISDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRTVFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQ 268
AQ K ER + L Y ++ + + PV + Q
Sbjct: 368 AQRKEERKAILTNQYMQRLSTVQALGRPVMGSFQQ 402
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETNEAAQQAISTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ + + + N+YVKN++ D+DE L+
Sbjct: 161 MLLNDRKVFVGHFKSHREREA------------ELGAQALAFTNIYVKNLHVDMDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G + SVK+MR N G S+GFGFV F +EA +A++ +NG + LYV AQ
Sbjct: 209 DLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RGERQNELK 277
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
++G + P LR + N+++KNL+ D
Sbjct: 74 FEVIKGQPIRIMWSQRDPGLR------KSGVGNVFIKNLE------------------DS 109
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D L FS G I S K+ G S+GFGFV F + A +AI+T+NG+L + + +
Sbjct: 110 IDSKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETNEAAQQAISTMNGMLLNDRKV 168
Query: 230 YVAIAQTKRERTSYL 244
+V ++ RER + L
Sbjct: 169 FVGHFKSHREREAEL 183
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGQP---------------IRIMWSQRDPGL 93
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 110/198 (55%), Gaps = 9/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER + L Y ++
Sbjct: 368 AQRKEERKAILTNQYMQR 385
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEFT--------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 110/198 (55%), Gaps = 9/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER + L Y ++
Sbjct: 368 AQRKEERKAILTNQYMQR 385
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEFT--------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 70 LHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L++ FS G I S +V +S GY ++ + A A++ + ++G +
Sbjct: 27 LYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPI---- 82
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
RI S L + N+++KN+ D +D L FS G I S
Sbjct: 83 ----RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
K+ G S+GFGFV F + A +AINT+NG+L + + ++V +++RER + L
Sbjct: 129 KVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAEL 183
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 136/276 (49%), Gaps = 51/276 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + + ++F+K+GD+ SS + S +GKS+G+GFV ++T E+A A+E+L
Sbjct: 298 YVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAVEELNG 357
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G ELY GR Q+ ++ + +E +K NLY+KN+ DDVD+
Sbjct: 358 KDFRGQELYV-----GRAQKKHEREEELRRSYEA-ARQEKANKYQGVNLYIKNLGDDVDD 411
Query: 173 IELKQYFSQCGIISSVKIMRTN-------------------------------------- 194
+L+Q FS+ G I+S K+MR +
Sbjct: 412 DKLRQMFSEYGPITSAKVMRDSVVESAAEDEKDKENKKEDEEEKEGETAEKKAETKEKRK 471
Query: 195 RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPG 254
G SKGFGFVCFSNPD+A +A+ +N + KPLYVA+AQ K R S L +
Sbjct: 472 LGKSKGFGFVCFSNPDDATKAVTEMNQRMIDNKPLYVALAQRKDVRKSQLEASIQARN-Q 530
Query: 255 LASTNFPVHPTLYQRALQ--VYQAPGFRHGGMIPNG 288
L + Q+ +Q VY APG + G M P G
Sbjct: 531 LRMQQAAAQAGIPQQFMQQPVYYAPGQQPGFMPPAG 566
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 106/198 (53%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A NAI+ +
Sbjct: 205 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAANAIKHVNG 264
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + +E A+F N+YVKN+ +VT+E
Sbjct: 265 MLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIPAEVTDE--------------- 309
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E ++ F++ G ++S + R++ G S+GFGFV F+ + A++A+ LNG F + LY
Sbjct: 310 ---EFRELFAKYGDVTSSSLARSDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELY 366
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 367 VGRAQKKHEREEELRRSY 384
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+ A+E
Sbjct: 117 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNATADGEKALED 174
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 175 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 216
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K +YV
Sbjct: 217 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGY 276
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 277 HIPKKDRQSKFEEMKA 292
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V ++ + +A+
Sbjct: 115 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSL--GYAYVNYNATADGEKAL 172
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 173 EDLNYTLIKGRP---------------CRIMWSQRDPALRKT 199
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 117/203 (57%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L + FSK+G S KV+ GKSKG+GFV + E A A++ +
Sbjct: 194 YIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KDVNGKIMFV-----GRAQKKVE-RQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGM 389
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ + R +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKCRREREA---------ELGAKAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M G SKGFGFV F ++AN+A++ +NG + K ++V AQ
Sbjct: 209 ETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 130/230 (56%), Gaps = 15/230 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L +IF ++G+I S+ V++ DGKS+ +GF+ + ++A A+++L
Sbjct: 222 FVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNG 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y GR Q+ S + +K + + ++ DK NLY+KN++D + +
Sbjct: 282 KKINDKEWYV-----GRAQKK-SEREMELKRRFEQILKDAADKYQGLNLYLKNLDDSIGD 335
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+MR G+SKG GFV FS +EA++A+ +NG + KPLYVA
Sbjct: 336 DQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 395
Query: 233 IAQTKRERTSYLRIMYAKQGPGLAST-----NFPVHPTLYQRALQVYQAP 277
AQ K +R + L+ +++ P + T P++P + + L QAP
Sbjct: 396 FAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMAPQQLFYGQAP 445
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH+ FS FG I S KV + + G+SKG+GFVQY +E+A NAI+ L
Sbjct: 131 FIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNG 190
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++ P LR S FNN++VKNL + T+E
Sbjct: 191 MLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKE----------------- 233
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + F + G I+S +M G S+ FGF+ F NPD A+RA+ LNG + K YV
Sbjct: 234 -DLLKIFGEYGNITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVG 292
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 293 RAQKKSEREMELK 305
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 29/199 (14%)
Query: 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQ 104
A PT + +L ++ + +L+++FS+ G + S +V V S+ +S GY +V ++
Sbjct: 34 AQPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSR--RSLGYAYVNFNNP 91
Query: 105 ESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNL---DDDVTEEILDKNL 161
A A+E L +AP NN ++ + D + N+
Sbjct: 92 LDAARALEVLN---------FAP------------LNNKPIRVMYSNRDPSSRRSGSANI 130
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
++KN++ +D L + FS G I S K+ G SKGFGFV + + A AI +LNG
Sbjct: 131 FIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGFGFVQYEKEEAAQNAIKSLNG 190
Query: 222 ILFHQKPLYVAIAQTKRER 240
+L + KP++V K+ER
Sbjct: 191 MLINDKPVFVGPFLRKQER 209
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNP 209
V + + +LYV ++ V + +L + FSQ G + SV++ R T+R S G+ +V F+NP
Sbjct: 33 VAQPLPTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSR-RSLGYAYVNFNNP 91
Query: 210 DEANRAINTLNGILFHQKPLYV 231
+A RA+ LN + KP+ V
Sbjct: 92 LDAARALEVLNFAPLNNKPIRV 113
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 131/243 (53%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 190 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNG 249
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 250 KEISGKVIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 303
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+ ++M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 304 EKLRKEFSPFGSITRAEVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 362
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 363 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 414
Query: 291 SPP 293
PP
Sbjct: 415 RPP 417
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 98 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 157 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 204
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 205 ELFSQFGKTLSVKVMRDPTGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQK 264
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 265 KVERQAELK 273
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 110/198 (55%), Gaps = 9/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER + L Y ++
Sbjct: 368 AQRKEERKAILTNQYMQR 385
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEFT--------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGPILSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 119/196 (60%), Gaps = 11/196 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N ++D KL ++F K G+I +S VV+++ GKSKG+GFV + E+A A+ +L
Sbjct: 195 FVKNFGDSLDEEKLKEMFGKHGEI-TSCVVMAESGKSKGFGFVAFEAPEAAEAAVNELNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+EG +L R Q+ A + +K+ + E +++ NLY+KN+ D +D+
Sbjct: 254 LEIEGRKLVV-----CRAQKKAE-RTMELKSRFEAQKMERINRYQGVNLYIKNLEDGLDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L+ FS G I+S K+M+ +GISKGFGFVCFS+PDEA +A+ +NG + KPLYVA
Sbjct: 308 ERLRSEFSTYGTITSAKVMKDEKGISKGFGFVCFSSPDEATKAVTEMNGRILVTKPLYVA 367
Query: 233 IAQTKRERTSYLRIMY 248
+AQ K ER + L +
Sbjct: 368 LAQRKEERRAQLSTQF 383
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 100/195 (51%), Gaps = 13/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FG+I S K+ V S+GYGFV Y T+E+A AI
Sbjct: 102 FIKNLDKNIDNKGLYDAFSAFGNILSCKIAVDSKNVSRGYGFVHYETKEAAHEAI----- 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A V GM L + G ++ L D + KN++VKN D +DE +LK
Sbjct: 157 AKVNGMMLNDKKVFVGEFMSKRE----RLEKLGDQAKK---FKNVFVKNFGDSLDEEKLK 209
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G I+S +M G SKGFGFV F P+ A A+N LNG+ + L V AQ
Sbjct: 210 EMFGKHGEITSCVVM-AESGKSKGFGFVAFEAPEAAEAAVNELNGLEIEGRKLVVCRAQK 268
Query: 237 KRERTSYLRIMYAKQ 251
K ERT L+ + Q
Sbjct: 269 KAERTMELKSRFEAQ 283
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 57/227 (25%)
Query: 21 SLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDI 80
SLYVGDL+ DV AM L + FS+ G +
Sbjct: 12 SLYVGDLNP--------------DVTEAM--------------------LFEKFSQTGPV 37
Query: 81 QSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQES 137
S +V +V++ +S GY +V + A AI+ + ++G R RI S
Sbjct: 38 LSIRVCRDLVTR--RSLGYAYVNFQQPADAERAIDTMNYDPIKG--------RPCRIMWS 87
Query: 138 ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI 197
L + N+++KN++ ++D L FS G I S KI ++ +
Sbjct: 88 QRDPTLRRSGVG----------NIFIKNLDKNIDNKGLYDAFSAFGNILSCKIAVDSKNV 137
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
S+G+GFV + + A+ AI +NG++ + K ++V +KRER L
Sbjct: 138 SRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGEFMSKRERLEKL 184
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 110/198 (55%), Gaps = 9/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER + L Y ++
Sbjct: 368 AQRKEERKAILTNQYMQR 385
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEFT--------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGPILSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 117/203 (57%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L + FSK+G S KV+ GKSKG+GFV + E A A++ +
Sbjct: 200 YIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNG 259
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 260 KDVNGKIMFV-----GRAQKKVE-RQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDD 313
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 314 EKLRKEFSPFGSITSAKVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 372
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 373 LAQRKEERKAHLTNQYMQRIAGM 395
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 108 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 166
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ + R +E+ L E N+Y+KN +D+D+ LK
Sbjct: 167 MLLNDRKVFVGRFKCRREREA---------ELGAKAKEFT---NVYIKNFGEDMDDERLK 214
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M G SKGFGFV F ++AN+A++ +NG + K ++V AQ
Sbjct: 215 ETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQK 274
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 275 KVERQAELK 283
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 110/198 (55%), Gaps = 9/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER + L Y ++
Sbjct: 368 AQRKEERKAILTNQYMQR 385
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEFT--------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGPILSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 116/206 (56%), Gaps = 17/206 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ +++D ++F FG S ++V ++G SK +GFV Y E A A+E+++
Sbjct: 248 YVKNIDASVDQKAFEEMFHPFGTTVSCVLMVDEEGNSKEFGFVNYENHEDARRAVEEMHE 307
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++Y GR Q+ ++ + + EE L K NL+VKNI++ +D+
Sbjct: 308 KEIGGKQIYV-----GRAQKKFEREE-ELRRQYEKIREEKLSKYQGVNLFVKNIDESIDD 361
Query: 173 IELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+L+Q FS G I+S KIM + GISKGFGFVCFSNPDEA +A+ +N + KP+YV
Sbjct: 362 EKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATKAVTEMNNRMLANKPIYV 421
Query: 232 AIAQTKRERTSYL------RIMYAKQ 251
A+AQ K R L R M A Q
Sbjct: 422 ALAQRKEVRRQQLAAQMQQRAMRAHQ 447
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 96/197 (48%), Gaps = 19/197 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +TID+ LH FS FG I S K+ + + +S G+GFV Y T E A NAI+ +
Sbjct: 156 FIKNLHTTIDHKALHDTFSAFGKILSCKIAMDGE-RSLGHGFVHYETMEMAENAIKHVNG 214
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT-EEILDK--NLYVKNINDDVDEI 173
+ ++Y L++ + T EE K N+YVKNI+ VD+
Sbjct: 215 MLLNDQQVYV---------------GLHISKKERSSTIEEKRSKFTNIYVKNIDASVDQK 259
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
++ F G S +M G SK FGFV + N ++A RA+ ++ K +YV
Sbjct: 260 AFEEMFHPFGTTVSCVLMVDEEGNSKEFGFVNYENHEDARRAVEEMHEKEIGGKQIYVGR 319
Query: 234 AQTKRERTSYLRIMYAK 250
AQ K ER LR Y K
Sbjct: 320 AQKKFEREEELRRQYEK 336
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 27/199 (13%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQES 106
ATP + + +L ++ L ++F+ G + S + V +D +S GYG++ Y
Sbjct: 62 ATPASL-YIGDLEPSVTEAMLFEVFNMVGPVAS--IRVCRDAVTRRSLGYGYINYLDIAD 118
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
A A++ L TV G + RI S D N+++KN+
Sbjct: 119 AERALDTLNYTTVRGNPV--------RIMWSNR----------DPALRRAGTGNIFIKNL 160
Query: 167 NDDVDEIELKQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
+ +D L FS G I S KI M R + G GFV + + A AI +NG+L +
Sbjct: 161 HTTIDHKALHDTFSAFGKILSCKIAMDGERSL--GHGFVHYETMEMAENAIKHVNGMLLN 218
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ +YV + +K+ER+S +
Sbjct: 219 DQQVYVGLHISKKERSSTI 237
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 115/192 (59%), Gaps = 9/192 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + FS+FG + + ++ +GKS+G+GFV + + + A A+E L
Sbjct: 210 YVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNG 269
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
A + +L+ GR Q+ A L +K+ + V I + NLYVKN++ VD+
Sbjct: 270 AMLGSKKLFV-----GRAQKKAERQEL-LKHEKEMVNCNIGKEKASNLYVKNLDASVDDD 323
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+++FS CG I+S K+MR + G+SKGFGFVCFS +EA +A+ TLNG L H + LY+A+
Sbjct: 324 KLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAM 383
Query: 234 AQTKRERTSYLR 245
AQ K +R LR
Sbjct: 384 AQRKEDRQRVLR 395
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 17/190 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I++ L IF KFG+I S KV ++GKSK +GFVQ+ + +SA A+ L
Sbjct: 120 FVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALND 178
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLD-DDVTEEILDKNLYVKNINDDVDEIEL 175
++G +L+ +VK + + +EE N+YVKN+ +D+ E +
Sbjct: 179 TMLDGKKLFVSK---------------FVKKCERKEASEETKFTNVYVKNLGEDLTEDII 223
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS+ G + +V IM+ G S+GFGFV F +PDEA +A+ LNG + K L+V AQ
Sbjct: 224 RDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQ 283
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 284 KKAERQELLK 293
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 20/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + +L +FS G + S ++ S GKS Y +V + A A+ L
Sbjct: 32 YVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACLN 91
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + RI S D + + NL+VKN++ ++ L
Sbjct: 92 HTKLMGKPM--------RIMWSHR----------DPLPRKTGLANLFVKNLDPSINSASL 133
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F + G I S K+ N G SK FGFV F + D A A+N LN + K L+V+
Sbjct: 134 QDIFCKFGNILSCKVAEEN-GKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFV 192
Query: 236 TKRER 240
K ER
Sbjct: 193 KKCER 197
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEAN 213
E+ LYV +++ +V E+EL FS G + SV++ R + G S + +V F +P +A+
Sbjct: 25 ELHKAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDAS 84
Query: 214 RAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
+A+ LN KP +RIM++ + P
Sbjct: 85 KALACLNHTKLMGKP---------------MRIMWSHRDP 109
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 121/212 (57%), Gaps = 10/212 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ T L +IF ++G I S+ V+ DGKS+ +GFV + + A ++E L
Sbjct: 211 YVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNG 270
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
T + E Y G+ Q+ S + +K + +E +DK NLYVKN++D + +
Sbjct: 271 KTFDEKEWYV-----GKAQKK-SEREVELKGQFEQTLKETVDKFEGLNLYVKNLDDSITD 324
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS+ G I+S K+MR G+SKG GFV +S +EA++A+ +NG + KPLYVA
Sbjct: 325 DKLKELFSEFGTITSCKVMRDPNGVSKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYVA 384
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHP 264
+AQ K ER + L+ +++ P +A P P
Sbjct: 385 LAQRKEERRARLQAQFSQMRPAMAPAVGPRMP 416
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 103/193 (53%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL IDN LH FS FG+I S KV G+S GYGFVQ+ +ESA NAI+KL
Sbjct: 120 YIKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLNG 179
Query: 117 ATVEGMELY-APSLRAGRIQ---ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR + + FNN+YVKNL + TEE
Sbjct: 180 MLLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEE----------------- 222
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F + G I+S +MR G S+ FGFV F NPD+A R++ LNG F +K YV
Sbjct: 223 -DLKKIFGEYGAITSAVVMRDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYVG 281
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 282 KAQKKSEREVELK 294
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 21/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + +L+ +F++ G I S +V +S GYG+V Y+ A A+E L
Sbjct: 32 YVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQALEVLN 91
Query: 116 AATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
V G + S R I++S + N+Y+KN++ +D
Sbjct: 92 FTPVNGKPIRIMYSYRDPTIRKSGA-------------------GNIYIKNLDKAIDNKA 132
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S K+ + G S G+GFV F N + A AI+ LNG+L + K +YV
Sbjct: 133 LHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPF 192
Query: 235 QTKRERTS 242
++ER S
Sbjct: 193 LRRQERES 200
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 18/101 (17%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEA 212
+ + +LYV ++ +V E +L F+Q G I S+++ R T+R S G+G+V ++N +A
Sbjct: 25 QFVSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSR-RSLGYGYVNYNNVHDA 83
Query: 213 NRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
+A+ LN + KP +RIMY+ + P
Sbjct: 84 AQALEVLNFTPVNGKP---------------IRIMYSYRDP 109
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 120/200 (60%), Gaps = 9/200 (4%)
Query: 51 TPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALN 109
TP F V NL I +L + F KFG I S+ V+ Q G S+ +GFV + E+A +
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNI 166
A+EK+ G+ L L GR Q+ + + + + E+ NLY+KN+
Sbjct: 285 AVEKM-----NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
+D VD+ +LK+ FS+ G ++S K+M +G+S+GFGFV +SNP+EA RA++ +NG + +
Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGR 399
Query: 227 KPLYVAIAQTKRERTSYLRI 246
KPLY+A+AQ K +R ++L+I
Sbjct: 400 KPLYIALAQRKEDRRAHLQI 419
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 103/195 (52%), Gaps = 12/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L + FS FG I S KV + G+SKGYGFVQ+ +ESA AI+KL
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ R QE A D+ T N+YVKN+ ++ E EL+
Sbjct: 199 MLMNDKQVFVGHFI--RRQERAR----------DENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G+ISS +MR G S+ FGFV F + A A+ +NGI LYV AQ
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 237 KRERTSYLRIMYAKQ 251
K ER LR + ++
Sbjct: 307 KSEREEELRRKFEQE 321
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ +L + L +F ++ S +V Q+ +S GY ++ +S A A+E L
Sbjct: 52 YAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN- 110
Query: 117 ATVEGMELYAPSL-RAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIE 174
Y P R RI S + D + + K N+++KN++ +D
Sbjct: 111 --------YTPLFDRPIRIMLS-----------NRDPSTRLSGKGNIFIKNLDASIDNKA 151
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K ++V
Sbjct: 152 LFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHF 211
Query: 235 QTKRER 240
++ER
Sbjct: 212 IRRQER 217
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+ +LY +++ V E L F + SV++ R S G+ ++ FSNP++A RA+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAME 107
Query: 218 TLNGILFHQKPLYVAIA 234
LN +P+ + ++
Sbjct: 108 ALNYTPLFDRPIRIMLS 124
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 93/268 (34%), Positives = 136/268 (50%), Gaps = 46/268 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + + +L + F +FG I S+ V+ DGKSK +GFV + + + A A+E L
Sbjct: 216 FVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNG 275
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
++ E Y G+ Q+ S + L +K + +E DK NLYVKN++D +
Sbjct: 276 KKIDDKEWYV-----GKAQKKSEREHELKIKF--EQSMKEAADKYQGANLYVKNLDDSIA 328
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ +LK+ FS G I+S K+MR G+S+G GFV FS P+EA+RA+ +NG + KPLYV
Sbjct: 329 DEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYV 388
Query: 232 AIAQTKRERTSYLRI-------------------MYAKQGPGLASTNF---------PVH 263
+AQ K +R + L+ MY GPG+ F P
Sbjct: 389 TLAQRKEDRRARLQAQFAQMRPVSMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAIIPSQ 448
Query: 264 PTL-YQRALQVYQAPGFRHGGM-IPNGF 289
P YQ+ L PG R GG +PN F
Sbjct: 449 PGFGYQQQL----VPGMRPGGAPVPNFF 472
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 106/198 (53%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV V G+SKGYGFVQ+ T+E+A AIEKL
Sbjct: 125 FIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNG 184
Query: 117 ATVEGMELY-APSLRAGRIQ---ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR + + A FNN++VKNL + T++
Sbjct: 185 MLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDD----------------- 227
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
ELK+ F + G I+S +MR G SK FGFV F + D+A RA+ LNG K YV
Sbjct: 228 -ELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVG 286
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER L+I + +
Sbjct: 287 KAQKKSEREHELKIKFEQ 304
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L+ +F++ G + S +V +S GYG+V YS + A A++ L
Sbjct: 37 YVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLN 96
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ R RI S D + N+++KN++ +D L
Sbjct: 97 FTPLNN--------RPIRIMYSHR----------DPSIRKSGQGNIFIKNLDKAIDHKAL 138
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKG+GFV F + A +AI LNG+L + K +YV
Sbjct: 139 HDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFL 198
Query: 236 TKRERTS 242
K+ER S
Sbjct: 199 RKQERES 205
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V + +L F+Q G + SV++ R T R + G+G+V +SNP +A RA+
Sbjct: 35 SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSL--GYGYVNYSNPQDAARAL 92
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+ LN + +P +RIMY+ + P +
Sbjct: 93 DVLNFTPLNNRP---------------IRIMYSHRDPSI 116
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 108/195 (55%), Gaps = 3/195 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + N +L + FS FG S KV+ G+SKG+GFV + + A A+E +
Sbjct: 194 YIKNFGEEMSNERLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G LY RA + E S + + + NLYVKN++D +D+ L+
Sbjct: 254 KEINGRMLYV--GRAQKRMERQSELKRKFEQIKQERVSRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQ 251
K ER + L Y ++
Sbjct: 371 KEERKAILTNQYMQR 385
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 25/195 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G S+GYGFV + T E+A AI +
Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAANRAIATMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESA------SFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ + ++ R +E+ F N+Y+KN ++++ E
Sbjct: 161 MLLNDRKVFVGNFKSRREREAEYGAKAMEFTNVYIKNFGEEMSNE--------------- 205
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
L++ FS G SVK+M N G SKGFGFV F +A +A+ +NG + + LY
Sbjct: 206 ---RLQETFSIFGKTLSVKVMTDNIGRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLY 262
Query: 231 VAIAQTKRERTSYLR 245
V AQ + ER S L+
Sbjct: 263 VGRAQKRMERQSELK 277
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S L + N+++KN++D +D L
Sbjct: 74 FEVIKG--------RPIRIMWSQRDPGLRKSGVG----------NIFIKNLDDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+G+GFV F + ANRAI T+NG+L + + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFK 174
Query: 236 TKRERTS 242
++RER +
Sbjct: 175 SRREREA 181
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGPIMSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 111/198 (56%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + ++F +FG++ S+ + + G+S+G+GFV + T E A A+E L+
Sbjct: 232 YVKNLDPEVTQDDFVKLFEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLHD 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ G +L+ R Q+ A K+ + E++ NLY+KN+ DD+D+
Sbjct: 292 SEYHGRKLFV-----SRAQKKAEREEELRKSYEQAKVEKMSKYQGVNLYIKNLEDDIDDE 346
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+Q F G I+S K+MR +G SKGFGFVCFS+PDEA +A+ +N + KPLYV++
Sbjct: 347 RLRQEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSL 406
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 407 AQRREVRRQQLESQIAQR 424
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 107/204 (52%), Gaps = 28/204 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG++ S KV + G+SKGYGFV Y T E+A AI+ +
Sbjct: 135 FIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNG 194
Query: 117 ATVEGMELY---------APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
+ ++Y + R +++E A F N+YVKNLD +VT++
Sbjct: 195 MLLNDKKVYVGHHISRKASSRERQSKLEEMKAQFTNIYVKNLDPEVTQD----------- 243
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
D ++L F Q G ++S I +G S+GFGFV F +EA +A+ TL+ +H
Sbjct: 244 ----DFVKL---FEQFGNVTSAVIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSEYHG 296
Query: 227 KPLYVAIAQTKRERTSYLRIMYAK 250
+ L+V+ AQ K ER LR Y +
Sbjct: 297 RKLFVSRAQKKAEREEELRKSYEQ 320
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 27/207 (13%)
Query: 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESA 107
TP+ + L T+ L +IF+ G + S + V +D +S GY +V Y
Sbjct: 41 TPSASLYVGELDPTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADG 98
Query: 108 LNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
A+E+L + ++G RA RI S D + N+++KN++
Sbjct: 99 ERALEQLNYSLIKG--------RACRIMWSQR----------DPALRKTGQGNIFIKNLD 140
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
+ +D L F+ G + S K+ G SKG+GFV + + A AI +NG+L + K
Sbjct: 141 EQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDK 200
Query: 228 PLYV----AIAQTKRERTSYLRIMYAK 250
+YV + + RER S L M A+
Sbjct: 201 KVYVGHHISRKASSRERQSKLEEMKAQ 227
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 132/267 (49%), Gaps = 44/267 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + + +L +F +FG I S+ V+ DGKSK +GFV + + A A+E L
Sbjct: 210 FVKNLSESTTDDELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNG 269
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ + N + + + +E DK NLYVKN++D + +
Sbjct: 270 KKFDDKEWYV-----GKAQKKSERENELKQRFEQSM-KEAADKYQGANLYVKNLDDSLGD 323
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS G I+S K+MR GIS+G GFV FS PDEA+RA+ +NG + KPLYV
Sbjct: 324 DKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALLEMNGKMVVSKPLYVT 383
Query: 233 IAQTKRERTSYLRI-------------------MYAKQGPGLASTNF---------PVHP 264
+AQ K +R + L+ MY GPG+ F P P
Sbjct: 384 LAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYAQGPPAIIPSQP 443
Query: 265 TL-YQRALQVYQAPGFRHGGM-IPNGF 289
YQ+ L PG R G +PN F
Sbjct: 444 GFGYQQQL----VPGMRPGAAPVPNFF 466
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 102/193 (52%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV G+SKGYGFVQ+ +ESA AIEKL
Sbjct: 119 FIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNG 178
Query: 117 ATVEGMELY-APSLRAGRIQ---ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR + + A FNN++VKNL + T++
Sbjct: 179 MLLNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDD----------------- 221
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
ELK F + G I+S +MR G SK FGFV F N D+A RA+ LNG F K YV
Sbjct: 222 -ELKNVFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVG 280
Query: 233 IAQTKRERTSYLR 245
AQ K ER + L+
Sbjct: 281 KAQKKSERENELK 293
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L+ +F++ G + S +V +S GYG+V +S + A A++ L
Sbjct: 31 YVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVLN 90
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ R RI S D + N+++KN++ +D L
Sbjct: 91 FTPLNN--------RPIRIMYSHR----------DPSIRKSGQGNIFIKNLDRAIDHKAL 132
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV F N + A +AI LNG+L + K +YV
Sbjct: 133 HDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFL 192
Query: 236 TKRERTS 242
K+ER S
Sbjct: 193 RKQERES 199
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 18/103 (17%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEA 212
+ + +LYV +++ +V + +L F+Q G + SV++ R T+R S G+G+V FSNP +A
Sbjct: 24 QFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSR-RSLGYGYVNFSNPQDA 82
Query: 213 NRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
RA++ LN + +P +RIMY+ + P +
Sbjct: 83 ARALDVLNFTPLNNRP---------------IRIMYSHRDPSI 110
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 106/193 (54%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG I S KV + G+SKGYGFVQ+ +ESAL AIEKL
Sbjct: 42 FIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNG 101
Query: 117 ATVEGMELY-APSLRAGR---IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR + + + FNN++VKNL + TEE L+K
Sbjct: 102 MLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNK------------- 148
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
FS+ G ++S+ +MR G S+ FGFV F N D+A RA++TLNG L K YV
Sbjct: 149 -----AFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVG 203
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 204 KAQKKSEREVELK 216
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 122/216 (56%), Gaps = 14/216 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ T L++ FS+FG + S V+ DGKS+ +GFV + + A A++ L
Sbjct: 133 FVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNG 192
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V+ E Y G+ Q+ S + +K+ + +E DK NLY+KN++D + +
Sbjct: 193 KLVDDKEWYV-----GKAQKK-SEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGD 246
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F+ G I+S K+MR GIS+G GFV FS PDEA+RA+ +NG + KPLYVA
Sbjct: 247 DKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVA 306
Query: 233 IAQTKRERTSYLRIMYAK----QGPGLASTNFPVHP 264
+AQ K +R + L+ +++ P + P++P
Sbjct: 307 LAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYP 342
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K+ + G SKG+GFV F N + A +AI L
Sbjct: 40 NIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKL 99
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L + K +YV K+ER
Sbjct: 100 NGMLLNDKQVYVGPFLRKQER 120
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 115/192 (59%), Gaps = 9/192 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + FS+FG + + ++ +GKS+G+GFV + + + A A+E L
Sbjct: 210 YVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNG 269
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
A + +L+ GR Q+ A L +K+ + V I + NLYVKN++ VD+
Sbjct: 270 AMLGSKKLFV-----GRAQKKAERQEL-LKHEKEMVNCNIGKEKASNLYVKNLDASVDDD 323
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+++FS CG I+S K+MR + G+SKGFGFVCFS +EA +A+ TLNG L H + LY+A+
Sbjct: 324 KLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAM 383
Query: 234 AQTKRERTSYLR 245
AQ K +R LR
Sbjct: 384 AQRKEDRQRVLR 395
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 17/190 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I++ L IF KFG+I S KV ++GKSK +GFVQ+ + +SA A+ L
Sbjct: 120 FVKNLDPSINSASLQDIFCKFGNILSCKVA-EENGKSKCFGFVQFDSDDSATAALNALND 178
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLD-DDVTEEILDKNLYVKNINDDVDEIEL 175
++G +L+ +VK + + +EE N+YVKN+ +D+ E +
Sbjct: 179 TMLDGKKLFVSK---------------FVKKCERKEASEETKFTNVYVKNLGEDLTEDII 223
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS+ G + +V IM+ G S+GFGFV F +PDEA +A+ LNG + K L+V AQ
Sbjct: 224 RDKFSEFGKVGTVVIMKDGNGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQ 283
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 284 KKAERQELLK 293
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L + +L +FS G + S ++ S GKS Y +V + A A+ L
Sbjct: 35 DLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKALACLNHTK 94
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+ G + RI S D + + NL+VKN++ ++ L+
Sbjct: 95 LMGKPM--------RIMWSHR----------DPLPRKTGLANLFVKNLDPSINSASLQDI 136
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
F + G I S K+ N G SK FGFV F + D A A+N LN + K L+V+ K
Sbjct: 137 FCKFGNILSCKVAEEN-GKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKC 195
Query: 239 ER 240
ER
Sbjct: 196 ER 197
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 16/100 (16%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEAN 213
E+ LYV +++ +V E+EL FS G + SV++ R + G S + +V F +P +A+
Sbjct: 25 ELHKAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDAS 84
Query: 214 RAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
+A+ LN KP +RIM++ + P
Sbjct: 85 KALACLNHTKLMGKP---------------MRIMWSHRDP 109
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 122/220 (55%), Gaps = 9/220 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N + L+ +F K+G I S+ V+ +G SKG+GFV + + E+A A++ ++
Sbjct: 198 FIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAVHN 257
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
+ V G ++Y GR Q+ + ++ ++ E + NLY+KN+ D + E
Sbjct: 258 SIVNGRQVYC-----GRAQKKNERSRELMRRKEEQRQERLSRYQGVNLYIKNLEDTLGEE 312
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK FS+ G I+S KIM G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 313 KLKSEFSKFGSITSAKIMTDEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVAL 372
Query: 234 AQTKRERTSYLRIMYAKQ-GPGLASTNFPVHPTLYQRALQ 272
AQ K ER ++L ++ G+ ++P Y +Q
Sbjct: 373 AQRKEERQAHLAAQRMQRIARGIPQGQMQMYPPYYMPGIQ 412
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 17/190 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ L+ FS FG+I S KV + SKG+GFV + QE+A AIEK+
Sbjct: 106 FIKNLDKSIDHKALYDTFSAFGNILSCKVATDGNRHSKGFGFVHFDEQEAADLAIEKVNG 165
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ M++Y R R + FN Y N+++KN +D +
Sbjct: 166 KLLNDMKVYVGKFIPRKDR-SHTNGFNQHYT--------------NVFIKNFGEDFTDTM 210
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L F + G I S +M+ G+SKGFGFV F + + A+ A+ ++ + + + +Y A
Sbjct: 211 LYDVFEKYGSIVSAVVMKDGEGLSKGFGFVSFESHEAASAAVQAVHNSIVNGRQVYCGRA 270
Query: 235 QTKRERTSYL 244
Q K ER+ L
Sbjct: 271 QKKNERSREL 280
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 23/195 (11%)
Query: 52 PTFIP----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQES 106
P+F P + +L ++ L + FSK G + S +V +S GY +V +
Sbjct: 9 PSFPPLQSLYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPAD 68
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
A A++ + ++G RI S +L + N+++KN+
Sbjct: 69 AERALDTMNYEPIKGQPC--------RIMWSQRDPSLRRSGVG----------NIFIKNL 110
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
+ +D L FS G I S K+ SKGFGFV F + A+ AI +NG L +
Sbjct: 111 DKSIDHKALYDTFSAFGNILSCKVATDGNRHSKGFGFVHFDEQEAADLAIEKVNGKLLND 170
Query: 227 KPLYVAIAQTKRERT 241
+YV +++R+
Sbjct: 171 MKVYVGKFIPRKDRS 185
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 119/214 (55%), Gaps = 8/214 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + + ++ +F++ G + S ++ +GKSKG+GF+ + E A +A++ L
Sbjct: 222 FVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNG 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V ELY GR Q+ A + ++ +E I NLYVKN++DD+D+
Sbjct: 282 KDVNCKELYV-----GRAQKKAEREAMLRAKFEELRSERIAKYQGMNLYVKNLHDDIDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ FSQ G I+S K+M + G S+GFGFVC+++P+EA RA+ +NG + KP+YVA+
Sbjct: 337 TLRTEFSQFGTITSAKVMVDSAGKSRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVAL 396
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLY 267
AQ + R + L Y ++ P+ P ++
Sbjct: 397 AQRRDVRRAQLEQQYQQRVAMPPGPRGPMAPGMF 430
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 110/197 (55%), Gaps = 21/197 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++DN LH FS FG+I S KV G+SKGYGFV + ESA AIEK+
Sbjct: 132 FIKNLDRSVDNKALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNG 191
Query: 117 ATVEGMELY-APSLR-AGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+EG ++Y P LR + R +S F N++VKNLD+ V+++
Sbjct: 192 MLLEGKKVYVGPFLRRSERSSDSEVKFTNVFVKNLDEAVSDD------------------ 233
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E+K F++ G ++S IMR + G SKGFGF+ F P++A A+ LNG + K LYV
Sbjct: 234 EVKAMFAEHGTVNSCIIMRDDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGR 293
Query: 234 AQTKRERTSYLRIMYAK 250
AQ K ER + LR + +
Sbjct: 294 AQKKAEREAMLRAKFEE 310
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 26/192 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYST---QESALNA 110
+ +L + +L ++FS+ G + S + V +D +S GY +V Y++ +A A
Sbjct: 41 YVGDLDRDVTEAQLFEVFSQIGPVAS--IRVCRDAVTRRSLGYAYVNYNSVLDPAAAERA 98
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+++L + G R RI S D + N+++KN++ V
Sbjct: 99 LDQLNYTPLVG--------RPMRIMWSHR----------DPAFRKSGVGNIFIKNLDRSV 140
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D L FS G I S K+ + +G SKG+GFV F + A AI +NG+L K +Y
Sbjct: 141 DNKALHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVY 200
Query: 231 VAIAQTKRERTS 242
V + ER+S
Sbjct: 201 VGPFLRRSERSS 212
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFS---NPDEAN 213
+LYV +++ DV E +L + FSQ G ++S+++ R T R + G+ +V ++ +P A
Sbjct: 39 SLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSL--GYAYVNYNSVLDPAAAE 96
Query: 214 RAINTLNGILFHQKPLYV 231
RA++ LN +P+ +
Sbjct: 97 RALDQLNYTPLVGRPMRI 114
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 7/197 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL T + L +F+ G I S+ V+ +GKSK +GFV + +SA A+EKL
Sbjct: 216 YVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKL-D 274
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDEI 173
TV G + +L GR Q A + + E++ NLY+KN++D +D+
Sbjct: 275 GTVLGDD---KTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQGANLYIKNLDDHIDDE 331
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK+ FS+ G I+S K+M G+SKG GFV FS+PDEA +A+N +NG + +KPLYVA+
Sbjct: 332 KLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAV 391
Query: 234 AQTKRERTSYLRIMYAK 250
AQ K ER + L+ +A+
Sbjct: 392 AQRKEERKARLQAQFAQ 408
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L F+ FG + S KV V +G+SKGYGFVQ+ ++ESA +IEKL
Sbjct: 126 FIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNG 185
Query: 117 ATVEGMELYAPSL--RAGRIQESAS-FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++Y RI+ + S F N+YVKNL + T++
Sbjct: 186 MLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDD------------------ 227
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG-ILFHQKPLYVA 232
+LK F+ G I+S +M + G SK FGFV F N D A A+ L+G +L K LYV
Sbjct: 228 DLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVG 287
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER + LR + ++
Sbjct: 288 RAQRKAEREAELRAKFEQE 306
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L +++ +L ++F + + S +V Q + S GY +V +S+ + A+NA+E L
Sbjct: 38 YVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLN 97
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G + + + N D + + N+++KN++ +D L
Sbjct: 98 FTPVNGKPI-----------------RIMISNRDPSIRKSGY-ANVFIKNLDLSIDNKAL 139
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F+ G + S K+ + G SKG+GFV F + + A +I LNG+L + K +YV
Sbjct: 140 RDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFI 199
Query: 236 TKRER 240
+ER
Sbjct: 200 RHQER 204
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANR 214
L +LYV +++ V+E +L + F Q + S+++ R R S G+ +V FS+ +A
Sbjct: 32 FLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVN 91
Query: 215 AINTLNGILFHQKPLYVAIA 234
A+ LN + KP+ + I+
Sbjct: 92 AMEHLNFTPVNGKPIRIMIS 111
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 155/350 (44%), Gaps = 83/350 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ ++ +F +G I S + +GKSKG+GFV + + E+A+ A+E+L
Sbjct: 234 YVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELND 293
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-------NLYVKNINDD 169
+ G LY GR Q+ ++ L L+K NL+VKN++D
Sbjct: 294 KDINGQNLYV-----GRAQKKRE----RIEELKRQYETARLEKLSKYQGVNLFVKNLDDS 344
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D ++L++ F G I+S ++M G SKGFGFVCFS+P+EA +AI +N +FH KPL
Sbjct: 345 IDSVKLEEEFKPFGTITSARVMVDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPL 404
Query: 230 YVAIAQTKRERTSYL----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF 279
YVA+AQ K R S L R+ A G+ P P Y Q PGF
Sbjct: 405 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIP--PMFYG------QQPGF 456
Query: 280 RHGGMIPNGFSSPP---PSPLFLTRAGQ------------------------------AA 306
PNG S P P+P + GQ AA
Sbjct: 457 ----FPPNGRGSAPFPGPNPQMMVPRGQIPPPQGQWPRAGPNGQPVPVYGIPPVYGDFAA 512
Query: 307 ANNLTN---------GNQRAAANN---SMLAVASPDERKDILGQGLYPLV 344
AN NQ+ ++LA A D++K ILG+ LYP +
Sbjct: 513 ANGGRQQRGYYPNRGQNQKGRPQKDLAALLASAPVDQQKRILGEELYPKI 562
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV + G SK +GFV Y T E+A AIE +
Sbjct: 141 FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAIENVNG 200
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ E+Y + + +ES A+F N+YVKN+D +EE
Sbjct: 201 MLLNDREVYVGKHVSKKDRESKFEEMKANFTNVYVKNIDLGFSEE--------------- 245
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E++ F G I+S+ + + G SKGFGFV F + + A +A+ LN + + LY
Sbjct: 246 ---EMRNLFEPYGKITSLHLEKDAEGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLY 302
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ KRER L+ Y
Sbjct: 303 VGRAQKKRERIEELKRQY 320
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G Q S + V +D KS GY +V + E AI+
Sbjct: 53 YVGELNPSVNEASLFEIFSPVG--QVSSIRVCRDAVTKKSLGYAYVNFHKLEDGEKAIDD 110
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G R RI S +L + N+++KN++ +D
Sbjct: 111 LNYSLIDG--------RPCRIMWSQRDPSLRRNG----------EGNIFIKNLHPAIDNK 152
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ +G SK FGFV + + A AI +NG+L + + +YV
Sbjct: 153 ALHDTFSAFGKILSCKVATDEQGNSKCFGFVHYETAEAARAAIENVNGMLLNDREVYVGK 212
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 213 HVSKKDRESKFEEMKA 228
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDEANRAI 216
+LYV +N V+E L + FS G +SS+++ R ++K G+ +V F ++ +AI
Sbjct: 51 SLYVGELNPSVNEASLFEIFSPVGQVSSIRVCRD--AVTKKSLGYAYVNFHKLEDGEKAI 108
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFP------VHPTLYQRA 270
+ LN L +P RIM++++ P L +HP + +A
Sbjct: 109 DDLNYSLIDGRP---------------CRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKA 153
Query: 271 LQ 272
L
Sbjct: 154 LH 155
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 106/193 (54%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG I S KV + G+SKGYGFVQ+ +ESAL AIEKL
Sbjct: 120 FIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNG 179
Query: 117 ATVEGMELY-APSLRAGR---IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR + + + FNN++VKNL + TEE L+K
Sbjct: 180 MLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNK------------- 226
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
FS+ G ++S+ +MR G S+ FGFV F N D+A RA++TLNG L K YV
Sbjct: 227 -----AFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVG 281
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 282 KAQKKSEREVELK 294
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 122/216 (56%), Gaps = 14/216 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ T L++ FS+FG + S V+ DGKS+ +GFV + + A A++ L
Sbjct: 211 FVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDTLNG 270
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V+ E Y G+ Q+ S + +K+ + +E DK NLY+KN++D + +
Sbjct: 271 KLVDDKEWYV-----GKAQKK-SEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGD 324
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F+ G I+S K+MR GIS+G GFV FS PDEA+RA+ +NG + KPLYVA
Sbjct: 325 DKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVA 384
Query: 233 IAQTKRERTSYLRIMYAK----QGPGLASTNFPVHP 264
+AQ K +R + L+ +++ P + P++P
Sbjct: 385 LAQRKEDRRARLQAQFSQIRSVPMPASVAPRMPIYP 420
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 21/186 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L+ IF++ G + S +V +S GYG+V YS + A A++ L
Sbjct: 32 YVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLN 91
Query: 116 AATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G + S R I++S + N+++KN++ +D
Sbjct: 92 FTPLNGKPIRVMYSHRDPSIRKSGA-------------------GNIFIKNLDKAIDHKA 132
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S K+ + G SKG+GFV F N + A +AI LNG+L + K +YV
Sbjct: 133 LHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPF 192
Query: 235 QTKRER 240
K+ER
Sbjct: 193 LRKQER 198
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V + +L F+Q G + SV++ R T R S G+G+V +SNP +A RA+
Sbjct: 30 SLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRR--SLGYGYVNYSNPQDAARAL 87
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+ LN + KP +R+MY+ + P +
Sbjct: 88 DVLNFTPLNGKP---------------IRVMYSHRDPSI 111
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 7/197 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL T + L +F+ G I S+ V+ +GKSK +GFV + +SA A+EKL
Sbjct: 216 YVKNLPETTTDDDLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKL-D 274
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDEI 173
TV G + +L GR Q A + + E++ NLY+KN++D +D+
Sbjct: 275 GTVLGDD---KTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDE 331
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK+ FS+ G I+S K+M G+SKG GFV FS+PDEA +A+N +NG + +KPLYVA+
Sbjct: 332 KLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAV 391
Query: 234 AQTKRERTSYLRIMYAK 250
AQ K ER + L+ +A+
Sbjct: 392 AQRKEERKARLQAQFAQ 408
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 105/199 (52%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L F+ FG + S KV V +G+SKGYGFVQ+ ++ESA +IEKL
Sbjct: 126 FIKNLDLSIDNKALRDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNG 185
Query: 117 ATVEGMELYAPSL--RAGRIQESAS-FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++Y RI+ + S F N+YVKNL + T++
Sbjct: 186 MLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDD------------------ 227
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG-ILFHQKPLYVA 232
+LK F+ G I+S +M + G SK FGFV F N D A A+ L+G +L K LYV
Sbjct: 228 DLKNLFAPHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVG 287
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER + L+ + ++
Sbjct: 288 RAQRKAEREAELKAKFEQE 306
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L +++ +L ++F + + S +V Q + S GY +V +S+ + A+NA+E L
Sbjct: 38 YVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLN 97
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G + + + N D + + N+++KN++ +D L
Sbjct: 98 FTPVNGKPI-----------------RIMISNRDPSIRKSGY-ANVFIKNLDLSIDNKAL 139
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F+ G + S K+ + G SKG+GFV F + + A +I LNG+L + K +YV
Sbjct: 140 RDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFI 199
Query: 236 TKRER 240
+ER
Sbjct: 200 RHQER 204
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANR 214
L +LYV +++ V+E +L + F Q + S+++ R R S G+ +V FS+ +A
Sbjct: 32 FLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVN 91
Query: 215 AINTLNGILFHQKPLYVAIA 234
A+ LN + KP+ + I+
Sbjct: 92 AMEHLNFTPVNGKPIRIMIS 111
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 108/200 (54%), Gaps = 3/200 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ +DGKSKG+GFV + T E+A A++ L
Sbjct: 184 YVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNG 243
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ EG LY RA + E + L E + NLYVKN++D +D+ L
Sbjct: 244 KDMGEGKSLYV--ARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 301
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I+S K+M G SKGFGFVCF+ EA A+ LNG + KPLYVA+AQ
Sbjct: 302 RIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQ 361
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K ER + L Y + G+
Sbjct: 362 RKEERKADLASQYMRHMTGM 381
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 99/190 (52%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 93 FIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNG 152
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y + QE L+ N+YVKN +D D+ +LK
Sbjct: 153 MLLNGKKVYVGKFIPRKEQELGEKAKLFT--------------NVYVKNFTEDFDDEKLK 198
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIAQ 235
++F G I+S K+M G SKGFGFV F + A A+ LNG + K LYVA AQ
Sbjct: 199 EFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQ 258
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 259 KKAERQQELK 268
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 220 NGILFHQKPLYVA 232
NG+L + K +YV
Sbjct: 151 NGMLLNGKKVYVG 163
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ DV+E L FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLVRNKP---------------IRIMWSQRDPSL 84
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 106/190 (55%), Gaps = 16/190 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ LH+ FS FG I S KV V G+SKGYGFVQY T E+A AI+KL
Sbjct: 130 FIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNG 189
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT-EEILDKNLYVKNINDDVDEIEL 175
+ ++Y +V L D + E++ N+YVKN+++ + + EL
Sbjct: 190 MLLNDKQVYV---------------GPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEEL 234
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F + G+ +S IMR G SKGFGFV F N D+A RA++ LNG F K +V AQ
Sbjct: 235 NKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQ 294
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 295 KKSERETELK 304
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 137/249 (55%), Gaps = 20/249 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ ++ + +L+++F +FG S ++ +GKSKG+GFV + + A A++ L
Sbjct: 221 YVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 280
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
T + E + G+ Q+ + + + + +E DK NLYVKN+++ V +
Sbjct: 281 KTFDDKEWFV-----GKAQKKSERETELKQKFEQSL-KEAADKSQGSNLYVKNLDESVTD 334
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L+++F+ G I+S K+MR G+S+G GFV FS P+EA+RAI +NG + KPLYVA
Sbjct: 335 DKLREHFAPFGTITSCKVMRDPTGVSRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVA 394
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
+AQ K +R + L+ +++ P N P P + R +Q+Y G G + G P
Sbjct: 395 LAQRKEDRKARLQAQFSQMRP----VNMP--PAVGPR-MQMYPPGGPPMGQQLFYGQGPP 447
Query: 293 ---PPSPLF 298
PP P F
Sbjct: 448 AMIPPQPGF 456
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L +T+ + +L + FS+ G + S +V + S GYG+V Y+T + A A+ +L
Sbjct: 42 YVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN 101
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G RA R+ S +L + N+++KN++ +D L
Sbjct: 102 FMALNG--------RAIRVMYSVRDPSLRKSGVG----------NIFIKNLDKSIDHKAL 143
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S K+ G SKG+GFV + + A RAI+ LNG+L + K +YV
Sbjct: 144 HETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFV 203
Query: 236 TKRER 240
K +R
Sbjct: 204 HKLQR 208
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ V + +L + FSQ G + SV++ R T R + G+G+V ++ P +A+RA+
Sbjct: 40 SLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSL--GYGYVNYATPQDASRAL 97
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
N LN + + + +R+MY+ + P L
Sbjct: 98 NELNFMALNGR---------------AIRVMYSVRDPSL 121
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 108/199 (54%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN LH FS FG I S KV V G+SKGYGFVQ+ +ESAL AIEK+
Sbjct: 119 FIKNLDKTIDNKALHDTFSAFGGILSCKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNG 178
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ P +R +S + FNN+YVKNL ++ TE+
Sbjct: 179 MLLNDKQVFVGPFVRRQERDQSGGVSKFNNVYVKNLGENTTED----------------- 221
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F G ISS +MR + G SK FGFV F +PD A +A+ LNG +K YV
Sbjct: 222 -DLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALNGKKRDEKEWYVG 280
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER + LR + ++
Sbjct: 281 RAQKKSEREAELRAKFEQE 299
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 129/265 (48%), Gaps = 33/265 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL L +F +G I S+ V+ DGKSK +GFV + ++A A+E L
Sbjct: 210 YVKNLGENTTEDDLKNVFGAYGTISSAVVMRDSDGKSKCFGFVNFEHPDNAAKAVEALNG 269
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ E Y GR Q+ + + + E I NLY+KN++D VD+
Sbjct: 270 KKRDEKEWYV-----GRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDE 324
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+MR +G S+G GFV FS+P+EA RA+ +NG + KPLYVA+
Sbjct: 325 KLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVAL 384
Query: 234 AQTKRERTSYLRIMYAKQ-----------------GPGLAST-----NFPVHPTLYQRAL 271
AQ K ER + L+ +A+ GPG++ P P Q A
Sbjct: 385 AQRKEERRARLQAAFAQMRTSVSPAVPTSLPMYHPGPGMSPQMPYYGQHPSGPIPLQPAA 444
Query: 272 QVYQAPGFRHGG-MIPN--GFSSPP 293
YQ R GG PN G+++ P
Sbjct: 445 FGYQPQIIRPGGAQFPNYIGYANVP 469
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 25/188 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + +L+++F++ G + S +V ++++ +S GY +V Y++ + A A+E
Sbjct: 31 YVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITR--RSLGYAYVNYNSAQDATRALEL 88
Query: 114 LYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
L + + G + S R I++S + N+++KN++ +D
Sbjct: 89 LNFSVLNGNPIRIMFSHRDPSIRKSGT-------------------ANIFIKNLDKTIDN 129
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L FS G I S K+ G SKG+GFV F + A AI +NG+L + K ++V
Sbjct: 130 KALHDTFSAFGGILSCKVAVDGSGQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVG 189
Query: 233 IAQTKRER 240
++ER
Sbjct: 190 PFVRRQER 197
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ +V E +L + F+Q G + S+++ R T R + G+ +V +++ +A RA+
Sbjct: 29 SLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSL--GYAYVNYNSAQDATRAL 86
Query: 217 NTLNGILFHQKPLYV 231
LN + + P+ +
Sbjct: 87 ELLNFSVLNGNPIRI 101
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A +
Sbjct: 162 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQXXXXXMNG 221
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 222 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 279
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 280 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 338
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 339 KEERQAHLTNQYMQRMASVRAVPNPV 364
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 12/153 (7%)
Query: 93 SKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDV 152
SKGYGFV + TQE+A AIEK+ + +++ ++ + +E+ L
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA---------ELGARA 155
Query: 153 TEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEA 212
E N+Y+KN +D+D+ LK F + G SVK+M G SKGFGFV F ++A
Sbjct: 156 KEFT---NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 212
Query: 213 NRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
+NG + K +YV AQ K ER + L+
Sbjct: 213 QXXXXXMNGKELNGKQIYVGRAQKKVERQTELK 245
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------VRIMWSQRDPSL 93
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 106/190 (55%), Gaps = 16/190 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ LH+ FS FG I S KV V G+SKGYGFVQY T E+A AI+KL
Sbjct: 136 FIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT-EEILDKNLYVKNINDDVDEIEL 175
+ ++Y +V L D + E++ N+YVKN+++ + + EL
Sbjct: 196 MLLNDKQVYV---------------GPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEEL 240
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F + G+ +S IMR G SKGFGFV F N D+A RA++ LNG F K +V AQ
Sbjct: 241 NKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQ 300
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 301 KKSERETELK 310
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 135/248 (54%), Gaps = 19/248 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ ++ + +L+++F +FG S ++ +GKSKG+GFV + + A A++ L
Sbjct: 227 YVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
T + E + G+ Q+ + + + + +E DK NLYVKN+++ V +
Sbjct: 287 KTFDDKEWFV-----GKAQKKSERETELKQKFEQSL-KEAADKSQGSNLYVKNLDESVTD 340
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L+++F+ G I+S K+MR G+S+G GFV FS P+EA RAI +NG + KPLYVA
Sbjct: 341 DKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVA 400
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
+AQ K +R + L+ +++ P N P P + R +Q+Y G G + G P
Sbjct: 401 LAQRKEDRKARLQAQFSQMRP----VNMP--PAVGPR-MQMYPPGGPPMGQQLFYGQGPP 453
Query: 293 P--PSPLF 298
P P F
Sbjct: 454 AMIPQPGF 461
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L +T+ + +L + F++ G + S +V + S GYG+V Y+T + A A+ +L
Sbjct: 48 YVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELN 107
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G RA R+ S +L + N+++KN++ +D L
Sbjct: 108 FMALNG--------RAIRVMYSVRDPSLRKSGVG----------NIFIKNLDKSIDHKAL 149
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S K+ G SKG+GFV + + A AI+ LNG+L + K +YV
Sbjct: 150 HETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFV 209
Query: 236 TKRER 240
K +R
Sbjct: 210 HKLQR 214
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ V + +L + F+Q G + SV++ R T R + G+G+V ++ P +A+RA+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSL--GYGYVNYATPQDASRAL 103
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
N LN + + + +R+MY+ + P L
Sbjct: 104 NELNFMALNGR---------------AIRVMYSVRDPSL 127
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 118/201 (58%), Gaps = 14/201 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + +L +F K+G I S K++ DGKSKG+GFV + + E+A A+E L
Sbjct: 195 YVKNFGEDLTEEQLRTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNG 254
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ +G LY GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 255 KEIIDGKPLYV-----GRAQKKAE-RQQELKRRFEALKMERLNRYQGVNLYVKNLDDTID 308
Query: 172 EIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ L++ FS G I+S K+M NR SKGFGFVCFS+P+EA +A+ +NG + KPLY
Sbjct: 309 DERLRKEFSPFGTITSAKVMMEDNR--SKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 366
Query: 231 VAIAQTKRERTSYLRIMYAKQ 251
VA+AQ K +R ++L Y ++
Sbjct: 367 VALAQRKEDRKAHLTSQYMQR 387
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV ++G SKGYGFV + T+E+A +IEK
Sbjct: 102 FIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEK--- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L + GR + K + ++ E+ L N+YVKN +D+ E +L
Sbjct: 159 --VNGMLLNGKKVYVGRF--------IPRKEREKELGEKAKLFTNVYVKNFGEDLTEEQL 208
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIA 234
+ F + G I+S KIM + G SKGFGFV F +P+ A A+ LNG + KPLYV A
Sbjct: 209 RTMFEKYGKITSYKIMSKDDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLYVGRA 268
Query: 235 QTKRERTSYLR 245
Q K ER L+
Sbjct: 269 QKKAERQQELK 279
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + I L + FS G + S +V ++++ +S GY +V + A A++
Sbjct: 14 YVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITR--RSLGYAYVNFQQPADAERALDT 71
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++G R RI S +L + N+++KN++ +D
Sbjct: 72 MNFDLIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDRSIDNK 113
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ FS G I S K+ + G SKG+GFV F + AN++I +NG+L + K +YV
Sbjct: 114 AMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGR 173
Query: 234 AQTKRERTSYL 244
++ER L
Sbjct: 174 FIPRKEREKEL 184
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 111/195 (56%), Gaps = 3/195 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + +D L +FS+FG + S KV+ G+S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G LYA S R++ + + + D NLYVKN++D +D+ +L+
Sbjct: 254 KEVSGRLLYA-SRAQKRVERQNELKRKF-EQMKQDRLSRYQGVNLYVKNLDDSIDDDKLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G+I+S K+M T SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPYGVITSAKVM-TEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQ 251
K ER + L Y ++
Sbjct: 371 KEERKAILTNQYMQR 385
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R E A+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRR--ERAA--ELGARALEFT--------NIYVKNLPADVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY + AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVACDKHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRRERAAEL 183
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 111/195 (56%), Gaps = 3/195 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + +D L +FS+FG + S KV+ G+S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G LYA S R++ + + + D NLYVKN++D +D+ +L+
Sbjct: 254 KEVSGRLLYA-SRAQKRVERQNELKRRF-EQMKQDRLSRYQGVNLYVKNLDDSIDDGKLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G+I+S K+M T SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPYGVITSAKVM-TEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQ 251
K ER + L Y ++
Sbjct: 371 KEERKAILTNQYMQR 385
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETYEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R E A+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRR--ERAA--ELGARALEFT--------NIYVKNLPADVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR + G S+ FGFV F +EA +A+ +NG + LY + AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRRERAAEL 183
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R +
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGSILSIRVCRDVATRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 53 -GYAYINFQQPADAERALDTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 134/262 (51%), Gaps = 34/262 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L ++FS++G I S+ V++ DGKS+ +GFV + + + A A+E+L
Sbjct: 304 FVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNG 363
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
+ E Y GR Q+ + + + D ++ +NLY+KN++D + +
Sbjct: 364 KKINDKEWYV-----GRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDD 418
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G I+S KIMR G+SKG GFV FS +EA++A+ +NG + KPLYVA
Sbjct: 419 QLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAF 478
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTN-------FPVHPTLYQR----------------- 269
AQ K ER + L+ +++ P + + +P PTL Q+
Sbjct: 479 AQRKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYPPMPTLGQQLFYGQAPPAMMPPQPGY 538
Query: 270 ALQVYQAPGFRHGG--MIPNGF 289
Q PG R GG +PN F
Sbjct: 539 GFQQQLVPGMRPGGGAHMPNYF 560
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN LH FS FG I S KV + G+SKG+GFVQY +ESA +A++ L
Sbjct: 213 FIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNG 272
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +Y P LR S A FNN++VKNL + T+E
Sbjct: 273 MLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKE----------------- 315
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS+ G I+S +M G S+ FGFV F +PD+A RA+ LNG + K YV
Sbjct: 316 -DLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVG 374
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 375 RAQKKSEREMDLK 387
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 25/193 (12%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNA 110
PT + +L + + + +L+++FS+ G + S +V + + S GY +V YS A A
Sbjct: 120 PTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARA 179
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNL---DDDVTEEILDKNLYVKNIN 167
+E L +AP NN ++ + D + N+++KN++
Sbjct: 180 MEALN---------FAP------------LNNKPIRVMYSNRDPSSRRSGSANIFIKNLD 218
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
+D L FS G I S K+ + G SKGFGFV + + A A+ +LNG+L + K
Sbjct: 219 KTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDK 278
Query: 228 PLYVAIAQTKRER 240
P+YV K+ER
Sbjct: 279 PVYVGPFLRKQER 291
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 19/102 (18%)
Query: 131 AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKI 190
G Q+ +LYV +L+ +VT D LY + FSQ G + SV++
Sbjct: 112 GGAAQQPLPTTSLYVGDLEANVT----DSQLY--------------ELFSQAGQVVSVRV 153
Query: 191 MR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
R N S G+ +V +SNP +A RA+ LN + KP+ V
Sbjct: 154 CRDVNSRRSLGYAYVNYSNPMDAARAMEALNFAPLNNKPIRV 195
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 130/250 (52%), Gaps = 25/250 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA + +L ++F +G I S+ V+ DGKSK +GFV + + A A+E L
Sbjct: 206 YVKNLADVTTDDELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAKAVEALQG 265
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ E Y GR Q+ + + + E I NLY+KN++D VD+
Sbjct: 266 KKFDEKEWYV-----GRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTVDDE 320
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
++++ F++ G I+S K+MR ++G SKG GFV FS+PDEA RA+ +NG + KPLYVA+
Sbjct: 321 KIRELFAEYGTITSCKVMRDHQGQSKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLYVAL 380
Query: 234 AQTKRERTSYLRIMYAKQ----GPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGF 289
AQ K ER L+ +A+ GP + ++ HP APG G + +
Sbjct: 381 AQRKEERRMRLQAAFAQMRTHVGPAVPTSLPMYHPG----------APGM---GPQMSYY 427
Query: 290 SSPPPSPLFL 299
PP P+ L
Sbjct: 428 GQHPPGPIPL 437
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 109/199 (54%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F+ FG+I S KV G+SKGYGFVQ+ +ESA NAIEK+
Sbjct: 115 FIKNLDKSIDNKALHDTFAAFGNILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNG 174
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ P +R ++ + FNN+YVKNL D T++
Sbjct: 175 MLLNDKQVFVGPFVRRQERDQAGGVSKFNNVYVKNLADVTTDD----------------- 217
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
ELK+ F G ISS +MR N G SK FGFV F +PD+A +A+ L G F +K YV
Sbjct: 218 -ELKKVFGAWGPISSAVVMRDNDGKSKCFGFVNFEHPDDAAKAVEALQGKKFDEKEWYVG 276
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER + LR + ++
Sbjct: 277 RAQKKSEREAELRAKFEQE 295
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + +L+++FS+ G + S +V ++++ +S GY +V Y+ + A A+E
Sbjct: 27 YVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITR--RSLGYSYVNYNNAQDATRALEL 84
Query: 114 LYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
L V G + S R I++S + N+++KN++ +D
Sbjct: 85 LNFTGVNGKPIRIMFSHRDPSIRKSGT-------------------ANIFIKNLDKSIDN 125
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L F+ G I S K+ G SKG+GFV F + A AI +NG+L + K ++V
Sbjct: 126 KALHDTFAAFGNILSCKVATDASGQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVG 185
Query: 233 IAQTKRER 240
++ER
Sbjct: 186 PFVRRQER 193
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 20/104 (19%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDE 211
+ + +LYV ++ +V E +L + FSQ G + S+++ R T R + G+ +V ++N +
Sbjct: 20 QFVSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSL--GYSYVNYNNAQD 77
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A RA+ LN + KP +RIM++ + P +
Sbjct: 78 ATRALELLNFTGVNGKP---------------IRIMFSHRDPSI 106
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 118/215 (54%), Gaps = 9/215 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL + FS FG S +V+ + G+S+G+GFV Y+ E A A++++
Sbjct: 194 YIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
+ G +Y GR Q+ + D D + NLYVKN++D +D+
Sbjct: 254 KEMNGKIIYV-----GRAQKRLERQGELKRKFDQLKQDRIQRYQGVNLYVKNLDDSIDDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 RLRKEFSPYGTITSAKVM-TEAGQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQ 268
AQ + ER + L Y ++ L + P+ + +Q
Sbjct: 368 AQRREERKAILTNKYMQRMATLRTMPSPIIDSYHQ 402
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 107/195 (54%), Gaps = 25/195 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ +IDN L+ FS FG+I S KVV + G SKGYGFV + TQE+A AIE +
Sbjct: 102 FIKNIDDSIDNKALYDTFSAFGNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESA------SFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ ++ + +E F N+Y+KN D++T+E
Sbjct: 161 MLLNDRKVFVGHFKSRKEREVEFGTKVMKFTNIYIKNFGDNLTDE--------------- 205
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+LK+ FS G SV++MR +G S+GFGFV +++ ++A +A++ +NG + K +Y
Sbjct: 206 ---KLKEAFSAFGKTLSVRVMRDEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIY 262
Query: 231 VAIAQTKRERTSYLR 245
V AQ + ER L+
Sbjct: 263 VGRAQKRLERQGELK 277
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 24/187 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + L+Q FS G I S +V ++++ +S GY ++ + A A++
Sbjct: 14 YVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITR--RSLGYAYINFQQPADAECALDT 71
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++G R RI S D + N+++KNI+D +D
Sbjct: 72 MNYDVIKG--------RPIRIMWSQR----------DPALRKSGVGNIFIKNIDDSIDNK 113
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K++ RG SKG+GFV F + ANRAI T+NG+L + + ++V
Sbjct: 114 ALYDTFSAFGNILSCKVVCDERG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGH 172
Query: 234 AQTKRER 240
++++ER
Sbjct: 173 FKSRKER 179
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 114/192 (59%), Gaps = 11/192 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 292 YVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMNG 351
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G L+ GR Q+ + +K + + + +E + LY+KN++D +D+
Sbjct: 352 KDVNGQLLFV-----GRAQKKSE-RQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDD 405
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS G IS VKIMR G SKGFG +CFS+P+EA +A+ +NG + KPLY+A
Sbjct: 406 EKLWREFSSFGSISRVKIMREE-GRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIA 464
Query: 233 IAQTKRERTSYL 244
+AQ ER ++L
Sbjct: 465 LAQRPXERKNFL 476
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D S+GY FV + Q +A AIE++
Sbjct: 200 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSRGYAFVHFQNQNAADRAIEEMNG 258
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A ++ L+ + + +E+ L + V E N+YVKN DD+D+ LK
Sbjct: 259 ALLKDCRLFVGRFKNRKDREA---------ELQNKVNEFT---NVYVKNFGDDMDDERLK 306
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + L+V AQ
Sbjct: 307 EVFSKYGKTLSVKVMTDSGGKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQK 366
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 367 KSERQAELKQMF 378
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 26/193 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L++ + L + FS G + S ++ +V++ +S GY +V + A A++
Sbjct: 112 YVGDLSADVTEDLLFKKFSAVGPVLSIRICRDLVTR--RSLGYAYVNFLKLADAQKALDT 169
Query: 114 LYAATVEGMEL-YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++G + S R +++S N+++KNLD + I +K LY
Sbjct: 170 MNFDMIKGKPIRLMWSQRDAYLRKSG-IGNVFIKNLD----KSIDNKTLY---------- 214
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
++FS G I S K+M ++G S+G+ FV F N + A+RAI +NG L L+V
Sbjct: 215 ----EHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVG 269
Query: 233 IAQTKRERTSYLR 245
+ +++R + L+
Sbjct: 270 RFKNRKDREAELQ 282
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 27/107 (25%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE++L K FS G + S++I R T R +
Sbjct: 110 SLYVGDLSADVTEDLLFKK------------------FSAVGPVLSIRICRDLVTRRSL- 150
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G+ +V F +A +A++T+N + KP+ + +Q R +YLR
Sbjct: 151 -GYAYVNFLKLADAQKALDTMNFDMIKGKPIRLMWSQ----RDAYLR 192
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 114/188 (60%), Gaps = 10/188 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + + ++ ++F++ G + S ++ + GKSKG+GF+ + E A A+ L
Sbjct: 216 FVKNLSENLTDEEVEKMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALNG 275
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++G ELY GR Q+ A +K D+V +E + K NLYVKN+ D+VD+
Sbjct: 276 KEIDGKELYC-----GRAQKKAE-REAELKQKFDEVRQERIAKYQGMNLYVKNLVDEVDD 329
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L+ F+ G I+S K+M+ + G SKGFGFVC+S+P+EA RA+ +NG + KP+YVA
Sbjct: 330 DQLRAEFAPHGTITSAKVMKDSAGKSKGFGFVCYSSPEEATRAVTEMNGKMLLGKPMYVA 389
Query: 233 IAQTKRER 240
+AQ + R
Sbjct: 390 LAQRREVR 397
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 103/189 (54%), Gaps = 15/189 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG I S KV G SKGYGFV Y +E+A AIEK+
Sbjct: 126 FIKNLDKDIDNKALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVNG 185
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+EG ++ F ++K + V +E N++VKN+++++ + E++
Sbjct: 186 MLLEGKKV---------------FVGPFLKRTERPVDKEQHYTNVFVKNLSENLTDEEVE 230
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G+++S IM+ G SKGFGF+ F + + A+ A+ LNG K LY AQ
Sbjct: 231 KMFNEHGMVTSFAIMKDEAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKELYCGRAQK 290
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 291 KAEREAELK 299
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ +L + +L +IFS+ G + S + V +D +S GY +V Y++ A A
Sbjct: 27 YVGDLDRDVTEAQLFEIFSQIGPVAS--IRVCRDAVTRRSLGYAYVNYNSALDAAAAERA 84
Query: 114 L----YAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ Y + + G E S + RI S D + N+++KN++ D
Sbjct: 85 IEALNYTSVIPGKEGGEDS-KPMRIMWSHR----------DPAFRKSGVGNIFIKNLDKD 133
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D L F+ G I S K+ G SKG+GFV + + A AI +NG+L K +
Sbjct: 134 IDNKALHDTFTAFGTILSCKVATDLAGNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGKKV 193
Query: 230 YVAIAQTKRER 240
+V + ER
Sbjct: 194 FVGPFLKRTER 204
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 116/199 (58%), Gaps = 11/199 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+G+GFV + E A A+ +
Sbjct: 169 YVKNLQVDVDERGLQDLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNG 228
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ N +K + + ++ L++ NLYVKN++D +++
Sbjct: 229 KEVSGRLLYV-----GRAQKRLERQN-ELKRRFEQMKQDRLNRYQGVNLYVKNLDDSIND 282
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 283 EKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 341
Query: 233 IAQTKRERTSYLRIMYAKQ 251
+AQ K ER + L Y ++
Sbjct: 342 LAQRKEERKAILTNQYMQR 360
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 104/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T ++A AI +
Sbjct: 77 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHDAAQRAISTMNG 135
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L V E N+YVKN+ DVDE L+
Sbjct: 136 MLLNDRKVFVGHFKSRREREA---------ELGARVMEFT---NIYVKNLQVDVDERGLQ 183
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR + G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 184 DLFSQFGKMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGRAQK 243
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 244 RLERQNELK 252
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 3/90 (3%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ D +D L FS G I S K++ G S+GFGFV F D A RAI+T+
Sbjct: 75 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHDAAQRAISTM 133
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL--RIM 247
NG+L + + ++V +++RER + L R+M
Sbjct: 134 NGMLLNDRKVFVGHFKSRREREAELGARVM 163
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 112/200 (56%), Gaps = 3/200 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + + +L ++F FG + S + +DGKSKG+GFV Y T E A A+E+L
Sbjct: 223 FVKNLGDEVTDEELRKVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEELDG 282
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
E + + + + A + + + E++ NLY+KN+ D D+ L+
Sbjct: 283 KHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERM-EKMAGANLYIKNLEDGADDETLR 341
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G I+S ++MR G+S+G FV FS+P+EA RA+ LNG + KPLYVA+AQ
Sbjct: 342 ELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALAQR 401
Query: 237 KRERTSYLRIMYAKQ--GPG 254
K +R L+ +A++ GPG
Sbjct: 402 KEDRRMRLQAQFAQRSMGPG 421
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 102/193 (52%), Gaps = 17/193 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID L F++FG+I S+KV G SKGYGF+Q+ T+ +A AIEK
Sbjct: 134 FIKNLDKDIDTVALRDTFAQFGNIVSAKVATDGQGNSKGYGFIQFDTEAAAKEAIEK--- 190
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GMEL + G Q A T E N++VKN+ D+V + EL+
Sbjct: 191 --VNGMELNDKVVYVGPFQRRAERG-----------TTETKFNNVFVKNLGDEVTDEELR 237
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYVAIAQ 235
+ F G ++SV I + G SKGFGFVC+ P++A++A+ L+G + K V AQ
Sbjct: 238 KVFEGFGPVTSVMISKDEDGKSKGFGFVCYETPEDASKAVEELDGKHGEEDKKWVVCRAQ 297
Query: 236 TKRERTSYLRIMY 248
K ER + L+ +
Sbjct: 298 KKAEREAELKAKF 310
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 23/187 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L S+ +L+++FS G + S +V ++++ +S GY +V +S + A AI+
Sbjct: 46 YVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITR--RSLGYAYVNFSQAQDAARAIDV 103
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L V G + RI LY + D + N+++KN++ D+D +
Sbjct: 104 LNFQVVNGKPI--------RI--------LYSQR--DPTIRKSGVGNIFIKNLDKDIDTV 145
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ F+Q G I S K+ +G SKG+GF+ F A AI +NG+ + K +YV
Sbjct: 146 ALRDTFAQFGNIVSAKVATDGQGNSKGYGFIQFDTEAAAKEAIEKVNGMELNDKVVYVGP 205
Query: 234 AQTKRER 240
Q + ER
Sbjct: 206 FQRRAER 212
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 9/201 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + L F +G I S+ ++ DG+SK +GFV + E A A+E L
Sbjct: 214 YVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNG 273
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V+ E Y G+ Q+ + + V E ++DK NLY+KN++D + +
Sbjct: 274 KKVDDKEWYV-----GKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITD 328
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS+ G I+S KIMR G+S+G GFV FS P+EA+RA+ +NG + KPLYVA
Sbjct: 329 EKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVA 388
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K +R + L+ +++ P
Sbjct: 389 VAQRKEDRRARLQAQFSQMRP 409
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 97/189 (51%), Gaps = 14/189 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID+ LH FS FG I S K+ G+SKGYGFVQ+ ++SA NAI+KL
Sbjct: 123 FIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNG 182
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ + K D+V + N+YVKN+++ E +LK
Sbjct: 183 MLINDKQVFV--------------GHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLK 228
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G I+S +MR G SK FGFV F N ++A +A+ LNG K YV AQ
Sbjct: 229 NEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQK 288
Query: 237 KRERTSYLR 245
K ER L+
Sbjct: 289 KSEREQELK 297
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L +++ +L+ +F++ G + S +V +S GYG+V ++ + A A++ L
Sbjct: 35 YVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLN 94
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ P + S +Y D + + N+++KN++ +D L
Sbjct: 95 ---------FTP-------MNNKSIRVMYSHR--DPSSRKSGTANIFIKNLDKTIDHKAL 136
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S KI G SKG+GFV F D A AI+ LNG+L + K ++V
Sbjct: 137 HDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFL 196
Query: 236 TKRERTSYL 244
K++R + L
Sbjct: 197 RKQDRDNVL 205
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 20/106 (18%)
Query: 151 DVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFS 207
+V + + +LYV ++ +V++ +L F+Q G + SV++ R T R + G+G+V F+
Sbjct: 24 NVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSL--GYGYVNFT 81
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
NP +A RA++ LN + K +R+MY+ + P
Sbjct: 82 NPQDAARALDVLNFTPMNNK---------------SIRVMYSHRDP 112
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 113/198 (57%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + + Q+F +FG++ S+ + ++G+SKG+GFV + E A +E L+
Sbjct: 232 YVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESLHD 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ G +L+ R Q+ A K+ + E++ NLY+KN+ D+VD+
Sbjct: 292 FELNGKKLFV-----TRAQKKAEREEELRKSYEQAKNEKLSKYQGVNLYIKNLEDEVDDE 346
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+Q F G I+S K+MR +G SKGFGFVCFS+PDEA +A+ +N + KPLYV++
Sbjct: 347 RLRQEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 406
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 407 AQRREVRRQQLESQIAQR 424
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 104/200 (52%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG++ S KV + G+SKGYGFV Y T E+A AI+ +
Sbjct: 139 FIKNLDEGIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADTAIKAVNG 198
Query: 117 ATVEGMELY-APSL----RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y P + R +I+E A F N+YVKN+D +VT
Sbjct: 199 MLLNDKKVYVGPHISRKERQSKIEEMKAQFTNVYVKNIDAEVT----------------- 241
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
DE E +Q F Q G ++S I R G SKGFGFV F +EA + + +L+ + K L+
Sbjct: 242 DE-EFRQLFEQFGNVTSAVIQRDEEGRSKGFGFVNFEKHEEAQKGVESLHDFELNGKKLF 300
Query: 231 VAIAQTKRERTSYLRIMYAK 250
V AQ K ER LR Y +
Sbjct: 301 VTRAQKKAEREEELRKSYEQ 320
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L T+ L +IF+ G + S + V +D +S GY +V Y A+E+
Sbjct: 51 YVGELDPTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 108
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G RA RI S D + N+++KN+++ +D
Sbjct: 109 LNYSLIKG--------RACRIMWSQR----------DPALRKTGQGNIFIKNLDEGIDNK 150
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G + S K+ G SKG+GFV + + A+ AI +NG+L + K +YV
Sbjct: 151 ALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGP 210
Query: 234 AQTKRERTSYLRIMYAK 250
+++ER S + M A+
Sbjct: 211 HISRKERQSKIEEMKAQ 227
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 124/247 (50%), Gaps = 34/247 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L +F KFG S KV+ + GKSKG+GFV + E A A+++L
Sbjct: 162 YVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSKGFGFVSFERGEDAQKAVDELNG 221
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVK ++D +D+ L+
Sbjct: 222 KELSGKQIYV--GRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYLDDYIDDERLR 279
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 280 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQR 338
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP---- 292
K ER ++L TN +H T RA +PN S P
Sbjct: 339 KEERQAHL-------------TNEHMHRTASVRA--------------VPNPASKPYQPA 371
Query: 293 PPSPLFL 299
PPS F+
Sbjct: 372 PPSGYFM 378
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 80 IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESAS 139
++ S VV ++G SKGYGFV + TQE+A AIEK+ + +++ ++ + +E+
Sbjct: 93 LRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKEREA-- 149
Query: 140 FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK 199
L E N+YVKN +D+D+ LK F + G SVK+M RG SK
Sbjct: 150 -------ELGARAKEFT---NVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTDERGKSK 199
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
GFGFV F ++A +A++ LNG K +YV AQ K ER + L+
Sbjct: 200 GFGFVSFERGEDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELK 245
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R S G+ +V F +P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRR--SSGYAYVNFQHPKDAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + + K +RIM++++ P L
Sbjct: 70 DTMNFDVINGK---------------SVRIMWSQRDPSL 93
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL ++F K+G I S KV++ DGKS+G+GFV + ++A A+ +L
Sbjct: 174 YVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNG 233
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
V EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 234 KEVAEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSID 287
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYV
Sbjct: 288 DERLRKEFAPFGTITSAKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 346
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 347 ALAQRKEDRKAHLASQYMQR 366
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 99/190 (52%), Gaps = 34/190 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+++
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNG 161
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +L F N+YVKN +D+T++ +LK
Sbjct: 162 MLLNGKKL---------------FTNVYVKNFGEDMTDD------------------KLK 188
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIAQ 235
+ F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV AQ
Sbjct: 189 EMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 248
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 249 KKAERQQELK 258
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K L+ +
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFTNV 173
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ P L
Sbjct: 70 DTMNFDMIKGRP---------------IRIMWSQRDPSL 93
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 12/204 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL F K+G + S+KV+ G S+G+GFV Y +SA A E++
Sbjct: 196 YVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMND 255
Query: 117 ATVE-GMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
V+ G +Y GR Q+ A +K + + +E + + NLYVKN++ +D
Sbjct: 256 MEVDDGRRIYV-----GRAQKKAE-RQAELKAKFEKIKQERIQRYQGVNLYVKNLDSTID 309
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E L++ FSQ G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYV
Sbjct: 310 EEILRKEFSQFGTITSSKVM-TENGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYV 368
Query: 232 AIAQTKRERTSYLRIMYAKQGPGL 255
A+AQ K +R + L Y ++ G+
Sbjct: 369 ALAQRKEDRKAQLASQYMQRMAGM 392
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 17/197 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV + G SKG+GFV + TQE+A A+ K+
Sbjct: 103 FIKNLDKSIDNKAIYDTFSAFGNILSCKVAQDETGSSKGFGFVHFETQEAADEAMAKVNG 162
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R+ R+ + N+YVKN D D+ +
Sbjct: 163 MMLNGKKVYVGRFVPRSERLAAMGEAQKRFT--------------NIYVKNFGDKWDDDK 208
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYVAI 233
L+ +F + G + S K+M + G S+GFGFV + PD A +A +N + + +YV
Sbjct: 209 LRDFFEKYGKVVSAKVMTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRIYVGR 268
Query: 234 AQTKRERTSYLRIMYAK 250
AQ K ER + L+ + K
Sbjct: 269 AQKKAERQAELKAKFEK 285
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 93/225 (41%), Gaps = 53/225 (23%)
Query: 21 SLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDI 80
SLYVGDLD D+ AM L++ FS G +
Sbjct: 13 SLYVGDLDP--------------DITEAM--------------------LYEKFSPAGPV 38
Query: 81 QSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESAS 139
S +V +S GY +V + A A++ + T++G + RI S
Sbjct: 39 LSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTMNFDTIKGKPM--------RIMWSQR 90
Query: 140 FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK 199
+L + N+++KN++ +D + FS G I S K+ + G SK
Sbjct: 91 DPSLRKSGVG----------NVFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQDETGSSK 140
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
GFGFV F + A+ A+ +NG++ + K +YV + ER + +
Sbjct: 141 GFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSERLAAM 185
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 111/191 (58%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + + ++F+KFG I S+ + DGK KG+GFV Y E A+ A+E L
Sbjct: 111 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALND 170
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ + G +LY GR Q+ ++ K + E++ NL+VKN++D VD+
Sbjct: 171 SELNGEKLYV-----GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 225
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+MRT G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 226 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 285
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 286 AQRKDVRRSQL 296
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 105/198 (53%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FGDI SSK+ ++GKSKG+GFV + + +A AI+ L
Sbjct: 18 FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNG 77
Query: 117 ATVEGMELY-APSL----RAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G E+Y AP L R +++E+ A + NLYVKN++ + T+E
Sbjct: 78 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDE--------------- 122
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ ++ F++ G I S + + G KGFGFV + ++A +A+ LN + + LY
Sbjct: 123 ---QFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLY 179
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER L+ Y
Sbjct: 180 VGRAQKKNERMHVLKKQY 197
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ D+D L FS G I S KI G SKGFGFV F A AI+ L
Sbjct: 16 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+L + + +YVA +++ER S L
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQLE 101
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL ++F K+G I S KV++ DGKS+G+GFV + ++A A+ +L
Sbjct: 195 YVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNG 254
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
V EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 255 KEVAEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSID 308
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYV
Sbjct: 309 DERLRKEFAPFGTITSAKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 368 ALAQRKEDRKAHLASQYMQR 387
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+++
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ + +
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFGEDMTDDK 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK+ F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGR 267
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 268 AQKKAERQQELK 279
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L D+TE +L + FS G + S+++ R T R +
Sbjct: 12 SLYVGDLHSDITEAMLFEK------------------FSSAGPVLSIRVCRDMITRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V F P +A RA++T+N + +P +RIM++++ P L
Sbjct: 53 -GYAYVNFQQPADAERALDTMNFDMIKGRP---------------IRIMWSQRDPSL 93
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL ++F K+G I S KV++ DGKS+G+GFV + ++A A+ +L
Sbjct: 195 YVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNG 254
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
V EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 255 KEVAEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSID 308
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYV
Sbjct: 309 DERLRKEFAPFGTITSAKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 368 ALAQRKEDRKAHLASQYMQR 387
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+++
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ + +
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFGEDMTDDK 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK+ F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGR 267
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 268 AQKKAERQQELK 279
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L D+TE +L + FS G + S+++ R T R +
Sbjct: 12 SLYVGDLHSDITEAMLFEK------------------FSSAGPVLSIRVCRDMITRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V F P +A RA++T+N + +P +RIM++++ P L
Sbjct: 53 -GYAYVNFQQPADAERALDTMNFDMIKGRP---------------IRIMWSQRDPSL 93
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 117/215 (54%), Gaps = 9/215 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQ 268
AQ K ER + L Y ++ + + + P+ + Q
Sbjct: 368 AQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQ 402
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEF--------TNIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ D +D L FS G I S K+ G S+GFGFV F + A +AINT+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V +++RER + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAEL 183
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
+T+N + +P +RIM++++ PGL +
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGLRKS 96
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 140/291 (48%), Gaps = 43/291 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNA------ 110
+ N +D+ +L +IFSKFG S KV++ G+SKG+GFV + E A A
Sbjct: 194 YIKNFGDDMDDDRLREIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEKHEEAQKARGSSCC 253
Query: 111 -----IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NL 161
+ A + G E+ + GR Q+ + +K + + +E + + NL
Sbjct: 254 AQRPPLRWQAVADMNGKEINGRIVYVGRAQKRLERQS-ELKRKFEQIKQERVSRYQGVNL 312
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
YVKN++D +D+ L++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG
Sbjct: 313 YVKNLDDGIDDDRLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNG 371
Query: 222 ILFHQKPLYVAIAQTKRERTSYLRIMYAKQ--------GPGLASTNFP------------ 261
+ KPLYVA+AQ K ER + L Y ++ GP L S P
Sbjct: 372 RIVSTKPLYVALAQRKEERKAILTNQYMQRLATLRALPGPLLGSFQPPPGYFLPPIPQPQ 431
Query: 262 VHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSPLFLTRAGQAAANNLTN 312
T Y + V P R S PPP+P+ RA LTN
Sbjct: 432 TRATFYSPSPVVPVRPATRWSAQP----SRPPPTPIL--RAAVPPRRLLTN 476
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 29/205 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G S+GYGFV + T E+A AIE +
Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R + A F + + N+Y+KN DD+D+ L+
Sbjct: 161 MLLNDRKVFVGHFKS-RKEREAEFG-----------AKAMEFTNVYIKNFGDDMDDDRLR 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR----------------AINTLN 220
+ FS+ G SVK+M + G SKGFGFV F +EA + A+ +N
Sbjct: 209 EIFSKFGKTLSVKVMMDSTGRSKGFGFVNFEKHEEAQKARGSSCCAQRPPLRWQAVADMN 268
Query: 221 GILFHQKPLYVAIAQTKRERTSYLR 245
G + + +YV AQ + ER S L+
Sbjct: 269 GKEINGRIVYVGRAQKRLERQSELK 293
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 32/193 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPVDAERALDTMN 73
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
++G + P LR + N+++KNLD D
Sbjct: 74 FEVIKGRPIRIMWSQRDPGLR------KSGVGNVFIKNLD------------------DS 109
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D L FS G I S K++ G S+G+GFV F + A RAI T+NG+L + + +
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENG-SRGYGFVHFETHEAATRAIETMNGMLLNDRKV 168
Query: 230 YVAIAQTKRERTS 242
+V ++++ER +
Sbjct: 169 FVGHFKSRKEREA 181
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSL--GYAYINFQQPVDAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 111/191 (58%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + + ++F+KFG I S+ + DGK KG+GFV Y E A+ A+E L
Sbjct: 222 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALND 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ + G +LY GR Q+ ++ K + E++ NL+VKN++D VD+
Sbjct: 282 SELNGEKLYV-----GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+MRT G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 397 AQRKDVRRSQL 407
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 112/221 (50%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
RLC + + D I F NL IDN L+ FS FGDI SSK+ ++GKS
Sbjct: 107 RLCRIMWSQRDPSLRKKGSGNI-FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKS 165
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSL----RAGRIQES-ASFNNLYVKN 147
KG+GFV + + +A AI+ L + G E+Y AP L R +++E+ A + NLYVKN
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKN 225
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
++ + T+E + ++ F++ G I S + + G KGFGFV +
Sbjct: 226 INSETTDE------------------QFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 267
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
++A +A+ LN + + LYV AQ K ER L+ Y
Sbjct: 268 KHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ +L ++ L+ IFS G + S + V +D +K GY +V ++ E+ AIE+
Sbjct: 41 YVGDLEPSVSEAHLYDIFSPIGSV--SSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S +L K N+++KN++ D+D
Sbjct: 99 LNYTPIKG--------RLCRIMWSQRDPSLRKKG----------SGNIFIKNLHPDIDNK 140
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G SKGFGFV F A AI+ LNG+L + + +YVA
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 234 AQTKRERTSYLR 245
+++ER S L
Sbjct: 201 HLSRKERDSQLE 212
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 120/203 (59%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +++ +L ++F K+G S KV+ GKS+G+GFV + E A A+E+
Sbjct: 194 YIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEE--- 250
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G EL ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 251 --INGTELNGKTVFVGRAQKKME-RQAELKRKFELLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGM 389
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN D++++ +LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDEMEDEQLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M + G S+GFGFV F ++AN+A+ +NG + K ++V AQ
Sbjct: 209 EMFEKYGKTLSVKVMTDSSGKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KMERQAELK 277
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L I L++ FS G + S +V +S GY +V +S A A++ +
Sbjct: 14 YVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V+G + RI S +L + N+++KN++ +D L
Sbjct: 74 FDVVKGKPI--------RIMWSQRDPSLRKSGVG----------NVFIKNLDKSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G SKG+ FV F D A+RAI +NG+L + + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 236 TKRERTSYL 244
+++ER + L
Sbjct: 175 SRKEREAEL 183
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V FS P +A RA+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFSQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVVKGKP---------------IRIMWSQRDPSL 93
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 111/191 (58%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + + ++F+KFG I S+ + DGK KG+GFV Y E A+ A+E L
Sbjct: 222 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALND 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ + G +LY GR Q+ ++ K + E++ NL+VKN++D VD+
Sbjct: 282 SELNGEKLYV-----GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+MRT G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 397 AQRKDVRRSQL 407
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 112/221 (50%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
RLC + + D I F NL IDN L+ FS FGDI SSK+ ++GKS
Sbjct: 107 RLCRIMWSQRDPSLRKKGSGNI-FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKS 165
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSL----RAGRIQES-ASFNNLYVKN 147
KG+GFV + + +A AI+ L + G E+Y AP L R +++E+ A + NLYVKN
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKN 225
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
++ + T+E + ++ F++ G I S + + G KGFGFV +
Sbjct: 226 INSETTDE------------------QFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 267
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
++A +A+ LN + + LYV AQ K ER L+ Y
Sbjct: 268 KHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ +L ++ L+ IFS G + S + V +D +K GY +V ++ E+ AIE+
Sbjct: 41 YVGDLEPSVSEAHLYDIFSPIGSV--SSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S +L K N+++KN++ D+D
Sbjct: 99 LNYTPIKG--------RLCRIMWSQRDPSLRKKG----------SGNIFIKNLHPDIDNK 140
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G SKGFGFV F A AI+ LNG+L + + +YVA
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 234 AQTKRERTSYLR 245
+++ER S L
Sbjct: 201 HLSRKERDSQLE 212
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 111/191 (58%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + + ++F+KFG I S+ + DGK KG+GFV Y E A+ A+E L
Sbjct: 222 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALND 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ + G +LY GR Q+ ++ K + E++ NL+VKN++D VD+
Sbjct: 282 SELNGEKLYV-----GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+MRT G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 397 AQRKDVRRSQL 407
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 112/221 (50%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
RLC + + D I F NL IDN L+ FS FGDI SSK+ ++GKS
Sbjct: 107 RLCRIMWSQRDPSLRKKGSGNI-FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKS 165
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSL----RAGRIQES-ASFNNLYVKN 147
KG+GFV + + +A AI+ L + G E+Y AP L R +++E+ A + NLYVKN
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKN 225
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
++ + T+E + ++ F++ G I S + + G KGFGFV +
Sbjct: 226 INSETTDE------------------QFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 267
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
++A +A+ LN + + LYV AQ K ER L+ Y
Sbjct: 268 KHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ +L ++ L+ IFS G + S + V +D +K GY +V ++ E+ AIE+
Sbjct: 41 YVGDLEPSVSEAHLYDIFSPIGSV--SSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S +L K N+++KN++ D+D
Sbjct: 99 LNYTPIKG--------RLCRIMWSQRDPSLRKKG----------SGNIFIKNLHPDIDNK 140
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G SKGFGFV F A AI+ LNG+L + + +YVA
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 234 AQTKRERTSYLR 245
+++ER S L
Sbjct: 201 HLSRKERDSQLE 212
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 111/191 (58%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + + ++F+KFG I S+ + DGK KG+GFV Y E A+ A+E L
Sbjct: 222 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALND 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ + G +LY GR Q+ ++ K + E++ NL+VKN++D VD+
Sbjct: 282 SELNGEKLYV-----GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+MRT G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 397 AQRKDVRRSQL 407
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 112/221 (50%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
RLC + + D I F NL IDN L+ FS FGDI SSK+ ++GKS
Sbjct: 107 RLCRIMWSQRDPSLRKKGSGNI-FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKS 165
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSL----RAGRIQES-ASFNNLYVKN 147
KG+GFV + + +A AI+ L + G E+Y AP L R +++E+ A + NLYVKN
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKN 225
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
++ + T+E + ++ F++ G I S + + G KGFGFV +
Sbjct: 226 INSETTDE------------------QFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 267
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
++A +A+ LN + + LYV AQ K ER L+ Y
Sbjct: 268 KHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ +L ++ L+ IFS G + S + V +D +K GY +V ++ E+ AIE+
Sbjct: 41 YVGDLEPSVSEAHLYDIFSPIGSV--SSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S +L K N+++KN++ D+D
Sbjct: 99 LNYTPIKG--------RLCRIMWSQRDPSLRKKG----------SGNIFIKNLHPDIDNK 140
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G SKGFGFV F A AI+ LNG+L + + +YVA
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 234 AQTKRERTSYLR 245
+++ER S L
Sbjct: 201 HLSRKERDSQLE 212
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 115/192 (59%), Gaps = 11/192 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 5 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 64
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 65 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 118
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 119 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 177
Query: 233 IAQTKRERTSYL 244
+AQ K ER ++L
Sbjct: 178 LAQRKEERKAHL 189
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+Y+KN ++VD+ LK+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +
Sbjct: 3 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAK 250
NG K ++V AQ K ER + L+ + +
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAELKRKFEQ 93
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL ++F K+G I S KV++ DGKS+G+GFV + ++A A+ +L
Sbjct: 195 YVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNG 254
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
V EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 255 KEVAEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSID 308
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYV
Sbjct: 309 DERLRKEFAPFGTITSAKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 368 ALAQRKEDRKAHLASQYMQR 387
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+++
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ + +
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFGEDMTDDK 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK+ F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGR 267
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 268 AQKKAERQQELK 279
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L D+TE +L + FS G + S+++ R T R +
Sbjct: 12 SLYVGDLHSDITEAMLFEK------------------FSSAGPVLSIRVCRDMITRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V F P +A RA++T+N + +P +RIM++++ P L
Sbjct: 53 -GYAYVNFQQPADAERALDTMNFDMIKGRP---------------IRIMWSQRDPSL 93
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 111/191 (58%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + + ++F+KFG I S+ + DGK KG+GFV Y E A+ A+E L
Sbjct: 222 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALND 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ + G +LY GR Q+ ++ K + E++ NL+VKN++D VD+
Sbjct: 282 SELNGEKLYV-----GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+MRT G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 397 AQRKDVRRSQL 407
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 112/221 (50%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
RLC + + D I F NL IDN L+ FS FGDI SSK+ ++GKS
Sbjct: 107 RLCRIMWSQRDPSLRKKGSGNI-FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKS 165
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSL----RAGRIQES-ASFNNLYVKN 147
KG+GFV + + +A AI+ L + G E+Y AP L R +++E+ A + NLYVKN
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKN 225
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
++ + T+E + ++ F++ G I S + + G KGFGFV +
Sbjct: 226 INSETTDE------------------QFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 267
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
++A +A+ LN + + LYV AQ K ER L+ Y
Sbjct: 268 KHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ +L ++ L+ IFS G + S + V +D +K GY +V ++ E+ AIE+
Sbjct: 41 YVGDLEPSVSEAHLYDIFSPIGSV--SSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S +L K N+++KN++ D+D
Sbjct: 99 LNYTPIKG--------RLCRIMWSQRDPSLRKKG----------SGNIFIKNLHPDIDNK 140
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G SKGFGFV F A AI+ LNG+L + + +YVA
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 234 AQTKRERTSYLR 245
+++ER S L
Sbjct: 201 HLSRKERDSQLE 212
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 118/203 (58%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +++ +L ++F K+G S KV+ GKS+G+GF+ Y E A A+E +
Sbjct: 194 YIKNFGDDMNDERLKELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G EL ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 252 ---NGTELNGKTVFVGRAQKKME-RQAELKRKFEMLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVM-LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y ++ G+
Sbjct: 367 LAQRKEERKAHLTNQYMQRIAGM 389
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+++ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGDDMNDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G S+GFGF+ + ++AN+A+ +NG + K ++V AQ
Sbjct: 209 ELFDKYGKTLSVKVMTDPTGKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KMERQAELK 277
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L I L++ FS G + S +V +S GY +V +S A A++ +
Sbjct: 14 YVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V+G + RI S +L + N+++KN++ +D L
Sbjct: 74 FDVVKGKPI--------RIMWSQRDPSLRKSGVG----------NVFIKNLDKSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G SKG+ FV F D A+RAI +NG+L + + ++V +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK 174
Query: 236 TKRERTSYL 244
+++ER + L
Sbjct: 175 SRKEREAEL 183
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V FS P +A RA+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFSQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVVKGKP---------------IRIMWSQRDPSL 93
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL ++F K+G I S KV++ DGKS+G+GFV + ++A A+ +L
Sbjct: 195 YVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNG 254
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
V EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 255 KEVAEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSID 308
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYV
Sbjct: 309 DERLRKEFAPFGTITSAKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 368 ALAQRKEDRKAHLASQYMQR 387
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+++
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ + +
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFGEDMTDDK 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYVAI 233
LK+ F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGR 267
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 268 AQKKAERQQELK 279
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L D+TE +L + FS G + S+++ R T R +
Sbjct: 12 SLYVGDLHSDITEAMLFEK------------------FSSAGPVLSIRVCRDMITRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V F P +A RA++T+N + +P +RIM++++ P L
Sbjct: 53 -GYAYVNFQQPADAERALDTMNFDMIKGRP---------------IRIMWSQRDPSL 93
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 128/237 (54%), Gaps = 15/237 (6%)
Query: 50 ATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESAL 108
+P F V N + T + L Q+FS +G I S+ V+ DGKS+ +GFV + + +SA+
Sbjct: 179 GSPKFTNVYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAV 238
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKN 165
A+E+L TV ++ L GR Q A + + E+ NLYVKN
Sbjct: 239 AAVERLNGTTVNDDKV----LYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKN 294
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ ++++ +LK+ FS+ G I+S K+M G SKG+GFV FS P ANRA++ +NG +
Sbjct: 295 LDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMNGKMIG 354
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHG 282
++PLYVA+AQ K ER + L +++ A T+ P + VY RHG
Sbjct: 355 RRPLYVAVAQRKEERKALLEAQFSQMHALYAITHLPT-------GIPVYHPGAPRHG 404
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 103/197 (52%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F+ FG + SSKV V G+SKGYGFVQ+ +ESA NAI++L
Sbjct: 96 FIKNLDISIDNKTLHDTFAAFGFVLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNG 155
Query: 117 ATVEGMELYAPSL--RAGRIQESAS--FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y R R Q S F N+YVKN + T+E
Sbjct: 156 MLINDKKVYVGLFVNRQERAQVDGSPKFTNVYVKNFSETYTDE----------------- 198
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH-QKPLYV 231
+L+Q FS G I+S +M+ G S+ FGFV F +PD A A+ LNG + K LYV
Sbjct: 199 -DLEQLFSTYGTITSAVVMKDTDGKSRCFGFVNFESPDSAVAAVERLNGTTVNDDKVLYV 257
Query: 232 AIAQTKRERTSYLRIMY 248
AQ K ER + L+ +
Sbjct: 258 GRAQRKAEREAELKARF 274
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 30/190 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ +L +D +L Q+F++ G I S +V + +S GY +V + + A NA+E L
Sbjct: 9 YVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHLNF 68
Query: 117 ATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G + PS+R + + N+++KNLD +
Sbjct: 69 TPLNGKSIRVMFSNRDPSIR------KSGYANVFIKNLDISI------------------ 104
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D L F+ G + S K+ + G SKG+GFV F N + A AI LNG+L + K +Y
Sbjct: 105 DNKTLHDTFAAFGFVLSSKVAVDSIGQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVY 164
Query: 231 VAIAQTKRER 240
V + ++ER
Sbjct: 165 VGLFVNRQER 174
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
+LYV ++ +VDE +L Q F++ G I S+++ R S G+ +V F NP +A A+ L
Sbjct: 7 SLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHL 66
Query: 220 N 220
N
Sbjct: 67 N 67
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 117/197 (59%), Gaps = 12/197 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N + + KL ++F K+G I S KV++ DGKS+G+GFV + ++A A+ +L V
Sbjct: 169 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 228
Query: 120 -EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIE 174
EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D+
Sbjct: 229 AEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDER 282
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYVA+A
Sbjct: 283 LRKEFAPFGTITSAKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 341
Query: 235 QTKRERTSYLRIMYAKQ 251
Q K +R ++L Y ++
Sbjct: 342 QRKEDRKAHLASQYMQR 358
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 42/190 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+++
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNG 161
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G KN +D+ + +LK
Sbjct: 162 MLLNGK-----------------------------------------KNFGEDMTDDKLK 180
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIAQ 235
+ F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV AQ
Sbjct: 181 EMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 240
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 241 KKAERQQELK 250
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 19/172 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +ID+ +L + F+ FG I S+KV++ ++G+SKG+GFV +S E A A+ ++
Sbjct: 270 YVKNLDDSIDDERLRKEFAPFGTITSAKVMM-EEGRSKGFGFVCFSAPEEATKAVTEMNG 328
Query: 117 ATVEGMELY 125
+ LY
Sbjct: 329 RIIVTKPLY 337
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ P L
Sbjct: 70 DTMNFDMIKGRP---------------IRIMWSQRDPSL 93
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 107/196 (54%), Gaps = 3/196 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ +DGKSKG+GFV + T E+A A++ L
Sbjct: 186 YVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ EG LY RA + E + L E + NLYVKN++D +D+ L
Sbjct: 246 KDMGEGKSLYVA--RAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I+S K+M G SKGFGFVCF+ EA A+ LNG + KPLYVA+AQ
Sbjct: 304 RIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQ 363
Query: 236 TKRERTSYLRIMYAKQ 251
K ER ++L Y Q
Sbjct: 364 RKEERKAHLASQYMLQ 379
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 93 FIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFTEDFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK++F G I+S K+M G SKGFGFV F + A A+ LNG + K LYVA
Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ DV+E L FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLVRNKP---------------IRIMWSQRDPSL 84
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 112/192 (58%), Gaps = 8/192 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + + + + +F+KFG++ S+ V ++GKSKG+GFV + ESA A++ L+
Sbjct: 240 YVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKDEEGKSKGFGFVNFKDHESAQAAVDALHD 299
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
+ G +L+ R Q+ A K+ + E++ NLY+KN+ DD+D+
Sbjct: 300 TELNGKKLFV-----TRAQKKAEREEELRKSYEQAKMEKLSKYQGANLYIKNLEDDMDDD 354
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G I+S KIMR +G SKGFGFVC+S+P+EA +A+ +N + KPLYV+
Sbjct: 355 KLRAEFEPFGTITSCKIMRDEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSP 414
Query: 234 AQTKRERTSYLR 245
AQ + R L
Sbjct: 415 AQRREVRRQQLE 426
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 23/206 (11%)
Query: 42 SIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGF 98
S+ S +TP+ + L ST+ L +IF+ G + S + V +D +S GY +
Sbjct: 44 SVPPASGASTPSASLYVGELDSTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAY 101
Query: 99 VQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD 158
V Y A+E+L + ++ RA RI S D +
Sbjct: 102 VNYLNAADGERALEQLNYSLIKN--------RACRIMWSQR----------DPALRKTGQ 143
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
N+++KN+++ +D L F+ G + S K+ G S+GFGFV + + A+ AI
Sbjct: 144 GNIFIKNLDEQIDHKALHDTFAAFGNVLSCKVATDENGRSRGFGFVHYDTAEAADTAIKA 203
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYL 244
+NG+L + K ++V +K+ER +++
Sbjct: 204 VNGMLLNDKKVFVGHYISKKERQAHI 229
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 116/200 (58%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL ++F K+G I S KV++ DGKS+G+GFV + SA A+ L
Sbjct: 217 YVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNG 276
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 277 KEIAEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTID 330
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYV
Sbjct: 331 DERLRKEFTPFGTITSAKVM-MEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 389
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 390 ALAQRKEDRKAHLASQYMQR 409
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +IEK+
Sbjct: 124 FIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKVNG 183
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ + +
Sbjct: 184 MLLNGKKVYVGKFIPRKERQKELGEKAKLFT--------------NVYVKNFGEDMTDDK 229
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK+ F + G I+S K+M + G S+GFGFV F +P+ A +A+ LNG + K +YV
Sbjct: 230 LKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGR 289
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 290 AQKKAERQQELK 301
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ ++D + FS G I S K+ + G SKG+GFV F + AN++I +
Sbjct: 122 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESGASKGYGFVHFETEEAANKSIEKV 181
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 182 NGMLLNGKKVYVGKFIPRKERQKEL 206
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 153/311 (49%), Gaps = 46/311 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + +L Q+F K+G I S + DG SKG+GFV + + A NA++ L+
Sbjct: 212 YVKNIPFDVTDEELSQLFGKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQNAVDDLHK 271
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-------NLYVKNINDD 169
G +LY A N + L E L+K NLYVKN++DD
Sbjct: 272 KDFRGQDLYV---------SRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDDD 322
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+D+ L+ FS G+I+S KIMR + IS+GFGFVCF++P++A RA+ +NG + KP
Sbjct: 323 MDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRIIGSKP 382
Query: 229 LYVAIAQTKRERTSYLRIMYAKQG----PGLASTNFPVHPTLY--------QRALQVYQA 276
+YVAIAQ K R S L I A++ + + FP PT+Y + V+Q
Sbjct: 383 IYVAIAQRKEVRRSQLEIQMAQRNQLKQAMMPPSVFP--PTMYGPPAGMAAAASRSVFQG 440
Query: 277 ---PGFRHGGMIPNGFSSPPPSPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERK 333
P F G SPPP P + ++A L + L P+ ++
Sbjct: 441 APMPSFPAQGYPATQRLSPPPQP---AKPAESAVRPLIAQD---------LENFPPETQR 488
Query: 334 DILGQGLYPLV 344
+LG+ LYPL+
Sbjct: 489 QMLGERLYPLM 499
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 104/195 (53%), Gaps = 14/195 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ LH FS FG+I S K+ + G SKGYGFV Y T E+A +AI+
Sbjct: 119 FIKNLDPSIDHKALHDTFSAFGNILSCKIAHDEQGNSKGYGFVHYETLEAAESAIK---- 174
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
+V GM L + G +++ K + + E + N+YVKNI DV + EL
Sbjct: 175 -SVNGMLLNDRKVFVG--------HHISRKERESKLGESRVQFTNIYVKNIPFDVTDEEL 225
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
Q F + G I+S I R + G SKGFGFV F +A A++ L+ F + LYV+ AQ
Sbjct: 226 SQLFGKYGTITSCVITRDDDGTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQ 285
Query: 236 TKRERTSYLRIMYAK 250
K ER LR Y +
Sbjct: 286 KKNEREEELRRQYEE 300
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++F+ G + S + V +D +S GY +V + A A+E
Sbjct: 31 YVGELDPSVTEAMLFEMFNIIGPV--SSIRVCRDAVTRRSLGYAYVNFHRMADAERALET 88
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G R+ RI S +L N + N+++KN++ +D
Sbjct: 89 LNYSMIKG--------RSCRIMWSQRDPSLRKGN----------NGNIFIKNLDPSIDHK 130
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI +G SKG+GFV + + A AI ++NG+L + + ++V
Sbjct: 131 ALHDTFSAFGNILSCKIAHDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGH 190
Query: 234 AQTKRERTSYL 244
+++ER S L
Sbjct: 191 HISRKERESKL 201
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + ++FS+FG + S+ + ++GKSKG+GFV + E A A++ L+
Sbjct: 238 YVKNLDLEVTQDQFVELFSQFGAVTSAVIQTDEEGKSKGFGFVNFENHEQAAKAVDTLHD 297
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
G +L+ R Q+ A K+ + E++ NLY+KN+ DDVD+
Sbjct: 298 TDFNGKKLFV-----SRAQKKAEREEELRKSYESAKMEKLSKYQGVNLYIKNLEDDVDDE 352
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G I+S K+MR ++G SKGFGFVCFS+PDEA +A+ +N + KPLYV++
Sbjct: 353 KLRAEFEPFGTITSCKVMRDDKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSL 412
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 413 AQRREVRRQQLESQIAQR 430
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 108/208 (51%), Gaps = 34/208 (16%)
Query: 57 FTVNLASTIDN----------WKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQES 106
F NL IDN LH F+ FG++ S KV + G+S+GYG+V Y T E+
Sbjct: 135 FIKNLDELIDNKVRTAQKTPPHALHDTFAAFGNVLSCKVATDEQGRSRGYGYVHYETAEA 194
Query: 107 ALNAIEKLYAATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKN 160
A +AI+ + + ++Y + R +++E A F NLYVKNLD +VT++
Sbjct: 195 AESAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMRAHFTNLYVKNLDLEVTQDQF--- 251
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+EL FSQ G ++S I G SKGFGFV F N ++A +A++TL+
Sbjct: 252 ------------VEL---FSQFGAVTSAVIQTDEEGKSKGFGFVNFENHEQAAKAVDTLH 296
Query: 221 GILFHQKPLYVAIAQTKRERTSYLRIMY 248
F+ K L+V+ AQ K ER LR Y
Sbjct: 297 DTDFNGKKLFVSRAQKKAEREEELRKSY 324
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 29/204 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L T+ L +IF+ G + S + V +D +S GY +V Y A+E+
Sbjct: 47 YVGELDPTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNVTDGERALEQ 104
Query: 114 LYAATVEGMELYAPSLRAGRIQES--------ASFNNLYVKNLDDDVTEEILDKNLYVKN 165
L + ++G RA RI S N+++KNLD E++D +
Sbjct: 105 LNYSLIKG--------RACRIMWSQRDPALRKTGQGNIFIKNLD-----ELIDNKVRTAQ 151
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
L F+ G + S K+ +G S+G+G+V + + A AI +NG+L +
Sbjct: 152 ---KTPPHALHDTFAAFGNVLSCKVATDEQGRSRGYGYVHYETAEAAESAIKAVNGMLLN 208
Query: 226 QKPLYVAIAQTKRERTSYLRIMYA 249
K +YV +++ER S L M A
Sbjct: 209 DKKVYVGYHISRKERQSKLEEMRA 232
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 119/207 (57%), Gaps = 18/207 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + +L +F KFG I S KV+ DGKSKG+GFV + + E+A A++ L
Sbjct: 195 YVKNFGEDLSEEQLRNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALNG 254
Query: 117 AT-VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
VEG LY GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 255 KELVEGKPLYV-----GRAQKKAE-RQQELKRRFEALKMERLNRYQGVNLYVKNLDDTID 308
Query: 172 EIELKQYFSQCGIISSVKIM----RTNRGI---SKGFGFVCFSNPDEANRAINTLNGILF 224
+ L++ F+ G I+S K+M +T I SKGFGFVCFS+P+EA +A+ +NG +
Sbjct: 309 DERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAVTEMNGRIV 368
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAKQ 251
KPLYVA+AQ K +R ++L Y ++
Sbjct: 369 GSKPLYVALAQRKEDRKAHLTSQYMQR 395
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 108/191 (56%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV ++G SKGYGFV + T+E+A +IEK
Sbjct: 102 FIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEK--- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L + GR + K + ++ E+ L N+YVKN +D+ E +L
Sbjct: 159 --VNGMLLNGKKVYVGRF--------IPRKEREKELGEKAKLFTNVYVKNFGEDLSEEQL 208
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIA 234
+ F + G I+S K+M + G SKGFGFV F +P+ A A++ LNG L KPLYV A
Sbjct: 209 RNMFEKFGKITSYKVMSKDDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPLYVGRA 268
Query: 235 QTKRERTSYLR 245
Q K ER L+
Sbjct: 269 QKKAERQQELK 279
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 23/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L S I L FS G + S +V ++++ +S GY +V + A A++
Sbjct: 14 YVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITR--RSLGYAYVNFQQPADAERALDT 71
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ + G R RI S +L + N+++KN++ +D
Sbjct: 72 MNFDLIRG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDRSIDNK 113
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ FS G I S K+ + G SKG+GFV F + AN++I +NG+L + K +YV
Sbjct: 114 AMYDTFSAFGNILSCKVAQDENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGR 173
Query: 234 AQTKRERTSYL 244
++ER L
Sbjct: 174 FIPRKEREKEL 184
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 40/118 (33%)
Query: 142 NLYVKNLDDDVTEEIL-DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGI 197
+LYV +L D+TE +L DK FS G + S+++ R T R +
Sbjct: 12 SLYVGDLHSDITEAMLFDK-------------------FSSAGPVLSIRVCRDLITRRSL 52
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V F P +A RA++T+N L +P +RIM++++ P L
Sbjct: 53 --GYAYVNFQQPADAERALDTMNFDLIRGRP---------------IRIMWSQRDPSL 93
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/329 (30%), Positives = 158/329 (48%), Gaps = 47/329 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +++D +L ++FSKFG+IQ++ V+ ++G SK +GF+ ++ SAL AI+++
Sbjct: 197 YVKNLDASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFINFADHASALIAIDEMNE 256
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +L+ RA + E + Y + L + + NLYVKN++D VD+ L+
Sbjct: 257 KDFKNKKLFVG--RAQKKNERRAKLKEYFQKLKQEKVNKYKGLNLYVKNLDDSVDDERLR 314
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
Q FS+ G I+S K+M N+ S+GFGFVCF P+ AN+A+ ++G + KPLYV AQ
Sbjct: 315 QEFSKFGDITSAKVMSDNKQ-SRGFGFVCFKTPEAANKALTEMSGHMIGSKPLYVNFAQP 373
Query: 237 KRERTSYLRIMY-AKQGPGL-----------ASTNFP-----VHPTLY------------ 267
K R S L Y A++ P + A FP + P
Sbjct: 374 KELRRSQLEAQYNARKQPQMIPQMMPQFFIPAQGAFPPPGSQIKPRWQPVAGGRQSNQNR 433
Query: 268 ---------QRALQVYQAPGFRHGGMIP---NGFSSPPPSPLFLTRAGQAAANNLTNGNQ 315
QR + A ++ G I N + P P T Q A +Q
Sbjct: 434 GGMSRGGSSQRGARGGNANTAKNAGRIKYNNNARNQPREQPQQTTPNTQEAQTTQAPSDQ 493
Query: 316 RAAANNSMLAVASPDERKDILGQGLYPLV 344
A LA S ++K +LG+ L+PLV
Sbjct: 494 LTA---EYLAKLSEQDQKQLLGERLFPLV 519
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 23/203 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV-VSQDG-------KSKGYGFVQYSTQESAL 108
F NL +IDN L+ FS FG+I S KV ++ G +S GYGFV + TQE+A
Sbjct: 97 FIKNLDKSIDNKALYDTFSAFGNILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAAE 156
Query: 109 NAIEKLYAATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
AI K+ + G +++ P ++ L + + +D T N+YVKN++
Sbjct: 157 KAIAKINGMLLNGKQVFVGPFVKKTE--------RLKILSNEDSFT------NIYVKNLD 202
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
VDE EL + FS+ G I + +MR G SK FGF+ F++ A AI+ +N F K
Sbjct: 203 ASVDEKELSEVFSKFGEIQNAVVMRGENGASKEFGFINFADHASALIAIDEMNEKDFKNK 262
Query: 228 PLYVAIAQTKRERTSYLRIMYAK 250
L+V AQ K ER + L+ + K
Sbjct: 263 KLFVGRAQKKNERRAKLKEYFQK 285
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 39/203 (19%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L I L +F + G I S ++ + KS GY +V + + A A++ L
Sbjct: 9 YVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAERALDTLN 68
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
A+V+G+ + PS+R I N+++KN++
Sbjct: 69 YASVKGIPIRIMWSQRDPSIRKSGI------------------------GNIFIKNLDKS 104
Query: 170 VDEIELKQYFSQCGIISSVKIMR-TNRG-------ISKGFGFVCFSNPDEANRAINTLNG 221
+D L FS G I S K+ + T +G S G+GFV F + A +AI +NG
Sbjct: 105 IDNKALYDTFSAFGNILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAAEKAIAKING 164
Query: 222 ILFHQKPLYVAIAQTKRERTSYL 244
+L + K ++V K ER L
Sbjct: 165 MLLNGKQVFVGPFVKKTERLKIL 187
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 20/101 (19%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
LYV ++++++ E L F + G I S++I R T + + G+ +V F NP +A RA++
Sbjct: 8 LYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSL--GYAYVNFQNPQDAERALD 65
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
TLN Y ++ + +RIM++++ P + +
Sbjct: 66 TLN---------YASV------KGIPIRIMWSQRDPSIRKS 91
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 14/230 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L ++FS++G I S+ V++ DGKS+ +GFV + + + A A+E+L
Sbjct: 304 FVKNLSESTTKEDLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNG 363
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
+ E Y GR Q+ + + + D ++ +NLY+KN++D + +
Sbjct: 364 KKINDKEWYV-----GRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDD 418
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G I+S KIMR G+SKG GFV FS +EA++A+ +NG + KPLYVA
Sbjct: 419 QLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAF 478
Query: 234 AQTKRERTSYLRIMYAKQGP----GLASTNFPVHPTLYQRALQVY--QAP 277
AQ K ER + L+ +++ P + P++P + Q++ QAP
Sbjct: 479 AQRKEERKAMLQAQFSQMRPVPMTPSMTPRLPMYPPMPTLGQQLFYGQAP 528
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN LH FS FG I S KV + G+SKG+GFVQY +ESA +A++ L
Sbjct: 213 FIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNG 272
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +Y P LR S A FNN++VKNL + T+E
Sbjct: 273 MLINDKPVYVGPFLRKQERDNSSDKAKFNNVFVKNLSESTTKE----------------- 315
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS+ G I+S +M G S+ FGFV F +PD+A RA+ LNG + K YV
Sbjct: 316 -DLIKVFSEYGTITSAVVMIGMDGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVG 374
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 375 RAQKKSEREMDLK 387
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 93/193 (48%), Gaps = 25/193 (12%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNA 110
PT + +L + + + +L+++FS+ G + S +V + + S GY +V YS A A
Sbjct: 120 PTTSLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARA 179
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNL---DDDVTEEILDKNLYVKNIN 167
+E L +AP NN ++ + D + N+++KN++
Sbjct: 180 MEALN---------FAP------------LNNKPIRVMYSNRDPSSRRSGSANIFIKNLD 218
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
+D L FS G I S K+ + G SKGFGFV + + A A+ +LNG+L + K
Sbjct: 219 KTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDK 278
Query: 228 PLYVAIAQTKRER 240
P+YV K+ER
Sbjct: 279 PVYVGPFLRKQER 291
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 19/102 (18%)
Query: 131 AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKI 190
G Q+ +LYV +L+ +VT D LY + FSQ G + SV++
Sbjct: 112 GGAAQQPLPTTSLYVGDLEANVT----DSQLY--------------ELFSQAGQVVSVRV 153
Query: 191 MR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
R N S G+ +V +SNP +A RA+ LN + KP+ V
Sbjct: 154 CRDVNSRRSLGYAYVNYSNPMDAARAMEALNFAPLNNKPIRV 195
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 117/200 (58%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL +F K+G I S KV++ DGKS+G+GFV + ++A A+ +L
Sbjct: 195 YVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNG 254
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
V EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 255 KEVAEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSID 308
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYV
Sbjct: 309 DERLRKEFAPFGTITSAKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 368 ALAQRKEDRKAHLASQYMQR 387
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+++
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ + +
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFGEDMTDDK 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV
Sbjct: 208 LKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGR 267
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 268 AQKKAERQQELK 279
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L D+TE +L + FS G + S+++ R T R +
Sbjct: 12 SLYVGDLHSDITEAMLFEK------------------FSSAGPVLSIRVCRDMITRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V F P +A RA++T+N + +P +RIM++++ P L
Sbjct: 53 -GYAYVNFQQPADAERALDTMNFDMIKGRP---------------IRIMWSQRDPSL 93
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 115/198 (58%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + ++F K+G++ S+ + V ++GKSKG+GFV + T + A A+++L
Sbjct: 233 YVKNLDPEVTQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELND 292
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
++G +L+ R Q+ A ++ + E++ NLY+KN+ DDVD+
Sbjct: 293 FELKGKKLFV-----SRAQKKAEREEELRRSYEQAKLEKLSKYQGVNLYIKNLEDDVDDD 347
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G I+S K+MR +G SKGFGFVCFS+PDEA +A+ +N + KPLYV++
Sbjct: 348 KLRAEFEPFGTITSCKVMRDEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 407
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 408 AQRREVRRQQLESQIAQR 425
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 100/200 (50%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG + S KV + G+SKGYGFV Y T E+A NAI+ +
Sbjct: 140 FIKNLDEAIDNKALHDTFAAFGTVLSCKVATDETGRSKGYGFVHYETAEAAENAIKAVNG 199
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y + R +++E A F NLYVKNLD + V
Sbjct: 200 MLLNDKKVYVGHHISRKERQSKLEEMRAQFTNLYVKNLDPE------------------V 241
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ E + F + G ++S I G SKGFGFV F DEA +A++ LN K L+
Sbjct: 242 TQDEFIELFKKYGNVTSAVISVDEEGKSKGFGFVNFETHDEAQKAVDELNDFELKGKKLF 301
Query: 231 VAIAQTKRERTSYLRIMYAK 250
V+ AQ K ER LR Y +
Sbjct: 302 VSRAQKKAEREEELRRSYEQ 321
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 23/207 (11%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYST 103
S + P+ + L T+ L +IF+ G + S + V +D +S GY +V Y
Sbjct: 42 SVASVPSASLYVGELDPTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLN 99
Query: 104 QESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYV 163
A+E+L + ++ R RI S D + N+++
Sbjct: 100 AADGERALEQLNYSLIKN--------RPCRIMWSQR----------DPALRKTGQGNIFI 141
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN+++ +D L F+ G + S K+ G SKG+GFV + + A AI +NG+L
Sbjct: 142 KNLDEAIDNKALHDTFAAFGTVLSCKVATDETGRSKGYGFVHYETAEAAENAIKAVNGML 201
Query: 224 FHQKPLYVAIAQTKRERTSYLRIMYAK 250
+ K +YV +++ER S L M A+
Sbjct: 202 LNDKKVYVGHHISRKERQSKLEEMRAQ 228
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 121/201 (60%), Gaps = 4/201 (1%)
Query: 50 ATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESAL 108
++P F V NL+ + N L Q+F+ FG I S K++ ++G SK +GFV + + +SA
Sbjct: 195 SSPKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAA 254
Query: 109 NAIEKLYAATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
A+EKL +T +G L+ RA + E + + + E+ NLY+KNI+
Sbjct: 255 TAVEKLNGSTTNDGKVLFVG--RAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNID 312
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
++E +LK+ FS+ G I+S K+M RG SKG GFV F+ P+EA++AI+ +NG + QK
Sbjct: 313 KSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQK 372
Query: 228 PLYVAIAQTKRERTSYLRIMY 248
P+YV++AQ K ER + L+ +
Sbjct: 373 PVYVSVAQRKEERKAQLQAHF 393
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 107/196 (54%), Gaps = 19/196 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN LH+ FS FG++ S KV + +G SKG+GFVQ+ +SA NAIEKL
Sbjct: 116 FIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDG 175
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++Y + + S F N+YVKNL + T E +LK
Sbjct: 176 RLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLSESYTNE------------------DLK 217
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYVAIAQ 235
Q F+ G+I+SVKIM+ G SK FGFV F + D A A+ LNG + K L+V AQ
Sbjct: 218 QLFNTFGVITSVKIMKDENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQ 277
Query: 236 TKRERTSYLRIMYAKQ 251
K ER + L+ + ++
Sbjct: 278 KKSEREAELKAFFEQE 293
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK-GYGFVQYSTQESALNAIEKLY 115
+ +L +++ +L+ +FS+ + S +V Q +S GYG+V YS A NA+E L
Sbjct: 28 YVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENLN 87
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + RI S D + + NL++KN+ +D L
Sbjct: 88 YVPLNGKPI--------RIMFSHR----------DPLIRKTGFANLFIKNLETSIDNKAL 129
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G + S K+ + G SKG GFV F N A AI L+G L + K +YV
Sbjct: 130 HETFSVFGNVLSCKVAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFV 189
Query: 236 TKRERTS 242
+ER+S
Sbjct: 190 RCQERSS 196
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 16/104 (15%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRAI 216
+ +LYV ++ +V++ +L FSQ + SV++ R S G+G+V +SN +A A+
Sbjct: 24 NSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAM 83
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
LN + + KP +RIM++ + P + T F
Sbjct: 84 ENLNYVPLNGKP---------------IRIMFSHRDPLIRKTGF 112
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 127/235 (54%), Gaps = 21/235 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F K+G I S KV+ +DG S+G+GFV + ++A A +L
Sbjct: 195 YVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNG 254
Query: 117 AT-VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
VEG LY GR Q+ A + + +E + NLYVKN++D +D+
Sbjct: 255 KELVEGKPLYV-----GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 309
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F+ G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 310 ERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 368
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPN 287
+AQ K +R ++L Y ++ +AS Q+ Q++Q PG G +P
Sbjct: 369 LAQRKEDRKAHLTSQYMQR---MASMRM-------QQMGQIFQ-PGGTGGYFVPT 412
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 104/191 (54%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +IEK
Sbjct: 102 FIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK--- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L + GR + K + ++ E+ L N+YVKN +D + L
Sbjct: 159 --VNGMLLNGKKVYVGRF--------IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 208
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIA 234
++ F + G I+S K+M G S+GFGFV F +PD A RA LNG L KPLYV A
Sbjct: 209 REMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRA 268
Query: 235 QTKRERTSYLR 245
Q K ER L+
Sbjct: 269 QKKAERQKELK 279
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A+E +
Sbjct: 14 YVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ +D +
Sbjct: 74 FDIIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKTIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV F + AN++I +NG+L + K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 132/246 (53%), Gaps = 25/246 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F K+G I S KV+ +DG S+G+GFV + ++A A +L
Sbjct: 195 YVKNFGEDFSDEMLREMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNG 254
Query: 117 AT-VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
VEG LY GR Q+ A + + +E + NLYVKN++D +D+
Sbjct: 255 KELVEGKPLYV-----GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 309
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F+ G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 310 ERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 368
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
+AQ K +R ++L Y ++ +AS Q+ Q++Q PG G +P +
Sbjct: 369 LAQRKEDRKAHLTSQYMQR---MASMRM-------QQMGQIFQ-PGGTGGYFVP----TI 413
Query: 293 PPSPLF 298
PP+ F
Sbjct: 414 PPAQRF 419
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 104/191 (54%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN ++ F+ FG+I S KV + G SKGYGFV + T+E+A +IEK
Sbjct: 102 FIKNLDKTIDNKAMYDTFTAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK--- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L + GR + K + ++ E+ L N+YVKN +D + L
Sbjct: 159 --VNGMLLNGKKVYVGRF--------IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 208
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIA 234
++ F + G I+S K+M G S+GFGFV F +PD A RA LNG L KPLYV A
Sbjct: 209 REMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRA 268
Query: 235 QTKRERTSYLR 245
Q K ER L+
Sbjct: 269 QKKAERQKELK 279
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A+E +
Sbjct: 14 YVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ +D +
Sbjct: 74 FDIIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKTIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F+ G I S K+ + G SKG+GFV F + AN++I +NG+L + K +YV
Sbjct: 116 YDTFTAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 113/191 (59%), Gaps = 11/191 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 292 YIKNFGDDMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 351
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G L+ GR Q+ + +K + + + +E + LY+KN++D +D+
Sbjct: 352 KDINGQLLFV-----GRAQKKSE-RQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDD 405
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS G IS VKIMR G SKGFG +CFS+P+EA +A+ +NG + KPLY+A
Sbjct: 406 EKLWREFSSFGSISRVKIMREE-GRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIA 464
Query: 233 IAQTKRERTSY 243
+AQ ER +Y
Sbjct: 465 LAQKPXERNAY 475
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 111/194 (57%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D S+GY FV + Q +A AIE++
Sbjct: 200 FIKNLDRSIDNKTLYEHFSAFGKILSSKVM-SDDQGSRGYAFVHFQNQIAADRAIEEMNG 258
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A ++ L+ + + +E+ ++N ++ T N+Y+KN DD+D+ LK
Sbjct: 259 ALLKDCRLFVGRFKNRKDREAE------LRNKANEFT------NVYIKNFGDDMDDERLK 306
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + L+V AQ
Sbjct: 307 EVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQK 366
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ ++ +
Sbjct: 367 KSERQAELKQVFEQ 380
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 26/180 (14%)
Query: 70 LHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL-Y 125
L + FS G + S ++ +V++ +S GY +V + A A++ + T++G +
Sbjct: 125 LFKKFSTVGPVLSIRICRDLVTR--RSLGYAYVNFLKLADAQRALDTMNFDTIKGKPIRL 182
Query: 126 APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGII 185
S R +++S N+++KNLD I +K LY ++FS G I
Sbjct: 183 MWSQRDAYLRKSG-IGNVFIKNLD----RSIDNKTLY--------------EHFSAFGKI 223
Query: 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
S K+M ++G S+G+ FV F N A+RAI +NG L L+V + +++R + LR
Sbjct: 224 LSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELR 282
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 117/200 (58%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL +F K+G I S KV++ DGKS+G+GFV + ++A A+ +L
Sbjct: 195 YVKNFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNG 254
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
V EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 255 KEVAEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSID 308
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYV
Sbjct: 309 DERLRKEFAPFGTITSAKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 368 ALAQRKEDRKAHLASQYMQR 387
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+++
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ + +
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFGEDMTDDK 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV
Sbjct: 208 LKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGR 267
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 268 AQKKAERQQELK 279
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L D+TE +L + FS G + S+++ R T R +
Sbjct: 12 SLYVGDLHSDITEAMLFEK------------------FSSAGPVLSIRVCRDMITRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V F P +A RA++T+N + +P +RIM++++ P L
Sbjct: 53 -GYAYVNFQQPADAERALDTMNFDMIKGRP---------------IRIMWSQRDPSL 93
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 116/197 (58%), Gaps = 12/197 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N + + KL +F K+G I S KV++ DGKS+G+GFV + ++A A+ +L V
Sbjct: 169 NFGEDMTDDKLKDMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 228
Query: 120 -EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIE 174
EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D+
Sbjct: 229 AEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKLERLNRYQGVNLYVKNLDDSIDDER 282
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYVA+A
Sbjct: 283 LRKEFAPFGTITSAKVM-MEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALA 341
Query: 235 QTKRERTSYLRIMYAKQ 251
Q K +R ++L Y ++
Sbjct: 342 QRKEDRKAHLASQYMQR 358
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 89/190 (46%), Gaps = 42/190 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+++
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNG 161
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G KN +D+ + +LK
Sbjct: 162 MLLNGK-----------------------------------------KNFGEDMTDDKLK 180
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIAQ 235
F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV AQ
Sbjct: 181 DMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 240
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 241 KKAERQQELK 250
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 19/172 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGK 167
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +ID+ +L + F+ FG I S+KV++ ++G+SKG+GFV +S E A A+ ++
Sbjct: 270 YVKNLDDSIDDERLRKEFAPFGTITSAKVMM-EEGRSKGFGFVCFSAPEEATKAVTEMNG 328
Query: 117 ATVEGMELY 125
+ LY
Sbjct: 329 RIIVTKPLY 337
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ P L
Sbjct: 70 DTMNFDMIKGRP---------------IRIMWSQRDPSL 93
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 111/191 (58%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + K ++F++FG I S+ + DGK KG+GFV Y E A+ A+E L
Sbjct: 222 YVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNE 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ + G +LY GR Q+ ++ K + E++ NL+VKN++D VD+
Sbjct: 282 SDLNGEKLYV-----GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+MR+ G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 337 KLEEEFAPYGTITSAKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 397 AQRKDVRRSQL 407
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 110/220 (50%), Gaps = 23/220 (10%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
RLC + + D I F NL IDN L+ FS FGDI SSK+ ++GKS
Sbjct: 107 RLCRIMWSQRDPSLRKKGSGNI-FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKS 165
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSL----RAGRIQESASFNNLYVKNL 148
KG+GFV + + +A AI+ L + G E+Y AP L R +++E+ +
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT------ 219
Query: 149 DDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSN 208
NLYVKNIN + + + ++ F+Q G I S + + G KGFGFV + N
Sbjct: 220 -----------NLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDADGKLKGFGFVNYEN 268
Query: 209 PDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
++A +A+ LN + + LYV AQ K ER L+ Y
Sbjct: 269 HEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQY 308
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ +L T+ L+ IFS G + S + V +D +K GY +V ++ E+ AI++
Sbjct: 41 YVGDLEPTVSEAHLYDIFSPIGSV--SSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIDQ 98
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S +L K N+++KN++ D+D
Sbjct: 99 LNYTPIKG--------RLCRIMWSQRDPSLRKKG----------SGNIFIKNLHPDIDNK 140
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G SKGFGFV F A AI+ LNG+L + + +YVA
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 234 AQTKRERTSYLR 245
+++ER S L
Sbjct: 201 HLSRKERDSQLE 212
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 156/329 (47%), Gaps = 51/329 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + +L+ +F +G I S V+ + DG SKG+GF+ + ESA A+ ++
Sbjct: 196 YVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEKAVTEMNN 255
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-------NLYVKNINDD 169
+ G LY GR Q+ + +K L + L++ N+Y+KN++D
Sbjct: 256 YELNGTNLYV-----GRAQKKSE----RIKELKKCYEQMKLERYNRIQGANVYIKNLDDT 306
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
D L++ FSQ G I+S K+M T G SKGFGFVCFS P+EA++AI ++G + KP+
Sbjct: 307 FDNDRLRKEFSQFGAITSAKVM-TEGGRSKGFGFVCFSTPEEASKAITEMDGRMIGSKPI 365
Query: 230 YVAIAQTKRERTSYL------RIMYAKQGPGLASTNF--PVHPTLYQRALQVYQAPGFRH 281
YVA+AQ +R +YL RI + P L + F P P Y Q+ P R
Sbjct: 366 YVALAQRYEDRRAYLSAQCMQRIRHQTMSPPLTTPQFLIPTLPRFYNHMAQIRPTP--RW 423
Query: 282 GGMIP--NG-FSSP--PPSPLFLTRAGQAAANN----LTNGNQRAAANNSMLAVASPD-- 330
+P NG ++ P P +P T Q N +T A NS ++P
Sbjct: 424 TAQVPRLNGTYNMPLLPATPYRSTSRPQVQINRSARPITGQQVPIARPNSKYTASAPPRG 483
Query: 331 -------------ERKDILGQGLYPLVKK 346
+ K +LG+ +Y +++K
Sbjct: 484 VSVGVGNGGDPGADDKRMLGERMYRVIEK 512
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 100/200 (50%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV + DG SKGYGFV + + E+A AIEK+
Sbjct: 103 FIKNLDKSIDNKAMYDTFSAFGNILSCKVAIDDDGVSKGYGFVHFESIEAANKAIEKVNG 162
Query: 117 ATVEGMELYAPSL--RAGRIQE----SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G ++Y RA R +E S + N+YVKN ++T+E
Sbjct: 163 MLLNGKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLTQE--------------- 207
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+L F G I+S +M G SKGFGF+ F P+ A +A+ +N + LY
Sbjct: 208 ---QLYDLFKNYGTITSCVVMANPDGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNLY 264
Query: 231 VAIAQTKRERTSYLRIMYAK 250
V AQ K ER L+ Y +
Sbjct: 265 VGRAQKKSERIKELKKCYEQ 284
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 33/180 (18%)
Query: 70 LHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA-- 126
L++ FS G I S +V S+ +S GY +V +S A ++ + ++G +
Sbjct: 28 LYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDTMNFDLLKGKPIRIMW 87
Query: 127 ----PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
PSLR I N+++KN++ +D + FS
Sbjct: 88 SQRDPSLRKSGI------------------------GNVFIKNLDKSIDNKAMYDTFSAF 123
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA--IAQTKRER 240
G I S K+ + G+SKG+GFV F + + AN+AI +NG+L + K +YV I + +RE+
Sbjct: 124 GNILSCKVAIDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREK 183
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 34/117 (29%)
Query: 140 FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI-S 198
+LYV +L DVTE + LY K FS G I S+++ R +R S
Sbjct: 11 LTSLYVGDLHPDVTEAL----LYEK--------------FSPAGQILSLRVCRDSRTKQS 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V FS EA R ++T+N L KP +RIM++++ P L
Sbjct: 53 LGYAYVNFSQTIEAERVLDTMNFDLLKGKP---------------IRIMWSQRDPSL 94
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 136/288 (47%), Gaps = 55/288 (19%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+A + + Q+F KFGD+ SS + Q+GK++G+GFV ++T E+A A+E+L
Sbjct: 243 YVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAVEELNG 302
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN++DDVD+
Sbjct: 303 KDFRGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 357
Query: 174 ELKQYFSQCGIISSVKIMR----------------------------------------- 192
+L+Q F++ G I+S K+MR
Sbjct: 358 KLRQMFAEFGPITSAKVMRDVPQEGEEEAKDQEKDKENQKEGEKEGESAEGAEKKTEKKS 417
Query: 193 -TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
G SKGFGFVCFSNPD+A +A+ +N + + KPLYVA+AQ K R S L +
Sbjct: 418 DKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQAR 477
Query: 252 GPGLASTNFPVHPTLYQRALQ--VYQAPGFRHGGMIPNGFSSPP-PSP 296
L + Q+ +Q V+ APG + G IP G P P P
Sbjct: 478 N-QLRMQQAAAAAGMPQQYMQPPVFYAPG-QQPGFIPQGGRGIPFPQP 523
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+
Sbjct: 150 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKH--- 206
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L E + ++ D E + N+YVKNI DV +
Sbjct: 207 --VNGMLL----------NEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIAPDVTDE 254
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ +Q F + G ++S + R G ++GFGFV F+ + A +A+ LNG F + LYV
Sbjct: 255 DFRQLFEKFGDVTSSSLARDQEGKTRGFGFVNFTTHEAAFKAVEELNGKDFRGQDLYVGR 314
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 315 AQKKHEREEELRKSY 329
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 38/242 (15%)
Query: 26 DLDSTDLLRLCSALIASIDV-------HSAMATPTFIPFTVNLAS--------TIDNWKL 70
DL++T L +ID ++ TPT P N AS ++ L
Sbjct: 16 DLNNTSLNGSGDVKAPAIDTSVSAGAEDASAPTPTAAPHPQNSASLYVGELDPSVTEAML 75
Query: 71 HQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
++FS+ G + S + V +D +S GY +V Y++ A+E+L ++G
Sbjct: 76 FELFSQIGAVAS--IRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELNYTLIKG------ 127
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS 187
R RI S D + N+++KN++ +D L F+ G I S
Sbjct: 128 --RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILS 175
Query: 188 VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIM 247
K+ + G SKG+GFV + + A +AI +NG+L ++K +YV K++R S M
Sbjct: 176 CKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEM 235
Query: 248 YA 249
A
Sbjct: 236 KA 237
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 161/356 (45%), Gaps = 70/356 (19%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F+KFG I S + +DGKSKG+GFV + A A+++L+
Sbjct: 230 YAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHD 289
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +G +L+ RA + E + ++ + NLY+KNI + D+ L+
Sbjct: 290 SDFKGQKLFV--ARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLR 347
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F+ G I+S KIMR G+S+GFGFVC+S P+EAN+A++ +NG + +PLYVA+AQ
Sbjct: 348 EEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQR 407
Query: 237 KRERTSYL--RIMYAKQ---------------GPGL---ASTNFPVHP------TLYQRA 270
K R L +IM Q GPG+ FP P Y A
Sbjct: 408 KDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAFPGQPGGMVPRPRYAPA 467
Query: 271 --------LQVYQAPGFRHGGMIPNGF--SSPP-------------------------PS 295
+ Y PG GM+P G+ + PP P
Sbjct: 468 GMMPQGMPMAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPTGVNGAPR 527
Query: 296 PLFLTRAGQ-------AAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLV 344
P GQ A +Q A + LA ASP+E+K +LG+ +YP V
Sbjct: 528 PAGQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKV 583
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 106/198 (53%), Gaps = 25/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV ++ G S GYGFV Y T E+A AI+ +
Sbjct: 138 FIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNG 196
Query: 117 ATVEGMELYAP-----SLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +I+E+ A+F N+Y KN+D +VT++
Sbjct: 197 MLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDD--------------- 241
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E ++ F++ G I+S + R G SKGFGFV F + +EA +A++ L+ F + L+
Sbjct: 242 ---EFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLF 298
Query: 231 VAIAQTKRERTSYLRIMY 248
VA AQ K ER LR Y
Sbjct: 299 VARAQKKSEREEELRRSY 316
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IFS G + S + V +D +S GY +V + A+E+
Sbjct: 50 YVGELDPSVTEAMLFEIFSMIGTVAS--IRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + + R RI S D N+++KN++ +D
Sbjct: 108 LNYSLIRN--------RPCRIMWSQR----------DPALRRTGQGNIFIKNLDAGIDNK 149
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ TN S G+GFV + + A AI +NG+L + K +YV
Sbjct: 150 ALHDTFAAFGNILSCKVA-TNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGH 208
Query: 234 AQTKRERTSYL 244
++ER + +
Sbjct: 209 HIPRKERQAKI 219
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 38/126 (30%)
Query: 136 ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--- 192
++A+ +LYV LD VTE +L E+ FS G ++S+++ R
Sbjct: 42 DAANNTSLYVGELDPSVTEAML---------------FEI---FSMIGTVASIRVCRDAV 83
Query: 193 TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQG 252
T R + G+ +V F N + RA+ LN L +P RIM++++
Sbjct: 84 TRRSL--GYAYVNFLNAADGERAMEQLNYSLIRNRP---------------CRIMWSQRD 126
Query: 253 PGLAST 258
P L T
Sbjct: 127 PALRRT 132
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 121/214 (56%), Gaps = 12/214 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA + + L IF +FG I S+ V+ +GK KG+GFV + + A A+E L
Sbjct: 222 YVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLNG 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
T + E + GR Q+ S + +K + +E DK NLYVKN++D V +
Sbjct: 282 KTFDDKEWFV-----GRAQKK-SEREMELKVQYEQSLKEAADKFQSSNLYVKNLDDSVSD 335
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F+ G ++S K+MR G+S+G GFV FS P+EA +A++ ++G + KPLYVA
Sbjct: 336 EKLKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAMSEMSGKMIENKPLYVA 395
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
+AQ K +R + L+ +++ P + PV P +
Sbjct: 396 VAQRKEDRRARLQAQFSQMRP--VAMPPPVGPRM 427
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 106/195 (54%), Gaps = 16/195 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ LH FS FG+I S KV V G+SKGYGFVQY T+ESA A+ +L
Sbjct: 131 FIKNLDKSIDHKALHDTFSVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNG 190
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ ++Y P LR QE S N + + N+YVKN+ + + +L
Sbjct: 191 MLLNDKQVYVGPFLRR---QERDSTGN------------KTIFTNVYVKNLAESTTDDDL 235
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F + G I+S +M+ G KGFGFV F N D+A +A+ +LNG F K +V AQ
Sbjct: 236 KNIFGEFGKITSAVVMKDGEGKPKGFGFVNFENADDAAKAVESLNGKTFDDKEWFVGRAQ 295
Query: 236 TKRERTSYLRIMYAK 250
K ER L++ Y +
Sbjct: 296 KKSEREMELKVQYEQ 310
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 21/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L FS+ G + S +V +S GYG+V +++ + A AI++L
Sbjct: 43 YVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQELN 102
Query: 116 AATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G + S R ++ S + N+++KN++ +D
Sbjct: 103 YIPLNGKPVRVMYSHRDPSVRRSGA-------------------GNIFIKNLDKSIDHKA 143
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S K+ + G SKG+GFV + + A +A+ LNG+L + K +YV
Sbjct: 144 LHDTFSVFGNIISCKVAVDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPF 203
Query: 235 QTKRERTS 242
++ER S
Sbjct: 204 LRRQERDS 211
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V + +L FSQ G + SV++ R T R + G+G+V F++P +A RAI
Sbjct: 41 SLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSL--GYGYVNFTSPQDAARAI 98
Query: 217 NTLNGILFHQKPLYV 231
LN I + KP+ V
Sbjct: 99 QELNYIPLNGKPVRV 113
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 112/180 (62%), Gaps = 16/180 (8%)
Query: 92 KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLY---VKNL 148
+ +G+ FV + T E A A+E L GMEL +L GR Q+ A + ++ L
Sbjct: 467 RPRGFAFVNFETPEQAAAAVEAL-----NGMELNGKTLYVGRAQKKAEREAMLRAQMEQL 521
Query: 149 DDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSN 208
+D +++ D NL+VKN++DDVDE L++ FS+ G I+S++IMR +G+SKGFGFV FS+
Sbjct: 522 RNDRMQKLQDVNLFVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSH 581
Query: 209 PDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR-----IMYAKQG---PGLASTNF 260
PDEA +A+ +N + QKP+YVA+AQ K +R + + +M A+ PGLA++ +
Sbjct: 582 PDEAIKAVTEMNQRIVGQKPIYVALAQRKDQRRAQIEAQRAAMMRAQMSFLPPGLAASMY 641
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG + S K+ G S GY FV Y A I K+
Sbjct: 270 FIKNLDKSIDNKALYDTFSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNG 329
Query: 117 ATVEGMELYAPSLRAGRIQE-----SASFNNLYVKNLDDDV--TEEI 156
+ G ++Y R R +E S F N+YVKNLD+ + TEE+
Sbjct: 330 MLLNGQKVYVGEFRPRREREATGELSTKFTNVYVKNLDESLCTTEEV 376
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 20/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + L ++FS G + S +V VV++ +S GY +V + E A AI+
Sbjct: 179 YVGDLQPDVVEQNLFELFSSVGPVVSVRVCRDVVTR--RSLGYAYVNFQNPEDAERAIDV 236
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + Y G + ++ ++ ++ D + N+++KN++ +D
Sbjct: 237 L--------QFYE-----GPLTKNKPIRIMWKRS--DPSQRRNPEGNIFIKNLDKSIDNK 281
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G + S K+ ++G S G+ FV + + + A I+ +NG+L + + +YV
Sbjct: 282 ALYDTFSTFGKVLSCKLATDDKGNSLGYAFVHYQDANVAKYVISKMNGMLLNGQKVYVGE 341
Query: 234 AQTKRER 240
+ +RER
Sbjct: 342 FRPRRER 348
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114
F NL+ +D +L + FS+FG I S +++ + G SKG+GFV +S + A+ A+ ++
Sbjct: 535 FVKNLSDDVDENRLREEFSRFGTITSLRIMRDEKGVSKGFGFVAFSHPDEAIKAVTEM 592
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FS++G S KV+ G+S+G+GFV + + E+A A+E L
Sbjct: 331 YIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDASGRSRGFGFVSFESHEAARRAVEALNG 390
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V+G L+ RA R E + + D LYVKN++D VDE L+
Sbjct: 391 RQVDGQPLFVG--RAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKNLDDAVDEDRLR 448
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G +S VKIMR G SKGFG +CFS+ DEA RA+ +NG + KPL +A+AQ+
Sbjct: 449 REFSGFGAVSRVKIMREE-GRSKGFGLICFSSADEAARALAEMNGRVLGSKPLSIALAQS 507
Query: 237 KR 238
+R
Sbjct: 508 RR 509
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 103/195 (52%), Gaps = 13/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++D+ L + FS FG I SSKVV + G S+GY FV + Q +A AIE +
Sbjct: 239 FIKNLDRSVDDKALFERFSAFGKILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHMNG 297
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A + G L+ GR Q S +++ + T NLY+KN +D+ L+
Sbjct: 298 AQLRGCRLFV-----GRFQ-SRQAREAELRSRAGEFT------NLYIKNFGGRMDDARLR 345
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M G S+GFGFV F + + A RA+ LNG +PL+V AQ
Sbjct: 346 AVFSEYGKTLSVKVMTDASGRSRGFGFVSFESHEAARRAVEALNGRQVDGQPLFVGRAQR 405
Query: 237 KRERTSYLRIMYAKQ 251
K ER + LR + ++
Sbjct: 406 KAERQAELRRAFEQR 420
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ VD+ L + FS G I S K++ RG S+G+ FV F A+RAI +
Sbjct: 237 NVFIKNLDRSVDDKALFERFSAFGKILSSKVVSDERG-SRGYAFVHFQEQSAADRAIEHM 295
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L+V Q+++ R + LR
Sbjct: 296 NGAQLRGCRLFVGRFQSRQAREAELR 321
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 151 DVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFS 207
+V + +LYV +++ +V E L + FS G + S++I R T R + G+ +V F
Sbjct: 140 NVAAKYRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSL--GYAYVNFL 197
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
+A RA++T+N + +PL + +Q R ++LR
Sbjct: 198 RLADAQRALDTMNFDVLRGRPLRLMWSQ----RDAHLR 231
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 113/199 (56%), Gaps = 9/199 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F+KFG+I S +V+ +GKSKG+GFV ++ E A A++ L+
Sbjct: 156 YVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQALHD 214
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+T+EG +L RA + S + +K + E + K NLYVKN+++ VD+
Sbjct: 215 STIEGTDLKLHVCRA----QKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDD 270
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA
Sbjct: 271 DGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 330
Query: 233 IAQTKRERTSYLRIMYAKQ 251
IAQ K +R + L Y ++
Sbjct: 331 IAQRKEDRRAQLASQYMQR 349
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 19/207 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ L + FS G + S +V + S GY +V + A A++ +
Sbjct: 35 YVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMN 94
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---------------N 160
+ G + + + N+++KNLD + + N
Sbjct: 95 FEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVFVGKFQPRAQRNRELGETAKQFTN 154
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+YVKN D ++ L++ F++ G I+S ++M T G SKGFGFV F+NP+EA A+ L+
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALH 213
Query: 221 GILFHQK--PLYVAIAQTKRERTSYLR 245
L+V AQ K ER + L+
Sbjct: 214 DSTIEGTDLKLHVCRAQKKSERHAELK 240
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
+LYV +++ DV+E L + FS G + S+++ R N +S G+ +V F P +A RA++T
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 219 LNGILFHQKPLYVAIAQ 235
+N H KP+ + +Q
Sbjct: 93 MNFEALHGKPMRIMWSQ 109
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 117/203 (57%), Gaps = 11/203 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ GKS+G+GFV Y E A A++++
Sbjct: 95 YIKNFGEEVDDGNLKELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEM-- 152
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G E+ ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 153 ---NGKEMSGKAIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 208
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCF + +EA +A+ +NG + KPLYVA
Sbjct: 209 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFPSREEATKAVTEMNGRIVGSKPLYVA 267
Query: 233 IAQTKRERTSYLRIMYAKQGPGL 255
+AQ K ER ++L Y + GL
Sbjct: 268 LAQRKEERKAHLTNQYMQHVAGL 290
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 3 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 61
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 62 LLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDGNLK 109
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR + G S+GFGFV + ++AN+A++ +NG K ++V AQ
Sbjct: 110 ELFSQFGKTLSVKVMRDSSGKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQK 169
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 170 KVERQAELK 178
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 115/205 (56%), Gaps = 6/205 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +++ +L ++F K+G S KV+ +GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KDMNGKSMFV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFP 261
K ER ++L Y ++ +AS P
Sbjct: 371 KEERQAHLTNQYMQR---MASVRVP 392
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AI+K+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+++ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGDDMNDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M + G SKGFGFV F ++A +A++ +NG + K ++V AQ
Sbjct: 209 EMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G R RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKG--------RPVRIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI+ +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 115/205 (56%), Gaps = 6/205 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +++ +L ++F K+G S KV+ +GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KDMNGKSMFV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFP 261
K ER ++L Y ++ +AS P
Sbjct: 371 KEERQAHLTNQYMQR---MASVRVP 392
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AI+K+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+++ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGDDMNDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M + G SKGFGFV F ++A +A++ +NG + K ++V AQ
Sbjct: 209 EMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G R RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKG--------RPVRIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI+ +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 110/180 (61%), Gaps = 11/180 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N + ID+ KL F FG I S+KV+ DGK +G+GFV Y E+A A+ ++ T
Sbjct: 113 NFSEEIDDEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTF 172
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIEL 175
E LY GR Q+ A +K+ D + +E +++ NLYVKN++D +D+ +L
Sbjct: 173 EEKTLYV-----GRAQKRAE-RQAELKDKFDRLKQERMNRYQGVNLYVKNLDDSIDDEKL 226
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 227 RKEFSAFGTITSAKVM-TEGGRSKGFGFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQ 285
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 105/194 (54%), Gaps = 23/194 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S K+V + G S+GYGFV + T+E+A NAIEK
Sbjct: 18 FIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHG-SRGYGFVHFETEEAARNAIEK--- 73
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-----NLYVKNINDDVD 171
V GM L + GR + E++ DK N+Y+KN ++++D
Sbjct: 74 --VNGMLLNGKKVFVGRFMNRR------------ERLEQMGDKMKKFNNVYIKNFSEEID 119
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ +LK +F G I S K+M G +GFGFV + P+ A +A+ +N F +K LYV
Sbjct: 120 DEKLKIWFETFGKIISAKVMTGYDGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYV 179
Query: 232 AIAQTKRERTSYLR 245
AQ + ER + L+
Sbjct: 180 GRAQKRAERQAELK 193
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +ID+ KL + FS FG I S+K V+++ G+SKG+GFV +S+ E A A+ ++
Sbjct: 213 YVKNLDDSIDDEKLRKEFSAFGTITSAK-VMTEGGRSKGFGFVCFSSPEEATKAVTEMNG 271
Query: 117 ATVEGMELY 125
+ LY
Sbjct: 272 RIIVAKPLY 280
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 106/193 (54%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH FS FG+I S KV G+S+GYGFVQ+ +ESA +AI+KL
Sbjct: 131 FIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNG 190
Query: 117 ATVEGMELY-APSLRAGRIQESAS---FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ P LR + +A FNN+YVKNL + TE+
Sbjct: 191 MLLNDKQVFVGPFLRKQERESTADKTRFNNVYVKNLSETTTED----------------- 233
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F + GII+S +MR G SK FGFV F +PD+A R++ LNG F K YV
Sbjct: 234 -DLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVG 292
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 293 KAQKKYEREMELK 305
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 120/214 (56%), Gaps = 11/214 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ T L +IF +FG I S+ V+ DGKSK +GFV + + A ++E L
Sbjct: 222 YVKNLSETTTEDDLKKIFGEFGIITSTAVMRDADGKSKCFGFVNFDDPDDAARSVEALNG 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ + +K + +E DK NLYVKN++D + +
Sbjct: 282 KKFDDKEWYV-----GKAQKKYE-REMELKGKFEQSLKETADKFEGLNLYVKNLDDSISD 335
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS+ G I+S K+MR GIS+G GFV FS +EA++A+ +NG + KPLYVA
Sbjct: 336 DKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVA 395
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
+AQ K ER + L+ +++ P + P++P +
Sbjct: 396 LAQRKEERRARLQAQFSQMRPPVGP-RMPMYPPV 428
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 21/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L ++++ +L+ +F++ G + S +V +S GYG+V Y+ A A+++L
Sbjct: 43 YVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDELN 102
Query: 116 AATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G + S R I++S + N+++KN++ +D
Sbjct: 103 FTPLNGKPIRIMYSYRDPTIRKSGA-------------------GNIFIKNLDKSIDNKA 143
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S K+ + G S+G+GFV F N + A AI+ LNG+L + K ++V
Sbjct: 144 LHDTFSTFGNILSCKVATDSLGQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPF 203
Query: 235 QTKRERTS 242
K+ER S
Sbjct: 204 LRKQERES 211
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 20/102 (19%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDE 211
+ + +LYV +++ V++ +L F+Q G + SV++ R T R + G+G+V ++ E
Sbjct: 36 QFVSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSL--GYGYVNYNAAHE 93
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
A RA++ LN + KP +RIMY+ + P
Sbjct: 94 ATRALDELNFTPLNGKP---------------IRIMYSYRDP 120
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 119/201 (59%), Gaps = 10/201 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L +IF ++G+I S+ V+ DGKSK +GFV + E A A+++L
Sbjct: 50 FVKNLSESTTEDNLLEIFGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKELNG 109
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN----LYVKNINDDVDE 172
+G E Y G+ Q+ + + +K + +E DKN LY+KN++D + +
Sbjct: 110 KKFDGKEWYV-----GKAQKKSE-REMELKGRFEQRMQEAADKNQGANLYLKNLDDSIGD 163
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS+ G I+S K+MR G+S+G GFV F +PD+A++A+ +NG + KPLYVA
Sbjct: 164 DKLRELFSEFGSITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVA 223
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K +R + L+ +++ P
Sbjct: 224 LAQRKEDRRARLQAQFSQMRP 244
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 22/146 (15%)
Query: 104 QESALNAIEKLYAATVEGMELY-APSLRAGRIQESAS---FNNLYVKNLDDDVTEEILDK 159
+E+A NAIEKL + +++ P LR + +A+ FNN++VKNL + TE
Sbjct: 6 EEAAHNAIEKLNGMLLNDKKVFVGPFLRKQDRENTANSTKFNNVFVKNLSESTTE----- 60
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
D++ EI F + G I+S +MR G SK FGFV F +P+ A +A+ L
Sbjct: 61 --------DNLLEI-----FGEYGNITSAVVMREGDGKSKCFGFVNFEDPEHAAKAVKEL 107
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG F K YV AQ K ER L+
Sbjct: 108 NGKKFDGKEWYVGKAQKKSEREMELK 133
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL ++F K+G I S KV+ DGKS+G+GFV + ++A A+ +L
Sbjct: 195 YVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNG 254
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 255 KDISEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTID 308
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYV
Sbjct: 309 DERLRKEFTPFGTITSAKVM-MEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 367
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 368 ALAQRKEDRKAHLASQYMQR 387
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ + +
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFGEDMTDDK 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK+ F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV
Sbjct: 208 LKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYVGR 267
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 268 AQKKAERQQELK 279
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV F + AN++I+ +NG+L + K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 28/258 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L ++F ++G I S+ V++ DGKS+ +GF+ + ++A A+++L
Sbjct: 228 FVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNG 287
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y GR Q+ S + +K + ++ DK NLY+KN++D + +
Sbjct: 288 KKINDKEWYV-----GRAQKK-SEREMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGD 341
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+MR G+SKG GFV FS +EA++A+ +NG + KPLYVA
Sbjct: 342 DQLRELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 401
Query: 233 IAQTKRERTSYLRIMYAKQGPGLAST-----NFPVHPTLYQRALQVYQAP---------- 277
AQ K +R + L+ +++ P + T P++P + + L QAP
Sbjct: 402 FAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMAPQQLFYGQAPPAMIPPQPGF 461
Query: 278 GFRHG---GMIPNGFSSP 292
GF+ GM P G P
Sbjct: 462 GFQQQLVPGMRPGGPHMP 479
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN LH+ FS FG I S KV + + G+SKG+GFVQY +E+A NAI+ L
Sbjct: 137 FIKNLDKTIDNKTLHETFSSFGTILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNG 196
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++ P LR S FNN++VKNL + T+E
Sbjct: 197 MLINDKPVFVGPFLRKQERDHSFDKTKFNNVFVKNLSESTTKE----------------- 239
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + F + G I+S +M G S+ FGF+ F NPD A+RA+ LNG + K YV
Sbjct: 240 -DLLKVFGEYGSITSAVVMIGMDGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVG 298
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 299 RAQKKSEREMELK 311
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 29/195 (14%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESAL 108
PT + +L ++ + +L+++FS+ G + S +V V S+ +S GY +V +S A
Sbjct: 44 PTTSLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSR--RSLGYAYVNFSNPLDAA 101
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNL---DDDVTEEILDKNLYVKN 165
A+E L A + NN ++ + D + N+++KN
Sbjct: 102 RALEVLNFAVL---------------------NNKPIRVMYSNRDPSSRRSGSANIFIKN 140
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L + FS G I S K+ G SKGFGFV + + A AI +LNG+L +
Sbjct: 141 LDKTIDNKTLHETFSSFGTILSCKVAMDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLIN 200
Query: 226 QKPLYVAIAQTKRER 240
KP++V K+ER
Sbjct: 201 DKPVFVGPFLRKQER 215
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 113/199 (56%), Gaps = 9/199 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F+KFG+I S +V+ +GKSKG+GFV ++ E A A++ L+
Sbjct: 216 YVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+T+EG +L RA + S + +K + E + K NLYVKN+++ VD+
Sbjct: 275 STIEGTDLKLHVCRA----QKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDD 330
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA
Sbjct: 331 DGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 390
Query: 233 IAQTKRERTSYLRIMYAKQ 251
IAQ K +R + L Y ++
Sbjct: 391 IAQRKEDRRAQLASQYMQR 409
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 106/191 (55%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + +DG SKGYGFV + T+E+A NAI+K
Sbjct: 123 FIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQK--- 179
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ Q A N + L + + N+YVKN D ++ L+
Sbjct: 180 --VNGMLLAGKKVFVGKFQPRAQRN----RELGETAKQFT---NVYVKNFGDHYNKETLE 230
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK--PLYVAIA 234
+ F++ G I+S ++M T G SKGFGFV F+NP+EA A+ L+ L+V A
Sbjct: 231 KLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRA 289
Query: 235 QTKRERTSYLR 245
Q K ER + L+
Sbjct: 290 QKKSERHAELK 300
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ G SKG+GFV F + A AI +
Sbjct: 121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKV 180
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
NG+L K ++V Q + +R L AKQ + NF H
Sbjct: 181 NGMLLAGKKVFVGKFQPRAQRNRELGET-AKQFTNVYVKNFGDH 223
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDEANRAINT 218
+LYV +++ DV+E L + FS G + S+++ R N +S G+ +V F P +A RA++T
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 219 LNGILFHQKPLYVAIAQ 235
+N H KP+ + +Q
Sbjct: 93 MNFEALHGKPMRIMWSQ 109
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 113/199 (56%), Gaps = 9/199 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F+KFG+I S +V+ +GKSKG+GFV ++ E A A++ L+
Sbjct: 153 YVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQALHD 211
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+T+EG +L RA + S + +K + E + K NLYVKN+++ VD+
Sbjct: 212 STIEGTDLKLHVCRA----QKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDD 267
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA
Sbjct: 268 DGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 327
Query: 233 IAQTKRERTSYLRIMYAKQ 251
IAQ K +R + L Y ++
Sbjct: 328 IAQRKEDRRAQLASQYMQR 346
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 106/191 (55%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + +DG SKGYGFV + T+E+A NAI+K
Sbjct: 60 FIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQK--- 116
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ Q A N + L + + N+YVKN D ++ L+
Sbjct: 117 --VNGMLLAGKKVFVGKFQPRAQRN----RELGETAKQFT---NVYVKNFGDHYNKETLE 167
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK--PLYVAIA 234
+ F++ G I+S ++M T G SKGFGFV F+NP+EA A+ L+ L+V A
Sbjct: 168 KLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRA 226
Query: 235 QTKRERTSYLR 245
Q K ER + L+
Sbjct: 227 QKKSERHAELK 237
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ G SKG+GFV F + A AI +
Sbjct: 58 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKV 117
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
NG+L K ++V Q + +R L AKQ + NF H
Sbjct: 118 NGMLLAGKKVFVGKFQPRAQRNRELGET-AKQFTNVYVKNFGDH 160
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 134 bits (336), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 105/198 (53%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV G+SKGYGFVQ+ +E+A NAI KL
Sbjct: 130 FIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNG 189
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y + +E+ S FNN+YVKNL + TE+
Sbjct: 190 MLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTED----------------- 232
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F + G I+SV +MR G S+ FGFV F NPD+A RA+ LNG F K YV
Sbjct: 233 -NLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVC 291
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER L+ + K
Sbjct: 292 RAQKKSEREMELKEKFEK 309
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 119/218 (54%), Gaps = 17/218 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + L +IF KFG I S V+ DGKS+ +GFV + + A A+E L
Sbjct: 221 YVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNG 280
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKN----LYVKNINDDVD 171
+ E Y RA + E + KN+ +E DKN LY+KN++D +D
Sbjct: 281 KKFDDKEWYV--CRAQKKSEREMELKEKFEKNI-----KEAADKNQGTNLYLKNLDDSID 333
Query: 172 EIE-LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ E LK+ F+ G I+S K+MR G+SKG GFV F + ++A+RA+ +NG + KPLY
Sbjct: 334 DDEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLY 393
Query: 231 VAIAQTKRERTSYLRIMYAKQGPGL----ASTNFPVHP 264
VA+AQ K ER + L+ +++ P + + P++P
Sbjct: 394 VALAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYP 431
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ + +L +FS+ G + S +V + + S GY +V +S+ A A+E L
Sbjct: 42 YVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEMLN 101
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + RI S D + + N+++KN++ +D L
Sbjct: 102 FTPINGKPI--------RIMYSNR----------DPSSRKSGAANIFIKNLDKSIDNKAL 143
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K +YV
Sbjct: 144 YDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFV 203
Query: 236 TKRER 240
K+ER
Sbjct: 204 RKQER 208
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 16/95 (16%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINT 218
+LYV +++ V + +L FSQ G + SV++ R N +S G+ +V FS+P +A RA+
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEM 99
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
LN + KP +RIMY+ + P
Sbjct: 100 LNFTPINGKP---------------IRIMYSNRDP 119
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 131/246 (53%), Gaps = 25/246 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L +F K+G I S KV+ +DG S+G+GFV + ++A A +L
Sbjct: 186 YVKNFGEDFSDEMLRDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLELNG 245
Query: 117 AT-VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
VEG LY GR Q+ A + + +E + NLYVKN++D +D+
Sbjct: 246 KELVEGKPLYV-----GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 300
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F+ G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 301 ERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 359
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
+AQ K +R ++L Y ++ +AS Q+ Q++Q PG G +P +
Sbjct: 360 LAQRKEDRKAHLTSQYMQR---MASMRM-------QQMGQIFQ-PGSAGGYFVP----TI 404
Query: 293 PPSPLF 298
PP+ F
Sbjct: 405 PPAQRF 410
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV ++G SKGYGFV + T+E+A +IEK
Sbjct: 93 FIKNLDKAIDNKAMYDTFSAFGNILSCKVAQDENGASKGYGFVHFETEEAANKSIEK--- 149
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L + GR + K + ++ E+ L N+YVKN +D + L
Sbjct: 150 --VNGMLLNGKKVYVGRF--------IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 199
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIA 234
+ F + G I+S K+M G S+GFGFV F +PD A RA LNG L KPLYV A
Sbjct: 200 RDMFEKYGRITSHKVMYKEDGSSRGFGFVAFEDPDAAERACLELNGKELVEGKPLYVGRA 259
Query: 235 QTKRERTSYLR 245
Q K ER L+
Sbjct: 260 QKKAERQKELK 270
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 5 YVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDTMN 64
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ +D +
Sbjct: 65 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKAIDNKAM 106
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV F + AN++I +NG+L + K +YV
Sbjct: 107 YDTFSAFGNILSCKVAQDENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFI 166
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 167 PRKEREKEL 175
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L D+TE +L + FS G + S+++ R T R +
Sbjct: 3 SLYVGDLHSDITEAMLFEK------------------FSPAGPVLSIRVCRDMITRRSL- 43
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V F P +A RA++T+N + +P +RIM++++ P L
Sbjct: 44 -GYAYVNFQQPSDAERALDTMNFDMIKGRP---------------IRIMWSQRDPSL 84
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 113/194 (58%), Gaps = 2/194 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA + L ++F+ FG I S+ V+ DGKSK +GFV + + A NA+E L
Sbjct: 207 YVKNLAEATTDEDLRKVFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLNG 266
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E Y RA + E + + + + E+ NLY+KNI+D +D+ +L+
Sbjct: 267 KLINEKEWYVG--RAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNIDDSIDDEKLR 324
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F+ G ++S K+M++ +G S G GFV FS P+EA +A+N +NG + KPLYVA+AQ
Sbjct: 325 ELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQR 384
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ +A+
Sbjct: 385 KEERRARLQAQFAQ 398
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 107/197 (54%), Gaps = 21/197 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH FS FG I S +VV+ G SKGYGFVQ+ +ESA AIEK+
Sbjct: 117 FIKNLEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNG 176
Query: 117 ATVEGMEL-YAPSLRAGR--IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++ AP +R + S +FNN+YVKNL + T+E
Sbjct: 177 MLINDRQVSVAPFIRKQERDMASSKNFNNVYVKNLAEATTDE------------------ 218
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G ISS +MR G SK FGFV F N D+A A+ LNG L ++K YV
Sbjct: 219 DLRKVFAGFGPISSAVVMRDADGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGR 278
Query: 234 AQTKRERTSYLRIMYAK 250
AQ K ER + L+ + +
Sbjct: 279 AQKKSEREAELKAKFEQ 295
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 50 ATPTFIP--FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQES 106
++P P + +L + +L+++F++ G + S +V KS GY +V Y T +
Sbjct: 20 SSPYVAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQD 79
Query: 107 ALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A+E L V+G + S R I++S + N+++KN
Sbjct: 80 ASQALELLNFTLVKGKPIRIMYSHRDPSIRKSGA-------------------ANIFIKN 120
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
+ +D L FS G I S +++ + G SKG+GFV F + A AI +NG+L +
Sbjct: 121 LEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLIN 180
Query: 226 QKPLYVAIAQTKRER 240
+ + VA K+ER
Sbjct: 181 DRQVSVAPFIRKQER 195
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E EL + F+Q G + S+++ R T + + G+ +V + +A++A+
Sbjct: 27 SLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSL--GYAYVNYGTHQDASQAL 84
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
LN L KP +RIMY+ + P +
Sbjct: 85 ELLNFTLVKGKP---------------IRIMYSHRDPSI 108
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 134 bits (336), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 10/199 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + +F ++G +QSS + G++ G+GFV + T E A A++ L+
Sbjct: 226 YVKNIDPEVTDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALHE 285
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G +LY R Q+ A ++ D +E ++K NLY+KN+ DDVD+
Sbjct: 286 SDFHGRKLYV-----ARAQKKAE-REAELRKQYDQARQERMNKYQGVNLYIKNLEDDVDD 339
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L+ F G I+S ++MR RG SKGFGFVC+S PDEA +A+ +N + KPLYV+
Sbjct: 340 EKLRAEFEPFGTITSCRVMRDERGKSKGFGFVCYSAPDEATKAVAEMNNKMIGSKPLYVS 399
Query: 233 IAQTKRERTSYLRIMYAKQ 251
+AQ K R L A++
Sbjct: 400 LAQRKEIRRQQLESQIAQR 418
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 103/198 (52%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG++ S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 133 FIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKSVNG 192
Query: 117 ATVEGMELY-APSL----RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y P + R +I E A F NLYVKN I+ +V
Sbjct: 193 MLLNDKKVYVGPHISRKERQSKIDEMRAHFTNLYVKN------------------IDPEV 234
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ E + F Q G + S + R ++G + GFGFV F +EA +A++ L+ FH + LY
Sbjct: 235 TDEEFENLFKQYGQVQSSLLKRDDQGRNLGFGFVNFETHEEAQKAVDALHESDFHGRKLY 294
Query: 231 VAIAQTKRERTSYLRIMY 248
VA AQ K ER + LR Y
Sbjct: 295 VARAQKKAEREAELRKQY 312
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 23/212 (10%)
Query: 41 ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYG 97
AS H A + + L T+ L +IF+ G + S + V +D +S GY
Sbjct: 29 ASAPTHGANTATSASLYVGELDPTVTESMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYA 86
Query: 98 FVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
+V Y A+E+L ++++ R RI S D +
Sbjct: 87 YVNYLNAADGERALEQLNYSSIKN--------RPCRIMWSQR----------DPALRKTG 128
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
N+++KN+++ +D L F+ G + S K+ G SKG+GFV + + A AI
Sbjct: 129 QGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIK 188
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
++NG+L + K +YV +++ER S + M A
Sbjct: 189 SVNGMLLNDKKVYVGPHISRKERQSKIDEMRA 220
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 120/207 (57%), Gaps = 3/207 (1%)
Query: 50 ATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESAL 108
+P F V NL+ T + L IF K+G I S+ V+ G SK +GFV + + +SA
Sbjct: 187 GSPKFTNVYVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAA 246
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
A+E L AT +++ +A R E + + + E+ NLY+KN++D
Sbjct: 247 AAVEHLNGATFNDDKVWYVG-KAQRKSEREAELRAKFEQERKNKFEKFKGTNLYLKNLDD 305
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
V++ +LK+ FS+ G I+S K+M +G+SKG GFV F P+EA RA+N +NG + +KP
Sbjct: 306 SVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKP 365
Query: 229 LYVAIAQTKRERTSYLRIMYAK-QGPG 254
LYVA+AQ K ER + L+ +A+ + PG
Sbjct: 366 LYVAVAQRKEERKARLQAQFAQIRSPG 392
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 102/200 (51%), Gaps = 23/200 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L F+ FG + S K+ + +G+SKGYGFVQ+ +E+A NAI++L
Sbjct: 104 FIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNG 163
Query: 117 ATVEGMELYAPSL----RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y R S F N+YVKNL + T++
Sbjct: 164 MLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDD----------------- 206
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH-QKPLYV 231
+LK F + G I+S +MR G+SK FGFV F + D A A+ LNG F+ K YV
Sbjct: 207 -DLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYV 265
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
AQ K ER + LR + ++
Sbjct: 266 GKAQRKSEREAELRAKFEQE 285
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 31/191 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L + I +L+ +F + + S +V Q + S GY +V +++ + A NA+E L
Sbjct: 16 YVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLN 75
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ G + PS+R + F N+++KNLD +
Sbjct: 76 FTPLNGKPIRIMFSHRDPSIR------KSGFANVFIKNLDPSI----------------- 112
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
D L F+ G + S KI N G SKG+GFV F + A AI LNG+L + K +
Sbjct: 113 -DNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQV 171
Query: 230 YVAIAQTKRER 240
YV + +ER
Sbjct: 172 YVGLFVRHQER 182
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 16/102 (15%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
+LYV +++ + E +L F Q + S+++ R R S G+ +V F++P +A A+
Sbjct: 14 SLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEH 73
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
LN + KP +RIM++ + P + + F
Sbjct: 74 LNFTPLNGKP---------------IRIMFSHRDPSIRKSGF 100
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/267 (33%), Positives = 131/267 (49%), Gaps = 44/267 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + + +L F +FG I S+ V+ DGKSK +GFV + + A A+E L
Sbjct: 213 FVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNG 272
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ + N + + + +E DK NLYVKN++D + +
Sbjct: 273 KNFDDKEWYV-----GKAQKKSERENELKQRFEQSM-KEAADKYQGANLYVKNLDDSIGD 326
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS G I+S K+MR G+S+G GFV FS P+EA+RA+ +NG + KPLYV
Sbjct: 327 EKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVT 386
Query: 233 IAQTKRERTSYLRI-------------------MYAKQGPGLASTNF---------PVHP 264
+AQ K +R + L+ MY GPG+ F P P
Sbjct: 387 LAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQLFYSQGPPAIIPSQP 446
Query: 265 TL-YQRALQVYQAPGFRHGGM-IPNGF 289
YQ+ L PG R G +PN F
Sbjct: 447 GFGYQQQLM----PGMRPGAAPVPNFF 469
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 102/193 (52%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV G+SKGYGFVQ+ +ESA AIEKL
Sbjct: 122 FIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNG 181
Query: 117 ATVEGMELY-APSLRAGRIQ---ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR + + A FNN++VKNL + T++
Sbjct: 182 MLLNDKQVYVGPFLRKQERESAADKAKFNNVFVKNLSESTTDD----------------- 224
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
ELK F + G I+S +MR G SK FGFV F N D+A RA+ LNG F K YV
Sbjct: 225 -ELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVG 283
Query: 233 IAQTKRERTSYLR 245
AQ K ER + L+
Sbjct: 284 KAQKKSERENELK 296
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L+ +F++ G + S +V +S GYG+V +S + A A++ L
Sbjct: 34 YVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARALDVLN 93
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ R RI S D + N+++KN++ +D L
Sbjct: 94 FTPLNN--------RPIRIMYSHR----------DPSIRKSGQGNIFIKNLDRAIDHKAL 135
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV F N + A +AI LNG+L + K +YV
Sbjct: 136 HDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFL 195
Query: 236 TKRERTS 242
K+ER S
Sbjct: 196 RKQERES 202
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 18/103 (17%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--TNRGISKGFGFVCFSNPDEA 212
+ + +LYV +++ +V + +L F+Q G + SV++ R T+R S G+G+V FSNP +A
Sbjct: 27 QFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSR-RSLGYGYVNFSNPQDA 85
Query: 213 NRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
RA++ LN + +P +RIMY+ + P +
Sbjct: 86 ARALDVLNFTPLNNRP---------------IRIMYSHRDPSI 113
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 119/214 (55%), Gaps = 16/214 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D +L +FS+FG + S KV+ G S+G+GFV + E A A+ +
Sbjct: 194 YVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G LY GR Q+ N +K + + ++ L + NLYVKN++D +D+
Sbjct: 254 REVSGRLLYV-----GRAQKRVERQN-ELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 366
Query: 233 IAQTKR-----ERTSYLRIMYAKQGPGLASTNFP 261
+A+ ++ + L M A GP L S P
Sbjct: 367 LAEGRKAILTNQYMQRLSTMRALGGPILGSFQQP 400
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T E+A NAI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E L + ++ N+YVKN++ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREV----ELGARAMEF--------TNIYVKNLHVDVDEQRLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR G S+GFGFV F +EA +A+ +NG + LYV AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDVSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEVIKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G S+GFGFV F + A AI+T+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER L
Sbjct: 175 SRREREVEL 183
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE + LY K FS G I S+++ R T R S
Sbjct: 12 SLYVGDLHPDVTEAM----LYEK--------------FSPAGPILSIRVCRDVATRR--S 51
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ ++ F P +A RA++T+N + +P +RIM++++ PGL
Sbjct: 52 LGYAYINFQQPADAERALDTMNFEVIKGQP---------------IRIMWSQRDPGL 93
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 124/236 (52%), Gaps = 46/236 (19%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T+E+A AI +
Sbjct: 102 FIKNLDDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETREAASQAISTMNG 160
Query: 117 ATVEGMELYA-PSLRAGRI-------------------QESASFNN-------LYV---- 145
+ ++ A P AGR+ Q S N LYV
Sbjct: 161 MLLNDRKVGAQPCCPAGRVGSGKRPPSGRSRPAGPVPAQAVTSMNGKELNGRVLYVGRAQ 220
Query: 146 ---------KNLDDDVTEEILDK----NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR 192
K + + +E +++ NLYVKN++D +D+ +L++ FS G I+S K+M
Sbjct: 221 KRTERQSELKRKFEQIKQERVNRYQGVNLYVKNLDDCIDDEKLRKEFSPYGTITSAKVM- 279
Query: 193 TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K ER + L Y
Sbjct: 280 TESGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 335
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 58/210 (27%)
Query: 21 SLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDI 80
SLYVGDL +DV AM L++ FS G I
Sbjct: 12 SLYVGDLH--------------VDVTEAM--------------------LYEKFSPAGSI 37
Query: 81 QSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQES 137
S +V V S+ +S GY ++ + A A++ + ++G R RI S
Sbjct: 38 ISIRVCRDVASR--RSLGYAYINFQQPADAERALDTMNFEVIKG--------RPIRIMWS 87
Query: 138 ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI 197
L + N+++KN++D +D L FS G I S K++ G
Sbjct: 88 QRDPGLRKSGVG----------NIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDEHG- 136
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQK 227
S+GFGFV F + A++AI+T+NG+L + +
Sbjct: 137 SRGFGFVHFETREAASQAISTMNGMLLNDR 166
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ KL + FS +G I S+KV+ ++ G SKG+GFV +S+ E A A+ ++
Sbjct: 250 YVKNLDDCIDDEKLRKEFSPYGTITSAKVM-TESGHSKGFGFVCFSSPEEATKAVTEMNG 308
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y+ L
Sbjct: 309 RIVSTKPLYV-ALAQRKEERKAILTNQYMHRL 339
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R + R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHVDVTEAMLYEKFSPAGSIISIRVCRDVASRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 114/201 (56%), Gaps = 10/201 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ T L++ F +FG I S V+ DGKSK +GFV + E A A+E L
Sbjct: 207 FVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALNG 266
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++ E + G+ Q+ + +K + +E DK NLY+KN++D + +
Sbjct: 267 KKIDDKEWFV-----GKAQKKYE-REVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGD 320
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS G I+S K+MR GIS+G GFV FS P+EA+RA+ +NG + KPLYVA
Sbjct: 321 EKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKIVVSKPLYVA 380
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K +R + L+ +++ P
Sbjct: 381 LAQRKEDRRARLQAQFSQMRP 401
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV G+SKGYGFVQ+ ++E+A AIEKL
Sbjct: 116 FIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNG 175
Query: 117 ATVEGMELY-APSLRAGR---IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR + FNN++VKNL + TEE L+K
Sbjct: 176 MLLNDKQVYVGPFLRKQERDTATDKMRFNNVFVKNLSETTTEEDLNKT------------ 223
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
F + G I+S+ +MR G SK FGFV F N ++A +A+ LNG K +V
Sbjct: 224 ------FGEFGTITSIVVMRDGDGKSKCFGFVNFENAEDAAKAVEALNGKKIDDKEWFVG 277
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 278 KAQKKYEREVELK 290
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 24/203 (11%)
Query: 45 VHSAMATPTFIP---FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQ 100
V++ P F+ + +L +++ + +L+ +F++ G + S +V +S GYG+V
Sbjct: 13 VNAGANNPNFVTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVN 72
Query: 101 YSTQESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDK 159
YS + A A+E L + G + S R I++S +
Sbjct: 73 YSNPQDAARALEMLNFTPLNGSPIRVMYSHRDPTIRKSGA-------------------G 113
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K+ G SKG+GFV F + + A +AI L
Sbjct: 114 NIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKL 173
Query: 220 NGILFHQKPLYVAIAQTKRERTS 242
NG+L + K +YV K+ER +
Sbjct: 174 NGMLLNDKQVYVGPFLRKQERDT 196
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ +++ +L ++F K+G I S KV+ DG S+G+GFV + + A A+ +L+
Sbjct: 186 YIKNIDENVNDKELFEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELHG 245
Query: 117 A-TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
+ EG Y GR Q+ A N + + E + NLYVKN++D +D+
Sbjct: 246 KESPEGKTYYV-----GRAQKKAERQNELKRKFEQYKIERMNRYQGINLYVKNLDDTIDD 300
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +N + KPLYVA
Sbjct: 301 EHLRREFSVFGTITSAKVM-MDDGRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVA 359
Query: 233 IAQTKRERTSYLRIMY 248
+AQ K ER ++L Y
Sbjct: 360 LAQRKEERKAHLNAQY 375
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 110/191 (57%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G+SKGYGFV + ++SA +IEK
Sbjct: 93 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFDMEQSATQSIEK--- 149
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L + GR + K+ + ++ ++ L N+Y+KNI+++V++ EL
Sbjct: 150 --VNGMLLNGKKVFVGRF--------VGRKDREKELGQKAKLFTNVYIKNIDENVNDKEL 199
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYVAIA 234
+ F + G I+S K+M + G S+GFGFV F +P EA +A++ L+G + K YV A
Sbjct: 200 FEMFEKYGSITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVSELHGKESPEGKTYYVGRA 259
Query: 235 QTKRERTSYLR 245
Q K ER + L+
Sbjct: 260 QKKAERQNELK 270
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ ++D + FS G I S K+ + G SKG+GFV F A ++I +
Sbjct: 91 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFDMEQSATQSIEKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K ++V +++R L
Sbjct: 151 NGMLLNGKKVFVGRFVGRKDREKEL 175
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL TID+ L + FS FG I S+KV++ DG+SKG+GFV +S+ E A A+ ++
Sbjct: 290 YVKNLDDTIDDEHLRREFSVFGTITSAKVMMD-DGRSKGFGFVCFSSPEEATKAVTEMNN 348
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKN 147
V LY +L + + A N Y+++
Sbjct: 349 RIVGTKPLYV-ALAQRKEERKAHLNAQYLQS 378
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 108/208 (51%), Gaps = 23/208 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++DN LH+ FS G I S KV G+S+GYGFVQ+ T++SA NAIEKL
Sbjct: 132 FVKNLDKSVDNKTLHETFSGCGTIVSCKVAADHMGQSRGYGFVQFDTEDSAKNAIEKLNG 191
Query: 117 ATVEGMELY-APSLRAGRIQESA---SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ P LR + +A F N+YVKNL + T++
Sbjct: 192 KVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEVTTDD----------------- 234
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
ELK F Q G ISS +MR G S+ FGFV F NP++A RA+ LNG F K YV
Sbjct: 235 -ELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVG 293
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNF 260
AQ K ER L Y +QG A F
Sbjct: 294 KAQKKSERELELSRRY-EQGSSDAGNKF 320
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 119/240 (49%), Gaps = 10/240 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + +L F ++G I S+ V+ DGKS+ +GFV + E A A+E L
Sbjct: 223 YVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 282
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E Y + + + + Y + D + NLYVKN++D V + +L+
Sbjct: 283 KKFDDKEWYVGKAQK-KSERELELSRRYEQG-SSDAGNKFDGLNLYVKNLDDTVTDEKLR 340
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G I+S K+MR G SKG GFV FS EA+R +N +NG + KPLYVA+AQ
Sbjct: 341 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 400
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSP 296
K ER + L+ +++ P P P APG G I G SPP P
Sbjct: 401 KEERRAKLQAQFSQMRPAFIPGVGPRMPIF------PGGAPGL--GQQIFYGQGSPPIIP 452
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 99/233 (42%), Gaps = 38/233 (16%)
Query: 11 NDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKL 70
ND ++ + +L +G D + LCS + +D + + + +L
Sbjct: 17 NDGSVTASA-TLGIGGGDGVNHGALCSLYVGDLDFN------------------VTDSQL 57
Query: 71 HQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129
+ F++ + S +V + S GYG+V YS E A A++KL +T+ G +
Sbjct: 58 YDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKLNYSTLNGKMIRITYS 117
Query: 130 RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVK 189
+ NL+VKNLD V D L + FS CG I S K
Sbjct: 118 SRDSSARRSGVGNLFVKNLDKSV------------------DNKTLHETFSGCGTIVSCK 159
Query: 190 IMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
+ + G S+G+GFV F D A AI LNG + + K ++V K ER S
Sbjct: 160 VAADHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES 212
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 118/200 (59%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL ++F K+G I S KV++ DGKS+G+GFV + ++A A+ +L
Sbjct: 195 YVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNG 254
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
V EG +Y GR Q+ A +K + + E L + NLYVKN++D ++
Sbjct: 255 KEVAEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSIN 308
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M + G SKGFGFVCFS P+EA +A+ +NG + KPLYV
Sbjct: 309 DERLRREFAPFGTITSAKVMMED-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYV 367
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 368 ALAQRKEDRKAHLASQYMQR 387
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ + +
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFGEDMTDDK 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYVAI 233
LK+ F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGR 267
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 268 AQKKAERQQELK 279
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 117/215 (54%), Gaps = 9/215 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + KL ++FS FG S +V+ + G+S+G+GFV Y+ E A A+ ++
Sbjct: 194 YIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
+ G LY GR Q+ + D D + NLYVKN++D +D+
Sbjct: 254 KEINGKILYV-----GRAQKRLERQGELKRKFDQIKQDRIQRYQGVNLYVKNLDDSIDDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ F+ G I+S K+M T+ SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 RLRKEFAPYGTITSAKVM-TDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQ 268
AQ + ER + L Y ++ L + P+ + +Q
Sbjct: 368 AQRREERKAILTNKYMQRLATLRTMASPLIDSYHQ 402
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 25/195 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ +IDN L+ FS FG+I S KVV + G SKGYGFV + TQE+A AIE +
Sbjct: 102 FIKNMDESIDNKALYDTFSAFGNILSCKVVCDEKG-SKGYGFVHFETQEAANRAIETMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQE------SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ ++ + +E + F N+Y+KN +D T+E
Sbjct: 161 MLLNDRKVFVGHFKSRKEREVEFGSKAMKFTNVYIKNFGEDFTDE--------------- 205
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+LK+ FS G SV++M+ +G S+GFGFV +++ ++A +A+N +NG + K LY
Sbjct: 206 ---KLKEVFSAFGRTLSVRVMKDEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILY 262
Query: 231 VAIAQTKRERTSYLR 245
V AQ + ER L+
Sbjct: 263 VGRAQKRLERQGELK 277
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 24/197 (12%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYST 103
S A P + +L + L+Q FS G I S +V ++++ +S GY +V +
Sbjct: 4 SGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITR--RSLGYAYVNFQQ 61
Query: 104 QESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYV 163
A A++ + ++G R RI S L + N+++
Sbjct: 62 PADAECALDTMNYDVIKG--------RPIRIMWSQRDPGLRKSGVG----------NIFI 103
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN+++ +D L FS G I S K++ +G SKG+GFV F + ANRAI T+NG+L
Sbjct: 104 KNMDESIDNKALYDTFSAFGNILSCKVVCDEKG-SKGYGFVHFETQEAANRAIETMNGML 162
Query: 224 FHQKPLYVAIAQTKRER 240
+ + ++V ++++ER
Sbjct: 163 LNDRKVFVGHFKSRKER 179
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 105/198 (53%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV G+SKGYGFVQ+ +E+A NAI KL
Sbjct: 130 FIKNLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNG 189
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y + +E+ S FNN+YVKNL + TE+
Sbjct: 190 MLLNDKKVYVGPFVRKQERENVSGNPKFNNVYVKNLSESTTED----------------- 232
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F + G I+SV +MR G S+ FGFV F NPD+A RA+ LNG F K YV
Sbjct: 233 -NLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVC 291
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER L+ + K
Sbjct: 292 RAQKKSEREMELKEKFEK 309
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 119/218 (54%), Gaps = 17/218 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + L +IF KFG I S V+ DGKS+ +GFV + + A A+E L
Sbjct: 221 YVKNLSESTTEDNLKEIFGKFGPITSVVVMREGDGKSRCFGFVNFENPDDAARAVEDLNG 280
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKN----LYVKNINDDVD 171
+ E Y RA + E + KN+ +E DKN LY+KN++D +D
Sbjct: 281 KKFDDKEWYV--CRAQKKSEREMELKEKFEKNI-----KEAADKNQGTNLYLKNLDDSID 333
Query: 172 EIE-LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ E LK+ F+ G I+S K+MR G+SKG GFV F + ++A+RA+ +NG + KPLY
Sbjct: 334 DDEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLY 393
Query: 231 VAIAQTKRERTSYLRIMYAKQGPGL----ASTNFPVHP 264
VA+AQ K ER + L+ +++ P + + P++P
Sbjct: 394 VALAQRKEERRARLQAQFSQMRPMVMPPSVAPRMPMYP 431
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ + +L +FS+ G + S +V + + S GY +V +S+ A A+E L
Sbjct: 42 YVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEMLN 101
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + RI S D + + N+++KN++ +D L
Sbjct: 102 FTPINGKPI--------RIMYSNR----------DPSSRKSGAANIFIKNLDKSIDNKAL 143
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K +YV
Sbjct: 144 YDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFV 203
Query: 236 TKRER 240
K+ER
Sbjct: 204 RKQER 208
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 16/95 (16%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINT 218
+LYV +++ V + +L FSQ G + SV++ R N +S G+ +V FS+P +A RA+
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEM 99
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
LN + KP +RIMY+ + P
Sbjct: 100 LNFTPINGKP---------------IRIMYSNRDP 119
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 115/199 (57%), Gaps = 10/199 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL ++F K+G I S KV++ DGKS+G+GFV + ++A A+ +L
Sbjct: 195 YVKNFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNG 254
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
V EG +Y GR Q+ A + + E + NLYVKN++D +++
Sbjct: 255 KEVAEGKCMYV-----GRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSIND 309
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F+ G I+S K+M + G SKGFGFVCFS P+EA +A+ +NG + KPLYVA
Sbjct: 310 ERLRREFAPFGTITSAKVMMED-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVA 368
Query: 233 IAQTKRERTSYLRIMYAKQ 251
+AQ K +R ++L Y ++
Sbjct: 369 LAQRKEDRKAHLASQYMQR 387
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 103/192 (53%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ + +
Sbjct: 162 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFGEDMTDDK 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK+ F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV
Sbjct: 208 LKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGR 267
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 268 AQKKAERQQELK 279
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K +YV
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 114/196 (58%), Gaps = 10/196 (5%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N + + KL ++F K+G I S KV++ DGKS+G+GFV + ++A A+ +L V
Sbjct: 169 NFGEDMTDDKLKEMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEV 228
Query: 120 -EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEIEL 175
EG +Y GR Q+ A + + E + NLYVKN++D +++ L
Sbjct: 229 AEGKCMYV-----GRAQKKAERQQELKRKFEQLKLERLSRYQGVNLYVKNLDDSINDERL 283
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F+ G I+S K+M + G SKGFGFVCFS P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 284 RREFAPFGTITSAKVMMED-GRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQ 342
Query: 236 TKRERTSYLRIMYAKQ 251
K +R ++L Y ++
Sbjct: 343 RKEDRKAHLASQYMQR 358
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 91/190 (47%), Gaps = 42/190 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDK--- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L KN +D+ + +LK
Sbjct: 159 --VNGMLLNGK------------------------------------KNFGEDMTDDKLK 180
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIAQ 235
+ F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV AQ
Sbjct: 181 EMFEKYGTITSHKVMIKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 240
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 241 KKAERQQELK 250
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 19/172 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ ++D +
Sbjct: 74 FDMIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
FS G I S K+ + G+SKG+GFV F + AN++I+ +NG+L + K
Sbjct: 116 YDTFSAFGNILSCKVAQDESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGK 167
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ P L
Sbjct: 70 DTMNFDMIKGRP---------------IRIMWSQRDPSL 93
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 111/192 (57%), Gaps = 10/192 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L +FSKFG IQS VV+ +D KSKG+GFV + E A A++++
Sbjct: 169 YVKNFDENFTDQCLVDLFSKFGKIQSC-VVMKEDDKSKGFGFVSFENPEDAEAAVKEMNE 227
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
+ G +LY GR Q+ A + + E I NLY+KN++D VD+
Sbjct: 228 YQLPSGKKLYV-----GRAQKKAERQAELKRRYEMLKLERIQQYEGVNLYLKNLDDSVDD 282
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F + G+I+S K+M +G SKGFGFVCFS+PDEA RA++ +N KPLYVA
Sbjct: 283 AQLRKAFEKFGVITSAKVMTDEKGQSKGFGFVCFSSPDEATRAVSEMNNQKLGNKPLYVA 342
Query: 233 IAQTKRERTSYL 244
+AQ K +R + L
Sbjct: 343 LAQRKEDRKAQL 354
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 93/197 (47%), Gaps = 49/197 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ ++ FS FG+I S KV ++G SKGYG+V
Sbjct: 103 FIKNLDKDIDHKAIYDTFSNFGNILSCKVATDENGVSKGYGYVGK--------------- 147
Query: 117 ATVEGMELYAPSLRAGRIQE----SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ P RA R++E + F N+YVKN D++ T++ L VD
Sbjct: 148 --------FIP--RAQRMREIGETTRKFTNVYVKNFDENFTDQCL------------VD- 184
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYV 231
FS+ G I S +M+ + SKGFGFV F NP++A A+ +N L K LYV
Sbjct: 185 -----LFSKFGKIQSCVVMKED-DKSKGFGFVSFENPEDAEAAVKEMNEYQLPSGKKLYV 238
Query: 232 AIAQTKRERTSYLRIMY 248
AQ K ER + L+ Y
Sbjct: 239 GRAQKKAERQAELKRRY 255
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 23/151 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ +L + L + FS G + S + V +D +S GY +V Y A A++
Sbjct: 15 YVGDLHPDVTEAMLFEKFSHAGPVLS--IRVCRDAVTRRSLGYAYVNYQQTPDAERALDT 72
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ V G R RI S +L + N+++KN++ D+D
Sbjct: 73 MNFDPVFG--------RPIRIMWSQRDPSLRRSGVG----------NVFIKNLDKDIDHK 114
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFV 204
+ FS G I S K+ G+SKG+G+V
Sbjct: 115 AIYDTFSNFGNILSCKVATDENGVSKGYGYV 145
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V + +A RA+
Sbjct: 13 SLYVGDLHPDVTEAMLFEKFSHAGPVLSIRVCRDAVTRRSL--GYAYVNYQQTPDAERAL 70
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N +P +RIM++++ P L
Sbjct: 71 DTMNFDPVFGRP---------------IRIMWSQRDPSL 94
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 111/198 (56%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + Q+F +FG++ S+ + ++G SKG+GFV + E A NA++ L+
Sbjct: 233 YVKNLDPEVSLEEFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLHD 292
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
G +L+ R Q+ A K+ + E++ NLY+KN++D++D+
Sbjct: 293 TEYNGRKLFV-----SRAQKKAEREEELRKSYEHAKMEKMSKYQGVNLYIKNLDDEIDDE 347
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ F G I+S K+MR +G SKGFGFVCFS+PDEA +A+ +N + KPLYV++
Sbjct: 348 RLRAEFEPFGTITSAKVMRDEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSL 407
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 408 AQRREVRRQQLESQIAQR 425
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG++ S KV + G+SKGYGFV Y T E+A AI+ +
Sbjct: 140 FIKNLDEAIDNKALHDTFAAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNG 199
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y + R ++ E A F N+YVKNLD +V+ E
Sbjct: 200 MLLNDKKVYVGHHISKKERQSKLDEIRAQFTNIYVKNLDPEVSLE--------------- 244
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E Q F Q G ++S I G SKGFGFV F +EA A++ L+ ++ + L+
Sbjct: 245 ---EFTQLFEQFGNVTSAVIQTDEEGNSKGFGFVNFEFHEEAQNAVDGLHDTEYNGRKLF 301
Query: 231 VAIAQTKRERTSYLRIMY 248
V+ AQ K ER LR Y
Sbjct: 302 VSRAQKKAEREEELRKSY 319
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 23/205 (11%)
Query: 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQE 105
+ +P+ + L T+ L +IF+ G + S + V +D +S GY +V Y
Sbjct: 44 LPSPSASLYVGELDPTVSEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAA 101
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A+E+L + ++G RA RI S D + N+++KN
Sbjct: 102 DGERALEQLNYSLIKG--------RACRIMWSQR----------DPALRKTGQGNIFIKN 143
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
+++ +D L F+ G + S K+ +G SKG+GFV + + A AI +NG+L +
Sbjct: 144 LDEAIDNKALHDTFAAFGNVLSCKVATDEQGRSKGYGFVHYETAEAAETAIKAVNGMLLN 203
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAK 250
K +YV +K+ER S L + A+
Sbjct: 204 DKKVYVGHHISKKERQSKLDEIRAQ 228
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 116/199 (58%), Gaps = 2/199 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ T + L IF K+G I S+ V+ G SK +GFV + + +SA A+E L
Sbjct: 655 YVKNLSETTTDDDLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNG 714
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
AT +++ + + A + + + E+ NLY+KN++D V++ +LK
Sbjct: 715 ATFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKF-EKFKGTNLYLKNLDDSVNDEKLK 773
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G I+S K+M +G+SKG GFV F P+EA RA+N +NG + +KPLYVA+AQ
Sbjct: 774 ELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQR 833
Query: 237 KRERTSYLRIMYAK-QGPG 254
K ER + L+ +A+ + PG
Sbjct: 834 KEERKARLQAQFAQIRSPG 852
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 102/200 (51%), Gaps = 23/200 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L F+ FG + S K+ + +G+SKGYGFVQ+ +E+A NAI++L
Sbjct: 564 FIKNLDPSIDNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNG 623
Query: 117 ATVEGMELYAPSL----RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y R S F N+YVKNL + T++
Sbjct: 624 MLINDKQVYVGLFVRHQERNRGNGSPKFTNVYVKNLSETTTDD----------------- 666
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH-QKPLYV 231
+LK F + G I+S +MR G+SK FGFV F + D A A+ LNG F+ K YV
Sbjct: 667 -DLKNIFGKYGSITSAVVMRDASGMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYV 725
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
AQ K ER + LR + ++
Sbjct: 726 GKAQRKSEREAELRAKFEQE 745
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 31/191 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L + I +L+ +F + + S +V Q + S GY +V +++ + A NA+E L
Sbjct: 476 YVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLN 535
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ G + PS+R + F N+++KNLD +
Sbjct: 536 FTPLNGKPIRIMFSHRDPSIR------KSGFANVFIKNLDPSI----------------- 572
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
D L F+ G + S KI N G SKG+GFV F + A AI LNG+L + K +
Sbjct: 573 -DNKALLDTFAAFGTVLSCKIALDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQV 631
Query: 230 YVAIAQTKRER 240
YV + +ER
Sbjct: 632 YVGLFVRHQER 642
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 30/207 (14%)
Query: 58 TVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA 117
T+ + + +W+LHQ+ ++ S+ Q+G Q Q + ++ + +A
Sbjct: 380 TILVIAISQSWQLHQM----DELNLSRPSTFQNGN-------QLKAQIHPIRSVNRRGSA 428
Query: 118 TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDEIE 174
E G + +F+ DD T + +LYV +++ + E +
Sbjct: 429 PARKSEKRITDSVTGGSDTAVAFSGGGAAVHGDDGTYCGGRFANASLYVGDLDTAIGEGQ 488
Query: 175 LKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F Q + S+++ R R S G+ +V F++P +A A+ LN + KP
Sbjct: 489 LYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHLNFTPLNGKP----- 543
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNF 260
+RIM++ + P + + F
Sbjct: 544 ----------IRIMFSHRDPSIRKSGF 560
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 112/199 (56%), Gaps = 9/199 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F+KFG+I S +V+ +GKSKG+GFV ++ E A A++ L+
Sbjct: 216 YVKNFGDHYNKETLEKVFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+T+EG +L RA + S + +K + E + K NLYVKN+++ VD+
Sbjct: 275 STIEGTDLKLHVCRA----QKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDD 330
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA
Sbjct: 331 DGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVA 390
Query: 233 IAQTKRERTSYLRIMYAKQ 251
I Q K +R + L Y ++
Sbjct: 391 IGQRKEDRRAQLASQYMQR 409
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 106/191 (55%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + +DG SKGYGFV + T+E+A NAI+K
Sbjct: 123 FIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQK--- 179
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ Q A N + L + + N+YVKN D ++ L+
Sbjct: 180 --VNGMLLAGKKVFVGKFQPRAQRN----RELGETAKQFT---NVYVKNFGDHYNKETLE 230
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK--PLYVAIA 234
+ F++ G I+S ++M T G SKGFGFV F+NP+EA A+ L+ L+V A
Sbjct: 231 KVFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRA 289
Query: 235 QTKRERTSYLR 245
Q K ER + L+
Sbjct: 290 QKKSERHAELK 300
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ G SKG+GFV F + A AI +
Sbjct: 121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKV 180
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
NG+L K ++V Q + +R L AKQ + NF H
Sbjct: 181 NGMLLAGKKVFVGKFQPRAQRNRELGET-AKQFTNVYVKNFGDH 223
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDEANRAINT 218
+LYV +++ DV+E L + FS G + S+++ R N +S G+ +V F P +A RA++T
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 219 LNGILFHQKPLYVAIAQ 235
+N H KP+ + +Q
Sbjct: 93 MNFEALHGKPMRIMWSQ 109
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 115/200 (57%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + KL +F K+G I S KV+ DGKS+G+GFV + ++A A+ +L
Sbjct: 238 YVKNFGEDMTEDKLKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNG 297
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ EG +Y GR Q+ A +K + + E L++ NLYVKN++D +D
Sbjct: 298 KEIAEGKCMYV-----GRAQKKAE-RQQELKRKFEQLKIERLNRYQGVNLYVKNLDDTID 351
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M G SKGFGFVCFS P+EA +A+ +NG + KPLYV
Sbjct: 352 DERLRKEFTPFGTITSAKVM-MEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYV 410
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 411 ALAQRKEDRKAHLASQYMQR 430
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 102/192 (53%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 145 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNG 204
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ E +
Sbjct: 205 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFGEDMTEDK 250
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK F + G I+S K+M + G S+GFGFV F +PD A +A+ LNG + K +YV
Sbjct: 251 LKDMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYVGR 310
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 311 AQKKAERQQELK 322
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ ++D + FS G I S K+ + G SKG+GFV F + AN++I+ +
Sbjct: 143 NVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKV 202
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 203 NGMLLNGKKVYVGKFIPRKEREKEL 227
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 115/200 (57%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F K+G I S KV+ DGKSKG+GFV + E+A A+ L
Sbjct: 195 YVKNFGEDFSDDLLREMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNG 254
Query: 117 AT-VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
VEG L+ GR Q+ A +K + + E L + NLYVKNI+D++D
Sbjct: 255 KEIVEGKPLFV-----GRAQKKAE-RQQELKRKFEQLKMERLSRYQGVNLYVKNIDDNID 308
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+ G I+S K+M + G SKGFGFVCFS+ +EA +A+ +NG + KPLYV
Sbjct: 309 DERLRKEFTPFGTITSAKVMLED-GRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYV 367
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 368 ALAQRKEDRKAHLASQYMQK 387
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 106/196 (54%), Gaps = 25/196 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 102 FIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQE----SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G ++ R R +E + F N+YVKN +D ++++L
Sbjct: 162 MLLNGKRVFVGKFIPRKEREKELGEKAKRFTNVYVKNFGEDFSDDLL------------- 208
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPL 229
++ F + G I+S K+M + G SKGFGFV F +P+ A +A+ +LNG + KPL
Sbjct: 209 -----REMFEKYGRITSHKVMSKDDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPL 263
Query: 230 YVAIAQTKRERTSYLR 245
+V AQ K ER L+
Sbjct: 264 FVGRAQKKAERQQELK 279
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S + L + FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L + N+++KN++ +D +
Sbjct: 74 YDPLKGKPI--------RIMWSQRDPSLRKSGVG----------NVFIKNLDKSIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV F + AN++I+ +NG+L + K ++V
Sbjct: 116 YDTFSTFGNILSCKVAQDESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFI 175
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 176 PRKEREKEL 184
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE +L + FS G + S+++ R T R +
Sbjct: 12 SLYVGDLHSDVTEAMLFEK------------------FSSAGPVLSIRVCRDMITKRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V F P +A RA++T+N KP +RIM++++ P L
Sbjct: 53 -GYAYVNFQQPADAERALDTMNYDPLKGKP---------------IRIMWSQRDPSL 93
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 122/204 (59%), Gaps = 10/204 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL ++F +G I S++V+ Q GKS+G+GFV + ++A A+++L
Sbjct: 195 YVKNFGEELDDGKLKEMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELND 254
Query: 117 ATV-EGMELYAPSLRAGRIQESAS-FNNLYVK--NLDDDVTEEILDKNLYVKNINDDVDE 172
+ G ++Y GR Q+ A ++L K L + NLYVKN++D +D+
Sbjct: 255 KELGNGKKIYV-----GRAQKKAERLSDLKRKFEQLKMERMTRYQGVNLYVKNLDDVIDD 309
Query: 173 IELKQYFSQCGIISSVKIMRTNRGI-SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
L++ F+ G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + QKPLYV
Sbjct: 310 ERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYV 369
Query: 232 AIAQTKRERTSYLRIMYAKQGPGL 255
A+AQ K +R ++L + ++ G+
Sbjct: 370 ALAQRKEDRRAHLSSQFVQRFTGV 393
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 101/190 (53%), Gaps = 13/190 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN + FS FG+I S +V + G S+GYGFV + T+E+A AI K
Sbjct: 102 FIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINK--- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ + + + D L N+YVKN +++D+ +LK
Sbjct: 159 --VNGMLLNEKKVFVGKFVPRSERERM----MGDKAR---LFTNVYVKNFGEELDDGKLK 209
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIAQ 235
+ F G I+S ++M G S+GFGFV F NPD A +A+ LN L + K +YV AQ
Sbjct: 210 EMFEVYGKITSARVMTDQTGKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYVGRAQ 269
Query: 236 TKRERTSYLR 245
K ER S L+
Sbjct: 270 KKAERLSDLK 279
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ D+D + FS G I S ++ +G S+G+GFV F + AN AIN +
Sbjct: 100 NVFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNSRGYGFVHFETEEAANEAINKV 159
Query: 220 NGILFHQKPLYVA--IAQTKRER 240
NG+L ++K ++V + +++RER
Sbjct: 160 NGMLLNEKKVFVGKFVPRSERER 182
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + F Q G + S+++ R + R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSL--GYAYVNFHQPGDAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N +P +RIM++++ P L
Sbjct: 70 DTMNFEPLKNRP---------------MRIMWSQRDPSL 93
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 115/198 (58%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ ++ + ++F+ FG++ S+ + ++G+S+G+GFV + T E A A++ L+
Sbjct: 236 YVKNIDPEANDDEFRELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHD 295
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ +G +L+ R Q+ + ++ + E++ NLY+KN+ DDVD+
Sbjct: 296 SDFKGRKLFV-----SRAQKKSEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDVDDE 350
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G I+S K+MRT G SKGFGFVCFS+PDEA +A+ +N + KPLYV++
Sbjct: 351 KLRDAFEPFGAITSAKVMRTEGGTSKGFGFVCFSSPDEATKAVAEMNNKMMGSKPLYVSL 410
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 411 AQRREVRRQQLESQIAQR 428
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 106/195 (54%), Gaps = 14/195 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG++ S KV + G+SKGYGFV Y T E+A +AI+
Sbjct: 143 FIKNLDDAIDNKALHDTFAAFGNVLSCKVATDEMGRSKGYGFVHYETNEAAESAIK---- 198
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
V GM L + G +++ K+ + E+ N+YVKNI+ + ++ E
Sbjct: 199 -AVNGMLLNDKKVYVG--------HHVSKKDRQAKLDEQKKQFTNVYVKNIDPEANDDEF 249
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F+ G ++S + R G S+GFGFV F +EA +A++TL+ F + L+V+ AQ
Sbjct: 250 RELFTPFGNVTSAVLQRDEEGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLFVSRAQ 309
Query: 236 TKRERTSYLRIMYAK 250
K ER LR Y +
Sbjct: 310 KKSEREEELRRSYEQ 324
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 23/197 (11%)
Query: 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESA 107
P+ + L T+ L +IF+ G + S + V +D +S GY +V Y
Sbjct: 49 APSASLYVGELDPTVSEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYFNAADG 106
Query: 108 LNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
A+E+L + ++G RA RI S D + N+++KN++
Sbjct: 107 ERALEQLNYSLIKG--------RACRIMWSQR----------DPALRKTGQGNIFIKNLD 148
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
D +D L F+ G + S K+ G SKG+GFV + + A AI +NG+L + K
Sbjct: 149 DAIDNKALHDTFAAFGNVLSCKVATDEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDK 208
Query: 228 PLYVAIAQTKRERTSYL 244
+YV +K++R + L
Sbjct: 209 KVYVGHHVSKKDRQAKL 225
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 130/248 (52%), Gaps = 29/248 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L +F K+G I S KV+ DG S+G+GFV + ++A A +L
Sbjct: 186 YVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNG 245
Query: 117 AT-VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
VEG LY GR Q+ A + + +E + NLYVKN++D +D+
Sbjct: 246 KELVEGKPLYV-----GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 300
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F+ G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 301 ERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 359
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
+AQ K +R ++L Y ++ +AS Q+ Q++Q G +GF P
Sbjct: 360 LAQRKEDRKAHLTSQYMQR---MASMRM-------QQMGQIFQPSG-------ASGFFVP 402
Query: 293 --PPSPLF 298
PP+P +
Sbjct: 403 SLPPAPRY 410
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S KV + G SKGYGFV + T+E+A +IEK
Sbjct: 93 FIKNLDKSIDNKALFDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEK--- 149
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L + GR + K + ++ E+ L N+YVKN +D + L
Sbjct: 150 --VNGMLLNGKMVYVGRF--------IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 199
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIA 234
K F + G I+S K+M + G S+GFGFV F +PD A RA LNG L KPLYV A
Sbjct: 200 KDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 259
Query: 235 QTKRERTSYLR 245
Q K ER L+
Sbjct: 260 QKKAERQKELK 270
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S I L + FS G + S +V +S GY +V + A A++ +
Sbjct: 5 YVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTMN 64
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ +D L
Sbjct: 65 FDIIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKSIDNKAL 106
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV F + AN++I +NG+L + K +YV
Sbjct: 107 FDTFSAFGNILSCKVAQDETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFI 166
Query: 236 TKRERTSYL 244
++ER L
Sbjct: 167 PRKEREKEL 175
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L D+TE +L + FS G + S+++ R T R +
Sbjct: 3 SLYVGDLHSDITEAMLFEK------------------FSTAGPVLSIRVCRDMITRRSL- 43
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V F P +A RA++T+N + +P +RIM++++ P L
Sbjct: 44 -GYAYVNFQQPTDAERALDTMNFDIIKGRP---------------IRIMWSQRDPSL 84
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 113/196 (57%), Gaps = 10/196 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ +++ +L ++F K+G I S KV+ DG S+G+GFV + E A A+ +L+
Sbjct: 186 YIKNIDENVNDKELFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTELHG 245
Query: 117 A-TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
+ EG Y GR Q+ A + + E + NLYVKN++D +D+
Sbjct: 246 KESPEGKTYYV-----GRAQKKAERQQELKRKFEQYKIERMNRYQGVNLYVKNLDDTIDD 300
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 301 ERLRKEFSVFGTITSAKVM-MDDGRSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYVA 359
Query: 233 IAQTKRERTSYLRIMY 248
+AQ K +R ++L Y
Sbjct: 360 LAQRKEDRKAHLDSQY 375
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV + G+SKGYGFV + ++SA +IEK+
Sbjct: 93 FIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYGFVHFEMEQSATQSIEKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G +++ R R +E LY N+Y+KNI+++V++ E
Sbjct: 153 MLLNGKKVFVGRFVGRKDREKELGQKAKLYT--------------NVYIKNIDENVNDKE 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYVAI 233
L + F + G I+S K+M + G S+GFGFV F +P+EA +A+ L+G + K YV
Sbjct: 199 LFEMFEKYGSITSFKVMFRDDGSSRGFGFVAFEDPEEAEKAVTELHGKESPEGKTYYVGR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S + L + FS G + S +V +S GY +V + A A++ +
Sbjct: 5 YVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDTMN 64
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ +D +
Sbjct: 65 FDILKG--------RPMRIMWSQRDPSLRKSGVG----------NVFIKNLDRSIDNKAM 106
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV F A ++I +NG+L + K ++V
Sbjct: 107 YDTFSAFGNILSCKVAQDETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFV 166
Query: 236 TKRERTSYL 244
+++R L
Sbjct: 167 GRKDREKEL 175
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/247 (35%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
+ ++F+ +G I S + QDGKSKG+GFV Y +SA++A+E L + G ++Y
Sbjct: 259 EFEELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYV-- 316
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIELKQYFSQCGI 184
GR Q+ K + + E L K NL++KN++D +D +L++ F G
Sbjct: 317 ---GRAQKKRERTEELKKQYEA-IRLEKLSKYQGVNLFIKNLDDQIDSEKLEEEFKPFGT 372
Query: 185 ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
I+S K+M + G SKGFGFVCFS P+EA +AI +N + + KPLYVA+AQ K R S L
Sbjct: 373 ITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMINGKPLYVALAQRKDVRRSQL 432
Query: 245 RIMYAKQGP-----GLASTNFPVH--PTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSPL 297
+ A+ FP P +Y Y GF G N P P+P
Sbjct: 433 EQQIQARNQMRMQNAAAAGGFPGQFMPPMY------YGQQGFFPPGGRGNAAPFPGPNPQ 486
Query: 298 FLTRAGQ 304
+ R GQ
Sbjct: 487 MMMRRGQ 493
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 115/252 (45%), Gaps = 33/252 (13%)
Query: 3 VSLRALNNNDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLA 62
V+ + + AI +SL G R C + + D + + I F NL
Sbjct: 109 VNYHKFEDGEKAIDELNYSLVEG--------RPCRIMWSQRDPSARRSGDGNI-FIKNLH 159
Query: 63 STIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
IDN LH FS FG I S KV G+SK +GFV Y T E+A AIE + +
Sbjct: 160 PAIDNKALHDTFSAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDR 219
Query: 123 ELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
E++ + + +ES A++ N+YVKN+D TE+ E +
Sbjct: 220 EVFVGKHVSKKDRESKFEEMKANYTNIYVKNIDLGFTEK------------------EFE 261
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F+ G I+S+ + + G SKGFGFV + A A+ LN + + +YV AQ
Sbjct: 262 ELFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQK 321
Query: 237 KRERTSYLRIMY 248
KRERT L+ Y
Sbjct: 322 KRERTEELKKQY 333
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G Q S + V +D KS GY +V Y E AI++
Sbjct: 66 YVGELNPSVNEATLFEIFSPIG--QVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKAIDE 123
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + VEG R RI S D D N+++KN++ +D
Sbjct: 124 LNYSLVEG--------RPCRIMWSQR----------DPSARRSGDGNIFIKNLHPAIDNK 165
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ + G SK FGFV + + A AI +NG+L + + ++V
Sbjct: 166 ALHDTFSAFGRILSCKVATDDMGQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGK 225
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 226 HVSKKDRESKFEEMKA 241
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ KL + F FG I S+KV+V GKSKG+GFV +ST E A AI ++
Sbjct: 350 FIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQ 409
Query: 117 ATVEGMELY 125
+ G LY
Sbjct: 410 RMINGKPLY 418
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +N V+E L + FS G +SS+++ R T + + G+ +V + ++ +AI
Sbjct: 64 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSL--GYAYVNYHKFEDGEKAI 121
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+ LN L +P + +Q
Sbjct: 122 DELNYSLVEGRPCRIMWSQ 140
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 104/198 (52%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++DN LH+ FS G I S KV G+S+GYGFVQ+ T++SA NAIEKL
Sbjct: 137 FVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNG 196
Query: 117 ATVEGMELY-APSLRAGRIQESA---SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ P LR + +A F N+YVKNL + T++
Sbjct: 197 KVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDD----------------- 239
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
ELK F Q G ISS +MR G S+ FGFV F NP++A RA+ LNG F K YV
Sbjct: 240 -ELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVG 298
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER L Y +
Sbjct: 299 KAQKKSERELELSRRYEQ 316
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 156/365 (42%), Gaps = 75/365 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + +L F ++G I S+ V+ DGKS+ +GFV + E A A+E L
Sbjct: 228 YVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E Y + + + + Y + D + NLYVKN++D V + +L+
Sbjct: 288 KKFDDKEWYVGKAQK-KSERELELSRRYEQG-SSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G I+S K+MR G SKG GFV FS EA+R +N +NG + KPLYVA+AQ
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 237 KRERTSYLRIMYAKQ------------------GPGLASTNF---------PVHPTL-YQ 268
K ER + L+ +++ PGL F P P YQ
Sbjct: 406 KEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQ 465
Query: 269 RALQVYQAPGFRHGGMIPNGFSSPPPS---------------------PLFLTRAG---- 303
L P F G M+ G P P P + R
Sbjct: 466 PQLVPGMRPAFFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRY 525
Query: 304 QAAANNLTNG------------------NQRAAANN--SMLAVASPDERKDILGQGLYPL 343
+ N+ +G +Q +A + LA A+P +++ +LG+ LYPL
Sbjct: 526 PSGGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAGQLATSLANATPAQQRTLLGESLYPL 585
Query: 344 VKKLK 348
V +++
Sbjct: 586 VDQIE 590
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L+ F++ + S +V + S GYG+V YS + A A++KL
Sbjct: 49 YVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLN 108
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ + G + + NL+VKNLD V D L
Sbjct: 109 YSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSV------------------DNKTL 150
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS CG I S K+ + G S+G+GFV F D A AI LNG + + K ++V
Sbjct: 151 HEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFL 210
Query: 236 TKRERTS 242
K ER S
Sbjct: 211 RKEERES 217
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V + +L YF++ + SV++ R TN S G+G+V +SN D+A +A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATN--TSLGYGYVNYSNTDDAEKAM 104
Query: 217 NTLN 220
LN
Sbjct: 105 QKLN 108
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 104/198 (52%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++DN LH+ FS G I S KV G+S+GYGFVQ+ T++SA NAIEKL
Sbjct: 137 FVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNG 196
Query: 117 ATVEGMELY-APSLRAGRIQESA---SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ P LR + +A F N+YVKNL + T++
Sbjct: 197 KVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDD----------------- 239
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
ELK F Q G ISS +MR G S+ FGFV F NP++A RA+ LNG F K YV
Sbjct: 240 -ELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVG 298
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER L Y +
Sbjct: 299 KAQKKSERELELSRRYEQ 316
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 156/365 (42%), Gaps = 75/365 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + +L F ++G I S+ V+ DGKS+ +GFV + E A A+E L
Sbjct: 228 YVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E Y + + + + Y + D + NLYVKN++D V + +L+
Sbjct: 288 KKFDDKEWYVGKAQK-KSERELELSRRYEQG-SSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G I+S K+MR G SKG GFV FS EA+R +N +NG + KPLYVA+AQ
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Query: 237 KRERTSYLRIMYAKQ------------------GPGLASTNF---------PVHPTL-YQ 268
K ER + L+ +++ PGL F P P YQ
Sbjct: 406 KEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQ 465
Query: 269 RALQVYQAPGFRHGGMIPNGFSSPPPS---------------------PLFLTRAG---- 303
L P F G M+ G P P P + R
Sbjct: 466 PQLVPGMRPAFFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRY 525
Query: 304 QAAANNLTNG------------------NQRAAANN--SMLAVASPDERKDILGQGLYPL 343
+ N+ +G +Q +A + LA A+P +++ +LG+ LYPL
Sbjct: 526 PSGGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAGQLATSLANATPAQQRTLLGESLYPL 585
Query: 344 VKKLK 348
V +++
Sbjct: 586 VDQIE 590
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L+ F++ + S +V + S GYG+V YS + A A++KL
Sbjct: 49 YVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLN 108
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ + G + + NL+VKNLD V D L
Sbjct: 109 YSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSV------------------DNKTL 150
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS CG I S K+ + G S+G+GFV F D A AI LNG + + K ++V
Sbjct: 151 HEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFL 210
Query: 236 TKRERTS 242
K ER S
Sbjct: 211 RKEERES 217
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V + +L YF++ + SV++ R TN S G+G+V +SN D+A +A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATN--TSLGYGYVNYSNTDDAEKAM 104
Query: 217 NTLN 220
LN
Sbjct: 105 QKLN 108
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/191 (39%), Positives = 109/191 (57%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + + +F +FG I S+ + DGK KG+GFV Y E A+ A+E L
Sbjct: 111 YVKNINSETTDEQFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNE 170
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ + G +LY GR Q+ ++ K + E++ NL+VKN++D VD+
Sbjct: 171 SDLNGEKLYV-----GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 225
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+MRT G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 226 KLEEEFTPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 285
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 286 AQRKDVRRSQL 296
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 104/198 (52%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FGDI SSK+ ++GKSKG+GFV + + +A AI+ L
Sbjct: 18 FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNG 77
Query: 117 ATVEGMELY-APSL----RAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G E+Y AP L R +++E+ A + NLYVKN++ + T+E
Sbjct: 78 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDE--------------- 122
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ + F Q G I S + + G KGFGFV + N ++A +A+ LN + + LY
Sbjct: 123 ---QFQDLFIQFGPIVSASLEKDADGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLY 179
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER L+ Y
Sbjct: 180 VGRAQKKNERMHVLKKQY 197
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ D+D L FS G I S KI G SKGFGFV F A AI+ L
Sbjct: 16 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+L + + +YVA +++ER S L
Sbjct: 76 NGMLLNGQEIYVAPHLSRKERDSQLE 101
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 134/288 (46%), Gaps = 55/288 (19%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F KFGD+ SS + Q+GK +G+GFV ++T E+A A+E L
Sbjct: 243 YVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAVEDLNG 302
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G ELY GR Q+ K+ + E+ NLY+KN++DDVD+
Sbjct: 303 KDFRGQELYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 357
Query: 174 ELKQYFSQCGIISSVKIMRTNR-------------------------------------- 195
+L+Q F++ G I+S K+MR
Sbjct: 358 KLRQMFAEFGPITSAKVMRDTPQEGEEEVKDQEKDKENQKEAENEAESAESAEKKAEKKS 417
Query: 196 ----GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
G SKGFGFVCFSNPD+A +A+ +N + + KPLYVA+AQ K R S L +
Sbjct: 418 DKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQAR 477
Query: 252 GPGLASTNFPVHPTLYQRALQ--VYQAPGFRHGGMIPNGFSSPP-PSP 296
L + Q+ +Q V+ APG + G IP G P P P
Sbjct: 478 N-QLRMQQAAAAAGMPQQYMQPPVFYAPG-QQPGFIPQGGRGMPFPQP 523
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 97/195 (49%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+
Sbjct: 150 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKH--- 206
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L E + ++ D E + N+YVKNI DV +
Sbjct: 207 --VNGMLL----------NEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNIGPDVTDD 254
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G ++S + R G +GFGFV F+ + A +A+ LNG F + LYV
Sbjct: 255 EFRELFEKFGDVTSSSLARDQEGKPRGFGFVNFTTHEAAFKAVEDLNGKDFRGQELYVGR 314
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 315 AQKKHEREEELRKSY 329
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 32/224 (14%)
Query: 37 SALIASIDVHSAMATPTFIPFTVNLAS--------TIDNWKLHQIFSKFGDIQSSKVVVS 88
+A+ A + SA TPT P N AS ++ L ++FS+ G + S + V
Sbjct: 35 TAVSAGAEDASA-PTPTTAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVAS--IRVC 91
Query: 89 QDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYV 145
+D +S GY +V Y++ A+E+L ++G R RI S
Sbjct: 92 RDAVTRRSLGYAYVNYNSTPDGEKALEELNYTLIKG--------RPCRIMWSQR------ 137
Query: 146 KNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVC 205
D + N+++KN++ +D L F+ G I S K+ + G SKG+GFV
Sbjct: 138 ----DPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVH 193
Query: 206 FSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
+ + A +AI +NG+L ++K +YV K++R S M A
Sbjct: 194 YETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 6/206 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F G S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 250
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 251 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 308
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 309 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 367
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 368 KEERQAHLTNQYMQRMASVRAVPNPV 393
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 104/189 (55%), Gaps = 16/189 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 265
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 266 KVERQTELK 274
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 113/189 (59%), Gaps = 10/189 (5%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+NL +T + + +++F+K+G++ SS + ++DGK KG+GFV + E A A+E+L
Sbjct: 223 INLETT--DEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFEKHEDAAKAVEEL---- 276
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEIEL 175
G E +L R Q+ K + E++ NL+VKN++D +D+ +L
Sbjct: 277 -NGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVNLFVKNLDDSIDDEKL 335
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F+ G I+SV++MRT+ G SKGFGFVCFS P+EA +AI N + KPLYVAIAQ
Sbjct: 336 KEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 395
Query: 236 TKRERTSYL 244
K R S L
Sbjct: 396 RKDVRRSQL 404
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 111/221 (50%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
RLC + + D I F NL IDN L + FS FG+I SSK+ + GKS
Sbjct: 104 RLCRIMWSQRDPALRKKGSGNI-FIKNLHPDIDNKALFETFSVFGNILSSKIATDETGKS 162
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSL----RAGRIQES-ASFNNLYVKN 147
KG+GFV + + SA AI+ L + G E+Y AP L R +++E+ A F N+YVKN
Sbjct: 163 KGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKN 222
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
IN + + E + F++ G + S + +T G KGFGFV F
Sbjct: 223 ------------------INLETTDEEFNELFAKYGNVLSSSLEKTEDGKLKGFGFVDFE 264
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
++A +A+ LNG F + L+V+ AQ K ER L+ Y
Sbjct: 265 KHEDAAKAVEELNGTEFKDQTLFVSRAQKKYERMQELKKQY 305
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ L T+ L+ IFS G + S + V +D +K GY +V ++ E+ AIE+
Sbjct: 38 YVGELDPTVSEALLYDIFSPIGSV--SSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAIEQ 95
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S L K N+++KN++ D+D
Sbjct: 96 LNYTPIKG--------RLCRIMWSQRDPALRKKG----------SGNIFIKNLHPDIDNK 137
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L + FS G I S KI G SKGFGFV F + A AI+ LNG+L + + +YVA
Sbjct: 138 ALFETFSVFGNILSSKIATDETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAP 197
Query: 234 AQTKRERTSYLR 245
T++ER S L
Sbjct: 198 HLTRKERDSQLE 209
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ KL + F+ +G I S +V+ + +GKSKG+GFV +ST E A AI +
Sbjct: 322 FVKNLDDSIDDEKLKEEFAPYGTITSVRVMRTDNGKSKGFGFVCFSTPEEATKAITEKNQ 381
Query: 117 ATVEGMELY 125
V G LY
Sbjct: 382 QIVAGKPLY 390
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 6/206 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F G S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 250
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 251 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 308
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 309 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 367
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 368 KEERQAHLTNQYMQRMASVRAVPNPV 393
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 104/189 (55%), Gaps = 16/189 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 265
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 266 KVERQTELK 274
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 6/206 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F G S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 250
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 251 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 308
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 309 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 367
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 368 KEERQAHLTNQYMQRMASVRAVPNPV 393
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 104/189 (55%), Gaps = 16/189 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 265
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 266 KVERQTELK 274
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 130/243 (53%), Gaps = 24/243 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FSK S KV+ GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSK---TLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNG 250
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 251 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 304
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 305 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 363
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 364 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 415
Query: 291 SPP 293
PP
Sbjct: 416 RPP 418
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 105/189 (55%), Gaps = 16/189 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSKT---LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 265
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 266 KVERQAELK 274
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
+A + P + +L S + L++ FS G + S +V +S GY +V +
Sbjct: 4 AASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPI--------RIMWSQRDPSLRKSGVG----------NVFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+ FV F + A++AI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 163/374 (43%), Gaps = 84/374 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + + FG S + + G SKG+GFV Y ESA A+++L
Sbjct: 230 YIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNE 289
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G +LYA + +E+ + K L+++ + NLYVKN++D+ D+ L+
Sbjct: 290 KEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGV--NLYVKNLDDEWDDDRLR 347
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G I+S K+MR + G+S+GFGFVC+S+PDEA +A++ +NG + KPLYVA+AQ
Sbjct: 348 AEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 407
Query: 237 KRERTSYL----------RIMYAK-----QG-------------------PGLASTNFPV 262
K R L R+ Y QG PG+ P+
Sbjct: 408 KDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYGYPPMPGYGQPMPGMPPVRGPM 467
Query: 263 --HPTLYQRALQVYQ--------------------------APGF--RHGGM-IP----- 286
+P Q +Q APG+ R GG IP
Sbjct: 468 MGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNA 527
Query: 287 ----NGFSSPPPSPLFL-----TRAGQAAA---NNLTNGNQRAAANNSMLAVASPDERKD 334
NG SP +P L R GQ A Q + LA A+P E+K
Sbjct: 528 NGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQ 587
Query: 335 ILGQGLYPLVKKLK 348
+LG+ LYPL+ + +
Sbjct: 588 MLGEALYPLIHETQ 601
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 101/195 (51%), Gaps = 24/195 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F+ FGDI S KV ++GKS+G+ FV YST E+A AI+ +
Sbjct: 137 FIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNG 196
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +++E A F N+Y+KN+D +VT+
Sbjct: 197 MLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTD---------------- 240
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + G SV + R +G+SKGFGFV + N + A +A++ LN + K LY
Sbjct: 241 --AEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLY 298
Query: 231 VAIAQTKRERTSYLR 245
AQTK ER + L+
Sbjct: 299 AGRAQTKSEREAELK 313
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V Y A+E
Sbjct: 49 YVGELDPSVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G RI S D + N+++KN++ +D
Sbjct: 107 LNYSLIKGQSC--------RIMWSQR----------DPALRKTGQGNIFIKNLDQSIDNK 148
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ G S+GF FV +S + A+ AI +NG+L + K +YV
Sbjct: 149 ALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGH 208
Query: 234 AQTKRERTSYLRIMYAK 250
K+ER S + + A+
Sbjct: 209 HVGKKERLSKVEELRAQ 225
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + I + +F +FG+I S +V Q+ K +G+GFV Y+ E A A+++L
Sbjct: 264 YIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELND 323
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+G +LY GR Q+ K + + E ++K NL++KN+ D+VD+
Sbjct: 324 KEYKGKKLYV-----GRAQKKHEREEELRKRYEQ-MKLEKMNKYQGVNLFIKNLQDEVDD 377
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK FS G I+S KIM +G SKGFGFVC++ P+EAN+A+ +N + KPLYVA
Sbjct: 378 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 233 IAQTKRERTSYLR 245
+AQ K R S L
Sbjct: 438 LAQRKEVRRSQLE 450
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 102/200 (51%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV V + G +KGYGFV + + ESA AIE +
Sbjct: 171 FIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNG 230
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y + R ++S A+F N+Y+KNLD ++TE+
Sbjct: 231 MLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQ--------------- 275
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E F Q G I+S+ +++ +GFGFV ++N + A +A++ LN + K LY
Sbjct: 276 ---EFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLY 332
Query: 231 VAIAQTKRERTSYLRIMYAK 250
V AQ K ER LR Y +
Sbjct: 333 VGRAQKKHEREEELRKRYEQ 352
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 23/212 (10%)
Query: 41 ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYG 97
+S+ S A + + L ++ L ++F+ G + S + V +D +S GY
Sbjct: 67 SSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVAS--IRVCRDAVTRRSLGYA 124
Query: 98 FVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
+V + E A+++L ++G R RI S D ++
Sbjct: 125 YVNFHNMEDGEKALDELNYTLIKG--------RPCRIMWSQR----------DPSLRKMG 166
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
N+++KN++ +D L FS G I S K+ G +KG+GFV F + + AN AI
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIE 226
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
+NG+L + K +YV ++RER S + + A
Sbjct: 227 HVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 258
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 104/198 (52%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV G+SKGYGFVQ+ +ESA AIEKL
Sbjct: 115 FIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNG 174
Query: 117 ATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y + +ESA FNN+YVKNL + TEE
Sbjct: 175 MLLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEE----------------- 217
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F + G I+S +MR G +K FGFV F N D+A A+ LNG F K +V
Sbjct: 218 -DLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVG 276
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER + L++ + +
Sbjct: 277 KAQKKNERENELKVRFEQ 294
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 128/267 (47%), Gaps = 44/267 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ T L + F ++G I S+ V+ DGK+K +GFV + + A A+E L
Sbjct: 206 YVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALNG 265
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E + G+ Q+ N +K + +E DK NLY+KN++D + +
Sbjct: 266 KKFDDKEWFV-----GKAQKKNEREN-ELKVRFEQSMKEAADKFQGANLYIKNLDDSIGD 319
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LKQ FS G I+S K+MR GIS+G GFV FS P+EA++A+ +NG + KPLYVA
Sbjct: 320 DRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKALMEMNGKMVVSKPLYVA 379
Query: 233 IAQTKRERTSYLRI-------------------MYAKQGPGLASTNFPVHPTL------- 266
+AQ K +R + L+ MY GPGL F
Sbjct: 380 LAQRKEDRRARLQAQFSQIRPVAMAPSVAPRMPMYPPGGPGLGQQIFYGQAPPAIIPPQP 439
Query: 267 ---YQRALQVYQAPGFRHGGM-IPNGF 289
YQ+ L PG R GG +PN F
Sbjct: 440 GFGYQQQL----VPGMRPGGAPMPNFF 462
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 21/190 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + + L+ +F++ G + S +V +S GYG+V YS+ + A A++ L
Sbjct: 27 YVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARALDMLN 86
Query: 116 AATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G + S R +++S S N+++KN++ +D
Sbjct: 87 FTPLNGSPIRIMYSHRDPSVRKSGS-------------------GNIFIKNLDKGIDHKA 127
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S K+ + G SKG+GFV F N + A +AI LNG+L + K +YV
Sbjct: 128 LHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPF 187
Query: 235 QTKRERTSYL 244
K+ER S +
Sbjct: 188 LRKQERESAI 197
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 20/113 (17%)
Query: 146 KNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFG 202
+N++ + +LYV ++ +V + L F+Q G + SV++ R T R + G+G
Sbjct: 11 QNVNGGANAPYVTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSL--GYG 68
Query: 203 FVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+V +S+P +A RA++ LN + P +RIMY+ + P +
Sbjct: 69 YVNYSSPQDAARALDMLNFTPLNGSP---------------IRIMYSHRDPSV 106
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 106/207 (51%), Gaps = 22/207 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV G+SKGYGFVQY ESA NAI +L
Sbjct: 133 FIKNLDKSIDNKALYDTFSAFGNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNG 192
Query: 117 ATVEGMELY-APSLRAGRIQE---SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P +R + S FNN+YVKNL + TE+
Sbjct: 193 MLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTED----------------- 235
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F G I+SV ++R + G S+ FGFV F NPD+A A+ LNG F K LYV
Sbjct: 236 -NLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVG 294
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTN 259
AQ K ER L+ + K A N
Sbjct: 295 RAQKKSEREMQLKESFEKSNKETADRN 321
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 122/215 (56%), Gaps = 14/215 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + L ++F FG I S VV + DGKS+ +GFV + + A++A+E L
Sbjct: 224 YVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNG 283
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN----LYVKNINDDVDE 172
+ ELY GR Q+ S + +K + +E D+N LY+KN++ VD+
Sbjct: 284 KKFDDKELYV-----GRAQKK-SEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDD 337
Query: 173 IE-LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E LK+ F++ G I+S K+MR + G++KG GFV F + ++A RA+ +NG + KPLYV
Sbjct: 338 DEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYV 397
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
A+AQ K ER + L+ +++ P + PV P +
Sbjct: 398 ALAQRKEERRARLQAQFSQMRPVMPP---PVAPRM 429
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ + +L +FS+ G + S +V + + S GY +V +S+ A A+E L
Sbjct: 45 YVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEMLN 104
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G + RI S D + + N+++KN++ +D L
Sbjct: 105 FTPVNGKPI--------RIMYSNR----------DPSSRKSGAANIFIKNLDKSIDNKAL 146
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKG+GFV + + A AIN LNG+L + K +YV
Sbjct: 147 YDTFSAFGNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFV 206
Query: 236 TKRER 240
K+ER
Sbjct: 207 RKQER 211
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 106/207 (51%), Gaps = 22/207 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV G+SKGYGFVQY ESA NAI +L
Sbjct: 133 FIKNLDKSIDNKALYDTFSAFGNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNG 192
Query: 117 ATVEGMELY-APSLRAGRIQE---SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P +R + S FNN+YVKNL + TE+
Sbjct: 193 MLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTED----------------- 235
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F G I+SV ++R + G S+ FGFV F NPD+A A+ LNG F K LYV
Sbjct: 236 -NLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVG 294
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTN 259
AQ K ER L+ + K A N
Sbjct: 295 RAQKKSEREMQLKESFEKSNKETADRN 321
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 122/215 (56%), Gaps = 14/215 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + L ++F FG I S VV + DGKS+ +GFV + + A++A+E L
Sbjct: 224 YVKNLSESTTEDNLKELFGNFGPITSVIVVRADDGKSRCFGFVNFENPDDAVHAVEDLNG 283
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN----LYVKNINDDVDE 172
+ ELY GR Q+ S + +K + +E D+N LY+KN++ VD+
Sbjct: 284 KKFDDKELYV-----GRAQKK-SEREMQLKESFEKSNKETADRNQGTNLYLKNLDGSVDD 337
Query: 173 IE-LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E LK+ F++ G I+S K+MR + G++KG GFV F + ++A RA+ +NG + KPLYV
Sbjct: 338 DEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYV 397
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
A+AQ K ER + L+ +++ P + PV P +
Sbjct: 398 ALAQRKEERRARLQAQFSQMRPVMPP---PVAPRM 429
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ + +L +FS+ G + S +V + + S GY +V +S+ A A+E L
Sbjct: 45 YVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEMLN 104
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G + RI S D + + N+++KN++ +D L
Sbjct: 105 FTPVNGKPI--------RIMYSNR----------DPSSRKSGAANIFIKNLDKSIDNKAL 146
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKG+GFV + + A AIN LNG+L + K +YV
Sbjct: 147 YDTFSAFGNILSCKVATEMSGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFV 206
Query: 236 TKRER 240
K+ER
Sbjct: 207 RKQER 211
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 138/253 (54%), Gaps = 27/253 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +++ L ++F K+G I S +V++ +DGKS+G+GFV + ESA +A+++L
Sbjct: 186 YVKNFGDELNDETLKEMFEKYGTITSHRVMI-KDGKSRGFGFVAFENPESAEHAVQELNG 244
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ EG LY GR Q+ + +K + + E L + NLYVKN++D +D
Sbjct: 245 KELGEGKILYV-----GRAQKKNE-RQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSID 298
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ FS G I+S K+M G SKGFGFVCFS +EA +A+ +NG + KPLYV
Sbjct: 299 DERLRKEFSPFGTITSAKVM-LEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYV 357
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSS 291
A+AQ K +R ++L Y ++ +A+ Q Q++Q PG G +P +
Sbjct: 358 ALAQRKEDRKAHLASQYMQR---MANMRM-------QHMGQIFQ-PGGNGGYYVP---TL 403
Query: 292 PPPSPLFLTRAGQ 304
P P F + Q
Sbjct: 404 PQPQRFFSKQVSQ 416
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 105/191 (54%), Gaps = 16/191 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+ESA +IEK
Sbjct: 93 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEK--- 149
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L + GR + K + ++ E+ L N+YVKN D++++ L
Sbjct: 150 --VNGMLLNGKKVYVGRF--------IPRKEREKELGEKAKLFTNVYVKNFGDELNDETL 199
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIA 234
K+ F + G I+S ++M + G S+GFGFV F NP+ A A+ LNG L K LYV A
Sbjct: 200 KEMFEKYGTITSHRVMIKD-GKSRGFGFVAFENPESAEHAVQELNGKELGEGKILYVGRA 258
Query: 235 QTKRERTSYLR 245
Q K ER L+
Sbjct: 259 QKKNERQMELK 269
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + I L + FS G + S +V VV++ +S GY +V + A A++
Sbjct: 5 YVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTR--RSLGYAYVNFQQPADAERALDT 62
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++G R RI S +L + N+++KN++ ++D
Sbjct: 63 MNFDLIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNK 104
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ FS G I S K+ + +G SKG+GFV F + AN +I +NG+L + K +YV
Sbjct: 105 AMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGR 164
Query: 234 AQTKRERTSYL 244
++ER L
Sbjct: 165 FIPRKEREKEL 175
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 38/120 (31%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L D+TE IL + FS G + S+++ R T R +
Sbjct: 3 SLYVGDLHADITEAILFEK------------------FSSAGPVLSIRVCRDVVTRRSL- 43
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
G+ +V F P +A RA++T+N L +P +RIM++++ P L +
Sbjct: 44 -GYAYVNFQQPADAERALDTMNFDLIKGRP---------------IRIMWSQRDPSLRKS 87
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID+ LH FS FG+I S KV G+SKGYGFVQ+ ++E+A NAI+KL
Sbjct: 122 FIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYGFVQFDSEEAAQNAIDKLNG 181
Query: 117 ATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y + + ++SA FNN+YVKNL + T+E
Sbjct: 182 MLINDKQVYVGNFLRKQERDSALSNIKFNNIYVKNLAESTTDE----------------- 224
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F + G I+S +MR G SK FGFV F N D+A +A+ LNG F K YV
Sbjct: 225 -DLKSIFEEHGAITSAVVMRDADGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVG 283
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 284 KAQKKSERELELK 296
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 110/197 (55%), Gaps = 3/197 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA + + L IF + G I S+ V+ DGKSK +GFV + + A A+E L
Sbjct: 213 YVKNLAESTTDEDLKSIFEEHGAITSAVVMRDADGKSKCFGFVNFENVDDAAKAVEALNG 272
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E Y + + + + ++L+ E+ NLY+KN++D V++ +LK
Sbjct: 273 KKFDDKEWYVGKAQK-KSERELELKGRFEQSLES--VEKYQAVNLYIKNLDDSVNDEKLK 329
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M GIS+G GFV FS P+EA+RA+ LNG + KPLYVA AQ
Sbjct: 330 ELFSDFGTITSCKVMHDPSGISRGSGFVAFSTPEEASRALAELNGKMVVSKPLYVAPAQR 389
Query: 237 KRERTSYLRIMYAKQGP 253
K ER + L+ +++ P
Sbjct: 390 KEERRARLQAQFSQMRP 406
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 35/222 (15%)
Query: 40 IASIDVHSAMA-TP------------TFIP---FTVNLASTIDNWKLHQIFSKFGDIQSS 83
+A I VH A A P F+P + +L + + +L+ +F++ G + S
Sbjct: 1 MAQIQVHQAAAPVPGPNGVAAGPGAIQFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSV 60
Query: 84 KVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNN 142
+V +S GYG+V YS + A A++ L + L RI S
Sbjct: 61 RVCRDLSTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPL--------RIMYS----- 107
Query: 143 LYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFG 202
+ D + + + N+++KN++ +D L FS G I S K+ G SKG+G
Sbjct: 108 ----HRDPSIRKSGM-ANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYG 162
Query: 203 FVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
FV F + + A AI+ LNG+L + K +YV K+ER S L
Sbjct: 163 FVQFDSEEAAQNAIDKLNGMLINDKQVYVGNFLRKQERDSAL 204
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 20/104 (19%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDE 211
+ + +LYV +++ +V + +L F+Q G + SV++ R T R + G+G+V +SNP +
Sbjct: 27 QFVPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSL--GYGYVNYSNPQD 84
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A RA++ LN + KP LRIMY+ + P +
Sbjct: 85 AARALDVLNFTPLNNKP---------------LRIMYSHRDPSI 113
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 152/323 (47%), Gaps = 57/323 (17%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129
L ++F+ +G I S + +GKSKG+GFV Y E+A+ A+E+L + G ++Y
Sbjct: 249 LKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYV--- 305
Query: 130 RAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEIELKQYFSQCGIIS 186
GR Q+ K ++ E++ NL++KN++D +D +L++ F G I+
Sbjct: 306 --GRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTIT 363
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR- 245
S ++M G SKGFGFVCFS+P+EA +AI +N +F KPLYVA+AQ K R S L
Sbjct: 364 SARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQ 423
Query: 246 --------------------------IMYAKQG----PGLASTNFP-VHPTLYQRALQVY 274
+ Y +QG G + FP +P + R Q +
Sbjct: 424 QIQARNQMRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPGPNPQMIMRRGQPF 483
Query: 275 QAPGF--RHGGMIPNGFSSP----PPSPL-------FLTRAGQAAANNLTNGNQRAAANN 321
P R G PNG P PP + G N G Q+
Sbjct: 484 GGPEQWPRPG---PNGQPVPVYGIPPQAYSDFNGQNIRQQRGYYPNRNQNKGRQQRDL-A 539
Query: 322 SMLAVASPDERKDILGQGLYPLV 344
+++A A PD++K ILG+ LYP +
Sbjct: 540 AIIASAPPDQQKRILGEELYPKI 562
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
R C + + D + + I F NL IDN LH FS FG I S KV G+S
Sbjct: 121 RPCRIMWSQRDPSARRSGDGNI-FIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQS 179
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQES------ASFNNLYVKN 147
K +GFV Y T E+A AIE + + E++ + + +ES A+F N+YVKN
Sbjct: 180 KCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKN 239
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
+D + +EE +LK+ F+ G I+S+ + + G SKGFGFV +
Sbjct: 240 IDLEYSEE------------------DLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYE 281
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+ A +A+ LN + + +YV AQ KRER L+ Y
Sbjct: 282 GHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQY 322
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV---VSQDGKSKGYGFVQYSTQESALNAIEK 113
+ L ++++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 55 YVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKMEDGEKAIEE 112
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + +EG R RI S D D N+++KN++ +D
Sbjct: 113 LNYSPIEG--------RPCRIMWSQR----------DPSARRSGDGNIFIKNLHPAIDNK 154
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ + G SK FGFV + + A AI +NG+L + + ++V
Sbjct: 155 ALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 214
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S + A
Sbjct: 215 HISKKDRESKFEEIKA 230
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID+ KL + F FG I S++V+V + GKSKG+GFV +S+ E A AI ++
Sbjct: 339 FIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQ 398
Query: 117 ATVEGMELY 125
G LY
Sbjct: 399 RMFFGKPLY 407
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 129/240 (53%), Gaps = 17/240 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV-VSQDGKSKGYGFVQYSTQESALNAIEKLY 115
F NL + L+ +FSKFG I S ++ S D KSKG+GFV Y E A A+ L
Sbjct: 227 FVKNLPEDTTDAALNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNAL- 285
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
G EL +L R Q+ A +K D + E ++K NLYVKN++D +D
Sbjct: 286 ----NGTELAGKTLFVARAQKKAE-REAELKQRYDALRLERINKYQGINLYVKNLDDAID 340
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG--ILFHQKPL 229
E +++ F+ G I+SVKIMR +G S+GFGF+CFS+ +EA +A+ +NG I KPL
Sbjct: 341 EDKIRTEFAPFGTITSVKIMRDEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFPKPL 400
Query: 230 YVAIAQTKRERTSYLRIMYAKQ----GPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMI 285
YVA+AQ +R + L +A+Q G +A P Y Q++ A ++ GM+
Sbjct: 401 YVALAQRAEDRRAQLAAHFAQQRGNMGGRMAGGVIAGMPPQYMAGPQMFYAGVPQNRGMV 460
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 108/195 (55%), Gaps = 19/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L FS FG+I S KVV ++G SKGYGFV Y TQE+A AI K+
Sbjct: 136 FIKNLDKTIDNKALLDTFSAFGNILSCKVVTDENG-SKGYGFVHYETQEAAETAIAKVNG 194
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G +++ R R++ L + VT+ N++VKN+ +D +
Sbjct: 195 MVINGKQVFVGIFVPRKERVE------------LGEGVTKFT---NVFVKNLPEDTTDAA 239
Query: 175 LKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS+ G I+SV IM+ ++ SKGFGFVC+ ++A A+N LNG K L+VA
Sbjct: 240 LNDMFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVAR 299
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER + L+ Y
Sbjct: 300 AQKKAEREAELKQRY 314
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V E +L + F+ G + S+++ R T R S G+ +V F +A RA+
Sbjct: 46 SLYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRR--SLGYAYVNFHAAVDAERAL 103
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+TLN L KP + +Q
Sbjct: 104 DTLNYSLIRGKPCRIMWSQ 122
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 118/204 (57%), Gaps = 12/204 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKF-GDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ N +D+ +L + F ++ G S KV++ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGDDMDDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMN 253
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ G +Y GR Q+ A +K + + +E + K NLYVKN++D+++
Sbjct: 254 TKELNGRAIYV-----GRAQKKAE-RQTELKRKFEMLKQERMSKYQGVNLYVKNLDDNIN 307
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L + FS G I+S K+M G S+GFGFVCFS+P+EA +A+ +NG + KPLYV
Sbjct: 308 DERLWKEFSPFGTITSAKVM-MEEGRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 366
Query: 232 AIAQTKRERTSYLRIMYAKQGPGL 255
A+AQ K ER +L + ++ G+
Sbjct: 367 ALAQRKEERKMHLTSQFMQRLAGM 390
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 105/196 (53%), Gaps = 26/196 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESA------SFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ ++ + +E+ F N+Y+KN DD+
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEFGAKAREFTNVYIKNF------------------GDDM 202
Query: 171 DEIELKQYFSQ-CGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
D+ L++YF Q G SVK+M G SKGFGFV F ++A +A++ +N + + +
Sbjct: 203 DDERLREYFEQYVGKTLSVKVMMDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAI 262
Query: 230 YVAIAQTKRERTSYLR 245
YV AQ K ER + L+
Sbjct: 263 YVGRAQKKAERQTELK 278
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 20/184 (10%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L++ FS G I S +V +S GY +V + A A++ +
Sbjct: 17 DLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV 76
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
V+G + RI S +L + N+++KN++ +D L
Sbjct: 77 VKGKPI--------RIMWSQRDPSLRRSGVG----------NIFIKNLDKSIDNKALYDT 118
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
FS G I S K++ G SKG+GFV F + A++AI +NG+L + + ++V ++++
Sbjct: 119 FSAFGNILSCKVVCDENG-SKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 239 ERTS 242
ER +
Sbjct: 178 EREA 181
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 113/205 (55%), Gaps = 6/205 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L + F ++G S KV+ GKS+G+GFV + E A A++ +
Sbjct: 194 YIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KDLNGKAIFV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F+ G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFP 261
K ER ++L Y ++ +AS P
Sbjct: 371 KEERQAHLTNQYMQR---MASVRVP 392
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AI+K+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
++F Q G SVK+M + G S+GFGFV F ++A +A++ +NG + K ++V AQ
Sbjct: 209 EWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI+ +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 110/192 (57%), Gaps = 10/192 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + I + +F +FG+I S +V Q+ K +G+GFV Y+ E A A+++L
Sbjct: 250 YIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELND 309
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+G +LY GR Q+ ++ + + E ++K NL++KN+ D+VD+
Sbjct: 310 KEYKGKKLYV-----GRAQKKHEREE-ELRKAYEQMKLEKMNKYQGVNLFIKNLQDEVDD 363
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK FS G I+S KIM +G SKGFGFVC++ P+EAN+A+ +N + KPLYVA
Sbjct: 364 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 423
Query: 233 IAQTKRERTSYL 244
+AQ K R S L
Sbjct: 424 LAQRKEVRRSQL 435
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 102/200 (51%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV V + G +KGYGFV + + ESA AIE +
Sbjct: 157 FIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNG 216
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y + R ++S A+F N+Y+KNLD ++TE+
Sbjct: 217 MLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQ--------------- 261
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E F Q G I+S+ +++ +GFGFV ++N + A +A++ LN + K LY
Sbjct: 262 ---EFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLY 318
Query: 231 VAIAQTKRERTSYLRIMYAK 250
V AQ K ER LR Y +
Sbjct: 319 VGRAQKKHEREEELRKAYEQ 338
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 29/212 (13%)
Query: 47 SAMATPTFIP------FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYG 97
S++ATP+ + L ++ L ++F+ G + S + V +D +S GY
Sbjct: 53 SSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVAS--IRVCRDAVTRRSLGYA 110
Query: 98 FVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
+V + E A+++L ++G R RI S D ++
Sbjct: 111 YVNFHNMEDGEKALDELNYTLIKG--------RPCRIMWSQR----------DPSLRKMG 152
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
N+++KN++ +D L FS G I S K+ G +KG+GFV F + + AN AI
Sbjct: 153 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIE 212
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
+NG+L + K +YV ++RER S + + A
Sbjct: 213 HVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 244
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 164/374 (43%), Gaps = 84/374 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + + FG S + + G SKG+GFV Y ESA A+++L
Sbjct: 232 YIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKAVDELNE 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G +LYA + +E+ + K L+++ + NLY+KN++D+ D+ L+
Sbjct: 292 KEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGV--NLYIKNLDDEWDDDRLR 349
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G I+S K+MR + G+S+GFGFVC+S+PDEA +A++ +NG + KPLYVA+AQ
Sbjct: 350 AEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 409
Query: 237 KRERTSYL----------RIMYAK-----QG-------------------PGLASTNFPV 262
K R L R+ Y QG PG+ P+
Sbjct: 410 KDVRRQALESQIAQRAQQRMQYGTGFPGMQGYMGQPMYGYPPMPGYGQPMPGMPPVRGPM 469
Query: 263 --HPTLYQRALQVYQ--------------------------APGF--RHGGM-IP----- 286
+P Q +Q APG+ R GG IP
Sbjct: 470 MGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNA 529
Query: 287 NGFSSPPPSPL---------FLTRAGQAAA---NNLTNGNQRAAANNSMLAVASPDERKD 334
NG + PSP+ + R GQ A Q + LA A+P E+K
Sbjct: 530 NGPRNGGPSPVGAPQGLPAGSMPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQ 589
Query: 335 ILGQGLYPLVKKLK 348
+LG+ LYPL+ + +
Sbjct: 590 MLGEALYPLIHETQ 603
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 101/195 (51%), Gaps = 24/195 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F+ FGDI S KV ++GKS+G+ FV YST E+A AI+ +
Sbjct: 139 FIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNG 198
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +++E A F N+Y+KN+D +VT+
Sbjct: 199 MLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTD---------------- 242
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + G SV + R +G+SKGFGFV + + + A +A++ LN + K LY
Sbjct: 243 --AEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYEHHESARKAVDELNEKEVNGKKLY 300
Query: 231 VAIAQTKRERTSYLR 245
AQTK ER + L+
Sbjct: 301 AGRAQTKSEREAELK 315
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V Y A+E
Sbjct: 51 YVGELDPSVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADGERALEH 108
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G RI S D + N+++KN++ +D
Sbjct: 109 LNYSLIKGQSC--------RIMWSQR----------DPALRKTGQGNIFIKNLDQSIDNK 150
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ G S+GF FV +S + A+ AI +NG+L + K +YV
Sbjct: 151 ALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGH 210
Query: 234 AQTKRERTSYLRIMYAK 250
K+ER S + + A+
Sbjct: 211 HVGKKERLSKVEELRAQ 227
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 18/245 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG----KSKGYGFVQYSTQESALNAIE 112
+ N+ + + L + F FG + S+ VV +D ++G+GFV Y ++A A++
Sbjct: 171 YVKNIPTQWTDADLLKEFEPFGKVLSA--VVMKDNANPDHNRGFGFVNYEESDAAHKAVD 228
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNIND 168
L + E + G+ Q+ S ++N + + E ++K NLYVKN++D
Sbjct: 229 ALNGKSYPAGEGLDTEMYVGKAQKR-SERERELRNKFEQLKMERINKYQGVNLYVKNLDD 287
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+ + EL++ F++CG I+S ++MR G S+GFGFVCFS P+EAN+A+ +NG L KP
Sbjct: 288 QLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKP 347
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGL-ASTNFPV-HPTLYQRALQVYQAPG-----FRH 281
+YVA+AQ K R + L +A+Q G+ P+ P +Y A Y PG R
Sbjct: 348 VYVALAQRKEVRRAQLEAQHAQQRAGMVVGRGMPMGQPPMYGAAPMFYGQPGQLPPQARQ 407
Query: 282 GGMIP 286
G M P
Sbjct: 408 GFMYP 412
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 94/197 (47%), Gaps = 25/197 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++IDN L+ FS FG+I S KV + G SKGYG+V Y T E+A AI K+
Sbjct: 82 FVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKIN 141
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G E++ F + DD T N YVKNI + +L
Sbjct: 142 GMLIAGTEVFV-----------GHFQKRQDRPDADDWT------NCYVKNIPTQWTDADL 184
Query: 176 KQYFSQCGIISSVKIMRTNRGI--SKGFGFVCFSNPDEANRAINTLNGILFH-----QKP 228
+ F G + S +M+ N ++GFGFV + D A++A++ LNG +
Sbjct: 185 LKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTE 244
Query: 229 LYVAIAQTKRERTSYLR 245
+YV AQ + ER LR
Sbjct: 245 MYVGKAQKRSERERELR 261
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 19/150 (12%)
Query: 92 KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDD 151
+S GY +V + A A++ + +++G+ RI S +L +
Sbjct: 30 RSLGYAYVNFHNVADAERALDTMNFTSIKGVPC--------RIMWSQRDPSLRKSGVG-- 79
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPD 210
N++VKN++ +D L FS G I S K+ + G SKG+G+V + +
Sbjct: 80 --------NIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAE 131
Query: 211 EANRAINTLNGILFHQKPLYVAIAQTKRER 240
A AI +NG+L ++V Q +++R
Sbjct: 132 AATEAIAKINGMLIAGTEVFVGHFQKRQDR 161
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 109/202 (53%), Gaps = 7/202 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D L +F K+G ++S V+ +DG S+G+GFV Y + E A A+E +
Sbjct: 37 YIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNG 96
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL---DKNLYVKNINDDVDEI 173
+EG L GR Q+ + E I NLYVKN++D+V +
Sbjct: 97 QEIEGASGSTDILYVGRAQKKQERQQELRGQYEQQKQERIQRFQGVNLYVKNLDDNVTDD 156
Query: 174 ELKQYFSQCGIISSVKIMR----TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
EL++ F+ G I+S KIM + S+GFGFVCFS+P+EA +A+ +NG + KPL
Sbjct: 157 ELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 216
Query: 230 YVAIAQTKRERTSYLRIMYAKQ 251
YVA+AQ + +R ++L Y ++
Sbjct: 217 YVALAQRREDRKAHLTAQYMQR 238
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+Y+KN D DE L+ F + G++ SV +MR G S+GFGFV + + +EA A+ +
Sbjct: 35 NVYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAM 94
Query: 220 NGILFHQKP-----LYVAIAQTKRERTSYLRIMYAKQ 251
NG LYV AQ K+ER LR Y +Q
Sbjct: 95 NGQEIEGASGSTDILYVGRAQKKQERQQELRGQYEQQ 131
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 18/245 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG----KSKGYGFVQYSTQESALNAIE 112
+ N+ + + L + F FG + S+ VV +D ++G+GFV Y ++A A++
Sbjct: 225 YVKNIPTQWTDADLLKEFEPFGKVLSA--VVMKDNANPDHNRGFGFVNYEESDAAHKAVD 282
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNIND 168
L + E + G+ Q+ S ++N + + E ++K NLYVKN++D
Sbjct: 283 ALNGKSYPAGEGLDTEMYVGKAQKR-SERERELRNKFEQLKMERINKYQGVNLYVKNLDD 341
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+ + EL++ F++CG I+S ++MR G S+GFGFVCFS P+EAN+A+ +NG L KP
Sbjct: 342 QLSDDELREAFAECGTITSSRVMRDPNGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKP 401
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGL-ASTNFPV-HPTLYQRALQVYQAPG-----FRH 281
+YVA+AQ K R + L +A+Q G+ P+ P +Y A Y PG R
Sbjct: 402 VYVALAQRKEVRRAQLEAQHAQQRAGMVVGRGMPMGQPPMYGAAPMFYGQPGQLPPQARQ 461
Query: 282 GGMIP 286
G M P
Sbjct: 462 GFMYP 466
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 96/197 (48%), Gaps = 25/197 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++IDN L+ FS FG+I S KV + G SKGYG+V Y T E+A AI K+
Sbjct: 136 FVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKIN 195
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G E++ + + + A DD T N YVKNI + +L
Sbjct: 196 GMLIAGTEVFVGQFQKRQDRPDA-----------DDWT------NCYVKNIPTQWTDADL 238
Query: 176 KQYFSQCGIISSVKIMRTNRGI--SKGFGFVCFSNPDEANRAINTLNGILFH-----QKP 228
+ F G + S +M+ N ++GFGFV + D A++A++ LNG +
Sbjct: 239 LKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTE 298
Query: 229 LYVAIAQTKRERTSYLR 245
+YV AQ + ER LR
Sbjct: 299 MYVGKAQKRSERERELR 315
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 24/175 (13%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126
L +IF+ G + S + V +D +S GY +V + A A++ + +++G+
Sbjct: 61 LFEIFNAVGPVAS--IRVCRDAVTRRSLGYAYVNFHNVADAERALDTMNFTSIKGVPC-- 116
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIIS 186
RI S +L + N++VKN++ +D L FS G I
Sbjct: 117 ------RIMWSQRDPSLRKSGVG----------NIFVKNLDTSIDNKALYDTFSLFGNIL 160
Query: 187 SVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
S K+ + G SKG+G+V + + A AI +NG+L ++V Q +++R
Sbjct: 161 SCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGQFQKRQDR 215
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 105/207 (50%), Gaps = 22/207 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG I S KV G+SKGYGFVQY ESA NAI +L
Sbjct: 133 FIKNLDKSIDNKALFDTFSAFGTILSCKVATEISGESKGYGFVQYEQDESAQNAINELNG 192
Query: 117 ATVEGMELY-APSLRAGRIQE---SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P +R + S FNN+YVKNL + TE+
Sbjct: 193 MLLNDKKVYVGPFVRKQERENVFGSPKFNNVYVKNLSESTTED----------------- 235
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F + G I+SV ++R + G S+ FGFV F NPD+A RA+ LNG K LYV
Sbjct: 236 -NLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDLNGKKLDDKELYVG 294
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTN 259
AQ K ER L+ + K A N
Sbjct: 295 RAQKKSEREMQLKEKFEKSNKETADKN 321
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 117/199 (58%), Gaps = 11/199 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + L ++F KFG I S VV + DGKS+ +GFV + + A A+E L
Sbjct: 224 YVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDLNG 283
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN----LYVKNINDDVDE 172
++ ELY GR Q+ S + +K + +E DKN LY+KN++ VD+
Sbjct: 284 KKLDDKELYV-----GRAQKK-SEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDD 337
Query: 173 IE-LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E LK+ F++ G I+S K+MR + G++KG GFV F + ++A+RA+ +NG + KPLYV
Sbjct: 338 DEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSKPLYV 397
Query: 232 AIAQTKRERTSYLRIMYAK 250
A+AQ K ER + L+ +++
Sbjct: 398 ALAQRKEERRARLQAQFSQ 416
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ + +L +FS+ G + S +V + + S GY +V +S+ A A+E L
Sbjct: 45 YVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAMEMLN 104
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V G + RI S D + + N+++KN++ +D L
Sbjct: 105 FTPVNGKPI--------RIMYSNR----------DPSSRKSGAANIFIKNLDKSIDNKAL 146
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKG+GFV + + A AIN LNG+L + K +YV
Sbjct: 147 FDTFSAFGTILSCKVATEISGESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFV 206
Query: 236 TKRER 240
K+ER
Sbjct: 207 RKQER 211
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 124/219 (56%), Gaps = 14/219 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + D+ KL ++F + G + S + ++GKS+ +GFV + T E A +EKL+
Sbjct: 180 FIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLHD 239
Query: 117 ATVEGMELYAPSLRAGRIQESASFN-NLYVK--NLDDDVTEEILDKNLYVKNINDDVDEI 173
EG +++ GR Q+ A L VK L + + NLYVKN++D + +
Sbjct: 240 KEFEGKKIFV-----GRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDD 294
Query: 174 ELKQYFSQCGIISSVKIMRTNRGI----SKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
L+++F+ G I+S K+M T+ + SKGFGFVCF++ +EA +A+ +NG + KPL
Sbjct: 295 ILREHFAPYGNITSSKVM-TDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPL 353
Query: 230 YVAIAQTKRERTSYLRIMYAKQ-GPGLASTNFPVHPTLY 267
YVA+AQ K ER ++L+ Y ++ G+ FP + Y
Sbjct: 354 YVALAQRKDERKAHLQQQYMQRVTTGMRLQAFPTNQPQY 392
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 128/269 (47%), Gaps = 51/269 (18%)
Query: 21 SLYVGDL--DSTDLL--------------RLCSALIASI-------------DVHSAMAT 51
SLYVGDL ++T+ + R+C +I D A+ T
Sbjct: 12 SLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDT 71
Query: 52 PTFIPFTVNLASTIDN---W------KLHQI-FSKFGDIQSSKVVVSQDGKSKGYGFVQY 101
FI +VNLAS I + W K I FS FG+I S KV V+ G+SKGYGFV +
Sbjct: 72 MNFIQLSVNLASAISSSKTWTRLSTTKCCTIPFSAFGNILSCKVNVNLAGESKGYGFVHF 131
Query: 102 STQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNL 161
T+E+A+ AIEKL +GM + + GR + V+ D + N+
Sbjct: 132 ETEEAAVKAIEKL-----DGMLMNDKKVFVGRFKSRGE----RVREYGDRAKQFT---NV 179
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
++KN+ + D+ +L + F + G + SV + G S+ FGFV F + A + + L+
Sbjct: 180 FIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLHD 239
Query: 222 ILFHQKPLYVAIAQTKRERTSYLRIMYAK 250
F K ++V AQ K ER + L++ + K
Sbjct: 240 KEFEGKKIFVGRAQKKAERQAELKVKFEK 268
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 113/192 (58%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D S+GY FV + +Q +A AIE +
Sbjct: 101 FIKNLHKSIDNKTLYEHFSAFGKILSSKVM-SDDAGSRGYAFVHFQSQTAADRAIEAMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A ++G L+ + + +++ ++N ++ T N+Y+KN DD+D+ LK
Sbjct: 160 ALLKGCRLFVGPFKNRKDRQAE------LQNKANEFT------NVYIKNFGDDMDDERLK 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I SVK+M +RG SKGFGFV F + + A RA+ +NG +PL+V AQ
Sbjct: 208 EIFSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQK 267
Query: 237 KRERTSYLRIMY 248
K ER + L++M+
Sbjct: 268 KAERQAELKLMF 279
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IFS FG I S KV+ G+SKG+GFV + + E+A A+E +
Sbjct: 193 YIKNFGDDMDDERLKEIFSHFGKILSVKVMTDSRGRSKGFGFVSFDSHEAAQRAVEIMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G L+ RA + E + L + + + LY+KN++D +D+ L+
Sbjct: 253 KDLSGQPLFVG--RAQKKAERQAELKLMFEQMKQERYRRFRGVKLYIKNLDDSIDDERLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G IS VK+M+ G SKGFG +CFS+P+EA +A+ +NG + K L +A+AQ
Sbjct: 311 REFSSFGSISRVKVMKEE-GRSKGFGLICFSSPEEATKAMVEMNGRILGSKSLNIALAQ 368
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M + G S+G+ FV F + A+RAI +
Sbjct: 99 NVFIKNLHKSIDNKTLYEHFSAFGKILSSKVMSDDAG-SRGYAFVHFQSQTAADRAIEAM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L L+V + +++R + L+
Sbjct: 158 NGALLKGCRLFVGPFKNRKDRQAELQ 183
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 6/206 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F G S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 250
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 251 KELNGKQIYVG--RAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 308
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 309 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 367
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 368 KEERQAHLTNQYMQRMASVRAVPNPV 393
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 104/189 (55%), Gaps = 16/189 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 265
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 266 KVERQTELK 274
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/201 (41%), Positives = 104/201 (51%), Gaps = 28/201 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F FG+I S KV G+SKGYGFVQY E+A AIEKL
Sbjct: 216 FIKNLDKSIDNKALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNG 275
Query: 117 ATVEGMELY-APSLRAGRIQE------SASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P +R QE S FNN+YVKNL + TE+
Sbjct: 276 MLMNDKKVYVGPFVRK---QERDNSPGSVKFNNVYVKNLAETTTED-------------- 318
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+LK+ F + G I+SV +MR G SK FGFV F +PDEA A+ LNG F K
Sbjct: 319 ----DLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEW 374
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
YV AQ K ER L+ + K
Sbjct: 375 YVGRAQKKSEREMELKEKFEK 395
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 114/201 (56%), Gaps = 10/201 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA T L +IF KFG I S V+ DG+SK +GFV + + + A A++ L
Sbjct: 307 YVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNG 366
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
E Y GR Q+ + + KNL + ++ + NLY+KN++D VD+
Sbjct: 367 KKFSDKEWYV-----GRAQKKSEREMELKEKFEKNLQE-AADKYQNTNLYLKNLDDTVDD 420
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F++ G I+S K+MR + G S+G GFV F + D+A+RA+ +N + KPLYVA
Sbjct: 421 EKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVA 480
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K +R + L+ +++ P
Sbjct: 481 LAQRKEDRKARLQAQFSQMRP 501
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L ++ + +L +F++ G + S +V V S+ KS GY +V Y+T A A+E
Sbjct: 128 YVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSR--KSLGYAYVNYNTPADAARALEM 185
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + G R RI S N D + + N+++KN++ +D
Sbjct: 186 LNFTPING--------RPIRIMYS---------NRDPSLRKSGT-ANIFIKNLDKSIDNK 227
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F G I S K+ G SKG+GFV + + A+ AI LNG+L + K +YV
Sbjct: 228 ALHDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 287
Query: 234 AQTKRER 240
K+ER
Sbjct: 288 FVRKQER 294
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 124/219 (56%), Gaps = 14/219 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + D+ KL ++F + G + S + ++GKS+ +GFV + T E A +EKL+
Sbjct: 195 FIKNLPAEWDDAKLTEVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLHD 254
Query: 117 ATVEGMELYAPSLRAGRIQESASFN-NLYVK--NLDDDVTEEILDKNLYVKNINDDVDEI 173
EG +++ GR Q+ A L VK L + + NLYVKN++D + +
Sbjct: 255 KEFEGKKIFV-----GRAQKKAERQAELKVKFEKLKHERNQRYQGVNLYVKNLDDSITDD 309
Query: 174 ELKQYFSQCGIISSVKIMRTNRGI----SKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
L+++F+ G I+S K+M T+ + SKGFGFVCF++ +EA +A+ +NG + KPL
Sbjct: 310 ILREHFAPYGNITSSKVM-TDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPL 368
Query: 230 YVAIAQTKRERTSYLRIMYAKQ-GPGLASTNFPVHPTLY 267
YVA+AQ K ER ++L+ Y ++ G+ FP + Y
Sbjct: 369 YVALAQRKDERKAHLQQQYMQRVTTGMRLQAFPTNQPQY 407
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 103/194 (53%), Gaps = 12/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ FS FG+I S KV V+ G+SKGYGFV + T+E+A+ AIEKL
Sbjct: 102 FIKNLDKTIDNKMLYDTFSAFGNILSCKVNVNLAGESKGYGFVHFETEEAAVKAIEKL-- 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+GM + + GR + V+ D + N+++KN+ + D+ +L
Sbjct: 160 ---DGMLMNDKKVFVGRFKSRGE----RVREYGDRAKQFT---NVFIKNLPAEWDDAKLT 209
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G + SV + G S+ FGFV F + A + + L+ F K ++V AQ
Sbjct: 210 EVFGEHGSVMSVALATDENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQK 269
Query: 237 KRERTSYLRIMYAK 250
K ER + L++ + K
Sbjct: 270 KAERQAELKVKFEK 283
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 19/172 (11%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L+ FS+ G + S +V +S GY +V + E A AI+ T+ EL +
Sbjct: 27 LYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAID-----TMNFDELKGKA 81
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
+R Q + V N+ ++KN++ +D L FS G I S
Sbjct: 82 IRIMWSQRDPALRKSGVGNI-------------FIKNLDKTIDNKMLYDTFSAFGNILSC 128
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
K+ G SKG+GFV F + A +AI L+G+L + K ++V +++ ER
Sbjct: 129 KVNVNLAGESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGER 180
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ + E L FSQ G + S+++ R T R + G+ +V F P++A RAI
Sbjct: 12 SLYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSL--GYAYVNFQRPEDAERAI 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N K +RIM++++ P L
Sbjct: 70 DTMNFDELKGKA---------------IRIMWSQRDPAL 93
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 147/300 (49%), Gaps = 50/300 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + + ++F+K+G I S + +DGKSKG+GFV + + A A+++L+
Sbjct: 229 YCKNVDADVTDEEFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDELHD 288
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +G +L+ RA + E + ++ + NLY+KNI + D+ L+
Sbjct: 289 SDFKGQKLFV--ARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLR 346
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F+ G I+S KIMR G+S+GFGFVC+S P+EAN+A++ +NG + +PLYVA+AQ
Sbjct: 347 DEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQR 406
Query: 237 KRERTSYL--RIMY----------AKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM 284
K R L +IM A QG G +P P +Y Y PG G
Sbjct: 407 KDVRRQQLEAQIMQRNQLRLQQQAAAQGMG-----YP-GPGMY------YPQPGAFPGQ- 453
Query: 285 IPNGFSSPPPSPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLV 344
P G A + LA ASPDE+K +LG+ +YP V
Sbjct: 454 -PGGMGD----------------------EAPGALTAAALAKASPDEQKQMLGEAIYPKV 490
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 104/198 (52%), Gaps = 25/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV S+ G S GYGFV Y T E+A AI+ +
Sbjct: 137 FIKNLDAGIDNKALHDTFAAFGNILSCKVATSESG-SLGYGFVHYETAEAADAAIKHVNG 195
Query: 117 ATVEGMELYA-----PSLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +I+ES A F N+Y KN+D DVT+E
Sbjct: 196 MLLNDKKVYVGHHIPRKERQAKIEESRARFTNVYCKNVDADVTDE--------------- 240
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E ++ F++ G I+S + R G SKGFGFV F N DEA A++ L+ F + L+
Sbjct: 241 ---EFEKLFTKYGKITSCVLQRDEDGKSKGFGFVNFENHDEAQTAVDELHDSDFKGQKLF 297
Query: 231 VAIAQTKRERTSYLRIMY 248
VA AQ K ER LR Y
Sbjct: 298 VARAQKKSEREEELRRSY 315
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 24/197 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V + A+E+
Sbjct: 49 YVGELDPSVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 106
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + + R RI S D N+++KN++ +D
Sbjct: 107 LNYSLIRN--------RPCRIMWSQR----------DPALRRTGQGNIFIKNLDAGIDNK 148
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G S G+GFV + + A+ AI +NG+L + K +YV
Sbjct: 149 ALHDTFAAFGNILSCKVATSESG-SLGYGFVHYETAEAADAAIKHVNGMLLNDKKVYVGH 207
Query: 234 AQTKRERTSYLRIMYAK 250
++ER + + A+
Sbjct: 208 HIPRKERQAKIEESRAR 224
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IF+K+G S KV+ G+SKG+GFV + + E A A++ +
Sbjct: 228 YIKNFGENMDDQRLTEIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNG 287
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + +E + + + + + NLY+KN++D +++ L+
Sbjct: 288 KQLNGKQIYVG--RAQKKRERQTELKRHFEQIKQNQHIRYQGVNLYIKNLDDTINDEHLR 345
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M N G SKGFGFVCFS+ +A +A +NG L KPLYV++AQ
Sbjct: 346 KEFSPFGTITSAKVMMEN-GRSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYVSLAQR 404
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER +L+ Y + L S + PV
Sbjct: 405 KEERRMHLKNQYMYRLAHLRSISNPV 430
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 110/189 (58%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG I S KV+ ++G SKGYGFV + TQESA AIEK+
Sbjct: 136 FVKNLEKSIDNKALYDTFSTFGRILSCKVISDENG-SKGYGFVHFETQESAGKAIEKMNG 194
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++++ ++ R +ES L VK D N+Y+KN +++D+ L
Sbjct: 195 MLLNNLKVFVGRFKSRRERES----ELGVKAKDYT--------NIYIKNFGENMDDQRLT 242
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G SVK+M + G SKGFGFV F + ++A A++ +NG + K +YV AQ
Sbjct: 243 EIFAKYGPTLSVKVMTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQK 302
Query: 237 KRERTSYLR 245
KRER + L+
Sbjct: 303 KRERQTELK 311
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 24/204 (11%)
Query: 46 HSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVV---VSQDGKSKGYGFVQYS 102
HS +PT + +L + L++ FS G I S +V V+Q S GY +V +
Sbjct: 37 HSTPNSPTASLYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQH--SLGYAYVNFQ 94
Query: 103 TQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
+ A + + ++G + RI S D + N++
Sbjct: 95 HRAHAEWVLATMNLDVIKGNPI--------RIMWSQR----------DPGQRKRGVGNVF 136
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
VKN+ +D L FS G I S K++ G SKG+GFV F + A +AI +NG+
Sbjct: 137 VKNLEKSIDNKALYDTFSTFGRILSCKVISDENG-SKGYGFVHFETQESAGKAIEKMNGM 195
Query: 223 LFHQKPLYVAIAQTKRERTSYLRI 246
L + ++V +++RER S L +
Sbjct: 196 LLNNLKVFVGRFKSRRERESELGV 219
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 109/194 (56%), Gaps = 2/194 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NLA + L ++F FG I S+ V+ +G SK +GFV + + A A+E +
Sbjct: 33 FVKNLAEETTDEDLMEVFGGFGPISSAVVMRDANGNSKCFGFVNFKNADDAAKAVENING 92
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
E Y RA + E + + + L + TE+ NLY+KN++D +D+ +LK
Sbjct: 93 KVFNDKEWYVG--RAQKKSEREAELKVKFEQLRKERTEKFQGVNLYLKNVDDSIDDEKLK 150
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G ++S KIMR+ +G G GFV S+ DEA RA+N +NG + KPLYVA+AQ
Sbjct: 151 ELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYVAVAQR 210
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ +A+
Sbjct: 211 KDERRAKLQAQFAQ 224
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 18/114 (15%)
Query: 137 SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG 196
+ FNN++VKNL ++ T+E +L + F G ISS +MR G
Sbjct: 26 ATKFNNVFVKNLAEETTDE------------------DLMEVFGGFGPISSAVVMRDANG 67
Query: 197 ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAK 250
SK FGFV F N D+A +A+ +NG +F+ K YV AQ K ER + L++ + +
Sbjct: 68 NSKCFGFVNFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFEQ 121
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG I S K+ G SKGYGFVQ+ ++ESA NAI+KL
Sbjct: 124 FIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEESAQNAIDKLNG 183
Query: 117 ATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y + +E+A FNN+YVKNL + T+E
Sbjct: 184 MLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDE----------------- 226
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
EL ++F + G I+S IMR G S+ FGFV F NPD+A +A+ LNG K YV
Sbjct: 227 -ELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVG 285
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 286 KAQKKSEREQELK 298
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 114/201 (56%), Gaps = 10/201 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + + +L + F ++G I S+ ++ DGKS+ +GFV + + A A+E L
Sbjct: 215 YVKNLSESTTDEELMKFFGEYGTITSAVIMRDADGKSRCFGFVNFENPDDAAKAVEGLNG 274
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V+ E Y G+ Q+ + + + E DK NLY+KN++D + +
Sbjct: 275 KKVDDKEWYV-----GKAQKKSEREQELKGRFEQSIKESA-DKYQGVNLYLKNLDDTISD 328
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F++ G I+S K+MR GI +G GFV FS P+EA+RA+ +NG + KPLYVA
Sbjct: 329 EKLKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVA 388
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K +R + L+ +++ P
Sbjct: 389 LAQRKEDRRARLQAQFSQMRP 409
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
Query: 92 KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDD 151
+S GYG+V +S + A A++ L + R RI S D
Sbjct: 72 RSLGYGYVNFSNPQDAARALDVLNFTPLNN--------RPIRIMYSHR----------DP 113
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDE 211
+ N+++KN++ +D L FS G+I S KI G+SKG+GFV F + +
Sbjct: 114 SLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDSEES 173
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
A AI+ LNG+L + K +YV K++R + L
Sbjct: 174 AQNAIDKLNGMLINDKQVYVGHFLRKQDRENAL 206
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 20/104 (19%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDE 211
+ + +LYV ++ +V++ +L F+Q + SV++ R T R + G+G+V FSNP +
Sbjct: 29 QFVTTSLYVGDLEQNVNDAQLYDLFNQVVQVVSVRVCRDLTTRRSL--GYGYVNFSNPQD 86
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A RA++ LN + +P +RIMY+ + P L
Sbjct: 87 AARALDVLNFTPLNNRP---------------IRIMYSHRDPSL 115
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 135/294 (45%), Gaps = 70/294 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + ++F+K+G++ SS + +GKS+G+GFV ++T SA A+E+L
Sbjct: 248 YVKNINHEVTEEEFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAVEELNG 307
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G ELY GR Q+ K+ + E+ NLY+KN+ DDVD+
Sbjct: 308 KEFRGQELYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDVDDD 362
Query: 174 ELKQYFSQCGIISSVKIMR-------------------------------------TNR- 195
+L+Q FS+ G I+S K+MR T +
Sbjct: 363 KLRQMFSEFGPITSAKVMRDAPPEPPAGSEGDKEGKDKENKKESEKEGEGEAAEKKTEKK 422
Query: 196 -----GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS-------- 242
G SKGFGFVCFSNPD+A +A+ +N + KPLYVA+AQ K R S
Sbjct: 423 VERKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQA 482
Query: 243 --YLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPP 294
LR+ A GL P Y +A VY APG + G + P G P P
Sbjct: 483 RNQLRMQQAAAQAGL--------PQQYMQA-PVYYAPGQQPGFLPPGGRGMPFP 527
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 100/195 (51%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+
Sbjct: 155 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKH--- 211
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L E + ++ D E + N+YVKNIN +V E
Sbjct: 212 --VNGMLL----------NEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNINHEVTEE 259
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F++ G ++S + R N G S+GFGFV F+ A +A+ LNG F + LYV
Sbjct: 260 EFRELFAKYGEVTSSSLARDNEGKSRGFGFVNFTTHASAAKAVEELNGKEFRGQELYVGR 319
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 320 AQKKHEREEELRKSY 334
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y++ + A+E+
Sbjct: 67 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNSTQDGEKALEE 124
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 125 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 166
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A +AI +NG+L ++K +YV
Sbjct: 167 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGY 226
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 227 HIPKKDRQSKFEEMKA 242
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V +++ + +A+
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSL--GYAYVNYNSTQDGEKAL 122
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 123 EELNYTLIKGRP---------------CRIMWSQRDPALRKT 149
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 125/239 (52%), Gaps = 17/239 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N ++ KL ++F+ FG S +V+ + G+S+G+GFV ++ E A A++++
Sbjct: 194 YIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDEM-- 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLD---DDVTEEILDKNLYVKNINDDVDEI 173
G EL + GR Q+ + + D + NLYVKN++D +D+
Sbjct: 252 ---NGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDSIDDE 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ F+ G I+S K+M T+ S+GFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 RLRKEFAPYGTITSAKVM-TDGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
AQ + ER + L Y ++ L + P+ + YQ G+ P F SP
Sbjct: 368 AQRREERKAILTNKYMQRLATLRTMTSPI--------IDSYQQAGYYMTVPQPRSFYSP 418
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 109/190 (57%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ +IDN L+ FS FG+I S KVV + G SKGYGFV + T+E+A AIE
Sbjct: 102 FIKNMDESIDNKALYDTFSAFGNILSCKVVCDERG-SKGYGFVHFETEEAANRAIE---- 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
T+ GM L + G + K ++++ + L N+Y+KN +D ++ +L
Sbjct: 157 -TMNGMLLNDRKVFVGHFKSR--------KEREEELGSKALKFTNIYIKNFGEDYNDEKL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F+ G SV++M+ RG S+GFGFV F++ ++A +A++ +NG + K +YV AQ
Sbjct: 208 KEVFAAFGRTLSVRVMKDERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER L+
Sbjct: 268 KRLERQGELK 277
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 24/201 (11%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYST 103
S A P + +L + L+Q FS G I S +V ++++ +S GY ++ +
Sbjct: 4 SGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITR--RSLGYAYINFQQ 61
Query: 104 QESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYV 163
A A++ + ++G R RI S L + N+++
Sbjct: 62 PADAECALDTMNYDVIKG--------RPIRIMWSQRDPGLRKSGVG----------NIFI 103
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN+++ +D L FS G I S K++ RG SKG+GFV F + ANRAI T+NG+L
Sbjct: 104 KNMDESIDNKALYDTFSAFGNILSCKVVCDERG-SKGYGFVHFETEEAANRAIETMNGML 162
Query: 224 FHQKPLYVAIAQTKRERTSYL 244
+ + ++V ++++ER L
Sbjct: 163 LNDRKVFVGHFKSRKEREEEL 183
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 103/359 (28%), Positives = 160/359 (44%), Gaps = 73/359 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F+++G I S + DGKSKG+GFV + A A+++L+
Sbjct: 230 YAKNVDPDVTDEEFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVDELHD 289
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +G +L+ RA + E + ++ + NLY+KNI + D+ L+
Sbjct: 290 SDFKGQKLFV--ARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLR 347
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F+ G I+S KIMR G+S+GFGFVC+S P+EAN+A++ +NG + +PLYVA+AQ
Sbjct: 348 EEFAPFGAITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQR 407
Query: 237 KRERTSYL--RIMYAKQ---------------GPGL---ASTNFPVHP------TLYQRA 270
K +R L +IM Q GPG+ FP P Y A
Sbjct: 408 KDDRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAFPGQPGGMMPRPRYAPA 467
Query: 271 --------LQVYQAPGFRHGGMIPNGF--SSPP-------------------------PS 295
+ Y PG GM+P G+ + PP P
Sbjct: 468 GMMPQGMPMAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPAGVNGAPR 527
Query: 296 PLFLTRAGQ----------AAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLV 344
P GQ A Q A + LA ASP+E+K +LG+ +YP V
Sbjct: 528 PAGQPVPGQPMPRGPAARPAGRPQGEAAGQPGALTAAALAKASPEEQKQMLGEAIYPKV 586
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 105/198 (53%), Gaps = 25/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G S GYGFV Y T E+A AI+ +
Sbjct: 138 FIKNLDAGIDNKALHDTFAAFGNILSCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNG 196
Query: 117 ATVEGMELYAP-----SLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +I+ES A+F N+Y KN+D DVT
Sbjct: 197 MLLNDKKVYVGHHIPRKERQAKIEESRANFTNVYAKNVDPDVT----------------- 239
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
DE E ++ F++ G I+S + R + G SKGFGFV F + +EA A++ L+ F + L+
Sbjct: 240 DE-EFEKLFTRYGKITSCVLQRDDDGKSKGFGFVNFEDHNEAQTAVDELHDSDFKGQKLF 298
Query: 231 VAIAQTKRERTSYLRIMY 248
VA AQ K ER LR Y
Sbjct: 299 VARAQKKSEREEELRRSY 316
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V + A+E+
Sbjct: 50 YVGELDPSVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + + R RI S D N+++KN++ +D
Sbjct: 108 LNYSLIRN--------RPCRIMWSQR----------DPALRRTGQGNIFIKNLDAGIDNK 149
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G S G+GFV + + A AI +NG+L + K +YV
Sbjct: 150 ALHDTFAAFGNILSCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGH 208
Query: 234 AQTKRERTSYL 244
++ER + +
Sbjct: 209 HIPRKERQAKI 219
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 157/358 (43%), Gaps = 72/358 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F+ +G I S + DGKSKG+GFV + E A A+++L+
Sbjct: 228 YCKNVDPEVTDEQFEKLFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDELHD 287
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +L+ RA + E + ++ + NLY+KNI + D+ L+
Sbjct: 288 SDFHGQKLFV--ARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLR 345
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F+ G I+S KIMR G+S+GFGFVC+S P+EAN+A++ +NG + +PLYVA+AQ
Sbjct: 346 EEFAPFGTITSCKIMRAPSGVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQR 405
Query: 237 KRERTSYL--RIMYAKQ---------------GPGL---ASTNFPVHP------TLYQRA 270
K R L +IM Q GPG+ FP P Y A
Sbjct: 406 KDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAFPGQPGGMVPRPRYAPA 465
Query: 271 --------LQVYQAPGFRHGGMIPNGF--SSPP-------------------------PS 295
+ Y PG GM+P G+ + PP P
Sbjct: 466 GMMPQGMPMAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPAGVNGAPR 525
Query: 296 PLFLTRAGQ---------AAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLV 344
P GQ A Q + LA ASP+E+K +LG+ +YP V
Sbjct: 526 PAGQPVPGQPMPRGPGARPAGRPQEVAGQPGTLTAAALAKASPEEQKQMLGEAIYPKV 583
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 104/198 (52%), Gaps = 25/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G S GYGFV Y T E+A AI+ +
Sbjct: 136 FIKNLDAGIDNKALHDTFAAFGNILSCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNG 194
Query: 117 ATVEGMELYAP-----SLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +I+ES A F N+Y KN+D +VT+E +K
Sbjct: 195 MLLNDKKVYVGHHIPRKERQAKIEESRAKFTNVYCKNVDPEVTDEQFEK----------- 243
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
F+ G I+S + R + G SKGFGFV F + +EA +A++ L+ FH + L+
Sbjct: 244 -------LFTNYGKITSCVLQRDDDGKSKGFGFVNFEDHEEAQKAVDELHDSDFHGQKLF 296
Query: 231 VAIAQTKRERTSYLRIMY 248
VA AQ K ER LR Y
Sbjct: 297 VARAQKKSEREEELRRSY 314
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 24/197 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V + A+E+
Sbjct: 48 YVGELDPSVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 105
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + + R RI S D N+++KN++ +D
Sbjct: 106 LNYSLIRN--------RPCRIMWSQR----------DPALRRTGQGNIFIKNLDAGIDNK 147
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G S G+GFV + + A AI +NG+L + K +YV
Sbjct: 148 ALHDTFAAFGNILSCKVATNDTG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGH 206
Query: 234 AQTKRERTSYLRIMYAK 250
++ER + + AK
Sbjct: 207 HIPRKERQAKIEESRAK 223
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 131/246 (53%), Gaps = 20/246 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ T L +IF KFG I S V+ DG+SK +GFV + + + A A++ L
Sbjct: 216 FVKNLSETTTEDDLREIFGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNG 275
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ E Y GR Q+ + + KNL + ++ + NLY+KN++D VD+
Sbjct: 276 KKFDDKEWYV-----GRAQKKSEREMELKEKFEKNLQE-TADKYQNTNLYLKNLDDTVDD 329
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F++ G I+S K+MR + G S+G GFV F + ++A+RA+ +N + KPLYVA
Sbjct: 330 EKLRELFAEFGAITSCKVMRDSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVA 389
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQR-ALQVYQAPGFRHG---GMIPNG 288
+AQ K +R + L+ +++ P P+ PT+ R A+ PG G P
Sbjct: 390 LAQRKEDRKARLQAQFSQLRP------VPMAPTVGPRMAMFPPGVPGVGQQLFYGQPPPA 443
Query: 289 FSSPPP 294
F +P P
Sbjct: 444 FINPQP 449
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 102/198 (51%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ F FG+I S KV G+SKGYGFVQY E+A AIEKL
Sbjct: 125 FIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAHAAIEKLNG 184
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P +R S FNN++VKNL + TE DD+ E
Sbjct: 185 MLMNDKKVYVGPFIRKQERDNSPGNVKFNNVFVKNLSETTTE-------------DDLRE 231
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
I F + G I+SV +MR G SK FGFV F +PDEA A+ LNG F K YV
Sbjct: 232 I-----FGKFGTITSVVVMREGDGRSKCFGFVNFESPDEAALAVQDLNGKKFDDKEWYVG 286
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER L+ + K
Sbjct: 287 RAQKKSEREMELKEKFEK 304
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ + +L +F++ G + S +V KS GY +V Y+T A A+E L
Sbjct: 37 YVGDLDMSVQDAQLFDVFAQIGGVVSVRVCRDVTTRKSLGYAYVNYNTPADAARALEMLN 96
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G R RI S N D + + N+++KN++ +D L
Sbjct: 97 FTPING--------RPIRIMYS---------NRDPSLRKSGT-ANIFIKNLDKSIDNKAL 138
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F G I S K+ G SKG+GFV + + A+ AI LNG+L + K +YV
Sbjct: 139 YDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFI 198
Query: 236 TKRER 240
K+ER
Sbjct: 199 RKQER 203
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 136/260 (52%), Gaps = 31/260 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L +IF +G+I S+ ++V DGKS+ +GF+ + + + A A+E+L
Sbjct: 221 FVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNG 280
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y GR Q+ S + +K + ++ DK NLY+KN++D + +
Sbjct: 281 KKINDKEWYV-----GRAQKK-SEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGD 334
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS G I+S KIMR G+SKG GFV FS +EA++A+ +NG + KPLYVA
Sbjct: 335 DQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 394
Query: 233 IAQTKRERTSYLRIMYAK-----QGPGLASTNFPVHPTLYQRALQVY--QAP-------- 277
AQ K +R + L+ +++ P +A P++P + Q++ QAP
Sbjct: 395 FAQRKEDRKAMLQAQFSQVRPVPMTPSMA-PRLPMYPPMAPLGQQLFYGQAPPAIMPPQP 453
Query: 278 --GFRHG---GMIPNGFSSP 292
GF+ GM P G P
Sbjct: 454 GFGFQQQLVPGMRPGGAHMP 473
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 98/193 (50%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV + G+SKG+GFVQY E+A +AI+ L
Sbjct: 130 FIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNG 189
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +Y P LR + S FNN++VKNL + T+E
Sbjct: 190 MLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKE----------------- 232
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + F G I+S IM G S+ FGF+ F +PD+A RA+ LNG + K YV
Sbjct: 233 -DLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVG 291
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 292 RAQKKSEREIELK 304
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L +++ + +L+++FS+ G + S +V +S GY +V ++ A A+E L
Sbjct: 42 YVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLN 101
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
A + G + R+ S D + N+++KN++ +D L
Sbjct: 102 FAPLNGKPI--------RVMYSNR----------DPSSRRSGSANIFIKNLDKAIDHKTL 143
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKGFGFV + + A AI +LNG+L + KP+YV
Sbjct: 144 HDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFL 203
Query: 236 TKRER 240
K+ER
Sbjct: 204 RKQER 208
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAIN 217
++LYV ++ V + +L + FSQ G + SV++ R + S G+ +V F+NP +A RA+
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 218 TLNGILFHQKPLYV 231
LN + KP+ V
Sbjct: 99 LLNFAPLNGKPIRV 112
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 113/192 (58%), Gaps = 10/192 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ D KL + FS FG I S + + GKS+G+GFV + E A+ A+E+L
Sbjct: 231 YVKNINLNWDEDKLRETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEELNN 290
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++G +LY GR Q+ S +K+ + +E L+K NL+VKN++D +D+
Sbjct: 291 KDIDGQKLYV-----GRAQKK-SERMESLKHQYEAARQEQLNKYQGYNLFVKNLDDSIDD 344
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G I+S K+M + G SKGFGFVC+S+P+EA +AI ++ + KPLYVA
Sbjct: 345 AKLEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVA 404
Query: 233 IAQTKRERTSYL 244
+AQ K R S L
Sbjct: 405 LAQRKEVRRSQL 416
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 101/192 (52%), Gaps = 12/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S K+ ++G SKG+GFV Y ESA AIE +
Sbjct: 138 FIKNLHPAIDNKTLHDTFSAFGKILSCKIATDENGNSKGFGFVHYEESESAKAAIENVNG 197
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E+Y A + ++S ++ L + T N+YVKNIN + DE +L+
Sbjct: 198 MLLNDHEVYVGPHLAKKDRQSK------MRELIANFT------NVYVKNINLNWDEDKLR 245
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G ISS+ + + G S+GFGFV F ++A +A+ LN + LYV AQ
Sbjct: 246 ETFSPFGTISSIFLSKDESGKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQK 305
Query: 237 KRERTSYLRIMY 248
K ER L+ Y
Sbjct: 306 KSERMESLKHQY 317
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D SK GY +V + + A+E+
Sbjct: 50 YVGELDPSVTESDLFEVFSPIGQV--STIRVCRDAVSKQSLGYAYVNFQSHADGEKALEE 107
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G +A RI S +L N+++KN++ +D
Sbjct: 108 LNYTPIKG--------KACRIMWSQRDPSLRRNG----------SGNIFIKNLHPAIDNK 149
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G SKGFGFV + + A AI +NG+L + +YV
Sbjct: 150 TLHDTFSAFGKILSCKIATDENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGP 209
Query: 234 AQTKRERTSYLRIMYA 249
K++R S +R + A
Sbjct: 210 HLAKKDRQSKMRELIA 225
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ KL + F +G I S+KV++ GKSKG+GFV YS+ E A AI +++
Sbjct: 334 FVKNLDDSIDDAKLEEEFKPYGTITSAKVMLDDAGKSKGFGFVCYSSPEEATKAITEMHQ 393
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKN 147
V G LY + ++ S + +N
Sbjct: 394 RMVAGKPLYVALAQRKEVRRSQLSQQIQARN 424
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 132/262 (50%), Gaps = 34/262 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L ++FS +G I S+ V++ DGKS+ + FV + + + A A+E+L
Sbjct: 105 FVKNLSESTTKDDLVKVFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNG 164
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
+ E Y GR Q+ + + + D ++ +NLY+KN++D + +
Sbjct: 165 KKINDKEWYV-----GRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKNLDDGITDD 219
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G I+S KIMR G+SKG GFV FS +EA++A+ +NG + KPLYVA
Sbjct: 220 QLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAF 279
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTN-------FPVHPTLYQR----------------- 269
AQ K +R + L+ +++ P + + +P PTL Q+
Sbjct: 280 AQRKEDRKAMLQAQFSQMRPVPMTPSMTPRLPMYPPMPTLGQQLFYGQAPPAMMPPQPGY 339
Query: 270 ALQVYQAPGFRHGG--MIPNGF 289
Q PG R GG +PN F
Sbjct: 340 GFQQQLVPGMRPGGGAHMPNYF 361
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN LH FS FG I S KV + G+SKG+GFVQY +ESA +A++ L
Sbjct: 14 FIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSLNG 73
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +Y P LR S A FNN++VKNL + T++
Sbjct: 74 MLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKD----------------- 116
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS G I+S +M G S+ F FV F +PD+A RA+ LNG + K YV
Sbjct: 117 -DLVKVFSGYGTITSAVVMIGMDGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVG 175
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 176 RAQKKSEREMDLK 188
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K+ + G SKGFGFV + + A A+ +L
Sbjct: 12 NIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMKSL 71
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+L + KP+YV K+ER
Sbjct: 72 NGMLINDKPVYVGPFLRKQER 92
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 123/217 (56%), Gaps = 16/217 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ L +IF KFG I S+ V+ DG+SK +GFV + + + A A+++L
Sbjct: 222 YVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNG 281
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ E Y GR Q+ + + KNL + ++ + NLY+KN++D VD+
Sbjct: 282 KKFDDKEWYV-----GRAQKKSEREMELKEKFEKNLQE-AADKYQNTNLYLKNLDDSVDD 335
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F++ G I+S K+MR + G+S+G GFV F + ++A+RA+ +N + KPLYVA
Sbjct: 336 DKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVA 395
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQR 269
+AQ K +R + L+ +++ P P+ P++ R
Sbjct: 396 LAQRKEDRKARLQAQFSQLRP------VPLAPSVGPR 426
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 103/198 (52%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ F FG+I S KV G+SKGYGFVQY E+A AI+KL
Sbjct: 131 FIKNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKLNG 190
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P +R S FNN+YVKNL ++ TE+
Sbjct: 191 MLMNDKKVYVGPFIRKQERDNSPGQVKFNNVYVKNLSENTTED----------------- 233
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F + G I+S +MR G SK FGFV F +PD+A +A+ LNG F K YV
Sbjct: 234 -DLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVG 292
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER L+ + K
Sbjct: 293 RAQKKSEREMELKEKFEK 310
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ + +L +F++ G + S +V + + S GY +V YS+ A A+E L
Sbjct: 43 YVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEMLN 102
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + RI S N D + + N+++KN++ +D L
Sbjct: 103 FTPINGKPI--------RIMYS---------NRDPSLRKSGT-ANIFIKNLDKSIDNKAL 144
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F G I S K+ G SKG+GFV + + A AI+ LNG+L + K +YV
Sbjct: 145 YDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFI 204
Query: 236 TKRER 240
K+ER
Sbjct: 205 RKQER 209
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 127/259 (49%), Gaps = 24/259 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + +F+ +G I S + QDGKSKG+GFV Y +SA+ A+E L
Sbjct: 245 YVKNIDLEFSEKEFEDLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVEALND 304
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++Y GR Q+ K + + E L K NL+VKN++D +D
Sbjct: 305 KEINGQKIYV-----GRAQKKRERTEELKKQYEA-IRLEKLSKYQGVNLFVKNLDDQIDS 358
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G I+S K+M + G S+GFGFVCFS P+EA +AI +N + + KPLYVA
Sbjct: 359 EKLEEEFKPFGTITSAKVMVDDAGKSRGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVA 418
Query: 233 IAQTKRERTSYLRIMYAKQGP-----GLASTNFPVH--PTLYQRALQVYQAPGFRHGGMI 285
+AQ K R S L + A+ FP P +Y Q + PG R
Sbjct: 419 LAQRKDVRRSQLEQQIQARNQMRMQNAAAAAGFPGQFMPPMY-YGQQGFFPPGGRGNAPF 477
Query: 286 PNGFSSPPPSPLFLTRAGQ 304
P P+P + R GQ
Sbjct: 478 PG------PNPQMMMRRGQ 490
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 96/192 (50%), Gaps = 12/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV G+SK +GFV Y T E+A AIE +
Sbjct: 152 FIKNLHPAIDNKALHDTFSAFGRILSCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNG 211
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E+Y + + +ES + + + T N+YVKNI+ + E E +
Sbjct: 212 MLLNDREVYVGKHVSKKDRESK------FEEMKANYT------NIYVKNIDLEFSEKEFE 259
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F+ G I+S+ + + G SKGFGFV + A A+ LN + + +YV AQ
Sbjct: 260 DLFAPYGKITSIYLEKDQDGKSKGFGFVNYEEHKSAVEAVEALNDKEINGQKIYVGRAQK 319
Query: 237 KRERTSYLRIMY 248
KRERT L+ Y
Sbjct: 320 KRERTEELKKQY 331
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV---VSQDGKSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G + S +V VS+ KS GY +V Y E AI++
Sbjct: 64 YVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKFEDGEKAIDE 121
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + +E R RI S D D N+++KN++ +D
Sbjct: 122 LNYSLIEN--------RPCRIMWSQR----------DPSARRSGDGNIFIKNLHPAIDNK 163
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ + G SK FGFV + + A AI +NG+L + + +YV
Sbjct: 164 ALHDTFSAFGRILSCKVATDDLGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGK 223
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 224 HVSKKDRESKFEEMKA 239
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDEANRAI 216
+LYV +N V+E L + FS G +SS+++ R +SK G+ +V + ++ +AI
Sbjct: 62 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRD--AVSKKSLGYAYVNYHKFEDGEKAI 119
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+ LN L +P + +Q
Sbjct: 120 DELNYSLIENRPCRIMWSQ 138
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 114/201 (56%), Gaps = 10/201 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + + +L F ++G I S+ ++ DGKS+ +GFV + + A A+E L
Sbjct: 217 YVKNLSESTTDEELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNG 276
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ S +K + +E DK NLY+KN++D + +
Sbjct: 277 KKFDDKEWYV-----GKAQKK-SEREQELKGRFEQSIKEAADKYPGLNLYLKNLDDTISD 330
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F+ G I+S K+MR GIS+G GFV FS P+EA RA+ +NG +F KPLYVA
Sbjct: 331 EKLKEMFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMNGKMFAGKPLYVA 390
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K ER + L+ +++ P
Sbjct: 391 LAQRKEERRARLQAQFSQMRP 411
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG I S K+ G SKGYGFVQ+ +E+A NAI+KL
Sbjct: 126 FIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNG 185
Query: 117 ATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y + +E+A FNN+YVKNL + T+E
Sbjct: 186 MLINDKQVYVGHFLRKQDRENALSKTKFNNVYVKNLSESTTDE----------------- 228
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
EL F + G I+S IMR G S+ FGFV F NPD+A +A+ LNG F K YV
Sbjct: 229 -ELMINFGEYGTITSALIMRDADGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVG 287
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 288 KAQKKSEREQELK 300
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L +++ +L+ +F++ G + S +V +S GYG+V +S + A A++ L
Sbjct: 38 YVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVLN 97
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ R+ RI S D + N+++KN++ +D L
Sbjct: 98 FTPLNN--------RSIRIMYSHR----------DPSLRKSGTANIFIKNLDKAIDHKAL 139
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G+I S KI G+SKG+GFV F N + A AI+ LNG+L + K +YV
Sbjct: 140 HDTFSSFGLILSCKIATDASGLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFL 199
Query: 236 TKRERTSYL 244
K++R + L
Sbjct: 200 RKQDRENAL 208
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 20/104 (19%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDE 211
+ + +LYV +++ +V++ +L F+Q G + SV++ R T R + G+G+V FSNP +
Sbjct: 31 QFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSL--GYGYVNFSNPQD 88
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A RA++ LN + + +RIMY+ + P L
Sbjct: 89 AARALDVLNFTPLNNR---------------SIRIMYSHRDPSL 117
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 161/377 (42%), Gaps = 90/377 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + + FG S + + G SKG+GFV Y ESA A+++L
Sbjct: 232 YIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAKQAVDELNE 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ G +LYA GR Q + K+ ++ E NLY+KN++D+ D+
Sbjct: 292 KEINGKKLYA-----GRAQTKSEREAELKKSHEEKRIENEAKSAGVNLYIKNLDDEWDDD 346
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ F G I+S K+MR + G+S+GFGFVC+S+PDEA +A++ +NG + KPLYVA+
Sbjct: 347 RLRAEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVAL 406
Query: 234 AQTKRERTSYL----------RIMYAK-----QG-------------------PGLASTN 259
AQ K R L R+ Y QG PG+
Sbjct: 407 AQRKDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYGYPPMPGYGQPMPGMPPVR 466
Query: 260 FPV--HPTLYQRALQVYQ--------------------------APGF--RHGGM-IP-- 286
P+ +P Q +Q APG+ R GG IP
Sbjct: 467 GPMMGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRPGGARIPAA 526
Query: 287 -------NGFSSPPPSPLFL-----TRAGQAAA---NNLTNGNQRAAANNSMLAVASPDE 331
NG SP +P L R GQ A Q + LA A+P E
Sbjct: 527 PNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAE 586
Query: 332 RKDILGQGLYPLVKKLK 348
+K +LG+ LYPL+ + +
Sbjct: 587 QKQMLGEALYPLIHETQ 603
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 101/195 (51%), Gaps = 24/195 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F+ FGDI S KV ++GKS+G+ FV YST E+A AI+ +
Sbjct: 139 FIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNG 198
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +++E A F N+Y+KN+D +VT+
Sbjct: 199 MLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTD---------------- 242
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + G SV + R +G+SKGFGFV + N + A +A++ LN + K LY
Sbjct: 243 --AEFEDLVKPFGPTISVALSRDEQGVSKGFGFVNYENHESAKQAVDELNEKEINGKKLY 300
Query: 231 VAIAQTKRERTSYLR 245
AQTK ER + L+
Sbjct: 301 AGRAQTKSEREAELK 315
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V Y A+E
Sbjct: 51 YVGELDPSVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADGERALEH 108
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G RI S D + N+++KN++ +D
Sbjct: 109 LNYSLIKGQSC--------RIMWSQR----------DPALRKTGQGNIFIKNLDQSIDNK 150
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ G S+GF FV +S + A+ AI +NG+L + K +YV
Sbjct: 151 ALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGH 210
Query: 234 AQTKRERTSYLRIMYAK 250
K+ER S + + A+
Sbjct: 211 HVGKKERLSKVEELRAQ 227
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + KL ++F K+G I S KV+ DGKS+G+GFV + +A A+ L
Sbjct: 195 YVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADLNG 254
Query: 117 ATV-EGMELYA--PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ EG +Y +A R QE F L ++ L+ NLYVKN++D +D+
Sbjct: 255 KEIAEGKIMYVGRAQKKAERQQELKRKFEQLKIERLN-----RYQGVNLYVKNLDDTIDD 309
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F+ G I+SVK+M + G SKGFGFVCFS +EA +A+ +NG + KPLYVA
Sbjct: 310 ERLRKEFAPFGTITSVKVMMED-GRSKGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVA 368
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPG 278
+AQ K +R ++L Y ++ V Q QV+QA G
Sbjct: 369 LAQRKEDRKAHLASQYLQR----------VANIRMQHMGQVFQAGG 404
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 104/192 (54%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S +V + G SKGYGFV + T+E+A +I+++
Sbjct: 102 FIKNLDKNIDNKAMYDTFSAFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNG 161
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D+ + +
Sbjct: 162 MLLNGKKVYVGKFISRKEREKELGEKAKLFT--------------NVYVKNFGEDMTDDK 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK+ F + G I+S K+M + G S+GFGFV F +P+ A+RA+ LNG + K +YV
Sbjct: 208 LKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIMYVGR 267
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 268 AQKKAERQQELK 279
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ +L S I L + FS G + S + V +D +S GY +V + A A++
Sbjct: 14 YVGDLHSDITEAMLFEKFSSAGPVLS--IRVCRDAVTRRSLGYAYVNFQQPADAERALDT 71
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++G R RI S +L + N+++KN++ ++D
Sbjct: 72 MNFDIIKG--------RPIRIMWSQRDPSLRRSGVG----------NVFIKNLDKNIDNK 113
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ FS G I S ++ + G SKG+GFV F + AN++I+ +NG+L + K +YV
Sbjct: 114 AMYDTFSAFGNILSCRVAQDESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGK 173
Query: 234 AQTKRERTSYL 244
+++ER L
Sbjct: 174 FISRKEREKEL 184
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 38/117 (32%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L D+TE +L + FS G + S+++ R T R +
Sbjct: 12 SLYVGDLHSDITEAMLFEK------------------FSSAGPVLSIRVCRDAVTRRSL- 52
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+ +V F P +A RA++T+N + +P +RIM++++ P L
Sbjct: 53 -GYAYVNFQQPADAERALDTMNFDIIKGRP---------------IRIMWSQRDPSL 93
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 132/262 (50%), Gaps = 29/262 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ ++ ++F+ FG + S + +GKS+G+ FV Y E+A+ +IE L
Sbjct: 244 YVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLND 303
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+G +LY GR Q+ + K + E++ NL+VKN++D +D+
Sbjct: 304 QDYKGKKLYV-----GRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDE 358
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK+ F G ISSVK+M G SKGFGFV FS+P+EA+RAI+ +N + KPLYVA+
Sbjct: 359 KLKEEFQSFGTISSVKVMIDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVAL 418
Query: 234 AQTKRERTS----------YLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGG 283
AQ K R S LR+ A GL P P +Y + Q + PG R G
Sbjct: 419 AQRKDVRRSQLEQQIQARNQLRLQQAAAAGGLPGQFIPT-PFIYGQQPQ-FLPPGAR--G 474
Query: 284 MIPNGFSSPPPSPLFLTRAGQA 305
+PN P + R GQ
Sbjct: 475 PLPN-------QPFLIPRPGQG 489
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 98/194 (50%), Gaps = 16/194 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV G+SKG+GFV + + E+A AIE +
Sbjct: 151 FIKNLHPAIDNKALHDTFSAFGRILSCKVATDNFGQSKGFGFVHFESPEAAQAAIENVNG 210
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK--NLYVKNINDDVDEIE 174
+ E+Y A R ++S EE++ N+YVKNI+ + E E
Sbjct: 211 MLLNNNEVYVGPHVARRDRQSK--------------LEEVIKSFTNVYVKNIDLEASEEE 256
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+K+ F+ G ++S + + G S+GF FV + + A ++I +LN + K LYV A
Sbjct: 257 VKELFTPFGTVTSFYLEKDAEGKSRGFAFVNYEEHEAAVKSIESLNDQDYKGKKLYVGRA 316
Query: 235 QTKRERTSYLRIMY 248
Q K ER L+ Y
Sbjct: 317 QKKSERLEELKKQY 330
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 23/202 (11%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYST 103
S+++ T + L +I+ L +IFS G + S + V +D +S GY +V Y
Sbjct: 53 SSVSETTASLYVGELEPSINEALLFEIFSPIGQV--SSIRVCRDALTKRSLGYAYVNYHN 110
Query: 104 QESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYV 163
+ AI++L + V+G + RI S D + N+++
Sbjct: 111 VKDGEKAIDELNYSVVKGQPI--------RIMWSQR----------DPAKRRNGEGNVFI 152
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN++ +D L FS G I S K+ N G SKGFGFV F +P+ A AI +NG+L
Sbjct: 153 KNLHPAIDNKALHDTFSAFGRILSCKVATDNFGQSKGFGFVHFESPEAAQAAIENVNGML 212
Query: 224 FHQKPLYVAIAQTKRERTSYLR 245
+ +YV +R+R S L
Sbjct: 213 LNNNEVYVGPHVARRDRQSKLE 234
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 138/283 (48%), Gaps = 28/283 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + L IF ++G I S+ V+ DGKSK +GFV + + A ++E L
Sbjct: 214 YVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARSVEALNG 273
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ + +K + +E +DK NLYVKN++D + +
Sbjct: 274 KKFDDKEWYV-----GKAQKKTE-REVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIAD 327
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS+ G I+S K+MR GIS+G GFV FS +EA+RA+ +NG + KPLYVA
Sbjct: 328 DKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVA 387
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNF--------PVHPTLYQRALQVYQAP------- 277
+AQ K +R + L+ +++ P + + P P L Q+ P
Sbjct: 388 LAQRKEDRRARLQAQFSQMRPAAMAPSVGPRMSMYPPGAPGLGQQLFYGQGPPALIPPQP 447
Query: 278 --GFRHGGMIPNGFSSPPPSPLFLTRAGQAAANNLTNGNQRAA 318
G++H ++P P P F Q N G +R+
Sbjct: 448 GFGYQH-QLVPGMRPGAAPMPNFFVPMVQPGQPNQRPGGRRSG 489
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FG I S K+ G+SKGYGFVQ+ +ESA NA +KL
Sbjct: 123 FIKNLDKAIDNKALYDTFSTFGAILSCKIATDASGQSKGYGFVQFDNEESAKNATDKLNG 182
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y + +ESA+ FNN+YVKNL + T+E
Sbjct: 183 MLLNDKQVYVGPFVRKQERESATNKTKFNNVYVKNLLESTTDE----------------- 225
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F + G I+S +M+ G SK FGFV F N D+A R++ LNG F K YV
Sbjct: 226 -DLKNIFGEYGPITSAVVMQDGDGKSKCFGFVNFENADDAARSVEALNGKKFDDKEWYVG 284
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 285 KAQKKTEREVELK 297
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S + + L+ +F + G + S +V +S GYG+V Y + A A++ L
Sbjct: 35 YVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALDMLN 94
Query: 116 AATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G + S R I+ S + N+++KN++ +D
Sbjct: 95 FTPLNGKPIRIMYSFRDPSIRRSGT-------------------ANIFIKNLDKAIDNKA 135
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S KI G SKG+GFV F N + A A + LNG+L + K +YV
Sbjct: 136 LYDTFSTFGAILSCKIATDASGQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPF 195
Query: 235 QTKRERTS 242
K+ER S
Sbjct: 196 VRKQERES 203
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 20/104 (19%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDE 211
+ + +LYV ++ +V + L F Q G + SV++ R T R + G+G+V + N +
Sbjct: 28 QFVSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSL--GYGYVNYGNTQD 85
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A RA++ LN + KP +RIMY+ + P +
Sbjct: 86 AARALDMLNFTPLNGKP---------------IRIMYSFRDPSI 114
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 114/201 (56%), Gaps = 10/201 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA T L +IF KFG I S V+ DG+SK +GFV + + + A A++ L
Sbjct: 214 YVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNG 273
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
E Y GR Q+ + + KNL + ++ + NLY+KN++D VD+
Sbjct: 274 KKFSDKEWYV-----GRAQKKSEREIELKEKFEKNLQE-AADKYQNTNLYLKNLDDTVDD 327
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F++ G I+S K+MR + G S+G GFV F + D+A+RA+ +N + KPLYVA
Sbjct: 328 EKLRELFAEFGTITSCKVMRDSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVA 387
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K +R + L+ +++ P
Sbjct: 388 LAQRKEDRKARLQAQFSQMRP 408
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 102/198 (51%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ F FG+I S KV G+SKGYGFVQY E+A AIEKL
Sbjct: 123 FIKNLDKSIDNKALYDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNG 182
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P +R S FNN+YVKNL + TE+
Sbjct: 183 MLMNDKKVYVGPFVRKQERDNSPGNVKFNNVYVKNLAETTTED----------------- 225
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F + G I+SV +MR G SK FGFV F +PDEA A+ LNG F K YV
Sbjct: 226 -DLKEIFGKFGAITSVVVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVG 284
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER L+ + K
Sbjct: 285 RAQKKSEREIELKEKFEK 302
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L ++ + +L +F++ G + S +V V S+ KS GY +V Y+T A A+E
Sbjct: 35 YVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSR--KSLGYAYVNYNTPADAARALEM 92
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + G R RI S N D + + N+++KN++ +D
Sbjct: 93 LNFTPING--------RPIRIMYS---------NRDPSLRKSGT-ANIFIKNLDKSIDNK 134
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F G I S K+ G SKG+GFV + + A+ AI LNG+L + K +YV
Sbjct: 135 ALYDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGP 194
Query: 234 AQTKRER 240
K+ER
Sbjct: 195 FVRKQER 201
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 135/260 (51%), Gaps = 31/260 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L +IF +G+I S+ ++V DGKS+ +GF+ + + + A A+E+L
Sbjct: 221 FVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNG 280
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y GR Q+ S + +K + ++ DK NLY+KN++D + +
Sbjct: 281 KKINDKEWYV-----GRAQKK-SEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGD 334
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS G I+S KIMR G+SKG GFV FS +EA++A+ +NG + KPLYVA
Sbjct: 335 DQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 394
Query: 233 IAQTKRERTSYLRIMYAK-----QGPGLASTNFPVHPTLYQRALQVY--QAP-------- 277
AQ K +R L+ +++ P +A P++P + Q++ QAP
Sbjct: 395 FAQRKEDRKVMLQAQFSQVRPVPMTPSMA-PRLPMYPPMAPLGQQLFYGQAPPAIMPPQP 453
Query: 278 --GFRHG---GMIPNGFSSP 292
GF+ GM P G P
Sbjct: 454 GFGFQQQLVPGMRPGGAHMP 473
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 98/193 (50%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV + G+SKG+GFVQY E+A +AI+ L
Sbjct: 130 FIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNG 189
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +Y P LR + S FNN++VKNL + T+E
Sbjct: 190 MLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKE----------------- 232
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + F G I+S IM G S+ FGF+ F +PD+A RA+ LNG + K YV
Sbjct: 233 -DLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVG 291
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 292 RAQKKSEREIELK 304
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L +++ + +L+++FS+ G + S +V +S GY +V ++ A A+E L
Sbjct: 42 YVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLN 101
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
A + G + R+ S D + N+++KN++ +D L
Sbjct: 102 FAPLNGKPI--------RVMYSNR----------DPSSRRSGSANIFIKNLDKAIDHKTL 143
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKGFGFV + + A AI +LNG+L + KP+YV
Sbjct: 144 HDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFL 203
Query: 236 TKRER 240
K+ER
Sbjct: 204 RKQER 208
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAIN 217
++LYV ++ V + +L + FSQ G + SV++ R + S G+ +V F+NP +A RA+
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 218 TLNGILFHQKPLYV 231
LN + KP+ V
Sbjct: 99 LLNFAPLNGKPIRV 112
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 162/362 (44%), Gaps = 76/362 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + L IF +FG I S V+ DGKSK +GFV + + A A+E L
Sbjct: 200 YVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNG 259
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ L +K + +E++DK NLY+KN++D + +
Sbjct: 260 KKFDEKEWYV-----GKAQKKYE-RELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGD 313
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS+ G I+S K+MR GIS+G GFV FS +EA+RA+ +NG + KPLYVA
Sbjct: 314 DKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVA 373
Query: 233 IAQTKRERTSYLRI-------------------MYAKQGPGLASTNF------PVHPTLY 267
+AQ K ER + L+ MY PGL F + P
Sbjct: 374 LAQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQA 433
Query: 268 QRALQVYQAPGFRHGGM-IPNGF-----------------------SSPPPSPL----FL 299
Q PG R GG +PN F + P PL L
Sbjct: 434 GFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGAGPVQQNQQPVPLMQQQML 493
Query: 300 TRAGQA----AANNLTNGNQRAAANNSMLAV---------ASPDERKDILGQGLYPLVKK 346
R G+ N+ + AA + + A+PD+++ +LG+ LYPLV +
Sbjct: 494 PRGGRVYRYPPGRNMPDVPMPDAAIGQPMPISALASALANATPDQQRTMLGESLYPLVDQ 553
Query: 347 LK 348
L+
Sbjct: 554 LE 555
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH FS FG+I S K+ G+SKGYGFVQ+ +ESA NAI+KL
Sbjct: 109 FIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNG 168
Query: 117 ATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y + +E+A FNN+YVKNL + TEE
Sbjct: 169 MLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEE----------------- 211
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F + GII+SV +MR G SK FGFV F N D+A A+ LNG F +K YV
Sbjct: 212 -DLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVG 270
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 271 KAQKKYERELELK 283
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 26/207 (12%)
Query: 45 VHSAMATPTFIPFTV-----NLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGF 98
+ +A+A P + T +L I + +L+ +F + G + S +V +S GYG+
Sbjct: 4 IQAAVAGPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGY 63
Query: 99 VQYSTQESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
V YS + A A++ L + G + S R I++S +
Sbjct: 64 VNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGT------------------ 105
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
N+++KN++ +D L FS G I S KI G SKG+GFV F N + A AI+
Sbjct: 106 -ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAID 164
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYL 244
LNG+L + K +YV K+ER + L
Sbjct: 165 KLNGMLINDKQVYVGQFLRKQERETAL 191
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 124/243 (51%), Gaps = 25/243 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ++ KL ++F KFG + S V+ +GKSKG+GFV Y E+A ++E+L
Sbjct: 212 YVKNLHESVTEEKLREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEELDG 271
Query: 117 ATVEGMELYAPSL-RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ +E A + RA + E + + E++ NLY+KN+ D VD+ +L
Sbjct: 272 --YDKIEDKAWVVCRAQKKSEREAELKAKFDAERRERMEKMAGANLYIKNLEDTVDDAKL 329
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F++ G I+S ++MR G S+G FV FS+ DEA RA+ +NG + QKPLYVA+AQ
Sbjct: 330 RELFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAVTEMNGKMAGQKPLYVALAQ 389
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNG----FSS 291
K +R L+ +A QR + P GM P G +
Sbjct: 390 RKEDRRLRLQAQFA------------------QRQVAAGGMPNMGPYGMPPPGAPMYYGQ 431
Query: 292 PPP 294
PPP
Sbjct: 432 PPP 434
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 105/195 (53%), Gaps = 21/195 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ F++FG+I S+KV G+SKGYGFVQ+ T+E A +AIEK+
Sbjct: 123 FIKNLDKEIDNKALYDTFAQFGNIVSAKVATDLQGQSKGYGFVQFDTEEGAQSAIEKVNG 182
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ ++Y R R +FNN+YVKNL + VTEE +
Sbjct: 183 MLLNDKQVYVGPFQKRNERGGGPTTFNNVYVKNLHESVTEE------------------K 224
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
L++ F + G ++SV +M+ G SKGFGFVC+ + + A +++ L+G K V
Sbjct: 225 LREVFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSVEELDGYDKIEDKAWVVCR 284
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER + L+ +
Sbjct: 285 AQKKSEREAELKAKF 299
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 35/193 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + +L+++FS G + S +V ++++ +S GY +V + A AI+
Sbjct: 35 YCGDLDPSCTEAQLYELFSTIGPVVSIRVCRDLITR--RSLGYAYVNFQQGNDAARAIDA 92
Query: 114 LYAATVEGME---LYA---PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
L V G +Y+ P+LR + N+++KNLD +EI +K LY
Sbjct: 93 LNFQVVNGKPIRIMYSQRDPALR------KSGVGNIFIKNLD----KEIDNKALY----- 137
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
F+Q G I S K+ +G SKG+GFV F + A AI +NG+L + K
Sbjct: 138 ---------DTFAQFGNIVSAKVATDLQGQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDK 188
Query: 228 PLYVAIAQTKRER 240
+YV Q + ER
Sbjct: 189 QVYVGPFQKRNER 201
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 104/193 (53%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH FS FG+I S K+ G+SKGYGFVQ+ +ESA NAI+KL
Sbjct: 109 FIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAIDKLNG 168
Query: 117 ATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y + +E+A FNN+YVKNL + TEE
Sbjct: 169 MLINDKQVYVGQFLRKQERETALNKTKFNNVYVKNLSESTTEE----------------- 211
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F + GII+SV +MR G SK FGFV F N D+A A+ LNG F +K YV
Sbjct: 212 -DLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVG 270
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 271 KAQKKYERELELK 283
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 114/201 (56%), Gaps = 10/201 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + L IF +FG I S V+ DGKSK +GFV + + A A+E L
Sbjct: 200 YVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGDGKSKCFGFVNFENADDAAEAVEALNG 259
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ L +K + +E++DK NLY+KN++D + +
Sbjct: 260 KKFDEKEWYV-----GKAQKKYE-RELELKGRFEQSMKEVVDKFQGVNLYIKNLDDSIGD 313
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS+ G I+S K+MR GIS+G GFV FS +EA+RA+ +NG + KPLYVA
Sbjct: 314 DKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVA 373
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+AQ K ER + L+ +++ P
Sbjct: 374 LAQRKEERRARLQAQFSQMRP 394
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 26/207 (12%)
Query: 45 VHSAMATPTFIPFTV-----NLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGF 98
+ +A+A P + T +L I + +L+ +F + G + S +V +S GYG+
Sbjct: 4 IQAAVAGPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGY 63
Query: 99 VQYSTQESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
V YS + A A++ L + G + S R I++S +
Sbjct: 64 VNYSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGT------------------ 105
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
N+++KN++ +D L FS G I S KI G SKG+GFV F N + A AI+
Sbjct: 106 -ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQSKGYGFVQFDNEESAQNAID 164
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYL 244
LNG+L + K +YV K+ER + L
Sbjct: 165 KLNGMLINDKQVYVGQFLRKQERETAL 191
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 105/196 (53%), Gaps = 16/196 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV G+SKGYGFVQ+ +ESA +AIEK
Sbjct: 115 FIKNLDKAIDNKALHDTFSAFGGILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEK--- 171
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
V GM L + F +V+ + D++ + N+YVKN+ ++ + EL
Sbjct: 172 --VNGMLL----------NDKQVFVGPFVRRQERDLSGGVSKFNNVYVKNLGENTTDDEL 219
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F G ISS +MR N G SK FGFV F D+A +A+ LNG +K YV AQ
Sbjct: 220 KKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAAKAVEALNGKKQDEKEWYVGRAQ 279
Query: 236 TKRERTSYLRIMYAKQ 251
K ER + LR + ++
Sbjct: 280 KKSEREAELRAKFEQE 295
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 15/226 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + +L ++F +G I S+ V+ +GKSK +GFV + + A A+E L
Sbjct: 206 YVKNLGENTTDDELKKVFGAYGPISSAVVMRDNEGKSKCFGFVNFELADDAAKAVEALNG 265
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDEI 173
+ E Y GR Q+ + + + E+ NLY+KN++D VD+
Sbjct: 266 KKQDEKEWYV-----GRAQKKSEREAELRAKFEQERKSRIEKYQGVNLYLKNLDDAVDDE 320
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F++ G I+S K+M+ +G S+G GFV FS P+EA RA+ +N + KPLYVA+
Sbjct: 321 KLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAVTEMNTKMVGSKPLYVAL 380
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF 279
AQ K ER L+ +A+ PV PT+ + PG
Sbjct: 381 AQRKEERRVRLQAAFAQ-------MRTPVGPTVPTSLPMYHPGPGL 419
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + +L++IFS+ G + S +V ++++ +S GY +V Y + + A A+E
Sbjct: 27 YVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITR--RSLGYAYVNYHSAQDATRALEL 84
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L V G + RI S D + N+++KN++ +D
Sbjct: 85 LNFTPVNGKPI--------RIMFSHR----------DPSLRKSGAANIFIKNLDKAIDNK 126
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ + G SKG+GFV F + A AI +NG+L + K ++V
Sbjct: 127 ALHDTFSAFGGILSCKVATDSSGQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGP 186
Query: 234 AQTKRER 240
++ER
Sbjct: 187 FVRRQER 193
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 20/104 (19%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDE 211
+ + ++YV ++ +V E +L + FSQ G + S+++ R T R + G+ +V + + +
Sbjct: 20 QFVSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSL--GYAYVNYHSAQD 77
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A RA+ LN + KP +RIM++ + P L
Sbjct: 78 ATRALELLNFTPVNGKP---------------IRIMFSHRDPSL 106
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 119/215 (55%), Gaps = 13/215 (6%)
Query: 41 ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQ 100
+ ID A T +I N+ + + + +F + G++ SS + ++G+S+G+GFV
Sbjct: 217 SKIDEMKAQFTNLYIK---NIDPEVTDEEFEALFREQGNVTSSVIQRDEEGRSRGFGFVN 273
Query: 101 YSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK- 159
Y T E A A++ L G +L+ R Q+ A ++ + E L K
Sbjct: 274 YETHEEAQKAVDNLNDKDFHGRKLFV-----SRAQKKAEREE-ELRKAHEQARLEKLSKY 327
Query: 160 ---NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
NLYVKN++DDVD+ +L+ F G I+S K+MR ++G+SKGFGFVC+S+P+EA++A+
Sbjct: 328 QGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRDDKGVSKGFGFVCYSSPEEASKAV 387
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
+N + KPLYV+ AQ + R L A++
Sbjct: 388 AEMNNKMIGSKPLYVSHAQRREVRRQQLESQIAQR 422
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQ 104
A + P+ + L T+ L +IF+ G + S + V +D +S GY +V Y
Sbjct: 40 AGSPPSASLYVGELDPTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNA 97
Query: 105 ESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVK 164
A+E+L + ++ R RI S D + N+++K
Sbjct: 98 ADGERALEQLNYSLIKN--------RPCRIMWSQR----------DPALRKTGQGNIFIK 139
Query: 165 NINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF 224
N+++ +D L F+ G + S K+ G SKG+GFV + + A AI +NG+L
Sbjct: 140 NLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVHYETAEAAENAIKNVNGMLL 199
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAK 250
+ K +YV +++ER S + M A+
Sbjct: 200 NDKKVYVGHHISRKERQSKIDEMKAQ 225
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 114/199 (57%), Gaps = 3/199 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV +++ E+A NA+E++
Sbjct: 386 YIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEAAKNAVEEMNG 445
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +I+ A ++ + L + LY+KN++D +D+ +L+
Sbjct: 446 KDINGQLIFVGRAQK-KIERQAELKQMF-EQLRQERFRRCRGVKLYIKNLDDTIDDEKLR 503
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F+ G IS VK+M+ G SKGFG +CFS+ +EA +A+ +NG + KPL +A+AQ
Sbjct: 504 KEFASFGSISRVKVMQEE-GRSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALAQR 562
Query: 237 KRERTSYLRIMYAKQGPGL 255
ER + +G G+
Sbjct: 563 NEERKTCFDNQXVGRGGGM 581
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 110/192 (57%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 294 FIKNLDKSIDNKTLYEHFSTFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 352
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ ++ ++ + +ES +KN + T N+Y+KN DD+D++ LK
Sbjct: 353 TLLKNCRVFVSRFKSRKDRESE------LKNKASEFT------NVYIKNFGDDMDDMRLK 400
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M + G SKGFGFV F++ + A A+ +NG + + ++V AQ
Sbjct: 401 EVFSKYGTTLSVKVMTDSSGKSKGFGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQK 460
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 461 KIERQAELKQMF 472
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 292 NVFIKNLDKSIDNKTLYEHFSTFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 350
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V+ +++++R S L+
Sbjct: 351 NGTLLKNCRVFVSRFKSRKDRESELK 376
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 120/227 (52%), Gaps = 29/227 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N++ + L +IF +FG I S V+ DGKSK +GFV + + A ++E L
Sbjct: 212 FVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNG 271
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ + + +K+ + +E +DK NLY+KN++D + +
Sbjct: 272 QKFDDKEWYV-----GKAQKKSE-REIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGD 325
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F+Q G I+S K+MR G+S+G GFV FS+P+EA+RA+ +N + KPLYVA
Sbjct: 326 DKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVA 385
Query: 233 IAQTKRERTSYLRI-------------------MYAKQGPGLASTNF 260
+AQ K +R + L+ MY GPGL F
Sbjct: 386 LAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPPSGPGLGQQMF 432
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV G SKG+GFVQ+ ++E+A AI+KL
Sbjct: 121 FIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNG 180
Query: 117 ATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ + +ES FNN++VKN+ + +TEE
Sbjct: 181 MLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEE----------------- 223
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + F + G I+SV +MR G SK FGFV F N D+A ++ LNG F K YV
Sbjct: 224 -DLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVG 282
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 283 KAQKKSEREIELK 295
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 21/190 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L +++ +L+ +FS+ G + S +V +S GYG+V YS + A A++ L
Sbjct: 33 YVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDVLN 92
Query: 116 AATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G + S R I++S + N+++KN++ +D
Sbjct: 93 FTPLNGKPIRIMYSHRDPSIRKSGT-------------------GNIFIKNLDKGIDHKA 133
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S K+ G+SKG GFV F + + A +AI+ LNG+L + K ++V
Sbjct: 134 LHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPF 193
Query: 235 QTKRERTSYL 244
K+ER S +
Sbjct: 194 VRKQERESTI 203
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 20/104 (19%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDE 211
+ + +LYV ++ +V++ +L FSQ G + SV++ R T R + G+G+V +SNP +
Sbjct: 26 QFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSL--GYGYVNYSNPQD 83
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
A RA++ LN + KP +RIMY+ + P +
Sbjct: 84 AARALDVLNFTPLNGKP---------------IRIMYSHRDPSI 112
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 113/193 (58%), Gaps = 18/193 (9%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+NL +T + + ++FSK+G + S+ + ++DGK KG+GFV + E A A+E+L +
Sbjct: 228 INLETT--DEEFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFENHEDAAKAVEELNGSQ 285
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-------NLYVKNINDDVD 171
+ EL+ RA + E ++ L L+K NL++KN++D +D
Sbjct: 286 FKDQELFVS--RAQKKYER-------MQELKKQYEASRLEKMAKYQGVNLFIKNLDDSID 336
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ +LK+ F+ G I+SV++MRT G S+GFGFVCFS P+EA +AI N + KPLYV
Sbjct: 337 DEKLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 396
Query: 232 AIAQTKRERTSYL 244
AIAQ K R S L
Sbjct: 397 AIAQRKDVRRSQL 409
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 114/221 (51%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
RLC + + D I F NL S IDN L+ FS FG+I SSK+ + GKS
Sbjct: 109 RLCRIMWSQRDPALRKKGSANI-FIKNLHSDIDNKALYDTFSVFGNILSSKIATDETGKS 167
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSL----RAGRIQES-ASFNNLYVKN 147
KG+GFV + +A AI+ L + G E++ P L R +++ES A+F N+YVKN
Sbjct: 168 KGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKANFTNIYVKN 227
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
++ + T+E E + FS+ G + S + +T G KGFGFV F
Sbjct: 228 INLETTDE------------------EFTELFSKYGKVLSAALEKTEDGKLKGFGFVDFE 269
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
N ++A +A+ LNG F + L+V+ AQ K ER L+ Y
Sbjct: 270 NHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQY 310
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ +L ++ L+ IFS G + S + V +D +K GY +V ++ E+ AIEK
Sbjct: 43 YVGDLDPSVSEALLYDIFSPIGSV--SSIRVCRDAITKTSLGYAYVNFNDHEAGKKAIEK 100
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ D+D
Sbjct: 101 LNYTPIKG--------RLCRIMWSQR----------DPALRKKGSANIFIKNLHSDIDNK 142
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G SKGFGFV F + A AI+ LNG+L + + ++V
Sbjct: 143 ALYDTFSVFGNILSSKIATDETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGP 202
Query: 234 AQTKRERTSYLR 245
+++ER S L
Sbjct: 203 HLSRKERDSQLE 214
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ KL + F+ +G+I S +V+ +++GKS+G+GFV +ST E A AI +
Sbjct: 327 FIKNLDDSIDDEKLKEEFAPYGNITSVRVMRTENGKSRGFGFVCFSTPEEATKAITEKNQ 386
Query: 117 ATVEGMELY 125
V G LY
Sbjct: 387 QIVAGKPLY 395
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 112/200 (56%), Gaps = 3/200 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL ++F +G I S KV++ +DGKSK +GFV + T E+A A+E L
Sbjct: 186 YVKNFGDDVDDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFVAFETTEAAEAAVEALNG 245
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ +G LY RA + E + L E + NLYVKN++D +D+ L
Sbjct: 246 KDMGDGKALYV--ARAQKKAERQQELKRKFEELKKKRQESVYGVNLYVKNLDDTIDDERL 303
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCF P EA A+ +NG + KPLYVA+AQ
Sbjct: 304 RKEFSLFGTITSAKVMTDEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVALAQ 363
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K +R ++L Y + G+
Sbjct: 364 RKEDRKAHLASQYMRHMAGM 383
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 99/196 (50%), Gaps = 25/196 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN ++ FS FG+I S KV G SKGYGFV + T+E+A NAIEK+
Sbjct: 93 FIKNLDKTIDNKAIYDTFSAFGNILSCKVATDDKGTSKGYGFVHFETEEAANNAIEKVNG 152
Query: 117 ATVEGMELYAPSL-----RAGRIQESAS-FNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G ++Y R + E A F N+YVKN DDV
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKDLGEKAKLFTNVYVKNF------------------GDDV 194
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPL 229
D+ +LK+ F G I+S K+M G SK FGFV F + A A+ LNG + K L
Sbjct: 195 DDEKLKEMFDPYGKITSYKVMIKEDGKSKCFGFVAFETTEAAEAAVEALNGKDMGDGKAL 254
Query: 230 YVAIAQTKRERTSYLR 245
YVA AQ K ER L+
Sbjct: 255 YVARAQKKAERQQELK 270
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ ++G SKG+GFV F + AN AI +
Sbjct: 91 NVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDDKGTSKGYGFVHFETEEAANNAIEKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKDL 175
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D++E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLLRNKP---------------IRIMWSQRDPSL 84
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 36/253 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-- 114
+ N+ D+ +L+Q F++FG++ S+ V ++ G+GF+ ++ ESA+ A+E L
Sbjct: 219 YIKNVPYEWDDARLNQEFAQFGEVLSATVSREDTNQTLGFGFINFAEHESAVAAVEALNG 278
Query: 115 --YAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-------NLYVKN 165
Y T++G E+ + GR Q+ + + L E +D+ NLYVKN
Sbjct: 279 KEYTTTLDGEEITQ-QIYVGRAQKKSERE----RELRAKFEAEKMDRISKFQGVNLYVKN 333
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILF 224
++D V + L+ F+ G I+S ++M+ + G S+GFGFVC+S P+E+ RA+N +NG L
Sbjct: 334 LDDSVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLI 393
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAKQ--GPGL---------ASTNFPVHPTLYQRALQV 273
KP++VA+AQ + R + L +A + GPG A +P P QR
Sbjct: 394 ANKPIFVALAQRREVRRAQLEAQHANRAGGPGQPGMMRAPMGAPMGYPGMPMYMQRP--- 450
Query: 274 YQAPGFRHGGMIP 286
PG GGM P
Sbjct: 451 --GPG---GGMQP 458
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 97/204 (47%), Gaps = 26/204 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
F NL IDN +L+ FS FG+I S KVV ++G S GYG+V Y T E+A AIEKL
Sbjct: 130 FVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLD 189
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G E+ + +N D+ N Y+KN+ + D+ L
Sbjct: 190 GMLIDGQEV--------------QVGHFMRRNDRPDIDSWT---NCYIKNVPYEWDDARL 232
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH--------QK 227
Q F+Q G + S + R + + GFGF+ F+ + A A+ LNG + +
Sbjct: 233 NQEFAQFGEVLSATVSREDTNQTLGFGFINFAEHESAVAAVEALNGKEYTTTLDGEEITQ 292
Query: 228 PLYVAIAQTKRERTSYLRIMYAKQ 251
+YV AQ K ER LR + +
Sbjct: 293 QIYVGRAQKKSERERELRAKFEAE 316
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 33/234 (14%)
Query: 14 AILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIP--FTVNLASTIDNWKLH 71
A TP +G+ + T A +A +A P P + +LA ++ L
Sbjct: 2 ATTSTPVPADIGNENPT-----TEAPVAVPSASTASDNPFQTPSLYVGDLAPDVNESLLF 56
Query: 72 QIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
+IFS G + S + V +D +S GY +V + A A++ + + ++G
Sbjct: 57 EIFSAVGPVAS--IRVCRDAVTRRSLGYSYVNFHQMADAERAMDTMNFSMIKG------- 107
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
+ RI S +L + N++VKN+N+ +D +L FS G I S
Sbjct: 108 -KPCRIMWSQRDPSLRRSGVG----------NIFVKNLNEAIDNKQLYDTFSLFGNILSC 156
Query: 189 KIMRTNR--GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
K++ T+R G+S G+G+V + + AN AI L+G+L + + V + +R
Sbjct: 157 KVV-TDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGHFMRRNDR 209
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+
Sbjct: 155 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKH--- 211
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN---LYVKNINDDVDEI 173
V GM L E + ++ D E + N +YVKNIN +V E
Sbjct: 212 --VNGMLL----------NEKKVYVGYHIPKKDRQSKFEEMKANYTNVYVKNINLEVTEE 259
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ FS+ G ++S + R G S+GFGFV FS D A +A+ LNG F + LYV
Sbjct: 260 EFRELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAVEELNGKEFRGQELYVGR 319
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 320 AQKKHEREEELRKSY 334
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 82/139 (58%), Gaps = 10/139 (7%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+NL T + ++ ++FSK+G++ SS + Q+GKS+G+GFV +ST +SA A+E+L
Sbjct: 252 INLEVTEEEFR--ELFSKYGEVTSSTLARDQEGKSRGFGFVNFSTHDSAAKAVEELNGKE 309
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEIEL 175
G ELY GR Q+ K+ + E+ NLY+KN+ DD+D+ +L
Sbjct: 310 FRGQELYV-----GRAQKKHEREEELRKSYEAARAEKANKYQGVNLYIKNLADDIDDDKL 364
Query: 176 KQYFSQCGIISSVKIMRTN 194
+Q FS+ G I+S K+MR N
Sbjct: 365 RQMFSEFGPITSAKVMRDN 383
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y++ A+E+
Sbjct: 67 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 124
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 125 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 166
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A +AI +NG+L ++K +YV
Sbjct: 167 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGY 226
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 227 HIPKKDRQSKFEEMKA 242
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 55/109 (50%), Gaps = 19/109 (17%)
Query: 196 GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS----------YLR 245
G SKGFGFVCFSNPD+A +A+ +N + KPLYVA+AQ K R S LR
Sbjct: 438 GKSKGFGFVCFSNPDDATKAVAEMNQRMVEGKPLYVALAQRKDVRKSQLEASIQARNQLR 497
Query: 246 IMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPP 294
+ A GL P Y +A +Y APG + M P G P P
Sbjct: 498 MQQAAAQAGL--------PQQYMQA-PIYYAPGQQPNFMPPGGRGMPFP 537
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V +++ + +A+
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSL--GYAYVNYNSTADGEKAL 122
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 123 EELNYTLIKGRP---------------CRIMWSQRDPALRKT 149
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 127 bits (320), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 126/247 (51%), Gaps = 16/247 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ++D KL ++F G + S ++ +GKSKG+GFV + E+A A+EKL
Sbjct: 200 YVKNLHESVDEDKLKEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEKL-- 257
Query: 117 ATVEGME-LYAPSLRAGRIQESASFNNLYVKNLDDDVTE---EILDKNLYVKNINDDVDE 172
+G + + + R Q+ A D + E ++ NLY+KN+ D VD+
Sbjct: 258 ---DGYDKIEDKAWVVCRAQKKAEREAELKAKFDAERRERLEKMAGANLYIKNLEDTVDD 314
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F++ G I+S ++MR G S+G FV FS+ DEA RA+ +NG + KPLYVA
Sbjct: 315 AKLRELFAEFGTITSCRVMRDASGASRGSAFVAFSSADEATRAVTEMNGKMAGTKPLYVA 374
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
+AQ K +R L+ +A++ A N + PG + G P G P
Sbjct: 375 LAQRKEDRRMRLQAQFAQR----AVAN--GGMPGMPYGMPPPGVPGAMYYGQPPPGVMGP 428
Query: 293 P-PSPLF 298
P P P F
Sbjct: 429 PQPQPGF 435
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS+FG+I S+KV G SKGYGFVQ++ QE+A AI+K+
Sbjct: 111 FIKNLDKEIDNKALYDTFSQFGNIVSAKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVNG 170
Query: 117 ATVEGMELY-APSLRAG-RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ ++Y P R G R +FNN+YVKNL ++ VDE +
Sbjct: 171 MLLNDKQVYVGPFQRRGERGGGPTTFNNVYVKNL------------------HESVDEDK 212
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK+ F G ++SV IM+ G SKGFGFVCF + A+ A+ L+G K V
Sbjct: 213 LKEVFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAVEKLDGYDKIEDKAWVVCR 272
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER + L+ +
Sbjct: 273 AQKKAEREAELKAKF 287
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 35/193 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L S +L+++FS G + S +V ++++ +S GY +V + A AI+
Sbjct: 23 YCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITR--RSLGYAYVNFQQGADAARAIDV 80
Query: 114 LYAATVEGME---LYA---PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
L V G +Y+ P+LR + N+++KNLD +EI +K LY
Sbjct: 81 LNFNVVNGKPIRIMYSQRDPALR------KSGVGNIFIKNLD----KEIDNKALY----- 125
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
FSQ G I S K+ +G+SKG+GFV F+ + A +AI+ +NG+L + K
Sbjct: 126 ---------DTFSQFGNIVSAKVAADGQGVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDK 176
Query: 228 PLYVAIAQTKRER 240
+YV Q + ER
Sbjct: 177 QVYVGPFQRRGER 189
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 4/197 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N A +D KL Q+F+KFG I S V V DGK G+GFV + + A A++ +
Sbjct: 200 FVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQD 259
Query: 117 ATVEG--MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G +LY + + + A + Y + ++ + NLY+KN++D +D+
Sbjct: 260 YHLPGSDRKLYVSRFQK-KCERLAELDRKY-QLEKNERAKRYEGANLYLKNLDDAIDDDM 317
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L++ F + G + S K+MR++ G SKGFGFVCF PDEA +A+ + G + KPLYV++A
Sbjct: 318 LRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMA 377
Query: 235 QTKRERTSYLRIMYAKQ 251
Q K +R +++ Y ++
Sbjct: 378 QRKEDRKAFIASQYMQR 394
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++++ L+ FS FG+I S K+ V + KSKGYGFVQ+ T+E+A AI+
Sbjct: 107 FVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNG 166
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
EG +Y R+ R +++ N + N++VKN D +D+ +
Sbjct: 167 VIFEGKRIYVGRFQSRSERSEQAKRTTNCFT--------------NVFVKNFADILDKEK 212
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH----QKPLY 230
L+Q F++ G I S + G GFGFV F NPD+A +A+ + +H + LY
Sbjct: 213 LQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQD--YHLPGSDRKLY 270
Query: 231 VAIAQTKRERTSYLRIMY 248
V+ Q K ER + L Y
Sbjct: 271 VSRFQKKCERLAELDRKY 288
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 25/205 (12%)
Query: 40 IASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGY 96
+A DV S+ P+ + +L ++ L + FS G + S + V +D +S GY
Sbjct: 4 MADKDVASSAKKPSL--YVGDLHPDVNETVLLEKFSNIGRVLS--IRVCRDALTRRSLGY 59
Query: 97 GFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI 156
+V + E A A+E + V G R RI S + T +
Sbjct: 60 AYVNFERPEDAKQALETMNFDIVHG--------RPIRIMWSQRRPS----------TSRV 101
Query: 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
N++VKN+N V+ L FS G I S K+ + SKG+GFV F + A +AI
Sbjct: 102 AAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAI 161
Query: 217 NTLNGILFHQKPLYVAIAQTKRERT 241
+ NG++F K +YV Q++ ER+
Sbjct: 162 DGTNGVIFEGKRIYVGRFQSRSERS 186
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 117/228 (51%), Gaps = 48/228 (21%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
VN ++ D ++ ++F ++G+I SS + QDGKS+G+GFV Y+T ESA A+++L
Sbjct: 247 VNPEASDDEFR--ELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAVDELNGKD 304
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEIEL 175
+G +LY GR Q+ K+ + E+ NLY+KN++DDVD+ +L
Sbjct: 305 FKGQDLYV-----GRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDEKL 359
Query: 176 KQYFSQCGIISSVKIMR--------------------------------------TNRGI 197
+ FS+ G I+S K+MR G
Sbjct: 360 RHMFSEFGPITSAKVMRDAPSDGSDEEKEDEQEAEPKKEGNVVEADEEGSEKKGDKKFGK 419
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
SKGFGFVCFSNPD+A +A+ ++ + + KPLYVA+AQ K R S L
Sbjct: 420 SKGFGFVCFSNPDDATKAVAEMSQRMINGKPLYVALAQRKDVRKSQLE 467
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 100/193 (51%), Gaps = 14/193 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 150 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKH--- 206
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
V GM L + G +++ K+ E + N+YVKN+N + + E
Sbjct: 207 --VNGMLLNEKKVYVG--------HHIPKKDRQSKFEEMKANFTNIYVKNVNPEASDDEF 256
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F + G I+S + R G S+GFGFV ++ + A +A++ LNG F + LYV AQ
Sbjct: 257 RELFERYGEITSSSLARDQDGKSRGFGFVNYTTHESAYKAVDELNGKDFKGQDLYVGRAQ 316
Query: 236 TKRERTSYLRIMY 248
K ER LR Y
Sbjct: 317 KKHEREEELRKSY 329
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y++ A+E+
Sbjct: 62 YVGELDPSVTEAMLFELFSQIGAVAS--IRVCRDAVTRRSLGYAYVNYNSTSDGEKALEE 119
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 120 LNYTIIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 161
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A +AI +NG+L ++K +YV
Sbjct: 162 ALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGH 221
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 222 HIPKKDRQSKFEEMKA 237
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V +++ + +A+
Sbjct: 60 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSL--GYAYVNYNSTSDGEKAL 117
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN + +P RIM++++ P L T
Sbjct: 118 EELNYTIIKGRP---------------CRIMWSQRDPALRKT 144
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 112/197 (56%), Gaps = 4/197 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N A +D KL Q+F+KFG I S V V DGK G+GFV + + A A++ +
Sbjct: 200 FVKNFADILDKEKLQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQD 259
Query: 117 ATVEG--MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G +LY + + + A + Y + ++ + NLY+KN++D +D+
Sbjct: 260 YHLPGSDRKLYVSRFQK-KCERLAELDRKY-QLEKNERAKRYEGANLYLKNLDDAIDDDM 317
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L++ F + G + S K+MR++ G SKGFGFVCF PDEA +A+ + G + KPLYV++A
Sbjct: 318 LRRSFGEYGNVISAKVMRSDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMA 377
Query: 235 QTKRERTSYLRIMYAKQ 251
Q K +R +++ Y ++
Sbjct: 378 QRKEDRKAFIASQYMQR 394
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 101/198 (51%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++++ L+ FS FG+I S K+ V + KSKGYGFVQ+ T+E+A AI+
Sbjct: 107 FVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAIDGTNG 166
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
EG +Y R+ R +++ N + N++VKN D +D+ +
Sbjct: 167 VIFEGKRIYVGRFQSRSERSEQAKRTTNCFT--------------NVFVKNFADILDKEK 212
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH----QKPLY 230
L+Q F++ G I S + G GFGFV F NPD+A +A+ + +H + LY
Sbjct: 213 LQQLFAKFGKIVSCAVSVDGDGKPNGFGFVAFENPDDAEKAVKDMQD--YHLPGSDRKLY 270
Query: 231 VAIAQTKRERTSYLRIMY 248
V+ Q K ER + L Y
Sbjct: 271 VSRFQKKCERLAELDRKY 288
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 25/205 (12%)
Query: 40 IASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGY 96
+A DV S+ P+ + +L ++ L + FS G + S + V +D +S GY
Sbjct: 4 MADKDVASSAKKPSL--YVGDLHPDVNETVLLEKFSNIGRVLS--IRVCRDALTRRSLGY 59
Query: 97 GFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI 156
+V + E A A+E + V G R RI S + T +
Sbjct: 60 AYVNFERPEDAKQALETMNFDIVHG--------RPIRIMWSQRRPS----------TSRV 101
Query: 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
N++VKN+N V+ L FS G I S K+ + SKG+GFV F + A +AI
Sbjct: 102 AAGNVFVKNLNGSVNSKALYNKFSVFGNIVSCKLAVDEQSKSKGYGFVQFETEEAARKAI 161
Query: 217 NTLNGILFHQKPLYVAIAQTKRERT 241
+ NG++F K +YV Q++ ER+
Sbjct: 162 DGTNGVIFEGKRIYVGRFQSRSERS 186
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 49/233 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + + ++F+KFG++ SS + Q+GKS+G+GFV ++T E+A A+++L
Sbjct: 244 YVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNG 303
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN+ DDVD+
Sbjct: 304 KDFRGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDD 358
Query: 174 ELKQYFSQCGIISSVKIMRTN--------------------------------------- 194
+L+ FS+ G I+S K+MR +
Sbjct: 359 KLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGD 418
Query: 195 --RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G SKGFGFVCFSNPD+A +A+ +N + KPLYVA+AQ K R S L
Sbjct: 419 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLE 471
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 151 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKH--- 207
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN---LYVKNINDDVDEI 173
V GM L E + ++ D E + N +YVKNIN++V +
Sbjct: 208 --VNGMLL----------NEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDE 255
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F++ G ++S + R G S+GFGFV F+ + A +A++ LNG F + LYV
Sbjct: 256 EFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGR 315
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 316 AQKKHEREEELRKSY 330
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+T A+E+
Sbjct: 63 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 121 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGAGNIFIKNLDAAIDNK 162
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 163 ALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 222
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 223 HIPKKDRQSKFEEMKA 238
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 110/193 (56%), Gaps = 18/193 (9%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
++L +T + +K + F K G + S + DGK KG+GFV Y A+ A+E+L A
Sbjct: 235 IDLETTDEEFK--EFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELNGAE 292
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-------NLYVKNINDDVD 171
+ EL+ GR Q+ +++L L+K NL+VKN++D +D
Sbjct: 293 FKDQELFV-----GRAQKKYE----RIQSLKKQYESTRLEKMAKYQGVNLFVKNLDDSID 343
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ +L++ F+ G I+SVK+MRT G SKGFGFVCFS+P+EA +AI N + KPLYV
Sbjct: 344 DEKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYV 403
Query: 232 AIAQTKRERTSYL 244
AIAQ K R S L
Sbjct: 404 AIAQRKDVRRSQL 416
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 107/198 (54%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L FS FG+I SSK+ + GKSKG+GFV + + +A AI+ L
Sbjct: 138 FIKNLNQDIDNKALFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNG 197
Query: 117 ATVEGMELY-APSL----RAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G E+Y AP L R +++E+ A F N+YVKN+D + T+E
Sbjct: 198 MLLNGQEIYVAPHLTRKERDSQLEETKAHFTNVYVKNIDLETTDE--------------- 242
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E K++F + G ++SV + R G KGFGFV + + ++A +A+ LNG F + L+
Sbjct: 243 ---EFKEFFGKIGTVTSVALERGPDGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELF 299
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER L+ Y
Sbjct: 300 VGRAQKKYERIQSLKKQY 317
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ L ++ L+ +FS G + S + V +D +K GY +V +S E+ AIEK
Sbjct: 50 YVGELDPSVSEALLYDLFSPIGSVAS--IRVCRDAITKTSLGYAYVNFSDHEAGKQAIEK 107
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S +L K N+++KN+N D+D
Sbjct: 108 LNYTPIKG--------KLCRIMWSQRDPSLRKKG----------HGNIFIKNLNQDIDNK 149
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G SKGFGFV F AN AI+ LNG+L + + +YVA
Sbjct: 150 ALFDTFSVFGNILSSKIATDETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAP 209
Query: 234 AQTKRERTSYLR 245
T++ER S L
Sbjct: 210 HLTRKERDSQLE 221
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ KL + F+ FG+I S KV+ +++GKSKG+GFV +S+ E A AI +
Sbjct: 334 FVKNLDDSIDDEKLQEEFAPFGNITSVKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQ 393
Query: 117 ATVEGMELY 125
V G LY
Sbjct: 394 QIVAGKPLY 402
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 156/348 (44%), Gaps = 73/348 (20%)
Query: 57 FTVNLASTID----NWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIE 112
FT A ID + ++F +G I S + +GKSKG+GFV + ESA+ A++
Sbjct: 231 FTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVD 290
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDD 169
+L + G ++Y GR Q+ K ++ E++ NL++KN++D
Sbjct: 291 ELNDKEINGQKIYV-----GRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDT 345
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D +L++ F G I+S ++M G SKGFGFVCFS+P+EA +AI +N + + KPL
Sbjct: 346 IDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPL 405
Query: 230 YVAIAQTKRERTSYL----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF 279
YVA+AQ K R S L R+ A G+ P P Y Q PGF
Sbjct: 406 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIP--PMFYG------QQPGF 457
Query: 280 -----RHGG---------MIPNGFSSPP------------PSPLF-LTRAGQAAANNLTN 312
R G M+P G PP P P++ + NN N
Sbjct: 458 FPPNGRGNGPFPGPNPQMMMPRGQIPPPQGQWPRPGPNGQPVPVYGMPPVYGGDFNNGAN 517
Query: 313 G-------------NQRAAANNSMLAV---ASPDERKDILGQGLYPLV 344
G NQ+ + A+ A D++K ILG+ LYP +
Sbjct: 518 GGRQQRGYYPNRNQNQKGRQQKDLAAIIANAPADQQKRILGEELYPKI 565
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 99/198 (50%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG I S KV G SK +GFV Y T E+A AIE +
Sbjct: 142 FIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNG 201
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ E+Y + + +ES A+F N+Y KN+D D +EE
Sbjct: 202 MLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEE--------------- 246
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E K+ F G I+S+ + + + G SKGFGFV F N + A +A++ LN + + +Y
Sbjct: 247 ---EFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIY 303
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ KRER L+ Y
Sbjct: 304 VGRAQKKRERLEELKKQY 321
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 103/237 (43%), Gaps = 33/237 (13%)
Query: 28 DSTDLLRLCSALIASID-------------VHSAMATPTFIPFTV-NLASTIDNWKLHQI 73
+S + L L SA +AS + SA + T V L +++ L +I
Sbjct: 11 ESLEKLNLDSAPVASTEETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEI 70
Query: 74 FSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAG 132
FS G + S +V KS GY +V + E AIE L + +EG R
Sbjct: 71 FSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEG--------RPC 122
Query: 133 RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR 192
RI S +L D N+++KN++ +D L F+ G I S K+
Sbjct: 123 RIMWSQRDPSLRRNG----------DGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVAT 172
Query: 193 TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
+ GISK FGFV + + A AI +NG+L + + +YV +K++R S M A
Sbjct: 173 DDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKA 229
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 107/390 (27%), Positives = 173/390 (44%), Gaps = 114/390 (29%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL + D L + F +FG++ S KV+ + G SK +GF+ + + A A+E ++
Sbjct: 185 FVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMH 244
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+EG +LY GR Q+ A ++ +K + + +E + + NLYVKN++D +D
Sbjct: 245 EKEIEGKKLYC-----GRAQKKAERSS-ELKAKYEKIKQERIQRYQGVNLYVKNLDDSID 298
Query: 172 EIELKQYFSQCGIISSVKIMR--------------------------------------- 192
+ L++ F Q G I+S K++
Sbjct: 299 DEGLREAFKQFGNITSAKVITDLNEKDEVGQAKSDQAPEEEGEAVEEKKTEDSEAAGDAP 358
Query: 193 ------TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRI 246
+ +G SKGFGFVCFS+P+EA +A+ +NG +F KPLYV +AQ K +R ++L+
Sbjct: 359 GPEKPVSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQ 418
Query: 247 MYAKQ-----------GPGLASTNFP----VHPTLYQRALQ------------------- 272
Y ++ G + + NF + PT+ + +Q
Sbjct: 419 QYMQRVSTGIRMQAFMGNQVVNQNFQPPRYILPTMQGQPVQMFPQGTPMVRATPRWAPPN 478
Query: 273 -----VYQ--------APGFR-HGGMIPNG-FSSPPPSPLFLTRAGQAAANNLTNGNQRA 317
VYQ +P R IP+ PP P AG A LT
Sbjct: 479 QVRHIVYQSHSQQILASPDARVRNVQIPSEVIQMPPQMPHQNQPAGDQAPETLT------ 532
Query: 318 AANNSMLAVASPDERKDILGQGLYPLVKKL 347
+SMLA A+P E+K +LG+ L+PL++ +
Sbjct: 533 ---SSMLANANPQEQKQMLGERLFPLIQSM 559
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 99/201 (49%), Gaps = 26/201 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV +G SKG+GFV Y + ESA AIEK+
Sbjct: 93 FIKNLDRSIDNKALYDTFSSFGNILSCKVVCDING-SKGFGFVHYESDESAQRAIEKVNG 151
Query: 117 ATVEGMELYAPSL--RAGRIQE----SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+E +++ R R++E + F NL+VKNL D + L KN
Sbjct: 152 MLMEDKKVFVARFKSRNDRMREFGDAAKHFTNLFVKNLPDSWDTDALLKN---------- 201
Query: 171 DEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
F Q G + S K++ G+SK GF+ F D+A A+ ++ K L
Sbjct: 202 --------FEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKL 253
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
Y AQ K ER+S L+ Y K
Sbjct: 254 YCGRAQKKAERSSELKAKYEK 274
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D+ E L F G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 61 DTMNFDVIKGKP---------------IRIMWSQRDPSL 84
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 153/338 (45%), Gaps = 63/338 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N S +L +F +G I S +GKSKG+GF+ + ++A+ A+E+L
Sbjct: 235 FVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELND 294
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-------NLYVKNINDD 169
V G ++Y GR Q+ ++ L L+K NL+VKN++D
Sbjct: 295 KEVNGQKIYV-----GRAQKKRE----RIEELKKQYETTRLEKLSKYQGVNLFVKNLDDS 345
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+ L++ F G I+S K+M G SKGFGFVCFS P+EA +AI +N + KPL
Sbjct: 346 LTSEMLEEEFKPFGTITSAKVMVDETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPL 405
Query: 230 YVAIAQTKRERTSYL-RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF-----RHGG 283
YVA+AQ K R S L + + A+ + + P + + Q PGF R+ G
Sbjct: 406 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAAAGIPGQFMPPMFYGQQPGFFPGNGRNNG 465
Query: 284 ---------MIPNGFSSPP------------PSPLFLTRAGQAAANNLTNG--------- 313
M+P G PP P P++ G N NG
Sbjct: 466 PFPGPNPQMMMPRGQMPPPQGQWPRAGPNGQPVPVY----GMPPVYNDFNGPNGRQQRGY 521
Query: 314 -----NQRAAANN--SMLAVASPDERKDILGQGLYPLV 344
NQ+ + +++A A PD++K ILG+ LYP +
Sbjct: 522 FPNNRNQKGGRRDLAAIIASAPPDQQKRILGEELYPKI 559
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 97/198 (48%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV + G+SK +GFV Y T E+A AIE +
Sbjct: 142 FIKNLHPDIDNKALHDTFSAFGRILSCKVATDEHGRSKCFGFVHYETAEAADAAIENVNG 201
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
++ E++ + R + +E A+F N++VKN D TE
Sbjct: 202 MSLNDREVFVGKHISKKDRVAKFEEMKANFTNVFVKNFGSDFTE---------------- 245
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
EL F G I+S+ + + G SKGFGF+ F N D A +A+ LN + + +Y
Sbjct: 246 --AELAAMFEPYGKITSLYFEKDSEGKSKGFGFINFENHDAAVKAVEELNDKEVNGQKIY 303
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ KRER L+ Y
Sbjct: 304 VGRAQKKRERIEELKKQY 321
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L +++ L++IFS G Q S + V +D KS GY +V Y E A+E+
Sbjct: 54 YVGELNPSVNEAVLYEIFSPLG--QVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERALEQ 111
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G R RI S +L D N+++KN++ D+D
Sbjct: 112 LNYSLIDG--------RPCRIMWSQRDPSLRRNG----------DGNIFIKNLHPDIDNK 153
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ G SK FGFV + + A+ AI +NG+ + + ++V
Sbjct: 154 ALHDTFSAFGRILSCKVATDEHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFVGK 213
Query: 234 AQTKRERTSYLRIMYA 249
+K++R + M A
Sbjct: 214 HISKKDRVAKFEEMKA 229
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDEA 212
+ +LYV +N V+E L + FS G +SS+++ R ++K G+ +V + ++
Sbjct: 48 VTSASLYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRD--AVTKKSLGYAYVNYHKHEDG 105
Query: 213 NRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
RA+ LN L +P RIM++++ P L
Sbjct: 106 ERALEQLNYSLIDGRP---------------CRIMWSQRDPSL 133
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 131/258 (50%), Gaps = 22/258 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + I + +F +FG+I S+ + +GKS+G+GFV Y E A A+ +++
Sbjct: 337 YVKNLDTDITEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMHE 396
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++G L+ GR Q+ + + ++ + +E +K NLYVKN++DDVD+
Sbjct: 397 KEIKGKVLFV-----GRAQKKSERQSELARS-HEAAKQERQNKYAGVNLYVKNLDDDVDD 450
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L+ F G I+S K+MR R ISKGFGFVCFS PDEA +A+ +N + KPLYV+
Sbjct: 451 DKLRAEFEAFGTITSCKVMRNERDISKGFGFVCFSTPDEATKAVTEMNNKMIGTKPLYVS 510
Query: 233 IAQTKRERTSYL--RIMYAKQ---------GPGLASTNFPVHPTLYQRALQVYQAP-GFR 280
+AQ + R L +IM Q GPG P Q + G+
Sbjct: 511 LAQRRDVRRQQLEGQIMQRNQMRMQQAPMMGPGYMQPQMYYGPGPGGYPPQAGRGVMGYP 570
Query: 281 HGGMIPNGFSSPPPSPLF 298
GM+P PP P+
Sbjct: 571 QPGMMPPRGRYPPGQPML 588
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 99/194 (51%), Gaps = 24/194 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG++ S KV + GKS+GYG+V Y T ESA AI+ +
Sbjct: 244 FIKNLDEAIDNKALHDTFAAFGNVLSCKVATDETGKSRGYGYVHYETAESAEAAIKAVNR 303
Query: 117 ATVEGMELY-----APSLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ + R +I E+ A F N+YVKNLD D+
Sbjct: 304 MLLNDKQVFVGHHISRKERQSQIDEARAQFTNIYVKNLDT------------------DI 345
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E E + F + G I+S + N G S+GFGFV + N +EA RA+N ++ K L+
Sbjct: 346 TEAEFRVMFEEFGNITSAVLQTDNEGKSRGFGFVNYENHEEAERAVNEMHEKEIKGKVLF 405
Query: 231 VAIAQTKRERTSYL 244
V AQ K ER S L
Sbjct: 406 VGRAQKKSERQSEL 419
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 144 YVKNLDDDVTEEILDK----NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK 199
Y+ D + + L K N+++KN+++ +D L F+ G + S K+ G S+
Sbjct: 222 YLNAADGERRDPALRKTGQGNIFIKNLDEAIDNKALHDTFAAFGNVLSCKVATDETGKSR 281
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G+G+V + + A AI +N +L + K ++V +++ER S +
Sbjct: 282 GYGYVHYETAESAEAAIKAVNRMLLNDKQVFVGHHISRKERQSQI 326
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 4/219 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
F N +D+ L ++F ++G I S KV+ G++KG+GFV + A NA + L
Sbjct: 194 FVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLN 253
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G LY + +I+ A N + + + + NLYVKN++D +D+ L
Sbjct: 254 MKDINGRILYVGRAQK-KIERQAELRNRF-ELMKAERANRYQGVNLYVKNLDDSLDDERL 311
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 RKEFMPFGTITSAKVM-SEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 370
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVY 274
K +R ++L + ++ GL +YQ + Y
Sbjct: 371 RKEDRKAHLASQFMQRMSGLRLPGQAQMGQMYQSNVSAY 409
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 107/190 (56%), Gaps = 14/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FGDI S KVV ++G SKGYGFV ++T+E+A +IEK+
Sbjct: 102 FIKNLDKSIDNKAMYDTFSAFGDILSCKVVCDENG-SKGYGFVHFATEEAANKSIEKVNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y + + + D ++ N++VKN D++D+ L+
Sbjct: 161 MLLNGKKVYVGKFMSRK------------ERYDAMGGQQKKFTNVFVKNFGDELDDEGLR 208
Query: 177 QYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F + G I S K+M+ + G +KGFGFVCF +P +A A + LN + + LYV AQ
Sbjct: 209 EMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYVGRAQ 268
Query: 236 TKRERTSYLR 245
K ER + LR
Sbjct: 269 KKIERQAELR 278
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 20/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + L + FS G I S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDSMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L + N+++KN++ +D +
Sbjct: 74 FDVIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKSIDNKAM 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G SKG+GFV F+ + AN++I +NG+L + K +YV
Sbjct: 116 YDTFSAFGDILSCKVVCDENG-SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFM 174
Query: 236 TKRER 240
+++ER
Sbjct: 175 SRKER 179
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++++DV E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+++N + +P +RIM++++ P L
Sbjct: 70 DSMNFDVIKGRP---------------IRIMWSQRDPSL 93
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 120/227 (52%), Gaps = 29/227 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N++ + L +IF +FG I S V+ DGKSK +GFV + + A ++E L
Sbjct: 351 FVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNG 410
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y G+ Q+ + + +K+ + +E +DK NLY+KN++D + +
Sbjct: 411 QKFDDKEWYV-----GKAQKKSE-REIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGD 464
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F+Q G I+S K+MR G+S+G GFV FS+P+EA+RA+ +N + KPLYVA
Sbjct: 465 DKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVA 524
Query: 233 IAQTKRERTSYLRI-------------------MYAKQGPGLASTNF 260
+AQ K +R + L+ MY GPGL F
Sbjct: 525 LAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPPSGPGLGQQMF 571
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV G SKG+GFVQ+ ++E+A AI+KL
Sbjct: 260 FIKNLDKGIDHKALHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNG 319
Query: 117 ATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +++ + +ES FNN++VKN+ + +TEE
Sbjct: 320 MLLNDKQVFVGPFVRKQERESTINKEKFNNVFVKNISEGMTEE----------------- 362
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + F + G I+SV +MR G SK FGFV F N D+A ++ LNG F K YV
Sbjct: 363 -DLTRIFGEFGPITSVVVMRDGDGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVG 421
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 422 KAQKKSEREIELK 434
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 21/190 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +LH +FS+ + S +V S +S GYG+V Y+ E A A++ L
Sbjct: 172 YVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDVLN 231
Query: 116 AATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G + S R I++S + N+++KN++ +D
Sbjct: 232 FTPLNGKPIRIMYSHRDPSIRKSGT-------------------GNIFIKNLDKGIDHKA 272
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S K+ G+SKG GFV F + + A +AI+ LNG+L + K ++V
Sbjct: 273 LHDTFSAFGNILSCKVATDASGMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPF 332
Query: 235 QTKRERTSYL 244
K+ER S +
Sbjct: 333 VRKQERESTI 342
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 54/236 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQES--------- 106
+ +L +++ +L+ +FS+ G + S +V +S GYG+V YS +
Sbjct: 33 YVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDEKEKETIYE 92
Query: 107 ------------------ALNAIEKLYAATVEGMELYAPSLR----AGRIQESASFNNLY 144
+ I K G EL L G + E L
Sbjct: 93 GFCVFCLIPSNYAIFFVLGFSYIHKKRRGKERGGELQKRELNFLRVGGEMAEVQDHEGLL 152
Query: 145 VKNLDDDVT--EEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISK 199
D+ +LYV +++ +V + +L FSQ + S+++ R T+R +
Sbjct: 153 SGTNDEPNIGPSRFASASLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSL-- 210
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+G+V +++ ++A RA++ LN + KP +RIMY+ + P +
Sbjct: 211 GYGYVNYTDLEDAARALDVLNFTPLNGKP---------------IRIMYSHRDPSI 251
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNP-D 210
+ + +LYV ++ +V++ +L FSQ G + SV++ R T R + G+G+V +SNP D
Sbjct: 26 QFVTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSL--GYGYVNYSNPQD 83
Query: 211 EANR 214
E +
Sbjct: 84 EKEK 87
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 114/236 (48%), Gaps = 52/236 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+A+ + + + +F+ FGD+ SS + Q+GKS+G+GFV ++T E+A A+E L
Sbjct: 218 YVKNIANEVTDDEFRDLFAAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVEDLNN 277
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN++D+VD+
Sbjct: 278 KDFRGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDEVDDE 332
Query: 174 ELKQYFSQCGIISSVKIMRTN--------------------------------------- 194
+L+ F+ G I+S K+MR
Sbjct: 333 KLRTLFADFGPITSAKVMRDTPTDSKEDEEGSSEEKEKENKPEAEEKTEEKEGSEKKEKK 392
Query: 195 -----RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G SKGFGFVCFSNPD+A +A+ +N + H KPLYVA+AQ K R S L
Sbjct: 393 SDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQRMVHGKPLYVALAQRKDVRKSQLE 448
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+ +
Sbjct: 125 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNG 184
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + +E A+F N+YVKN+ ++VT++
Sbjct: 185 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIANEVTDD--------------- 229
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + F+ G ++S + R G S+GFGFV F+ + A +A+ LN F + LY
Sbjct: 230 ---EFRDLFAAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVEDLNNKDFRGQDLY 286
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 287 VGRAQKKHEREEELRKSY 304
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L F+ G I S K+ + G SKG+GFV + + A +AI +
Sbjct: 123 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHV 182
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
NG+L ++K +YV K++R S M A
Sbjct: 183 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKA 212
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 140/293 (47%), Gaps = 44/293 (15%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129
++FS FG I S + QDGKSKG+GFV + ESA+ A+E+L + G ++Y
Sbjct: 249 FEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVG-- 306
Query: 130 RAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIELKQYFSQCGII 185
RA + +E +K + V E L K NL+VKN++D +D +L++ F G I
Sbjct: 307 RAQKKRERLE----ELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTI 362
Query: 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL- 244
+S K+M G SKGFGFVCF+ P+EA +AI +N + + KPLYVA+AQ K R S L
Sbjct: 363 TSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLE 422
Query: 245 ---------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPP-- 293
R+ A G GL P P Y + G PNG + P
Sbjct: 423 QQIQARNQMRMQNAAAG-GLPGQFIP--PMFYG-----------QQGFFPPNGRGNAPYP 468
Query: 294 -PSPLFLTRA-GQAAANNLTNGNQRAAANNSMLAVAS--PDERKDILGQGLYP 342
P+P + R GQ R N + V P ++D GQ + P
Sbjct: 469 GPNPQMMMRGRGQPFPEQWP----RPGPNGQPVPVYGIPPQFQQDFNGQNMRP 517
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
R C + + D + + I F NL IDN LH FS FG I S KV + G+S
Sbjct: 121 RPCRIMWSQRDPSARRSGDGNI-FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQS 179
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQES------ASFNNLYVKN 147
K +GFV Y T E+A AIE + + E++ + + +ES A+F N+YVKN
Sbjct: 180 KCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKN 239
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
+D + +EE +K FS G I+S+ + + G SKGFGFV F
Sbjct: 240 IDLNYSEESFEK------------------LFSPFGKITSIYLEKDQDGKSKGFGFVNFE 281
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+ + A +A+ LN + + +YV AQ KRER L+ Y
Sbjct: 282 DHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 322
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV---VSQDGKSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 55 YVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKYEDGEKAIEE 112
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L +EG R RI S D D N+++KN++ +D
Sbjct: 113 LNYNPIEG--------RPCRIMWSQR----------DPSARRSGDGNIFIKNLHPAIDNK 154
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ G SK FGFV + + A AI +NG+L + + ++V
Sbjct: 155 ALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 214
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 215 HISKKDRESKFEEMKA 230
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID+ KL + F FG I S+KV+V + GKSKG+GFV ++T E A AI ++
Sbjct: 339 FVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNT 398
Query: 117 ATVEGMELY 125
+ G LY
Sbjct: 399 RMINGKPLY 407
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 48/232 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + + ++F+KFG++ SS + Q+GK++G+GFV ++T E+A A+++L
Sbjct: 244 YVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVDELNG 303
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN+ DDVD+
Sbjct: 304 KDFRGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDD 358
Query: 174 ELKQYFSQCGIISSVKIMRTN--------------------------------------- 194
+L+ FS+ G I+S K+MR +
Sbjct: 359 KLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGEAEEEQKEGSEKKTEKKGDR 418
Query: 195 -RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G SKGFGFVCFSNPD+A +A+ +N + KPLYVA+AQ K R S L
Sbjct: 419 KLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLE 470
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 151 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKH--- 207
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN---LYVKNINDDVDEI 173
V GM L E + ++ D E + N +YVKNIN++V +
Sbjct: 208 --VNGMLL----------NEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDE 255
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F++ G ++S + R G ++GFGFV F+ + A +A++ LNG F + LYV
Sbjct: 256 EFRELFAKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGR 315
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 316 AQKKHEREEELRKSY 330
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+T A+E+
Sbjct: 63 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 121 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGAGNIFIKNLDAAIDNK 162
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 163 ALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 222
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 223 HIPKKDRQSKFEEMKA 238
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 167/363 (46%), Gaps = 79/363 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + L FS FG I S+ V+ +G S+ +GFV + E A NA++ L
Sbjct: 243 YVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNG 302
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ M LY RA + E + ++ + E++ NLY+KN++DD+++ L+
Sbjct: 303 KSIGDMVLYVA--RAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 360
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G ++S K+M + G SKG GFV F+ ++AN AI +NG + +KPLYVA+AQ
Sbjct: 361 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 420
Query: 237 KRERTSYLRIMYAK----------QGPGLASTNF------------------PVHPTLYQ 268
K ER ++L +A+ GP +A F P
Sbjct: 421 KEERKAFLAAHFARVRALATMAPTLGPNIAPHQFNFGHGVPALFPPPPPAGFGFQPNFVP 480
Query: 269 RALQVY---QAPGFR----HGGM---------------------IP---NGFSSP----- 292
+ Y + PG R HGGM +P NG ++P
Sbjct: 481 NMMMPYNMQRQPGQRSGPPHGGMPRHLHNPHQMFHQNANQGFRHMPNRRNGVANPAMLHQ 540
Query: 293 ------PPSPLFLTRAGQAAANNLTNGNQRAAANN--SMLAVASPDERKDILGQGLYPLV 344
P P+ QA + + G +A +NN + LA A+P+++++ILG L+PLV
Sbjct: 541 HHRFSSPMQPM-----QQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLV 595
Query: 345 KKL 347
++L
Sbjct: 596 EQL 598
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 16/193 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+++FS FG I SSKV +GKSKGYGF+Q+ ++ SA +AI L
Sbjct: 152 FIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNG 211
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
G +++ L+++ + + T + + N+YVKN+ + +L
Sbjct: 212 MLANGQKIFV---------------GLFIRRQEREHTGDANNFTNVYVKNLPKHFSDNDL 256
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I+S +MR G+S+ FGFV F + A A+ LNG LYVA AQ
Sbjct: 257 LNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQ 316
Query: 236 TKRERTSYLRIMY 248
K ER + L+ +
Sbjct: 317 KKSERQAELKAKF 329
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 20/186 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV--VSQDGKSKGYGFVQYSTQESALNAIEKL 114
+ +L +++ +L +FS+ + S+ V ++ KS GYG+V + ++E A A+E L
Sbjct: 63 YVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMENL 122
Query: 115 YAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
V G + + N D + + L N+++KN+ ++D
Sbjct: 123 NFTVVNGKPI-----------------RVMFSNRDPTLRKSGL-ANVFIKNLEPNIDNKS 164
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + FS G I S K+ G SKG+GF+ F + A AIN LNG+L + + ++V +
Sbjct: 165 LYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF 224
Query: 235 QTKRER 240
++ER
Sbjct: 225 IRRQER 230
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK--GFGFVCFSNPDEANRAINT 218
LYV ++ V E +L FSQ ++S + R G K G+G+V F + ++A RA+
Sbjct: 62 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMEN 121
Query: 219 LNGILFHQKPLYVAIA 234
LN + + KP+ V +
Sbjct: 122 LNFTVVNGKPIRVMFS 137
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 167/363 (46%), Gaps = 79/363 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + L FS FG I S+ V+ +G S+ +GFV + E A NA++ L
Sbjct: 244 YVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNG 303
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ M LY RA + E + ++ + E++ NLY+KN++DD+++ L+
Sbjct: 304 KSIGDMVLYVA--RAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 361
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G ++S K+M + G SKG GFV F+ ++AN AI +NG + +KPLYVA+AQ
Sbjct: 362 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 421
Query: 237 KRERTSYLRIMYAK----------QGPGLASTNF------------------PVHPTLYQ 268
K ER ++L +A+ GP +A F P
Sbjct: 422 KEERKAFLAAHFARVRALATMAPTLGPNIAPHQFNFGHGVPALFPPPPPAGFGFQPNFVP 481
Query: 269 RALQVY---QAPGFR----HGGM---------------------IP---NGFSSP----- 292
+ Y + PG R HGGM +P NG ++P
Sbjct: 482 NMMMPYNMQRQPGQRSGPPHGGMPRHLHNPHQMFHQNANQGFRHMPNRRNGVANPAMLHQ 541
Query: 293 ------PPSPLFLTRAGQAAANNLTNGNQRAAANN--SMLAVASPDERKDILGQGLYPLV 344
P P+ QA + + G +A +NN + LA A+P+++++ILG L+PLV
Sbjct: 542 HHRFSSPMQPM-----QQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLV 596
Query: 345 KKL 347
++L
Sbjct: 597 EQL 599
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 16/193 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+++FS FG I SSKV +GKSKGYGF+Q+ ++ SA +AI L
Sbjct: 153 FIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNG 212
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
G +++ L+++ + + T + + N+YVKN+ + +L
Sbjct: 213 MLANGQKIFV---------------GLFIRRQEREHTGDANNFTNVYVKNLPKHFSDNDL 257
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I+S +MR G+S+ FGFV F + A A+ LNG LYVA AQ
Sbjct: 258 LNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQ 317
Query: 236 TKRERTSYLRIMY 248
K ER + L+ +
Sbjct: 318 KKSERQAELKAKF 330
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 20/186 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV--VSQDGKSKGYGFVQYSTQESALNAIEKL 114
+ +L +++ +L +FS+ + S+ V ++ KS GYG+V + ++E A A+E L
Sbjct: 64 YVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAMENL 123
Query: 115 YAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
V G + + N D + + L N+++KN+ ++D
Sbjct: 124 NFTVVNGKPI-----------------RVMFSNRDPTLRKSGL-ANVFIKNLEPNIDNKS 165
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + FS G I S K+ G SKG+GF+ F + A AIN LNG+L + + ++V +
Sbjct: 166 LYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF 225
Query: 235 QTKRER 240
++ER
Sbjct: 226 IRRQER 231
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK--GFGFVCFSNPDEANRAINT 218
LYV ++ V E +L FSQ ++S + R G SK G+G+V F + ++A RA+
Sbjct: 63 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGSKSLGYGYVNFMSREDATRAMEN 122
Query: 219 LNGILFHQKPLYVAIA 234
LN + + KP+ V +
Sbjct: 123 LNFTVVNGKPIRVMFS 138
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 106/191 (55%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + ++FS +G I S+ + +GK +G+GFV + +AL A E+L
Sbjct: 224 YVKNIDSETTQEEFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEELND 283
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+G +LY GR Q+ K + E++ NL+VKN++D VD+
Sbjct: 284 TDFKGQKLYV-----GRAQKKYERLQELKKQYESSRMEKLAKYQGVNLFVKNLDDSVDDQ 338
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+SVK+MR G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 339 KLEEEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 398
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 399 AQRKEVRRSQL 409
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 102/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG+I S K+ + GKS+ +GFV + +E+A AI+ +
Sbjct: 131 FIKNLHPAIDNKALHDTFSVFGNILSCKIATDETGKSRKFGFVHFEEEEAAKEAIDAING 190
Query: 117 ATVEGMELY-APSL----RAGRIQESAS-FNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G+E+Y AP + R ++ E S F N+YVKN+D + T+E
Sbjct: 191 MLLNGLEVYVAPHVSKKDRQSKLDEVKSNFTNVYVKNIDSETTQE--------------- 235
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E ++ FS G I+S + R N G +GFGFV F + + A +A LN F + LY
Sbjct: 236 ---EFEKMFSNYGAITSAVLERDNEGKLRGFGFVNFEDHNAALKACEELNDTDFKGQKLY 292
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER L+ Y
Sbjct: 293 VGRAQKKYERLQELKKQY 310
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ L ++ L+ +FS G + S +V K S GY +V + + AIEKL
Sbjct: 43 YVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIEKLN 102
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L K N+++KN++ +D L
Sbjct: 103 YTPIKG--------RPCRIMWSQRDPSLRKKG----------SGNVFIKNLHPAIDNKAL 144
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S KI G S+ FGFV F + A AI+ +NG+L + +YVA
Sbjct: 145 HDTFSVFGNILSCKIATDETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVYVAPHV 204
Query: 236 TKRERTSYL 244
+K++R S L
Sbjct: 205 SKKDRQSKL 213
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++D+ KL + F+ FG I S KV+ + G SKG+GFV +ST E A AI +
Sbjct: 327 FVKNLDDSVDDQKLEEEFAPFGTITSVKVMRDEAGNSKGFGFVCFSTPEEATKAITEKNQ 386
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKN 147
V G LY + ++ S + +N
Sbjct: 387 QIVAGKPLYVAIAQRKEVRRSQLAQQIQARN 417
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 133/290 (45%), Gaps = 60/290 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N++ + + +F+K+GD+ SS + +GKS+G+GFV ++T E A A+E+L
Sbjct: 249 YVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNG 308
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN+ DD+D+
Sbjct: 309 KEFRGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 174 ELKQYFSQCGIISSVKIMR-----------------TNR--------------------- 195
+L+Q FS+ G I+S K+MR N+
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 196 -------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR--I 246
G SKGFGFVCFSNPD+A +A+ +N + KPLYVA+AQ K R + L I
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASI 483
Query: 247 MYAKQGPGLASTNFPVHPTLYQRALQ--VYQAPGFRHGGMIPNGFSSPPP 294
Q L L Q+ +Q VY APG + M P G P P
Sbjct: 484 QARNQ---LRMQQAAAQAGLPQQYMQTPVYYAPGQQPNFMPPGGRGMPFP 530
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 101/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+ +
Sbjct: 156 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNN 215
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + +E A+F N+YVKN+ + T+E
Sbjct: 216 MLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDE--------------- 260
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + F++ G ++S + R + G S+GFGFV F+ + A +A+ LNG F + LY
Sbjct: 261 ---EFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLY 317
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 318 VGRAQKKHEREEELRKSY 335
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ L ++ L ++FS+ G + S +V +S GY +V Y++ A+E+L
Sbjct: 68 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELN 127
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S D + N+++KN++ +D L
Sbjct: 128 YTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNKAL 169
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F+ G I S K+ + G SKG+GFV + + A +AI +N +L ++K +YV
Sbjct: 170 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHI 229
Query: 236 TKRERTSYLRIMYA 249
K++R S M A
Sbjct: 230 PKKDRQSKFEEMKA 243
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V +++ + +A+
Sbjct: 66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSL--GYAYVNYNSTSDGEKAL 123
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 124 EELNYTLIKGRP---------------CRIMWSQRDPALRKT 150
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 115/242 (47%), Gaps = 59/242 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL I + Q+F KFG+I S+ + Q+GKS+G+GFV YST +SA A++++
Sbjct: 232 YIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMND 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
V+G +LY GR Q+ K + E+ NLYVKN+ DD+D+
Sbjct: 292 KEVKGQKLYV-----GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 346
Query: 174 ELKQYFSQCGIISSVKIMRTNR-------------------------------------- 195
+L++ F+ G I+S K+MR
Sbjct: 347 KLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDD 406
Query: 196 -------------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S
Sbjct: 407 QDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRS 466
Query: 243 YL 244
L
Sbjct: 467 QL 468
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 101/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 139 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNG 198
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ + R + +E A+F N+Y+KNLD +++
Sbjct: 199 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEIS----------------- 241
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E E +Q F + G I+S + R G S+GFGFV +S D A A++ +N + LY
Sbjct: 242 -EEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLY 300
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 301 VGRAQKKHEREEELRKQY 318
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 51 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 109 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDAAIDNK 150
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 151 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 210
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 211 HISKKDRQSKFEEMKA 226
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 38/120 (31%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV LD VTE +L EL FS G ++S+++ R T R +
Sbjct: 49 SLYVGELDPSVTEAML---------------YEL---FSSIGQVASIRVCRDAVTRRSL- 89
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
G+ +V ++N + RA+ LN L KP RIM++++ P L T
Sbjct: 90 -GYAYVNYNNTADGERALEDLNYTLIKGKP---------------CRIMWSQRDPALRKT 133
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 136/256 (53%), Gaps = 19/256 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL T + L ++F +FG+I S+ V+ +GKS+ +GFV + E+A+ AIEK+
Sbjct: 122 YVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNG 181
Query: 117 ATVEGMELYAPSLRAGRIQESAS-FNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
V+ EL+ GR Q + +L K + + ++ + NLYVKN++D VD
Sbjct: 182 VVVDEKELHV-----GRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS+ G I+S K+M + GISKG GFV FS +EA++A+ +NG + KP+YV+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 233 IAQTKRERTSYLRIMY------AKQGPGLASTNFPVHPTLYQRALQVYQ-APGFRHGGMI 285
+AQ K + +L+ + Q P + P Q L+ Y P G +
Sbjct: 297 LAQCKEQHKLHLQTQFNNPPPSPHQQPIFSQVVAPATMLSQQTPLRGYNFQPYSMCGSRM 356
Query: 286 PNGFSSPPPS-PLFLT 300
PN S PP S P F+
Sbjct: 357 PN--SCPPISIPNFMV 370
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN +L +FS FG + S KV G SKGYGFVQ+ + S A
Sbjct: 34 FVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNG 93
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ ++ P + G+ +S F N+YVKNL + T+ +L
Sbjct: 94 TLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDA------------------DL 135
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F + G I+S +M+ G S+ FGFV F + A AI +NG++ +K L+V AQ
Sbjct: 136 KRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
Query: 236 TKRERTSYLRIMY 248
K RT L+ +
Sbjct: 196 RKTNRTEDLKAKF 208
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN+++ +D +L FS G + S K+ R G+SKG+GFV F + A N
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 220 NGILFHQKPLYVA--IAQTKRERTSYLRIMYAK 250
NG L + ++V +++ + +++ +Y K
Sbjct: 92 NGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVK 124
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 109/184 (59%), Gaps = 11/184 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 193 YIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEAAQKAVEEMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G L+ GR Q+ A +K + + +E + LY+KN++D +D+
Sbjct: 253 KDINGQLLFV-----GRAQKKAE-RQAELKQMFEQQKQERFRRCQGVKLYIKNLDDTIDD 306
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G IS VK+M+ G SKGFG +CFS+P+EA RA+ +NG + KPL +A
Sbjct: 307 EKLRREFSSFGSISRVKVMK-EEGRSKGFGLICFSSPEEATRAMTEMNGRILGSKPLNIA 365
Query: 233 IAQT 236
+AQ+
Sbjct: 366 LAQS 369
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 112/195 (57%), Gaps = 13/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D S+GY FV + Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSRGYAFVHFQNQMAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A ++ L+ + + +E+ ++N ++ T N+Y+KN DD+D+ L+
Sbjct: 160 ALLKDCRLFVGRFKNRQDREAE------LQNKANEFT------NIYIKNFGDDMDDKRLE 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + L+V AQ
Sbjct: 208 EVFSKYGKTVSVKVMTDSTGKSKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQK 267
Query: 237 KRERTSYLRIMYAKQ 251
K ER + L+ M+ +Q
Sbjct: 268 KAERQAELKQMFEQQ 282
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G S+G+ FV F N A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQMAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L L+V + +++R + L+
Sbjct: 158 NGALLKDCRLFVGRFKNRQDREAELQ 183
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 167/363 (46%), Gaps = 79/363 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + L FS FG I S+ V+ +G S+ +GFV + E A NA++ L
Sbjct: 267 YVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNG 326
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ M LY RA + E + ++ + E++ NLY+KN++DD+++ L+
Sbjct: 327 KSIGDMVLYVA--RAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 384
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G ++S K+M + G SKG GFV F+ ++AN AI +NG + +KPLYVA+AQ
Sbjct: 385 KLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQR 444
Query: 237 KRERTSYLRIMYAK----------QGPGLASTNF------------------PVHPTLYQ 268
K ER ++L +A+ GP +A F P
Sbjct: 445 KEERKAFLAAHFARVRALATMAPTLGPNIAPHQFNFGHGVPALFPPPPPAGFGFQPNFVP 504
Query: 269 RALQVY---QAPGFR----HGGM---------------------IP---NGFSSP----- 292
+ Y + PG R HGGM +P NG ++P
Sbjct: 505 NMMMPYNMQRQPGQRSGPPHGGMPRHLHNPHQMFHQNANQGFRHMPNRRNGVANPAMLHQ 564
Query: 293 ------PPSPLFLTRAGQAAANNLTNGNQRAAANN--SMLAVASPDERKDILGQGLYPLV 344
P P+ QA + + G +A +NN + LA A+P+++++ILG L+PLV
Sbjct: 565 HHRFSSPMQPM-----QQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLV 619
Query: 345 KKL 347
++L
Sbjct: 620 EQL 622
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 16/193 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+++FS FG I SSKV +GKSKGYGF+Q+ ++ SA +AI L
Sbjct: 176 FIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNG 235
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
G +++ L+++ + + T + + N+YVKN+ + +L
Sbjct: 236 MLANGQKIFV---------------GLFIRRQEREHTGDANNFTNVYVKNLPKHFSDNDL 280
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I+S +MR G+S+ FGFV F + A A+ LNG LYVA AQ
Sbjct: 281 LNEFSSFGAITSAIVMRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQ 340
Query: 236 TKRERTSYLRIMY 248
K ER + L+ +
Sbjct: 341 KKSERQAELKAKF 353
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 20/186 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV--VSQDGKSKGYGFVQYSTQESALNAIEKL 114
+ +L +++ +L +FS+ + S+ V ++ KS GYG+V + ++E A A+E L
Sbjct: 87 YVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMENL 146
Query: 115 YAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
V G + + N D + + L N+++KN+ ++D
Sbjct: 147 NFTVVNGKPI-----------------RVMFSNRDPTLRKSGL-ANVFIKNLEPNIDNKS 188
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + FS G I S K+ G SKG+GF+ F + A AIN LNG+L + + ++V +
Sbjct: 189 LYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLF 248
Query: 235 QTKRER 240
++ER
Sbjct: 249 IRRQER 254
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK--GFGFVCFSNPDEANRAINT 218
LYV ++ V E +L FSQ ++S + R G K G+G+V F + ++A RA+
Sbjct: 86 LYVGDLEASVGEDQLVALFSQVAPVASAYVCRDIAGGRKSLGYGYVNFMSREDATRAMEN 145
Query: 219 LNGILFHQKPLYVAIA 234
LN + + KP+ V +
Sbjct: 146 LNFTVVNGKPIRVMFS 161
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 115/209 (55%), Gaps = 9/209 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + KL ++FS FG S +V+ + G+S+G+GFV ++ A A++++
Sbjct: 192 YIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFVNFAHHGDAQKAVDEMNG 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLD---DDVTEEILDKNLYVKNINDDVDEI 173
+ G +Y GR Q+ + + D + NLYVKN++D +D+
Sbjct: 252 TELNGKVIYV-----GRAQKRLERQGELKRKFELIKQDRIQRYQGVNLYVKNLDDGIDDE 306
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ F+ G I+S K+M T+ S+GFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 307 RLRKEFAPYGTITSAKVM-TDGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 365
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPV 262
AQ + ER + L Y ++ L + + PV
Sbjct: 366 AQRREERKAILTNKYMQRLATLRTMSSPV 394
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 14/161 (8%)
Query: 86 VVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYV 145
VV + SKGYGFV + T+E+A AIE T+ GM L + G +
Sbjct: 128 VVCDERGSKGYGFVHFETEEAANRAIE-----TMNGMLLNDRKVFVGNFKSR-------- 174
Query: 146 KNLDDDVTEEILD-KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFV 204
K ++++ + L N+Y+KN +D + +LK+ FS G SV++M+ RG S+GFGFV
Sbjct: 175 KEREEELGSKALKFTNVYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKDERGRSRGFGFV 234
Query: 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
F++ +A +A++ +NG + K +YV AQ + ER L+
Sbjct: 235 NFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELK 275
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 156/349 (44%), Gaps = 71/349 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + L Q F+ FG+I S+ V+ DG SK +GFV + E A+ A+EK
Sbjct: 212 YIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANG 271
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ LY RA + +E A + + D+ V DK NLY+KNI+D ++
Sbjct: 272 KAIGDKTLYV--GRAQKKEERKAELKTRFGRGRDNKV-----DKPNGINLYLKNIDDGIN 324
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ LK+ F + G ++S K+M RG SKG GFV F+ + RAIN +NG + +KPLYV
Sbjct: 325 DEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYV 384
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTN---------------------------FPVH- 263
+AQ K ER + L +A++ +A++ FP H
Sbjct: 385 GLAQPKEERKAMLMAHFAQRNLAMAASQYAGPQQVYFGHPSSPGPIAPPQGAVFGFPQHF 444
Query: 264 -------------PTLYQRALQVYQAPGFRHGGMI-------PNGFSSPPPS--PLFLTR 301
P QR AP + MI PN P P+ P
Sbjct: 445 VPGMGPISPVMMPPHNMQRPRYPGPAPYRQQQAMIHANANHMPNARPGPYPAMPPQAFPG 504
Query: 302 AGQAAANNLTNGNQRAAANNSMLAVAS--PDERKDILGQGLYPLVKKLK 348
AG A Q+ A + + AVAS P ++ ILG LY LV++L+
Sbjct: 505 AGATAW-------QQHAVSRTTTAVASAGPADQHQILGNKLYALVEQLE 546
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 98/194 (50%), Gaps = 19/194 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ L++IFS FG I S KV G+SKGYGFVQY T+ESA AI L
Sbjct: 126 FVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNG 185
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ F L+++ D E+ N+Y+KN+ + E +L+
Sbjct: 186 MLANNRKM---------------FVGLHMRRRD----REVKFTNVYIKNLPTEFSEDDLR 226
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
Q F+ G I+S +MR G SK FGFV F P+ A A+ NG K LYV AQ
Sbjct: 227 QEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQK 286
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 287 KEERKAELKTRFGR 300
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 108/234 (46%), Gaps = 42/234 (17%)
Query: 37 SALIASIDVHSAMATPT-FIP--------FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV 87
SA IA+ V A TP +P + +LA T+D +LH +FS+ + + +V
Sbjct: 9 SAPIAAEVVPVAEGTPAAVLPPLGSMASLYVGDLAETVDEPQLHALFSQVAPVATVRVCR 68
Query: 88 S-QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA------PSLR-AGRIQESAS 139
G S GYG+V + +++ A A+E L + G + PSLR +GR
Sbjct: 69 DILSGVSLGYGYVNFYSRQEATRALEALNFTPLIGKYIRVMFSNRDPSLRKSGRA----- 123
Query: 140 FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK 199
NL+VKN+ ++D L + FS G I S K+ + G SK
Sbjct: 124 --------------------NLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSK 163
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGP 253
G+GFV + + A AIN LNG+L + + ++V + +R+R +Y K P
Sbjct: 164 GYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNLP 217
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 16/97 (16%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINT 218
+LYV ++ + VDE +L FSQ +++V++ R G+S G+G+V F + EA RA+
Sbjct: 36 SLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEA 95
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
LN PL Y+R+M++ + P L
Sbjct: 96 LNFT-----PLI----------GKYIRVMFSNRDPSL 117
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 128/239 (53%), Gaps = 21/239 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + I + +L ++ ++ G+I S+ V+ G SKG+GF+ + ESA +E L
Sbjct: 206 FVKNLPADIGDDELGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNE 265
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL---DKNLYVKNINDD-VDE 172
+ G LYA GR Q+ + + ++ E L NLYVKN++D+ VD+
Sbjct: 266 REMSGKTLYA-----GRAQKKTEREAMLRQKAEESKQERYLKYQSMNLYVKNLSDEEVDD 320
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR-AINTLNGILFHQKPLYV 231
L++ F+ G I+S K+M+ G SKGFGFVCF++ DEA R + +NG + KPLYV
Sbjct: 321 DALRELFANSGTITSCKVMKDGSGKSKGFGFVCFTSHDEATRPPVTEMNGKMVKGKPLYV 380
Query: 232 AIAQTK--RERTSYLRIMYAKQGPGLASTNFPVHP----TLYQRALQVYQAPGFRHGGM 284
A+AQ K R T M A+ G G S P +P + Y A+ + APG GGM
Sbjct: 381 ALAQRKDVRRATQLEANMQARMGMGAMSR--PPNPMAGMSPYPGAMPFF-APG--PGGM 434
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 97/191 (50%), Gaps = 20/191 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID LH FS FG I S KV +G SKGYGFV + Q +A AI+ +
Sbjct: 117 FIKNLDKTIDAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQ 176
Query: 117 ATVEGMELY-AP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+EG +Y AP RA R + + N++VKNL D I DD E
Sbjct: 177 KKIEGKIVYVAPFQKRADRPRARTLYTNVFVKNLPAD--------------IGDD----E 218
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + ++ G I+S +M+ ++G SKGFGF+ F + + A + + LN K LY A
Sbjct: 219 LGKMATEHGEITSAVVMKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRA 278
Query: 235 QTKRERTSYLR 245
Q K ER + LR
Sbjct: 279 QKKTEREAMLR 289
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 30/200 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQ---ESALNA 110
+ +L + +L ++FS G + S + V +D +S GY +V Y++ ++A A
Sbjct: 26 YVGDLEKDVTEAQLFELFSSVGPVAS--IRVCRDAVTRRSLGYAYVNYNSALDPQAADRA 83
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+E L V G + RI S D + N+++KN++ +
Sbjct: 84 METLNYHVVNGKPM--------RIMWSHR----------DPSARKSGVGNIFIKNLDKTI 125
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D L FS G I S K+ G+SKG+GFV F + A+RAI T+N K +Y
Sbjct: 126 DAKALHDTFSAFGKILSCKVATDANGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVY 185
Query: 231 VAIAQTK----RERTSYLRI 246
VA Q + R RT Y +
Sbjct: 186 VAPFQKRADRPRARTLYTNV 205
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFS---NP 209
+ + +LYV ++ DV E +L + FS G ++S+++ R T R + G+ +V ++ +P
Sbjct: 20 LANSSLYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSL--GYAYVNYNSALDP 77
Query: 210 DEANRAINTLNGILFHQKPLYV 231
A+RA+ TLN + + KP+ +
Sbjct: 78 QAADRAMETLNYHVVNGKPMRI 99
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 152/332 (45%), Gaps = 52/332 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N + +L ++F +G I S + V +G +KG+GFV ++ + A+ A+E L
Sbjct: 236 FVKNFDTESTEDELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALND 295
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+G LY GR Q+ + K + D E++ NL++KN+++ +D+
Sbjct: 296 KEYKGKPLYV-----GRAQKKNERVHELTKKYEADRLEKLQKYQSVNLFIKNLDESIDDA 350
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L++ F G I+S K+M G S+GFGFVC S P+EA +AI+ +N + KPLYVA+
Sbjct: 351 RLEEEFKPFGTITSAKVMLDENGKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLYVAL 410
Query: 234 AQTKRERTSYL---------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFR---H 281
AQ K R S L M + GPG+ N V P Y + + PG R
Sbjct: 411 AQPKAIRRSQLAQQIQARNQMRMQQQAGPGIP--NQFVQPIFYGQQPGML-PPGARVPPM 467
Query: 282 GGMIPNGFSSPPPSPLFLTRAGQAAANN---------LTNGN---QRA------------ 317
G IP P P P + + A N + NGN QR
Sbjct: 468 GNQIPQFAGMPRPGPFPQGQFPRMAPNGQPMPVYGQPVFNGNGPQQRGYYPNNRQNKNRN 527
Query: 318 --AANNSMLAVASP---DERKDILGQGLYPLV 344
NS+ A+ +++K +LG+ LYP V
Sbjct: 528 QKEEGNSLAAILPQLPLEQQKRVLGEELYPKV 559
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 102/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL I+N LH FS FG + S KV ++G SKG+GFV Y + E+A AIE +
Sbjct: 143 FIKNLDPAIENKTLHDTFSSFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENING 202
Query: 117 ATVEGMELY-APSL----RAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G E+Y P L R R QE ++ N++VKN D + TE+
Sbjct: 203 MLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVFVKNFDTESTED--------------- 247
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
EL++ F G I+S+ + + G +KGFGFV F+ D+A +A+ LN + KPLY
Sbjct: 248 ---ELRELFESYGPITSIHLQVDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLY 304
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER L Y
Sbjct: 305 VGRAQKKNERVHELTKKY 322
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 26/206 (12%)
Query: 47 SAMATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYS 102
S A+ T V L T+ L++ FS G + S + V +D +K GYG+V +
Sbjct: 44 STQASETLASLYVGELDPTVTESDLYEFFSPIGSVNS--IRVCRDAVTKRSLGYGYVNFH 101
Query: 103 TQESALNAIEKLYAATVEGMEL-YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNL 161
+Q + A+E+L A ++G+ S R ++ S S N+++KNLD + + L
Sbjct: 102 SQAAGERALEELNYAEIKGVRCRLMWSQRDPSLRRSGS-GNIFIKNLDPAIENKTLHDT- 159
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
FS G + S K+ G SKGFGFV + + + A AI +NG
Sbjct: 160 -----------------FSSFGKVLSCKVATDENGNSKGFGFVHYESDEAAQAAIENING 202
Query: 222 ILFHQKPLYVAIAQTKRERTSYLRIM 247
+L + + +YV K++R S + M
Sbjct: 203 MLLNGREIYVGPHLAKKDRESRFQEM 228
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 149/326 (45%), Gaps = 61/326 (18%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129
++F+ +G I S + QDGKSKG+GFV + +SA+ A+E+L + G ++Y
Sbjct: 248 FEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFENHDSAVKAVEELNDKEINGQKIYV--- 304
Query: 130 RAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEIELKQYFSQCGIIS 186
GR Q+ K + E++ NL+VKN++D +D +L++ F G I+
Sbjct: 305 --GRAQKKRERLEELKKQYEAARLEKLAKYQGVNLFVKNLDDAIDSEKLEEEFKSFGTIT 362
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR- 245
S K+M + G SKGFGFVCF+ P+EA +AI +N + + KPLYVA+AQ K R S L
Sbjct: 363 SAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQ 422
Query: 246 -------------------------IMYAKQG--PGLASTNFPV---HPTLYQRAL---- 271
+ Y +QG P N P +P + R
Sbjct: 423 QIQARNQMRMQNAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAPYPGPNPQMMMRGRGQPF 482
Query: 272 -QVYQAPGFRHGGMIP------------NGFSSPPPSPLFLTRAGQAAANNLTNGNQRAA 318
+ + PG +G +P NG + P R G N TN AA
Sbjct: 483 PEQWPRPG-PNGQPVPVYGIPPQFQQDFNGQNMRPQQQQQQPRGGYYPNRNQTNKRDLAA 541
Query: 319 ANNSMLAVASPDERKDILGQGLYPLV 344
+++ D++K ILG+ LYP +
Sbjct: 542 ----IISSVPQDQQKRILGEELYPKI 563
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
R C + + D + + I F NL IDN LH FS FG I S KV + G+S
Sbjct: 120 RPCRIMWSQRDPSARRSGDGNI-FIKNLHPAIDNKALHDTFSAFGKILSCKVAADEFGQS 178
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQES------ASFNNLYVKN 147
K +GFV Y T E+A AIE + + E++ + + +ES A+F N+YVKN
Sbjct: 179 KCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKN 238
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
+D + +EE +K F+ G I+S+ + + G SKGFGFV F
Sbjct: 239 IDLNYSEESFEK------------------LFAPYGKITSIYLEKDQDGKSKGFGFVNFE 280
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
N D A +A+ LN + + +YV AQ KRER L+ Y
Sbjct: 281 NHDSAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 321
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV---VSQDGKSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 54 YVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKYEDGEKAIEE 111
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L +EG R RI S D D N+++KN++ +D
Sbjct: 112 LNYTPIEG--------RPCRIMWSQR----------DPSARRSGDGNIFIKNLHPAIDNK 153
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ G SK FGFV + + A AI +NG+L + + ++V
Sbjct: 154 ALHDTFSAFGKILSCKVAADEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 213
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 214 HISKKDRESKFEEMKA 229
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ KL + F FG I S+KV+V GKSKG+GFV ++T E A AI ++
Sbjct: 338 FVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNT 397
Query: 117 ATVEGMELY 125
+ G LY
Sbjct: 398 RMINGKPLY 406
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDEANRAIN 217
LYV +N V+E L + FS G +SS+++ R +SK G+ +V + ++ +AI
Sbjct: 53 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRD--AVSKKSLGYAYVNYHKYEDGEKAIE 110
Query: 218 TLNGILFHQKPLYVAIAQ 235
LN +P + +Q
Sbjct: 111 ELNYTPIEGRPCRIMWSQ 128
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 114/205 (55%), Gaps = 14/205 (6%)
Query: 52 PTFIPFT----VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESA 107
PT + FT NL+ + +L ++ ++G+I + ++ GKSKG+GF + + E+A
Sbjct: 182 PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAA 241
Query: 108 LNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
N +E G +YA + +I+ A + + + NLY+KNI+
Sbjct: 242 KNVVENENGKIFHGKPIYAGRAQK-KIEREAELKHTF--------ETKYQGVNLYIKNID 292
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGI-SKGFGFVCFSNPDEANRAINTLNGILFHQ 226
D +D +L++ FSQ G I+S +M+ ++ SKGFGFVC++ PDEA RA+ +NG +
Sbjct: 293 DSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGT 352
Query: 227 KPLYVAIAQTKRERTSYLRIMYAKQ 251
KPLYVA+AQ K R + L + + ++
Sbjct: 353 KPLYVALAQRKDIRRAQLEMQHQQK 377
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ L+ FS FG+I S KVV SKG+GFV Y TQESA AI K+
Sbjct: 101 FIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + + + E+ N++ KN+++DV +LK
Sbjct: 161 MMINGQKVFVGPFKSSKERGQPT---------------EVKFTNVFFKNLSEDVGPDQLK 205
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ Q G I+++ IM ++G SKGFGF F + + A + NG +FH KP+Y AQ
Sbjct: 206 ELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQK 265
Query: 237 KRERTSYLRIMYAKQGPGL 255
K ER + L+ + + G+
Sbjct: 266 KIEREAELKHTFETKYQGV 284
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 25/198 (12%)
Query: 49 MATPTFIP-----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYS 102
MAT F P + +L + L +IF++ G + + +V + + S Y +V Y
Sbjct: 1 MAT-NFTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYY 59
Query: 103 TQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
A A++ L + G +A RI S +L + N++
Sbjct: 60 NGADAERALDTLNNTPIRG--------KACRIMWSQRDPSLRKSGVG----------NVF 101
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
+KN++ +D L FS G I S K++ + SKGFGFV + + A++AI +NG+
Sbjct: 102 IKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGM 161
Query: 223 LFHQKPLYVAIAQTKRER 240
+ + + ++V ++ +ER
Sbjct: 162 MINGQKVFVGPFKSSKER 179
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 116/243 (47%), Gaps = 59/243 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+A+ + + + +F+ FGD+ SS + Q+GKS+G+GFV ++T E+A A++ L
Sbjct: 248 YVKNIANEVTDDEFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNG 307
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN++D+VD+
Sbjct: 308 KDFRGQDLYV-----GRAQKKHEREEELRKSYEAARMEKASKYQGVNLYIKNLDDEVDDE 362
Query: 174 ELKQYFSQCGIISSVKIMRTN--------------------------------------- 194
+L+Q F+ G I+S K+MR N
Sbjct: 363 KLRQLFADFGPITSAKVMRDNATESGNEDEGSSDDKENEPKKEEGEEKAEEAKSEDKEDA 422
Query: 195 ------------RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G SKGFGFVCFSNPD+A +A+ +N + + KPLYVA+AQ K R S
Sbjct: 423 DKKADKKSDKKPHGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKS 482
Query: 243 YLR 245
L
Sbjct: 483 QLE 485
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 101/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+ +
Sbjct: 155 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNG 214
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + +E A+F N+YVKN+ ++VT DD
Sbjct: 215 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIANEVT--------------DD- 259
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + F+ G ++S + R G S+GFGFV F+ + A +A++ LNG F + LY
Sbjct: 260 ---EFRDLFTAFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLY 316
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 317 VGRAQKKHEREEELRKSY 334
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+T A+E+
Sbjct: 67 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 124
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 125 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 166
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 167 ALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 226
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 227 HIPKKDRQSKFEEMKA 242
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V ++ + +A+
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSL--GYAYVNYNTTSDGEKAL 122
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 123 EELNYTLIKGRP---------------CRIMWSQRDPALRKT 149
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 115/198 (58%), Gaps = 10/198 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L +IF ++GDI S+ V++ DGKS+ +GF+ + ++A +A+++L
Sbjct: 216 FVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNG 275
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y GR Q+ + + +K + ++ DK NLY+KN++D + +
Sbjct: 276 KKINDKEWYV-----GRAQKKSE-REMELKRRFEQSLKDAADKYQGLNLYLKNLDDSIGD 329
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS G I+S K+MR G+SKG GFV FS +EA++A+ +NG + KPLYVA
Sbjct: 330 DQLCELFSNFGKITSYKVMRDQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVA 389
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K +R + L++ K
Sbjct: 390 FAQRKEDRKAMLQVTVLK 407
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN LH+ FS FG I S KV V + G+SKG+GFVQY +E+A NAI+ L
Sbjct: 125 FIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEAAQNAIKSLNG 184
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++ P +R S FNN++VKNL + T+E
Sbjct: 185 MLINDKPVFVGPFVRKQERDHSFDKTKFNNVFVKNLSESTTKE----------------- 227
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + F + G I+S +M G S+ FGF+ F NPD A+ A+ LNG + K YV
Sbjct: 228 -DLLKIFGEYGDITSAVVMIGMDGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYVG 286
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 287 RAQKKSEREMELK 299
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 23/206 (11%)
Query: 38 ALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSK 94
A+++ V A PT + +L + + +L+++FS+ G + S +V V S+ +S
Sbjct: 18 AVVSPGAVGVAQPLPTTSLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSR--RSL 75
Query: 95 GYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE 154
GY +V YS A A+E L A + + R+ S D +
Sbjct: 76 GYAYVNYSNPLDAARALEVLNFAALNNKPI--------RVMYSNR----------DPSSR 117
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
N+++KN++ +D L + FS G I S K+ G SKGFGFV + + A
Sbjct: 118 RSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFGFVQYDKEEAAQN 177
Query: 215 AINTLNGILFHQKPLYVAIAQTKRER 240
AI +LNG+L + KP++V K+ER
Sbjct: 178 AIKSLNGMLINDKPVFVGPFVRKQER 203
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 100/169 (59%), Gaps = 10/169 (5%)
Query: 81 QSSKVVVS--QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESA 138
++S +V+ +DGK KG+GFV Y E AL A+E+L +G ELY GR Q+
Sbjct: 246 KTSSIVLEKGEDGKLKGFGFVNYENHEDALKAVEELNNTEFKGQELYV-----GRAQKKY 300
Query: 139 SFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR 195
+ + E++ NL++KN++D +D+ +LK+ F+ G I+S K+MRT
Sbjct: 301 ERMQALKQQYEATRLEKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTEN 360
Query: 196 GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G SKGFGFVCFS+P+EA +AI N + KPLYVAIAQ K R S L
Sbjct: 361 GKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRSQL 409
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 103/198 (52%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN L+ FS FG+I SSK+ ++G SKG+GFV + + +A AI+ L
Sbjct: 131 FIKNLNADIDNKALYDTFSVFGNILSSKIATDENGNSKGFGFVHFEEEAAAKEAIDALNG 190
Query: 117 ATVEGMELY-APSL----RAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G E+Y AP L R +++++ A+F N+YVKN+ D TEE +
Sbjct: 191 MLLNGQEIYVAPHLSRKERDSQLEKTRANFTNVYVKNVPLDTTEEEFKELF--------- 241
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ G SS+ + + G KGFGFV + N ++A +A+ LN F + LY
Sbjct: 242 ---------EKPGKTSSIVLEKGEDGKLKGFGFVNYENHEDALKAVEELNNTEFKGQELY 292
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER L+ Y
Sbjct: 293 VGRAQKKYERMQALKQQY 310
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ L+ IFS G + S +V K S GY +V ++ E+ AIE+L
Sbjct: 43 YVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAYVNFADHEAGKVAIERLN 102
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S D + + N+++KN+N D+D L
Sbjct: 103 YTPIKG--------RLCRIMWSQR----------DPALRKKGNGNIFIKNLNADIDNKAL 144
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S KI G SKGFGFV F A AI+ LNG+L + + +YVA
Sbjct: 145 YDTFSVFGNILSSKIATDENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVAPHL 204
Query: 236 TKRERTSYLRIMYA 249
+++ER S L A
Sbjct: 205 SRKERDSQLEKTRA 218
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ KL + F+ FG I S+KV+ +++GKSKG+GFV +S+ E A AI +
Sbjct: 327 FIKNLDDSIDDEKLKEEFAPFGTITSTKVMRTENGKSKGFGFVCFSSPEEATKAITEKNQ 386
Query: 117 ATVEGMELY 125
V G LY
Sbjct: 387 QIVAGKPLY 395
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 108/196 (55%), Gaps = 16/196 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV ++ SKGYGFV + T+E+A NAI+K+
Sbjct: 84 FIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNG 143
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G +++ R+ R ++ ++ N+Y+KN DD+D+ +
Sbjct: 144 MLLNGRKVFVGKFVPRSEREKQLGQKARRFM--------------NVYIKNFGDDLDDEK 189
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L++ F + G I+S K+M G KGFGFV F +P+ A +A+N LN + K LYV A
Sbjct: 190 LREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYVGRA 249
Query: 235 QTKRERTSYLRIMYAK 250
Q K ER + L+ + +
Sbjct: 250 QKKSERAAELKRRFEQ 265
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL ++F K+G I S+KV+ + GK KG+GFV + E+A A+ L
Sbjct: 177 YIKNFGDDLDDEKLREMFEKYGKITSAKVMADETGKPKGFGFVSFEDPENAEKAVNDLNN 236
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G LY RA + E A+ + L D NLYVKN++D +D+ L+
Sbjct: 237 KELNGKVLYVG--RAQKKSERAAELKRRFEQLKMDRINRYQGVNLYVKNLDDSIDDERLR 294
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
+ F+ G I+S K+M + G SKGFGFVCFS P+EA +
Sbjct: 295 KEFTPFGTITSAKVMTDSNGRSKGFGFVCFSAPEEATK 332
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ SKG+GFV F + AN AI +
Sbjct: 82 NVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKV 141
Query: 220 NGILFHQKPLYVA--IAQTKRER 240
NG+L + + ++V + +++RE+
Sbjct: 142 NGMLLNGRKVFVGKFVPRSEREK 164
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 131/260 (50%), Gaps = 36/260 (13%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
++LA T + ++ ++F+ +G I S + QDGKSKG+GFV + ++A+ A+E+L
Sbjct: 237 IDLAYTEEEFE--KLFAPYGKITSIYLEKDQDGKSKGFGFVNFEEHDAAVKAVEELNDKE 294
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEIEL 175
+ G ++Y GR Q+ K + E++ NL+VKN++D +D +L
Sbjct: 295 INGQKIYV-----GRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKL 349
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F G I+S K+M + G SKGFGFVCF+ P+EA +AI +N + + KPLYVA+AQ
Sbjct: 350 EEEFKPFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVALAQ 409
Query: 236 TKRERTSYL----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMI 285
K R S L R+ A GL P P Y + G
Sbjct: 410 RKDVRRSQLEQQIQARNQMRMQNAAAAGGLPGQFMP--PMFYG-----------QQGFFP 456
Query: 286 PNGFSSPP---PSPLFLTRA 302
PNG + P P+P + R
Sbjct: 457 PNGRGNAPFPGPNPQMMMRG 476
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 107/221 (48%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
R C + + D + + I F NL IDN LH FS FG I S KV + G+S
Sbjct: 118 RPCRIMWSQRDPSARRSGDGNI-FIKNLHPAIDNKALHDTFSAFGKILSCKVATDELGQS 176
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQES------ASFNNLYVKN 147
K +GFV Y T E+A AIE + + E++ + + +ES A+F N+YVKN
Sbjct: 177 KCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKN 236
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
+D TEE E ++ F+ G I+S+ + + G SKGFGFV F
Sbjct: 237 IDLAYTEE------------------EFEKLFAPYGKITSIYLEKDQDGKSKGFGFVNFE 278
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
D A +A+ LN + + +YV AQ KRER L+ Y
Sbjct: 279 EHDAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQY 319
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV---VSQDGKSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 52 YVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKFEDGEKAIEE 109
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L +EG R RI S D D N+++KN++ +D
Sbjct: 110 LNYTPIEG--------RPCRIMWSQR----------DPSARRSGDGNIFIKNLHPAIDNK 151
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ G SK FGFV + + A AI +NG+L + + ++V
Sbjct: 152 ALHDTFSAFGKILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 211
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 212 HISKKDRESKFEEMKA 227
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ KL + F FG I S+KV+V GKSKG+GFV ++T E A AI ++
Sbjct: 336 FVKNLDDSIDSEKLEEEFKPFGTITSAKVMVDDAGKSKGFGFVCFTTPEEATKAITEMNQ 395
Query: 117 ATVEGMELY 125
V LY
Sbjct: 396 RMVNNKPLY 404
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 107/196 (54%), Gaps = 16/196 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ F++FG+I S KV V G+S+GYGFVQ+ +++A +AI++
Sbjct: 128 FIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQ--- 184
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
V GM L E F +V+ + D+T I N+YVKN+ D + +L
Sbjct: 185 --VNGMLLI----------EKQVFVGPFVRRQERDLTGGIAKFNNVYVKNLGDATTDDDL 232
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F + G ISS +MR G SK FGFV F N D+A A+ LNG K YV AQ
Sbjct: 233 KRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQ 292
Query: 236 TKRERTSYLRIMYAKQ 251
K ER + LR Y ++
Sbjct: 293 KKSEREAELRARYDQE 308
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 20/221 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + L ++F +FG I S+ V+ +GKSK +GFV + + A A+E+L
Sbjct: 219 YVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNG 278
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++ E Y GR Q+ + ++ D +E DK NLY+KN++D +D+
Sbjct: 279 KKMDDKEWYV-----GRAQKKSE-REAELRARYDQERKERSDKYQGVNLYLKNLDDTIDD 332
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G I S K+MR +G SKG GFV FS +EANRA+ +NG + KP+YVA
Sbjct: 333 DKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYVA 392
Query: 233 IAQTKRERTSY---------LRIMYAKQGPGLASTNFPVHP 264
+AQ + ER + R+ GP +AS+ HP
Sbjct: 393 LAQKRDERRRFNAAQAQFAPFRVPVG-LGPAVASSVPMFHP 432
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 23/187 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + +L+ +F++ + S +V ++S+ +S GY +V Y+T + A A+E
Sbjct: 40 YVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISK--RSLGYAYVNYNTGQDASRALEM 97
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + V G + + + D + + + N+++KN++ +D
Sbjct: 98 LNFSLVNGKPI-----------------RIMFSHRDPSIRKSGM-ANIFIKNLDKSIDNK 139
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+Q G I S K+ + G S+G+GFV F D A AI +NG+L +K ++V
Sbjct: 140 ALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGP 199
Query: 234 AQTKRER 240
++ER
Sbjct: 200 FVRRQER 206
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDE 211
+ +LYV +++ +V E +L F+Q + S+++ R ISK G+ +V ++ +
Sbjct: 33 QFFSTSLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDL--ISKRSLGYAYVNYNTGQD 90
Query: 212 ANRAINTLNGILFHQKPLYVAIAQ 235
A+RA+ LN L + KP+ + +
Sbjct: 91 ASRALEMLNFSLVNGKPIRIMFSH 114
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 152/328 (46%), Gaps = 44/328 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + +F KFG I S +V + GK +G+GFV + + E+A A++++
Sbjct: 263 YIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHEAAQKAVDEMND 322
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
G +LY + R + A Y + + + + NL++KN++D+VD+ LK
Sbjct: 323 YEFHGKKLYVGRAQK-RHEREAELRKRY-EQMKLEKMSKYQGVNLFIKNLSDEVDDNLLK 380
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS G I+S K+M G SKGFGFVC+S+P+EA +AI +N + KPLYVA+AQ
Sbjct: 381 TEFSAFGTITSAKVMTDENGKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQR 440
Query: 237 KRERTSYL----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHG---- 282
K R S L R+ G+ S F + +Y Y P G
Sbjct: 441 KDVRRSQLEAQIQARNQFRMQQQVAAAGM-SAQFGIPGAMY-YGPGGYPLPAGARGVPMP 498
Query: 283 --------------------GMI---PNGFSSP--PPSPLFLTRAGQAAANNLTNGNQRA 317
GM+ P G ++P P P + + Q A +NG
Sbjct: 499 HPNMMPPNGKWPVDGAAPQPGMVPVYPPGVAAPNFPGYPRPVVPSEQPAGQEASNGAVPV 558
Query: 318 AA-NNSMLAVASPDERKDILGQGLYPLV 344
A + + + +P+ +K ILG+ YPL+
Sbjct: 559 PAFDMNAFSAETPENQKQILGEYFYPLI 586
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
R C + + D S T T F NL IDN LH FS FG I S KV + + G S
Sbjct: 148 RACRIMWSQRD-PSLRKTGTGNIFIKNLDPAIDNKALHDTFSAFGTILSCKVALDEYGNS 206
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT 153
KGYGFV +++ +SA AIE V GM L + G +V D
Sbjct: 207 KGYGFVHFASIDSANAAIEH-----VNGMLLNDKKVYVGH----------HVSRRDRQSK 251
Query: 154 EEILD---KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPD 210
E + N+Y+KNI+ +V + E F + G I+S +++ G +GFGFV F + +
Sbjct: 252 FEAMKANFTNVYIKNIDPEVTDEEFSGLFEKFGAITSFSLVKDESGKPRGFGFVNFESHE 311
Query: 211 EANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAK 250
A +A++ +N FH K LYV AQ + ER + LR Y +
Sbjct: 312 AAQKAVDEMNDYEFHGKKLYVGRAQKRHEREAELRKRYEQ 351
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IFS G + S + V +D +S GY +V Y + A+E+
Sbjct: 82 YVGELDPSVTEAMLFEIFSTVGPVAS--IRVCRDAVTRQSLGYAYVNYHNADDGEKALEE 139
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G RA RI S D + N+++KN++ +D
Sbjct: 140 LNYSLIKG--------RACRIMWSQR----------DPSLRKTGTGNIFIKNLDPAIDNK 181
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ G SKG+GFV F++ D AN AI +NG+L + K +YV
Sbjct: 182 ALHDTFSAFGTILSCKVALDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGH 241
Query: 234 AQTKRERTSYLRIMYA 249
++R+R S M A
Sbjct: 242 HVSRRDRQSKFEAMKA 257
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 115/243 (47%), Gaps = 60/243 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N++ + + + +F+ FGD+ SS + Q+GKS+G+GFV ++T E+A A++ L
Sbjct: 248 YIKNISGEVTDDEFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNG 307
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN++DDVD+
Sbjct: 308 KDFRGQDLYV-----GRAQKKHEREEELRKSYEAARMEKANKYQGVNLYIKNLDDDVDDE 362
Query: 174 ELKQYFSQCGIISSVKIMRTN--------------------------------------- 194
+L+Q F+ G I+S K+MR N
Sbjct: 363 KLRQLFADFGPITSAKVMRDNATDSGNEDEGSSEEKETEAKKDEEEEEKPEEAKTDDKED 422
Query: 195 -------------RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
G SKGFGFVCFSNPD+A +A+ +N + + KPLYVA+AQ K R
Sbjct: 423 ADKKSDKKSDKKLHGKSKGFGFVCFSNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRK 482
Query: 242 SYL 244
S L
Sbjct: 483 SQL 485
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 101/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+ +
Sbjct: 155 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNG 214
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + +E A+F N+Y+KN+ +VT++
Sbjct: 215 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYIKNISGEVTDD--------------- 259
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + F+ G ++S + R G S+GFGFV F+ + A +A++ LNG F + LY
Sbjct: 260 ---EFRDLFTPFGDVTSSSLARDQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLY 316
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 317 VGRAQKKHEREEELRKSY 334
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+T A+E+
Sbjct: 67 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 124
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 125 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 166
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 167 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 226
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 227 HIPKKDRQSKFEEMKA 242
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V ++ + +A+
Sbjct: 65 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSL--GYAYVNYNTTSDGEKAL 122
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 123 EELNYTLIKGRP---------------CRIMWSQRDPALRKT 149
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 152/315 (48%), Gaps = 42/315 (13%)
Query: 7 ALNNNDSAILGTPFSLYVGDLDSTDLLRLCSA-LIASIDVHSAMATP------------- 52
AL+ N ++ G F + + D+ D + + L+ ++V+ AM P
Sbjct: 170 ALDENGNS-RGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKA 228
Query: 53 --TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNA 110
T I + N+ + + Q+FS++G+I S+ + +GK KG+GFV + +A A
Sbjct: 229 NFTNI-YVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKA 287
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNIN 167
+E+L G E + +L GR Q+ K + E++ NL++KN++
Sbjct: 288 VEEL-----NGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLD 342
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
D +D+ +LK+ F+ G I+S ++MR G SKGFGFVCFS+P+EA +A+ N + K
Sbjct: 343 DSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGK 402
Query: 228 PLYVAIAQTKRERTSYL--------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF 279
PLYVAIAQ K R S L +I + +Q A+ P Y P
Sbjct: 403 PLYVAIAQRKDVRRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPGQY--------MPQM 454
Query: 280 RHGGMIPNGFSSPPP 294
+G M P GF P P
Sbjct: 455 FYGVMAPRGFPGPNP 469
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH+ FS FG++ S KV + ++G S+G+GFV + + A +AIE +
Sbjct: 141 FIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNG 200
Query: 117 ATVEGMELYA-----PSLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G+E+Y R +++E+ A+F N+YVKN+D + T+E
Sbjct: 201 MLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDE--------------- 245
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E +Q FSQ G I S + + G KGFGFV F + + A +A+ LNG F + LY
Sbjct: 246 ---EFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALY 302
Query: 231 VAIAQTKRERTSYLRIMYAK 250
V AQ K ER L+ Y +
Sbjct: 303 VGRAQKKYERAEELKKQYEQ 322
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ L I L+ +FS G I S + V +D +K GY +V Y+ E+ AI++
Sbjct: 53 YVGELDPNITEALLYDVFSPLGPI--SSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L A + G R RI S D + N+++KN++ +D
Sbjct: 111 LNYAEING--------RPCRIMWSER----------DPAIRKKGSGNIFIKNLHPAIDNK 152
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L + FS G + S K+ G S+GFGFV F +A AI +NG+L + +YVA+
Sbjct: 153 ALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAM 212
Query: 234 AQTKRERTSYLR 245
K++R S L
Sbjct: 213 HVPKKDRISKLE 224
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 166/349 (47%), Gaps = 69/349 (19%)
Query: 52 PTFIPFT----VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQES 106
PT I FT NLA + + +L ++ + +G I + +++ + GKSKG+ F + + ++
Sbjct: 182 PTEIKFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADA 241
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
A N +E G LYA GR Q+ L + NLY+KNI
Sbjct: 242 AKNVVEIENGKVFHGKPLYA-----GRAQKKIERE----AELKHTFETKYQGVNLYIKNI 292
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGI-SKGFGFVCFSNPDEANRAINTLNGILFH 225
+D +D +L++ FSQ G I+S +M+ ++ SKGFGFVC+++PDEA RA+ +NG +
Sbjct: 293 DDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVTEMNGRMIG 352
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAKQ-GPGLASTNFPVH---PTLYQRA----LQVYQ-- 275
KPLYVA+AQ K R + L + + ++ G+ T P + P + A VYQ
Sbjct: 353 TKPLYVALAQRKDIRRAQLEMQHQQKFKAGMRQTMAPAYSGGPVFFTPAPVTPAVVYQQM 412
Query: 276 -------------APGFRHG------------------GMIPNG--------FSSPPPSP 296
PG ++G G PNG ++ P+
Sbjct: 413 MPRPRNWNGAPVGVPGNQYGMNYVRGGGQPRPNGQRPTGPRPNGQRPDSAQPIATQQPAV 472
Query: 297 LFLTRAGQAAANNLTNGNQRAAAN-NSMLAVASPDERKDILGQGLYPLV 344
T+ QAA + +Q AA +S+LA+ + D++ LG+ LYPL+
Sbjct: 473 DQATQQPQAA----SGASQEAAPTLSSILALPTRDQQNVALGELLYPLI 517
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 102/200 (51%), Gaps = 16/200 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ L+ FS FG+I S KVV + SKG+GFV Y +Q+SA AI K+
Sbjct: 101 FIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDNNSSKGFGFVHYESQDSADKAIAKVNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + + + EI N++ KN+ +DV +LK
Sbjct: 161 MMINGQKVFVGPFKSSKERGQPT---------------EIKFTNVFFKNLAEDVTSDQLK 205
Query: 177 QYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ + G I++V IM + G SKGF F F + D A + NG +FH KPLY AQ
Sbjct: 206 ELLAPYGTITNVAIMLDEKTGKSKGFAFANFESADAAKNVVEIENGKVFHGKPLYAGRAQ 265
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K ER + L+ + + G+
Sbjct: 266 KKIEREAELKHTFETKYQGV 285
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 24/204 (11%)
Query: 51 TPTFIP-----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQ 104
T +F P + +L + L ++F++ G + + +V + + S Y +V Y
Sbjct: 2 TSSFTPISSSLYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNA 61
Query: 105 ESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVK 164
A A++ L + G + RI S +L + N+++K
Sbjct: 62 ADAERALDTLNNTPIRG--------KPCRIMWSQRDPSLRKSGVG----------NVFIK 103
Query: 165 NINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF 224
N++ +D L FS G I S K++ + SKGFGFV + + D A++AI +NG++
Sbjct: 104 NLDKGIDHKALYDTFSAFGNILSCKVVTDDNNSSKGFGFVHYESQDSADKAIAKVNGMMI 163
Query: 225 HQKPLYVAIAQTKRERTSYLRIMY 248
+ + ++V ++ +ER I +
Sbjct: 164 NGQKVFVGPFKSSKERGQPTEIKF 187
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 107/196 (54%), Gaps = 16/196 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ F++FG+I S KV V G+S+GYGFVQ+ +++A +AI++
Sbjct: 128 FIKNLDKSIDNKALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQ--- 184
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
V GM L E F +V+ + D+T + N+YVKN+ D + +L
Sbjct: 185 --VNGMLLI----------EKQVFVGPFVRRQERDLTGGVTKFNNVYVKNLGDATTDDDL 232
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F + G ISS +MR G SK FGFV F N D+A A+ LNG K YV AQ
Sbjct: 233 KRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQ 292
Query: 236 TKRERTSYLRIMYAKQ 251
K ER + LR Y ++
Sbjct: 293 KKSEREAELRARYDQE 308
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 20/221 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + L ++F +FG I S+ V+ +GKSK +GFV + + A A+E+L
Sbjct: 219 YVKNLGDATTDDDLKRVFGEFGPISSAVVMRDPEGKSKCFGFVNFENADDAALAVEELNG 278
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++ E Y GR Q+ + ++ D +E DK NLY+KN++D +D+
Sbjct: 279 KKMDDKEWYV-----GRAQKKSE-REAELRARYDQERKERSDKYQGVNLYLKNLDDTIDD 332
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G I S K+MR +G SKG GFV FS +EANRA+ +NG + KP+YVA
Sbjct: 333 DKLRELFHGFGTIISCKVMRDPQGHSKGSGFVAFSTTEEANRAMTEMNGRMVANKPIYVA 392
Query: 233 IAQTKRERTSY---------LRIMYAKQGPGLASTNFPVHP 264
+AQ + ER + R+ GP +AS+ HP
Sbjct: 393 LAQKRDERRRFNAAQAQFAPFRVPVG-LGPAVASSVPMFHP 432
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 23/187 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + +L+ +F++ + S +V ++S+ +S GY +V Y+T + A A+E
Sbjct: 40 YVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDLISK--RSLGYAYVNYNTGQDASRALEM 97
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + V G + + + D + + + N+++KN++ +D
Sbjct: 98 LNFSLVNGKPI-----------------RIMFSHRDPSIRKSGM-ANIFIKNLDKSIDNK 139
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+Q G I S K+ + G S+G+GFV F D A AI +NG+L +K ++V
Sbjct: 140 ALYDTFAQFGNILSCKVAVDSSGQSRGYGFVQFEQEDAAQSAIKQVNGMLLIEKQVFVGP 199
Query: 234 AQTKRER 240
++ER
Sbjct: 200 FVRRQER 206
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDE 211
+ +LYV +++ +V E +L F+Q + S+++ R ISK G+ +V ++ +
Sbjct: 33 QFFSTSLYVGDLDPNVTEGQLYDVFNQVAPVLSIRVCRDL--ISKRSLGYAYVNYNTGQD 90
Query: 212 ANRAINTLNGILFHQKPLYVAIAQ 235
A+RA+ LN L + KP+ + +
Sbjct: 91 ASRALEMLNFSLVNGKPIRIMFSH 114
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 135/253 (53%), Gaps = 27/253 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + L ++F K+G I S +V++ ++ KS+G+GFV + ESA A+++L
Sbjct: 186 YVKNFGDELTDESLKEMFEKYGTITSHRVMIKEN-KSRGFGFVAFENPESAEVAVQELNG 244
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ +G LY GR Q+ + +K + + E L + NLYVKN++D +D
Sbjct: 245 KELGDGKVLYV-----GRAQKKNE-RQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSID 298
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ FS G I+S K+M G SKGFGFVCFS +EA +A+ +NG + KPLYV
Sbjct: 299 DERLRKEFSPFGTITSAKVM-LEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYV 357
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSS 291
A+AQ K +R ++L Y ++ +A+ Q Q++Q PG G +P +
Sbjct: 358 ALAQRKEDRKAHLASQYMQR---MANMRM-------QHMGQIFQ-PGGNGGYYVP---TI 403
Query: 292 PPPSPLFLTRAGQ 304
P P F + Q
Sbjct: 404 PQPQRFFGKQVSQ 416
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 106/192 (55%), Gaps = 18/192 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+ESA +IEK
Sbjct: 93 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEK--- 149
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI-LDKNLYVKNINDDVDEIEL 175
V GM L A + GR + K + ++ E+ L N+YVKN D++ + L
Sbjct: 150 --VNGMLLNAKKVFVGRF--------IPRKEREKELGEKAKLFTNVYVKNFGDELTDESL 199
Query: 176 KQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
K+ F + G I+S ++M + N+ S+GFGFV F NP+ A A+ LNG L K LYV
Sbjct: 200 KEMFEKYGTITSHRVMIKENK--SRGFGFVAFENPESAEVAVQELNGKELGDGKVLYVGR 257
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 258 AQKKNERQMELK 269
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L + I L + FS G + S +V VV++ +S GY +V + A A++
Sbjct: 5 YVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTR--RSLGYAYVNFQQPADAERALDT 62
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++G R RI S +L + N+++KN++ ++D
Sbjct: 63 MNFDLIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKNIDNK 104
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ FS G I S K+ + +G SKG+GFV F + AN +I +NG+L + K ++V
Sbjct: 105 AMYDTFSAFGNILSCKVAQDEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGR 164
Query: 234 AQTKRERTSYL 244
++ER L
Sbjct: 165 FIPRKEREKEL 175
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 135/270 (50%), Gaps = 33/270 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV-VVSQDGKS--------------KGYGFVQY 101
+ L S+ D+ KL + F K G + S KV V Q+G+ +G+GFV +
Sbjct: 221 YVKGLPSSWDDAKLREEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGFGFVNF 280
Query: 102 STQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-- 159
ESA+ AIE L A + E +L R Q+ S +++ D V E ++K
Sbjct: 281 EEHESAVKAIEALNNAEMPDGE-GTTTLYCARAQKK-SERARELQSKHDQVKMERMNKFQ 338
Query: 160 --NLYVKNINDDVDEIELKQYFSQCGIISSVKIM--RTNRGISKGFGFVCFSNPDEANRA 215
N+YVKN+++ V E +++ F+ G I+S ++M +N SKGFGFVCFS P+EA +A
Sbjct: 339 GVNVYVKNLDEGVTEDAMREAFAPYGTITSARVMVDNSNNNQSKGFGFVCFSAPEEATKA 398
Query: 216 INTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHP---TLYQRALQ 272
I +NG + KP+YVA+AQ + R + L +A++ G+ P+ P +Y
Sbjct: 399 ITEMNGKMLLNKPIYVALAQRREVRRTQLEAQFAQRTGGMPPRGMPMAPGAQGMYGMPYW 458
Query: 273 VYQAPG-------FRHGGMIPNGFSSPPPS 295
+ PG F M+P G P P+
Sbjct: 459 MGAQPGMPQQPRQFMMPQMMPRGPRGPMPA 488
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL T+DN L+ FS FG+I S KV G+SKGYG+V Y SA AI K+
Sbjct: 133 FVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKING 192
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ +V+ D+ + NLYVK + D+ +L+
Sbjct: 193 MLIAGKQVHV---------------GHFVRR--DNRAGQADWTNLYVKGLPSSWDDAKLR 235
Query: 177 QYFSQCGIISSVKIM---RTNRG------------ISKGFGFVCFSNPDEANRAINTLNG 221
+ F + G ++S K+ + +G S+GFGFV F + A +AI LN
Sbjct: 236 EEFEKHGAVTSCKVQVAPQEGQGDESKEKGKGGEGKSRGFGFVNFEEHESAVKAIEALNN 295
Query: 222 ILF----HQKPLYVAIAQTKRERTSYLR 245
LY A AQ K ER L+
Sbjct: 296 AEMPDGEGTTTLYCARAQKKSERARELQ 323
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 19/177 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L+ + L +IFS+ G + S +V + +S GY +V + A A++ +
Sbjct: 45 YVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSLGYAYVNFHNVADAERALDTMN 104
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
T++ +A RI S +L + N++VKN+++ VD L
Sbjct: 105 FTTIKD--------QACRIMWSQRDPSLRRSGVG----------NIFVKNLDETVDNKAL 146
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
FS G I S K+ + G SKG+G+V + AN AI +NG+L K ++V
Sbjct: 147 YDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQVHVG 203
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FSQ G ++S+++ R T R + G+ +V F N +A RA+
Sbjct: 43 SLYVGDLSKDVAEATLFEIFSQVGPVASIRVCRDTVTRRSL--GYAYVNFHNVADAERAL 100
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + I + RIM++++ P L
Sbjct: 101 DTMN---------FTTI------KDQACRIMWSQRDPSL 124
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 111/191 (58%), Gaps = 11/191 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 188 YIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNG 247
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G L+ GR Q+ A +K + + + E + LY+KN+++ +D+
Sbjct: 248 KDINGQLLFV-----GRAQKKAE-RQAELKQMFEQLKHERFRRCRGAKLYIKNLDETIDD 301
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G IS VK+M+ G SKGFG +CFS+ +EA +A+ +NG + KPL +A
Sbjct: 302 EKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIA 360
Query: 233 IAQTKRERTSY 243
+AQ ER ++
Sbjct: 361 LAQKPXERKTF 371
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 107/192 (55%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D S+GY FV + Q +A AIE++
Sbjct: 96 FIKNLDRSIDNKTLYEHFSAFGKILSSKVM-SDDHGSRGYAFVHFQNQIAADRAIEEMNG 154
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ L+ ++ + +E A F N E N+Y+KN D++D+ LK
Sbjct: 155 TLLKDCRLFVGRFKSRKDRE-AEFQN---------KAHEFT--NVYIKNFGDEMDDERLK 202
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M + G SKGFGFV F + + A RA+ +NG + + L+V AQ
Sbjct: 203 EVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQK 262
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 263 KAERQAELKQMF 274
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M + G S+G+ FV F N A+RAI +
Sbjct: 94 NVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEM 152
Query: 220 NGILFHQKPLYVAIAQTKRERTS 242
NG L L+V +++++R +
Sbjct: 153 NGTLLKDCRLFVGRFKSRKDREA 175
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 116/196 (59%), Gaps = 12/196 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG-KSKGYGFVQYSTQESALNAIEKLY 115
+ NL+ D+ KL +IF +G I S+KV++ KSK +GFV + E+A A+E L
Sbjct: 193 YVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALN 252
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
G LY + +I+ A + + + +E +++ NL+VKN++D++D
Sbjct: 253 GNDNAGKILYVGRAQT-KIERQAELKEKF-----ERIRKERINRYQGVNLFVKNLDDNID 306
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+Q G I+S K+M T G SKGFGFV FS+P+EA +AI +N + +PLYV
Sbjct: 307 DKRLRKEFAQFGTITSAKVM-TENGRSKGFGFVYFSSPEEATKAIVEMNEKIIEARPLYV 365
Query: 232 AIAQTKRERTSYLRIM 247
A+AQ K +R +YL ++
Sbjct: 366 ALAQRKEDRKAYLALL 381
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 106/195 (54%), Gaps = 14/195 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L +IDN L+ FS FG+I S K+V + G S+GYGFV + T E+A AIEK+
Sbjct: 101 FIKKLDKSIDNKALYDTFSAFGNISSCKIVCDEHG-SRGYGFVHFETDEAARIAIEKVNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ + R E +L ++ + N+YVKN++++ D+ +L+
Sbjct: 160 MLLNGKKVFVGRFMSRR--ERLEVLDLGMRKFN----------NVYVKNLSEETDDEKLR 207
Query: 177 QYFSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F G I S K+M + SK FGFV F NP+ A +A+ LNG K LYV AQ
Sbjct: 208 EIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKILYVGRAQ 267
Query: 236 TKRERTSYLRIMYAK 250
TK ER + L+ + +
Sbjct: 268 TKIERQAELKEKFER 282
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++K ++ +D L FS G ISS KI+ G S+G+GFV F + A AI +
Sbjct: 99 NVFIKKLDKSIDNKALYDTFSAFGNISSCKIVCDEHG-SRGYGFVHFETDEAARIAIEKV 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K ++V ++RER L
Sbjct: 158 NGMLLNGKKVFVGRFMSRRERLEVL 182
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 23/102 (22%)
Query: 137 SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---T 193
S + +LYV++L DVTE++L K FS G + SV++ R T
Sbjct: 6 SPAVASLYVRDLHPDVTEDMLFKK------------------FSTAGPVLSVRVCRDMIT 47
Query: 194 NRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
R + G+ +V F P +A RA++T+N + +P+ + Q
Sbjct: 48 RRSL--GYAYVNFHQPADAERALDTMNFDIIKGRPIRITWYQ 87
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 108/193 (55%), Gaps = 18/193 (9%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
++L +T ++++ +F +G I S + +GKS+G+GFV + E A+ A+E L
Sbjct: 231 LDLEATEEDFE--NLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTE 288
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-------NLYVKNINDDVD 171
+G LY GR Q+ ++ L L+K NL++KN++D +D
Sbjct: 289 YKGQTLYV-----GRAQKKYE----RLQELKKQYQASKLEKLAKYQGINLFIKNLDDSID 339
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ +LK+ F+ G I+S ++MRT G SKGFGFVCFS P+EA RAI N + KPLYV
Sbjct: 340 DEKLKEEFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYV 399
Query: 232 AIAQTKRERTSYL 244
AIAQ K R S L
Sbjct: 400 AIAQRKDVRRSQL 412
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 106/198 (53%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L++ FS FG+I S K+ + GKSKG+GFV + +E+A AI+ +
Sbjct: 134 FIKNLHPDIDNKTLYETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAING 193
Query: 117 ATVEGMELY-APSL----RAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G E+Y AP + R ++ E+ A+F N+YVKNLD + TEE
Sbjct: 194 MLLNGQEVYVAPHVSKKDRQSKLDEARANFTNVYVKNLDLEATEE--------------- 238
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ + F G I+SV + + G S+GFGFV F N ++A +A+ LN + + LY
Sbjct: 239 ---DFENLFKPYGTITSVALEKDAEGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLY 295
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER L+ Y
Sbjct: 296 VGRAQKKYERLQELKKQY 313
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 19/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ L ++ L+ IFS G + S +V K S GY +V ++ E+ AIEKL
Sbjct: 46 YVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEKLN 105
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S ++ K N+++KN++ D+D L
Sbjct: 106 YTAIKG--------RPCRIMWSQRDPSMRKKG----------SGNIFIKNLHPDIDNKTL 147
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S KI G SKGFGFV F N + A AI+ +NG+L + + +YVA
Sbjct: 148 YETFSVFGNILSCKIANDETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHV 207
Query: 236 TKRERTSYL 244
+K++R S L
Sbjct: 208 SKKDRQSKL 216
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ KL + F+ FG I S++V+ +++GKSKG+GFV +ST E A AI +
Sbjct: 330 FIKNLDDSIDDEKLKEEFAPFGTITSARVMRTENGKSKGFGFVCFSTPEEATRAITEKNQ 389
Query: 117 ATVEGMELY 125
V G LY
Sbjct: 390 QIVAGKPLY 398
>gi|326531316|dbj|BAK05009.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 99/154 (64%), Gaps = 6/154 (3%)
Query: 144 YVKNLDDDVTEEILDK----NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK 199
Y++ L ++ EI+ K N+Y+KNI+D+VD+ L++ F++ G I+SVKIMR ++GISK
Sbjct: 38 YLQLLHEEKRNEIITKSNGSNVYIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISK 97
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTN 259
GFGFVC+S PDEA A++++ G++F+ KPLYVAIAQ K +R + L +A+ +A T
Sbjct: 98 GFGFVCYSTPDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLEQRFAELA-TMAGTA 156
Query: 260 FPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPP 293
PV PT Y + + F G GF PP
Sbjct: 157 SPVIPTGYPHVYFAHPSTHFPQGPSR-QGFMYPP 189
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N++ +D+ L + F++FG+I S K++ G SKG+GFV YST + A A+ +
Sbjct: 60 YIKNISDEVDDDTLRERFAEFGNITSVKIMRDDKGISKGFGFVCYSTPDEAKCAVSSMRG 119
Query: 117 ATVEGMELY 125
G LY
Sbjct: 120 VMFYGKPLY 128
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 142/303 (46%), Gaps = 44/303 (14%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
++LA T + ++F+ FG I S + +GKSKG+GFV + E+A A+E+L
Sbjct: 255 IDLAYT--EKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKE 312
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIE 174
+ G ++Y GR Q+ K + V E L K NL+VKN+++ +D +
Sbjct: 313 INGQKIYV-----GRAQKKRERTEELKKQYEA-VRLEKLSKYQGVNLFVKNLDEQIDSEK 366
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L++ F G I+S K+M + G SKGFGFVCFS P+EA +AI +N + + KPLYVA+A
Sbjct: 367 LEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALA 426
Query: 235 QTKRERTSYL----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM 284
Q K R S L R+ A GL P P Y + G
Sbjct: 427 QRKDVRRSQLEQQIQARNQMRMQNAAAAGGLPGQFMP--PMFYG-----------QQGFF 473
Query: 285 IPNGFSSPP---PSPLFLTRA-GQAAANNLTNGNQRAAANNSMLAV-ASPDERKDILGQG 339
PNG + P P+P + R GQ R N + V P + +D GQ
Sbjct: 474 PPNGRGNAPFPGPNPQMMMRGRGQPFPEQWP----RPGPNGQPVPVYGMPPQFQDFNGQN 529
Query: 340 LYP 342
+ P
Sbjct: 530 MRP 532
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 101/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV G+SK +GFV Y T+E+A AIE +
Sbjct: 158 FIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNG 217
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ E+Y + R +++E A++ N+YVKN+D TE+
Sbjct: 218 MLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEK--------------- 262
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E ++ F+ G I+S+ + + G SKGFGFV F + A +A+ LN + + +Y
Sbjct: 263 ---EFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIY 319
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ KRERT L+ Y
Sbjct: 320 VGRAQKKRERTEELKKQY 337
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV---VSQDGKSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 70 YVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSK--KSLGYAYVNYHKLEDGEKAIEE 127
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L VEG R RI S D D N+++KN++ +D
Sbjct: 128 LNYTPVEG--------RPCRIMWSQR----------DPSARRSGDGNIFIKNLHPAIDNK 169
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I SVK+ + G SK FGFV + + A AI ++NG+L + + +YV
Sbjct: 170 ALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGK 229
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S L M A
Sbjct: 230 HVSKKDRESKLEEMKA 245
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 41/69 (59%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ KL + F FG I SSKV+V GKSKG+GFV +ST E A AI ++
Sbjct: 354 FVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQ 413
Query: 117 ATVEGMELY 125
V G LY
Sbjct: 414 RMVNGKPLY 422
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 53/236 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F KFG+I S+ + Q+GKS+G+GFV +ST +SA A++++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMND 295
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
++G +LY GR Q+ K + E+ NLYVKN+ DDVD+
Sbjct: 296 KEIKGQKLYV-----GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 350
Query: 174 ELKQYFSQCGIISSVKIMRTN--------------------------------------- 194
+L++ FS G I+S K+MR
Sbjct: 351 KLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAK 410
Query: 195 ------RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S L
Sbjct: 411 KTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQL 466
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 143 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 199
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KNI+ +V +
Sbjct: 200 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDE 247
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R G S+GFGFV FS D A A++ +N + LYV
Sbjct: 248 EFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGR 307
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 308 AQKKHEREEELRKQY 322
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 12 DSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTF-IPFTVNL-----ASTI 65
D+ + GTP ++T+ + + +++ S ATP+ P + +L ++
Sbjct: 12 DNTVNGTP--------EATNPAATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSV 63
Query: 66 DNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
L+++FS G + S + V +D +S GY +V Y+ A+E L ++G
Sbjct: 64 TEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG- 120
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+ RI S D + N+++KN++ +D L F+
Sbjct: 121 -------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 163
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V +K++R S
Sbjct: 164 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 223
Query: 243 YLRIMYA 249
M A
Sbjct: 224 KFEEMKA 230
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 103/192 (53%), Gaps = 10/192 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N++ + + F K + S + +GK +G+GFV Y T A A+E+L
Sbjct: 225 YIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEEL-- 282
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G+E + L GR Q+ + + E+ ++K NL++KN++D +D+
Sbjct: 283 ---NGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEK-MEKYQGVNLFIKNLDDSIDD 338
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+SVK+M T G SKGFGFVCFS P+EA +AI N + KPLYVA
Sbjct: 339 ERLREEFSPFGTITSVKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 398
Query: 233 IAQTKRERTSYL 244
IAQ K R S L
Sbjct: 399 IAQRKDVRRSQL 410
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 107/201 (53%), Gaps = 25/201 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL + IDN LH FS FG+I S K+ + G SKG+GFV + + E+A AI+ +
Sbjct: 131 FIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAIN 190
Query: 116 AATVEGMELY-APSL----RAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ G E+Y AP + R +++E+ A+F N+Y+KN+ + E+
Sbjct: 191 GMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNVYIKNISLETPEQ-------------- 236
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E +++F + ++SV + + + G +GFGFV + A +A+ LNG+ FH + L
Sbjct: 237 ----EFEEFFKKVAPVTSVHLEKDSEGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQQL 292
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
+V AQ K ER LR Y +
Sbjct: 293 HVGRAQKKYERQQELRRQYEQ 313
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 24/200 (12%)
Query: 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQE 105
+ T T + L T+ L+ IFS G + S + V +D +K GY +V ++ E
Sbjct: 35 VETSTASLYVGELDPTVSEALLYDIFSPIGSV--SSIRVCRDAITKTSLGYAYVNFNDYE 92
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
+ AIEKL ++G + RI S +L K N+++KN
Sbjct: 93 AGRQAIEKLNYTPIKG--------QPCRIMWSQRDPSLRKKG----------SGNIFIKN 134
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILF 224
++ D+D L FS G I S KI G SKGFGFV F + + A AI+ +NG+L
Sbjct: 135 LHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGMLL 194
Query: 225 HQKPLYVAIAQTKRERTSYL 244
+ + +YVA ++++R S L
Sbjct: 195 NGQEVYVAPHVSRKDRQSKL 214
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 11/206 (5%)
Query: 41 ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQ 100
AS+DV + + + N + D L Q K+G+I S +++ +DGK + + FV
Sbjct: 203 ASVDVFTNL-------YVRNFPVSWDEEALKQFLDKYGEITS--MMIKEDGKGRKFAFVN 253
Query: 101 YSTQESALNAIEKLYAATVE-GMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK 159
++ E A A+E L +E G E + + A + Y+ LD + +
Sbjct: 254 FAEPEMAKEAVEALNGTKLEEGSEPLLVCPHQDKAKRQAFLKSQYISGLDGSIASKA-SS 312
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLY+KN++D + L++ F Q G I+S KIMR G+S+GFGFVCFS P+EA +AI +
Sbjct: 313 NLYIKNLDDSFTDESLQELFGQFGSITSCKIMRDASGVSRGFGFVCFSRPEEATKAIAGM 372
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
+ + KPLYV +A+ K +R S L+
Sbjct: 373 HLKIVKGKPLYVGLAEKKEQRLSRLQ 398
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 99/194 (51%), Gaps = 19/194 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID + FS FG I S KV + ++G SKGYGFV Y T+ESA AIEK
Sbjct: 122 FVKNLDRSIDTKAFYDTFSHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEK--- 178
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM + G+ E + F +K D D + NLYV+N DE LK
Sbjct: 179 --VNGMVI------GGKKVEVSPF----IKKQDRDPASVDVFTNLYVRNFPVSWDEEALK 226
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ--KPLYVAIA 234
Q+ + G I+S+ I +G + F FV F+ P+ A A+ LNG + +PL V
Sbjct: 227 QFLDKYGEITSMMIKEDGKG--RKFAFVNFAEPEMAKEAVEALNGTKLEEGSEPLLVCPH 284
Query: 235 QTKRERTSYLRIMY 248
Q K +R ++L+ Y
Sbjct: 285 QDKAKRQAFLKSQY 298
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L+++F+ G + S +V S KS GY +V Y + + A A+E L
Sbjct: 34 YVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAALESLN 93
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G RI S D + N++VKN++ +D
Sbjct: 94 YIDIKG--------HPTRIMWSNK----------DPTLRKSGAGNIFVKNLDRSIDTKAF 135
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G+SKG+GFV + + A AI +NG++ K + V+
Sbjct: 136 YDTFSHFGPILSCKVAMDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSPFI 195
Query: 236 TKRER 240
K++R
Sbjct: 196 KKQDR 200
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 118/236 (50%), Gaps = 52/236 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+++ + + ++F K+GDI SS + Q+GKS+G+GFV ++T ESA A+E+L+
Sbjct: 244 YVKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHG 303
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN++DDVD+
Sbjct: 304 KDFRGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 358
Query: 174 ELKQYFSQCGIISSVKIMR----------------------------------------- 192
+L+Q F++ G I+S K+MR
Sbjct: 359 KLRQMFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKADK 418
Query: 193 ---TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G SKGFGFVCFSNPD+A +A+ +N + + KPLYVA+AQ K R S L
Sbjct: 419 KGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLE 474
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 100/193 (51%), Gaps = 14/193 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+
Sbjct: 151 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAHQAIKH--- 207
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
V GM L + G +++ K+ E + N+YVKNI+ + + E
Sbjct: 208 --VNGMLLNEKKVYVG--------HHIPKKDRQSKFEEMKANFTNIYVKNISTEASDDEF 257
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F + G I+S + R G S+GFGFV F+ + A +A+ L+G F + LYV AQ
Sbjct: 258 RELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQ 317
Query: 236 TKRERTSYLRIMY 248
K ER LR Y
Sbjct: 318 KKHEREEELRKSY 330
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y++ A+E+
Sbjct: 63 YVGELDPSVTEAMLFELFSQIGAVAS--IRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 120
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 121 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 162
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 163 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGH 222
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 223 HIPKKDRQSKFEEMKA 238
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 41/146 (28%)
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
AA E PS A Q SAS LYV LD VTE +L EL
Sbjct: 38 AAGSEDASAPTPSSAAPHPQNSAS---LYVGELDPSVTEAML---------------FEL 79
Query: 176 KQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
FSQ G ++S+++ R T R + G+ +V +++ + +A+ LN L +P
Sbjct: 80 ---FSQIGAVASIRVCRDAVTRRSL--GYAYVNYNSTADGEKALEELNYTLIKGRP---- 130
Query: 233 IAQTKRERTSYLRIMYAKQGPGLAST 258
RIM++++ P L T
Sbjct: 131 -----------CRIMWSQRDPALRKT 145
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 136/307 (44%), Gaps = 75/307 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F KFG++ SS + Q+GK++G+GFV ++T E+A A++ L
Sbjct: 245 YVKNINHEVTDDEFRELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVDDLNG 304
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ ++ + E+ NLY+KN+ DDVD+
Sbjct: 305 KDFRGQDLYV-----GRAQKKHEREEELRRSYEAARLEKANKYQGVNLYIKNLGDDVDDE 359
Query: 174 ELKQYFSQCGIISSVKIMRTNR-------------------------------------- 195
+L+ FS+ G I+S K+MR +
Sbjct: 360 KLRAMFSEYGPITSAKVMRDSLIEGEEKDEKDKENKKEGETKEEEEKEGSAEKKTEKKGD 419
Query: 196 ---GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS---------- 242
G SKGFGFVCFSNPD+A +A+ +N + KPLYVA+AQ K R S
Sbjct: 420 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQARN 479
Query: 243 YLRIMYAKQGPGLASTNFPVHPTLYQRALQVY--QAPGFRHGGMIPNGFSSPPPS---PL 297
LR+ A G+ P Y +A Y Q PGF P G P P P+
Sbjct: 480 QLRMQQAAAQAGM--------PQQYMQAPVYYAGQQPGFMPA---PGGRGVPFPQGGIPV 528
Query: 298 FLTRAGQ 304
R GQ
Sbjct: 529 QGGRPGQ 535
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 102/193 (52%), Gaps = 14/193 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 152 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKH--- 208
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
V GM L + G +++ K+ E + N+YVKNIN +V + E
Sbjct: 209 --VNGMLLNEKKVYVG--------HHIPKKDRQSKFEEMKANFTNVYVKNINHEVTDDEF 258
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F + G ++S + R G ++GFGFV F+ + A +A++ LNG F + LYV AQ
Sbjct: 259 RELFEKFGEVTSSSLARDQEGKTRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQ 318
Query: 236 TKRERTSYLRIMY 248
K ER LR Y
Sbjct: 319 KKHEREEELRRSY 331
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+T A+E+
Sbjct: 64 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 122 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGAGNIFIKNLDAAIDNK 163
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 164 ALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 223
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 224 HIPKKDRQSKFEEMKA 239
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 106/191 (55%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + F+K G I S+ + +GK +G+GFV Y A A+E+L
Sbjct: 226 YVKNIHPDTGDEEFEEFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNE 285
Query: 117 ATVEGMELYA--PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+G L+ + R+QE + ++ L E+ NL+VKN++D +D+
Sbjct: 286 TDFKGQTLHVGRAQKKHERLQELKKQYEAFRLEKL-----EKYQGVNLFVKNLDDTIDDQ 340
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+SVK+MR+ G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 341 KLEEEFAPYGTITSVKVMRSENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 400
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 401 AQRKDVRRSQL 411
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 12/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG+I S K+ + G S+G+GFV + E+A AI+ +
Sbjct: 133 FIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKEAIDAING 192
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G E+Y + + ++S LD+ N+YVKNI+ D + E +
Sbjct: 193 MLLNGQEVYVAQHVSKKDRQS---------KLDEAKANFT---NVYVKNIHPDTGDEEFE 240
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
++F++ G I+S + + N G +GFGFV + N ++A +A+ LN F + L+V AQ
Sbjct: 241 EFFTKVGPITSAHLEKDNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHVGRAQK 300
Query: 237 KRERTSYLRIMY 248
K ER L+ Y
Sbjct: 301 KHERLQELKKQY 312
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 23/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ L ++ L+ IFS G + S + V +D +K GY +V ++ E+ AIEK
Sbjct: 45 YVGELDPSVSEALLYDIFSPIGSV--SSIRVCRDAITKTSLGYAYVNFNDHEAGKTAIEK 102
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L A ++G+ RI S ++ K N+++KN++ D+D
Sbjct: 103 LNYAPIKGVPC--------RIMWSQRDPSMRKKG----------SGNIFIKNLHPDIDNK 144
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G S+GFGFV F + + A AI+ +NG+L + + +YVA
Sbjct: 145 ALHDTFSVFGNILSCKIATDEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQ 204
Query: 234 AQTKRERTSYL 244
+K++R S L
Sbjct: 205 HVSKKDRQSKL 215
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 102/181 (56%), Gaps = 3/181 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 305 YVKNFGEDMDDERLQGVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 364
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ RA + +E + + L D LY+KN++D VD+ L+
Sbjct: 365 KDINGQLVFVG--RAQKKEERQAELKQVFEELKRDGARRCQGVKLYIKNLDDTVDDDRLR 422
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS VK+M G KGFG VCFS+P+EA +A+ +NG + KPL +A+A+
Sbjct: 423 RAFSSFGSISRVKVM-EEEGQRKGFGLVCFSSPEEAAKAMTQMNGRVLGSKPLNIALAKR 481
Query: 237 K 237
+
Sbjct: 482 Q 482
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL ++DN L++ FS FG I SSKV+ S D SKGY FV + +Q +A AI+++ +
Sbjct: 216 NLDRSVDNKTLYEHFSGFGRILSSKVM-SDDQGSKGYAFVHFQSQSAADCAIQEMNGKVI 274
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
++ R+ R +E+ ++ + T N+YVKN +D+D+ L+ F
Sbjct: 275 RDRQVLVAPFRSRRDREAE------LRTRTSEFT------NVYVKNFGEDMDDERLQGVF 322
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ K E
Sbjct: 323 SKYGRTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEE 382
Query: 240 RTSYLRIMY 248
R + L+ ++
Sbjct: 383 RQAELKQVF 391
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 95 GYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE 154
GY +V + A A++ + VEG + + + N+ +KNLD V
Sbjct: 164 GYAYVNFLRPADAQKALDTMNFDAVEGKPIRLMWSQRDACLRKSGVGNVIIKNLDRSVD- 222
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
+K LY ++FS G I S K+M ++G SKG+ FV F + A+
Sbjct: 223 ---NKTLY--------------EHFSGFGRILSSKVMSDDQG-SKGYAFVHFQSQSAADC 264
Query: 215 AINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
AI +NG + + + VA +++R+R + LR
Sbjct: 265 AIQEMNGKVIRDRQVLVAPFRSRRDREAELR 295
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 103/195 (52%), Gaps = 19/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ L+++FS FG I S KV G+SKGYGFVQY T+ESA +AI +L
Sbjct: 128 FVKNLEPSIDSKNLYEMFSSFGTILSCKVATDSAGQSKGYGFVQYETEESAQDAINRLNG 187
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
E++ L R F N+Y+KNL + +++ +L+
Sbjct: 188 MLANDREMFV-GLHMRRRNREVKFTNVYIKNLPTEFSDD------------------DLR 228
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
Q F+ G I+S +MR G+SK FGFV F P+ A A+ NG + + K LYV AQ
Sbjct: 229 QEFAPFGEITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQK 288
Query: 237 KRERTSYLRIMYAKQ 251
K ER + L+ + ++
Sbjct: 289 KAERQAELKTKFKQE 303
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/350 (26%), Positives = 154/350 (44%), Gaps = 68/350 (19%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + L Q F+ FG+I S+ V+ +G SK +GFV + E AL A++K
Sbjct: 214 YIKNLPTEFSDDDLRQEFAPFGEITSAVVMRDVNGVSKCFGFVNFEKPEFALEAVKKANG 273
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ LY GR Q+ A + ++ +DK NLY+KNI+D +++
Sbjct: 274 KVINDKTLYV-----GRAQKKAERQAELKTKFKQEDRDKKVDKPNGINLYLKNIDDSIND 328
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK F + G ++S K+M +G SKG GFV F+ + + AIN +NG + +KPLYV
Sbjct: 329 EGLKILFEEFGQVTSCKVMVDAQGRSKGSGFVLFATAEAGHSAINGMNGRIVGKKPLYVG 388
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNF-------------------------------- 260
+AQ K ER + L +A++ +A++ +
Sbjct: 389 LAQPKEERRAMLMAHFAQRNLAMAASPYAGPQQVYFGHPAPGQIPPQAAVFGFPQHFVPA 448
Query: 261 --PVHPTLYQRALQVYQAPGFRHGG--------------------MIPNGFSSPPPSPLF 298
PV P + +Q + P R GG +PN P+ L
Sbjct: 449 MGPVSPVMMPHNMQRSRYPRQRTGGPAAYRQQQAMIHANANHNIRYMPNARHGAYPAML- 507
Query: 299 LTRAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKKLK 348
Q + + + ++ + +A A P +++ ILG LY LV++L+
Sbjct: 508 ----PQGFPSAMVSQQHDGSSITTAVASAEPADQQQILGNKLYALVEQLE 553
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 37/207 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +LA ++D +LH +FS+ + S +V +VS G S GYG+V + +++ A A+E
Sbjct: 40 YVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVS--GVSLGYGYVNFYSRQEATCALEA 97
Query: 114 LYAATVEGMELYA------PSLR-AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
L A + G + PSLR +GR NL+VKN+
Sbjct: 98 LNFAPLSGKHIRVMFSNRDPSLRKSGRA-------------------------NLFVKNL 132
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
+D L + FS G I S K+ + G SKG+GFV + + A AIN LNG+L +
Sbjct: 133 EPSIDSKNLYEMFSSFGTILSCKVATDSAGQSKGYGFVQYETEESAQDAINRLNGMLAND 192
Query: 227 KPLYVAIAQTKRERTSYLRIMYAKQGP 253
+ ++V + +R R +Y K P
Sbjct: 193 REMFVGLHMRRRNREVKFTNVYIKNLP 219
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINT 218
+LYV ++ + VDE +L FSQ + SV++ R G+S G+G+V F + EA A+
Sbjct: 38 SLYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCALEA 97
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
LN K ++R+M++ + P L
Sbjct: 98 LNFAPLSGK---------------HIRVMFSNRDPSL 119
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 100/199 (50%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+ +L+ FS FG I S K+V+ ++G+SKGYGFV + +E A AIEK+
Sbjct: 104 FIKNLDKSIEQKELYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINN 163
Query: 117 ATVEGMELYA----PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +Y P FNNLYVKN + E
Sbjct: 164 MIIRDRVVYVGKFIPKTERKSQARKVKFNNLYVKNFPPETDNE----------------- 206
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS+ G I S +M+ N G SKGFGFVC+ +PD A A+ T++G + LY A
Sbjct: 207 -KLKEMFSEFGEIKSACVMKDNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCA 265
Query: 233 IAQTKRERTSYLRIMYAKQ 251
AQ K ER L+ KQ
Sbjct: 266 RAQRKEERQEELKQKIEKQ 284
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + L FS+ G + S++V +S GYG+V + + A A+E L
Sbjct: 16 YVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEVLN 75
Query: 116 AATVEGMELYAPSL-RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
Y P + R RI S D + N+++KN++ +++ E
Sbjct: 76 ---------YEPLMGRPIRIMWSQR----------DPSLRKSGKGNIFIKNLDKSIEQKE 116
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S KI+ G SKG+GFV F + A RAI +N ++ + +YV
Sbjct: 117 LYDTFSFFGRILSCKIVMDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKF 176
Query: 235 QTKRERTSYLR 245
K ER S R
Sbjct: 177 IPKTERKSQAR 187
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 20/106 (18%)
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEA 212
+++ +LYV +++ V + L+ FS+ G + S ++ R T + + G+G+V F +P A
Sbjct: 10 LMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSL--GYGYVNFEDPKHA 67
Query: 213 NRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
+A+ LN +P +RIM++++ P L +
Sbjct: 68 EQALEVLNYEPLMGRP---------------IRIMWSQRDPSLRKS 98
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 55/238 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F KFG+I S+ + Q+GKS+G+GFV +ST +SA A++++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMND 295
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
++G +LY GR Q+ K + E+ NLYVKN+ DDVD+
Sbjct: 296 KEIKGQKLYV-----GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 350
Query: 174 ELKQYFSQCGIISSVKIMRTN--------------------------------------- 194
+L++ FS G I+S K+MR
Sbjct: 351 KLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEE 410
Query: 195 --------RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S L
Sbjct: 411 PKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQL 468
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 143 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 199
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KNI+ +V +
Sbjct: 200 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDE 247
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R G S+GFGFV FS D A A++ +N + LYV
Sbjct: 248 EFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGR 307
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 308 AQKKHEREEELRKQY 322
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 37/247 (14%)
Query: 12 DSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIP------FTVNLASTI 65
D+ + GTP ++T+ + + +++ S TP+ + L ++
Sbjct: 12 DNTVNGTP--------EATNAAATSAPEVTAVESASPSTTPSASQPHSASLYVGELDPSV 63
Query: 66 DNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
L+++FS G + S + V +D +S GY +V Y+ A+E L ++G
Sbjct: 64 TEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG- 120
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+ RI S D + N+++KN++ +D L F+
Sbjct: 121 -------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 163
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V +K++R S
Sbjct: 164 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 223
Query: 243 YLRIMYA 249
M A
Sbjct: 224 KFEEMKA 230
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 118/235 (50%), Gaps = 52/235 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+++ + + ++F K+GDI SS + Q+GKS+G+GFV ++T ESA A+E+L+
Sbjct: 245 YIKNISTEASDDEFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHG 304
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN++DDVD+
Sbjct: 305 KDFRGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDE 359
Query: 174 ELKQYFSQCGIISSVKIMR----------------------------------------- 192
+L+Q F++ G I+S K+MR
Sbjct: 360 KLRQMFAEFGPITSAKVMRDAPSDGSDDDKEKEEDNEKEPEAKEEAKETEEEDADKKADK 419
Query: 193 ---TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G SKGFGFVCFSNPD+A +A+ +N + + KPLYVA+AQ K R S L
Sbjct: 420 KGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQL 474
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+
Sbjct: 152 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAHQAIKH--- 208
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + G ++ D E + N+Y+KNI+ + +
Sbjct: 209 --VNGMLLNEKKVYVGH----------HIPKKDRQSKFEEMKANFTNIYIKNISTEASDD 256
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R G S+GFGFV F+ + A +A+ L+G F + LYV
Sbjct: 257 EFRELFEKYGDITSSSLARDQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGR 316
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 317 AQKKHEREEELRKSY 331
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y++ A+E+
Sbjct: 64 YVGELDPSVTEAMLFELFSQIGAVAS--IRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 121
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 122 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 163
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 164 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGH 223
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 224 HIPKKDRQSKFEEMKA 239
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V +++ + +A+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSL--GYAYVNYNSTADGEKAL 119
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 120 EELNYTLIKGRP---------------CRIMWSQRDPALRKT 146
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 114/209 (54%), Gaps = 12/209 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + L Q F+ FG+I S+ V+ DG SK +GFV + E A+ A+EK
Sbjct: 179 YIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANG 238
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ LY RA + +E A + + D+ V DK NLY+KNI+D ++
Sbjct: 239 KAIGDKTLYVG--RAQKKEERKAELKTRFGRGRDNKV-----DKPNGINLYLKNIDDGIN 291
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ LK+ F + G ++S K+M RG SKG GFV F+ + RAIN +NG + +KPLYV
Sbjct: 292 DEGLKKLFEEFGQVASCKVMVDARGRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYV 351
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTNF 260
+AQ K ER + L +A++ +A++ +
Sbjct: 352 GLAQPKEERKAMLMAHFAQRNLAMAASQY 380
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 96/194 (49%), Gaps = 19/194 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ L++IFS FG I S KV G+SKGYGFVQY T+ESA AI L
Sbjct: 93 FVKNLEPNIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNG 152
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++ L R F N+Y+KNL + +E+ +L+
Sbjct: 153 MLANNRKMFV-GLHMRRRDREVKFTNVYIKNLPTEFSED------------------DLR 193
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
Q F+ G I+S +MR G SK FGFV F P+ A A+ NG K LYV AQ
Sbjct: 194 QEFAPFGEITSAVVMRDADGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQK 253
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 254 KEERKAELKTRFGR 267
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 33/205 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +LA T+D +LH +FS+ + + +V G S GYG+V + +++ A A+E L
Sbjct: 5 YVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEALN 64
Query: 116 AATVEGMELYA------PSLR-AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+ G + PSLR +GR NL+VKN+
Sbjct: 65 FTPLIGKYIRVMFSNRDPSLRKSGRA-------------------------NLFVKNLEP 99
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++D L + FS G I S K+ + G SKG+GFV + + A AIN LNG+L + +
Sbjct: 100 NIDSKNLYEIFSSFGAILSCKVATDSAGQSKGYGFVQYETEESAEAAINGLNGMLANNRK 159
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGP 253
++V + +R+R +Y K P
Sbjct: 160 MFVGLHMRRRDREVKFTNVYIKNLP 184
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 16/97 (16%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINT 218
+LYV ++ + VDE +L FSQ +++V++ R G+S G+G+V F + EA RA+
Sbjct: 3 SLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEA 62
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
LN PL Y+R+M++ + P L
Sbjct: 63 LNFT-----PLI----------GKYIRVMFSNRDPSL 84
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 470 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 529
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L ++ LYVKN++D +D+ +L+
Sbjct: 530 RDINGQLIFVARAQK-KVERQAELKQMF-EQLKNERIRGCQVVKLYVKNLDDTIDDEKLR 587
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 588 KEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQ 645
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 378 FIKNLDKSIDNKTLYEHFSAFGRILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 436
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G +++ ++ + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 437 KLLQGCKVFVGRFKSRQDREAE------LRSKASEFT------NVYIKNFGGDMDDERLK 484
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++VA AQ
Sbjct: 485 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQK 544
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ M+ +
Sbjct: 545 KVERQAELKQMFEQ 558
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 376 NVFIKNLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 434
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V +++++R + LR
Sbjct: 435 NGKLLQGCKVFVGRFKSRQDREAELR 460
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 106/192 (55%), Gaps = 8/192 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NLA + +L ++FS +G I SS + +GKSKG+GFV + A+ A+++L
Sbjct: 235 FVKNLAPEYTDQELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAVDELNN 294
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ G +Y GR Q+ + + E++ NL++KN++D +D
Sbjct: 295 KEIAGQPIYV-----GRAQKKRERMEELRRQYEATKLEKLSKYQGVNLFIKNLDDTIDSE 349
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G I+S ++M +G SKGFGFVCFS+P+EA +AI +N + KPLYVA+
Sbjct: 350 KLENEFKPFGNITSARVMVDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYVAL 409
Query: 234 AQTKRERTSYLR 245
AQ K R S L
Sbjct: 410 AQRKDVRRSQLE 421
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 101/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV + G SK +GFV Y T E+A AIE +
Sbjct: 142 FIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGNSKCFGFVHYETAEAAEAAIENVNG 201
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ E++ + + +ES A+F N++VKNL + T++
Sbjct: 202 MLLNDREVFVGKHVSKKDRESKFEEMKANFTNVFVKNLAPEYTDQ--------------- 246
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
ELK+ FS G I+S + + G SKGFGFV F N ++A +A++ LN +P+Y
Sbjct: 247 ---ELKELFSAYGPITSSYLEKDLEGKSKGFGFVNFDNHNDAVKAVDELNNKEIAGQPIY 303
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ KRER LR Y
Sbjct: 304 VGRAQKKRERMEELRRQY 321
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++++ L +IFS G Q S + V +D KS GY +V + + AIE
Sbjct: 54 YVGELNTSVNEALLFEIFSPIG--QVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIED 111
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + +EG R RI S D + N+++KN++ +D
Sbjct: 112 LNYSLIEG--------RPCRIMWSQR----------DPSLRRNGEGNIFIKNLHPAIDNK 153
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ G SK FGFV + + A AI +NG+L + + ++V
Sbjct: 154 ALHDTFSAFGRILSCKVATDELGNSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 213
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 214 HVSKKDRESKFEEMKA 229
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 26/121 (21%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDEANRAIN 217
LYV +N V+E L + FS G +SS+++ R ++K G+ +V F D+ +AI
Sbjct: 53 LYVGELNTSVNEALLFEIFSPIGQVSSIRVCRD--AVTKKSLGYAYVNFVKFDDGEQAIE 110
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFP------VHPTLYQRAL 271
LN L +P RIM++++ P L +HP + +AL
Sbjct: 111 DLNYSLIEGRP---------------CRIMWSQRDPSLRRNGEGNIFIKNLHPAIDNKAL 155
Query: 272 Q 272
Sbjct: 156 H 156
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/320 (28%), Positives = 138/320 (43%), Gaps = 91/320 (28%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + + + + ++F ++G + SS + Q+ GKS+G+GF+ ++T ESA A+E+L
Sbjct: 243 YIKNLHADVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELN 302
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
+ + G ELY GR Q+ K+ + E+ + NLY+KN++D+VD+
Sbjct: 303 SREIHGQELYV-----GRAQKKHEREEELRKSYEAARQEKASKYVGVNLYIKNLDDEVDD 357
Query: 173 IELKQYFSQCGIISSVKIMRTNR------------------------------------- 195
+L++ F+ G I+S K+MR
Sbjct: 358 EKLRELFAPYGPITSAKVMRETASESDEEGKETKETEEVKEVKEEEEKPKVEGAAEGEAD 417
Query: 196 -------------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G SKGFGFVCFSNPD+A +A+ +N + KPLYVAIAQ K R S
Sbjct: 418 ASGEKQAAARPKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYVAIAQKKEVRKS 477
Query: 243 Y----------LRIMYAKQGPGLASTNFPVHPTLY--------------------QRALQ 272
LR+ A GL T + P +Y Q L
Sbjct: 478 QLEASIQARNTLRMQQAAAVAGLPQTY--MQPQVYYPPGQQQAFLPQGGRGMAFPQGGLG 535
Query: 273 VYQAPGFRHGGMIPNGFSSP 292
+ G R G P GF+ P
Sbjct: 536 IPGVQGGRPGQFAPGGFTGP 555
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 100/199 (50%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+ +
Sbjct: 150 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNG 209
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + +E A++ N+Y+KNL DVT++
Sbjct: 210 MLLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVTDD--------------- 254
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E ++ F Q G ++S I R G S+GFGF+ F+ + A +A+ LN H + L
Sbjct: 255 ---EFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESAAKAVEELNSREIHGQEL 311
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 312 YVGRAQKKHEREEELRKSY 330
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y++ A+E+
Sbjct: 62 YVGELDESVTEAMLFELFSQIGPVAS--IRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 119
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++ R RI S D + N+++KN++ +D
Sbjct: 120 LNYTLIKN--------RPCRIMWSQR----------DPALRKTGQGNIFIKNLDAAIDNK 161
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A +AI +NG+L ++K +YV
Sbjct: 162 ALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGH 221
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 222 HIPKKDRQSKFEEMKA 237
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 41/135 (30%)
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIIS 186
PS A Q SAS LYV LD+ VTE +L EL FSQ G ++
Sbjct: 48 PSSAAAHPQASAS---LYVGELDESVTEAML---------------FEL---FSQIGPVA 86
Query: 187 SVKIMR---TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSY 243
S+++ R T R + G+ +V +++ + +A+ LN L +P
Sbjct: 87 SIRVCRDAVTRRSL--GYAYVNYNSTADGEKALEELNYTLIKNRP--------------- 129
Query: 244 LRIMYAKQGPGLAST 258
RIM++++ P L T
Sbjct: 130 CRIMWSQRDPALRKT 144
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 108/183 (59%), Gaps = 11/183 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 193 YIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G L+ GR Q+ A +K + + + E + LY+KN+++ +D+
Sbjct: 253 KDINGQLLFV-----GRAQKKAE-RQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDD 306
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G IS VK+M+ G SKGFG +CFS+P+EA +A+ +NG + KPL +A
Sbjct: 307 EKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSPEEATKAMTEMNGRILGSKPLNIA 365
Query: 233 IAQ 235
+AQ
Sbjct: 366 LAQ 368
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 111/192 (57%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D S+GY FV + Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSRGYAFVHFQNQIAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A ++ L+ + + +E+ ++N ++ T N+Y+KN DD+D+ LK
Sbjct: 160 ALLKDCRLFVGRFKNRKDREAE------LQNKANEFT------NVYIKNFGDDMDDERLK 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+MR + G SKGFGFV F + + A +A+ +NG + + L+V AQ
Sbjct: 208 EVFSKYGKTLSVKVMRDSSGKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQK 267
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 268 KAERQAELKQMF 279
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G S+G+ FV F N A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SRGYAFVHFQNQIAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L L+V + +++R + L+
Sbjct: 158 NGALLKDCRLFVGRFKNRKDREAELQ 183
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 10/199 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ ++ +L ++F K+G I S KV+ DG S+G+GFV + + A A+ +L+
Sbjct: 186 YIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHG 245
Query: 117 A-TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
+ EG Y R Q+ + + E I NLYVKN++D +D+
Sbjct: 246 KKSPEGKTYYV-----NRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDD 300
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I S K+M + G SKGFGFV FS+P+EA +A+ +NG + KPLYV
Sbjct: 301 ERLRREFSAFGTIKSAKVM-MDDGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVT 359
Query: 233 IAQTKRERTSYLRIMYAKQ 251
+AQ K++R ++L Y+++
Sbjct: 360 LAQRKKDRKAHLDSQYSQR 378
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 105/192 (54%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV + G SKGYGFV + T++SA +IEK+
Sbjct: 93 FIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGNSKGYGFVHFETKQSATQSIEKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G +++ R R +E LY N+Y+KNI+++V+E E
Sbjct: 153 MLLNGKKVFVGRFVGRNDREKELGQRAKLYT--------------NVYIKNIDENVNEKE 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYVAI 233
L + F + G I+S K+M + G S+GFGFV F +P EA +A+ L+G + K YV
Sbjct: 199 LFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKTERQQELK 270
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 37/195 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L S + L + FS G I S +V V+++ S GY +V + A A++
Sbjct: 5 YVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRS--SLGYAYVNFQNIADAERALDT 62
Query: 114 LYAATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
+ ++G + PSLR + N+++KN++
Sbjct: 63 MNFDILKGHPMRIMWSQRDPSLRKSGV------------------------GNVFIKNLD 98
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
+D + FS G I S K+ + G SKG+GFV F A ++I +NG+L + K
Sbjct: 99 RSIDNKAMYDTFSAFGNILSCKVAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGK 158
Query: 228 PLYVA--IAQTKRER 240
++V + + RE+
Sbjct: 159 KVFVGRFVGRNDREK 173
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+
Sbjct: 150 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKH--- 206
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN---LYVKNINDDVDEI 173
V GM L E + ++ D E + N +YVKNI DV E
Sbjct: 207 --VNGMLL----------NEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNIAPDVTED 254
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ ++ F + G ++S + R G S+GFGFV F+ + A++A++ LNG FH + LYV
Sbjct: 255 DFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDDLNGKDFHGQDLYVGR 314
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 315 AQKKHEREEELRKSY 329
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 135/298 (45%), Gaps = 66/298 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+A + ++F KFGD+ SS + Q+GKS+G+GFV ++T ESA A++ L
Sbjct: 243 YVKNIAPDVTEDDFRELFEKFGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDDLNG 302
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN++DDVD+
Sbjct: 303 KDFHGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 357
Query: 174 ELKQYFSQCGIISSVKIMR---------------------------------TNRG---- 196
+L+Q FS+ G I+S K+MR T G
Sbjct: 358 KLRQMFSEFGPITSAKVMRETPTEGDEDKKEETQDDKEKENKEEAKEEANEETKEGEEAK 417
Query: 197 --------------ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
SKGFGFVCFSNPD+A +A+ +N + + KPLYVA+AQ K R S
Sbjct: 418 DDKKTEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKS 477
Query: 243 YLR--IMYAKQGPGLASTNFPVHPTLYQRALQ--VYQAPGFRHGGMIPNGFSSPPPSP 296
L I Q L + Q+ +Q VY APG + G M G P P P
Sbjct: 478 QLEASIQARNQ---LRMQQAAAAAGMPQQYMQPPVYFAPGQQPGFMPQGGRGVPFPQP 532
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+ A+E+
Sbjct: 62 YVGELDPSVTEAMLFELFSQIGAVAS--IRVCRDAVTRRSLGYAYVNYNATADGEKALEE 119
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 120 LNYTLIKG--------RPCRIMWSQR----------DPALRKNGQGNVFIKNLDVAIDNK 161
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 162 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 221
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 222 HIPKKDRQSKFEEMKA 237
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 104/191 (54%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + Q+FSK+G I S+ + +GK +G+GF+ + +A A+++L
Sbjct: 222 YVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNE 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ G LY GR Q+ K + E++ NL++KN++D +D+
Sbjct: 282 SDFRGQTLYV-----GRAQKKHERQQELKKQYETARLEKLAKYQGVNLFIKNLDDSIDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK F+ G I+SVK+M+ G S+GFGFVCFS P+EA +AI N L KPLYVAI
Sbjct: 337 KLKDEFAPFGTITSVKVMKDEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAI 396
Query: 234 AQTKRERTSYL 244
AQ K R + L
Sbjct: 397 AQRKEVRRNQL 407
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 16/194 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL IDN LH+ FS FG+I S KV +G S+G+GFV + + A +AIE +
Sbjct: 129 YIKNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNG 188
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK--NLYVKNINDDVDEIE 174
+ E+Y + + ++S EE+ K N+YVKNI+ + + E
Sbjct: 189 MLMNDQEVYVAWHVSKKDRQSK--------------LEEVKAKFTNIYVKNIDLETSQEE 234
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+Q FS+ G I+S + + + G +GFGF+ F + A RA++ LN F + LYV A
Sbjct: 235 FEQLFSKYGKITSAVLEKDSEGKLRGFGFINFEDHSTAARAVDELNESDFRGQTLYVGRA 294
Query: 235 QTKRERTSYLRIMY 248
Q K ER L+ Y
Sbjct: 295 QKKHERQQELKKQY 308
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ L ++ L+ IFS G + S +V S GY +V + E+ AIE+L
Sbjct: 41 YVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQLN 100
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L K N+Y+KN++ +D L
Sbjct: 101 YTLIKG--------KPCRIMWSQRDPSLRKKG----------SGNIYIKNLHPAIDNKSL 142
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S K+ + G+S+GFGFV F N +A AI +NG+L + + +YVA
Sbjct: 143 HETFSTFGNILSCKVATDDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHV 202
Query: 236 TKRERTSYLRIMYAK 250
+K++R S L + AK
Sbjct: 203 SKKDRQSKLEEVKAK 217
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 26/122 (21%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L FS G +SS+++ R TN S G+ +V F + + +AI
Sbjct: 39 SLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITN--TSLGYAYVNFHDHEAGRKAI 96
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL---ASTNFPV---HPTLYQRA 270
LN L KP RIM++++ P L S N + HP + ++
Sbjct: 97 EQLNYTLIKGKP---------------CRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKS 141
Query: 271 LQ 272
L
Sbjct: 142 LH 143
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 103/192 (53%), Gaps = 15/192 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L F++FG I S+KV + G SKGYGFVQ+ T E+A AI+
Sbjct: 123 FIKNLDKAIDNKALLDTFAQFGTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAID---- 178
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GMEL + G Q A D E N+YVKN+++++ + +L+
Sbjct: 179 -NVNGMELNDKQVYVGPFQRRA----------DRSTQGEAKFNNVYVKNLSENLSDEKLR 227
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G ++S IM+ G SKGFGFVCF +P+ A A+ L+G +K V AQ
Sbjct: 228 EKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVVCRAQK 287
Query: 237 KRERTSYLRIMY 248
K ER + L+ +
Sbjct: 288 KAEREAELKAKF 299
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 106/183 (57%), Gaps = 2/183 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ + + KL + F++ G + S ++ ++GKSKG+GFV + + E A +A+E L
Sbjct: 213 YVKNLSENLSDEKLREKFAEHGAVTSCVIMKDEEGKSKGFGFVCFESPEGAASAVENLDG 272
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T + E RA + E + + + E++ NLY+KN+ + D+ +L+
Sbjct: 273 YTED--EKTWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYIKNLEEGTDDEKLR 330
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G I+S ++MR G S+G FV FS+PDEA RA+ +NG + KPLYVA+AQ
Sbjct: 331 ELFNEFGTITSCRVMRDASGASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQR 390
Query: 237 KRE 239
K E
Sbjct: 391 KEE 393
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 23/189 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ +L +++ +L++ FS G + S + V +D +S GY +V + + A +AI+
Sbjct: 35 YVGDLETSVTEAQLYEKFSSIGPVVS--IRVCRDLITRRSLGYAYVNFQSSSDAAHAIDV 92
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + G + R+ LY + D N+++KN++ +D
Sbjct: 93 LNFQVINGKPI--------RV--------LYSQR--DPAVRRSGVGNIFIKNLDKAIDNK 134
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+Q G I+S K+ + G SKG+GFV F + A AI+ +NG+ + K +YV
Sbjct: 135 ALLDTFAQFGTITSAKVAMDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGP 194
Query: 234 AQTKRERTS 242
Q + +R++
Sbjct: 195 FQRRADRST 203
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 153/353 (43%), Gaps = 77/353 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + I + ++ +KFG+ S + + +GK G+GFV Y + A+ AI+ L
Sbjct: 230 FIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSE 289
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+G +L+A GR ++ + K + E+ L+K NLY+KN++D +D+
Sbjct: 290 TEFKGNKLFA-----GRAKKKYERADELRKQYEASRLEK-LNKYQGVNLYIKNLDDTIDD 343
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L+ F+ G I+S K+M G SKGFGFVC+S+P+EA +A+ +N L KPLYV
Sbjct: 344 DKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVV 403
Query: 233 IAQTKRERTSYLR-----------------------------IMYAKQ----GPGLASTN 259
+AQ K R S L+ + Y Q PG
Sbjct: 404 LAQRKDVRRSQLQQQIQAKNQMRLQQQAAAGGLPGQYMGNPGVFYPGQPGFMPPGRGGMP 463
Query: 260 F-----------------------PVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPP--- 293
F P P +Y Q YQ GF G + G PP
Sbjct: 464 FGANPQMMMRPPMPPQNQFPPRGVPGGPNMYGAPPQGYQQGGFPPQGPMRGG--QPPRSG 521
Query: 294 -PSPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASPDER-KDILGQGLYPLV 344
P P R A +G R A + S +P+E+ K ++G+ LYP V
Sbjct: 522 QPGPQGQFR----GAPRRKDGESRVADSISNALENAPEEQHKQLVGEALYPKV 570
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 16/194 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL IDN LH FS FG I S K+ + G S+G+GFV Y + ESA +AI+ +
Sbjct: 137 YIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNG 196
Query: 117 ATVEGMELY-APSL-RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ +++ P + ++ R+Q N + N+++KN+ ++ E E
Sbjct: 197 MLLNDKKVFVGPHVPKSDRMQSFEEQKNSFT--------------NVFIKNLGTEITEAE 242
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
++ ++ G SSV + + G GFGFV + D A +AI+ L+ F L+ A
Sbjct: 243 FEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRA 302
Query: 235 QTKRERTSYLRIMY 248
+ K ER LR Y
Sbjct: 303 KKKYERADELRKQY 316
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S V V +D +S GY +V + Q + A+E+
Sbjct: 49 YVGELDPSVTEAMLFEIFNPIGPVTS--VRVCRDAITRRSLGYAYVNFHNQADGIRALEE 106
Query: 114 LYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
L Y+P R RI S D + N+Y+KN++ +D
Sbjct: 107 LN---------YSPIKERPCRIMWSQR----------DPALRKTGAGNIYIKNLDPAIDN 147
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L FS G I S KI G S+GFGFV + + + A AI +NG+L + K ++V
Sbjct: 148 KALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVG 207
Query: 233 IAQTKRER 240
K +R
Sbjct: 208 PHVPKSDR 215
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 105/180 (58%), Gaps = 11/180 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N +D+ KL + FS +G I S KV+ GKSKG+GFV + T E+A A++ V
Sbjct: 196 NFGDEMDDEKLKEFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAKRAVD-----IV 250
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE----ILDKNLYVKNINDDVDEIEL 175
G E++ + GR Q+ A +K L + +E + +YVKN+++ +DE +L
Sbjct: 251 NGREIFGQQVFVGRAQKKAE-RQAELKQLFEQRKQERSWRVRGTKIYVKNLDETIDEEKL 309
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I VK+M+ G S+GFG +CFS+P+EA RA+ +NG L KP+ +A+AQ
Sbjct: 310 RKAFSSFGSIIRVKVMQEE-GRSRGFGLICFSSPEEAARAMAEMNGRLLGSKPVNIALAQ 368
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 111/195 (56%), Gaps = 13/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ G S+GYGFV + Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSVFGKILSSKVMCDDQG-SRGYGFVHFQNQAAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ L+ + R +E+ ++N + T N+Y+KN D++D+ +LK
Sbjct: 160 VLLKDFRLFVGPFKNRRDREAE------LQNKASEFT------NIYIKNFGDEMDDEKLK 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
++FS G I SVK+M + G SKGFGFV F + A RA++ +NG + ++V AQ
Sbjct: 208 EFFSHYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQK 267
Query: 237 KRERTSYLRIMYAKQ 251
K ER + L+ ++ ++
Sbjct: 268 KAERQAELKQLFEQR 282
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 21/154 (13%)
Query: 93 SKGYGFVQYSTQESALNAIEKLYAATVEGMEL-YAPSLRAGRIQESASFNNLYVKNLDDD 151
S GY +V + A A++ + ++G + S R +++S N+++KNLD
Sbjct: 50 SLGYAYVNFLHVADAQRALDTMNFDVIQGQSIRLMWSQRDAYLRKSG-IGNVFIKNLD-- 106
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDE 211
+ I +K LY ++FS G I S K+M ++G S+G+GFV F N
Sbjct: 107 --KSIDNKTLY--------------EHFSVFGKILSSKVMCDDQG-SRGYGFVHFQNQAA 149
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
A+RAI +NG+L L+V + +R+R + L+
Sbjct: 150 ADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQ 183
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114
+ NL TID KL + FS FG I K V+ ++G+S+G+G + +S+ E A A+ ++
Sbjct: 296 YVKNLDETIDEEKLRKAFSSFGSIIRVK-VMQEEGRSRGFGLICFSSPEEAARAMAEM 352
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 102/200 (51%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG++ S KV + G+SKGYGFV Y T E+A AI+ +
Sbjct: 135 FIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNG 194
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y + R +++E A F N+YVKN D +VT
Sbjct: 195 MLLNDKKVYVGYHISRKERQSKLEEMKAQFTNIYVKNFDPEVT----------------- 237
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E E F Q G ++S I R + G S+GFGFV F DEA +A+ L+ + F K L+
Sbjct: 238 -EEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVEGLHDLDFKGKKLF 296
Query: 231 VAIAQTKRERTSYLRIMYAK 250
V+ AQ K ER LR Y +
Sbjct: 297 VSRAQKKAEREQELRQSYEQ 316
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 107/198 (54%), Gaps = 8/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + +F +FG + S+ + +G+S+G+GFV + + A A+E L+
Sbjct: 228 YVKNFDPEVTEEEFMALFQQFGSVTSAVIQRDDEGRSRGFGFVNFEVHDEAQKAVEGLHD 287
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
+G +L+ R Q+ A ++ + E++ NLY+KN+ DD+D+
Sbjct: 288 LDFKGKKLFV-----SRAQKKAEREQELRQSYEQAKMEKMSKFQGVNLYIKNLEDDLDDD 342
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ F G I+S K+MR +G SKGFGFVCFS+PDEA +A+ +N + KPLYV++
Sbjct: 343 RLRTEFEPFGSITSAKVMRDEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSL 402
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ + R L A++
Sbjct: 403 AQRRDVRRQQLESQIAQR 420
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L T+ L +IF+ G + S + V +D +S GY +V Y A+E+
Sbjct: 47 YVGELDPTVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADGERALEQ 104
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++++G RA RI S D + N+++KN+++ +D
Sbjct: 105 LNYSSIKG--------RACRIMWSQR----------DPALRKTGQGNIFIKNLDEQIDNK 146
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G + S K+ G SKG+GFV + + A AI +NG+L + K +YV
Sbjct: 147 ALHDTFAAFGNVLSCKVATDEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGY 206
Query: 234 AQTKRERTSYLRIMYAK 250
+++ER S L M A+
Sbjct: 207 HISRKERQSKLEEMKAQ 223
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 125/234 (53%), Gaps = 21/234 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ ++ +L ++F K+G I S KV+ DG S+G+GFV + + A A+ +L+
Sbjct: 500 YIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAVTELHG 559
Query: 117 A-TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
+ EG Y R Q+ + + E I NLYVKN++D +D+
Sbjct: 560 KKSPEGKTYYV-----NRAQKKTERQQELKRKFEQYKIERINRYQGVNLYVKNLDDTIDD 614
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I S K+M + G SKGFGFV FS+P+EA +A+ +NG + KPLYV
Sbjct: 615 ERLRREFSAFGTIKSAKVM-MDDGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVT 673
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIP 286
+AQ K++R ++L Y+++ +TN + Q +YQ PG +G +P
Sbjct: 674 LAQRKKDRKAHLDSQYSQR-----NTNMRM-----QSIGPIYQ-PGASNGYFVP 716
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 19/164 (11%)
Query: 87 VSQD--GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL--RAGRIQESASFNN 142
V+QD G SKGYGFV + T++SA +IEK+ + G +++ R R +E
Sbjct: 435 VAQDETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQQAK 494
Query: 143 LYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFG 202
LY N+Y+KNI+++V+E EL + F + G I+S K+M + G S+GFG
Sbjct: 495 LYT--------------NVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFG 540
Query: 203 FVCFSNPDEANRAINTLNGILFHQ-KPLYVAIAQTKRERTSYLR 245
FV F +P EA +A+ L+G + K YV AQ K ER L+
Sbjct: 541 FVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELK 584
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 106/201 (52%), Gaps = 16/201 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 150 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFVHYETDEAASQAIKH--- 206
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
V GM L + G +++ K+ E + N+YVKNI DV E +
Sbjct: 207 --VNGMLLNEKKVYVG--------HHIPKKDRQSKFEEMKANFTNVYVKNIAADVTEDDF 256
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+Q F + G ++S + R G S+GFGFV F+ + A++A++ LN FH + LYV AQ
Sbjct: 257 RQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDELNNKDFHGQDLYVGRAQ 316
Query: 236 TKRERTSYLRIMY--AKQGPG 254
K ER LR Y A++G G
Sbjct: 317 KKHEREEELRKSYEAARRGEG 337
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 124/277 (44%), Gaps = 47/277 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+A+ + Q+F K+GD+ SS + Q+GKS+G+GFV ++T ESA A+++L
Sbjct: 243 YVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESASKAVDELNN 302
Query: 117 ATVEGMELYA--------------PSLRAGRIQESASFNN--------LYVKNLDDDVTE 154
G +LY S A R E N ++ +V E
Sbjct: 303 KDFHGQDLYVGRAQKKHEREEELRKSYEAARRGEGQQMNKECGSITSTKVMRETPTEVVE 362
Query: 155 EILDKNLYVKN-------------INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGF 201
E +K VK + DE + + + S K+ G SKGF
Sbjct: 363 EKKEKAETVKENQEEVKDEVKEEPKEESKDETKEGEEDKKAEKKSDKKL-----GKSKGF 417
Query: 202 GFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR--IMYAKQGPGLASTN 259
GFVCFSNPD+A +A+ +N +F+ KPLYVA+AQ K R S L I Q +
Sbjct: 418 GFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQARNQ---IRMQQ 474
Query: 260 FPVHPTLYQRALQ--VYQAPGFRHGGMIPNGFSSPPP 294
H + Q+ +Q VY APG + G M G P P
Sbjct: 475 AVAHAGMPQQYMQPPVYFAPGQQPGFMPQGGRGVPFP 511
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+ A+E+
Sbjct: 62 YVGELDPSVTEAMLFELFSQIGAVAS--IRVCRDAVTRRSLGYAYVNYNATPDGEKALEE 119
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 120 LNYTIIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 161
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 162 ALHDTFAAFGNILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 221
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 222 HIPKKDRQSKFEEMKA 237
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 4/210 (1%)
Query: 65 IDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124
+D+ +L +F KFG S KV++ + G SKG+GFV + E A++++ + ++
Sbjct: 1 MDDERLKDLFGKFGPALSVKVMMDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQI 60
Query: 125 YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGI 184
Y RA + E + ++++ D NLYVKN++D +DE L++ FS G
Sbjct: 61 YIS--RAHKTAEWQTELRCKFEHMNQDRATRYQGVNLYVKNLDDGIDEGCLQKEFSPFGT 118
Query: 185 ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
I+ K M G S+GFGFV FS+P+EA +A+ +NG + KPL VA+AQ K ER ++L
Sbjct: 119 ITGAKFMMEG-GPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHL 177
Query: 245 RIMYAKQGPGLASTNFPV-HPTLYQRALQV 273
Y ++ + + PV P Q LQV
Sbjct: 178 TNQYMQRMASVRAVPNPVILPATSQHLLQV 207
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 100/196 (51%), Gaps = 20/196 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 138 FIKNLDHAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANNAIKH--- 194
Query: 117 ATVEGMELYAPSLRAG----RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
V GM L + G + + + F + N+YVKNI+ DV +
Sbjct: 195 --VNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFT-----------NIYVKNIDLDVTD 241
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
E + F + G I+S I R ++G S+GFGFV + + A+ A+ TLN FH + LYV
Sbjct: 242 DEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAVETLNDTEFHGQKLYVG 301
Query: 233 IAQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 302 RAQKKHEREEELRKQY 317
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 113/244 (46%), Gaps = 56/244 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + +F K GDI S+ + GKS+G+GFV Y E+A A+E L
Sbjct: 231 YVKNIDLDVTDDEFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASVAVETLND 290
Query: 117 ATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEILDKN 160
G +LY LR A R+++ + + NLY+KNL+DDV +E L ++
Sbjct: 291 TEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKL-RD 349
Query: 161 LYV--------KNINDDV-------------------------------DEIELKQYFSQ 181
++ K + D + D + K+ ++
Sbjct: 350 MFTPFGTITSAKVMRDAMPADRSDSPSDKKEEEKDGKEESKETEGEAKEDSTDDKKEDTK 409
Query: 182 CGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
G ++K + G SKGFGFVCFSNPDEA +A+ +N + KPLYVA+AQ K R
Sbjct: 410 AGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQRKDVRK 469
Query: 242 SYLR 245
+ L
Sbjct: 470 NQLE 473
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y++ E A+E+
Sbjct: 50 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 107
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 108 LNYTVIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDHAIDNK 149
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L ++K ++V
Sbjct: 150 ALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGH 209
Query: 234 AQTKRERTSYLRIMYA 249
K+ER S M A
Sbjct: 210 HIPKKERMSKFEEMKA 225
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 57/240 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + + +F+K+G++ SS + Q+GKS+G+GFV ++T E+A A+E+L
Sbjct: 245 YVKNINSEASDDEFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAVEELNG 304
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
G +LY GR Q+ K+ + +E +K NLY+KN++DDVD+
Sbjct: 305 KDFRGQDLYV-----GRAQKKHEREEELRKSYEA-ARQEKANKYQGVNLYIKNLSDDVDD 358
Query: 173 IELKQYFSQCGIISSVKIMRTN-------------------------------------- 194
+L+ FS+ G I+S K+MR +
Sbjct: 359 EKLRAMFSEFGPITSAKVMRDSISEGEDEEKAEEETPAPEAEVKKEDSEADADSQEAADK 418
Query: 195 ---------RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G SKGFGFVCFSNP++A +A+ +N + KPLYVA+AQ K R + L
Sbjct: 419 KDAKKGDKKLGKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQLE 478
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 152 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAAQAIKH--- 208
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + G ++ D E + N+YVKNIN + +
Sbjct: 209 --VNGMLLNEKKVYVGH----------HIPKKDRQSKFEEMKANFTNVYVKNINSEASDD 256
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E + F++ G ++S + R G S+GFGFV F+ + A++A+ LNG F + LYV
Sbjct: 257 EFRDLFTKYGEVTSSSLARDQEGKSRGFGFVNFTTHEAASQAVEELNGKDFRGQDLYVGR 316
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 317 AQKKHEREEELRKSY 331
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L + L ++FS G + S + V +D +S GY +V Y+T A+E+
Sbjct: 64 YVGELEPQVTEAMLFELFSHIGPVAS--IRVCRDAVTRRSLGYAYVNYNTTSDGEKALEE 121
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + G R RI S D + N+++KN++ +D
Sbjct: 122 LNYTVING--------RPCRIMWSQR----------DPALRKNGQGNVFIKNLDVAIDNK 163
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A +AI +NG+L ++K +YV
Sbjct: 164 ALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGH 223
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 224 HIPKKDRQSKFEEMKA 239
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 101/189 (53%), Gaps = 15/189 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++D+ L FS FG+I S KVV + SKG+GFV Y +Q+SA AI K+
Sbjct: 99 FIKNLDKSVDHKALFDTFSAFGNILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNG 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + + T+E+ N+YVKN+++DV+E EL+
Sbjct: 159 MIINDQKVFVGPFKSSK---------------ERGQTQELKYTNVYVKNLSEDVNEEELR 203
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
G I+++ IM + SKGFGF F PDEA + NG LFH K +YV AQ
Sbjct: 204 DLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAKNCVEAENGKLFHGKVIYVGRAQK 263
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 264 KMEREAELK 272
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 10/195 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ ++ +L + +G I + ++ + KSKG+GF + T + A N +E
Sbjct: 189 YVKNLSEDVNEEELRDLLVPYGKITNLTIMSDEKSKSKGFGFANFETPDEAKNCVEAENG 248
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
G +Y GR Q+ L + NLY+KNI+D +D +L+
Sbjct: 249 KLFHGKVIYV-----GRAQKKMERE----AELKHKFETKYQGVNLYIKNIDDSIDSDKLR 299
Query: 177 QYFSQCGIISSVKIMRTNRGIS-KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F+ G I+S K+MR ++ S KGFGFVC++ PDEA++A+ ++G + KPLYVA AQ
Sbjct: 300 STFAAYGTITSAKVMRDDKSTSSKGFGFVCYTTPDEASKAVAEMHGRMVGNKPLYVAFAQ 359
Query: 236 TKRERTSYLRIMYAK 250
K R +L + K
Sbjct: 360 RKEIRRQHLEAQHNK 374
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 92/193 (47%), Gaps = 19/193 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + + +L +IF++ G + + ++ + +S Y +V Y A A++ L
Sbjct: 11 YVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALDTLN 70
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V+G +A RI S +L + N+++KN++ VD L
Sbjct: 71 NTLVKG--------KACRIMWSQRDPSLRKSGVG----------NIFIKNLDKSVDHKAL 112
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ +SKGFGFV + + D A++AI +NG++ + + ++V +
Sbjct: 113 FDTFSAFGNILSCKVVTDETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFK 172
Query: 236 TKRERTSYLRIMY 248
+ +ER + Y
Sbjct: 173 SSKERGQTQELKY 185
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 16/97 (16%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINT 218
+LYV +++ DV + +L + F+Q G +++++I R T S + +V + NP +A RA++T
Sbjct: 9 SLYVGDLHQDVTDSQLFEIFNQVGPVANLRICRDTTTRRSLNYAYVNYHNPADAERALDT 68
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
LN L K RIM++++ P L
Sbjct: 69 LNNTLVKGK---------------ACRIMWSQRDPSL 90
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 10/219 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS---KGYGFVQYSTQESALNAIEK 113
+ NL + + L + F FG + S+ VV +D S +G+GFV Y + A A+E
Sbjct: 255 YVKNLPTQWTDADLRREFEPFGQVNSA--VVMKDPNSATNRGFGFVNYEDADGAHAAVEG 312
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDV 170
L T +G+ L G+ Q+ + D E I NLYVKN++D +
Sbjct: 313 LSGKTFKGVNGVDLELYVGKAQKRTERERELRQKFDQLKLERINKYQGVNLYVKNLDDLL 372
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ EL++ F+ G I+S ++MR + G S+GFGFVCFS P+EA A+ +NG L KP+Y
Sbjct: 373 QDEELREAFTNYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATAVAEMNGKLITGKPVY 432
Query: 231 VAIAQTKRERTSYLRIMYAKQGPG-LASTNFPV-HPTLY 267
VA AQ K R + L +A++ G L + P+ P +Y
Sbjct: 433 VAFAQRKEVRRAQLEAQHAQRATGVLVNRGMPMGQPPMY 471
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV G+SKGYG+V Y T E+A AI K+
Sbjct: 167 FVKNLDPSIDNKALYDTFSLFGNILSCKVANDPTGQSKGYGYVHYETAEAATEAINKING 226
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G E++ G Q+ ++ +D T N YVKN+ + +L+
Sbjct: 227 MLIAGTEVF-----VGHFQKRQERPDI------EDWT------NCYVKNLPTQWTDADLR 269
Query: 177 QYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFH-----QKPLY 230
+ F G ++S +M+ N ++GFGFV + + D A+ A+ L+G F LY
Sbjct: 270 REFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSGKTFKGVNGVDLELY 329
Query: 231 VAIAQTKRERTSYLR 245
V AQ + ER LR
Sbjct: 330 VGKAQKRTERERELR 344
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 23/174 (13%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126
L +IF+ G + S + V +D +S GY +V + A A++ + ++G+
Sbjct: 92 LFEIFNAVGPVAS--IRVCRDAVTRRSLGYAYVNFHNLVDAERALDTMNFTCIKGVPC-- 147
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIIS 186
RI S +L + N++VKN++ +D L FS G I
Sbjct: 148 ------RIMWSQRDPSLRKSGVG----------NIFVKNLDPSIDNKALYDTFSLFGNIL 191
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
S K+ G SKG+G+V + + A AIN +NG+L ++V Q ++ER
Sbjct: 192 SCKVANDPTGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQKRQER 245
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 108/183 (59%), Gaps = 11/183 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L+++FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 193 YIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G L+ GR Q+ A +K + + + E + LY+KN+++ +D+
Sbjct: 253 KDINGQLLFV-----GRAQKKAE-RQAELKQMFEQLKHERFRRCQGAKLYIKNLDETIDD 306
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G IS VK+M+ G SKGFG +CFS+ +EA +A+ +NG + KPL +A
Sbjct: 307 EKLRREFSSFGSISRVKVMQEE-GRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIA 365
Query: 233 IAQ 235
+AQ
Sbjct: 366 LAQ 368
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 107/192 (55%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D S+GY FV + Q +A AIE++
Sbjct: 101 FIKNLDRSIDNKTLYEHFSAFGKILSSKVM-SDDHGSRGYAFVHFQNQIAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A ++ L+ ++ + +E A F N E N+Y+KN D++D+ L
Sbjct: 160 ALLKDCRLFVGRFKSRKDRE-AEFQN---------KAHEFT--NVYIKNFGDEMDDERLN 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M + G SKGFGFV F + + A RA+ +NG + + L+V AQ
Sbjct: 208 EVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQK 267
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 268 KAERQAELKQMF 279
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M + G S+G+ FV F N A+RAI +
Sbjct: 99 NVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDHG-SRGYAFVHFQNQIAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTS 242
NG L L+V +++++R +
Sbjct: 158 NGALLKDCRLFVGRFKSRKDREA 180
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 137/269 (50%), Gaps = 26/269 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ ++ + L F ++G I S+ V+ DGKSK +GFV + ++A A+E L
Sbjct: 206 YVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNG 265
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y +E L +K + +E +DK NLY+KN++D V +
Sbjct: 266 KKFDDKEWYVGKALKKYERE------LELKERHEQSMKETVDKFYGANLYLKNLDDSVTD 319
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS+ G ++S KI+R +GIS+G GFV FS P+EA RA+ +NG + KPLYVA
Sbjct: 320 EKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVA 379
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQA--PGFRHGGMIPNGFS 290
AQ K ER + L+ +++ P T P+ P L Y A PG M +
Sbjct: 380 PAQKKEERKARLQAQFSQVRP---VTMAPIAPR-----LPFYPAGVPGMGQQIM----YG 427
Query: 291 SPPPSPLFLTRAGQAAANNLTNGNQRAAA 319
PP+ F+++AG L G + A
Sbjct: 428 QAPPA--FISQAGFGYPQQLVPGMRPGGA 454
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 96/189 (50%), Gaps = 14/189 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ L+ FS FG+I S K+ + G SKGYGFVQ+ +ESA +AI+KL
Sbjct: 115 FIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKL-- 172
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
GM L + G Q K D+ N+YVKN+++ V + +LK
Sbjct: 173 ---NGMLLNDKPVYVGHFQR---------KQDRDNALSNAKFNNVYVKNLSESVTDDDLK 220
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G I+S +MR G SK FGFV F N D A A+ LNG F K YV A
Sbjct: 221 NTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALK 280
Query: 237 KRERTSYLR 245
K ER L+
Sbjct: 281 KYERELELK 289
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 25/208 (12%)
Query: 40 IASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGY 96
+A+ V + + T + + +L + + +L+ +F++ G + S ++ + SQ +S GY
Sbjct: 12 VAAAPVPNQLTTTSL--YVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQ--QSLGY 67
Query: 97 GFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI 156
G+V +S A A++ L + + RI S D +
Sbjct: 68 GYVNFSNPHDAAKAMDVLNFTPLNNKPI--------RIMYSHR----------DPSVRKS 109
Query: 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
N+++KN++ +D L FS G I S KI G+SKG+GFV F N + A AI
Sbjct: 110 GAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAI 169
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYL 244
+ LNG+L + KP+YV Q K++R + L
Sbjct: 170 DKLNGMLLNDKPVYVGHFQRKQDRDNAL 197
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 21/116 (18%)
Query: 146 KNLDDDVT-----EEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISK 199
+N+++DV ++ +LYV +++ DV + +L F+Q G + SV+I R S
Sbjct: 6 ENVNNDVAAAPVPNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSL 65
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G+G+V FSNP +A +A++ LN + KP +RIMY+ + P +
Sbjct: 66 GYGYVNFSNPHDAAKAMDVLNFTPLNNKP---------------IRIMYSHRDPSV 106
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 251 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 310
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LY+KN++D +D+ +L+
Sbjct: 311 RDINGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 369 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 159 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 217
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G +++ + + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 218 KLLKGCKVFVGRFKNRKDREAE------LRSKASEFT------NIYIKNFGGDMDDERLK 265
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 266 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ M+ +
Sbjct: 326 KVERQAELKQMFEQ 339
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L + FS G + S ++ Q +S GY +V + A A++ + ++G S
Sbjct: 84 LFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDMIKG-----KS 138
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
+R Q A + N+ ++KN++ +D L ++FS G I S
Sbjct: 139 IRLMWSQRDAYLRRSGIGNV-------------FIKNLDKSIDNKTLYEHFSAFGKILSS 185
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
K+M ++G SKG+ FV F N A+RAI +NG L ++V + +++R + LR
Sbjct: 186 KVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELR 241
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 116/213 (54%), Gaps = 16/213 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F+K+G I S V+ S DGKSKG+GFV ++ E A A++ L
Sbjct: 34 YVKNFGDHYNKESLEKLFAKYGTITSCDVMTS-DGKSKGFGFVAFAEPEEAEAAVQALND 92
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ VEG +L RA + S + +K + E + K NLYVKN+++ VD+
Sbjct: 93 SPVEGSDLKLHVCRA----QKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDD 148
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA
Sbjct: 149 EALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVA 208
Query: 233 IAQTKRERTSYLRIMYAKQGPGLAS----TNFP 261
+AQ K +R + L Y ++ LAS TN P
Sbjct: 209 LAQRKEDRRAQLASQYMQR---LASMRMHTNVP 238
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+YVKN D ++ L++ F++ G I+S +M T+ G SKGFGFV F+ P+EA A+ L
Sbjct: 32 NVYVKNFGDHYNKESLEKLFAKYGTITSCDVM-TSDGKSKGFGFVAFAEPEEAEAAVQAL 90
Query: 220 NG--ILFHQKPLYVAIAQTKRERTSYLR 245
N + L+V AQ K ER + L+
Sbjct: 91 NDSPVEGSDLKLHVCRAQKKSERHAELK 118
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 104/187 (55%), Gaps = 6/187 (3%)
Query: 65 IDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124
+D+ +L +F S KV+ + GKSKG+ FV + E A A++++ + G ++
Sbjct: 1 MDDERLKDLFR---PALSVKVMTDESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQI 57
Query: 125 YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGI 184
Y RA + E + + + D NLYVKN++D +D+ L++ FS G
Sbjct: 58 YV--GRAQKKVEPQTEPKHKFEQMKQDTITRYQGVNLYVKNLDDGIDDEHLRKEFSPFGT 115
Query: 185 ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
I+S K+M G SKGFGFVCFS+P+EA +A+ +NG KPLYVA+AQ K E ++L
Sbjct: 116 ITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHL 174
Query: 245 RIMYAKQ 251
Y ++
Sbjct: 175 TSQYMQR 181
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A++++
Sbjct: 93 YVKNLDDGIDDEHLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVKEMNG 151
Query: 117 ATVEGMELY 125
TV LY
Sbjct: 152 RTVATKPLY 160
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 105/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 192 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM-- 248
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
GM L + GR + K + ++ + N+Y+KN +D+D+ L
Sbjct: 249 ---NGMLLNDRKVFVGRFKSR--------KEREAELGARAKEFTNVYIKNFGEDMDDERL 297
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 298 KDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 357
Query: 236 TKRERTSYLR 245
K ER + L+
Sbjct: 358 KKVERQTELK 367
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 20/206 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 284 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 343
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 344 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 401
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K N +EA +A+ +NG + KPLYVA+AQ
Sbjct: 402 KEFSPFGTITSAK------------------NSEEATKAVTEMNGRIVATKPLYVALAQR 443
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 444 KEERQAHLTNQYMQRMASVRAVPNPV 469
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 190 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 248
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 249 NGMLLNDRKVFVGRFKSRKEREAEL 273
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 116/213 (54%), Gaps = 16/213 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F+K+G I S V+ S DGKSKG+GFV ++ E A A++ L
Sbjct: 216 YVKNFGDHYNKESLEKLFAKYGTITSCDVMTS-DGKSKGFGFVAFAEPEEAEAAVQALND 274
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ VEG +L RA + S + +K + E + K NLYVKN+++ VD+
Sbjct: 275 SPVEGSDLKLHVCRA----QKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDD 330
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F G I+S K+M G SKGFGFVCF P+EA A+ +N + KPLYVA
Sbjct: 331 EALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVA 390
Query: 233 IAQTKRERTSYLRIMYAKQGPGLAS----TNFP 261
+AQ K +R + L Y ++ LAS TN P
Sbjct: 391 LAQRKEDRRAQLASQYMQR---LASMRMHTNVP 420
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 106/191 (55%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + ++G SKGYGFV + T+E+A NAI+K
Sbjct: 123 FIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQK--- 179
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ Q A N + L + + N+YVKN D ++ L+
Sbjct: 180 --VNGMLLAGKKVFVGKFQPRAQRN----RELGETAKKYT---NVYVKNFGDHYNKESLE 230
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG--ILFHQKPLYVAIA 234
+ F++ G I+S +M T+ G SKGFGFV F+ P+EA A+ LN + L+V A
Sbjct: 231 KLFAKYGTITSCDVM-TSDGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRA 289
Query: 235 QTKRERTSYLR 245
Q K ER + L+
Sbjct: 290 QKKSERHAELK 300
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ G SKG+GFV F + A AI +
Sbjct: 121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKV 180
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L K ++V Q + +R L
Sbjct: 181 NGMLLAGKKVFVGKFQPRAQRNREL 205
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDEANRAINT 218
+LYV +++ DV+E L + FS G + S+++ R N +S G+ +V F P +A RA++T
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 219 LNGILFHQKPLYVAIAQ 235
+N H KP+ + +Q
Sbjct: 93 MNFEALHGKPMRIMWSQ 109
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 251 YIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 310
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LY+KN++D +D+ +L+
Sbjct: 311 RDINGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 369 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 159 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 217
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G +++ + + +E+ +++ + T N+Y+KN ++D+ LK
Sbjct: 218 KLLKGCKVFVGRFKNRKDREAE------LRSKASEFT------NIYIKNFGGEMDDERLK 265
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 266 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ M+ +
Sbjct: 326 KVERQAELKQMFEQ 339
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELR 241
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 102/192 (53%), Gaps = 12/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH FS+FG+I S KV + G SKGYGFV Y T E+A AI+ +
Sbjct: 152 FIKNLDAAIDNKALHDTFSQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNG 211
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ A R ++S ++ + + T N+Y+KNI++ V + E
Sbjct: 212 MLLNDKKVFVGHHIAKRDRQSK------LEEMKANFT------NVYIKNIDESVSDEEFT 259
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G + S I R G S+GFGFV F++ + A +A+ LN FH K LYV AQ
Sbjct: 260 KLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQK 319
Query: 237 KRERTSYLRIMY 248
K ER LR Y
Sbjct: 320 KHEREEELRRQY 331
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 112/244 (45%), Gaps = 56/244 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ ++ + + ++F +G++ S+ + ++GKS+G+GFV +++ ESA A+E+L
Sbjct: 245 YIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAVEELND 304
Query: 117 ATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNL----DDDVTEEI 156
G +LY LR A R+++++ + NLYVKNL DDD E+
Sbjct: 305 KEFHGKKLYVGRAQKKHEREEELRRQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLREL 364
Query: 157 L------------------------DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR 192
DK+ K E E K +
Sbjct: 365 FSSYGTITSAKVMRDSAERTASPANDKDKENKKAETTEGESEQKAESQEKDESKEESKEE 424
Query: 193 TNR------------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
T G SKGFGFVCFSNPDEA++A++ +N + + KPLYVA+AQ K R
Sbjct: 425 TKESKETKKENKKNLGKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRKDVR 484
Query: 241 TSYL 244
+ L
Sbjct: 485 RNQL 488
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 64 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 121
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L +++G R RI S D + N+++KN++ +D
Sbjct: 122 LNYTSIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDAAIDNK 163
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FSQ G I S K+ + G SKG+GFV + + AN+AI ++NG+L + K ++V
Sbjct: 164 ALHDTFSQFGNILSCKVAQDELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGH 223
Query: 234 AQTKRERTSYLRIMYA 249
KR+R S L M A
Sbjct: 224 HIAKRDRQSKLEEMKA 239
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 104/190 (54%), Gaps = 19/190 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D+ KL +IFS++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNFGDEVDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESAS--------FNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+++G LY GR Q+ F L VK + Y+KN+++
Sbjct: 262 KSIDGKALYV-----GRAQKKIERLAELRRRFERLKVKEKSRPPGVPV-----YIKNLDE 311
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+D+ +L++ FS G IS K+M G KGFG VCFS+ +EA +A+ +NG + KP
Sbjct: 312 TIDDEKLREEFSSFGSISRAKVM-VEVGQGKGFGVVCFSSFEEATKAVGEMNGRMVGSKP 370
Query: 229 LYVAIAQTKR 238
L+V + Q +R
Sbjct: 371 LHVTLGQARR 380
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 103/201 (51%), Gaps = 26/201 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN D+
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNF------------------GDE 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
VD+ +LK+ FS+ G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 VDDEKLKEIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKAL 269
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
YV AQ K ER + LR + +
Sbjct: 270 YVGRAQKKIERLAELRRRFER 290
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 250 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 309
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LY+KN++D +D+ +L+
Sbjct: 310 RDINGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 367
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 368 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 425
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 158 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 216
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G +++ + + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 217 KLLKGCKVFVGRFKNRKDREAE------LRSKASEFT------NIYIKNFGGDMDDERLK 264
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 265 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 324
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ M+ +
Sbjct: 325 KVERQAELKQMFEQ 338
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 156 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 214
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 215 NGKLLKGCKVFVGRFKNRKDREAELR 240
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 101/199 (50%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 146 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNG 205
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN+D D TEE
Sbjct: 206 MLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEE--------------- 250
Query: 171 DEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G I+S + R G S+GFGFV F++ D A A+ LN F + L
Sbjct: 251 ---EFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 308 YVGRAQKKHEREEELRKQY 326
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 52/241 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + +F KFG+I S+ + ++ GKS+G+GFV +++ ++A A+E L
Sbjct: 239 YVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Query: 116 AATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEILD- 158
+G +LY LR A RI++++ + NLY+KNL DD+ +E L
Sbjct: 299 DKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRE 358
Query: 159 --------------KNLYVKNINDDVDEIE---------LKQYFSQCGIISSVKIMRTNR 195
++ ++ +D E + ++ + G + K + N+
Sbjct: 359 LFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENK 418
Query: 196 -----------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G SKGFGFVCFS+PDEA++A+ +N + H KPLYVA+AQ K R S L
Sbjct: 419 AESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQL 478
Query: 245 R 245
Sbjct: 479 E 479
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 58 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 116 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 157
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L + K ++V
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGH 217
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 218 HIAKKDRQSKFEEMKA 233
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 251 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 310
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LY+KN++D +D+ +L+
Sbjct: 311 RDINGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 369 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 159 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 217
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G +++ + + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 218 KLLKGCKVFVGRFKNRKDREAE------LRSKASEFT------NIYIKNFGGDMDDERLK 265
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 266 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ M+ +
Sbjct: 326 KVERQAELKQMFEQ 339
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELR 241
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 251 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 310
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LY+KN++D +D+ +L+
Sbjct: 311 RDINGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 368
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 369 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 159 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 217
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G +++ + + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 218 KLLKGCKVFVGRFKNRKDREAE------LRSKASEFT------NVYIKNFGGDMDDERLK 265
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 266 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ M+ +
Sbjct: 326 KVERQAELKQMFEQ 339
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELR 241
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+
Sbjct: 151 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKH--- 207
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN---LYVKNINDDVDEI 173
V GM L E + ++ D E + N +YVKNI+ + E
Sbjct: 208 --VNGMLL----------NEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEATED 255
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ +Q F Q G ++S + R G S+GFGFV F+ + A +A++ LNG F + LYV
Sbjct: 256 DFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAVDELNGKDFRGQDLYVGR 315
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 316 AQKKHEREEELRKSY 330
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 136/295 (46%), Gaps = 64/295 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N++ Q+F ++GD+ SS + Q+GKS+G+GFV ++T ESA A+++L
Sbjct: 244 YVKNISPEATEDDFRQLFEQYGDVTSSSLARDQEGKSRGFGFVNFTTHESAAKAVDELNG 303
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN++DDVD+
Sbjct: 304 KDFRGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 358
Query: 174 ELKQYFSQCGIISSVKIMR------------------------TNR-------------- 195
+L+Q FS+ G I+S K+MR N+
Sbjct: 359 KLRQMFSEFGPITSAKVMRDTPVENEDEKPAEEKKEEQEDKDKENKPEETKEGEEGAEKK 418
Query: 196 ---------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR- 245
G SKGFGFVCFSNPD+A +A+ +N + KPLYVA+AQ K R S L
Sbjct: 419 AEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMVSNKPLYVALAQRKDVRKSQLEA 478
Query: 246 -IMYAKQGPGLASTNFPVHPTLYQRALQ--VYQAPGFRHGGMIPNGFSSPP-PSP 296
I Q L + Q+ +Q VY APG + G IP G P P P
Sbjct: 479 SIQARNQ---LRMQQAAAAAGMPQQYMQPPVYFAPG-QQPGFIPQGGRGMPFPQP 529
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L + L ++FS+ G + S + V +D +S GY +V Y++ A+E+
Sbjct: 63 YVGELDPAVTEAMLFELFSQIGAVAS--IRVCRDAVTRRSLGYAYVNYNSTADGEKALEE 120
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 121 LNYTIIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 162
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A +AI +NG+L ++K +YV
Sbjct: 163 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGH 222
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 223 HIPKKDRQSKFEEMKA 238
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R S G+ +V +++ + +A+
Sbjct: 61 SLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRR--SLGYAYVNYNSTADGEKAL 118
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN + +P RIM++++ P L T
Sbjct: 119 EELNYTIIKGRP---------------CRIMWSQRDPALRKT 145
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 12/201 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + + + F ++G+I S K++ +DG SK +GFV + + A E++
Sbjct: 206 YVKNFPDNVSDDDFRKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDAKKCCEEMNG 265
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
G E + AGR ++ + K D E + + NLY+KN++D +D+
Sbjct: 266 QKPFGGER---DIYAGRAEKESERKEKLKKKYDQIRMERLKNNQLVNLYIKNLDDTIDDE 322
Query: 174 ELKQYFSQCGIISSVKIMRTNR--GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+L+Q F Q G I+S K+MR +SKGFGFVCF+ P+EA RA+ +NG + KP+YV
Sbjct: 323 KLRQTFEQFGTITSAKVMRDKDRPEVSKGFGFVCFAQPEEATRAVTAMNGQMVGTKPIYV 382
Query: 232 AIAQTKRERTSYLRIMYAKQG 252
A+ Q R R M A QG
Sbjct: 383 ALHQPIEIR----RQMQAAQG 399
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 99/199 (49%), Gaps = 26/199 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL T+D LH FS+FG+I S KV + + S+G+GFVQ+ T E A AI K+
Sbjct: 115 FIKNLDKTVDTRTLHDTFSQFGNILSCKVSMDEHANSRGFGFVQFETAEEANEAISKVNG 174
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+E L+ P + G +ES + + N+YVKN D+V + +
Sbjct: 175 MLLEDKRLFVGPFIPRGE-RESTNGERRFT--------------NVYVKNFPDNVSDDDF 219
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP------L 229
++ F + G I+S KIMR G SK FGFV F D+A + +NG QKP +
Sbjct: 220 RKSFERYGEITSCKIMRKEDGTSKCFGFVNFKEADDAKKCCEEMNG----QKPFGGERDI 275
Query: 230 YVAIAQTKRERTSYLRIMY 248
Y A+ + ER L+ Y
Sbjct: 276 YAGRAEKESERKEKLKKKY 294
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 21/192 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + +L ++FS G + S +V + +S GY +V + A A++ L
Sbjct: 27 YVGDLDPNVTEPQLFEVFSVVGPVASIRVCRDAMTRRSLGYAYVNFHNVVDAERALDTLN 86
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G +A RI K+ D + + N+++KN++ VD L
Sbjct: 87 YTQIKG--------KACRI---------MWKHRDPSIRKSGAG-NIFIKNLDKTVDTRTL 128
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA--I 233
FSQ G I S K+ S+GFGFV F +EAN AI+ +NG+L K L+V I
Sbjct: 129 HDTFSQFGNILSCKVSMDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFVGPFI 188
Query: 234 AQTKRERTSYLR 245
+ +RE T+ R
Sbjct: 189 PRGERESTNGER 200
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 111/194 (57%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D S+GY FV + +Q +A AIE++
Sbjct: 101 FIKNLDRSIDNKMLYEHFSAFGKILSSKVM-SDDKGSRGYAFVHFQSQSAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A ++ L+ + + +E+ ++N ++ T N+Y+KN DD+D+ LK
Sbjct: 160 ALLKNCRLFVGPFKNRKEREAE------LQNKANEFT------NVYIKNFGDDMDDERLK 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G I SVK+M + G SKGFGFV F + A RA+ +NG + ++V AQ
Sbjct: 208 EVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQK 267
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ M+ +
Sbjct: 268 KAERQAELKQMFEQ 281
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 105/183 (57%), Gaps = 11/183 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FS++G I S KV+ GKSKG+GFV + T E+A A+E +
Sbjct: 193 YIKNFGDDMDDERLKEVFSQYGKIVSVKVMTDSSGKSKGFGFVSFDTHEAAQRAVEYMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ A +K + + + E + LY+KN+++ +DE
Sbjct: 253 KDICGQMVFV-----GRAQKKAE-RQAELKQMFEQLKRERFGRCRGVKLYIKNLDETIDE 306
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G +S VK+M G SKGFG +CFS P+EA +A+ +NG + K + +A
Sbjct: 307 EQLRRAFSSFGSMSRVKVMEEE-GRSKGFGLICFSCPEEATKAMAEMNGQVLGSKAINIA 365
Query: 233 IAQ 235
+AQ
Sbjct: 366 LAQ 368
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G S+G+ FV F + A+RAI +
Sbjct: 99 NVFIKNLDRSIDNKMLYEHFSAFGKILSSKVMSDDKG-SRGYAFVHFQSQSAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L L+V + ++ER + L+
Sbjct: 158 NGALLKNCRLFVGPFKNRKEREAELQ 183
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 101/199 (50%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 146 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNG 205
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN+D D TEE
Sbjct: 206 MLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEE--------------- 250
Query: 171 DEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G I+S + R G S+GFGFV F++ D A A+ LN F + L
Sbjct: 251 ---EFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 308 YVGRAQKKHEREEELRKQY 326
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 52/241 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + +F KFG+I S+ + ++ GKS+G+GFV +++ ++A A+E L
Sbjct: 239 YVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Query: 116 AATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEILD- 158
+G +LY LR A RI++++ + NLY+KNL DD+ +E L
Sbjct: 299 DKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRE 358
Query: 159 --------------KNLYVKNINDDVDEIE---------LKQYFSQCGIISSVKIMRTNR 195
++ ++ +D E + ++ + G + K + N+
Sbjct: 359 LFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENK 418
Query: 196 -----------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G SKGFGFVCFS+PDEA++A+ +N + H KPLYVA+AQ K R S L
Sbjct: 419 AESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQL 478
Query: 245 R 245
Sbjct: 479 E 479
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 58 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 116 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 157
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L + K ++V
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGH 217
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 218 HIAKKDRQSKFEEMKA 233
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 101/199 (50%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 146 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNG 205
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN+D D TEE
Sbjct: 206 MLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEE--------------- 250
Query: 171 DEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G I+S + R G S+GFGFV F++ D A A+ LN F + L
Sbjct: 251 ---EFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 308 YVGRAQKKHEREEELRKQY 326
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 52/241 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + +F KFG+I S+ + ++ GKS+G+GFV +++ ++A A+E L
Sbjct: 239 YVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Query: 116 AATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEILD- 158
+G +LY LR A RI++++ + NLY+KNL DD+ +E L
Sbjct: 299 DKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRE 358
Query: 159 --------------KNLYVKNINDDVDEIE---------LKQYFSQCGIISSVKIMRTNR 195
++ ++ +D E + ++ + G + K + N+
Sbjct: 359 LFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENK 418
Query: 196 -----------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G SKGFGFVCFS+PDEA++A+ +N + H KPLYVA+AQ K R S L
Sbjct: 419 AESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQL 478
Query: 245 R 245
Sbjct: 479 E 479
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 58 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 116 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 157
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L + K ++V
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGH 217
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 218 HIAKKDRQSKFEEMKA 233
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 106/179 (59%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FSK+G S KV+ GKSKG+GFV + E+A A+E++
Sbjct: 193 YIKNFGDDMDDERLREVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + + + + LY+KN++D +D+ +L+
Sbjct: 253 KDINGQLIFVGRAQK-KVERQAELKQMFEQQKRERI-RKCQGVKLYIKNLDDTIDDEKLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G IS VK+M+ G SKGFG +CFS+P+EA +A+ +NG + KPL +A++Q
Sbjct: 311 KEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLNIALSQ 368
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 110/195 (56%), Gaps = 13/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 101 FIKNLDRSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ +++ + + +E+ ++N + T N+Y+KN DD+D+ L+
Sbjct: 160 KLLKDCKVFVGRFKNRKDREAE------LRNKASEFT------NVYIKNFGDDMDDERLR 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M G SKGFGFV F N + A +A+ +NG + + ++V AQ
Sbjct: 208 EVFSKYGKTLSVKVMTDPSGKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQK 267
Query: 237 KRERTSYLRIMYAKQ 251
K ER + L+ M+ +Q
Sbjct: 268 KVERQAELKQMFEQQ 282
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 99 NVFIKNLDRSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 158 NGKLLKDCKVFVGRFKNRKDREAELR 183
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 102/192 (53%), Gaps = 8/192 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + ++F K+G I S + GK +G+ FV ++T +SA A+++L
Sbjct: 253 YVKNLDLDTTEEEFTKLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELND 312
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
+G +LY GR Q+ K + E+I NL+VKN+ D++D+
Sbjct: 313 FEYKGKKLYV-----GRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKNLQDEIDDE 367
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
LK FS G I+S K+M SKGFGFVC+SNP+EA +AI +N + KPLYVA+
Sbjct: 368 RLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYVAL 427
Query: 234 AQTKRERTSYLR 245
AQ K R S L
Sbjct: 428 AQRKEVRRSQLE 439
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 100/194 (51%), Gaps = 12/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV V + G SKGYGFV + + +SA AIE +
Sbjct: 160 FIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNG 219
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++Y + R ++S + L + T N+YVKN++ D E E
Sbjct: 220 MLLNDKKVYVGHHISRRDRQSK------FEALKANFT------NVYVKNLDLDTTEEEFT 267
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G I+S+ + + N G +GF FV F+ D A +A++ LN + K LYV AQ
Sbjct: 268 KLFEKYGKITSLSLAKDNAGKFRGFAFVNFATHDSAQQAVDELNDFEYKGKKLYVGRAQK 327
Query: 237 KRERTSYLRIMYAK 250
K ER LR Y +
Sbjct: 328 KHERQEELRKQYEQ 341
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 23/183 (12%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126
L ++F+ G + S + V +D +S GY +V + E A+++L ++G
Sbjct: 85 LFELFNSIGPVAS--IRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKG----- 137
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIIS 186
R RI S D ++ N+++KN++ +D L FS G I
Sbjct: 138 ---RPCRIMWSQR----------DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKIL 184
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRI 246
S K+ G SKG+GFV F + D AN AI +NG+L + K +YV ++R+R S
Sbjct: 185 SCKVAVDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSKFEA 244
Query: 247 MYA 249
+ A
Sbjct: 245 LKA 247
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 15/235 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + +L ++F +G + S+ + +GK++G+GFV + A A++ L
Sbjct: 244 YVKNFGPEMTEDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDALNE 303
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+EG + L GR Q+ K E I NL+VKN++D +D+
Sbjct: 304 KELEGGRI----LYVGRAQKKREREESLRKQWQQARQERISKYQGVNLFVKNLDDTIDDT 359
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK+ F+ G I+S K+M + G S+GFGFVC++ P+EA RAIN ++ + KPLYVA+
Sbjct: 360 KLKEEFAPYGKITSAKVMTNDAGKSRGFGFVCYTKPEEATRAINEMHQRMVMGKPLYVAL 419
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF--RHGGMIP 286
AQ K R + L + ++ + Q + + AP F ++ G IP
Sbjct: 420 AQRKEVRHNQLSQQFQQR------NQMRLQQAAVQGGMGQFVAPMFYGQNAGFIP 468
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 101/198 (51%), Gaps = 23/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FG I S K+ + G SKG+GFV Y ESA AIE +
Sbjct: 151 FIKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVNG 210
Query: 117 ATVEGMELY-APSL----RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
+ ME+Y AP + R ++QE +KN N+YVKN ++
Sbjct: 211 MLLNNMEVYVAPHIPRKDRESKMQE-------MIKNF----------TNVYVKNFGPEMT 253
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN-GILFHQKPLY 230
E +L++ F G ++S + N G ++GFGFV F + EA +A++ LN L + LY
Sbjct: 254 EDQLREMFEAYGKVTSTYLPTDNEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILY 313
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ KRER LR +
Sbjct: 314 VGRAQKKREREESLRKQW 331
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 20/197 (10%)
Query: 53 TFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNA 110
TF V +L ++ L++IFSK G + S +V KS Y +V Y +E A +A
Sbjct: 58 TFASLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHA 117
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
++ L ++G + RI S ++ K N+++KN++ D+
Sbjct: 118 LDTLAFCDIKGKQC--------RIMWSQRDPSMRKKGTG----------NVFIKNLHPDI 159
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D L FS G I S KI G SKGFGFV + + + A AI +NG+L + +Y
Sbjct: 160 DNKTLYDTFSTFGKILSCKIATDEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVY 219
Query: 231 VAIAQTKRERTSYLRIM 247
VA +++R S ++ M
Sbjct: 220 VAPHIPRKDRESKMQEM 236
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 128/295 (43%), Gaps = 67/295 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + + ++F KFGD+ S+ + QD GKS+G+GFV + E A A+++L
Sbjct: 246 YVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDELN 305
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
+G +LY GR Q+ K+ + E+ NLYVKN++DDVD+
Sbjct: 306 GKDFKGQDLYV-----GRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDD 360
Query: 173 IELKQYFSQCGIISSVKIMRTNR------------------------------------- 195
+L++ F+ G I+S K+MR +
Sbjct: 361 EKLRELFTPFGAITSAKVMRDSAAETAEAEKKEEEKNKENKKEGDAEEGEKADGEKKEAP 420
Query: 196 -------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
G SKGFGFVCFSNPDEA +AI +N + + KPLYVA+AQ K R L
Sbjct: 421 KSEKRTVGKSKGFGFVCFSNPDEATKAIADMNQNMVNGKPLYVALAQRKDVRKGQLE--- 477
Query: 249 AKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSPLFLTRAG 303
AS + Q A Q P + M F P P F+ AG
Sbjct: 478 -------ASIQARNQIRMQQAAAQAGMPPQYMQAPM----FYPPGQQPGFMPAAG 521
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 98/196 (50%), Gaps = 19/196 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 153 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDESGASKGYGFVHYETDEAASQAIKH--- 209
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN---LYVKNINDDVDEI 173
V GM L E F ++ D E + N +YVKNI + +
Sbjct: 210 --VNGMLL----------NEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATDE 257
Query: 174 ELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
E ++ F + G ++S + R + G S+GFGFV F N + A A++ LNG F + LYV
Sbjct: 258 EFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVG 317
Query: 233 IAQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 318 RAQKKHEREEELRKSY 333
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 32/241 (13%)
Query: 21 SLYVGDLDSTDLLRLCSALIASIDVHSAMATPT-FIP--------FTVNLASTIDNWKLH 71
SL GD + + + +++ D +A TP+ +P + L ++ L
Sbjct: 20 SLNGGDSNGAPAINTDVSNLSNEDPDTAGPTPSSAVPHPQASASLYVGELDPSVTEAMLF 79
Query: 72 QIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
++FS+ G + S + V +D +S GY +V Y+T A+E+L ++G
Sbjct: 80 ELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNTTTDGEKALEELNYTLIKG------- 130
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
R RI S D + N+++KN++ +D L F+ G I S
Sbjct: 131 -RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 179
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
K+ + G SKG+GFV + + A++AI +NG+L ++K ++V K++R S M
Sbjct: 180 KVAQDESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMK 239
Query: 249 A 249
A
Sbjct: 240 A 240
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D+ KL +IFS++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNFGDDMDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +D+ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRAPGVPIYIKNLDETIDDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-VEVGQGKGFGVVCFSSFEEATKAVDEMNGRIMGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNF------------------GDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ FS+ G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 MDDEKLKEIFSEYGSTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 193 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LY+KN++D +D+ +L+
Sbjct: 253 RDINGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 311 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G +++ + + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 160 KLLKGCKVFVGRFKNRKDREAE------LRSKASEFT------NVYIKNFGGDMDDERLK 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 208 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 267
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 268 KVERQAELKQMF 279
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELR 183
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 193 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LY+KN++D +D+ +L+
Sbjct: 253 RDINGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 311 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G +++ + + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 160 KLLKGCKVFVGRFKNRKDREAE------LRSKASEFT------NVYIKNFGGDMDDERLK 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 208 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 267
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 268 KVERQAELKQMF 279
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELR 183
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+
Sbjct: 159 FIKNLDAAIDNKALHDTFAAFGNILSCKVATDENGNSKGYGFVHYETDEAAAQAIKH--- 215
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L E + ++ D E + N+Y+KNIN +V E
Sbjct: 216 --VNGMLL----------NEKKVYVGYHIPKKDRQSKFEEMKANYTNVYIKNINLEVTEE 263
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E +++FS+ G I+S + R G +GFGFV +S A + + +NG + + LYV
Sbjct: 264 EFREFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKCVEEMNGKEWRGQELYVGR 323
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 324 AQKKHEREEELRKSY 338
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 52/232 (22%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+NL T + ++ + FSK+G+I SS + +GK +G+GFV YST SA +E++
Sbjct: 256 INLEVTEEEFR--EFFSKWGEITSSTLARDAEGKPRGFGFVNYSTHASAAKCVEEMNGKE 313
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE---ILDKNLYVKNINDDVDEIEL 175
G ELY GR Q+ K+ + E+ NLY+KN++D+VD+ +L
Sbjct: 314 WRGQELYV-----GRAQKKHEREEELRKSYEAARLEKQNKYQGVNLYIKNLSDEVDDEKL 368
Query: 176 KQYFSQCGIISSVKIMRTNR---------------------------------------- 195
+ F++ G I+S K+MR
Sbjct: 369 RAMFAEFGPITSAKVMRDTPPEPAKDEKNKENNKESEKEGEKKEGEGEGDKKPEVKKPER 428
Query: 196 --GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G SKGFGFVCF+NPD+A +A+ +N + KPLYVA+AQ K R S L
Sbjct: 429 KLGKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRKEVRKSQLE 480
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y++ A+E+
Sbjct: 71 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNSVADGEKALEE 128
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 129 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGHGNIFIKNLDAAIDNK 170
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ G SKG+GFV + + A +AI +NG+L ++K +YV
Sbjct: 171 ALHDTFAAFGNILSCKVATDENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGY 230
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 231 HIPKKDRQSKFEEMKA 246
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V +++ + +A+
Sbjct: 69 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSL--GYAYVNYNSVADGEKAL 126
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L KP RIM++++ P L T
Sbjct: 127 EELNYTLIKGKP---------------CRIMWSQRDPALRKT 153
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 129/266 (48%), Gaps = 30/266 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + ++F K+G I S+ + +GK +G+GFV + +A A+++L
Sbjct: 222 YVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNE 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+G +LY GR Q+ K + E++ NL+VKN++D +D+
Sbjct: 282 LEFKGQKLYV-----GRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK+ F+ G I+S K+MR G S+GFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 337 KLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 234 AQTKRERTSYL----------RIMYAKQGPGLASTNFP---VHPTLYQRALQ---VYQAP 277
AQ K R + L R +A A P + P +Y + +Q P
Sbjct: 397 AQRKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFMPPPMYYGGIPPRVPFQGP 456
Query: 278 GFRHGGMIPNGFSSPP-----PSPLF 298
+ GM NG + PP P P++
Sbjct: 457 NPQMAGMPKNG-AMPPQQFGRPGPMY 481
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL IDN LH+ FS FG+I S KV ++G S+G+GFV + + A +AIE +
Sbjct: 129 YIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDG 188
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT-EEILDK--NLYVKNINDDVDEI 173
+ E+Y L+V D EE+ K N+YVKNI+ + +
Sbjct: 189 MLMNDQEVYVA---------------LHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQE 233
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + + + G +GFGFV F + A +A++ LN + F + LYV
Sbjct: 234 EFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGR 293
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER L+ Y
Sbjct: 294 AQKKYERLQELKKQY 308
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ L T+ L+ IFS G + S +V S GY +V + E+ AIE+L
Sbjct: 41 YVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLN 100
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L K N+Y+KN++ +D L
Sbjct: 101 YTLIKG--------KPCRIMWSQRDPSLRKKG----------SGNIYIKNLHPAIDNKSL 142
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S K+ G+S+GFGFV F N +A AI ++G+L + + +YVA+
Sbjct: 143 HETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHV 202
Query: 236 TKRERTSYLRIMYAK 250
+K++R S L + AK
Sbjct: 203 SKKDRQSKLEEVKAK 217
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 26/122 (21%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV + V E L FS G +SS+++ R TN S G+ +V F + + +AI
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITN--TSLGYAYVNFHDHEAGPKAI 96
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL---ASTNFPV---HPTLYQRA 270
LN L KP RIM++++ P L S N + HP + ++
Sbjct: 97 EQLNYTLIKGKP---------------CRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKS 141
Query: 271 LQ 272
L
Sbjct: 142 LH 143
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ K N+Y+KN +D+D+ +LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEM--GARAKEF----------TNVYIKNFGEDMDDEKLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G S+++M + G SKGFGFV F ++A RA++ +NG + K +YV AQ
Sbjct: 209 EIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KGERQTELK 277
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL +IF K+G S +V+ GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KEMNGKQVYVG--RAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 311
Query: 177 QYFSQCGIISSVKIM 191
+ FS G I+S K+M
Sbjct: 312 KEFSPFGTITSAKVM 326
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G R RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKG--------RPVRIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + +
Sbjct: 165 DRKVFVGRFKSRKEREAEM 183
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 59/242 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ +++ + ++F KFG+I S+ + +GKS+G+GFV +ST ESA A+E++
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMND 285
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
V +LY GR Q+ K + E+ NLYVKN+ DDVD+
Sbjct: 286 KEVRSQKLYV-----GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDD 340
Query: 174 ELKQYFSQCGIISSVKIMRTNRGI------------------------------------ 197
+L++ F G I+S K+MR +
Sbjct: 341 KLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEE 400
Query: 198 ---------------SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S
Sbjct: 401 EKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRS 460
Query: 243 YL 244
L
Sbjct: 461 QL 462
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 133 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKH--- 189
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KNI+ +V++
Sbjct: 190 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDE 237
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R + G S+GFGFV FS + A A+ +N + LYV
Sbjct: 238 EFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGR 297
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 298 AQKKHEREEELRKQY 312
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+++
Sbjct: 45 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 103 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 144
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G+SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 145 ALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 204
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 205 HISKKDRQSKFEEMKA 220
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 107/192 (55%), Gaps = 15/192 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I + L IFSK+G I S KV ++G+SKG+GFVQ+ +Q+SAL A L+
Sbjct: 108 FVKNLDFSISSSCLESIFSKYGTILSCKVA-GENGRSKGFGFVQFESQDSALVAQTALHD 166
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +L+ + +A+ ++ NLYVKN+++ + E LK
Sbjct: 167 TMLGGKKLHVCKFVKKTERTAAAPCEVFT--------------NLYVKNLDETITEDGLK 212
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS G +SSV IM + G SK FGFV F +PD+A +A++ +NG + K L+V AQ
Sbjct: 213 DMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQR 272
Query: 237 KRERTSYLRIMY 248
K ERT L+ Y
Sbjct: 273 KSERTMILKQEY 284
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 102/177 (57%), Gaps = 7/177 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL TI L +FS GD+ S +++ +GKSK +GFV + + + A A++ +
Sbjct: 198 YVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHEGKSKHFGFVNFKSPDDAKKAVDVMNG 257
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ + L+ +A R E K+L + TE++ NLYVKN+N D+D+ +LK
Sbjct: 258 SVIGSKTLFVG--KAQRKSERTMILKQEYKDLHNRSTEKLRASNLYVKNLNVDIDDKKLK 315
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ FS G I SVK++ N G SK FGFVCF++P+EAN+A+ LNG PL+ ++
Sbjct: 316 EVFSAYGKILSVKVICHNDGTSKQFGFVCFASPEEANKALVALNG-----HPLFFSV 367
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 20/174 (11%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L F G I S ++ + GKS Y +V + A A+ L ++G +
Sbjct: 33 LRAAFYHVGPISSLRLCRCRLTGKSLCYAYVNLYSHAQASRALGLLNHTNLKGKPMRIMW 92
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
+ F NL+VKNLD ++ L+ FS+ G I S
Sbjct: 93 CQRDPFARKTGFANLFVKNLDFSISSSCLE------------------SIFSKYGTILSC 134
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
K+ N G SKGFGFV F + D A A L+ + K L+V K ERT+
Sbjct: 135 KVAGEN-GRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTA 187
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 140 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 196
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KNI+ DV E
Sbjct: 197 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEE 244
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R G S+GFGFV FS + A A++ +N + LYV
Sbjct: 245 EFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGR 304
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 305 AQKKHEREEELRKQY 319
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 58/246 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + ++F KFG+I S+ + Q+GKS+G+GFV +ST ESA A++++
Sbjct: 233 YIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNE 292
Query: 117 ATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEIL--- 157
+ +LY LR A R+++++ + NLYVKNL DDV +E L
Sbjct: 293 KEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLREL 352
Query: 158 --------------DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIM------------ 191
D N+ + E E K+ + SS
Sbjct: 353 FGPYGTITSAKVMRDTNIERTQTPESDKEKENKEATKENEKESSEAEKAEKTEEKPADSG 412
Query: 192 -------------RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
+ G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K
Sbjct: 413 DEKKEDKESKKADKKGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
Query: 239 ERTSYL 244
R S L
Sbjct: 473 VRRSQL 478
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 52 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 110 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 151
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 152 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 211
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 212 HISKKDRQSKFEEMKA 227
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 140 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 196
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KNI+ DV E
Sbjct: 197 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEE 244
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R G S+GFGFV FS + A A++ +N + LYV
Sbjct: 245 EFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGR 304
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 305 AQKKHEREEELRKQY 319
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 58/246 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + ++F KFG+I S+ + Q+GKS+G+GFV +ST ESA A++++
Sbjct: 233 YIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNE 292
Query: 117 ATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEIL--- 157
+ +LY LR A R+++++ + NLYVKNL DDV +E L
Sbjct: 293 KEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLREL 352
Query: 158 --------------DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIM------------ 191
D N+ + E E K+ + SS
Sbjct: 353 FGPYGTITSAKVMRDTNIERTQTPESDKEKENKEATKENEKESSEAEKAEKTEEKPADSG 412
Query: 192 -------------RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
+ G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K
Sbjct: 413 DEKKEDKESKKADKKGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
Query: 239 ERTSYL 244
R S L
Sbjct: 473 VRRSQL 478
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 52 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 110 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 151
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 152 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 211
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 212 HISKKDRQSKFEEMKA 227
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 3/173 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL +IFSK+G S +V+ + GKSKG+GFV + E A A++++
Sbjct: 121 YIKNFGEDMDDEKLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNG 180
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 181 KEMNGKQVYVG--RAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLR 238
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPL
Sbjct: 239 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 290
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 105/192 (54%), Gaps = 19/192 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 29 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM-- 85
Query: 117 ATVEGMELYAPSLRAGRIQ---ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
GM L + GR + E + K N+Y+KN +D+D+
Sbjct: 86 ---NGMLLNDRKVFVGRFKSRKERGAEMGARAKEFT----------NVYIKNFGEDMDDE 132
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK+ FS+ G S+++M G SKGFGFV F ++A RA++ +NG + K +YV
Sbjct: 133 KLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGR 192
Query: 234 AQTKRERTSYLR 245
AQ K ER + L+
Sbjct: 193 AQKKGERQTELK 204
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 27 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 85
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + +
Sbjct: 86 NGMLLNDRKVFVGRFKSRKERGAEM 110
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 113/242 (46%), Gaps = 59/242 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ +++ + ++F KFG+I S+ + +GKS+G+GFV +ST ESA A+E++
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMND 285
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
V +LY GR Q+ K + E+ NLYVKN+ DDVD+
Sbjct: 286 KEVRSQKLYV-----GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDD 340
Query: 174 ELKQYFSQCGIISSVKIMRTNRGI------------------------------------ 197
+L++ F G I+S K+MR +
Sbjct: 341 KLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEE 400
Query: 198 ---------------SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S
Sbjct: 401 KKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRS 460
Query: 243 YL 244
L
Sbjct: 461 QL 462
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 133 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKH--- 189
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KNI+ +V++
Sbjct: 190 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDE 237
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R + G S+GFGFV FS + A A+ +N + LYV
Sbjct: 238 EFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGR 297
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 298 AQKKHEREEELRKQY 312
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+++
Sbjct: 45 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 103 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 144
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G+SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 145 ALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 204
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 205 HISKKDRQSKFEEMKA 220
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 251 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 310
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LY+KN++D +D+ +L+
Sbjct: 311 RDINGQLIFVGRAQK-KVERQAELKQMF-EQLKRERICGCQGVKLYIKNLDDTIDDEKLR 368
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 369 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 426
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 159 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 217
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G +++ + + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 218 KLLKGCKVFVGRFKNRKDREAE------LRSKASEFT------NIYIKNFGGDMDDERLK 265
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 266 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 325
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ M+ +
Sbjct: 326 KVERQAELKQMFEQ 339
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 215
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 216 NGKLLKGCKVFVGRFKNRKDREAELR 241
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 104/199 (52%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 145 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNG 204
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN+D D T+E
Sbjct: 205 MLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTDE--------------- 249
Query: 171 DEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E ++ F + G I+S + R + G S+GFGFV F++ + A A++ LN F + L
Sbjct: 250 ---EFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNLNEKDFKSQKL 306
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 307 YVGRAQKKHEREEELRKQY 325
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 115/241 (47%), Gaps = 52/241 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAI---- 111
+ N+ + + ++F KFG+I S+ + S+ GKS+G+GFV +++ ESA A+
Sbjct: 238 YVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNLN 297
Query: 112 ------EKLYAATVEGMELYAPSLR----AGRIQESASFN--NLYVKNLDDDVTEE---- 155
+KLY + LR A RI++++ + NLY+KNL DD+ +E
Sbjct: 298 EKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRD 357
Query: 156 ------------ILDKNLYVKNINDDVDEI-----------ELKQYFSQCGIISSVKIMR 192
++ NL ++ +D E E K ++ K +
Sbjct: 358 LFSGYGTITSAKVMRDNLAAESSSDSEKEAKSEGKENEPPEESKDEAAEKAETKDTKEAK 417
Query: 193 TNR--------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
T G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S L
Sbjct: 418 TESKKADKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQL 477
Query: 245 R 245
Sbjct: 478 E 478
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 29/216 (13%)
Query: 37 SALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KS 93
S+ A+ HSA + L ++ L ++FS G + S + V +D +S
Sbjct: 43 SSTTATAQPHSASL------YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRS 94
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT 153
GY +V Y+ A+E L ++G R RI S D
Sbjct: 95 LGYAYVNYNNTADGERALEDLNYTLIKG--------RPCRIMWSQR----------DPAL 136
Query: 154 EEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEAN 213
+ N+++KN++ +D L F+ G I S K+ + G SKG+GFV + + A
Sbjct: 137 RKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQ 196
Query: 214 RAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
AI +NG+L + K ++V K++R S M A
Sbjct: 197 NAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKA 232
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 59/243 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ +++ + ++F KFG+I S+ + +GKS+G+GFV +ST ESA A+E++
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMND 285
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
V +LY GR Q+ K + E+ NLYVKN+ DDVD+
Sbjct: 286 KEVRSQKLYV-----GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDD 340
Query: 174 ELKQYFSQCGIISSVKIMRTNRGI------------------------------------ 197
+L++ F G I+S K+MR +
Sbjct: 341 KLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEE 400
Query: 198 ---------------SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S
Sbjct: 401 KKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRS 460
Query: 243 YLR 245
L
Sbjct: 461 QLE 463
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 133 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKH--- 189
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KNI+ +V++
Sbjct: 190 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDE 237
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R + G S+GFGFV FS + A A+ +N + LYV
Sbjct: 238 EFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGR 297
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 298 AQKKHEREEELRKQY 312
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+++
Sbjct: 45 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 103 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 144
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G+SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 145 ALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 204
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 205 HISKKDRQSKFEEMKA 220
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 138/290 (47%), Gaps = 57/290 (19%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N++ + + + ++F K+GD+ SS + Q+GKS+G+GFV ++T E+A A+++L
Sbjct: 243 YVKNISPDVTDNEFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAVDELNG 302
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
G ELY GR Q+ K+ + E+ NLY+KN++DDVD+
Sbjct: 303 NDFRGQELYV-----GRAQKKHEREEELRKSYEAARLEKASKYQGVNLYIKNLDDDVDDD 357
Query: 174 ELKQYFSQCGIISSVKIMRTN--------------------------------------- 194
+L+Q FS+ G I+S K+MR +
Sbjct: 358 KLRQMFSEFGPITSAKVMRDSLQEGEEEVKDQEKDKENQKEAENEAEAESAENAEKKAEK 417
Query: 195 -----RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
G SKGFGFVCFSNPD+A +A+ +N + + KPLYVA+AQ K R S L
Sbjct: 418 KGDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQ 477
Query: 250 KQGPGLASTNFPVHPTLYQRALQ--VYQAPGFRHGGMIPNGFSSPP-PSP 296
+ L + Q+ +Q V+ APG + G IP G P P P
Sbjct: 478 ARN-QLRMQQAAAAAGMPQQFMQPPVFYAPG-QQPGFIPQGGRGMPFPQP 525
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 150 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFVHYETDEAAAQAIKH--- 206
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L E + ++ D E + N+YVKNI+ DV +
Sbjct: 207 --VNGMLL----------NEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNISPDVTDN 254
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G ++S + R G S+GFGFV F+ + A +A++ LNG F + LYV
Sbjct: 255 EFRELFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHEAAYKAVDELNGNDFRGQELYVGR 314
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 315 AQKKHEREEELRKSY 329
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 31/214 (14%)
Query: 47 SAMATPTFIPFTVNLAS--------TIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKG 95
++ TPT P N AS ++ L ++FS+ G + S + V +D +S G
Sbjct: 44 ASAPTPTAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVAS--IRVCRDAVTRRSLG 101
Query: 96 YGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE 155
Y +V Y++ A+E+L ++G R RI S D +
Sbjct: 102 YAYVNYNSTPDGEKALEELNYTPIKG--------RPCRIMWSQR----------DPALRK 143
Query: 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRA 215
N+++KN++ +D L F+ G I S K+ + G SKG+GFV + + A +A
Sbjct: 144 TGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFVHYETDEAAAQA 203
Query: 216 INTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
I +NG+L ++K +YV K++R S M A
Sbjct: 204 IKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKA 237
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 101/195 (51%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 141 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 197
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+YVKNI+ +V +
Sbjct: 198 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDE 245
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S I R + G S+GFGFV + + + A A++ LN FH + LYV
Sbjct: 246 EFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGR 305
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 306 AQKKHEREEELRRQY 320
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 110/235 (46%), Gaps = 48/235 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F KFGDI S+ + GKS+G+GFV Y E+A A++ L
Sbjct: 234 YVKNIDPEVTDEEFRELFGKFGDITSATISRDDSGKSRGFGFVNYVDHENAQTAVDDLND 293
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
G +LY + +E L+ + + NLYVKN+ DDVD+ +L+
Sbjct: 294 KDFHGQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGV--NLYVKNLTDDVDDEKLR 351
Query: 177 QYFSQCGIISSVKIMR----------------------------TNR------------- 195
+ FS G I+S K+MR TN
Sbjct: 352 ELFSAFGTITSAKVMRDTVGAGSDSEKEETKESSEEVEEPKEEETNAKTEDEDKTDAKKS 411
Query: 196 -----GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S L
Sbjct: 412 DKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLE 466
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 53 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 110
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 111 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 152
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 153 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 212
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 213 HISKKDRQSKFEEMKA 228
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FS++G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 193 YIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEAAKRAVEEMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A +++ + + + LYVKN++D VD+ +L+
Sbjct: 253 KDMNGQLVFVGRAQK-KVERQAELKHMF-EQMKKERIRRCQGVKLYVKNLDDTVDDEQLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I+ VK+M+ G S+GFG +CFS+P+EA +A+ +NG + K L +A+AQ
Sbjct: 311 KEFSSFGSITRVKVMKEE-GYSRGFGLICFSSPEEAAKALTEMNGRVLGSKALSIALAQ 368
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++DN L++ FS FG I SSKV+ S D SKGY FV + +Q +A AIE++
Sbjct: 101 FVKNLDRSVDNKTLYEHFSGFGKILSSKVM-SDDQGSKGYAFVHFQSQSAANCAIEQMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++ + + +E+ +++ + T N+Y+KN DD+D+ L+
Sbjct: 160 KVINDRPVFVAPFKPRKDREAE------LRSRASEFT------NVYIKNFGDDMDDERLQ 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A RA+ +NG + + ++V AQ
Sbjct: 208 GVFSRYGKTLSVKVMTDSSGKSKGFGFVSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQK 267
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 268 KVERQAELKHMF 279
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN++ VD L ++FS G I S K+M ++G SKG+ FV F + AN AI +
Sbjct: 99 NVFVKNLDRSVDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQSQSAANCAIEQM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG + + +P++VA + +++R + LR
Sbjct: 158 NGKVINDRPVFVAPFKPRKDREAELR 183
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 112/192 (58%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + +Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKSLYECFSAFGKILSSKVM-SDDRGSKGYAFVHFQSQSAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ +++ ++ + +E+ ++N + T N+Y+KN DD+D+ L+
Sbjct: 160 KFLKDCKVFVGRFKSRKDREAE------LRNKASEFT------NVYIKNFGDDMDDERLR 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I SVK+M + G S+GFGFV F + + A +A+ +NG + +P++V AQ
Sbjct: 208 EVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQK 267
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 268 KVERQAELKQMF 279
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 107/179 (59%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++FS +G I S KV+ + GKS+G+GFV + + E+A A+E++
Sbjct: 193 YIKNFGDDMDDERLREVFSTYGRILSVKVMTNSCGKSRGFGFVSFDSHEAARKAVEEMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G ++ + +++ A ++ + L + LY+KN+++++D+ +L+
Sbjct: 253 KEVNGQPIFVGRAQK-KVERQAELKQMF-EQLKKERIRGCQGAKLYIKNLDENIDDEKLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G IS VK+M+ G SKGFG +CFS+ ++A RA+ +NG + KPL +A+AQ
Sbjct: 311 KEFSSFGSISRVKVMQEE-GQSKGFGLICFSSSEDAARAMTVMNGRILGSKPLNIALAQ 368
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L + FS G I S K+M +RG SKG+ FV F + A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKSLYECFSAFGKILSSKVMSDDRG-SKGYAFVHFQSQSAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG ++V +++++R + LR
Sbjct: 158 NGKFLKDCKVFVGRFKSRKDREAELR 183
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS+ G + S++I R T R + G+ +V F +A +A+
Sbjct: 11 SLYVGDLHSDVTEDLLFKKFSRVGPVLSIRICRDLVTRRSL--GYAYVNFLQLADAQKAL 68
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLR 245
+T+N + K + + +Q R +YLR
Sbjct: 69 DTMNFDVVKGKAIRLMWSQ----RDAYLR 93
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 149 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNG 208
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN++ DVT+E
Sbjct: 209 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE--------------- 253
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G I+S + R N G S+GFGFV FS+ + A+ A+ LN + L
Sbjct: 254 ---EFRSLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKL 310
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 311 YVGRAQKKHEREEELRKQY 329
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 117/253 (46%), Gaps = 67/253 (26%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ N+ + + + +F K+G+I S+ +S+D GKS+G+GFV +S E+A A+E
Sbjct: 242 YVKNVEQDVTDEEFRSLFEKYGEITSA--TLSRDNETGKSRGFGFVNFSDHEAASAAVEG 299
Query: 114 LYAATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEIL 157
L ++G +LY LR A RI++++ + NLY+KNL DD+ +E L
Sbjct: 300 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 359
Query: 158 DKNLY---------------------------------------------VKNINDDVDE 172
+ L+ + +D+ E
Sbjct: 360 -RELFSSYGNITSAKVMREAISDVPADAEKDKEADKEKAKKETGDKPEDKAETKSDEKSE 418
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+ K G K + + G SKGFGFVCFSNPDEA++A+ +N + H KPLYVA
Sbjct: 419 DKSKSEEKTEGKTDGAKTEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVA 478
Query: 233 IAQTKRERTSYLR 245
+AQ K R S L
Sbjct: 479 LAQRKDVRKSQLE 491
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 61 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 119 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 160
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 161 ALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 220
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 221 HIAKKDRQSKFEEMKA 236
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 136/269 (50%), Gaps = 26/269 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ ++ + L F ++G I S+ V+ DGKSK +GFV + ++A A+E L
Sbjct: 206 YVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNG 265
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y +E L +K + +E +DK NLY+KN++D V +
Sbjct: 266 KKFDDKEWYVGKALKKYERE------LELKERHEQSMKETVDKFYGANLYLKNLDDSVTD 319
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS+ G ++S KI+R +GIS+G GFV FS P+EA RA+ +NG + KPLYVA
Sbjct: 320 EKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVA 379
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQA--PGFRHGGMIPNGFS 290
AQ K ER + L +++ P T P+ P L Y A PG M +
Sbjct: 380 PAQKKEERKARLPAQFSQVRP---VTMAPIAPR-----LPFYPAGVPGMGQQIM----YG 427
Query: 291 SPPPSPLFLTRAGQAAANNLTNGNQRAAA 319
PP+ F+++AG L G + A
Sbjct: 428 QAPPA--FISQAGFGYPQQLVPGMRPGGA 454
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 96/189 (50%), Gaps = 14/189 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ L+ FS FG+I S K+ + G SKGYGFVQ+ +ESA +AI+KL
Sbjct: 115 FIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKL-- 172
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
GM L + G Q K D+ N+YVKN+++ V + +LK
Sbjct: 173 ---NGMLLNDKPVYVGHFQR---------KQDRDNALSNAKFNNVYVKNLSESVTDDDLK 220
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G I+S +MR G SK FGFV F N D A A+ LNG F K YV A
Sbjct: 221 NTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALK 280
Query: 237 KRERTSYLR 245
K ER L+
Sbjct: 281 KYERELELK 289
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 101/208 (48%), Gaps = 25/208 (12%)
Query: 40 IASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGY 96
+A+ V + + T + + +L + + +L+ +F++ G + S ++ + SQ +S GY
Sbjct: 12 VAAAPVPNQLTTTSL--YVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQ--QSLGY 67
Query: 97 GFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI 156
G+V +S A A++ L + + RI S D +
Sbjct: 68 GYVNFSNPHDAAKAMDVLNFTPLNNKPI--------RIMYSHR----------DPSVRKS 109
Query: 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
N+++KN++ +D L FS G I S KI G+SKG+GFV F N + A AI
Sbjct: 110 GAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAI 169
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYL 244
+ LNG+L + KP+YV Q K++R + L
Sbjct: 170 DKLNGMLLNDKPVYVGHFQRKQDRDNAL 197
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 16/105 (15%)
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPD 210
V ++ +LYV +++ DV + +L F+Q G + SV+I R S G+G+V FSNP
Sbjct: 17 VPNQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPH 76
Query: 211 EANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+A +A++ LN + KP +RIMY+ + P +
Sbjct: 77 DAAKAMDVLNFTPLNNKP---------------IRIMYSHRDPSV 106
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+ +
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 60
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
+++ ++ + +E+ L E N+Y+KN +D+D+ LK+ F
Sbjct: 61 NDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLKELF 108
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
+ G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ K E
Sbjct: 109 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 168
Query: 240 RTSYLRIMY 248
R + L+ +
Sbjct: 169 RQTELKRKF 177
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 100/195 (51%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 141 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 197
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+YVKNI+ +V +
Sbjct: 198 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNVYVKNIDPEVTDE 245
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S I R + G S+GFGFV + + A A++ LN FH + LYV
Sbjct: 246 EFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGR 305
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 306 AQKKHEREEELRRQY 320
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 110/237 (46%), Gaps = 50/237 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F K+GDI S+ + GKS+G+GFV Y ++A +A+++L
Sbjct: 234 YVKNIDPEVTDEEFRELFGKYGDITSATISRDDSGKSRGFGFVNYVDHQNAQSAVDELND 293
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+LY + +E L+ + + NLYVKN+ DDVD+ +L+
Sbjct: 294 KDFHSQKLYVGRAQKKHEREEELRRQYEAARLEKASKYQGV--NLYVKNLTDDVDDDKLR 351
Query: 177 QYFSQCGIISSVKIMRTNRGI--------------------------------------- 197
+ FS G I+S K+MR G+
Sbjct: 352 ELFSPFGTITSAKVMRDTVGVSSDSDKEEGKEASEKEGEEASEKEETKVKAEDEEKTETK 411
Query: 198 ---------SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S L
Sbjct: 412 KPEKKVFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLE 468
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 53 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 110
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 111 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 152
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 153 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 212
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 213 HISKKDRQSKFEEMKA 228
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 150 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFVHYETDEAASQAIKH--- 206
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + G ++ D E + N+YVKNI DV E
Sbjct: 207 --VNGMLLNEKKVYVGH----------HIPKKDRQSKFEEMKANFTNVYVKNIAADVTED 254
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ +Q F + G ++S + R G S+GFGFV F+ + A +A++ LN FH + LYV
Sbjct: 255 DFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAVDELNNKDFHGQDLYVGR 314
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 315 AQKKHEREEELRKSY 329
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 133/302 (44%), Gaps = 75/302 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+A+ + Q+F K+GD+ SS + Q+GKS+G+GFV ++T ESA A+++L
Sbjct: 243 YVKNIAADVTEDDFRQLFEKYGDVTSSSLARDQEGKSRGFGFVNFTTHESAFKAVDELNN 302
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN++DDVD+
Sbjct: 303 KDFHGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLDDDVDDD 357
Query: 174 ELKQYFSQCGIISSVKIMR---------------------------------------TN 194
+L++ F G I+S K+MR T
Sbjct: 358 KLREMFKDFGSITSAKVMRETPTEGDEDKKEKDESDKENQEEVKEEVKEESKEESKDETK 417
Query: 195 RG-------------ISKGFGF--VCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G + K GF VCFSNPD+A +A+ +N +F+ KPLYVA+AQ K
Sbjct: 418 EGEEDKKAEKKSDKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDV 477
Query: 240 RTSYLRI-------MYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
R S L + +Q +A P Y + VY APG + G M G P
Sbjct: 478 RKSQLEASIQARNQLRMQQAAAVAGM-----PQQYMQP-PVYFAPGQQPGYMPQGGRGVP 531
Query: 293 PP 294
P
Sbjct: 532 FP 533
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+ A+E+
Sbjct: 62 YVGELDPSVTEAMLFELFSQIGAVAS--IRVCRDAVTRRSLGYAYVNYNATPDGEKALEE 119
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 120 LNYTIIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 161
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 162 ALHDTFAAFGNILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 221
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 222 HIPKKDRQSKFEEMKA 237
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 149 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNG 208
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN++ DVT+E
Sbjct: 209 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE--------------- 253
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G I+S + R N G S+GFGFV FS+ + A+ A+ LN + L
Sbjct: 254 ---EFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKL 310
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 311 YVGRAQKKHEREEELRKQY 329
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 118/254 (46%), Gaps = 71/254 (27%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ N+ + + + +F K+G+I S+ +S+D GKS+G+GFV +S E+A A+E
Sbjct: 242 YVKNVEQDVTDEEFRGLFEKYGEITSA--TLSRDNETGKSRGFGFVNFSDHEAASAAVEA 299
Query: 114 LYAATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEIL 157
L ++G +LY LR A RI++++ + NLY+KNL DD+ +E L
Sbjct: 300 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 359
Query: 158 ----------------------------------------------DKNLYVKNINDDVD 171
++ K+ ++D
Sbjct: 360 RELFSSYGNITSAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKSEEKGEAKSESEDKS 419
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ E K G S K + + G SKGFGFVCFSNPDEA++A+ +N + H KPLYV
Sbjct: 420 KSEEKTE----GKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYV 475
Query: 232 AIAQTKRERTSYLR 245
A+AQ K R S L
Sbjct: 476 ALAQRKDVRKSQLE 489
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 61 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 119 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 160
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 161 ALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 220
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 221 HIAKKDRQSKFEEMKA 236
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 149 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNG 208
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN++ DVT+E
Sbjct: 209 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE--------------- 253
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G I+S + R N G S+GFGFV FS+ + A+ A+ LN + L
Sbjct: 254 ---EFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKL 310
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 311 YVGRAQKKHEREEELRKQY 329
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 118/250 (47%), Gaps = 64/250 (25%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ N+ + + + +F K+G+I S+ +S+D GKS+G+GFV +S E+A A+E
Sbjct: 242 YVKNVEQDVTDEEFRGLFEKYGEITSA--TLSRDNETGKSRGFGFVNFSDHEAASAAVEA 299
Query: 114 LYAATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEIL 157
L ++G +LY LR A RI++++ + NLY+KNL DD+ +E L
Sbjct: 300 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 359
Query: 158 DKNLY---------------------------------VKNINDDVDEIELKQYFSQ--- 181
+ L+ K D +E + S+
Sbjct: 360 -RELFSSYGNITSAKVMREAIVDVPAETEKGKEADKEKAKEAGDKSEEKGESKSESEDKS 418
Query: 182 ------CGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
G S K + + G SKGFGFVCFSNPDEA++A+ +N + H KPLYVA+AQ
Sbjct: 419 KSEEKSEGKTESAKPEKRHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQ 478
Query: 236 TKRERTSYLR 245
K R S L
Sbjct: 479 RKDVRKSQLE 488
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 61 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 119 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 160
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 161 ALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 220
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 221 HIAKKDRQSKFEEMKA 236
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 106/187 (56%), Gaps = 3/187 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 193 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LYVKN++D +D+ +L+
Sbjct: 253 RDINGQLIFVARAQK-KVERQAELKQMF-EQLKKERIRGCQVVKLYVKNLDDTIDDEKLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 311 NEFSSFGSISRVKVMQ-EEGQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQC 369
Query: 237 KRERTSY 243
R +
Sbjct: 370 SELRLCH 376
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 111/194 (57%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G +++ ++ + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 160 KLLQGCKVFVGRFKSRKDREAE------LRSKASEFT------NVYIKNFGGDMDDERLK 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++VA AQ
Sbjct: 208 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQK 267
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ M+ +
Sbjct: 268 KVERQAELKQMFEQ 281
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V +++++R + LR
Sbjct: 158 NGKLLQGCKVFVGRFKSRKDREAELR 183
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 102/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG+I S K+ + GKSKG+GFV + +A+ A++ +
Sbjct: 141 FIKNLHPDIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAING 200
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G E+Y + + +ES A+F N+YVKN+D D E+
Sbjct: 201 MMLNGREVYVAQHVSKKDRESKLEEVKANFTNVYVKNVDVDTPED--------------- 245
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E FS+ G I+S+ + + + G +GFGF+ F N D+A +A+ LN + F + LY
Sbjct: 246 ---EFTALFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLY 302
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER L+ Y
Sbjct: 303 VGRAQKKYERLQELKKQY 320
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 97/175 (55%), Gaps = 8/175 (4%)
Query: 73 IFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAG 132
+FSK+G I S + +GK +G+GF+ + + A A+E+L +G +LY G
Sbjct: 250 LFSKYGPITSIAMEKDSEGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYV-----G 304
Query: 133 RIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEIELKQYFSQCGIISSVK 189
R Q+ K + E++ NL+VKN++D +D+ +L+ F+ G I+S K
Sbjct: 305 RAQKKYERLQELKKQYEASRLEKLAKYQGVNLFVKNLDDSIDDEKLEAEFAPFGSITSAK 364
Query: 190 IMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
+MR G SK FGFVCFS P+EA +AI N + KPLYVAIAQ K R S L
Sbjct: 365 VMRNEEGKSKNFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQL 419
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ L ++ L+ IFS G + S +V K S GY +V ++ ES AIEKL
Sbjct: 53 YVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGRTAIEKLN 112
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ ++G + RI S L K N+++KN++ D+D L
Sbjct: 113 YSPIKG--------KPCRIMWSQRDPALRKKGAG----------NIFIKNLHPDIDNKAL 154
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S KI G SKGFGFV F + A A++ +NG++ + + +YVA
Sbjct: 155 HDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHV 214
Query: 236 TKRERTSYLRIMYA 249
+K++R S L + A
Sbjct: 215 SKKDRESKLEEVKA 228
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ KL F+ FG I S+KV+ +++GKSK +GFV +ST E A AI +
Sbjct: 337 FVKNLDDSIDDEKLEAEFAPFGSITSAKVMRNEEGKSKNFGFVCFSTPEEATKAITEKNQ 396
Query: 117 ATVEGMELY 125
V G LY
Sbjct: 397 QIVAGKPLY 405
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 165 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNG 224
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN++ DVT+E
Sbjct: 225 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE--------------- 269
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G I+S + R N G S+GFGFV FS+ + A+ A+ LN + L
Sbjct: 270 ---EFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKL 326
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 327 YVGRAQKKHEREEELRKQY 345
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 116/250 (46%), Gaps = 65/250 (26%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ N+ + + + +F K+G+I S+ +S+D GKS+G+GFV +S E+A A+E
Sbjct: 258 YVKNVEQDVTDEEFRGLFEKYGEITSA--TLSRDNETGKSRGFGFVNFSDHEAASAAVEA 315
Query: 114 LYAATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEIL 157
L ++G +LY LR A RI++++ + NLY+KNL DD+ +E L
Sbjct: 316 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 375
Query: 158 DKNLYV-------------------------------------------KNINDDVDEIE 174
+ L+ K + E +
Sbjct: 376 -RELFSSYGNITSAKVMREAIVDVPAETEKDKEADKEKAKKETGDKSEEKGESKSESEDK 434
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
K G S K + + G SKGFGFVCFSNPDEA++A+ +N + H KPLYVA+A
Sbjct: 435 SKSEEKTEGKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALA 494
Query: 235 QTKRERTSYL 244
Q K R S +
Sbjct: 495 QRKDVRKSQV 504
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 77 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 134
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 135 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 176
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 177 ALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 236
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 237 HIAKKDRQSKFEEMKA 252
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 149 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNG 208
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN++ DVT+E
Sbjct: 209 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE--------------- 253
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G I+S + R N G S+GFGFV FS+ + A+ A+ LN + L
Sbjct: 254 ---EFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKL 310
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 311 YVGRAQKKHEREEELRKQY 329
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 116/250 (46%), Gaps = 65/250 (26%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ N+ + + + +F K+G+I S+ +S+D GKS+G+GFV +S E+A A+E
Sbjct: 242 YVKNVEQDVTDEEFRGLFEKYGEITSA--TLSRDNETGKSRGFGFVNFSDHEAASAAVEA 299
Query: 114 LYAATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEIL 157
L ++G +LY LR A RI++++ + NLY+KNL DD+ +E L
Sbjct: 300 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 359
Query: 158 DKNLYV-------------------------------------------KNINDDVDEIE 174
+ L+ K + E +
Sbjct: 360 -RELFSSYGNITSAKVMREAIVDVPAETEKDKEADKEKAKKEGGDKSEEKGESKSESEDK 418
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
K G S K + + G SKGFGFVCFSNPDEA++A+ +N + H KPLYVA+A
Sbjct: 419 SKSEEKTEGKTESTKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALA 478
Query: 235 QTKRERTSYL 244
Q K R S +
Sbjct: 479 QRKDVRKSQV 488
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 61 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 119 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 160
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 161 ALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 220
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 221 HIAKKDRQSKFEEMKA 236
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 149 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNG 208
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN++ DVT+E
Sbjct: 209 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE--------------- 253
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G I+S + R N G S+GFGFV FS+ + A+ A+ LN + L
Sbjct: 254 ---EFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKL 310
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 311 YVGRAQKKHEREEELRKQY 329
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 118/254 (46%), Gaps = 71/254 (27%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ N+ + + + +F K+G+I S+ +S+D GKS+G+GFV +S E+A A+E
Sbjct: 242 YVKNVEQDVTDEEFRGLFEKYGEITSA--TLSRDNETGKSRGFGFVNFSDHEAASAAVEA 299
Query: 114 LYAATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEIL 157
L ++G +LY LR A RI++++ + NLY+KNL DD+ +E L
Sbjct: 300 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 359
Query: 158 ----------------------------------------------DKNLYVKNINDDVD 171
++ K+ ++D
Sbjct: 360 RELFSSYGNITSAKVMREAIVDAPAEAEKDKEADKEKAKKEAGDKSEEKGEAKSESEDKS 419
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ E K G S K + + G SKGFGFVCFSNPDEA++A+ +N + H KPLYV
Sbjct: 420 KSEEKTE----GKTESAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYV 475
Query: 232 AIAQTKRERTSYLR 245
A+AQ K R S L
Sbjct: 476 ALAQRKDVRKSQLE 489
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 61 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 119 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 160
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 161 ALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 220
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 221 HIAKKDRQSKFEEMKA 236
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 112/217 (51%), Gaps = 34/217 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + + + +F FG I S+ + D G S+G+GFV +S+ E+A A++ L+
Sbjct: 235 YVKNIDPEVSDDEFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVDALH 294
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
++G L+ GR Q+ K + E+ NLYVKN++D++D+
Sbjct: 295 ETELKGQALFV-----GRAQKKHEREEELRKQYEAARIEKASKYQGVNLYVKNLDDEIDD 349
Query: 173 IELKQYFSQCGIISSVKIMRTN-------------------------RGISKGFGFVCFS 207
L+Q FS G I+S K+MR + +G SKGFGFVCFS
Sbjct: 350 ERLRQEFSPYGTITSAKVMRDSLDSPKEKDGEESKVGEPEEKATDKKQGKSKGFGFVCFS 409
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
NPDEA++A+ +N + + KPLYVA+AQ K R S L
Sbjct: 410 NPDEASKAVAEMNQRMVNGKPLYVALAQRKDVRKSQL 446
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 100/199 (50%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A NAI+ +
Sbjct: 142 FIKNLDIAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNG 201
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + E A+F N+YVKN+D +V+++
Sbjct: 202 MLLNEKKVYVGHHIPKKERQSKFDEMKANFTNVYVKNIDPEVSDD--------------- 246
Query: 171 DEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F G I+S + R + G S+GFGFV FS+ + A A++ L+ + L
Sbjct: 247 ---EFRTLFENFGQITSASLARDGDSGTSRGFGFVNFSSHEAAAAAVDALHETELKGQAL 303
Query: 230 YVAIAQTKRERTSYLRIMY 248
+V AQ K ER LR Y
Sbjct: 304 FVGRAQKKHEREEELRKQY 322
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E+
Sbjct: 54 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALEE 111
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 112 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGHGNVFIKNLDIAIDNK 153
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K +YV
Sbjct: 154 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYVGH 213
Query: 234 AQTKRERTSYLRIMYA 249
K+ER S M A
Sbjct: 214 HIPKKERQSKFDEMKA 229
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 77 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNG 136
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN++ DVT+E
Sbjct: 137 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNIYVKNVEQDVTDE--------------- 181
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G I+S + R N G S+GFGFV FS+ + A+ A+ LN + L
Sbjct: 182 ---EFRALFEKYGDITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKL 238
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 239 YVGRAQKKHEREEELRKQY 257
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 117/249 (46%), Gaps = 63/249 (25%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ N+ + + + +F K+GDI S+ +S+D GKS+G+GFV +S E+A A+E
Sbjct: 170 YVKNVEQDVTDEEFRALFEKYGDITSA--TLSRDNETGKSRGFGFVNFSDHEAASAAVEG 227
Query: 114 LYAATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEIL 157
L ++G +LY LR A RI++++ + NLY+KNL DD+ +E L
Sbjct: 228 LNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKL 287
Query: 158 -----------------DKNLYVKNINDDVDEIELKQYFSQCGIISS------------- 187
+ V +D E + ++ + G +
Sbjct: 288 RELFSSYGNITSAKVMREATAEVPTESDKDKEADKEKAKGEAGEKTEEGPEGKTDDKSEE 347
Query: 188 ------------VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K + + G SKGFGFVCFSNPDEA++A+ +N + H KPLYVA+AQ
Sbjct: 348 KTEEKTEGKTEGAKPEKKHLGKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQ 407
Query: 236 TKRERTSYL 244
K R S L
Sbjct: 408 RKDVRKSQL 416
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 23/183 (12%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126
L+++FS G + S + V +D +S GY +V Y+ A+E L ++G
Sbjct: 2 LYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG----- 54
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIIS 186
R RI S D + N+++KN++ +D L F+ G I
Sbjct: 55 ---RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 101
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRI 246
S K+ + G SKG+GFV + + A AI +NG+L ++K ++V K++R S
Sbjct: 102 SCKVAQDEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 161
Query: 247 MYA 249
M A
Sbjct: 162 MKA 164
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 16/213 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F+K+G I S V+ S +GKSKG+GFV ++ E A A++ L
Sbjct: 216 YVKNFGEHYNKDTLEKLFAKYGTITSCDVMTS-EGKSKGFGFVAFAEPEEAEAAVQALND 274
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ VEG +L RA + S + +K + E + K NLYVKN+++ VD+
Sbjct: 275 SPVEGSDLKLHVCRA----QKKSERHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDD 330
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK+ F G I+S K+M G SKGFGFVCF P+EA A++ +N + KPLYVA
Sbjct: 331 EALKKQFESFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVSEMNSKMVCSKPLYVA 390
Query: 233 IAQTKRERTSYLRIMYAKQGPGLAS----TNFP 261
+AQ K +R + L Y ++ LAS TN P
Sbjct: 391 LAQRKEDRRAQLASQYMQR---LASMRMHTNVP 420
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 106/191 (55%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + ++G SKGYGFV + T+E+A NAI+K
Sbjct: 123 FIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQK--- 179
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ Q A N + L + + N+YVKN + ++ L+
Sbjct: 180 --VNGMLLAGKKVFVGKFQPRAQRN----RELGETAKKFT---NVYVKNFGEHYNKDTLE 230
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG--ILFHQKPLYVAIA 234
+ F++ G I+S +M T+ G SKGFGFV F+ P+EA A+ LN + L+V A
Sbjct: 231 KLFAKYGTITSCDVM-TSEGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRA 289
Query: 235 QTKRERTSYLR 245
Q K ER + L+
Sbjct: 290 QKKSERHAELK 300
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ G SKG+GFV F + A AI +
Sbjct: 121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEEGSSKGYGFVHFETEEAAQNAIQKV 180
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L K ++V Q + +R L
Sbjct: 181 NGMLLAGKKVFVGKFQPRAQRNREL 205
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDEANRAINT 218
+LYV +++ DV+E L + FS G + S+++ R N +S G+ +V F P +A RA++T
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 219 LNGILFHQKPLYVAIAQ 235
+N H KP+ + +Q
Sbjct: 93 MNFEALHGKPMRIMWSQ 109
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 109/199 (54%), Gaps = 10/199 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ T L++ F +FG I S V+ DGKS+ +GFV + + A A E L
Sbjct: 207 FVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEALNG 266
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E + G+ Q+ + +K + +E DK NLY+KN++D + +
Sbjct: 267 KKFDDKEWFV-----GKAQKKYE-REVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGD 320
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
++K+ FS G I+S K+MR GIS+G GFV FS P+EA+RA+ +NG + KPLYVA
Sbjct: 321 EKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVA 380
Query: 233 IAQTKRERTSYLRIMYAKQ 251
+AQ K +R + L + Q
Sbjct: 381 LAQRKEDRRARLSFLKCDQ 399
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 101/190 (53%), Gaps = 16/190 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV G+SKGYGFVQ+ ++E+A AIEKL
Sbjct: 116 FIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEKLNG 175
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ ++Y P LR K D T++ N++VKN+++ E +L
Sbjct: 176 MLLNDKQVYVGPFLR---------------KQERDTATDKTRFNNVFVKNLSETTAEEDL 220
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F + G I+SV +MR G S+ FGFV F N D+A +A LNG F K +V AQ
Sbjct: 221 NKAFGEFGTITSVVVMRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQ 280
Query: 236 TKRERTSYLR 245
K ER L+
Sbjct: 281 KKYEREVELK 290
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 24/204 (11%)
Query: 44 DVHSAMATPTFIP---FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFV 99
+V+ P F+ + +L + + + +L+ +F++ G + S +V +S GYG+V
Sbjct: 12 NVNGGANNPNFVTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYV 71
Query: 100 QYSTQESALNAIEKLYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILD 158
YS + A A+E L V G + S R +++S +
Sbjct: 72 NYSNPQDAARALEVLNFTPVNGSPIRVMYSHRDPSVRKSGA------------------- 112
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
N+++KN++ +D L FS G I S K+ G SKG+GFV F + + A +AI
Sbjct: 113 GNIFIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYGFVQFDSEEAAQKAIEK 172
Query: 219 LNGILFHQKPLYVAIAQTKRERTS 242
LNG+L + K +YV K+ER +
Sbjct: 173 LNGMLLNDKQVYVGPFLRKQERDT 196
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 110/213 (51%), Gaps = 23/213 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F+K+G I S V+ S DGKSKG+GFV ++ E A A++ L
Sbjct: 243 YVKNFGDHYNKETLEKLFAKYGAITSCDVMTS-DGKSKGFGFVAFAQPEEAEAAVQALND 301
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ V+G +L RA + E + +K + E + K NLYVKN+++ VD+
Sbjct: 302 SAVDGSDLKLHVCRAQKKSE----RHAELKKKHEQHKVERMQKYQGVNLYVKNLDESVDD 357
Query: 173 IELKQYFSQCGIISSVKI--------------MRTNRGISKGFGFVCFSNPDEANRAINT 218
LK+ F G I+S K+ M G SKGFGFVCF P+EA A+
Sbjct: 358 EALKKQFENFGNITSAKVGLVPLEFFISLFQVMTDENGRSKGFGFVCFEKPEEATTAVTE 417
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
+N + KPLYVA+AQ K +R + L Y ++
Sbjct: 418 MNSKMVCSKPLYVALAQRKEDRRAQLASQYMQR 450
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 105/202 (51%), Gaps = 26/202 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV-----------VSQDGKSKGYGFVQYSTQE 105
F NL IDN ++ FS FG+I S KV + +G SKGYGFV + T+E
Sbjct: 139 FIKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFETEE 198
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
+A NAI+K V GM L + G+ Q A N + L + + N+YVKN
Sbjct: 199 AAQNAIQK-----VNGMLLAGKKVFVGKFQPRAQRN----RELGETAKKFT---NVYVKN 246
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN--GIL 223
D ++ L++ F++ G I+S +M T+ G SKGFGFV F+ P+EA A+ LN +
Sbjct: 247 FGDHYNKETLEKLFAKYGAITSCDVM-TSDGKSKGFGFVAFAQPEEAEAAVQALNDSAVD 305
Query: 224 FHQKPLYVAIAQTKRERTSYLR 245
L+V AQ K ER + L+
Sbjct: 306 GSDLKLHVCRAQKKSERHAELK 327
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKI------MRT-----NRGISKGFGFVCFSN 208
N+++KN++ +D + FS G I S K+ ++T + G SKG+GFV F
Sbjct: 137 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVTFPIEHLKTVVAIDDEGSSKGYGFVHFET 196
Query: 209 PDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
+ A AI +NG+L K ++V Q + +R L
Sbjct: 197 EEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL 232
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 17/93 (18%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDE------- 211
+LYV +++ DV+E L + FS G + S+++ R N +S G+ +V F P +
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADGKSFFQF 92
Query: 212 ---------ANRAINTLNGILFHQKPLYVAIAQ 235
A RA++T+N H KP+ + +Q
Sbjct: 93 MSFLTFLITAERAMDTMNFEALHGKPMRIMWSQ 125
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 136/254 (53%), Gaps = 28/254 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ + +++ L ++F K+G I S +V++ +DGK +G+GFV + ESA +A+++L
Sbjct: 10 YVKDFGDELNDETLKEMFEKYGTITSHRVMI-KDGKGRGFGFVAFENPESAEHAVQELNG 68
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ EG LY GR Q+ + +K + + E L + NLYVKN++D +D
Sbjct: 69 KELGEGKILYV-----GRAQKKNE-RQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSID 122
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS-NPDEANRAINTLNGILFHQKPLY 230
+ L++ FS G I+S K+M G SKGFGFV FS + +EA +A+ +NG + KPLY
Sbjct: 123 DERLRKEFSPFGTITSAKVM-LEEGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLY 181
Query: 231 VAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFS 290
VA+AQ +R ++L Y ++ +A+ Q Q++Q PG G +P +
Sbjct: 182 VALAQRTEDRKAHLASQYMQR---MANMRM-------QHMGQIFQ-PGGNGGYYVP---T 227
Query: 291 SPPPSPLFLTRAGQ 304
P P F + Q
Sbjct: 228 LPQPQRFFSKQVSQ 241
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+YVK+ D++++ LK+ F + G I+S ++M + G +GFGFV F NP+ A A+ L
Sbjct: 8 NVYVKDFGDELNDETLKEMFEKYGTITSHRVMIKD-GKGRGFGFVAFENPESAEHAVQEL 66
Query: 220 NGI-LFHQKPLYVAIAQTKRERTSYLRIMYAK 250
NG L K LYV AQ K ER L+ + +
Sbjct: 67 NGKELGEGKILYVGRAQKKNERQMELKRRFEQ 98
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ +G SKGYGFV Y + +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ L+ ++ + +E+ L D TE N+Y+KN DDVD+ +L+
Sbjct: 160 KLLRESTLFVARFKSRKDREA---------ELRDKPTEFT---NVYIKNFGDDVDDEKLR 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS+ G SVK+M+ G SKGFGFV F + + A A+ +NG + + ++V AQ
Sbjct: 208 EVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQK 267
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ M+ +
Sbjct: 268 KVERQAELKEMFEQ 281
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 102/179 (56%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL ++FSK+G S KV+ GKSKG+GFV + + E+A NA+E +
Sbjct: 193 YIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDATGKSKGFGFVSFDSHEAAKNAVEDMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + + + K LY+KN++D +D+ L+
Sbjct: 253 QDINGQTIFVGRAQK-KVERQAELKEMFEQMKKERIRARQAAK-LYIKNLDDTIDDETLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I VK+M+ G SKGFG +CF +P+ A +A+ +NG + KPL +A+ Q
Sbjct: 311 KEFSVFGSICRVKVMQEA-GQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQ 368
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M G SKG+GFV + + A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTDGEG-SKGYGFVHYQDRRAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L + L+VA +++++R + LR
Sbjct: 158 NGKLLRESTLFVARFKSRKDREAELR 183
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 105/186 (56%), Gaps = 13/186 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+ +
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVXFETQEAAERAIEKMNGMLL 60
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
+++ ++ + +E+ L E N+Y+KN +D+D+ LK+ F
Sbjct: 61 NDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLKEVF 108
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
+ G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ K E
Sbjct: 109 GKYGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYVGRAQKKVE 168
Query: 240 RTSYLR 245
R + L+
Sbjct: 169 RQTELK 174
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 105/204 (51%), Gaps = 35/204 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV V + G SKGYGFV Y T E+A AI+
Sbjct: 152 FIKNLDGAIDNKALHDTFAAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIK---- 207
Query: 117 ATVEGMELYAPSL----------RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKN 165
+V GM L + R + +E A+F N+YVKN++ +VT++
Sbjct: 208 -SVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIETEVTDD---------- 256
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILF 224
E ++ F + G I+S + N G S+GFGFV + N ++A +A++ LN F
Sbjct: 257 --------EFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELNDSDF 308
Query: 225 HQKPLYVAIAQTKRERTSYLRIMY 248
H + LYV AQ K ER LR Y
Sbjct: 309 HGQKLYVGRAQKKHEREEELRKQY 332
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 133/307 (43%), Gaps = 70/307 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + + + + ++F K+G+I S+ + + GKS+G+GFV Y E A A+++L
Sbjct: 245 YVKNIETEVTDDEFRELFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELN 304
Query: 116 AATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEILDK 159
+ G +LY LR A R ++SA + NLYVKNL D+V +E L K
Sbjct: 305 DSDFHGQKLYVGRAQKKHEREEELRKQYEAARQEKSAKYQGVNLYVKNLADEVDDEELRK 364
Query: 160 NLYV------------------------KNINDDVDE------IELKQYFSQCGIISSVK 189
+N DD ++ E K Q + K
Sbjct: 365 IFEAYGAITSAKVMRDVTPLDKAETDAKENKTDDKEKQVDGEPTEDKNGEEQEDMEELEK 424
Query: 190 IMRTNR--------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
M T G SKGFGFVCFSNPDEA +A+ LN + H KPLYVA+AQ K R
Sbjct: 425 KMDTVTIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRK 484
Query: 242 SYLRIMYAKQGPGLASTNFPVHPTLYQRALQVY-QAPGFRHGGMIPNGFSSPPPSPLFLT 300
+ L AS + Q+A AP F M P F P P+ +
Sbjct: 485 TQLE----------ASIQARNQVRMQQQATAGGPMAPQF----MQPQMFMGPNGQPMMMP 530
Query: 301 RAGQAAA 307
G+ AA
Sbjct: 531 GGGRGAA 537
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y++ A+E+
Sbjct: 64 YVGELDPSVTEAMLFELFSSVGQVAS--IRVCRDAVTRRSLGYAYVNYNSANDGERALEE 121
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 122 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGHGNVFIKNLDGAIDNK 163
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ G SKG+GFV + + A++AI ++NG+L ++K ++V
Sbjct: 164 ALHDTFAAFGNILSCKVAVDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGH 223
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 224 HIPKKDRMSKFEEMKA 239
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 108/193 (55%), Gaps = 4/193 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ KL ++FSK+G S KV+ GKSKG+GFV + E+A A++++
Sbjct: 164 YIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDNHEAAKKAVKEMNG 223
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LY+KN++D +D+ +L+
Sbjct: 224 KDINGQLIFVGRAQK-KVERQAELKQMF-EQLKKERIHGCQGVKLYIKNLDDTIDDEKLR 281
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS VK+M+ G SKGFG +CFS+ +EA +A+ +NG + KPL +A+A
Sbjct: 282 KEFSSFGSISRVKVMQEG-GQSKGFGLICFSSLEEATKAMTEMNGHILGSKPLSIALAHR 340
Query: 237 K-RERTSYLRIMY 248
ER YL Y
Sbjct: 341 HYXERKIYLTRQY 353
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 46/259 (17%)
Query: 21 SLYVGDLD---STDLL-------------RLCSALIAS-------------IDVHSAMAT 51
SLYVGDL + DLL R+C L+ D A+ T
Sbjct: 11 SLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI 111
F VN S W + + I + V+S D SKGY FV + Q +A AI
Sbjct: 71 MNFD--VVNGKSIRLMWSQRDAYLRRSGIGN---VMSDDQGSKGYAFVHFQNQSAADRAI 125
Query: 112 EKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
E++ ++ +++ + + +E+ ++N + T N+Y+KN +D+D
Sbjct: 126 EEMNGRQLKDCKVFVGRFKNRKDREAE------LRNKAGEFT------NVYIKNFGEDMD 173
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ +LK+ FS+ G SVK+M + G SKGFGFV F N + A +A+ +NG + + ++V
Sbjct: 174 DEKLKEVFSKYGRTLSVKVMTDSSGKSKGFGFVSFDNHEAAKKAVKEMNGKDINGQLIFV 233
Query: 232 AIAQTKRERTSYLRIMYAK 250
AQ K ER + L+ M+ +
Sbjct: 234 GRAQKKVERQAELKQMFEQ 252
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 102/192 (53%), Gaps = 12/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FG+I SSKV + GKSKG+G+V + ESA AI+ L
Sbjct: 126 FIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNG 185
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G E+Y + + +ES + + + T N+Y+KNIN + + E +
Sbjct: 186 MLLNGQEIYVGPHLSKKERESK------FEEMKANFT------NVYIKNINTETTDKEFE 233
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ ++ G SV + RT G +KGFGFV F N ++A + + LN F +PLYV AQ
Sbjct: 234 ELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQK 293
Query: 237 KRERTSYLRIMY 248
K ER L+ Y
Sbjct: 294 KYERQQELKKQY 305
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++ +KFG S + + +G++KG+GFV + E A+ +E+L
Sbjct: 219 YIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNN 278
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+G LY R Q+ K + E++ NL++KN++D +D+
Sbjct: 279 TEFKGQPLYV-----NRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDK 333
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+M T G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 334 KLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 393
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 394 AQRKDVRRSQL 404
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ L+ IFS G + S +V K S GY +V ++ ++A AIEKL
Sbjct: 38 YVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLN 97
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L K N+++KN++ D+D L
Sbjct: 98 FTPIKG--------KLCRIMWSQRDPSLRKKGAG----------NIFIKNLHPDIDNKAL 139
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKGFG+V F + A+ AI+ LNG+L + + +YV
Sbjct: 140 YDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHL 199
Query: 236 TKRERTSYLRIMYA 249
+K+ER S M A
Sbjct: 200 SKKERESKFEEMKA 213
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 26/126 (20%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDE 211
E + +LYV +++ V E L FS G +SS+++ R I+K G+ +V F++ D
Sbjct: 31 ETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRD--AITKTSLGYAYVNFNDHDA 88
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFP------VHPT 265
A AI LN + I + RIM++++ P L +HP
Sbjct: 89 AKTAIEKLN---------FTPI------KGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPD 133
Query: 266 LYQRAL 271
+ +AL
Sbjct: 134 IDNKAL 139
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 108/186 (58%), Gaps = 13/186 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQ++A AIEK+ +
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLL 60
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
+++ ++ + +E+ L + +E N+Y+KN DD+D+ LK+ F
Sbjct: 61 NDRKVFVGRFKSRKEREA----ELGAR------AKEFT--NVYIKNFGDDMDDERLKEMF 108
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
S+ G SVK+M + G SKGFGFV F ++AN+A+ +NG + K ++V AQ K E
Sbjct: 109 SKYGKTLSVKVMTDSTGKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVE 168
Query: 240 RTSYLR 245
R + L+
Sbjct: 169 RQAELK 174
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 102/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 145 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNG 204
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKNL+ +VT E
Sbjct: 205 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNE--------------- 249
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E ++ F + G I+S + R N G S+GFGFV F N D A A+ LN + + L
Sbjct: 250 ---EFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKL 306
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR +
Sbjct: 307 YVGRAQKKHEREEELRKQH 325
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 63/247 (25%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + N + ++F K+G+I S+ + + GKS+G+GFV + +SA A+E L
Sbjct: 238 YVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLN 297
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
+G +LY GR Q+ K + E+ NLYVKN+ DD+D+
Sbjct: 298 DKEYKGQKLYV-----GRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 352
Query: 173 IELKQYFSQCGIISSVKIMR---------------------------------------- 192
+L+ F G I+S ++MR
Sbjct: 353 EKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEK 412
Query: 193 ------------TNRGISK--GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
T++ + K GFGFVCFSNPDEA++A+ +N + + KPLYVA+AQ K
Sbjct: 413 TDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
Query: 239 ERTSYLR 245
R S L
Sbjct: 473 VRKSQLE 479
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 57 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 115 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 156
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 157 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 216
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 217 HIAKKDRQSKFEEMKA 232
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+ +
Sbjct: 146 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNG 205
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + +E A+F N+YVKN+ +VT++
Sbjct: 206 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNISPEVTDD--------------- 250
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E ++ F + G ++S I R G S+GFGFV F+ + A +A+ LN H + LY
Sbjct: 251 ---EFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAVEELNNKDLHGQELY 307
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 308 VGRAQKKHEREEELRKSY 325
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 80/139 (57%), Gaps = 8/139 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N++ + + + ++F + GD+ SS + QDGKS+G+GFV ++T E+A A+E+L
Sbjct: 239 YVKNISPEVTDDEFRELFERHGDVTSSSIAREQDGKSRGFGFVNFTTHEAAAKAVEELNN 298
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ G ELY GR Q+ K+ + E+ NLY+KN++DDVD+
Sbjct: 299 KDLHGQELYV-----GRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDD 353
Query: 174 ELKQYFSQCGIISSVKIMR 192
+L+ F++ G I+S K+MR
Sbjct: 354 KLRIMFAEFGPITSAKVMR 372
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y++ A+E+
Sbjct: 58 YVGELDPSVTEAMLFELFSQIGAVAS--IRVCRDAVTRRSLGYAYVNYNSTPDGEKALEE 115
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 116 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 157
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A +AI +NG+L ++K +YV
Sbjct: 158 ALHDTFAAFGNILSCKVAQDENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGH 217
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 218 HIPKKDRQSKFEEMKA 233
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 201 FGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
FGFVCFSNPD+A +A+ +N + + KPLYVA+AQ K R S L
Sbjct: 429 FGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLE 473
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 20/101 (19%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V +++ + +A+
Sbjct: 57 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSL--GYAYVNYNSTPDGEKALE 114
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 115 ELNYTLIKGRP---------------CRIMWSQRDPALRKT 140
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 102/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 145 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNG 204
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKNL+ +VT E
Sbjct: 205 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNE--------------- 249
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E ++ F + G I+S + R N G S+GFGFV F N D A A+ LN + + L
Sbjct: 250 ---EFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKL 306
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR +
Sbjct: 307 YVGRAQKKHEREEELRKQH 325
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 111/247 (44%), Gaps = 63/247 (25%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + N + ++F K+G+I S+ + + GKS+G+GFV + +SA A+E L
Sbjct: 238 YVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLN 297
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
+G +LY GR Q+ K + E+ NLYVKN+ DD+D+
Sbjct: 298 DKEYKGQKLYV-----GRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 352
Query: 173 IELKQYFSQCGIISSVKIMR---------------------------------------- 192
+L+ F G I+S ++MR
Sbjct: 353 EKLRDLFIGFGNITSARVMRDTISDAGSESEKEKEASKDNKENVKEETKKEAGGEDSAEK 412
Query: 193 ------------TNRGISK--GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
T++ + K GFGFVCFSNPDEA++A+ +N + + KPLYVA+AQ K
Sbjct: 413 TDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
Query: 239 ERTSYLR 245
R S L
Sbjct: 473 VRKSQLE 479
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 57 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 115 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 156
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 157 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 216
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 217 HIAKKDRQSKFEEMKA 232
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 106/182 (58%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +++ KL ++FS++G I+S KVV GKSKG+GFV+Y T E+A A+ +L+
Sbjct: 202 FVKNLGDDMNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +D+ +LK
Sbjct: 262 KSMDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESIDDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG L K L+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRLVGSKALHVTLGQV 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRGLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN + DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------LGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+++ +LK+ FS+ G I SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 MNDEKLKELFSEYGQIESVKVVRDASGKSKGFGFVKYETHEAAQKAVLELHGKSMDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRGLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 145 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNG 204
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ + R + +E A+F N+Y+KNLD ++
Sbjct: 205 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEI------------------ 246
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D+ E ++ F + G I+S + R G S+GFGFV FS + A A+ +N + LY
Sbjct: 247 DDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLY 306
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 307 VGRAQKKHEREEELRKQY 324
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 8/139 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL S ID+ + ++F KFG+I S+ + Q+GKS+G+GFV +ST ESA A+E++
Sbjct: 238 YIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMND 297
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ +LY GR Q+ K + E+ NLYVKN+ DD+D+
Sbjct: 298 KEIRSQKLYV-----GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 352
Query: 174 ELKQYFSQCGIISSVKIMR 192
+L++ F G I+S K+MR
Sbjct: 353 KLRELFGPYGTITSAKVMR 371
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 57 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 115 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 156
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 157 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 216
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 217 HISKKDRQSKFEEMKA 232
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 196 GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S L
Sbjct: 432 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQL 480
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 145 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 201
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KN++ ++D+
Sbjct: 202 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDD 249
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R G S+GFGFV FS + A A+ +N + LYV
Sbjct: 250 EFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGR 309
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 310 AQKKHEREEELRKQY 324
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 55/243 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL S ID+ + ++F KFG+I S+ + Q+GKS+G+GFV +ST ESA A+E++
Sbjct: 238 YIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMND 297
Query: 117 ATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNL----DDDVTEE- 155
+ +LY LR A R+++++ + NLYVKNL DD+ E
Sbjct: 298 KEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREL 357
Query: 156 ------------ILDKNLYVKNIND------DVDEIELKQYFSQCGII------------ 185
+ D N+ D + D+ K+ +
Sbjct: 358 FGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKPSESSE 417
Query: 186 ----SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
+ K + G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R
Sbjct: 418 EKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 477
Query: 242 SYL 244
S L
Sbjct: 478 SQL 480
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 57 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 115 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 156
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 157 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 216
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 217 HISKKDRQSKFEEMKA 232
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 101/198 (51%), Gaps = 18/198 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G S+GYGFV Y T E+A AI+
Sbjct: 144 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDESGGSRGYGFVHYETAEAANAAIK---- 199
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
+V GM L E F ++ D E + N+YVKNI+ + +
Sbjct: 200 -SVNGMLL----------NEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDTETTDD 248
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R G +GFGFV + ++AN+A++ LN I F + LYV
Sbjct: 249 EFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGR 308
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER LR Y Q
Sbjct: 309 AQKKHEREEELRRQYEAQ 326
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 109/245 (44%), Gaps = 61/245 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI----- 111
+ N+ + + + ++F K+G+I S+ + Q+GK +G+GFV Y E A A+
Sbjct: 237 YVKNIDTETTDDEFRELFEKYGEITSASLARDQEGKVRGFGFVNYIRHEDANKAVDELND 296
Query: 112 -----EKLYAATVEGMELYAPSLR----AGRIQESASFN--NLYVKNLDDDVTEEILDKN 160
+KLY + LR A R ++SA + NLYVKNL DD+ +E L K
Sbjct: 297 IDFKSQKLYVGRAQKKHEREEELRRQYEAQRQEKSAKYMGVNLYVKNLADDIDDEELRKV 356
Query: 161 L-------------------YVKNINDDVDE----------------------IELKQYF 179
V+N ++ E EL +
Sbjct: 357 FEAYGSITSAKVMRDTTPADQVENAEEEKKEDGENEAESSEEKKEDEKKEDGTEELTKKL 416
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
I K++ G SKGFGFVCFSNPDEA +A+ LN + H KPLYVA+AQ K
Sbjct: 417 DTVTIGGEKKVL----GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEV 472
Query: 240 RTSYL 244
R S L
Sbjct: 473 RKSQL 477
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 29/225 (12%)
Query: 28 DSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV 87
+ +D L SA A+ + +SA + L ++ L ++FS G + S + V
Sbjct: 33 EQSDAPTLTSAAPANANPNSASL------YVGELDPSVTEAMLFELFSSIGQVAS--IRV 84
Query: 88 SQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLY 144
+D +S GY +V Y++ A+E+L ++G + RI S
Sbjct: 85 CRDAVTRRSLGYAYVNYNSANDGERALEELNYTLIKG--------KPCRIMWSQR----- 131
Query: 145 VKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFV 204
D + N+++KN++ +D L F+ G I S K+ + G S+G+GFV
Sbjct: 132 -----DPALRKTGHGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDESGGSRGYGFV 186
Query: 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
+ + AN AI ++NG+L ++K ++V K++R S M A
Sbjct: 187 HYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKA 231
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 112/196 (57%), Gaps = 9/196 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA T + L IF +FG+I S+ V+ ++GKS+ +GFV + E+A+ AI+K+
Sbjct: 122 YVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAIDKMNG 181
Query: 117 ATVEGMELYAPSLRAGRIQESAS-FNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
V+ EL+ GR Q + +L V + + ++ + NLYVKN++ VD
Sbjct: 182 TIVDEKELHV-----GRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDYSVDN 236
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS+ G I S K+M ISKG GFV FS +EA++A+ +NG + KP+YV+
Sbjct: 237 TKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVS 296
Query: 233 IAQTKRERTSYLRIMY 248
+AQ K E +L +
Sbjct: 297 LAQCKEEHKLHLHTQF 312
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN +L +FS FG + S KVV G SKGYGFVQ+ ++ S A
Sbjct: 34 FVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASGVSKGYGFVQFYSELSVNIACNVRNG 93
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ ++ +P + + ES F N+YVKNL + T++ +L
Sbjct: 94 TLIRNQHIHVSPFVSRRQWDESRVFTNVYVKNLAETTTDD------------------DL 135
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K F + G I+S +M+ G S+ FGFV F + A AI+ +NG + +K L+V AQ
Sbjct: 136 KMIFEEFGEITSAVVMKDKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQ 195
Query: 236 TKRERTSYLRIMY 248
K+ R L++++
Sbjct: 196 RKKNRIQDLKVIF 208
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN+++ +D +L FS G + S K++R G+SKG+GFV F + N A N
Sbjct: 32 NVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASGVSKGYGFVQFYSELSVNIACNVR 91
Query: 220 NGILFHQKPLYVAIAQTKRE 239
NG L + ++V+ ++R+
Sbjct: 92 NGTLIRNQHIHVSPFVSRRQ 111
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 143 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNG 202
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ + R + +E A+F N+Y+KNLD ++
Sbjct: 203 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEI------------------ 244
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D+ E ++ F + G I+S + R G S+GFGFV FS + A A+ +N + LY
Sbjct: 245 DDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLY 304
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 305 VGRAQKKHEREEELRKQY 322
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 118/244 (48%), Gaps = 56/244 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL S ID+ + ++F KFG+I S+ + Q+GKS+G+GFV +ST ESA A+E++
Sbjct: 236 YIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMND 295
Query: 117 ATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNL----DDDVTEEI 156
+ +LY LR A R+++++ + NLYVKNL DD+ E+
Sbjct: 296 KEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREL 355
Query: 157 L-------------DKNL----------YVKNINDDVDE-------------IELKQYFS 180
D N+ K N + D+ E S
Sbjct: 356 FGPYGTITSAKVMRDTNVERESSPESAGKEKEANKENDKEATPEAEKAEEKAEEKPAESS 415
Query: 181 QCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
+ + K + G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R
Sbjct: 416 EEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 475
Query: 241 TSYL 244
S L
Sbjct: 476 RSQL 479
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 55 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 113 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 154
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 155 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 214
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 215 HISKKDRQSKFEEMKA 230
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ KL +FS++G +S K+V GKSKG+GFV+Y T ++A A+ L+
Sbjct: 202 FVKNLGDDMDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+V+G LY RA + E + + L +Y+KN+++ +DE +LK
Sbjct: 262 KSVDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDEEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG +CFS+ +EA +A+ +NG L KPL+V + Q
Sbjct: 320 EEFSAFGSISRAKVM-MEVGQGKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHVTLGQV 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKNL DD
Sbjct: 168 VQLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNL------------------GDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK FS+ G SVK++R G SKGFGFV + D A +A+ L+G K L
Sbjct: 210 MDDEKLKTLFSEYGQTESVKLVRDASGKSKGFGFVRYETHDAAQKAVLDLHGKSVDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRSLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVQLNNRQVYVGRFKFPEERAAEVR 191
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 96/174 (55%), Gaps = 16/174 (9%)
Query: 78 GDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQES 137
G I S + +GK +G+GFV Y ESA A+++L +E + L GR Q+
Sbjct: 256 GPITSISMEKDSEGKFRGFGFVNYENHESAAKAVDEL-----NDLEFKSQKLYVGRAQKK 310
Query: 138 ASFNNLYVKNLDDDVTEEILDK-------NLYVKNINDDVDEIELKQYFSQCGIISSVKI 190
++ L E L+K NL+VKN++D +D+ LK+ F G I+SVK+
Sbjct: 311 YE----RLQELKKQYEEAKLEKMAKYQGVNLFVKNLDDTIDDELLKKEFESFGTITSVKV 366
Query: 191 MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
MR G SKGFGFVCFS+P+EA RAI N + KPLYVA+AQ K R S L
Sbjct: 367 MRNETGKSKGFGFVCFSSPEEATRAITEKNQQIVAGKPLYVALAQRKDVRRSQL 420
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 104/198 (52%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH FS FG+I S K+ + GKSKG+GFV + +A AI+ +
Sbjct: 142 FIKNLHADIDNKALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDTAASEAIDAING 201
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G+E+Y + + + +ES A+F N+YVKN+D + TEE ++
Sbjct: 202 MMLNGLEVYVAAHVSRKDRESKFEAAKANFTNVYVKNVDLEATEEEFEELF--------- 252
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ G I+S+ + + + G +GFGFV + N + A +A++ LN + F + LY
Sbjct: 253 ---------KKFGPITSISMEKDSEGKFRGFGFVNYENHESAAKAVDELNDLEFKSQKLY 303
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER L+ Y
Sbjct: 304 VGRAQKKYERLQELKKQY 321
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 23/189 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ L ++ L+ IFS G + S + V +D +K GY +V ++ +S AIEK
Sbjct: 54 YVGELDPSVSEALLYDIFSPIGPV--SSIRVCRDAVTKTSLGYAYVNFNDHDSGKVAIEK 111
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ D+D
Sbjct: 112 LNYTPIKG--------KPCRIMWSQR----------DPSMRKNGSGNIFIKNLHADIDNK 153
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G SKGFGFV F A+ AI+ +NG++ + +YVA
Sbjct: 154 ALHDTFSVFGNILSCKIATDETGKSKGFGFVHFEEDTAASEAIDAINGMMLNGLEVYVAA 213
Query: 234 AQTKRERTS 242
++++R S
Sbjct: 214 HVSRKDRES 222
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 40/69 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID+ L + F FG I S KV+ ++ GKSKG+GFV +S+ E A AI +
Sbjct: 338 FVKNLDDTIDDELLKKEFESFGTITSVKVMRNETGKSKGFGFVCFSSPEEATRAITEKNQ 397
Query: 117 ATVEGMELY 125
V G LY
Sbjct: 398 QIVAGKPLY 406
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 103/186 (55%), Gaps = 13/186 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+ +
Sbjct: 2 NLDKSIDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 60
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
+++ ++ + +E+ L E N+Y+KN +D+D+ LK+ F
Sbjct: 61 NDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLKELF 108
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G SVK+M G SKGFGFV F ++A +A+ +NG + K +YV AQ K E
Sbjct: 109 GXFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVE 168
Query: 240 RTSYLR 245
R + L+
Sbjct: 169 RQTELK 174
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 145/332 (43%), Gaps = 58/332 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + +L + G I + ++ + GKSKG+GF + ++A A+E
Sbjct: 189 FIKNLSEDVSEQQLTDLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADAAKGAVENENG 248
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
G +Y GR Q+ L + NLY+KN++D +D +L+
Sbjct: 249 KMFSGKVIYV-----GRAQKKLERE----AELKHKFETKYQGVNLYIKNLDDSIDSDKLR 299
Query: 177 QYFSQCGIISSVKIMRTNRGIS-KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I+S K+MR ++G S KGFGFVC+S PDEA++A+ ++G + KPLYVA AQ
Sbjct: 300 ATFSAYGTITSSKVMRDDKGSSSKGFGFVCYSTPDEASKAVAEMHGRMVGSKPLYVAFAQ 359
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPG---FRHGGMIPN----G 288
K R + L + K S+ PV ++Y ++ P + MIP G
Sbjct: 360 RKDVRRAQLEAQHTK----FKSSRMPVQ-SIYPPTGPIFYPPAGMPVVYPQMIPRPPRAG 414
Query: 289 FSSPPPS-----------PLFLTRAGQAAANNLTN-------GNQRAAANN-SMLAVASP 329
++ P P P+ R G N N G Q AA + +A P
Sbjct: 415 WNGPVPQQGQYPPMQGQYPIRNPRGGVPPTGNHRNQPRPRPDGQQPAAQQPIAQQLIAEP 474
Query: 330 -----------------DERKDILGQGLYPLV 344
+++ LG+ LYPL+
Sbjct: 475 QAVQPEVTLATVQSMPREQQNSFLGELLYPLI 506
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL T+D+ L+ FS FG+I S KVV + SKG+GFV Y +QESA AI K+
Sbjct: 99 FIKNLDKTVDHKALYDTFSAFGNILSCKVVTDETNTSKGFGFVHYESQESAEKAIAKVNG 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + + T+E+ N+++KN+++DV E +L
Sbjct: 159 MMINNQKVFVGPFKSSK---------------ERGATQEVKYTNVFIKNLSEDVSEQQLT 203
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
G I+++ IM +G SKGFGF F + D A A+ NG +F K +YV AQ
Sbjct: 204 DLLQAHGKITNLCIMTDEKGKSKGFGFANFEHADAAKGAVENENGKMFSGKVIYVGRAQK 263
Query: 237 KRERTSYLRIMYAKQGPGL 255
K ER + L+ + + G+
Sbjct: 264 KLEREAELKHKFETKYQGV 282
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 19/193 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L + L ++F++ G + + ++ + S Y ++ Y A A++ L
Sbjct: 11 YVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLSYAYINYHNSTDAERALDTLN 70
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G +A RI S +L + N+++KN++ VD L
Sbjct: 71 NTPIKG--------KACRIMWSQRDPSLRKSGIG----------NIFIKNLDKTVDHKAL 112
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ SKGFGFV + + + A +AI +NG++ + + ++V +
Sbjct: 113 YDTFSAFGNILSCKVVTDETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFK 172
Query: 236 TKRERTSYLRIMY 248
+ +ER + + Y
Sbjct: 173 SSKERGATQEVKY 185
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + F+Q G +++++I R T R +S + ++ + N +A RA+
Sbjct: 9 SLYVGDLHPDVSESHLFEVFNQVGPVANLRICRDNTTRRSLS--YAYINYHNSTDAERAL 66
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+TLN K RIM++++ P L
Sbjct: 67 DTLNNTPIKGK---------------ACRIMWSQRDPSL 90
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 115/245 (46%), Gaps = 61/245 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + + N + ++F K+GDI S+ + S+ GKS+G+GFV + ESA A+E+L
Sbjct: 239 YVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELN 298
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
+G +LY GR Q+ K + E+ NLYVKN+ DD+D+
Sbjct: 299 DKEFKGQKLYV-----GRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 173 IELKQYFSQCGIISSVKIMR----------------TNR--------------------- 195
+L+ F G I+S ++MR +N+
Sbjct: 354 EKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSD 413
Query: 196 ---------------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
G SKGFGFVCFSNPDEA++A+ +N + + KPLYVA+AQ K R
Sbjct: 414 KAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 241 TSYLR 245
S L
Sbjct: 474 KSQLE 478
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 100/199 (50%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 146 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNG 205
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKNLD +VT E
Sbjct: 206 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVTNE--------------- 250
Query: 171 DEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E ++ F + G I+S I + G S+GFGFV F + A A+ LN F + L
Sbjct: 251 ---EFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKL 307
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR +
Sbjct: 308 YVGRAQKKHEREEELRKQH 326
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L S++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 58 YVGELDSSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 116 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 157
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 217
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 218 HIAKKDRQSKFEEMKA 233
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 102/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 145 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNG 204
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKNL+ +VT E
Sbjct: 205 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLEPEVTNE--------------- 249
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E ++ F + G I+S + R N G S+GFGFV F N D A A+ LN + + L
Sbjct: 250 ---EFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKL 306
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR +
Sbjct: 307 YVGRAQKKHEREEELRKQH 325
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 111/246 (45%), Gaps = 63/246 (25%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + N + ++F K+G+I S+ + + GKS+G+GFV + +SA A+E L
Sbjct: 238 YVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLN 297
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
+G +LY GR Q+ K + E+ NLYVKN+ DD+D+
Sbjct: 298 DKEYKGQKLYV-----GRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 352
Query: 173 IELKQYFSQCGIISSVKIMR---------------------------------------- 192
+L+ F G I+S ++MR
Sbjct: 353 EKLRDLFIGFGNITSARVMRDTIGDAGSESEKEKEASKDNKENVREETKKEAGGEDSAEK 412
Query: 193 ------------TNRGISK--GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
T++ + K GFGFVCFSNPDEA++A+ +N + + KPLYVA+AQ K
Sbjct: 413 TDKAEKPDTKKPTDKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
Query: 239 ERTSYL 244
R S L
Sbjct: 473 VRKSQL 478
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126
L ++FS G + S + V +D +S GY +V Y+ A+E L ++G
Sbjct: 70 LFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG----- 122
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIIS 186
+ RI S D + N+++KN++ +D L F+ G I
Sbjct: 123 ---KPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRI 246
S K+ + G SKG+GFV + + A AI +NG+L ++K ++V K++R S
Sbjct: 170 SCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEE 229
Query: 247 MYA 249
M A
Sbjct: 230 MKA 232
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 115/245 (46%), Gaps = 61/245 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + + N + ++F K+GDI S+ + S+ GKS+G+GFV + ESA A+E+L
Sbjct: 239 YVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELN 298
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
+G +LY GR Q+ K + E+ NLYVKN+ DD+D+
Sbjct: 299 DKEFKGQKLYV-----GRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 173 IELKQYFSQCGIISSVKIMR----------------TNR--------------------- 195
+L+ F G I+S ++MR +N+
Sbjct: 354 EKLRDLFIGFGNITSARVMRDTIADAGSESEKEKEISNKENVKEEAKKESAEEESSDKSD 413
Query: 196 ---------------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
G SKGFGFVCFSNPDEA++A+ +N + + KPLYVA+AQ K R
Sbjct: 414 KAEKSDSKKTLEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 241 TSYLR 245
S L
Sbjct: 474 KSQLE 478
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 99/199 (49%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 146 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNG 205
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKNLD VT E
Sbjct: 206 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTKVTNE--------------- 250
Query: 171 DEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E ++ F + G I+S I + G S+GFGFV F + A A+ LN F + L
Sbjct: 251 ---EFRELFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKL 307
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR +
Sbjct: 308 YVGRAQKKHEREEELRKQH 326
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L S++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 58 YVGELDSSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 116 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 157
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 217
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 218 HIAKKDRQSKFEEMKA 233
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 106/182 (58%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNLGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY + +I+ A + + D + +Y+KN+++ +D+ +LK
Sbjct: 262 KSIDGKILYVGRAQK-KIERLAELRRRFERLRLKDKSRPP-GVPIYIKNLDETIDDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG KPL+V + Q
Sbjct: 320 EEFSPFGSISRAKVM-MEVGQGKGFGVVCFSSFEEAAKAVDEMNGRTVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKNL DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNL------------------GDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ FS+ G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 MDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKIL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 103/183 (56%), Gaps = 3/183 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D+ KL IFS++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 193 FVKNFGDDMDDEKLKDIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +D+ +LK
Sbjct: 253 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPVYIKNLDETIDDEKLK 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VC+S+ +EA +A++ +NG + KPL+V + Q
Sbjct: 311 EEFSSFGSISRAKVM-VEVGQGKGFGVVCYSSFEEATKAVDEMNGRIMGSKPLHVTLGQA 369
Query: 237 KRE 239
+R
Sbjct: 370 RRR 372
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 95/184 (51%), Gaps = 21/184 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++Y + R ++ A+F N++VKN DD+D+ +LK
Sbjct: 168 VRLNNRQVYRAA--EVRTRDRATFTNVFVKNF------------------GDDMDDEKLK 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK++R G SKGFGFV + + A +A+ L+G K LYV AQ
Sbjct: 208 DIFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 267
Query: 237 KRER 240
K ER
Sbjct: 268 KIER 271
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIM 247
NG+ + + +Y A R+R ++ +
Sbjct: 166 NGVRLNNRQVYRAAEVRTRDRATFTNVF 193
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNFGDDMDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +D+ +LK
Sbjct: 262 KSMDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNF------------------GDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ FS+ G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 MDDEKLKELFSEYGPTESVKVIRDAGGKSKGFGFVRYETHEAAQKAVLDLHGKSMDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 139 FIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKH--- 195
Query: 117 ATVEGMELYAPSLRAGR-IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V GM L + G I + + + + + T N+YVKNI+ DV + E
Sbjct: 196 --VNGMLLNEKKVFVGHHIPKKERMSKF--EEMKANFT------NIYVKNIDLDVSDEEF 245
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F + G I+S I R +G S+GFGFV + + A+ A++ LN F + LYV AQ
Sbjct: 246 RELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQ 305
Query: 236 TKRERTSYLRIMY 248
K ER LR Y
Sbjct: 306 KKHEREEELRKQY 318
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 108/244 (44%), Gaps = 60/244 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F K GDI S+ + + GKS+G+GFV Y E+A A++ L
Sbjct: 232 YVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALND 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE---ILDKNLYVKNINDDVDEI 173
G +LY GR Q+ K + E+ NLY+KN+NDDVD+
Sbjct: 292 TDFRGQKLYV-----GRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 346
Query: 174 ELKQYFSQCGIISSVKIMR----------------------------------------- 192
+L+ F+ G I+S K+MR
Sbjct: 347 KLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEESKEEAEKTEESKEGADDKKDENK 406
Query: 193 -----TNRGISK------GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
T +G K GFGFVCFSNPDEA +A+ +N + KPLYVA+AQ K R
Sbjct: 407 PGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRK 466
Query: 242 SYLR 245
+ L
Sbjct: 467 NQLE 470
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y++ E A+E+
Sbjct: 51 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 109 LNYTVIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDHAIDNK 150
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L ++K ++V
Sbjct: 151 ALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGH 210
Query: 234 AQTKRERTSYLRIMYA 249
K+ER S M A
Sbjct: 211 HIPKKERMSKFEEMKA 226
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 102/183 (55%), Gaps = 13/183 (7%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+ +
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 60
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
+++ ++ + +E+ L E N+Y+KN +D+D+ LK F
Sbjct: 61 NDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLKDLF 108
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
+ G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ K E
Sbjct: 109 GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 168
Query: 240 RTS 242
R +
Sbjct: 169 RQT 171
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L
Sbjct: 1 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGML 59
Query: 224 FHQKPLYVAIAQTKRERTSYL 244
+ + ++V ++++ER + L
Sbjct: 60 LNDRKVFVGRFKSRKEREAEL 80
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 139 FIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKH--- 195
Query: 117 ATVEGMELYAPSLRAGR-IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V GM L + G I + + + + + T N+YVKNI+ DV + E
Sbjct: 196 --VNGMLLNEKKVFVGHHIPKKERMSKF--EEMKANFT------NIYVKNIDLDVSDEEF 245
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F + G I+S I R +G S+GFGFV + + A+ A++ LN F + LYV AQ
Sbjct: 246 RELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQ 305
Query: 236 TKRERTSYLRIMY 248
K ER LR Y
Sbjct: 306 KKHEREEELRKQY 318
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 108/244 (44%), Gaps = 60/244 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F K GDI S+ + + GKS+G+GFV Y E+A A++ L
Sbjct: 232 YVKNIDLDVSDEEFRELFEKHGDITSASIARDEQGKSRGFGFVNYIKHEAASAAVDALND 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE---ILDKNLYVKNINDDVDEI 173
G +LY GR Q+ K + E+ NLY+KN+NDDVD+
Sbjct: 292 TDFRGQKLYV-----GRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 346
Query: 174 ELKQYFSQCGIISSVKIMR----------------------------------------- 192
+L+ F+ G I+S K+MR
Sbjct: 347 KLRDMFTPFGTITSAKVMRDAMPAERSETPGDEKKEEAKEESEKTEESNEGADDKKDENK 406
Query: 193 -----TNRGISK------GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
T +G K GFGFVCFSNPDEA +A+ +N + KPLYVA+AQ K R
Sbjct: 407 PGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRK 466
Query: 242 SYLR 245
+ L
Sbjct: 467 NQLE 470
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y++ E A+E+
Sbjct: 51 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 109 LNYTVIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDHAIDNK 150
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L ++K ++V
Sbjct: 151 ALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGH 210
Query: 234 AQTKRERTSYLRIMYA 249
K+ER S M A
Sbjct: 211 HIPKKERMSKFEEMKA 226
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 97/193 (50%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV G SKGYGFV Y T E+A +AI K+
Sbjct: 101 FIKNLDKSIDNKALYDTFSAFGNILSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESAS----FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ G +Y A + + S F N+Y+KNL + TEE
Sbjct: 161 KMLNGKIVYVGRFIARKERTPGSDPEKFTNIYIKNLGEAYTEE----------------- 203
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ F G + S +M+ R I + F FV F + + A+RA LNG K +YV
Sbjct: 204 -DLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELNGRKLGDKEVYVG 262
Query: 233 IAQTKRERTSYLR 245
AQ K ER S+LR
Sbjct: 263 RAQKKSERESFLR 275
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 108/190 (56%), Gaps = 8/190 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL L + F FG +QS+ ++ + + FV + E+A A E+L
Sbjct: 192 YIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELNG 251
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E+Y RA + E SF ++ L ++ ++ NLY+KN++D V++ EL
Sbjct: 252 RKLGDKEVYVG--RAQKKSERESF----LRKLREERAQKYQGINLYIKNLDDTVNDEELH 305
Query: 177 QYFSQC--GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ FS G I+S K+M ++G S+GFGFVC++NP++A++A++ +NG + KP+YVA+A
Sbjct: 306 KLFSALPFGQITSCKVMSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYVALA 365
Query: 235 QTKRERTSYL 244
+ K R++ L
Sbjct: 366 ERKDVRSAKL 375
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 23/188 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ +L T+ L +IF G + S + V +D +S GY +V + A A++
Sbjct: 13 YVGDLNPTVTEALLFEIFKAVGPVAS--IRVCRDAVTRRSLGYAYVNFHNVVDAERALDT 70
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 71 LNYTLIKG--------RPCRIMWSHR----------DPSIRKSGQGNIFIKNLDKSIDNK 112
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K++ +G SKG+GFV + + A+ AI +NG + + K +YV
Sbjct: 113 ALYDTFSAFGNILSCKVVTDGKGNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVGR 172
Query: 234 AQTKRERT 241
++ERT
Sbjct: 173 FIARKERT 180
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGEDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+V+G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSVDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I +D
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGED 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSVDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 112/196 (57%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +I + L ++F+ FG I S KVV ++G+SKG+GFVQ+ T++SA+ A L+
Sbjct: 113 YVKNLDISITSSGLERMFNPFGVILSCKVV-EENGQSKGFGFVQFETEQSAVTARSALHG 171
Query: 117 ATVEGMELYAPSL--RAGRIQESAS--FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ V+G +L+ + R+ + + F N+YVKNL +++TE+IL +
Sbjct: 172 SMVDGKKLFVAKFINKNERVAMAGNKGFTNVYVKNLIENITEDILHR------------- 218
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
FSQ G +SSV +MR G S+GFGFV F +P+ A +A+++L+G K L+V
Sbjct: 219 -----LFSQYGTVSSVVVMRDGMGRSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTLFVG 273
Query: 233 IAQTKRERTSYLRIMY 248
A + ER L+ Y
Sbjct: 274 KALKRDERREMLKHKY 289
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 112/199 (56%), Gaps = 11/199 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG--KSKGYGFVQYSTQESALNAIEKL 114
+ NL I LH++FS++G + S VVV +DG +S+G+GFV + E+A A++ L
Sbjct: 203 YVKNLIENITEDILHRLFSQYGTVSS--VVVMRDGMGRSRGFGFVNFCHPENAKKAVDSL 260
Query: 115 YAATVEGMELYAPSLRAGR-IQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDE 172
+ G ++ + +L G+ ++ L K D+ + + + NLYVKN+++ +++
Sbjct: 261 H-----GRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAKSNMRWSNLYVKNLSESMND 315
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F + G I S K+MR G SKGFGFVCFSN +E+ +A LNG K L V
Sbjct: 316 TTLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVR 375
Query: 233 IAQTKRERTSYLRIMYAKQ 251
+A+ K +R L+ + Q
Sbjct: 376 VAERKEDRLKRLQQYFHAQ 394
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 88 SQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKN 147
S GKS Y ++ + + SA NA+ +L ++G +A RI S
Sbjct: 56 SVTGKSLCYAYINFDSPFSASNAMARLNHTDLKG--------KAMRIMWSQR-------- 99
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
D NLYVKN++ + L++ F+ G+I S K++ N G SKGFGFV F
Sbjct: 100 -DLSYRRRTGFGNLYVKNLDISITSSGLERMFNPFGVILSCKVVEEN-GQSKGFGFVQFE 157
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
A A + L+G + K L+VA K ER +
Sbjct: 158 TEQSAVTARSALHGSMVDGKKLFVAKFINKNERVA 192
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 97/195 (49%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 153 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGNSKGYGFVHYETDEAASQAIKH--- 209
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN---LYVKNINDDVDEI 173
V GM L E F ++ D E + N +YVKNI D +
Sbjct: 210 --VNGMLL----------NEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPADATDD 257
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ ++ F + G ++S + R G ++GFGFV F N + A+ A++ LNG F + LYV
Sbjct: 258 QFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHASAAVDELNGKDFMGQDLYVGR 317
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 318 AQKKHEREEELRKSY 332
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F KFGD+ S+ + + GK++G+GFV + E A A+++L
Sbjct: 246 YVKNIPADATDDQFRELFEKFGDVTSASLARDEAGKNRGFGFVNFINHEHASAAVDELNG 305
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLYVKN+ DDVD+
Sbjct: 306 KDFMGQDLYV-----GRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLEDDVDDE 360
Query: 174 ELKQYFSQCGIISSVKIMR 192
+L++ F+ G I+S K+MR
Sbjct: 361 KLRELFAPYGAITSAKVMR 379
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 33/235 (14%)
Query: 28 DSTDLLRLCSALIASIDVHSAMATPTFIP----------FTVNLASTIDNWKLHQIFSKF 77
D+T + S S D +A TPT + L ++ L ++FS+
Sbjct: 26 DATAINTNVSTEATSEDPDTAGPTPTGAQAAHPQASASLYVGELDPSVTEAMLFELFSQI 85
Query: 78 GDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRI 134
G + S + V +D +S GY +V Y+T A+E+L ++G R RI
Sbjct: 86 GSVAS--IRVCRDAVTRRSLGYAYVNYNTTIDGEKALEELNYTLIKG--------RPCRI 135
Query: 135 QESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN 194
S D + N+++KN++ +D L F+ G I S K+ +
Sbjct: 136 MWSQR----------DPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE 185
Query: 195 RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
G SKG+GFV + + A++AI +NG+L ++K ++V K++R S M A
Sbjct: 186 SGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKA 240
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 56/112 (50%), Gaps = 19/112 (16%)
Query: 196 GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL----------R 245
G SKGFGFVCF+NPDEA +A+ +N + + KPLYVA+AQ K R S L R
Sbjct: 447 GKSKGFGFVCFNNPDEATKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQARNQIR 506
Query: 246 IMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSPL 297
+ A GL P + +A Y PG + G M PN P PL
Sbjct: 507 MQQAAAAAGL--------PQQFIQAPMFY-GPGQQPGFMPPNAGGRGMPFPL 549
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V ++ + +A+
Sbjct: 63 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSL--GYAYVNYNTTIDGEKAL 120
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 121 EELNYTLIKGRP---------------CRIMWSQRDPALRKT 147
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 102/198 (51%), Gaps = 18/198 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV V + G SKGYGFV Y T ++A AI+
Sbjct: 146 FIKNLDAAIDNKALHDTFAAFGNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIK---- 201
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
+V GM L E F ++ D E + N+YVKNI+ + +
Sbjct: 202 -SVNGMLL----------NEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDAETTDD 250
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + ++G +GFGFV F ++A +A++ LN + F + LYV
Sbjct: 251 EFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDELNDLDFKGQKLYVGR 310
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER LR Y Q
Sbjct: 311 AQKKHEREEELRKQYEAQ 328
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 105/244 (43%), Gaps = 60/244 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F K+G I S+ + GK +G+GFV + E A A+++L
Sbjct: 239 YVKNIDAETTDDEFRELFEKYGQITSASLAHDDQGKVRGFGFVNFIRHEDAAKAVDELND 298
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+G +LY GR Q+ K + E+ NLYVKN+ D++D+
Sbjct: 299 LDFKGQKLYV-----GRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDE 353
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISK---------------------------------- 199
EL++ F G I+S K+MR + K
Sbjct: 354 ELRKIFEPYGAITSAKVMRDTTPLDKVEGAEKEDGEKKESESSAEDKEEEKKDDADELAK 413
Query: 200 ------------------GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
GFGFVCFSNPDEA +A+ LN + H KPLYVA+AQ K R
Sbjct: 414 KLDTVTIGGEKKVLGKSKGFGFVCFSNPDEATKAVTELNQKMIHSKPLYVALAQRKEVRK 473
Query: 242 SYLR 245
S L
Sbjct: 474 SQLE 477
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y++ A+E+
Sbjct: 58 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNSAADGERALEE 115
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 116 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDAAIDNK 157
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ G SKG+GFV + D AN+AI ++NG+L ++K ++V
Sbjct: 158 ALHDTFAAFGNILSCKVAVDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGH 217
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 218 HIPKKDRMSKFEEMKA 233
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 100/193 (51%), Gaps = 14/193 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 142 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 198
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
V GM L + G +++ K+ E + N+Y+KNI+ DV E E
Sbjct: 199 --VNGMLLNDKKVFVG--------HHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEF 248
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F Q G I+S + R G S+GFGFV +S + A A++ ++ + LYV AQ
Sbjct: 249 RKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQ 308
Query: 236 TKRERTSYLRIMY 248
K ER LR Y
Sbjct: 309 KKHEREEELRKQY 321
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 111/245 (45%), Gaps = 61/245 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + +IF +FG+I S+ + +GKS+G+GFV YST ESA A+++++
Sbjct: 235 YIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHD 294
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
V+ +LY GR Q+ K + E+ NLYVKN+ DDVD+
Sbjct: 295 KEVKTQKLYV-----GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 349
Query: 174 ELKQYFSQCGIIS-------SVKIMRTNR------------------------------- 195
+L++ F G I+ S RT
Sbjct: 350 KLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESD 409
Query: 196 ---------------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R
Sbjct: 410 EEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 469
Query: 241 TSYLR 245
S L
Sbjct: 470 RSQLE 474
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 54 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 112 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 153
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 154 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 213
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 214 HISKKDRQSKFDEMKA 229
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 38/120 (31%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV LD VTE +L EL FS G ++S+++ R T R +
Sbjct: 52 SLYVGELDPSVTEAML---------------YEL---FSSIGQVASIRVCRDAVTRRSL- 92
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
G+ +V ++N + RA+ LN L KP RIM++++ P L T
Sbjct: 93 -GYAYVNYNNTADGERALEDLNYTLIKGKP---------------CRIMWSQRDPALRKT 136
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 130/260 (50%), Gaps = 33/260 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL+ + L +IF +G+I S+ ++V DGKS+ +GF+ + + + A A+E+L
Sbjct: 221 FVKNLSESTTKEDLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNG 280
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ E Y GR Q+ S + +K + ++ DK NLY+KN++D + +
Sbjct: 281 KKINDKEWYV-----GRAQKK-SEREIELKRRFEQSMKDAADKYQGLNLYMKNLDDSIGD 334
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + FS G I+S KIMR G+SKG GFV FS + +NG + KPLYVA
Sbjct: 335 DQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTLPFIQ--LTEMNGKMISGKPLYVA 392
Query: 233 IAQTKRERTSYLRIMYAK-----QGPGLASTNFPVHPTLYQRALQVY--QAP-------- 277
AQ K +R + L+ +++ P +A P++P + Q++ QAP
Sbjct: 393 FAQRKEDRKAMLQAQFSQVRPVPMTPSMA-PRLPMYPPMAPLGQQLFYGQAPPAIMPPQP 451
Query: 278 --GFRHG---GMIPNGFSSP 292
GF+ GM P G P
Sbjct: 452 GFGFQQQLVPGMRPGGAHMP 471
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 98/193 (50%), Gaps = 22/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ LH FS FG+I S KV + G+SKG+GFVQY E+A +AI+ L
Sbjct: 130 FIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNG 189
Query: 117 ATVEGMELY-APSLRAGRIQES---ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ +Y P LR + S FNN++VKNL + T+E
Sbjct: 190 MLINDKPVYVGPFLRKQERENSVDKTKFNNVFVKNLSESTTKE----------------- 232
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L + F G I+S IM G S+ FGF+ F +PD+A RA+ LNG + K YV
Sbjct: 233 -DLVKIFGAYGNITSAVIMVGMDGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVG 291
Query: 233 IAQTKRERTSYLR 245
AQ K ER L+
Sbjct: 292 RAQKKSEREIELK 304
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L +++ + +L+++FS+ G + S +V +S GY +V ++ A A+E L
Sbjct: 42 YVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALELLN 101
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
A + G + R+ S D + N+++KN++ +D L
Sbjct: 102 FAPLNGKPI--------RVMYSNR----------DPSSRRSGSANIFIKNLDKAIDHKTL 143
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKGFGFV + + A AI +LNG+L + KP+YV
Sbjct: 144 HDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFL 203
Query: 236 TKRER 240
K+ER
Sbjct: 204 RKQER 208
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAIN 217
++LYV ++ V + +L + FSQ G + SV++ R + S G+ +V F+NP +A RA+
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 218 TLNGILFHQKPLYV 231
LN + KP+ V
Sbjct: 99 LLNFAPLNGKPIRV 112
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D+ KL +IFS +G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ G LY RA + E + + L +Y+KN+++ +D+ +LK
Sbjct: 262 KSINGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-VEVGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKCIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNF------------------GDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ FS G SVK++R G SKGFGFV + + A +A+ L+G + K L
Sbjct: 210 MDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 101/206 (49%), Gaps = 34/206 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A +AI+
Sbjct: 147 FIKNLDGAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIK---- 202
Query: 117 ATVEGMELYAPSL----------RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKN 165
+V GM L + R + +E A+F N+YVKN+D + T++
Sbjct: 203 -SVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNIYVKNIDPEATDD---------- 251
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
E + F + G I+S + G S+GFGFV + ++AN+A+ LN F
Sbjct: 252 --------EFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDANKAVEELNNSDFK 303
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAKQ 251
+ LYV AQ K ER LR Y Q
Sbjct: 304 GQALYVGRAQKKHEREEELRKQYEAQ 329
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 122/285 (42%), Gaps = 80/285 (28%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + +F K+GDI S+ + Q+GKS+G+GFV Y E A A+E+L
Sbjct: 240 YVKNIDPEATDDEFRALFEKYGDITSASLAHDQEGKSRGFGFVNYIRHEDANKAVEELNN 299
Query: 117 ATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEIL--- 157
+ +G LY LR A R ++SA + NLYVKNL D++ ++ L
Sbjct: 300 SDFKGQALYVGRAQKKHEREEELRKQYEAQRQEKSAKYQGVNLYVKNLADEIDDDELRKI 359
Query: 158 -----------------------------------------------DKNLYVKNINDDV 170
DKN + DV
Sbjct: 360 FEPYGAITSAKVMRDTIPADEVAASKKDEEKSDEEKQSDDEEKKDEGDKNEEGEKKEGDV 419
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+++ K I KI+ G SKGFGFVCFSNPDEA +A+ LN + H KPLY
Sbjct: 420 EDVIKK--LDTITIGGEKKIL----GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLY 473
Query: 231 VAIAQTKRERTSYL--------RIMYAKQGPGLASTNFPVHPTLY 267
VA+AQ K R S L ++ +QGP A + P ++
Sbjct: 474 VALAQRKEVRKSQLEASIQARNQVRMQQQGPAGAIPPQFMQPQMF 518
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y++ A+E+
Sbjct: 59 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNSANDGERALEE 116
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 117 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDGAIDNK 158
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI ++NG+L ++K ++V
Sbjct: 159 ALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGH 218
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 219 HIPKKDRMSKFEEMKA 234
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D+ KL +IFS +G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ G LY RA + E + + L +Y+KN+++ +D+ +LK
Sbjct: 262 KSINGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-VEVGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKCIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNF------------------GDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ FS G SVK++R G SKGFGFV + + A +A+ L+G + K L
Sbjct: 210 MDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKCIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 97/196 (49%), Gaps = 19/196 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 152 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGASKGYGFVHYETDEAAAQAIKH--- 208
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
V GM L E F ++ D E + N+YVKNI + E
Sbjct: 209 --VNGMLL----------NEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATEE 256
Query: 174 ELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
E ++ F + G ++S + R T G S+GFGFV F N + A A++ LNG F + LYV
Sbjct: 257 EFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVG 316
Query: 233 IAQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 317 RAQKKHEREEELRRSY 332
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 128/286 (44%), Gaps = 68/286 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + ++F KFGD+ S+ + ++ GKS+G+GFV + E A A+++L
Sbjct: 245 YVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATAVDELN 304
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
+G +LY GR Q+ ++ + E+ NLYVKN++D++D+
Sbjct: 305 GKDFKGQDLYV-----GRAQKKHEREEELRRSYEAARMEKASKYQGVNLYVKNLDDEIDD 359
Query: 173 IELKQYFSQCGIISSVKIMRTNR------------------------------------- 195
+L++ F+ G I+S K+MR
Sbjct: 360 EKLRELFAPFGAITSAKVMRDTPAETADAEDKKEKDEEKNKENKKEGEAETEEASAPKAK 419
Query: 196 ---GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL-------- 244
G SKGFGFVCF+NPDEA +A++ +N + KPLYVA+AQ K R S L
Sbjct: 420 RPLGKSKGFGFVCFNNPDEATKAVSDMNQRMVSNKPLYVALAQRKDVRKSQLEASIQARN 479
Query: 245 --RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNG 288
R+ A G+ P Y +A + PG + G +P G
Sbjct: 480 QIRMQQAAAQAGM--------PQQYMQAPMFF-PPGAQQPGFLPQG 516
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 31/236 (13%)
Query: 25 GDLDSTDLLRLCSALIASIDVHSAMATPTFIP--------FTVNLASTIDNWKLHQIFSK 76
GD + L + + S D +A TPT P + L ++ L ++FS+
Sbjct: 24 GDANGATTLNTDVSNVNSEDQDAAGPTPTNAPHPQASASLYVGELDPSVTEAMLFELFSQ 83
Query: 77 FGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133
G + S + V +D +S GY +V Y+T A+E+L ++G R R
Sbjct: 84 IGSVAS--IRVCRDAITRRSLGYAYVNYNTTVDGEKALEELNYTLIKG--------RPCR 133
Query: 134 IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT 193
I S D + N+++KN++ +D L F+ G I S K+ +
Sbjct: 134 IMWSQR----------DPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD 183
Query: 194 NRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
G SKG+GFV + + A +AI +NG+L ++K ++V K++R S M A
Sbjct: 184 ESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKA 239
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FGDI S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGDILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGDILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 105/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA++A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEASKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 103/186 (55%), Gaps = 13/186 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +JDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+ +
Sbjct: 2 NLDKSJDNKALYDXFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 60
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
+++ ++ + +E+ L E N+Y+KN +D+D+ LK+ F
Sbjct: 61 NDRKVFVGRFKSRKEREAX---------LGARAKEFT---NVYIKNFGEDMDDERLKELF 108
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G SVK+M G SKGFGFV F ++A +A+ +NG + K +YV AQ K E
Sbjct: 109 GXFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYVXRAQKKVE 168
Query: 240 RTSYLR 245
R + L+
Sbjct: 169 RQTELK 174
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNFGDDMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ + + +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDESISDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGHGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV S D SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVV-SDDHGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNF------------------GDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ FS+ G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 MDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVSDDHG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 103/186 (55%), Gaps = 13/186 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+ +
Sbjct: 2 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLL 60
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
+++ ++ + +E+ L E N+Y+KN +D+D+ LK+ F
Sbjct: 61 NDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLKELF 108
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ K E
Sbjct: 109 GXXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 168
Query: 240 RTSYLR 245
R + L+
Sbjct: 169 RQTELK 174
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 103/182 (56%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +D+ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG +CFS+ +EA +A++ +NG + KPL V + Q
Sbjct: 320 EEFSSFGSISRAKVM-VEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 114/242 (47%), Gaps = 44/242 (18%)
Query: 7 ALNN-NDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTI 65
ALN N I G PF L D RL + I +I F NL +I
Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDD----RLRKSGIGNI-------------FIKNLDKSI 117
Query: 66 DNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
DN L +FS FG I S KVV +G SKGY +V + + +A AI + + ++Y
Sbjct: 118 DNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVY 176
Query: 126 A-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
P RA R ++ A+F N++VKN DD+D+ +LK+
Sbjct: 177 VGRFKFPEERAAEVRTRDKATFTNVFVKNF------------------GDDMDDDKLKEL 218
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
FS+ G SVK++R + G SKGFGFV + + A +A+ L+G K LYV AQ K
Sbjct: 219 FSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKI 278
Query: 239 ER 240
ER
Sbjct: 279 ER 280
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 153/330 (46%), Gaps = 79/330 (23%)
Query: 90 DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLD 149
+G S+ +GFV + E A NA++ L ++ M LY RA + E + ++
Sbjct: 5 NGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYV--ARAQKKSERQAELKAKFEHDK 62
Query: 150 DDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNP 209
+ E++ NLY+KN++DD+++ L++ F G ++S K+M + G SKG GFV F+
Sbjct: 63 NQKFEKLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATV 122
Query: 210 DEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAK----------QGPGLASTN 259
++AN AI +NG + +KPLYVA+AQ K ER ++L +A+ GP +A
Sbjct: 123 EDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHFARVRALATMAPTLGPNIAPHQ 182
Query: 260 F------------------PVHPTLYQRALQVY---QAPGFR----HGGM---------- 284
F P + Y + PG R HGGM
Sbjct: 183 FNFGHGVPALFPPPPPAGFGFQPNFVPNMMMPYNMQRQPGQRSGPPHGGMPRHLHNPHQM 242
Query: 285 -----------IP---NGFSSP-----------PPSPLFLTRAGQAAANNLTNGNQRAAA 319
+P NG ++P P P+ QA + + G +A +
Sbjct: 243 FHQNANQGFRHMPNRRNGVANPAMLHQHHRFSSPMQPM-----QQAVKHVVPVGELQAPS 297
Query: 320 NN--SMLAVASPDERKDILGQGLYPLVKKL 347
NN + LA A+P+++++ILG L+PLV++L
Sbjct: 298 NNLQTSLASANPEQQREILGDMLFPLVEQL 327
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL I++ L ++F FG++ S KV++ G+SKG GFV ++T E A NAI K+
Sbjct: 75 YLKNLDDDINDEHLRKLFECFGEVASCKVMLDSHGRSKGCGFVSFATVEDANNAILKMNG 134
Query: 117 ATVEGMELYAPSLRAGRIQESASF 140
V LY A R +E +F
Sbjct: 135 KMVGKKPLYVAV--AQRKEERKAF 156
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%)
Query: 191 MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
MR G+S+ FGFV F + A A+ LNG LYVA AQ K ER + L+ +
Sbjct: 1 MRDANGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKF 58
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 100/196 (51%), Gaps = 20/196 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 139 FIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKH--- 195
Query: 117 ATVEGMELYAPSLRAG----RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
V GM L + G + + + F + N+YVKNI+ DV +
Sbjct: 196 --VNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFT-----------NIYVKNIDLDVTD 242
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+ ++ F + G I+S I R ++G S+GFGFV + + A A++ LN I F + LYV
Sbjct: 243 EDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVG 302
Query: 233 IAQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 303 RAQKKHEREEELRKQY 318
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 104/242 (42%), Gaps = 55/242 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + ++F K GDI S+ + GKS+G+GFV Y E+A A++ L
Sbjct: 232 YVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDHLND 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+G +LY + +E L+ + + NLY+KN+NDDVD+ +L+
Sbjct: 292 IEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGV--NLYIKNLNDDVDDEKLR 349
Query: 177 QYFSQCGIISSVK-IMR------------------------------------------- 192
F+ G I+S K I+R
Sbjct: 350 DMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAG 409
Query: 193 ---TNRGISKGFG------FVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSY 243
T +G K G FVCFSNPDEA +A+ +N + KPLYVA+AQ K R +
Sbjct: 410 DKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQ 469
Query: 244 LR 245
L
Sbjct: 470 LE 471
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y++ E A+E+
Sbjct: 51 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 109 LNYTVIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDHAIDNK 150
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L ++K ++V
Sbjct: 151 ALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGH 210
Query: 234 AQTKRERTSYLRIMYA 249
K+ER S M A
Sbjct: 211 HIPKKERMSKFEEMKA 226
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 110/199 (55%), Gaps = 11/199 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG--KSKGYGFVQYSTQESALNAIEKL 114
+ NL T+ + LH +FS++G + S VVV +DG +S+G+GFV + E+A A+E L
Sbjct: 205 YVKNLIETVTDDCLHTLFSQYGTVSS--VVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 115 YAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE--ILDKNLYVKNINDDVDE 172
G++L + L G+ + + + D+ + + NLYVKN+++ ++E
Sbjct: 263 C-----GLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNE 317
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F G I S K+M G SKGFGFVCFSN +E+ +A LNG L KP+ V
Sbjct: 318 TRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVR 377
Query: 233 IAQTKRERTSYLRIMYAKQ 251
+A+ K +R L+ + Q
Sbjct: 378 VAERKEDRIKRLQQYFQAQ 396
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 112/210 (53%), Gaps = 23/210 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL S+I + L ++F FG I S KVV ++G+SKG+GFVQ+ T++SA++A L+
Sbjct: 115 YVKNLDSSITSSCLERMFCPFGSILSCKVV-EENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ V G +L+ + + +A N D T N+YVKN+ + V + L
Sbjct: 174 SMVYGKKLFVAKF-INKDERAAMAGN-------QDST------NVYVKNLIETVTDDCLH 219
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G +SSV +MR G S+GFGFV F NP+ A +A+ +L G+ K L+V A
Sbjct: 220 TLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALK 279
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
K ER L+ + S NF P +
Sbjct: 280 KDERREMLKQKF--------SDNFIAKPNM 301
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 91 GKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL---YAPSLRAGRIQESASFNNLYVKN 147
GKS Y ++ + + SA NA+ +L + ++G + ++ A R + F NLYVKN
Sbjct: 59 GKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKN 118
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
LD +T L++ F G I S K++ N G SKGFGFV F
Sbjct: 119 LDSSITSSCLER------------------MFCPFGSILSCKVVEEN-GQSKGFGFVQFD 159
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
A A + L+G + + K L+VA K ER +
Sbjct: 160 TEQSAVSARSALHGSMVYGKKLFVAKFINKDERAA 194
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 187 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 246
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 247 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 304
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 305 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 363
Query: 237 KR 238
+R
Sbjct: 364 RR 365
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 94 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 152
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 153 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 194
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 195 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 254
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 255 YVGRAQKKIER 265
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 92 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 151 NGVRLNNRQVYVGRFKFPEERAAEVR 176
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRA 215
L LYV +++ DV E L + F G + +I R S G+G+V F P +A A
Sbjct: 1 LKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWA 60
Query: 216 INTLNGILFHQKPLYVAIAQ 235
+NT+N L + KP + +Q
Sbjct: 61 LNTMNFDLINGKPFRLMWSQ 80
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 104/183 (56%), Gaps = 3/183 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 170 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 229
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 230 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 287
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 288 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 346
Query: 237 KRE 239
+R
Sbjct: 347 RRR 349
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 77 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 135
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 136 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 177
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 178 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 237
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 238 YVGRAQKKIER 248
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 75 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 133
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 134 NGVRLNNRQVYVGRFKFPEERAAEVR 159
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-LEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 103/181 (56%), Gaps = 3/181 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A ++ L+
Sbjct: 202 FVKNLGDNMDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T++G LY + +I+ A + + L +Y+KN+++ +D+ +LK
Sbjct: 262 KTIDGKVLYVGRAQK-KIERLAELRRRF-ERLKLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGF VCFS+ +EA +A++ +NG + KPL V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEMGQGKGFAVVCFSSFEEATKAVDEMNGPVLGSKPLSVTLGQA 378
Query: 237 K 237
+
Sbjct: 379 R 379
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 104/201 (51%), Gaps = 26/201 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F +L +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKHLDKSIDNRTLFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKNL D+
Sbjct: 168 VWLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNL------------------GDN 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ FS+ G SVK++R G SKGFGFV + + A +++ L+G K L
Sbjct: 210 MDDEKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKSVLDLHGKTIDGKVL 269
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
YV AQ K ER + LR + +
Sbjct: 270 YVGRAQKKIERLAELRRRFER 290
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 34 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 92
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L K +E N+Y+KN +D+D+ LK
Sbjct: 93 MLLNDRKVFVGRFKSRKEREA----ELGAK------AKEFT--NVYIKNFGEDMDDERLK 140
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G SVK+M + G SKGFGFV F ++A +A++ +NG + + +YV
Sbjct: 141 EIFNKFGAFLSVKVMTDDSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYVGPCPX 200
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 201 KVERQTELK 209
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 32 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 90
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 91 NGMLLNDRKVFVGRFKSRKEREAEL 115
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 130/304 (42%), Gaps = 74/304 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ S + + ++F K+GDI S+ + ++ GK++G+GFV Y E A A+E+L
Sbjct: 237 YVKNIDSETTDNEFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEELN 296
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLD---DDVTEEILDKNLYVKNINDDVDE 172
+ +G +LY GR Q+ K + + + + NLYVKN+ D++D+
Sbjct: 297 DSDFKGQKLYV-----GRAQKKHEREEELRKQYEAARQEKSAKYTGVNLYVKNLADEIDD 351
Query: 173 IELKQYFSQCGIISSVKIMR---------------------------------------- 192
EL++ F G I+S K+MR
Sbjct: 352 DELRKVFEPYGAITSAKVMRDTLPADGSETPAKKEGDAEEKEAEPEKDGEKKDDVDDLSK 411
Query: 193 -----TNRGISK------GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
T +G K GFGFVCFSNPDEA +A+ LN + H KPLYVA+AQ K R
Sbjct: 412 KLDTVTIQGEKKLLGKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQRKEVRK 471
Query: 242 SYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSPLFLTR 301
S L AS + Q+A P F M P F P P+ +
Sbjct: 472 SQLE----------ASIQARNQVRMQQQATAGGIPPQF----MQPQMFMGPNGQPMMMPA 517
Query: 302 AGQA 305
G+
Sbjct: 518 GGRG 521
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 100/199 (50%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV ++ SKGYGFV Y T E+A AI+ +
Sbjct: 144 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDENANSKGYGFVHYETAEAANQAIKNVNG 203
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ R +++E A+F N+YVKN+D + T+
Sbjct: 204 MLLNEKKVFVGHHIPKKDRMSKVEEMKANFTNIYVKNIDSETTDN--------------- 248
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E ++ F + G I+S + N G ++GFGFV + ++A +A+ LN F + L
Sbjct: 249 ---EFRELFEKYGDITSASLAHDNESGKNRGFGFVNYIRHEDAYKAVEELNDSDFKGQKL 305
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 306 YVGRAQKKHEREEELRKQY 324
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E+
Sbjct: 56 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNVAGDGERALEE 113
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + + N+++KN++ +D
Sbjct: 114 LNYTLIKG--------RPCRIMWSQR----------DPLLRKTGQGNVFIKNLDAAIDNK 155
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + SKG+GFV + + AN+AI +NG+L ++K ++V
Sbjct: 156 ALHDTFAAFGNILSCKVAQDENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGH 215
Query: 234 AQTKRERTSYLRIMYA 249
K++R S + M A
Sbjct: 216 HIPKKDRMSKVEEMKA 231
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 103/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+ +
Sbjct: 152 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNG 211
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + E A+F N+YVKN++ +VT++
Sbjct: 212 MLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDD--------------- 256
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G ++S + R G S+GFGFV F++ ++A++A+ LN FH + L
Sbjct: 257 ---EFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNL 313
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 314 YVGRAQKKHEREEELRKSY 332
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 136/305 (44%), Gaps = 63/305 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + + + +F K+GD+ SS + Q+ GKS+G+GFV +++ E A A+++L
Sbjct: 245 YVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
G LY GR Q+ K+ + E+ NLY+KN++D+VD+
Sbjct: 305 EKEFHGQNLYV-----GRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359
Query: 173 IELKQYFSQCGIISSVKIMR----------------------TNRGISK----------- 199
+L+Q FS+ G I+S K+MR N+ K
Sbjct: 360 EKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKE 419
Query: 200 --------------GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
GFGFVCF+NPD+A +A+ +N + + KPLYVA+AQ K R + L
Sbjct: 420 GEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE 479
Query: 246 --IMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPP-PS---PLFL 299
I Q + P Y +A V+ PG + G M P G P P P+
Sbjct: 480 QSIQARNQLRMQQAAAAAGMPQQYMQA-PVFYGPGSQPGFMPPAGGRGMPYPQGGMPMQP 538
Query: 300 TRAGQ 304
R GQ
Sbjct: 539 GRPGQ 543
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+T A+E+
Sbjct: 64 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 122 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 163
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 164 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 223
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 224 HIPKKDRQSKFDEMKA 239
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V ++ + +A+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSL--GYAYVNYNTTADGEKAL 119
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 120 EELNYTLIKGRP---------------CRIMWSQRDPALRKT 146
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 14/189 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AI+K+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M + G SKGFGFV F ++A +A++ +NG + K +YV A+
Sbjct: 209 EMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAK- 267
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 268 KVERQTELK 276
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F K+G S KV+ GKSKG+GFV + E A A++ +
Sbjct: 194 YIKNFGEDMDDERLKEMFGKYGPALSVKVMTDDSGKSKGFGFVSFERHEDAQKAVDDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +Y RA +++ + + D +T NLYVKN++D +D+ L+
Sbjct: 254 KDMNGKAIYV--GRAKKVERQTELKRKFEQMKQDRITR-YQGVNLYVKNLDDGIDDERLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
+ FS G I+S K+M G SKGFGFVCFS
Sbjct: 311 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFS 340
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI+ +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 99/196 (50%), Gaps = 20/196 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 139 FIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKH--- 195
Query: 117 ATVEGMELYAPSLRAG----RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
V GM L + G + + + F + N+YVKNI+ DV +
Sbjct: 196 --VNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFT-----------NIYVKNIDLDVSD 242
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+ + F + G I+S I R ++G S+GFGFV + + A+ A++ LN F + LYV
Sbjct: 243 DDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVG 302
Query: 233 IAQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 303 RAQKKHEREEELRKQY 318
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 104/243 (42%), Gaps = 56/243 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + +F K GDI S+ + GKS+G+GFV Y E+A A++ L
Sbjct: 232 YVKNIDLDVSDDDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALND 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
G +LY + +E L+ + + NLY+KN+NDDVD+ +L+
Sbjct: 292 TDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGV--NLYIKNLNDDVDDEKLR 349
Query: 177 QYFSQCGIISSVKIMR-------------------------------------------- 192
F+ G I+S K+MR
Sbjct: 350 DMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDETKEETEKPEEAKDESKEDSDDKKDEK 409
Query: 193 ----TNRGISK------GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
T +G K GFGFVCFSNPDEA +A+ +N + KPLYVA+AQ K R +
Sbjct: 410 ADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKN 469
Query: 243 YLR 245
L
Sbjct: 470 QLE 472
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y++ E A+E+
Sbjct: 51 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 109 LNYTVIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDHAIDNK 150
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L ++K ++V
Sbjct: 151 ALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGH 210
Query: 234 AQTKRERTSYLRIMYA 249
K+ER S M A
Sbjct: 211 HIPKKERMSKFEEMKA 226
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 103/180 (57%), Gaps = 3/180 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 319 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAVEEMNG 378
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LYVKN++D +D+ +L+
Sbjct: 379 RDINGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGYQGVKLYVKNLDDTIDDEKLR 436
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS G I VK+M+ G SKGFGF+CFS+ ++A +A+ +NG KP+ +A+AQ+
Sbjct: 437 NEFSSFGSIIRVKVMQQE-GQSKGFGFICFSSLEDATKAMIEMNGRFLGSKPISIALAQS 495
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 227 FIKNLDKSIDNKTLYEHFSGFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 285
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ +++ + + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 286 RLLKSCKVFVGRFKNRKDREAE------LRSKASEFT------NIYIKNFGGDMDDERLK 333
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M +RG SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 334 DVFSKYGKTLSVKVMTDSRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 393
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ M+ +
Sbjct: 394 KVERQAELKQMFEQ 407
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 225 NVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 283
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 284 NGRLLKSCKVFVGRFKNRKDREAELR 309
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 101/193 (52%), Gaps = 14/193 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 139 FIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKH--- 195
Query: 117 ATVEGMELYAPSLRAGR-IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
V GM L + G I + + + + + T N+YVKNI+ DV + +
Sbjct: 196 --VNGMLLNEKKVFVGHHIPKKERMSKF--EEMKANFT------NIYVKNIDLDVSDEDF 245
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F + G I+S I R ++G S+GFGFV + + A+ A++ LN F + LYV AQ
Sbjct: 246 RDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQ 305
Query: 236 TKRERTSYLRIMY 248
K ER LR Y
Sbjct: 306 KKHEREEELRKQY 318
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 105/243 (43%), Gaps = 59/243 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + +F K GDI S+ + GKS+G+GFV Y E+A A++ L
Sbjct: 232 YVKNIDLDVSDEDFRDLFEKHGDITSASIARDDQGKSRGFGFVNYIKHEAASAAVDALND 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE---ILDKNLYVKNINDDVDEI 173
G +LY GR Q+ K + E+ NLY+KN+NDDVD+
Sbjct: 292 TDFRGQKLYV-----GRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDE 346
Query: 174 ELKQYFSQCGIISSVKIMR----------------------------------------- 192
+L+ F+ G I+S K+MR
Sbjct: 347 KLRDMFTPFGTITSAKVMRDAMPAAGSEDATDEKKDESKEESEEAKDESKEDSDDKKDEK 406
Query: 193 ----TNRGISK------GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
T +G K GFGFVCFSNPDEA +A+ +N + KPLYVA+AQ K R +
Sbjct: 407 ADKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKN 466
Query: 243 YLR 245
L
Sbjct: 467 QLE 469
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y++ E A+E+
Sbjct: 51 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 109 LNYTVIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDHAIDNK 150
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L ++K ++V
Sbjct: 151 ALHDTFAAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGH 210
Query: 234 AQTKRERTSYLRIMYA 249
K+ER S M A
Sbjct: 211 HIPKKERMSKFEEMKA 226
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 103/180 (57%), Gaps = 3/180 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 193 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LYVKN++D +D+ +L+
Sbjct: 253 RDINGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGYQGVKLYVKNLDDTIDDEKLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS G I VK+M+ G SKGFGF+CFS+ ++A +A+ +NG KP+ +A+AQ+
Sbjct: 311 NEFSSFGSIIRVKVMQQE-GQSKGFGFICFSSLEDATKAMIEMNGCFLGSKPISIALAQS 369
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSGFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ +++ + + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 160 KLLKSCKVFVGRFKNRKDREAE------LRSKASEFT------NIYIKNFGGDMDDERLK 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 208 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 267
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 268 KVERQAELKQMF 279
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSGFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 158 NGKLLKSCKVFVGRFKNRKDREAELR 183
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+ +
Sbjct: 146 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETGSSKGYGFVHYETDEAAQQAIKHVNG 205
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + +E A+F N+Y+KN+ DVT++
Sbjct: 206 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYIKNIAPDVTDD--------------- 250
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ + F G ++S I R G S+GFGFV F+ + A+ A+ LN FH + LY
Sbjct: 251 ---QFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAVEELNNKDFHGQELY 307
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 308 VGRAQKKHEREEELRKSY 325
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 112/239 (46%), Gaps = 51/239 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+A + + + +F GD+ SS + DGKS+G+GFV ++T E+A A+E+L
Sbjct: 239 YIKNIAPDVTDDQFRVLFEAHGDVTSSSIARDPDGKSRGFGFVNFTTHEAASAAVEELNN 298
Query: 117 ATVEGMELYA--------------PSLRAGRIQESASFN--NLYVKNLDDDVTEE----- 155
G ELY S A RI++++ + NLY+KNLDDDV +E
Sbjct: 299 KDFHGQELYVGRAQKKHEREEELRKSYEAARIEKASKYQGVNLYIKNLDDDVDDEKLRTM 358
Query: 156 ------ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKI----------MRTNRGISK 199
I + + +DD DE E K+ ++ + K N K
Sbjct: 359 FTEFGPITSAKVMRDSPSDDEDE-EGKEAEAEDKDKENKKADAEAEAAEAAEEENSDKEK 417
Query: 200 -------------GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
GFGFVCFSNPD+A +A+ +N + + KPLYVA+AQ K R S L
Sbjct: 418 KERKGSKKLGKSKGFGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLE 476
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y++ A+E+
Sbjct: 58 YVGELDPSVTEAMLFELFSQIGAVAS--IRVCRDAVTRRSLGYAYVNYNSTPDGEKALEE 115
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 116 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 157
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A +AI +NG+L ++K +YV
Sbjct: 158 ALHDTFAAFGNILSCKVAQDETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGH 217
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 218 HIPKKDRQSKFEEMKA 233
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V +++ + +A+
Sbjct: 56 SLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSL--GYAYVNYNSTPDGEKAL 113
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 114 EELNYTLIKGRP---------------CRIMWSQRDPALRKT 140
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D+ KL +IFS +G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNFGDDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ G LY RA + E + + L +Y+KN+++ +D+ +LK
Sbjct: 262 KSINGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ ++A +A++ +NG KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-VEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTKDRATFTNVFVKNF------------------GDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ FS G SVK++R G SKGFGFV + + A +A+ L+G + K L
Sbjct: 210 MDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 76 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 135
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 136 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 193
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 194 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQA 252
Query: 237 KR 238
+R
Sbjct: 253 RR 254
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 88/173 (50%), Gaps = 26/173 (15%)
Query: 75 SKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA-----PSL 129
S FG+I S KVV +G SKGY +V + + +A AI + + ++Y P
Sbjct: 1 SAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEE 59
Query: 130 RAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS 187
RA R ++ A+F N++VKN I DD+D+ +LK+ F + G S
Sbjct: 60 RAAEVRTRDRATFTNVFVKN------------------IGDDIDDEKLKELFCEYGPTES 101
Query: 188 VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
VK++R G SKGFGFV + + A +A+ L+G K LYV AQ K ER
Sbjct: 102 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 154
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 112/234 (47%), Gaps = 54/234 (23%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLYAA 117
+ L T D+++ +F KFG + SS + Q+ GKS+G+GFV +++ E A A+E+L
Sbjct: 249 IQLDVTDDDFRA--LFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEELNEK 306
Query: 118 TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEIE 174
G LY GR Q+ ++ + E+ NLY+KN++D+VD+ +
Sbjct: 307 EFHGQNLYV-----GRAQKKHEREEELRRSYEAARQEKASKYQGVNLYIKNLDDEVDDDK 361
Query: 175 LKQYFSQCGIISSVKIMRT----------------------------------------- 193
L+Q FS+ G I+S K+MR
Sbjct: 362 LRQLFSEFGPITSAKVMRETLAEGADEPEAKDAADAKENVKEDEEAAKTEGDEGDAKADK 421
Query: 194 --NRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G SKGFGFVCF NPD+A +A+ +N + + KPLYVA+AQ K R + L
Sbjct: 422 KPKLGKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKNQLE 475
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 102/199 (51%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+ +
Sbjct: 152 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNG 211
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + +E A+F N+YVKN+ DVT++
Sbjct: 212 MLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIQLDVTDD--------------- 256
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+ + F + G ++S + R G S+GFGFV F++ ++A++A+ LN FH + L
Sbjct: 257 ---DFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNL 313
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 314 YVGRAQKKHEREEELRRSY 332
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+T A+++
Sbjct: 64 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNTTSDGEKALDE 121
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 122 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNK 163
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 164 ALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 223
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 224 HIPKKDRQSKFEEMKA 239
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V ++ + +A+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSL--GYAYVNYNTTSDGEKAL 119
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
+ LN L +P RIM++++ P L T
Sbjct: 120 DELNYTLIKGRP---------------CRIMWSQRDPALRKT 146
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 96/196 (48%), Gaps = 19/196 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 152 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESGASKGYGFVHYETDEAAAQAIKH--- 208
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L E F ++ D E + N+YVKNI + E
Sbjct: 209 --VNGMLL----------NEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATEE 256
Query: 174 ELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
E ++ F + G ++S + R G S+GFGFV F N + A A++ LNG F + LYV
Sbjct: 257 EFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVG 316
Query: 233 IAQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 317 RAQKKHEREEELRRSY 332
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 129/295 (43%), Gaps = 77/295 (26%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + ++F KFGD+ S+ + ++ GKS+G+GFV + E A A+++L
Sbjct: 245 YVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDELN 304
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
+G +LY GR Q+ ++ + E+ NLYVKN++DD+D+
Sbjct: 305 GKDFKGQDLYV-----GRAQKKHEREEELRRSYEAARIEKASKYQGVNLYVKNLDDDIDD 359
Query: 173 IELKQYFSQCGIISSVKIMR---------------------------------------- 192
+L++ F G I+S K+MR
Sbjct: 360 EKLRELFQSFGSITSAKVMRDTPAETAEAEEKKEKDEEKNKENKDTKETKETKKEGEAET 419
Query: 193 ---------TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSY 243
+ G SKGFGFVCF+NPDEA +A++ +N + + KPLYVA+AQ K R S
Sbjct: 420 EEASAPKAKRSLGKSKGFGFVCFNNPDEATKAVSDMNQRMVNNKPLYVALAQRKDVRKSQ 479
Query: 244 L----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNG 288
L R+ A G+ P Y +A + PG + G +P G
Sbjct: 480 LEASIQARNQIRMQQAAAQAGM--------PQQYMQAPMFF-PPGAQQPGFLPQG 525
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 31/236 (13%)
Query: 25 GDLDSTDLLRLCSALIASIDVHSAMATPTFIP--------FTVNLASTIDNWKLHQIFSK 76
GD + L + + S D +A TPT P + L +++ L ++FS+
Sbjct: 24 GDANGAATLNTDVSNVNSEDQDAAGPTPTNAPHPQASASLYVGELDTSVTEAMLFELFSQ 83
Query: 77 FGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133
G + S +V +S+ +S GY +V Y+T A+E+L ++G R R
Sbjct: 84 IGSVASIRVCRDAISR--RSLGYAYVNYNTTADGEKALEELNYTLIKG--------RPCR 133
Query: 134 IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT 193
I S D + N+++KN++ +D L F+ G I S K+ +
Sbjct: 134 IMWSQR----------DPALRKNGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD 183
Query: 194 NRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
G SKG+GFV + + A +AI +NG+L ++K ++V K++R S M A
Sbjct: 184 ESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKA 239
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 96/181 (53%), Gaps = 12/181 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S +V ++ SKGYGFV + T+E+A NAI K
Sbjct: 35 FIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISK--- 91
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + GR L L D N+Y+KN D++D+ +L
Sbjct: 92 --VNGMLLNGKKVFVGRFIPRKERERL----LGDKARRFT---NVYIKNFGDELDDEKLV 142
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G ++S K+M G ++GFGFV F +P+ A +A+ LNG KPLYV AQ
Sbjct: 143 VIFDKYGKVTSAKVMVDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYVGRAQK 202
Query: 237 K 237
K
Sbjct: 203 K 203
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S ++ SKG+GFV F + AN AI+ +
Sbjct: 33 NVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYGFVHFETEEAANNAISKV 92
Query: 220 NGILFHQKPLYVA--IAQTKRER 240
NG+L + K ++V I + +RER
Sbjct: 93 NGMLLNGKKVFVGRFIPRKERER 115
>gi|419961|pir||JN0573 polyadenylate-binding protein - fruit fly (Drosophila melanogaster)
Length = 598
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I +KV+ +DGKSKG+GFV + T E+A A++ L
Sbjct: 174 YVKNFTEDFDDEKLKEFFEPYGKI--TKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNG 231
Query: 117 ATVEGMELYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
EG LY +A R QE F L K + V NLYVKN++D +D+
Sbjct: 232 KG-EGKSLYVARAQKKAERQQELKRKFEELKQKRHEFGV-------NLYVKNLDDTIDDD 283
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L+ FS G I+S K+ G SKGFGFVCF+ EA A+ LNG + LYVA+
Sbjct: 284 RLRIAFSPYGNITSAKV--DEEGRSKGFGFVCFNPESEATCAVTELNGRVVGS--LYVAL 339
Query: 234 AQTKRERTSYLRIMYAKQGPGLASTNFPVHP 264
AQ K ER + L Y + G+ P
Sbjct: 340 AQRKEERKADLASQYMRHMTGMRMQQLGQQP 370
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 25/181 (13%)
Query: 67 NWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126
N ++ FS FG+I S KV + G SKGYGFV T+E+A +I+K+ + G ++Y
Sbjct: 97 NKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVH--TEEAANTSIDKVNGMLLNGKKVYV 154
Query: 127 PSLRAGRIQESAS--FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGI 184
+ QE + F N+YVKN +D D+ +LK++F G
Sbjct: 155 GKFIPRKEQEEKAKLFTNVYVKNF------------------TEDFDDEKLKEFFEPYGK 196
Query: 185 ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
I+ K+M G SKGFGFV F + A A+ LNG K LYVA AQ K ER L
Sbjct: 197 IT--KVMSKEDGKSKGFGFVAFETTEAAEAAVQALNG-KGEGKSLYVARAQKKAERQQEL 253
Query: 245 R 245
+
Sbjct: 254 K 254
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
+LYV ++ DV+E L FS G +I + + T R + G+ +V F P +A RA++T
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVIRVCRDVITRRSL--GYAYVNFQQPADAERALDT 60
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+N L KP +RIM++++ P L
Sbjct: 61 MN--LVRNKP---------------IRIMWSQRDPSL 80
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 100/199 (50%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 146 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNG 205
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKNLD +V+ E
Sbjct: 206 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVSNE--------------- 250
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E ++ F + G I+S I R G S+GFGFV F + A A+ LN + + L
Sbjct: 251 ---EFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEELNDKEYKGQKL 307
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR +
Sbjct: 308 YVGRAQKKHEREEELRKQH 326
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 111/245 (45%), Gaps = 61/245 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + + N + ++F K+G+I S+ + + GKS+G+GFV + ESA A+E+L
Sbjct: 239 YVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFVNFVKHESAAAAVEELN 298
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDE 172
+G +LY GR Q+ K + E+ NLYVKN+ DD+D+
Sbjct: 299 DKEYKGQKLYV-----GRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 173 IELKQYFSQCGIISSVKIMRTNRG------------------------------------ 196
+L+ F G I+S ++MR G
Sbjct: 354 EKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSD 413
Query: 197 ----------------ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
SKGFGFVCFSNPDEA++A+ +N + + KPLYVA+AQ K R
Sbjct: 414 KVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 241 TSYLR 245
S L
Sbjct: 474 KSQLE 478
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 58 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 116 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 157
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 217
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 218 HIAKKDRQSKFEEMKA 233
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 99/196 (50%), Gaps = 19/196 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 153 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDETGASKGYGFVHYETDEAASQAIKH--- 209
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L E F ++ D E + N+YVKNI + +
Sbjct: 210 --VNGMLL----------NEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATDE 257
Query: 174 ELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
E ++ F + G ++S + R T+ S+GFGFV F N + A +A++ LNG F + LYV
Sbjct: 258 EFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQDLYVG 317
Query: 233 IAQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 318 RAQKKHEREEELRKSY 333
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 52/236 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG-KSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + + ++F KFGD+ S+ + D KS+G+GFV + E A A+++L
Sbjct: 246 YVKNIPVEATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELN 305
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
+G +LY GR Q+ K+ + E+ NLYVKN++DDVD+
Sbjct: 306 GKDFKGQDLYV-----GRAQKKHEREEELRKSYEAARIEKASKYQGVNLYVKNLDDDVDD 360
Query: 173 IELKQYFSQCGIISSVKIMRTNR------------------------------------- 195
+L++ F+ G I+S K+MR
Sbjct: 361 DKLRELFTPFGSITSAKVMRDTPAETAEAEEKEKKDSEKNKENIKEGETAEAENTEDKPK 420
Query: 196 ------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G SKGFGFVCF+NP+EA++A+ +N + + KPLYVA+AQ K R + L
Sbjct: 421 SEKRTVGKSKGFGFVCFNNPEEASKAVTDMNQRMVNNKPLYVALAQRKDVRKNQLE 476
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L S++ L ++FS+ G + S + V +D +S GY +V Y+T A+E+
Sbjct: 65 YVGELDSSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNTTIDGEKALEE 122
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 123 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 164
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K ++V
Sbjct: 165 ALHDTFAAFGNILSCKVAQDETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGH 224
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 225 HIPKKDRQSKFEEMKA 240
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V ++ + +A+
Sbjct: 63 SLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSL--GYAYVNYNTTIDGEKAL 120
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 121 EELNYTLIKGRP---------------CRIMWSQRDPALRKT 147
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 102/204 (50%), Gaps = 35/204 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A NAI+
Sbjct: 148 FIKNLDGAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETAEAANNAIK---- 203
Query: 117 ATVEGMELYAPSL----------RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKN 165
V GM L + R + +E A+F N+YVKN+D +VT++
Sbjct: 204 -AVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFTNVYVKNIDLEVTDD---------- 252
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILF 224
E ++ F + G I+S + N G S+GFGFV F + A +A++ LN +
Sbjct: 253 --------EFRELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDELNDKDW 304
Query: 225 HQKPLYVAIAQTKRERTSYLRIMY 248
+ LYV AQ K ER LR Y
Sbjct: 305 KGQKLYVGRAQKKHEREEELRKQY 328
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLYAA 117
++L T D ++ ++F K+G I S+ + + GKS+G+GFV + ESA A+++L
Sbjct: 245 IDLEVTDDEFR--ELFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDELNDK 302
Query: 118 TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE---ILDKNLYVKNINDDVDEIE 174
+G +LY GR Q+ K + E+ NLYVKN++DDVD+ +
Sbjct: 303 DWKGQKLYV-----GRAQKKHEREEELRKQYEAARAEKQSKYQGVNLYVKNLHDDVDDEK 357
Query: 175 LKQYFSQCGIISSVKIMRTNRGISK 199
L+ F+ G I+S K+MR + + +
Sbjct: 358 LRDMFAPFGTITSAKVMRDTQPVGR 382
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y++ + A+E+
Sbjct: 60 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNSSDDGEKALEE 117
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 118 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDGAIDNK 159
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L ++K ++V
Sbjct: 160 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGH 219
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 220 HIPKKDRMSKFEEMKA 235
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
D VD+ L + + I KI+ G SKGFGFVCFSNPDEA +A+ +N + + K
Sbjct: 418 DGVDK--LTKEMDKVTIKGEQKIL----GKSKGFGFVCFSNPDEATKAVTEMNQKMMNGK 471
Query: 228 PLYVAIAQTKRERTSYLR 245
PLYVA+AQ K R S L
Sbjct: 472 PLYVALAQRKDVRKSQLE 489
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 41/127 (32%)
Query: 135 QESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-- 192
Q SAS LYV LD VTE +L EL FS G ++S+++ R
Sbjct: 54 QNSAS---LYVGELDPSVTEAML---------------FEL---FSSIGQVASIRVCRDA 92
Query: 193 -TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
T R + G+ +V +++ D+ +A+ LN L KP RIM++++
Sbjct: 93 VTRRSL--GYAYVNYNSSDDGEKALEELNYTLIKGKP---------------CRIMWSQR 135
Query: 252 GPGLAST 258
P L T
Sbjct: 136 DPALRKT 142
>gi|444720785|gb|ELW61557.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 232
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 105/198 (53%), Gaps = 16/198 (8%)
Query: 45 VHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQ 104
+H + + FI NL +IDN L+ F FG+I S KVV ++G SKGYGFV + TQ
Sbjct: 48 LHKSEVSNIFIK---NLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQ 103
Query: 105 ESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVK 164
E+ AIEK+ + +++ ++ + +E+ L E N+Y+K
Sbjct: 104 EAVERAIEKMSGMLLNDFKVFVGQFKSRKEREA---------ELGARAKEFT---NVYIK 151
Query: 165 NINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF 224
N +D+D+ LK F + G VK+M G SKGFGFV F ++A +A+N +NG
Sbjct: 152 NFGEDMDDEHLKDLFGKFGPALRVKVMTDESGKSKGFGFVSFERHEDAQKAVNEMNGKEL 211
Query: 225 HQKPLYVAIAQTKRERTS 242
+ K +Y+ AQ K E+ +
Sbjct: 212 NGKQIYIGRAQKKVEQQT 229
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ +D L F G I S K++ G SKG+GFV F + RAI +
Sbjct: 55 NIFIKNLGKSIDNKALYDTFPAFGNILSCKVVCDENG-SKGYGFVHFETQEAVERAIEKM 113
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
+G+L + ++V ++++ER + L
Sbjct: 114 SGMLLNDFKVFVGQFKSRKEREAEL 138
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 116/200 (58%), Gaps = 12/200 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ N + I++ L +F +G I S+KV+ GK KG+GFV + E+A A+E L
Sbjct: 199 YVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALN 258
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
G LY GR Q+ +K + + E +++ NLYVKN++D++D
Sbjct: 259 GNDNSGKILYV-----GRAQKKIE-RQAELKEKFERIRMERINRYQGVNLYVKNLDDNID 312
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L++ F+Q G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYV
Sbjct: 313 DERLRKEFAQFGTITSAKVM-TEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYV 371
Query: 232 AIAQTKRERTSYLRIMYAKQ 251
A+AQ K +R ++L Y ++
Sbjct: 372 ALAQRKEDRKAHLASQYMQR 391
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 104/201 (51%), Gaps = 26/201 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S K+V + G S+GYGFV + T+E+A AIEK+
Sbjct: 107 FIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNG 165
Query: 117 ATVEGMELYAPSL--RAGRIQ----ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G +++ R R++ + FNN+YVKN +++ +E
Sbjct: 166 MLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDET-------------- 211
Query: 171 DEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
L+ F G I S K+M + G KGFGFV F +P+ A +A+ LNG K L
Sbjct: 212 ----LRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKIL 267
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
YV AQ K ER + L+ + +
Sbjct: 268 YVGRAQKKIERQAELKEKFER 288
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L + FS G + S +V +S GY +V + A A++ +
Sbjct: 19 YVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 78
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
T++G R RI S +L + N+++KN++ +D L
Sbjct: 79 FDTIKG--------RPIRIMWSQRDPSLRKSGVG----------NVFIKNLDKSIDNKAL 120
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S KI+ G S+G+GFV F + A AI +NG+L + K ++V
Sbjct: 121 YDTFSAFGNILSCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNGMLLNGKKVFVGRFM 179
Query: 236 TKRERTSYL 244
++RER L
Sbjct: 180 SRRERLEVL 188
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 103/189 (54%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+G+GFV + T E+A AI +
Sbjct: 114 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTMNG 172
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 173 MLLNDRKVFVGHFKSRREREA----ELGARALEF--------TNIYVKNLPVDVDEQGLQ 220
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 221 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 280
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 281 RVERQNELK 289
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 102/212 (48%), Gaps = 28/212 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 206 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 265
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 266 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 320
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNP--------------DEANRAINTL 219
+L++ FS G+I+S K G+ G+ F ++P +EA +A+ +
Sbjct: 321 KLRKEFSPYGVITSAK------GVGAGYPFWGSADPVGTCSPSAALSGLKEEATKAVTEM 374
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
NG + KPLYVA+AQ K ER + L Y ++
Sbjct: 375 NGRIVGTKPLYVALAQRKEERKAILTNQYMQR 406
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ D +D L FS G I S K++ G S+GFGFV F + A +AINT+
Sbjct: 112 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG-SRGFGFVHFETHEAAQQAINTM 170
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V +++RER + L
Sbjct: 171 NGMLLNDRKVFVGHFKSRREREAEL 195
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 94/184 (51%), Gaps = 15/184 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +IDN ++ FS FG+I + V + G S+GYGFVQ+ ++E+A AIEK+
Sbjct: 131 YIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVNG 190
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++ Y+ D + + +NLYVKN N+D E +K
Sbjct: 191 ILCNSQKVHVVK---------------YIPRRDREQEKATQFRNLYVKNFNEDFSEQNMK 235
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G I+S KIM G SK FGFV F NP A A+ LNG K LYVA A +
Sbjct: 236 EMFEPYGRITSHKIMTDEEGRSKRFGFVAFENPQSALAAVIALNGKQLGDKYLYVARALS 295
Query: 237 KRER 240
K ER
Sbjct: 296 KIER 299
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+Y+KN+ +D + FS G I + + + G S+G+GFV F + + A AI +N
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 221 GILFHQKPLYVAIAQTKR----ERTSYLRIMYAK 250
GIL + + ++V +R E+ + R +Y K
Sbjct: 190 GILCNSQKVHVVKYIPRRDREQEKATQFRNLYVK 223
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 149/323 (46%), Gaps = 52/323 (16%)
Query: 67 NWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126
N L ++F KFG I S+ + ++ KS+G+GFV + E+A A+E + +E
Sbjct: 200 NDDLKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEAMNEKEIE----TD 255
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN----LYVKNINDDVDEIELKQYFSQC 182
L GR + +K + D + +E +KN LY+K++ +DV E L+ FS+
Sbjct: 256 RKLFVGRAMKKHE-RERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDALRDKFSKF 314
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G I+S+KIM N G S+GFGFV F + DEA AI ++G + KPLYVA+A K +R
Sbjct: 315 GTITSLKIMTDNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALALRKVDRQK 374
Query: 243 YL---RIMYAKQGPGLASTNFP-----------VHPTLY--------QRALQVYQAPGFR 280
L R M + G P P ++ Q+ Q APG
Sbjct: 375 QLASRRTMPGQMPMGYLPFMMPPPQANMMRMGNRFPPMFMMQQQQQQQQQQQQQHAPGM- 433
Query: 281 HGGMIPNGFSSP-----------------PPSPLFLTRAGQAAANNLTNGNQRAAANNSM 323
+G M G +P P P+ + A N NQ AN
Sbjct: 434 NGNMRGRGRGNPNKGNGRGRGQGPMPSQGQPMPMQSAPSAARVAAPAPNNNQDEFAN--- 490
Query: 324 LAVASPDERKDILGQGLYPLVKK 346
LA + E+K++LG+ L+PL+++
Sbjct: 491 LAHMTDAEQKNLLGEKLFPLIQQ 513
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FG I S KV + G+S+GYGFV + +E A AI+
Sbjct: 99 FIKNLNKEIDNKALYDTFSAFGTILSCKVAADEKGESRGYGFVHFEKEEDAQKAID---- 154
Query: 117 ATVEGMELYAPSL-------RAGRIQESA-SFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
TV G L + R R Q+ ++ N+YVKNL D ND
Sbjct: 155 -TVNGKMLLKQVVTVTKFLSRKEREQQGGRTYTNIYVKNLPDSYA------------TND 201
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH-QK 227
D LK+ F + G I+S + + S+GFGFV F N + AN A+ +N +
Sbjct: 202 D-----LKKLFEKFGTITSTFLAKDENDKSRGFGFVNFENSEAANAAVEAMNEKEIETDR 256
Query: 228 PLYVAIAQTKRERTSYLRIMYAK 250
L+V A K ER L+ ++ K
Sbjct: 257 KLFVGRAMKKHERERELKRIHDK 279
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 35/214 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ +L + L++ FS+ G + S + V +D S+ GY +V Y A +A+E+
Sbjct: 11 YVGDLHPEVTEATLYEFFSQMGSVIS--IRVCRDAVSRQSLGYAYVNYQQHADAKHALEE 68
Query: 114 LYAATVEGME---LYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
L + ++A A R + N+++KN+N ++
Sbjct: 69 LNFEKIHDKPCRIMWAQRNPAARRSGAG---------------------NIFIKNLNKEI 107
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D L FS G I S K+ +G S+G+GFV F ++A +AI+T+NG + ++ +
Sbjct: 108 DNKALYDTFSAFGTILSCKVAADEKGESRGYGFVHFEKEEDAQKAIDTVNGKMLLKQVVT 167
Query: 231 VAIAQTKRERT-----SYLRIMYAKQGPGLASTN 259
V +++ER +Y I Y K P +TN
Sbjct: 168 VTKFLSRKEREQQGGRTYTNI-YVKNLPDSYATN 200
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSN 208
+ E + +LYV +++ +V E L ++FSQ G + S+++ R +S+ G+ +V +
Sbjct: 1 MAEHQQNASLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRD--AVSRQSLGYAYVNYQQ 58
Query: 209 PDEANRAINTLNGILFHQKPLYVAIAQ 235
+A A+ LN H KP + AQ
Sbjct: 59 HADAKHALEELNFEKIHDKPCRIMWAQ 85
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 104/183 (56%), Gaps = 5/183 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N +D+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNFGDDMDDDKLKELFSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +D+ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKTRPPGVPIYIKNLDETIDDEKLK 319
Query: 177 QYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G IS K+M +G KGFG VCFS+ +EA +A++ +NG + KPL V + Q
Sbjct: 320 EEFSSFGSISRAKVMVEVEQG--KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Query: 236 TKR 238
+R
Sbjct: 378 ARR 380
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 113/242 (46%), Gaps = 44/242 (18%)
Query: 7 ALNN-NDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTI 65
ALN N I G PF L D RL + I +I F NL +I
Sbjct: 75 ALNTMNFDLINGKPFRLMWSQPDD----RLRKSGIGNI-------------FIKNLDKSI 117
Query: 66 DNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
DN L +FS FG I S KVV +G SKGY +V + + +A AI + + ++Y
Sbjct: 118 DNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVY 176
Query: 126 A-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
P RA R ++ A+F N++VKN DD+D+ +LK+
Sbjct: 177 VGRFKFPEERAAEVRTRDRATFTNVFVKNF------------------GDDMDDDKLKEL 218
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
FS+ G SVK++R G SKGFGFV + + A +A+ L+G K LYV AQ K
Sbjct: 219 FSEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKI 278
Query: 239 ER 240
ER
Sbjct: 279 ER 280
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 25/196 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 104 FIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVNG 163
Query: 117 ATVEGMELYAPSL-----RAGRIQESAS-FNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G +++ R + E A F N+YVKN +D T+++
Sbjct: 164 MLLNGKKVFVGKFIPRKEREKELGEKAKLFTNVYVKNFGEDFTDDM-------------- 209
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPL 229
LK+ F + G I+S ++ S+GFGFV F +P+ A RA+ LNG + K L
Sbjct: 210 ----LKEMFEKYGPITSHTVVVNKDQKSRGFGFVAFEDPEAAERAVEDLNGKEIIEGKQL 265
Query: 230 YVAIAQTKRERTSYLR 245
YV AQ K ER L+
Sbjct: 266 YVGRAQKKAERQQELK 281
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 84/152 (55%), Gaps = 12/152 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + L ++F K+G I S VVV++D KS+G+GFV + E+A A+E L
Sbjct: 197 YVKNFGEDFTDDMLKEMFEKYGPITSHTVVVNKDQKSRGFGFVAFEDPEAAERAVEDLNG 256
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
+ EG +LY GR Q+ A +K + + E +++ NLYVKN++D +D
Sbjct: 257 KEIIEGKQLYV-----GRAQKKAE-RQQELKRKFEQLKMERMNRYQGVNLYVKNLDDTID 310
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGF 203
+ L++ FS G I+S K+M R SKGFGF
Sbjct: 311 DERLRKEFSPFGTITSAKVMLEER-RSKGFGF 341
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 31/192 (16%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L S + L + FS G + S +V +S GY +V + A A++ + T
Sbjct: 19 DLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALDTMNFDT 78
Query: 119 VEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
++G + PSLR + N+++KN++ ++D
Sbjct: 79 LKGRPIRIMWSQRDPSLRKSGVG------------------------NVFIKNLDKNIDN 114
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+ FS G I S K+ + G SKG+GFV F + A ++I+ +NG+L + K ++V
Sbjct: 115 KAMYDTFSAFGNILSCKVAQDESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVG 174
Query: 233 IAQTKRERTSYL 244
++ER L
Sbjct: 175 KFIPRKEREKEL 186
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 101/181 (55%), Gaps = 3/181 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N + +D+ KL +IFS +G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ G LY RA + E + + L +Y+KN+++ +D+ +LK
Sbjct: 262 KSINGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ ++A +A++ +NG KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-VEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQA 378
Query: 237 K 237
+
Sbjct: 379 R 379
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN +D
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNF------------------GND 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ FS G SVK++R G SKGFGFV + + A +A+ L+G + K L
Sbjct: 210 MDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 23/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ ++G SKGYGFV Y Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-----NLYVKNINDDVD 171
+ L+ ++ + +E+ E+ +K N+Y+KN DD+D
Sbjct: 160 KLLRDSTLFVARFKSRKDREA-----------------ELREKPAEFTNVYIKNFGDDMD 202
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L+ FS+ G SVK+M+ G SK FGFV F + A A+ +NG + + ++V
Sbjct: 203 DESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFV 262
Query: 232 AIAQTKRERTSYLRIMYAK 250
AQ K ER + L+ M+ +
Sbjct: 263 GRAQKKVERQAELKEMFEQ 281
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 99/179 (55%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L +FSK+G S KV+ GKSK +GFV + + ++A NA+E +
Sbjct: 193 YIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + + + K LY+KN++D +D+ L+
Sbjct: 253 RDINGQTIFVGRAQK-KVERQAELKEMFEQMKKERIRARQAAK-LYIKNLDDTIDDETLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I VK+M+ G SKGFG +CF +P+ A +A+ +NG + KPL +A+ Q
Sbjct: 311 KEFSVFGSICRVKVMQEA-GQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQ 368
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 19/154 (12%)
Query: 92 KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDD 151
+S GYG+V + A A+E + ++G + + + N+++KNLD
Sbjct: 49 RSLGYGYVNFLQVGDAQKALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLD-- 106
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDE 211
+ I +K LY ++FS G I S K+M G SKG+GFV + +
Sbjct: 107 --KSIDNKTLY--------------EHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRA 149
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
A+RAI +NG L L+VA +++++R + LR
Sbjct: 150 ADRAIEEMNGKLLRDSTLFVARFKSRKDREAELR 183
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ ++G S+GYGFV Y Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++ ++ + +E+ +++ + T N+Y+KN+ D++D+ LK
Sbjct: 160 KLLRDCTVFVDRFKSRKDREAE------LRSKTSEFT------NVYIKNLGDNMDDEGLK 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M+ + G SKGFGFV F N + A A+ +NG + + ++V AQ
Sbjct: 208 NIFSKYGQTLSVKVMKDDNGKSKGFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQK 267
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 268 KVERQAELK 276
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 111/217 (51%), Gaps = 22/217 (10%)
Query: 32 LLRLCSALI----------ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQ 81
LLR C+ + A + ++ T +I NL +D+ L IFSK+G
Sbjct: 161 LLRDCTVFVDRFKSRKDREAELRSKTSEFTNVYIK---NLGDNMDDEGLKNIFSKYGQTL 217
Query: 82 SSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFN 141
S KV+ +GKSKG+GFV + E+A NA+E++ + G ++ GR Q+
Sbjct: 218 SVKVMKDDNGKSKGFGFVSFYNHEAARNAVEEMNGQDINGQTIFV-----GRAQKKVERQ 272
Query: 142 NLYVKNLDDDVTEEILDK---NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGIS 198
+ + E I + LY+KN+++ +D+ L++ FS G I VK+M+ G S
Sbjct: 273 AELKEKFEQMKKERIRARQAAKLYIKNLDETIDDETLRREFSSFGSICRVKVMQEA-GQS 331
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
KGFG +CF +P+ A +A+ +NG + K L +A+ Q
Sbjct: 332 KGFGLICFFSPEAAAKAMAEMNGRILGSKALNIALGQ 368
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M G S+G+GFV + + A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEG-SRGYGFVHYQDQSAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V +++++R + LR
Sbjct: 158 NGKLLRDCTVFVDRFKSRKDREAELR 183
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++++DV E L + F+ G + S++I R + R + G+ +V F D+A +A+
Sbjct: 11 SLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSL--GYAYVNFLQLDDAQKAL 68
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLR 245
+T+N L K + + +Q R +YLR
Sbjct: 69 DTMNFDLIQGKSIRLMWSQ----RDAYLR 93
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 108/190 (56%), Gaps = 25/190 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F +L ++IDN +L+ +F+ FG I S KVV ++G KG+GFV + T+E+A AI+++
Sbjct: 110 FVNHLDASIDNKELYDLFAGFGTILSCKVVSDENG-PKGHGFVHFETREAADKAIKEMNG 168
Query: 117 ATVEGMELYA-----PSLRAG-RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ V+ +++ P+ R R + F N+YVKN D T+E L
Sbjct: 169 SLVKERKVFVGQFKRPNQREEERRAKMEQFTNVYVKNFADGTTDEYL------------- 215
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+E+ FSQ G +SSVKIM + G SKGFGF+ F +A RAI +NG F + +Y
Sbjct: 216 --LEI---FSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIY 270
Query: 231 VAIAQTKRER 240
V+ AQ K+ER
Sbjct: 271 VSRAQKKKER 280
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 107/195 (54%), Gaps = 3/195 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N A + L +IFS++G + S K++ GKSKG+GF+++ A AIE++
Sbjct: 202 YVKNFADGTTDEYLLEIFSQYGPLSSVKIMTDDSGKSKGFGFIRFECHADAKRAIEEVNG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
G ++Y RA + +E ++ + + + +L+VKN+ + D+ L+
Sbjct: 262 KQFGGRKIYVS--RAQKKKEREEELQQKLEEIKQNRIAKYHGMSLFVKNLAESTDDEHLR 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F+ G ++S K++ G KGFGFV FS+ +EA +A+ ++G + +PLYV+ A+
Sbjct: 320 KIFAPFGTVTSAKVI-VKGGRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSYARY 378
Query: 237 KRERTSYLRIMYAKQ 251
K+ER +Y Y K+
Sbjct: 379 KQERRAYFASYYGKK 393
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ +V E L + FS G I SV++ R ++R + G+G+V F P++A A+
Sbjct: 20 SLYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSL--GYGYVNFHRPEDAGHAL 77
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
NT+N + H KP +RIM+ + P L
Sbjct: 78 NTMNFDVLHGKP---------------VRIMWCHRDPSL 101
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 83/196 (42%), Gaps = 32/196 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAI---- 111
+ +L + L++ FS G I S +V +S GYG+V + E A +A+
Sbjct: 22 YVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTMN 81
Query: 112 -EKLYAATVEGMELYA-PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ L+ V M + PSLR + N++V +++
Sbjct: 82 FDVLHGKPVRIMWCHRDPSLRRSGV------------------------GNVFVNHLDAS 117
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D EL F+ G I S K++ G KG GFV F + A++AI +NG L ++ +
Sbjct: 118 IDNKELYDLFAGFGTILSCKVVSDENG-PKGHGFVHFETREAADKAIKEMNGSLVKERKV 176
Query: 230 YVAIAQTKRERTSYLR 245
+V + +R R
Sbjct: 177 FVGQFKRPNQREEERR 192
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEFT--------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RMERQNELK 277
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 106/182 (58%), Gaps = 5/182 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N ID+ KL ++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ +L+
Sbjct: 202 FVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVK-NLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+++G L + +I+ A + + L D + +Y+KN+++ +++ +L
Sbjct: 262 KSIDGKVLCVGRAQK-KIERLAELRRRFERLKLKDKTRPPGVP--IYIKNLDETINDEKL 318
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ FS G IS K+M G KGFG VCFS+ +EA++A+N +NG + K L+V + Q
Sbjct: 319 KEEFSLFGSISRAKVM-MEVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQ 377
Query: 236 TK 237
+
Sbjct: 378 AR 379
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 102/201 (50%), Gaps = 26/201 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNF------------------GDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ FS+ G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVL 269
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
V AQ K ER + LR + +
Sbjct: 270 CVGRAQKKIERLAELRRRFER 290
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEF--------TNIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 ELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
+ ER + L+ + +
Sbjct: 269 RVERQNELKRRFEQ 282
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L ++FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQELFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMR 192
+L++ FS G+I+S K R
Sbjct: 309 KLRKEFSPYGVITSAKKRR 327
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ D +D L FS G I S K+ G S+GFGFV F + A +AINT+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V +++RER + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAEL 183
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
+T+N + +P +RIM++++ PGL +
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGLRKS 96
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 99/199 (49%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 146 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNG 205
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKNLD +V+ E
Sbjct: 206 MLLNEKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNLDTEVSNE--------------- 250
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E ++ F + G I+S I R G S+GFGF F + A A+ LN + + L
Sbjct: 251 ---EFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAVEELNDKEYKGQKL 307
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR +
Sbjct: 308 YVGRAQKKHEREEELRKQH 326
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 110/245 (44%), Gaps = 61/245 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + + N + ++F K+G+I S+ + + GKS+G+GF + ESA A+E+L
Sbjct: 239 YVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFGFFYFLKHESAAAAVEELN 298
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
+G +LY GR Q+ K + E+ NLYVKN+ DD+D+
Sbjct: 299 DKEYKGQKLYV-----GRAQKKHEREEELRKQHEAARVEKASKYQGVNLYVKNLTDDIDD 353
Query: 173 IELKQYFSQCGIISSVKIMRTNRG------------------------------------ 196
+L+ F G I+S ++MR G
Sbjct: 354 EKLRDLFISFGNITSARVMRDTAGDPGSESEKEKESANKENVKDEAKKESGEEDSADKSD 413
Query: 197 ----------------ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
SKGFGFVCFSNPDEA++A+ +N + + KPLYVA+AQ K R
Sbjct: 414 KVEKSDSKNATEKKLGKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 473
Query: 241 TSYLR 245
S L
Sbjct: 474 KSQLE 478
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 58 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 116 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 157
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L ++K ++V
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGH 217
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 218 HIAKKDRQSKFEEMKA 233
>gi|74762343|sp|Q6NV95.1|PAB1L_HUMAN RecName: Full=Putative protein PABPC1-like; AltName:
Full=Polyadenylate-binding protein pseudogene 2
gi|158258146|dbj|BAF85046.1| unnamed protein product [Homo sapiens]
Length = 269
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 106/198 (53%), Gaps = 9/198 (4%)
Query: 75 SKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRI 134
SK G S KV+ + GKSKG+GFV + E A++ + G + Y L ++
Sbjct: 33 SKVGPASSVKVITDEGGKSKGFGFVSFERHEDPQTAMD-VNGKEFSGNQTYI-CLAPKKV 90
Query: 135 QESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN 194
+E + + D +T N+ VKN+++ +D+ L++ FS GII+S +M
Sbjct: 91 EEQTELKCKFEQMKQDRITR-YQGANVCVKNLDESIDDERLQKEFSPFGIINSANVMMEG 149
Query: 195 RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPG 254
G SK FGFVCFS+P+E +A+ +NG + KPL+VA+AQ K +R ++ Y ++
Sbjct: 150 -GCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQK--- 205
Query: 255 LASTNFPVHPTL--YQRA 270
+AS HP + YQ A
Sbjct: 206 MASVRAVPHPVINPYQPA 223
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +ID+ +L + FS FG I S+ V++ + G SK +GFV +S+ E A+ + V
Sbjct: 120 NLDESIDDERLQKEFSPFGIINSANVMM-EGGCSKRFGFVCFSSPEEVAKAVTAMNGKIV 178
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNL 148
L+ +L + Q A F N Y++ +
Sbjct: 179 ASKPLHV-ALAQCKEQRLAHFTNQYMQKM 206
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 114/233 (48%), Gaps = 43/233 (18%)
Query: 90 DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLD 149
DGKS+ +GFV + + A A E L + E + G+ Q+ + +K
Sbjct: 5 DGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFV-----GKAQKKYE-REVELKQRF 58
Query: 150 DDVTEEILDK----NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVC 205
+ +E DK NLY+KN++D + + ++K+ FS G I+S K+MR GIS+G GFV
Sbjct: 59 EQSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVA 118
Query: 206 FSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRI------------------M 247
FS P+EA+RA+ +NG + KPLYVA+AQ K +R + L+ M
Sbjct: 119 FSTPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVGRMPM 178
Query: 248 YAKQGPGLASTNF---------PVHPTL-YQRALQVYQAPGFRHGGM-IPNGF 289
Y GPGL F P P YQ+ L PG R GG +PN F
Sbjct: 179 YPPTGPGLGQQIFYGQGPPAIMPPQPGFGYQQQL----VPGMRPGGAPMPNFF 227
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +I + K+ ++FS FG I S KV+ +G S+G GFV +ST E A A+ ++
Sbjct: 75 YIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNG 134
Query: 117 ATVEGMELY 125
V LY
Sbjct: 135 KMVASKPLY 143
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 191 MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
MR G S+ FGFV F N D+A +A LNG F K +V AQ K ER L+
Sbjct: 1 MRDGDGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELK 55
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 107/197 (54%), Gaps = 5/197 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+T NL + L ++F+ FG I S+ V+ DG+SK +GFV Y E A A+EKL
Sbjct: 215 YTKNLPKEFTDDDLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEYAEEAVEKLNG 274
Query: 117 ATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ + LY RA R QE A + K +D + + NLY+KN++ +D+ L
Sbjct: 275 KIISDVALYVG--RAKRKQERQAELKEKFDKERNDKIRKS-KGCNLYLKNLDCSIDDEYL 331
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG-ILFHQKPLYVAIA 234
+ F + I + K+M + G SKGFGFV F+ + AN+A++ N L K LYV +A
Sbjct: 332 RNLFGRFDDIGTCKVMVDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTKLLYVCVA 391
Query: 235 QTKRERTSYLRIMYAKQ 251
Q K ER++ L +A++
Sbjct: 392 QRKEERSAILAAQFARR 408
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 100/201 (49%), Gaps = 24/201 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL I LHQ+FS+FG I S KV +GKSKGYGFVQ+ ++ESA +A+ L
Sbjct: 122 FIKNLEPNIVAKSLHQMFSRFGIILSCKVATDLNGKSKGYGFVQFVSEESAKDAMNALNG 181
Query: 117 ATVEG------MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
G ++L+ I ++ F N+Y KNL + T++
Sbjct: 182 KLANGNGKQLYVDLFIRREERQHIGGASKFTNVYTKNLPKEFTDD--------------- 226
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+L + F+ G I+S +M+ G SK FGFV + + A A+ LNG + LY
Sbjct: 227 ---DLCRVFAPFGTITSAVVMKDGDGESKCFGFVNYEKTEYAEEAVEKLNGKIISDVALY 283
Query: 231 VAIAQTKRERTSYLRIMYAKQ 251
V A+ K+ER + L+ + K+
Sbjct: 284 VGRAKRKQERQAELKEKFDKE 304
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 31/209 (14%)
Query: 45 VHSAMATPTFIP----------FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKS 93
V + P +IP + NL +++ +L +FS+ + S ++ + G+S
Sbjct: 12 VMTPFGPPLYIPGPSFGSSVSVYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRS 71
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT 153
GY +V + + E A A+E V G S+R F+N D
Sbjct: 72 LGYAYVNFHSHEDAKVALEYFNFTVVNGK-----SIRV-------MFSN------RDPTL 113
Query: 154 EEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEAN 213
NL++KN+ ++ L Q FS+ GII S K+ G SKG+GFV F + + A
Sbjct: 114 RRSGAANLFIKNLEPNIVAKSLHQMFSRFGIILSCKVATDLNGKSKGYGFVQFVSEESAK 173
Query: 214 RAINTLNGILF--HQKPLYVAIAQTKRER 240
A+N LNG L + K LYV + + ER
Sbjct: 174 DAMNALNGKLANGNGKQLYVDLFIRREER 202
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 104/194 (53%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEF--------TNIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
+ ER + L+ + +
Sbjct: 269 RVERQNELKRRFEQ 282
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMR 192
+L++ FS G+I+S K R
Sbjct: 309 KLRKEFSPYGVITSAKKRR 327
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+ D +D L FS G I S K+ G S+GFGFV F + A +AINT+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V +++RER + L
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAEL 183
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
+T+N + +P +RIM++++ PGL +
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGLRKS 96
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 108/187 (57%), Gaps = 15/187 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N ID+ KL+++FS++G +S KV+ GKSKG+GFV+Y T E+A A+ +L+
Sbjct: 201 FVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHG 260
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN------LYVKNINDDV 170
+++G L + +I+ A + + ++ +KN +Y+KN+++ +
Sbjct: 261 KSIDGKVLCVGRAQK-KIERLAELRRRFER-------LKLKEKNRPSGVPIYIKNLDETI 312
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
++ +LK+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + K L+
Sbjct: 313 NDEKLKEEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLH 371
Query: 231 VAIAQTK 237
V + Q +
Sbjct: 372 VTLGQAR 378
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 101/201 (50%), Gaps = 26/201 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 108 FIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 166
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R +E A+F N++VKN DD
Sbjct: 167 VRLNNRQVYVGRFKFPEERAAEVRTRERATFTNVFVKNF------------------GDD 208
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +L + FS+ G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 209 IDDEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVL 268
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
V AQ K ER + LR + +
Sbjct: 269 CVGRAQKKIERLAELRRRFER 289
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 106 NIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 164
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 165 NGVRLNNRQVYVGRFKFPEERAAEVR 190
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 124/283 (43%), Gaps = 77/283 (27%)
Query: 9 NNNDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNW 68
N N S I GT + L + + ++T + +I NL +DN
Sbjct: 96 NLNHSKIDGTTYRLMISERETTKRVSGAGNIILK-----------------NLHPNVDNK 138
Query: 69 KLHQIFSKFGDIQSSKVVVSQDGKS-KGYGFVQYSTQESALNAIEKLYAATVEGMELYA- 126
L+ FS++G++ S +V G S KGYGFV Y T +A AI + + G E++A
Sbjct: 139 SLYDTFSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHAS 198
Query: 127 --------PSLRAGRIQESASFNNLYVKNLDDDVTE------------------------ 154
SL + Q+ F N+YVKNL DVTE
Sbjct: 199 HQVLKNEKESLLSHNDQQHCRFTNVYVKNLSSDVTEDDLGELFSTIGPVSSVLVQRDDQH 258
Query: 155 ---------------------EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR- 192
E+ DK+ + +++ D++ L F G I+S KIM+
Sbjct: 259 KPKGFGFVNFELPEDAERAVNELHDKDFFAEDVTDEI----LINNFLPYGTITSAKIMKD 314
Query: 193 TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ G KGFGFVCFS+ DEANRA+ +NG KP+YVA+AQ
Sbjct: 315 ESTGAPKGFGFVCFSSSDEANRAVAEMNGRFISSKPIYVALAQ 357
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 25/187 (13%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
LA ID L + FG+++S +V S +S GY + + T + A E L + +
Sbjct: 46 LAPHIDEAMLKE---HFGNVKSVQVCRDSVTNQSLGYAHINFYTPQDCSAAFENLNHSKI 102
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIELKQY 178
+G R+ S + + T+ + N+ +KN++ +VD L
Sbjct: 103 DGTTY--------RLMIS-----------ERETTKRVSGAGNIILKNLHPNVDNKSLYDT 143
Query: 179 FSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
FS+ G + S ++ + G KG+GFV + A RAI+ +NG + K ++ + K
Sbjct: 144 FSRWGNVISCRVFNKLTGGSVKGYGFVNYDTYAAAERAISFVNGKMLFGKEVHASHQVLK 203
Query: 238 RERTSYL 244
E+ S L
Sbjct: 204 NEKESLL 210
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 27/204 (13%)
Query: 66 DNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV------ 119
D +L + FSKFG I S +VV +D K + + F ++ +SA A+E L V
Sbjct: 274 DESRLRETFSKFGSITS--LVVRKDPKGRLFAFCNFADHDSAKAAVEALNGKRVTDAGAI 331
Query: 120 ------------------EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNL 161
EG ++ + SA + + ++ D + NL
Sbjct: 332 KEGEDSGAEEKEEEGQKREGDQILFVGPHQSKAHRSAMLRAKF-EQMNQDRNDRFQGVNL 390
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
Y+KN++D +D+ +L+Q F G I+S K+MR RG+S+ FGFVCF +P+EA +A+ ++
Sbjct: 391 YIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHL 450
Query: 222 ILFHQKPLYVAIAQTKRERTSYLR 245
L KPLYV +A+ + +R L+
Sbjct: 451 KLVKGKPLYVGLAERREQRLMRLQ 474
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 18/166 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FG+I S KV V +G SKGYGFV Y +ESA +AI+K+
Sbjct: 174 FVKNLDKNIDNKALYDTFSLFGNILSCKVAVDDNGHSKGYGFVHYENEESARSAIDKVNG 233
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV-DEIEL 175
+ G +Y +++ + D E N+Y+KN+ DE L
Sbjct: 234 MLIGGKTVYV---------------GPFIRRAERDNLAEAKYTNVYIKNMPSAWEDESRL 278
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
++ FS+ G I+S+ + + +G + F F F++ D A A+ LNG
Sbjct: 279 RETFSKFGSITSLVVRKDPKG--RLFAFCNFADHDSAKAAVEALNG 322
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 19/193 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L ++F+ G + S +V + +S GY +V Y + A +++ L
Sbjct: 86 YVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTLN 145
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G RI ++ D + + N++VKN++ ++D L
Sbjct: 146 YTVIKGQPC--------RI--------MWCHR--DPSLRKSGNGNIFVKNLDKNIDNKAL 187
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV + N + A AI+ +NG+L K +YV
Sbjct: 188 YDTFSLFGNILSCKVAVDDNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFI 247
Query: 236 TKRERTSYLRIMY 248
+ ER + Y
Sbjct: 248 RRAERDNLAEAKY 260
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ +ID+ KL Q+F FG I S+KV+ + G S+ +GFV + + E A A+ +++
Sbjct: 391 YIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHL 450
Query: 117 ATVEGMELY 125
V+G LY
Sbjct: 451 KLVKGKPLY 459
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 139/329 (42%), Gaps = 81/329 (24%)
Query: 91 GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD 150
GKS+G+GFV + E A A + +++ A + + D
Sbjct: 6 GKSRGFGFVSFERHEDAQKADNGFLKE----------NWIQKKVERQAELKRKFEQMKQD 55
Query: 151 DVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPD 210
+T NLYVKN++D +D+ L++ FS G I+S K+M G SKGFGFVCFS+P+
Sbjct: 56 RMTR-YQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMLEG-GRSKGFGFVCFSSPE 113
Query: 211 EANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPV-------- 262
EA +A+ +NG + KPLYVA+AQ K ER ++L Y ++ + + PV
Sbjct: 114 EATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAP 173
Query: 263 ------------------HPTLYQRALQVYQAPGFRHGGMIPNGF---------SSPPPS 295
+P Q A Q+ +P + G+ P F S+P P
Sbjct: 174 PSGYFMTAIPQTQNRGAYYPAAGQMA-QLRPSPRWPTQGVRPQHFQNMQSAMRSSAPRPQ 232
Query: 296 --------------------------PLFLTRAGQAAANNLTNGNQRAAA-------NNS 322
P T A AN + +Q A S
Sbjct: 233 MFGSMRPSSQLPRMTSSQRVATQAMGPRAATTAPSVTANPVRGVSQYKYATGGQEPLTTS 292
Query: 323 MLAVASPDERKDILGQGLYPLVKKLKVNF 351
MLA A E+K +LG+ L+PL++ + ++
Sbjct: 293 MLAAAPLHEQKQMLGERLFPLIQAMHLSL 321
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 66 YVKNLDDGIDDERLRKEFSPFGTITSAKVML-EGGRSKGFGFVCFSSPEEATKAVTEMNG 124
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 125 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 155
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 157/367 (42%), Gaps = 94/367 (25%)
Query: 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNA 110
T T + N ID F K G S+K++ + G+ +G + ++ Q+ A+ A
Sbjct: 41 TKTCPIYVKNFVKEIDE---DDFFGKCG--ASTKIINNDCGQQTEFGLLPFNKQKDAIRA 95
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK------NLYVK 164
++K+ +GM++Y L +I+E + + E L K NLYVK
Sbjct: 96 VDKM-----KGMDIY---LAQAKIKEK--------RQTEFSKKPEPLHKPRYNSVNLYVK 139
Query: 165 NINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF 224
N++ ++D+ LK+ F+ G I+S K+MR G SKGFGFVCFS P EA +A++ +NG +
Sbjct: 140 NLSYEIDDYRLKKEFAPFGTITSAKVMREG-GRSKGFGFVCFSTPAEARKALSEMNGKIL 198
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHP--TLYQR-------ALQVY- 274
KPLYVA AQ K+ER L Y ++ N V+P L R A+Q +
Sbjct: 199 ASKPLYVAWAQRKQERQVSLAQQYTQRMEKAWIPNTKVNPNQALLSRCSMAPIPAVQNHS 258
Query: 275 ---------QAPGFRH------GGMIPNGFS-SPPPSPLFLTRAGQ----AAANNLTNGN 314
Q F+ G P+ F P P TR + A NL G
Sbjct: 259 EDSLCRIPKQTAQFKQRCYRNAQGTAPHSFQYMPRAHPQISTRKYKLIPTKTAVNLVRGI 318
Query: 315 QRAAANN------------------------------------SMLAVASPDERKDILGQ 338
A + N S+L ASP E+K +LG
Sbjct: 319 MSATSRNKYAAGDCNTELHSEKQTQAAMQHPAICVQGQEPLTISLLVSASPHEQKQMLGV 378
Query: 339 GLYPLVK 345
L+PLV+
Sbjct: 379 RLFPLVQ 385
>gi|170032722|ref|XP_001844229.1| RNA-binding protein [Culex quinquefasciatus]
gi|167873059|gb|EDS36442.1| RNA-binding protein [Culex quinquefasciatus]
Length = 201
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 7/131 (5%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL+VKN+++ +D+ L++ FS+CG+++S K+MR G+S+G+GFVCF P EA RAI +
Sbjct: 38 NLFVKNLHEAIDDGRLREEFSRCGLVTSAKVMRLENGVSRGYGFVCFRTPYEAQRAIFLM 97
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF 279
NG + KPL+V IAQ K ER L + K T + QR L + QA G
Sbjct: 98 NGRILDGKPLFVGIAQKKEERRKVLEAQFRK-----GKTEKELQEETRQRKLALVQAMGI 152
Query: 280 RHGGMIPNGFS 290
G + P F+
Sbjct: 153 --GFLYPKIFA 161
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ +L + FS+ G + S+KV+ ++G S+GYGFV + T A AI +
Sbjct: 40 FVKNLHEAIDDGRLREEFSRCGLVTSAKVMRLENGVSRGYGFVCFRTPYEAQRAIFLMNG 99
Query: 117 ATVEGMELY 125
++G L+
Sbjct: 100 RILDGKPLF 108
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 13/178 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ FS FG+I S KVV ++G SKG+GFV + T+E+A AIEK+
Sbjct: 102 FIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ T+E N+Y+KN D +D+ L
Sbjct: 161 MLLNDRKVFVGRFKSQKEREAELGTG----------TKEFT--NVYIKNFGDRMDDETLN 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
F + G I SVK+M G SKGFGFV F ++A +A++ +NG + K +YV A
Sbjct: 209 GLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRA 266
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+N +D L FS G I S K++ G SKG GFV F + A RAI +
Sbjct: 100 NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENG-SKGHGFVHFETEEAAERAIEKM 158
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + L
Sbjct: 159 NGMLLNDRKVFVGRFKSQKEREAEL 183
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 27/204 (13%)
Query: 66 DNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV------ 119
D +L + F+K+G I S +VV +D K + + F ++ +SA A+E L V
Sbjct: 275 DEARLRETFAKYGSITS--LVVRKDPKGRLFAFCNFADHDSAKAAVEALNGKRVTDAGAI 332
Query: 120 ------------------EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNL 161
EG ++ + SA + + ++ D + NL
Sbjct: 333 KEGEDSGAEEKDEEGQKREGEQILFVGPHQSKAHRSAMLRAKF-EQMNQDRNDRFQGVNL 391
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
Y+KN++D +D+ +L+Q F G I+S K+MR RG+S+ FGFVCF +P+EA +A+ ++
Sbjct: 392 YIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHL 451
Query: 222 ILFHQKPLYVAIAQTKRERTSYLR 245
L KPLYV +A+ + +R L+
Sbjct: 452 KLVKGKPLYVGLAERREQRLMRLQ 475
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 18/166 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FG+I S KV V ++G SKGYGFV Y +ESA +AI+K+
Sbjct: 175 FVKNLDKNIDNKALYDTFSLFGNILSCKVAVDENGHSKGYGFVHYENEESARSAIDKVNG 234
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV-DEIEL 175
+ G +Y +++ + D E N+Y+KN+ DE L
Sbjct: 235 MLIGGKTVYV---------------GPFIRRAERDNLAETKYTNVYIKNMPSAWEDEARL 279
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
++ F++ G I+S+ + + +G + F F F++ D A A+ LNG
Sbjct: 280 RETFAKYGSITSLVVRKDPKG--RLFAFCNFADHDSAKAAVEALNG 323
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 86/193 (44%), Gaps = 19/193 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L ++F+ G + S +V + +S GY +V Y + A +++ L
Sbjct: 87 YVGDLHQDVTEAMLFEVFNSVGPVTSIRVCRDTVTRRSLGYAYVNYQGIQDAERSLDTLN 146
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G RI ++ D + + N++VKN++ ++D L
Sbjct: 147 YTVIKGQPC--------RI--------MWCHR--DPSLRKSGNGNIFVKNLDKNIDNKAL 188
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKG+GFV + N + A AI+ +NG+L K +YV
Sbjct: 189 YDTFSLFGNILSCKVAVDENGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFI 248
Query: 236 TKRERTSYLRIMY 248
+ ER + Y
Sbjct: 249 RRAERDNLAETKY 261
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ +ID+ KL Q+F FG I S+KV+ + G S+ +GFV + + E A A+ +++
Sbjct: 392 YIKNMDDSIDDEKLRQLFEPFGSITSAKVMRDERGVSRCFGFVCFMSPEEATKAVTEMHL 451
Query: 117 ATVEGMELY 125
V+G LY
Sbjct: 452 KLVKGKPLY 460
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 20/210 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-- 114
F N+ KL + F FG++ S+K Q S G+GFV ++T E+A A++++
Sbjct: 189 FIKNIPFEWTEDKLREEFEGFGEVVSAKPKEVQG--SLGFGFVNFATHEAAAAAVKEMND 246
Query: 115 --YAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-------NLYVKN 165
+ T +G E+ L GR Q+ A + L E +D+ NLYVKN
Sbjct: 247 KEFTVTEDGEEV-TKVLFVGRAQKKAERE----RELRAKYEAEKIDRIAKFQGVNLYVKN 301
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILF 224
++D V + L+ FS G I+S ++M+ + GIS+GFGFVC+S P++A RA+N +NG +
Sbjct: 302 LDDTVTDDVLRDEFSAMGTITSARVMKDLKTGISRGFGFVCYSTPEDATRAVNEMNGKII 361
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAKQGPG 254
KP++VA+AQ + R + L + QG G
Sbjct: 362 LGKPIFVALAQRRDVRRAQLEAQH-NQGRG 390
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 95/202 (47%), Gaps = 30/202 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL IDN +L+ FS FG+I S KVV + G SKGYG+V Y T E+A +AIEKL
Sbjct: 100 FVKNLHEGIDNKQLYDTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLD 159
Query: 116 AATVEGMELYAPS-LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
++G E+ +R A + N+++KN+ + TE+ +
Sbjct: 160 GMLIDGKEVQVGVFMRRDNRPGQADWTNVFIKNIPFEWTED------------------K 201
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH--------Q 226
L++ F G + S K S GFGFV F+ + A A+ +N F
Sbjct: 202 LREEFEGFGEVVSAKPKEVQG--SLGFGFVNFATHEAAAAAVKEMNDKEFTVTEDGEEVT 259
Query: 227 KPLYVAIAQTKRERTSYLRIMY 248
K L+V AQ K ER LR Y
Sbjct: 260 KVLFVGRAQKKAERERELRAKY 281
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYA 116
+L ++ L +IF+ G + S + V +D +S GY +V Y A A++ +
Sbjct: 15 DLLPEVNEGFLFEIFNAVGPVAS--IRVCRDAVTRRSLGYAYVNYHQVADAERALDSMNF 72
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G + RI S ++ + N++VKN+++ +D +L
Sbjct: 73 TEIKG--------KPCRIMWSQRDPSMRRSGVG----------NIFVKNLHEGIDNKQLY 114
Query: 177 QYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K++ G+SKG+G+V + + A AI L+G+L K + V +
Sbjct: 115 DTFSLFGNILSCKVVTDKATGLSKGYGYVHYETNEAAASAIEKLDGMLIDGKEVQVGVFM 174
Query: 236 TKRER 240
+ R
Sbjct: 175 RRDNR 179
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + SKGYGFV Y T E+A NAI+ +
Sbjct: 136 FIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNG 195
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ + R + +E A+F N+Y+KN+D ++T++
Sbjct: 196 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDD--------------- 240
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + F G I+S + G S+GFGFV ++N + A A+ +N + LY
Sbjct: 241 ---EFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKSQKLY 297
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 298 VGRAQKKHEREEELRKQY 315
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 110/250 (44%), Gaps = 66/250 (26%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ I + + +F FG+I S+ + QDGKS+G+GFV Y+ ESA A+ ++
Sbjct: 229 YIKNIDLEITDDEFRTMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNE 288
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
V+ +LY GR Q+ K + E+ NLYVKN+ DD+D+
Sbjct: 289 KEVKSQKLYV-----GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDE 343
Query: 174 ELKQYFSQCGIISSVKIMR----------------------------------------- 192
+L+ F+ G I+S K+MR
Sbjct: 344 KLRDLFTPYGTITSAKVMRDAAERSPTPEAEEKEAAKETKDSEEKEVKTEETAEVKTEAA 403
Query: 193 ---TNRGIS--------KGFG------FVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
T G + K FG FVCFS+PDEA++A+ +N + + KPLYVA+AQ
Sbjct: 404 EKKTEEGEATEEKKTEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQ 463
Query: 236 TKRERTSYLR 245
K R S L
Sbjct: 464 RKDVRRSQLE 473
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 48 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 105
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN+++ +D
Sbjct: 106 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDNAIDNK 147
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 148 ALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 207
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 208 HISKKDRQSKFEEMKA 223
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 149/324 (45%), Gaps = 50/324 (15%)
Query: 66 DNWK---LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
D W LHQ FSK+G+I S +++ D K + + FV + A A+E E +
Sbjct: 223 DTWTEDDLHQTFSKYGEITS--LLLKSDDKGRRFAFVNFVDTNMAKAAMEGENGVKFESV 280
Query: 123 ELYAPSLRAGRIQESASFNNL---YVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
E P + + ++ + L Y N D + + NLY+KN++DD D+ L+ F
Sbjct: 281 E--EPMMVCQHMDKARRYAMLKAQYDSNAQDQ-RNKFMGVNLYIKNLDDDFDDDGLRDLF 337
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
Q G ++S K+MR + G+S+GFGFVCFS PDEA +A+ ++ L KPLYV +A+ + +
Sbjct: 338 KQYGTVTSSKVMRDHNGVSRGFGFVCFSRPDEATKAVAGMHLKLVKNKPLYVGLAEKREQ 397
Query: 240 RTSYLRIMYAKQGPGLASTNFPVHPTLYQRAL--QVY--QAPGFRHG------GMIPNGF 289
R S ++ +Q + + P + LY + Q Y GFR G+ P G
Sbjct: 398 RASRMQ-QRNRQNDMMQYGDRPGYVPLYPPEMVPQGYFNHQVGFRPTVPAQPMGVGPRGM 456
Query: 290 SSPPPSPLFLTRAGQAAANNLTNGNQ-------------------RAAANNSMLAVASPD 330
P P+ R G A+ + G + R N A A P
Sbjct: 457 RMVAPMPMMHGR-GTASPHAAAQGRRTPVKQVPLSGFKFTAQARNRTELPNGAPAAAVPT 515
Query: 331 ER--------KDILGQGLYPLVKK 346
+R K ++G+ L+P+V +
Sbjct: 516 QRPIDGAAMHKQMIGERLFPIVAR 539
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 21/195 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID L+ FS FG I S KV + G SKGYGFV Y+T+ESA AIEK+
Sbjct: 127 FVKNLDKAIDTKALYDTFSHFGTILSCKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVNG 186
Query: 117 ATVEGMEL-YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ ++ AP LR R + +++ +++ NLYV+N D E +L
Sbjct: 187 MLIGNSQVSVAPFLR--RNERTSTVGDVFT--------------NLYVRNFPDTWTEDDL 230
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH--QKPLYVAI 233
Q FS+ G I+S+ + ++G + F FV F + + A A+ NG+ F ++P+ V
Sbjct: 231 HQTFSKYGEITSLLLKSDDKG--RRFAFVNFVDTNMAKAAMEGENGVKFESVEEPMMVCQ 288
Query: 234 AQTKRERTSYLRIMY 248
K R + L+ Y
Sbjct: 289 HMDKARRYAMLKAQY 303
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 23/206 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + L+++F+ G + S +V S KS GY +V Y + A A+E L
Sbjct: 39 YVGNLLPEVTEAMLYEVFNGIGPVASIRVCRDSLTRKSLGYAYVNYYNFQDAEAALECLN 98
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S D + N++VKN++ +D L
Sbjct: 99 YIEIKG--------QPARIMWSER----------DPSLRKSGTGNIFVKNLDKAIDTKAL 140
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G SKG+GFV ++ + A AI +NG+L + VA
Sbjct: 141 YDTFSHFGTILSCKVAIDSLGNSKGYGFVHYTTEESAKEAIEKVNGMLIGNSQVSVAPFL 200
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFP 261
+ ERTS + ++ L NFP
Sbjct: 201 RRNERTSTVGDVFTN----LYVRNFP 222
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 92/165 (55%), Gaps = 13/165 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 76 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 134
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 135 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 182
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
F + G SVK+M G SKGFGFV F ++A +A++ +NG
Sbjct: 183 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 227
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 32/182 (17%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA-- 126
L++ FS G I S +V +S GY +V + A A++ + ++G +
Sbjct: 1 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 60
Query: 127 ----PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
PSLR + N+++KN++ +D L FS
Sbjct: 61 SQRDPSLRKSGVG------------------------NIFIKNLDKSIDNKALYDTFSAF 96
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G I S K++ G SKG+GFV F + A RAI +NG+L + + ++V ++++ER +
Sbjct: 97 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 155
Query: 243 YL 244
L
Sbjct: 156 EL 157
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + SKGYGFV Y T E+A NAI+ +
Sbjct: 136 FIKNLDNAIDNKALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNG 195
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ + R + +E A+F N+Y+KN+D ++T++
Sbjct: 196 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDLEITDD--------------- 240
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + F G I+S + G S+GFGFV ++N + A A+ +N + LY
Sbjct: 241 ---EFRVMFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLY 297
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 298 VGRAQKKHEREEELRKQY 315
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 110/247 (44%), Gaps = 67/247 (27%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
++L T D +++ +F FG+I S+ + QDGKS+G+GFV Y+ ESA A+ ++
Sbjct: 233 IDLEITDDEFRV--MFEAFGEITSATLSHDQDGKSRGFGFVNYANHESAEAAVAEMNEKE 290
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEIEL 175
V+ +LY GR Q+ K + E+ NLYVKN+ DD+D+ +L
Sbjct: 291 VKTQKLYV-----GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDIDDEKL 345
Query: 176 KQYFSQCGIISSVKIMR------------------------------------------- 192
+ F+ G I+S K+MR
Sbjct: 346 RDLFTPYGTITSAKVMRDAAERSPTPEAEDKETKGSEEKEVKTEETAEVKTEETTEEKKT 405
Query: 193 --------TNRGISKGFG------FVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
+ K FG FVCFS+PDEA++A+ +N + + KPLYVA+AQ K
Sbjct: 406 EEQGEASEEKKAEKKAFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNAKPLYVALAQRKD 465
Query: 239 ERTSYLR 245
R S L
Sbjct: 466 VRRSQLE 472
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 48 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 105
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN+++ +D
Sbjct: 106 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDNAIDNK 147
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 148 ALHDTFAAFGNILSCKVAQDEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 207
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 208 HISKKDRQSKFEEMKA 223
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 92/165 (55%), Gaps = 16/165 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ F FG+I S K+ G+S+GYGFVQ+ ESA +AI+KL
Sbjct: 126 FIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKL-- 183
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLD-DDVTEEILDKNLYVKNINDDVDEIEL 175
GM I + F +V+ D ++V+ I N+YVKN++D V + EL
Sbjct: 184 ---NGM----------LINDKKVFVGPFVRKQDRENVSSNIKFSNVYVKNLSDTVTDDEL 230
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
K+ F + G I+S +MR + G S+ FGFV F N D A +A+ LN
Sbjct: 231 KEMFGKYGTITSAVVMRDSDGKSRCFGFVNFENADAAAQAVQELN 275
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG-KSKGYGFVQYSTQESALNA 110
P + +L ++ + +L +FS+ G + S +V + KS GY +V Y+ Q A A
Sbjct: 33 PATSLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARA 92
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+E L + G + RI S D + + N+++KN++ +
Sbjct: 93 LELLNFTPINGKPI--------RIMYSNR----------DPSSRKSGTGNIFIKNLDKSI 134
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D L F G I S KI G S+G+GFV F + A AI+ LNG+L + K ++
Sbjct: 135 DNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVF 194
Query: 231 VAIAQTKRER 240
V K++R
Sbjct: 195 VGPFVRKQDR 204
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 98/187 (52%), Gaps = 7/187 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ L T+D + + FSKFG I S+ + ++G++ + F + + A+ AIE +
Sbjct: 206 YIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKNGRA--FAFCNFEKHDDAVKAIEASHD 263
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
VEG+ L R Q S L K + + L NLYV+N + + E +L
Sbjct: 264 QEVEGVTQPGEKLYVQRAQPRSERLIALRQKYMQC----QSLGNNLYVRNFDAEFTEKDL 319
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F + G+I S ++M GIS+GFGFV F N D+AN A+ +NG + + KPL V IAQ
Sbjct: 320 NELFKEYGVIRSCRVMTDANGISRGFGFVSFENADQANAALREMNGRMLNGKPLVVNIAQ 379
Query: 236 TKRERTS 242
+ +R +
Sbjct: 380 RRDQRLT 386
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 98/204 (48%), Gaps = 32/204 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ +L IF KFG+I S KV+ + GKS+GYGFV + ++A AIEK+
Sbjct: 112 FVKNLKEEVDSRELSLIFKKFGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNG 171
Query: 117 ----ATVEGMELYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
A + LY + R R+ A+F N+Y+K L V +++++K
Sbjct: 172 DKEHADADKAALYVANFIRRNARLAALVANFTNVYIKQLLPTVDKDVIEK---------- 221
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT-----LNGILF 224
+FS+ G I+S I + G + F F F D+A +AI + G+
Sbjct: 222 --------FFSKFGGITSAAICKDKNG--RAFAFCNFEKHDDAVKAIEASHDQEVEGVTQ 271
Query: 225 HQKPLYVAIAQTKRERTSYLRIMY 248
+ LYV AQ + ER LR Y
Sbjct: 272 PGEKLYVQRAQPRSERLIALRQKY 295
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 29/184 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L I+ +L IF +G I + +V +++Q +S GYG+V Y SA A+E+
Sbjct: 24 YVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQ--RSLGYGYVNYDDVNSASKAMEE 81
Query: 114 L-YAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
L + E R ++ S S N++VKN+ ++VD
Sbjct: 82 LNFKRVGEKCIRIMWQQRDPALRYSGS-------------------GNIFVKNLKEEVDS 122
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH----QKP 228
EL F + G I S K+M G S+G+GFV F + D A AI +NG H +
Sbjct: 123 RELSLIFKKFGEILSCKVMDDESGKSRGYGFVHFKDDDAAKAAIEKMNGDKEHADADKAA 182
Query: 229 LYVA 232
LYVA
Sbjct: 183 LYVA 186
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 13/236 (5%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
T+D + + FSKFG I S+ + ++G++ + F + + A+ AIE+ + VEG+
Sbjct: 213 TVDKAIIEKFFSKFGGITSAAICKDKNGRA--FAFCNFEKHDDAVKAIEEFHDHEVEGVT 270
Query: 124 LYAPSLRAGRIQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
L R Q S L K + + L NLYV+N + + E +L + F +
Sbjct: 271 QPGEKLYVQRAQPRSERLIALRQKYMQC----QSLGNNLYVRNFDPEFTEKDLNELFKEY 326
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G+I S ++M G+S+GFGFV F N D+AN A+ ++G + + KPL V IAQ + +R +
Sbjct: 327 GVIRSCRVMTDANGVSRGFGFVSFENADQANAALREMSGRMLNGKPLVVNIAQRRDQRFT 386
Query: 243 YLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSPLF 298
LR+ ++ L +HP + Q+ P R G P G P P+
Sbjct: 387 MLRLQLQQR---LQMMMRQIHPPPFGMPRQM---PQRRRGRQHPRGHDQMPSLPVM 436
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 18/199 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ +L IF KFG+I S KV+ + G S+GYGFV + +A +AIE +
Sbjct: 112 FVKNLKGEVDSRELSLIFKKFGEILSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNG 171
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T E A I+ +A L V N N+Y+K I VD+ ++
Sbjct: 172 VTEYADEKKTALYVANFIRRNARLAAL-VANF----------TNVYIKQILPTVDKAIIE 220
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI-----NTLNGILFHQKPLYV 231
++FS+ G I+S I + G + F F F D+A +AI + + G+ + LYV
Sbjct: 221 KFFSKFGGITSAAICKDKNG--RAFAFCNFEKHDDAVKAIEEFHDHEVEGVTQPGEKLYV 278
Query: 232 AIAQTKRERTSYLRIMYAK 250
AQ + ER LR Y +
Sbjct: 279 QRAQPRSERLIALRQKYMQ 297
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 27/183 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ +L I +L +IF +G I + +V +++Q +S GYG+V Y SA A+E+
Sbjct: 24 YVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQ--RSLGYGYVNYDNANSATKAMEE 81
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ V +R Q + Y N N++VKN+ +VD
Sbjct: 82 MNFKRVG-----EKCIRIMWQQRDPALR--YSGN-----------GNVFVKNLKGEVDSR 123
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH----QKPL 229
EL F + G I S K+M G S+G+GFV F + + A AI ++NG+ + + L
Sbjct: 124 ELSLIFKKFGEILSCKVMDDESGNSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTAL 183
Query: 230 YVA 232
YVA
Sbjct: 184 YVA 186
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 94/149 (63%), Gaps = 7/149 (4%)
Query: 116 AATVE---GMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDD 169
AA VE G+ L L GR Q+ + + + + E+ NLY+KN++D
Sbjct: 2 AAAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDS 61
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
VD+ +LK+ FS+ G ++S K+M +G+S+GFGFV +SNP+EA RA++ +NG + +KPL
Sbjct: 62 VDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 121
Query: 230 YVAIAQTKRERTSYLRIMYAK-QGPGLAS 257
Y+A+AQ K +R ++L+ ++++ + PG S
Sbjct: 122 YIALAQRKEDRRAHLQALFSQIRAPGPMS 150
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 45/69 (65%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ++D+ KL ++FS++G++ SSKV+++ G S+G+GFV YS E AL A+ ++
Sbjct: 54 YLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNG 113
Query: 117 ATVEGMELY 125
+ LY
Sbjct: 114 KMIGRKPLY 122
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 99/188 (52%), Gaps = 22/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +IDN ++ FS FG+I + V +DG S+GYGFV + T+E+A AIEK+
Sbjct: 116 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEKVNG 175
Query: 117 ATVEGMELYAPSL--RAGRIQESAS-FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+++ R R QE A+ F NLYVKNL ++ TE+
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLGEEFTEQ------------------ 217
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVA 232
L++ F G I+S K+M + G S+ FGFV + NP A A+ L+G L K LYVA
Sbjct: 218 HLREMFEPYGRITSHKLMLDDEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVA 277
Query: 233 IAQTKRER 240
A +K ER
Sbjct: 278 RALSKAER 285
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
+ +Y+KN+ +D + FS G I + + + G S+G+GFV F + A AI
Sbjct: 113 RKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEK 172
Query: 219 LNGILFHQKPLYVAIAQTKR----ERTSYLRIMYAK 250
+NG+L + + ++V +R E+ ++ + +Y K
Sbjct: 173 VNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVK 208
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 22/187 (11%)
Query: 93 SKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQES------ASFNNLYVK 146
SKGYGFV + TQE+A AIEK+ + +++ ++ + +E+ F N+Y+K
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 150
Query: 147 NLDDDVTEEILDKNLYVK-----NINDDVDEIELKQYFSQCGIIS------SVKIMRTNR 195
N +D+ +E L K+L+ K ++ DE + F G +S + K+M
Sbjct: 151 NFGEDMDDERL-KDLFGKFGPALSVKVMTDESGKSKGF---GFVSFERHEDAQKVMMEG- 205
Query: 196 GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ K ER ++L Y ++ +
Sbjct: 206 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASV 265
Query: 256 ASTNFPV 262
+ PV
Sbjct: 266 RAVPNPV 272
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESA 107
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A
Sbjct: 148 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 198
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 92/165 (55%), Gaps = 13/165 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV +++G SKGYGFV + T+E+ + AIEK
Sbjct: 103 FIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENG-SKGYGFVHFETEEAGIRAIEK--- 158
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V GM L + G+ + +K + + V + N+Y+KN D DE L+
Sbjct: 159 --VNGMLLNDKKVFVGKFLTRSE----RIKKMGERVRQFT---NVYIKNFGDKYDEKTLQ 209
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
F + G++ SV +MR G S+GFGFV + + +EA A+ +NG
Sbjct: 210 VMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNG 254
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 36/180 (20%)
Query: 70 LHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126
L++ FS+ G + S +V V+++ +S GY +V + A A++ + ++G +
Sbjct: 28 LYEKFSQAGPVLSIRVCRDVITR--RSLGYAYVNFQQPADAERALDTMNYDPIKGRPIRI 85
Query: 127 ------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFS 180
PSLR + N+++KN++ +D L FS
Sbjct: 86 MWSQRDPSLRKSGV------------------------GNIFIKNLDKSIDNKALYDTFS 121
Query: 181 QCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
G I S K+ N SKG+GFV F + RAI +NG+L + K ++V T+ ER
Sbjct: 122 AFGNILSCKV-SCNENGSKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFVGKFLTRSER 180
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D L +F K+G ++S V+ +DG S+G+GFV Y + E A A+E +
Sbjct: 195 YIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRDGNSRGFGFVAYDSHEEAQAAVEAMNG 254
Query: 117 ATVEG 121
+EG
Sbjct: 255 QEIEG 259
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FSQ G + S+++ R T R S G+ +V F P +A RA+
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRR--SLGYAYVNFQQPADAERAL 70
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N +P +RIM++++ P L
Sbjct: 71 DTMNYDPIKGRP---------------IRIMWSQRDPSL 94
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 104/211 (49%), Gaps = 11/211 (5%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
T+D + + FSKFG I SS ++G+ + F + E A+ AIE + V+G+
Sbjct: 222 TVDKEVIEKFFSKFGGITSSATCKDKNGRV--FAFCNFEKHEDAVKAIEASHEQFVDGVV 279
Query: 124 LYAPSLRAGRIQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
L R Q S L K + + L NLYV+N + + E L + F +
Sbjct: 280 PPGEKLYVQRAQPRSERLIALRQKYMQC----QTLGNNLYVRNFDPEFTEENLHELFKEY 335
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G+I S ++M G S+GFGFV F N D+AN A+ +NG + + KPL V IAQ + +R
Sbjct: 336 GVIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRRDQRFM 395
Query: 243 YLRIMYAKQGPGLA----STNFPVHPTLYQR 269
LR+ + ++ + S F H L QR
Sbjct: 396 MLRLQFQQRLQAMMRRMHSMPFVSHGHLPQR 426
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-- 114
F NL + +D+ +L IF KFGDI S KV+ ++GKS+GYGFV + +A AIE +
Sbjct: 120 FVKNLKNEVDSRELSVIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNG 179
Query: 115 ---YAATVEGMELYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A + M LY + R R+ A+F N+Y+K + V +E+++K
Sbjct: 180 EKDHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTVDKEVIEK--------- 230
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT-----LNGIL 223
+FS+ G I+S + G + F F F ++A +AI ++G++
Sbjct: 231 ---------FFSKFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVV 279
Query: 224 FHQKPLYVAIAQTKRERTSYLRIMYAK 250
+ LYV AQ + ER LR Y +
Sbjct: 280 PPGEKLYVQRAQPRSERLIALRQKYMQ 306
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 40/187 (21%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+L + L ++F FG I + +V +++Q +S GYG+V +++ +SA A+E L
Sbjct: 35 DLDPVVTEPHLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFNSHDSAAKAMEALNF 92
Query: 117 ATV--EGMELYA----PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
V + M + P+LR Y N N++VKN+ ++V
Sbjct: 93 KRVGDKCMRIMWQQRDPTLR-------------YSGN-----------GNIFVKNLKNEV 128
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH----- 225
D EL F + G I S K+M G S+G+GFV F N + A AI +NG H
Sbjct: 129 DSRELSVIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGEKDHADEEK 188
Query: 226 QKPLYVA 232
+ LYVA
Sbjct: 189 KMGLYVA 195
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 86/139 (61%), Gaps = 6/139 (4%)
Query: 121 GMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIELK 176
G E+ S+ GR Q+ +K + + +E + + NLY+KN++D +D+ +L+
Sbjct: 8 GKEMSGKSIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 66
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 67 KEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 125
Query: 237 KRERTSYLRIMYAKQGPGL 255
K ER ++L Y ++ G+
Sbjct: 126 KEERKAHLTNQYMQRVAGM 144
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL TID+ KL + FS FG I S+KV++ +DG+SKG+GFV +S+ E A A+ ++
Sbjct: 52 YIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG 110
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 111 RIVGSKPLYV-ALAQRKEERKAHLTNQYMQRV 141
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 93/195 (47%), Gaps = 23/195 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID L+ FS FG I S KV V G SK YGFV Y +ESA AIEK+
Sbjct: 118 FVKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNG 177
Query: 117 ATVEGMEL-YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + AP LR + F NLYV+N D EE L
Sbjct: 178 MLIGGKRVEVAPFLRKQDRESEEVFTNLYVRNFPADWDEEA------------------L 219
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ--KPLYVAI 233
+Q+ + G I+S+ + ++G + F FV + P+ A +NTLN + + +PL V
Sbjct: 220 RQFLEKYGEITSMMLKEDSKG--RRFAFVNYKEPEVAKEVVNTLNDLKLEESSEPLLVCP 277
Query: 234 AQTKRERTSYLRIMY 248
Q K +R + LR +
Sbjct: 278 HQDKAKRQNLLRAQF 292
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 91/186 (48%), Gaps = 12/186 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + D L Q K+G+I S +++ +D K + + FV Y E A + L
Sbjct: 206 YVRNFPADWDEEALRQFLEKYGEITS--MMLKEDSKGRRFAFVNYKEPEVAKEVVNTLND 263
Query: 117 ATVEGME---LYAPSLRAGRIQE--SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
+E L P + Q A FNN + D VT NLY+KN++D D
Sbjct: 264 LKLEESSEPLLVCPHQDKAKRQNLLRAQFNNSTMAQEDKRVT-----SNLYIKNLDDSFD 318
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L + F G I+S K+M S+GFGFVCF+NP EA +AI ++ L KPLYV
Sbjct: 319 DESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYV 378
Query: 232 AIAQTK 237
+A+ +
Sbjct: 379 GLAEKR 384
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 19/184 (10%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L+++F+ G + S +V S KS GY +V Y + + A A+E L
Sbjct: 33 DLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAQEALENLNYIE 92
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
++G RI S N D + N++VKN++ +D L
Sbjct: 93 IKG--------HPTRIMWS---------NRDPSLRRSGAG-NIFVKNLDKSIDTKSLYDT 134
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
FS G I S K+ G SK +GFV + N + A AI +NG+L K + VA K+
Sbjct: 135 FSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQ 194
Query: 239 ERTS 242
+R S
Sbjct: 195 DRES 198
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 117/254 (46%), Gaps = 15/254 (5%)
Query: 25 GDLDSTDLLRLCSALIASIDVHSAMATPTFIPFT----VNLASTIDNWKLHQIFSKFGDI 80
GD D D + +A+ +A FT + T+D + + FS+FG I
Sbjct: 172 GDKDHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTVDKEVIEKFFSRFGGI 231
Query: 81 QSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQ-ESAS 139
SS ++G+ + F + E A+ AIE + V+G+ L R Q S
Sbjct: 232 TSSATCKDKNGRV--FAFCNFEKHEDAVKAIEASHEQFVDGVVPPGEKLYVQRAQPRSER 289
Query: 140 FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK 199
L K + + L NLYV+N + + E L + F + G+I S ++M G S+
Sbjct: 290 LIALRQKYMQC----QTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANGNSR 345
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLA--- 256
GFGFV F N D+AN A+ +NG + + KPL V IAQ + +R LR+ + ++ +
Sbjct: 346 GFGFVSFGNADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQRLQAMMRRM 405
Query: 257 -STNFPVHPTLYQR 269
S F H L QR
Sbjct: 406 HSMPFVSHGHLPQR 419
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 102/207 (49%), Gaps = 33/207 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-- 114
F NL + +D+ +L IF KFGDI S KV+ ++GKS+GYGFV + +A AIE +
Sbjct: 113 FVKNLKNEVDSRELGAIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNG 172
Query: 115 ---YAATVEGMELYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A + M LY + R R+ A+F N+Y+K + V +E+++K
Sbjct: 173 DKDHADEEKKMGLYVANFIRRNARLATLVANFTNVYIKQVLPTVDKEVIEK--------- 223
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT-----LNGIL 223
+FS+ G I+S + G + F F F ++A +AI ++G++
Sbjct: 224 ---------FFSRFGGITSSATCKDKNG--RVFAFCNFEKHEDAVKAIEASHEQFVDGVV 272
Query: 224 FHQKPLYVAIAQTKRERTSYLRIMYAK 250
+ LYV AQ + ER LR Y +
Sbjct: 273 PPGEKLYVQRAQPRSERLIALRQKYMQ 299
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 40/187 (21%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+L + L ++F FG I + +V +++Q +S GYG++ ++ +SA A+E L
Sbjct: 28 DLDPIVTEPHLVELFKPFGTILNVRVCRDIITQ--RSLGYGYINFNNHDSAAKAMEALNF 85
Query: 117 ATV--EGMELYA----PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
V + M + P+LR Y N N++VKN+ ++V
Sbjct: 86 KRVGDKCMRIMWQQRDPALR-------------YSGN-----------GNVFVKNLKNEV 121
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH----- 225
D EL F + G I S K+M G S+G+GFV F N + A AI +NG H
Sbjct: 122 DSRELGAIFKKFGDILSCKVMEDEEGKSRGYGFVHFKNDNAAKEAIENMNGDKDHADEEK 181
Query: 226 QKPLYVA 232
+ LYVA
Sbjct: 182 KMGLYVA 188
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ V E L + F G I +V++ R T R + G+G++ F+N D A +A+
Sbjct: 23 SLYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSL--GYGYINFNNHDSAAKAM 80
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
LN KR +RIM+ ++ P L
Sbjct: 81 EALN---------------FKRVGDKCMRIMWQQRDPAL 104
>gi|405946351|gb|EKC17616.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 199
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN+ D++D++ L++ F+Q G I+S K+M T G SKGFGFVCF +P+EA +AI +
Sbjct: 61 NLYVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEM 120
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVH 263
N L +PLYVA+AQ K++R + L Y ++ +S + P H
Sbjct: 121 NEKLIEARPLYVALAQKKQDRKAQLASQYMQR---TSSRDMPEH 161
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA ID+ +L + F++FG I S+KV+ ++DG+SKG+GFV + + E A AI ++
Sbjct: 63 YVKNLADNIDDVRLRKEFAQFGTITSAKVMTTEDGRSKGFGFVCFRSPEEAAKAIVEMNE 122
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD-DVTEEILDK--NLYVKNINDDVDEI 173
+E LY +L + A + Y++ D+ E + NL++KN++ +D+
Sbjct: 123 KLIEARPLYV-ALAQKKQDRKAQLASQYMQRTSSRDMPEHRIGPGVNLFIKNLDKSIDDE 181
Query: 174 ELKQYFSQCGIISSVKIM 191
+L++ FSQ G I+S K++
Sbjct: 182 KLREEFSQFGTITSAKVV 199
>gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica]
Length = 130
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 80/120 (66%), Gaps = 6/120 (5%)
Query: 150 DDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNP 209
++V ++ NLY+KN++D +D+ +LKQ FSQ G I+S K+MR GIS+G GFV F+ P
Sbjct: 5 NEVADKFQGANLYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTP 64
Query: 210 DEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAK-----QGPGLASTNFPVHP 264
+EA+RAI +NG + KPL+VA+AQ K +R + L+ +++ P +AS P++P
Sbjct: 65 EEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQIRPVAMAPSVAS-RMPMYP 123
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +ID+ KL Q+FS+FG I S KV+ +G S+G GFV ++T E A AI ++
Sbjct: 17 YMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILEMNG 76
Query: 117 ATVEGMELY 125
V L+
Sbjct: 77 KMVVSKPLF 85
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 98/188 (52%), Gaps = 22/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +IDN ++ FS FG+I + V +DG S+GYGFV + ++E+A AIEK+
Sbjct: 109 YIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 168
Query: 117 ATVEGMELYAPSL--RAGRIQESAS-FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+++ R R QE A+ F NLYVKNL ++ TE+
Sbjct: 169 MLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQ------------------ 210
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVA 232
L++ F G I+S K+M G S+ FGFV F +P A A+ L+G L K LYVA
Sbjct: 211 HLREMFEPYGRITSHKLMLDEEGRSRRFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVA 270
Query: 233 IAQTKRER 240
A +K ER
Sbjct: 271 RALSKAER 278
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+Y+KN+ +D + FS G I + + + G S+G+GFV F + + A AI +N
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 221 GILFHQKPLYVAIAQTKR----ERTSYLRIMYAK 250
G+L + + ++V +R E+ ++ + +Y K
Sbjct: 168 GMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVK 201
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 93/195 (47%), Gaps = 23/195 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID L+ FS FG I S KV V G SK YGFV Y +ESA AIEK+
Sbjct: 118 FVKNLDKSIDTKSLYDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNG 177
Query: 117 ATVEGMEL-YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + AP LR + F NLYV+N D EE L
Sbjct: 178 MLIGGKRVEVAPFLRKQDREGEEVFTNLYVRNFPADWNEEA------------------L 219
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ--KPLYVAI 233
+Q+ + G I+S+ + ++G + F FV + P+ A +NTLN + + +PL V
Sbjct: 220 RQFLEKYGEITSMMLKEDSKG--RRFAFVNYKEPEVAKEVVNTLNDLKLDESSEPLLVCP 277
Query: 234 AQTKRERTSYLRIMY 248
Q K +R + LR +
Sbjct: 278 HQDKAKRQNLLRAQF 292
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 91/186 (48%), Gaps = 12/186 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESA---LNAIEK 113
+ N + + L Q K+G+I S +++ +D K + + FV Y E A +N +
Sbjct: 206 YVRNFPADWNEEALRQFLEKYGEITS--MMLKEDSKGRRFAFVNYKEPEVAKEVVNTLND 263
Query: 114 LYAATVEGMELYAPSLRAGRIQE--SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
L L P + Q A FNN + D VT NLY+KN++D D
Sbjct: 264 LKLDESSEPLLVCPHQDKAKRQNLLRAQFNNSSMGQEDKRVTS-----NLYIKNLDDSFD 318
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ L + F G I+S K+M S+GFGFVCF+NP EA +AI ++ L KPLYV
Sbjct: 319 DESLGELFKPFGTITSSKVMLDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYV 378
Query: 232 AIAQTK 237
+A+ +
Sbjct: 379 GLAEKR 384
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L+++F+ G + S +V S KS GY +V Y + + A A+E L
Sbjct: 30 YVGDLKPDVTEAVLYEVFNTVGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALESLN 89
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G RI S N D + N++VKN++ +D L
Sbjct: 90 YIEIKG--------HPTRIMWS---------NRDPSLRRSGAG-NIFVKNLDKSIDTKSL 131
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA--I 233
FS G I S K+ G SK +GFV + N + A AI +NG+L K + VA +
Sbjct: 132 YDTFSHFGPILSCKVAVDASGASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFL 191
Query: 234 AQTKRERTSYLRIMYAKQGPG 254
+ RE +Y + P
Sbjct: 192 RKQDREGEEVFTNLYVRNFPA 212
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 97/187 (51%), Gaps = 20/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +IDN ++ FS FG+I + V +DG S+GYGFV + ++E+A AIEK+
Sbjct: 105 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 164
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+++ R R QE A+ KNLYVKN++++ E
Sbjct: 165 MLCNNQKVHVVKFIPRRDREQEKATH-----------------FKNLYVKNLSEEFTEQH 207
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
L++ F G I+S K+M G S+ FGFV F NP A A+ L+G L K LYVA
Sbjct: 208 LREMFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVAR 267
Query: 234 AQTKRER 240
A +K ER
Sbjct: 268 ALSKAER 274
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+Y+KN+ +D + FS G I + + + G S+G+GFV F + + A AI +N
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 163
Query: 221 GILFHQKPLYVAIAQTKR----ERTSYLRIMYAK 250
G+L + + ++V +R E+ ++ + +Y K
Sbjct: 164 GMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVK 197
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 98/188 (52%), Gaps = 22/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +IDN ++ FS FG+I + V +DG S+GYGFV + ++E+A AIEK+
Sbjct: 106 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 165
Query: 117 ATVEGMELYAPSL--RAGRIQESAS-FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+++ R R QE A+ F NLYVKNL ++ TE+
Sbjct: 166 MLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTEQ------------------ 207
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVA 232
L++ F G I+S K+M G S+ FGFV F +P A A+ L+G L K LYVA
Sbjct: 208 HLREMFEPYGRITSHKLMLDEEGRSRKFGFVAFESPQSALAAVIGLHGKQLGDNKFLYVA 267
Query: 233 IAQTKRER 240
A +K ER
Sbjct: 268 RALSKAER 275
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+Y+KN+ +D + FS G I + + + G S+G+GFV F + + A AI +N
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 221 GILFHQKPLYVAIAQTKR----ERTSYLRIMYAK 250
G+L + + ++V +R E+ ++ + +Y K
Sbjct: 165 GMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVK 198
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 100/189 (52%), Gaps = 7/189 (3%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
T++ + + F+KFG I S+ + G+ + F + + A+ A+E ++ ++G+
Sbjct: 217 TVNKDVIEKFFAKFGGITSAAACKDKSGRV--FAFCNFEKHDDAVKAVEAMHDHHIDGIT 274
Query: 124 LYAPSLRAGRIQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
L R Q S L K + + L NLYV+N + + +L + F +
Sbjct: 275 APGEKLYVQRAQPRSERLIALRQKYMQ----HQALGNNLYVRNFDPEFTGADLLELFKEY 330
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G + S ++M + G+S+GFGFV FSN DEAN A+ +NG + + KPL V IAQ + +R +
Sbjct: 331 GEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYT 390
Query: 243 YLRIMYAKQ 251
LR+ + ++
Sbjct: 391 MLRLQFQQR 399
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 35/219 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ LH IF+KFG I S KV+ ++GKS+GYGFV + + SA +AI K+
Sbjct: 116 FVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNG 175
Query: 117 ATVEGME----LYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
A E LY + R R+ A+F N+Y+K + + +N D
Sbjct: 176 AADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQV--------------LPTVNKD 221
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL-----NGILF 224
V ++++F++ G I+S + G + F F F D+A +A+ + +GI
Sbjct: 222 V----IEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITA 275
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAKQ---GPGLASTNF 260
+ LYV AQ + ER LR Y + G L NF
Sbjct: 276 PGEKLYVQRAQPRSERLIALRQKYMQHQALGNNLYVRNF 314
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 39/186 (20%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+L +TI+ +L ++F FG I + +V +++Q +S GYG+V + +SA AIE +
Sbjct: 31 DLDATINEPQLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFDNHDSAEKAIESMNF 88
Query: 117 ATVEG------MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
V + P+LR Y N N++VKN+ DV
Sbjct: 89 KRVGDKCVRLMWQQRDPALR-------------YSGN-----------GNVFVKNLEKDV 124
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH----Q 226
D L F++ G I S K+M+ G S+G+GFV F + A AI +NG H +
Sbjct: 125 DSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDK 184
Query: 227 KPLYVA 232
K LYVA
Sbjct: 185 KALYVA 190
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
++YV +++ ++E +L + F G I +V++ R T R + G+G+V F N D A +AI
Sbjct: 26 SIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSL--GYGYVNFDNHDSAEKAI 83
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
++N KR +R+M+ ++ P L
Sbjct: 84 ESMN---------------FKRVGDKCVRLMWQQRDPAL 107
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 98/187 (52%), Gaps = 20/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +IDN +++ FS FG+I + V ++G S+GYGFV + ++E+A AIEK+
Sbjct: 113 YIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVNG 172
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+++ R R QE A+ KNLYVKN++++ E
Sbjct: 173 MLCNNQKVHVVKFIPRRDREQEKATH-----------------FKNLYVKNLSEEFTEQH 215
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
L++ F G I+S K+M G S+ FGFV F NP A A+ L+G L K LYVA
Sbjct: 216 LREMFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSALAAVIGLHGKQLGDNKFLYVAR 275
Query: 234 AQTKRER 240
A +K ER
Sbjct: 276 ALSKNER 282
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+Y+KN+ +D + + FS G I + + + G S+G+GFV F + + A AI +N
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 221 GILFHQKPLYVAIAQTKR----ERTSYLRIMYAK 250
G+L + + ++V +R E+ ++ + +Y K
Sbjct: 172 GMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVK 205
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 98/187 (52%), Gaps = 20/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +IDN +++ FS FG+I + V ++G S+GYGFV + ++E+A AIEK+
Sbjct: 110 YIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVNG 169
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+++ R R QE A+ KNLYVKN++++ E
Sbjct: 170 MLCNNQKVHVVKFIPRRDREQEKATH-----------------FKNLYVKNLSEEFTEQH 212
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
L++ F G I+S K+M G S+ FGFV F NP A A+ L+G L K LYVA
Sbjct: 213 LREMFEPYGRITSHKLMLDEEGRSRRFGFVAFENPQSAVAAVIGLHGKQLGDNKFLYVAR 272
Query: 234 AQTKRER 240
A +K ER
Sbjct: 273 ALSKAER 279
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+Y+KN+ +D + + FS G I + + + G S+G+GFV F + + A AI +N
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 221 GILFHQKPLYVAIAQTKR----ERTSYLRIMYAK 250
G+L + + ++V +R E+ ++ + +Y K
Sbjct: 169 GMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVK 202
>gi|340056243|emb|CCC50573.1| putative polyadenylate-binding protein 1 [Trypanosoma vivax Y486]
Length = 482
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 99/196 (50%), Gaps = 7/196 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ L T++ + + FSKFG I S+ ++G++ + F + + A+ AIE +
Sbjct: 112 YIKQLLPTVNKDTIEKFFSKFGGITSAATCKDKNGRA--FAFCNFEKHDDAVKAIEAFHD 169
Query: 117 ATVEGMELYAPSLRAGRIQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+EG+ L R Q S L K + + L NLYV+N + + E +L
Sbjct: 170 QVIEGVTPPGEKLYVQRAQPRSERLIALRQKYMQC----QSLGNNLYVRNFDVEFSEKDL 225
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F + G I S ++M G S+GFGFV F N D+AN A+ +NG + + KPL V IAQ
Sbjct: 226 HVLFEEYGTIRSCRVMTDANGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQ 285
Query: 236 TKRERTSYLRIMYAKQ 251
+ +R LR+ + ++
Sbjct: 286 RRDQRFMMLRVQFQQR 301
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 104/215 (48%), Gaps = 21/215 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ +L IF +FG+I S KV+ + G+S+GYGFV + +A NAIE
Sbjct: 18 FVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFVHFKDDTAAKNAIE---- 73
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++ G + +A + +A + N + L + T N+Y+K + V++ ++
Sbjct: 74 -SMNGDKEHADAAKAALYVANFIRRNARLAALVANFT------NVYIKQLLPTVNKDTIE 126
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI-----NTLNGILFHQKPLYV 231
++FS+ G I+S + G + F F F D+A +AI + G+ + LYV
Sbjct: 127 KFFSKFGGITSAATCKDKNG--RAFAFCNFEKHDDAVKAIEAFHDQVIEGVTPPGEKLYV 184
Query: 232 AIAQTKRERTSYLRIMYAKQ---GPGLASTNFPVH 263
AQ + ER LR Y + G L NF V
Sbjct: 185 QRAQPRSERLIALRQKYMQCQSLGNNLYVRNFDVE 219
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN+ +VD EL F + G I S K+M G S+G+GFV F + A AI ++
Sbjct: 16 NIFVKNLKGEVDSRELSVIFKRFGEILSCKVMSDEGGRSRGYGFVHFKDDTAAKNAIESM 75
Query: 220 NGILFH----QKPLYVA 232
NG H + LYVA
Sbjct: 76 NGDKEHADAAKAALYVA 92
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 124/258 (48%), Gaps = 54/258 (20%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME------ 123
+ + F +FG I S V + D K + + FV Y +SA A+E + + E
Sbjct: 232 VQKAFEEFGKITS--VAIQTDRKGRRFAFVNYEDFDSAAKAVEAMNGKDMRTQEEIDAGK 289
Query: 124 -----------------LYAPSLRAGRIQESASFNNLY-VKNLDDDVTEEILDK--NLYV 163
LY + + + SA N + KN TE++ ++ NLYV
Sbjct: 290 GEEESTEEGSDEMPEYKLYVTRAQT-KTERSAELRNKFQAKN-----TEKVGNQSCNLYV 343
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
KN+ +DVD+ +L+Q F Q G I+S K+M N G+S+GFGFVCF+N + +AI ++
Sbjct: 344 KNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAMHLK 403
Query: 223 LFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHG 282
L+ KPL+VA+A+ + R L+ Y G+ F Q YQ G+R
Sbjct: 404 LYGGKPLFVAVAEKRDARIERLQQRYRA---GIPMGGF----------QQNYQ--GYRG- 447
Query: 283 GMIPNGFSSPPPSPLFLT 300
P F++P PSP++ +
Sbjct: 448 ---PRNFNAPNPSPMYYS 462
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 98/218 (44%), Gaps = 48/218 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L+ FS FG+I S KV DGKS+GYGFV + ESA AI KL
Sbjct: 125 FVKNLDKTIDNKALYDTFSLFGNILSCKVATDDDGKSRGYGFVHFENDESAHKAITKLNG 184
Query: 117 ATVEGMELYAPSLR--AGRIQ----ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +Y + A R + E F N+Y+K+L + T E +DV
Sbjct: 185 MMIGEKAVYVGPFQKHAERAEQHGDEPRKFTNVYIKHLPESWTTE------------EDV 232
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG--------- 221
++ F + G I+SV I +G + F FV + + D A +A+ +NG
Sbjct: 233 -----QKAFEEFGKITSVAIQTDRKG--RRFAFVNYEDFDSAAKAVEAMNGKDMRTQEEI 285
Query: 222 --------------ILFHQKPLYVAIAQTKRERTSYLR 245
+ LYV AQTK ER++ LR
Sbjct: 286 DAGKGEEESTEEGSDEMPEYKLYVTRAQTKTERSAELR 323
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L+++F+ G + S +V S +S GY +V + A A++ L
Sbjct: 37 YVGDLKPDVTEAMLYEVFNGVGPVASIRVCRDSVTRRSLGYAYVNFHNVADAERALDTLN 96
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ + G + RI S D + + N++VKN++ +D L
Sbjct: 97 YSPIRGKQC--------RIMWSHR----------DPTLRKAGNANVFVKNLDKTIDNKAL 138
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ + G S+G+GFV F N + A++AI LNG++ +K +YV Q
Sbjct: 139 YDTFSLFGNILSCKVATDDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGPFQ 198
Query: 236 TKRERTS 242
ER
Sbjct: 199 KHAERAE 205
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ NL +D+ KL Q+F +FG+I S KV+V ++ G S+G+GFV ++ Q AI+ ++
Sbjct: 342 YVKNLPEDVDDEKLRQMFEQFGEITSPKVMVDENTGVSRGFGFVCFANQADGEKAIQAMH 401
Query: 116 AATVEGMELY 125
G L+
Sbjct: 402 LKLYGGKPLF 411
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 38/119 (31%)
Query: 140 FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRG 196
F +LYV +L DVTE + L + F+ G ++S+++ R T R
Sbjct: 33 FASLYVGDLKPDVTEAM------------------LYEVFNGVGPVASIRVCRDSVTRRS 74
Query: 197 ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+ G+ +V F N +A RA++TLN Y I R RIM++ + P L
Sbjct: 75 L--GYAYVNFHNVADAERALDTLN---------YSPI------RGKQCRIMWSHRDPTL 116
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 20/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +IDN ++ FS FG+I + V +DG S+GYGFV + ++E+A AIEK+
Sbjct: 116 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 175
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+++ R R QE A+ KNLYVKN++++ E
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKATH-----------------FKNLYVKNLSEEFTEQH 218
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
L++ F G I+S K+M G S+ FGFV + NP A A+ L+G L K LYVA
Sbjct: 219 LREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVAR 278
Query: 234 AQTKRER 240
A +K ER
Sbjct: 279 ALSKAER 285
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+Y+KN+ +D + FS G I + + + G S+G+GFV F + + A AI +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 221 GILFHQKPLYVAIAQTKR----ERTSYLRIMYAK 250
G+L + + ++V +R E+ ++ + +Y K
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVK 208
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 20/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +IDN ++ FS FG+I + V +DG S+GYGFV + ++E+A AIEK+
Sbjct: 116 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 175
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+++ R R QE A+ KNLYVKN++++ E
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKATH-----------------FKNLYVKNLSEEFTEQH 218
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
L++ F G I+S K+M G S+ FGFV + NP A A+ L+G L K LYVA
Sbjct: 219 LREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVAR 278
Query: 234 AQTKRER 240
A +K ER
Sbjct: 279 ALSKAER 285
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+Y+KN+ +D + FS G I + + + G S+G+GFV F + + A AI +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 221 GILFHQKPLYVAIAQTKR----ERTSYLRIMYAK 250
G+L + + ++V +R E+ ++ + +Y K
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVK 208
>gi|294884831|gb|ADF47427.1| poly(A) binding protein cytoplasmic-2, partial [Dugesia japonica]
Length = 309
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN++D +D+ LKQ F G I+S K+M + SKGFGFVCFSNP+EA +A+ +
Sbjct: 1 NLYVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEM 60
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
NG + KPLYVA+AQ K +R ++L Y ++
Sbjct: 61 NGKICGSKPLYVALAQRKEDRKAHLASQYMQR 92
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +ID+ +L Q F FG+I S+KV+ + +SKG+GFV +S E A A+ ++
Sbjct: 3 YVKNLDDSIDDSRLKQEFVVFGNITSAKVMTDSNNRSKGFGFVCFSNPEEATKAVTEMNG 62
Query: 117 ATVEGMELY 125
LY
Sbjct: 63 KICGSKPLY 71
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 20/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +IDN ++ FS FG+I + V +DG S+GYGFV + ++E+A AIEK+
Sbjct: 116 YIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVNG 175
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+++ R R QE A+ KNLYVKN++++ E
Sbjct: 176 MLCNNQKVHVVKFIPRRDREQEKATH-----------------FKNLYVKNLSEEFTEQH 218
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
L++ F G I+S K+M G S+ FGFV + NP A A+ L+G L K LYVA
Sbjct: 219 LREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVAR 278
Query: 234 AQTKRER 240
A +K ER
Sbjct: 279 ALSKAER 285
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+Y+KN+ +D + FS G I + + + G S+G+GFV F + + A AI +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 221 GILFHQKPLYVAIAQTKR----ERTSYLRIMYAK 250
G+L + + ++V +R E+ ++ + +Y K
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVK 208
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEIEL 175
+ G EL + GR Q+ + + + I NLYVKN++D +D+ L
Sbjct: 1 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 60
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 61 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 119
Query: 236 TKRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 120 RKEERQAHLTNQYMQRMASVRAVPNPV 146
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 47 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 105
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 106 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 136
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLY+KN++D +D+ +L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +
Sbjct: 6 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 64
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
NG + KPLYVA+AQ K ER ++L Y ++ G+
Sbjct: 65 NGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGM 100
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL TID+ KL + FS FG I S+KV++ +DG+SKG+GFV +S+ E A A+ ++
Sbjct: 8 YIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG 66
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 67 RIVGSKPLYV-ALAQRKEERKAHLTNQYMQRV 97
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 129/269 (47%), Gaps = 34/269 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + D L + F FG I S K + DG + +G+V + ++A+ A++ L
Sbjct: 191 YVKNFPADWDEETLRKAFETFGAITSCKAAAAADGSA--FGWVNFEAHDAAVAAMDALNG 248
Query: 117 -ATVEGMELYAPS-----LRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNIN 167
A + G AP+ L GR Q+ D E I NL+VKN++
Sbjct: 249 IAELPGQAGGAPTTLKAPLFVGRAQKKIERERELKAKFDAAKIERIKKYQGVNLFVKNLD 308
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
D +D+ +L++ F++ G I+S ++MR G S+GFGFVCFS+P+EA +A+ +N L
Sbjct: 309 DGLDDDQLRENFAEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLVLG 368
Query: 227 KPLYVAIAQTKRERTSYLRIMYAKQ-------------GPGLASTNFP--VHPTL----Y 267
KP++VA+AQ K R + L +A++ GP + P +HP Y
Sbjct: 369 KPIFVALAQRKEVRRAQLEAQHAQRRTTAPYGAHPGAMGPAGVPPHAPQGLHPAHLGAPY 428
Query: 268 QRALQVYQAPGFRHG---GMIPNGFSSPP 293
A+ + A G +G GM P G P
Sbjct: 429 GTAMPIMYAAGAPNGHPMGMTPQGHPGVP 457
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 96/204 (47%), Gaps = 32/204 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++ID+ L FS FG+I S KV + G+S+GYG+V Y ++++A +AI K+ +
Sbjct: 103 FVKNLDASIDHKALFDTFSLFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINS 162
Query: 117 ATVEGMELYAPS-LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
T+ E+Y +R + + NLYVKN D EE L
Sbjct: 163 MTICDKEVYVGHFVRRTERSGQSDWTNLYVKNFPADWDEET------------------L 204
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-----------LF 224
++ F G I+S K G + FG+V F D A A++ LNGI
Sbjct: 205 RKAFETFGAITSCKAAAAADGSA--FGWVNFEAHDAAVAAMDALNGIAELPGQAGGAPTT 262
Query: 225 HQKPLYVAIAQTKRERTSYLRIMY 248
+ PL+V AQ K ER L+ +
Sbjct: 263 LKAPLFVGRAQKKIERERELKAKF 286
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 25/202 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ +LA+ L +IF+ G + S + V +D +S GY +V + A A++
Sbjct: 15 YVGDLATDASEGLLFEIFNTVGPVAS--IRVCRDAVTRRSLGYAYVNFHNVSDAERALDT 72
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++ + RI S L + N++VKN++ +D
Sbjct: 73 MNYTLIKS--------KPCRIMWSQRDPTLRKSGVG----------NVFVKNLDASIDHK 114
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA- 232
L FS G I S K+ G S+G+G+V + + D A AIN +N + K +YV
Sbjct: 115 ALFDTFSLFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGH 174
Query: 233 -IAQTKRERTSYLRIMYAKQGP 253
+ +T+R S +Y K P
Sbjct: 175 FVRRTERSGQSDWTNLYVKNFP 196
Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ D E L + F+ G ++S+++ R T R S G+ +V F N +A RA+
Sbjct: 13 SLYVGDLATDASEGLLFEIFNTVGPVASIRVCRDAVTRR--SLGYAYVNFHNVSDAERAL 70
Query: 217 NTLNGILFHQKPLYVAIAQ 235
+T+N L KP + +Q
Sbjct: 71 DTMNYTLIKSKPCRIMWSQ 89
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 109/206 (52%), Gaps = 30/206 (14%)
Query: 66 DNWK---LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA------ 116
+NW L + FS FG+I S +++ D + + F+ Y+ A AIE +
Sbjct: 234 ENWNEEILKENFSPFGEITS--MMMKSDPLGRKFAFINYAENSMAKAAIETMNGKDFSIK 291
Query: 117 ----ATVEGME---------LYAPSLRAGR-IQESASFNNLYVKNLDDDVTEEILDKNLY 162
+T+EG + + A RA R A +++++ +N + NLY
Sbjct: 292 SGDKSTIEGEDTDKSETKLLVCAHQDRARRHAMLKAKYDSMHAEN-----KSKYQGVNLY 346
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
+KN++D +++ EL++ F G+I+S K+M G S GFGFVCF +P++A A++ ++
Sbjct: 347 IKNLDDSINDAELRELFEGFGLITSCKVMVDEHGASLGFGFVCFVSPEDATHAVSEMHLK 406
Query: 223 LFHQKPLYVAIAQTKRERTSYLRIMY 248
L H KPLYV +A+ + +R + L++ Y
Sbjct: 407 LVHNKPLYVGLAEKREQRLNRLQMRY 432
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 13/169 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ +ID L+ FS +G I S KV + G+S+GYGFV + T+ +A AI
Sbjct: 132 FIKNIDESIDTKALYDAFSPYGQILSCKVATDETGRSRGYGFVHFDTEANATRAISDANG 191
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ +++ AP +R R + +S L+D V E+ NLYV+N ++ +E L
Sbjct: 192 MQLGNKKIFVAPFVR--RSERVSS------TKLEDGVDEKFT--NLYVRNFPENWNEEIL 241
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF 224
K+ FS G I+S +M + + + F F+ ++ A AI T+NG F
Sbjct: 242 KENFSPFGEITS--MMMKSDPLGRKFAFINYAENSMAKAAIETMNGKDF 288
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 19/196 (9%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNA 110
P+ + +L+ + L++IF+ G + S +V S KS GY +V Y A A
Sbjct: 39 PSASLYVGDLSPEVTEAILYEIFNTIGPVASIRVCRDSITRKSLGYAYVNYHNVNDARRA 98
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+E L + G ++ RI S D + N+++KNI++ +
Sbjct: 99 LEALKYNEICGKQV--------RIMWSHR----------DPSLRKSGAGNVFIKNIDESI 140
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D L FS G I S K+ G S+G+GFV F A RAI+ NG+ K ++
Sbjct: 141 DTKALYDAFSPYGQILSCKVATDETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIF 200
Query: 231 VAIAQTKRERTSYLRI 246
VA + ER S ++
Sbjct: 201 VAPFVRRSERVSSTKL 216
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +I++ +L ++F FG I S KV+V + G S G+GFV + + E A +A+ +++
Sbjct: 346 YIKNLDDSINDAELRELFEGFGLITSCKVMVDEHGASLGFGFVCFVSPEDATHAVSEMHL 405
Query: 117 ATVEGMELY 125
V LY
Sbjct: 406 KLVHNKPLY 414
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN++D +D+ L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +
Sbjct: 12 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 70
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMY 248
NG + KPLYVA+AQ K ER ++L Y
Sbjct: 71 NGRIVATKPLYVALAQRKEERQAHLTNQY 99
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 14 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 72
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 73 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 103
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN++D +D+ L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +
Sbjct: 24 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 82
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMY 248
NG + KPLYVA+AQ K ER ++L Y
Sbjct: 83 NGRIVATKPLYVALAQRKEERQAHLTNQY 111
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 26 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 84
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 85 RIVATKPLYV-ALAQRKEERQAHLTNQYMQRM 115
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN +L +FS FG + S KV G SKGYGFVQ+ + S A
Sbjct: 105 FVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNG 164
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ ++ P + G+ +S F N+YVKNL + T+ +L
Sbjct: 165 TLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATD------------------ADL 206
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F + G I+S +M+ G S+ FGFV F + A AI +NG++ +K L+V AQ
Sbjct: 207 KRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 266
Query: 236 TKRERTSYLRIMY 248
K RT L+ +
Sbjct: 267 RKTNRTEDLKAKF 279
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 9/137 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL T + L ++F +FG+I S+ V+ +GKS+ +GFV + E+A+ AIEK+
Sbjct: 193 YVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESAS-FNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
V+ EL+ GR Q + +L K + + ++ + NLYVKN++D VD
Sbjct: 253 VVVDEKELHV-----GRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 307
Query: 173 IELKQYFSQCGIISSVK 189
+L++ FS+ G I+S K
Sbjct: 308 TKLEELFSEFGTITSCK 324
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Query: 60 NLASTIDNWKLHQIFSKFG-DIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLYAA 117
+L S+++ L+ FS+F DI S KV ++ G S GYG+V ++ A A+E L
Sbjct: 19 DLDSSVEEGDLYTKFSEFTHDISSVKVCCDRNTGLSLGYGYVNFNHSSQAKTAMEVLNYC 78
Query: 118 TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIELK 176
++G + RI S + D + + + N++VKN+++ +D +L
Sbjct: 79 KLKGKPM--------RIMFS-----------ERDPSNRMSGRGNVFVKNLDESIDNKQLC 119
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
FS G + S K+ R G+SKG+GFV F + A N NG L + ++V
Sbjct: 120 DMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVC 175
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
T++ + + F+KFG I S+ + G+ + F + + A+ A+E ++ ++G+
Sbjct: 217 TVNKEVIEKFFAKFGGITSAAACKDKSGRV--FAFCNFEKHDDAVKAVEAMHDHHIDGIT 274
Query: 124 LYAPSLRAGRIQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
L R Q S L K + + L NLYV+N + + +L + F +
Sbjct: 275 APGEKLYVQRAQPRSERLIALRQKYMQ----HQSLGNNLYVRNFDPEFTGADLLELFKEY 330
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G + S ++M + G S+GFGFV FSN DEAN A+ +NG + + KPL V IAQ + +R +
Sbjct: 331 GEVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYT 390
Query: 243 YLRIMYAKQ 251
LR+ + ++
Sbjct: 391 MLRLQFQQR 399
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 104/219 (47%), Gaps = 35/219 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ LH IF+KFG I S KV+ ++GKS+GYGFV + + SA +AI K+
Sbjct: 116 FVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNG 175
Query: 117 ATVEGME----LYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
A E LY + R R+ A+F N+Y+K + V +E+++K
Sbjct: 176 AADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTVNKEVIEK---------- 225
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL-----NGILF 224
+F++ G I+S + G + F F F D+A +A+ + +GI
Sbjct: 226 --------FFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITA 275
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAKQ---GPGLASTNF 260
+ LYV AQ + ER LR Y + G L NF
Sbjct: 276 PGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNF 314
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 87/186 (46%), Gaps = 39/186 (20%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+L + I+ +L ++F FG I + +V +++Q +S GYG+V + +SA AIE +
Sbjct: 31 DLDAAINEPQLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFDNHDSAEKAIESMNF 88
Query: 117 ATVEG------MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
V + P+LR Y N N++VKN+ DV
Sbjct: 89 KRVGDKCVRLMWQQRDPALR-------------YSGN-----------GNVFVKNLEKDV 124
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH----Q 226
D L F++ G I S K+M+ G S+G+GFV F + A AI +NG H +
Sbjct: 125 DSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDK 184
Query: 227 KPLYVA 232
K LYVA
Sbjct: 185 KALYVA 190
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
++YV +++ ++E +L + F G I +V++ R T R + G+G+V F N D A +AI
Sbjct: 26 SIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSL--GYGYVNFDNHDSAEKAI 83
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
++N KR +R+M+ ++ P L
Sbjct: 84 ESMN---------------FKRVGDKCVRLMWQQRDPAL 107
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 100/189 (52%), Gaps = 7/189 (3%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
T++ + + F+KFG I S+ +D + + F + + A+ A+E ++ ++G+
Sbjct: 217 TVNKDVIEKFFAKFGGITSA--AACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGIT 274
Query: 124 LYAPSLRAGRIQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
L R Q S L K + + L NLYV+N + + +L + F +
Sbjct: 275 APGEKLYVQRAQPRSERLIALRQKYMQ----HQALGNNLYVRNFDPEFTGADLLELFKEY 330
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G + S ++M + G+S+GFGFV FSN DEAN A+ +NG + + KPL V IAQ + +R +
Sbjct: 331 GEVKSCRVMVSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYT 390
Query: 243 YLRIMYAKQ 251
+R+ + ++
Sbjct: 391 IVRLQFQQR 399
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 35/219 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ LH IF+KFG I S KV+ ++GKS+GYGFV + + SA +AI K+
Sbjct: 116 FVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNG 175
Query: 117 ATVEGME----LYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
A E LY + R R+ A+F N+Y+K + + +N D
Sbjct: 176 AADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQV--------------LPTVNKD 221
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL-----NGILF 224
V ++++F++ G I+S + G + F F F D+A +A+ + +GI
Sbjct: 222 V----IEKFFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITA 275
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAKQ---GPGLASTNF 260
+ LYV AQ + ER LR Y + G L NF
Sbjct: 276 PGEKLYVQRAQPRSERLIALRQKYMQHQALGNNLYVRNF 314
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 39/186 (20%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+L +TI+ +L ++F FG I + +V +++Q +S GYG+V + +SA AIE +
Sbjct: 31 DLDATINEPQLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFDNHDSAEKAIESMNF 88
Query: 117 ATVEG------MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
V + P+LR Y N N++VKN+ DV
Sbjct: 89 KRVGDKCVRLMWQQRDPALR-------------YSGN-----------GNVFVKNLEKDV 124
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH----Q 226
D L F++ G I S K+M+ G S+G+GFV F + A AI +NG H +
Sbjct: 125 DSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDK 184
Query: 227 KPLYVA 232
K LYVA
Sbjct: 185 KALYVA 190
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
++YV +++ ++E +L + F G I +V++ R T R + G+G+V F N D A +AI
Sbjct: 26 SIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSL--GYGYVNFDNHDSAEKAI 83
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
++N KR +R+M+ ++ P L
Sbjct: 84 ESMN---------------FKRVGDKCVRLMWQQRDPAL 107
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN +L +FS FG + S KV G SKGYGFVQ+ + S A
Sbjct: 34 FVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHNG 93
Query: 117 ATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ ++ P + G+ +S F N+YVKNL + T+ +L
Sbjct: 94 TLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATD------------------ADL 135
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ F + G I+S +M+ G S+ FGFV F + A AI +NG++ +K L+V AQ
Sbjct: 136 KRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
Query: 236 TKRERTSYLRIMY 248
K RT L+ +
Sbjct: 196 RKTNRTEDLKAKF 208
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 9/137 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL T + L ++F +FG+I S+ V+ +GKS+ +GFV + E+A+ AIEK+
Sbjct: 122 YVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNG 181
Query: 117 ATVEGMELYAPSLRAGRIQESAS-FNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDE 172
V+ EL+ GR Q + +L K + + ++ + NLYVKN++D VD
Sbjct: 182 VVVDEKELHV-----GRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 173 IELKQYFSQCGIISSVK 189
+L++ FS+ G I+S K
Sbjct: 237 TKLEELFSEFGTITSCK 253
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VKN+++ +D +L FS G + S K+ R G+SKG+GFV F + A N
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 220 NGILFHQKPLYVA 232
NG L + ++V
Sbjct: 92 NGTLIRNQHIHVC 104
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 85/139 (61%), Gaps = 6/139 (4%)
Query: 121 GMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIELK 176
G E+ + GR Q+ +K + + +E + + NLY+KN++D +D+ +L+
Sbjct: 3 GKEISGKIIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 61
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 62 KEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 120
Query: 237 KRERTSYLRIMYAKQGPGL 255
K ER ++L Y ++ G+
Sbjct: 121 KEERKAHLTNQYMQRVAGM 139
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL TID+ KL + FS FG I S+KV++ +DG+SKG+GFV +S+ E A A+ ++
Sbjct: 47 YIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG 105
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 106 RIVGSKPLYV-ALAQRKEERKAHLTNQYMQRV 136
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 85/139 (61%), Gaps = 6/139 (4%)
Query: 121 GMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIELK 176
G E+ + GR Q+ +K + + +E + + NLY+KN++D +D+ +L+
Sbjct: 3 GKEISGKIIFVGRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLR 61
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 62 KEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQR 120
Query: 237 KRERTSYLRIMYAKQGPGL 255
K ER ++L Y ++ G+
Sbjct: 121 KEERKAHLTNQYMQRVAGM 139
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL TID+ KL + FS FG I S+KV++ +DG+SKG+GFV +S+ E A A+ ++
Sbjct: 47 YIKNLDDTIDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNG 105
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 106 RIVGSKPLYV-ALAQRKEERKAHLTNQYMQRV 136
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
T++ + F+KFG I S+ +D + + F + + A+ A+E ++ ++G+
Sbjct: 217 TVNKEVIENFFAKFGGITSA--AACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGIT 274
Query: 124 LYAPSLRAGRIQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
L R Q S L K + + L NLYV+N + + +L + F +
Sbjct: 275 APGEKLYVQRAQPRSERLIALRQKYMQ----HQSLGNNLYVRNFDPEFTGADLLELFKEY 330
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G + S ++M + G S+GFGFV FSN DEAN A+ +NG + + KPL V IAQ + +R +
Sbjct: 331 GDVKSCRVMMSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYT 390
Query: 243 YLRIMYAKQ 251
LR+ + ++
Sbjct: 391 MLRLQFQQR 399
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 103/219 (47%), Gaps = 35/219 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ LH IF+KFG I S KV+ ++GKS+GYGFV + + SA +AI K+
Sbjct: 116 FVKNLEKDVDSKSLHDIFTKFGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNG 175
Query: 117 ATVEGME----LYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
A E LY + R R+ A+F N+Y+K + V +E+++
Sbjct: 176 AADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTVNKEVIEN---------- 225
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL-----NGILF 224
+F++ G I+S + G + F F F D+A +A+ + +GI
Sbjct: 226 --------FFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITA 275
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAKQ---GPGLASTNF 260
+ LYV AQ + ER LR Y + G L NF
Sbjct: 276 PGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNF 314
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 85/186 (45%), Gaps = 39/186 (20%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+L + I+ +L ++F FG I + +V +++Q +S GYG+V + SA AIE +
Sbjct: 31 DLDAAINEPQLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFDNHHSAERAIESMNF 88
Query: 117 ATVEG------MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
V + PSLR Y N N++VKN+ DV
Sbjct: 89 RRVGDKCVRLMWQQRDPSLR-------------YSGN-----------GNVFVKNLEKDV 124
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH----Q 226
D L F++ G I S K+M G S+G+GFV F + A AI +NG H +
Sbjct: 125 DSKSLHDIFTKFGSILSCKVMEDEEGKSRGYGFVHFKDEISAKDAIVKMNGAADHASEDK 184
Query: 227 KPLYVA 232
K LYVA
Sbjct: 185 KALYVA 190
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
++YV +++ ++E +L + F G I +V++ R T R + G+G+V F N A RAI
Sbjct: 26 SIYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSL--GYGYVNFDNHHSAERAI 83
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
++N +R +R+M+ ++ P L
Sbjct: 84 ESMN---------------FRRVGDKCVRLMWQQRDPSL 107
>gi|196013113|ref|XP_002116418.1| hypothetical protein TRIADDRAFT_30761 [Trichoplax adhaerens]
gi|190581009|gb|EDV21088.1| hypothetical protein TRIADDRAFT_30761, partial [Trichoplax
adhaerens]
Length = 102
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 63/89 (70%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN++D +D+ LK+ FS+ G I+S K+M +G SKGFGFVCF+ +EA++AIN +
Sbjct: 8 NLYVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEASKAINEM 67
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+G + KPLYV AQ K ER ++L Y
Sbjct: 68 SGRIIVSKPLYVTFAQRKEERKAFLASQY 96
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FSKFG I S+KV+ + G SKG+GFV ++TQE A AI ++
Sbjct: 10 YVKNLDDAIDDARLKEEFSKFGSITSAKVMCDEKGASKGFGFVCFATQEEASKAINEMSG 69
Query: 117 ATVEGMELYAPSLRAGRIQESASF 140
+ LY A R +E +F
Sbjct: 70 RIIVSKPLYVTF--AQRKEERKAF 91
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 7/189 (3%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
T+ + + F+KFG I S+ +D + + F + + A+ A+E ++ ++G+
Sbjct: 217 TVSKEVIEKFFAKFGGITSA--AACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGIT 274
Query: 124 LYAPSLRAGRIQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
L R Q S L K + + L NLYV+N + + +L + F +
Sbjct: 275 APGEKLYVQRAQPRSERLIALRQKYMQ----HQSLGNNLYVRNFDPEFTGADLLELFKEY 330
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G + S ++M + G S+GFGFV FSN DEAN A+ +NG + + KPL V IAQ + +R +
Sbjct: 331 GDVKSCRVMVSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYT 390
Query: 243 YLRIMYAKQ 251
LR+ + ++
Sbjct: 391 MLRLQFQQR 399
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 35/219 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +D+ LH IF+KFG I S KV+ ++GKS+GYGFV + + SA +AI K+
Sbjct: 116 FVKNLEKDVDSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNG 175
Query: 117 ATVEGME----LYAPSL--RAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
A E LY + R R+ A+F N+Y+K + V++E+++K
Sbjct: 176 AADHASEDKKALYVANFIRRNARLAALVANFTNVYIKQVLPTVSKEVIEK---------- 225
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL-----NGILF 224
+F++ G I+S + G + F F F D+A +A+ + +GI
Sbjct: 226 --------FFAKFGGITSAAACKDKSG--RVFAFCNFEKHDDAVKAVEAMHDHHIDGITA 275
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAKQ---GPGLASTNF 260
+ LYV AQ + ER LR Y + G L NF
Sbjct: 276 PGEKLYVQRAQPRSERLIALRQKYMQHQSLGNNLYVRNF 314
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 39/186 (20%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+L + I+ +L ++F FG I + +V +++Q +S GYG+V + ESA AIE +
Sbjct: 31 DLDAAINEPQLVELFKPFGTILNVRVCRDIITQ--RSLGYGYVNFDNHESAEKAIESMNF 88
Query: 117 ATVEG------MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
V + P+LR Y N N++VKN+ DV
Sbjct: 89 KRVGDKCVRLMWQQRDPALR-------------YSGN-----------GNVFVKNLEKDV 124
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH----Q 226
D L F++ G I S K+M+ G S+G+GFV F + A AI +NG H +
Sbjct: 125 DSKSLHDIFTKFGSILSCKVMQDEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDK 184
Query: 227 KPLYVA 232
K LYVA
Sbjct: 185 KALYVA 190
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 118/240 (49%), Gaps = 29/240 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+A+ I + + + F FG+I+S KV+ S D + YGFV Y A A+ +L
Sbjct: 214 FFKNVAADISDEDIMKEFENFGEIES-KVLKSHDQFGR-YGFVAYKDTADAQKAVSELND 271
Query: 117 ATV--EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ +G +LY RA R E + ++ + D NLY+KN ++DV E E
Sbjct: 272 KPLGADGTKLYV--ARAQRKSERMGRLRREFERRRTEMRAKYKDANLYIKNFSEDVTEDE 329
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYVAI 233
L++ F G I SV++++ G S+ FGFV FS+ +EA RAI +NG + KPLYV+
Sbjct: 330 LRKMFEAYGTIVSVRVVKDRDGQSRQFGFVLFSSEEEATRAIQEMNGRMTADGKPLYVSR 389
Query: 234 AQTKRERTSYL---RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFS 290
+ K ER + R+M A+ +Q Q + GGM P GF+
Sbjct: 390 FRNKEERAQEVQRQRMMTAQN-------------------MQYQQWMTQQGGGMPPMGFN 430
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 34/195 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI----E 112
F NL++ +DN L+ F FG + S +V+ Q+G S+G FVQY E A I +
Sbjct: 121 FIKNLSAEVDNKALYDTFRVFGTVLSCRVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVND 180
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
K V +E Y P R R+ E+ + N++ KN+ D+ +
Sbjct: 181 KKILDKVVKVEAYKP--RRQRMLEAEETQKNFT--------------NVFFKNVAADISD 224
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP---- 228
++ + F G I S K+++++ + +GFV + + +A +A++ LN KP
Sbjct: 225 EDIMKEFENFGEIES-KVLKSHDQFGR-YGFVAYKDTADAQKAVSELN-----DKPLGAD 277
Query: 229 ---LYVAIAQTKRER 240
LYVA AQ K ER
Sbjct: 278 GTKLYVARAQRKSER 292
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 36/194 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFG-DIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIE 112
+ +L+ + +L+ F+ FG +QS +V +V+Q S GYG+V ++T E A
Sbjct: 32 YVGDLSKDVIEAELYNFFNSFGATVQSVRVCRDMVTQ--TSLGYGYVNFATPEDA----- 84
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK------NLYVKNI 166
++ E+A+F L + + +E K N+++KN+
Sbjct: 85 -------------------AKVYEAANFEELKGQPVRIMFSERDPTKRRSGVGNIFIKNL 125
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
+ +VD L F G + S +++ G S+G FV + + + A + I +N
Sbjct: 126 SAEVDNKALYDTFRVFGTVLSCRVLYDQEGNSRGIAFVQYEDAEVAKQVIAQVNDKKILD 185
Query: 227 KPLYVAIAQTKRER 240
K + V + +R+R
Sbjct: 186 KVVKVEAYKPRRQR 199
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 97/201 (48%), Gaps = 23/201 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID L+ F+ FG I S KV V G S+ YGFV Y ++ESA AIEK+
Sbjct: 118 FVKNLDKSIDTKSLYDTFAHFGTILSCKVAVDSTGASRRYGFVHYESEESAREAIEKVNG 177
Query: 117 ATVEGMEL-YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G ++ AP LR D TEE+ NLYV+N D DE L
Sbjct: 178 MLIGGKKVEVAPFLRK-----------------QDRETEEVY-TNLYVRNFPADWDEEAL 219
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ--KPLYVAI 233
+Q+ + G I+S+ + ++G + F FV + A + TLN + + PL V
Sbjct: 220 RQFLEKYGEITSMMLKEDSKG--RRFAFVNYKEASVAKEVVTTLNDLKLEEASDPLLVCP 277
Query: 234 AQTKRERTSYLRIMYAKQGPG 254
Q K +R + L+ ++ PG
Sbjct: 278 HQDKVKRQNMLKAQFSTVSPG 298
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 92/186 (49%), Gaps = 6/186 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + D L Q K+G+I S +++ +D K + + FV Y A + L
Sbjct: 206 YVRNFPADWDEEALRQFLEKYGEITS--MMLKEDSKGRRFAFVNYKEASVAKEVVTTLND 263
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVK--NLDDDVTEEILDKNLYVKNINDDVDEIE 174
+E E P L + N L + + ++ L NLY+KN++D D+
Sbjct: 264 LKLE--EASDPLLVCPHQDKVKRQNMLKAQFSTVSPGQDDKRLTSNLYIKNLDDTFDDAS 321
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + F Q G I+S K+M S+GFGFVCFSNP EA +AI ++ L KPLYV +A
Sbjct: 322 LGELFKQFGTITSSKVMLDANNNSRGFGFVCFSNPQEATKAIAAMHLKLVKGKPLYVGLA 381
Query: 235 QTKRER 240
+ + +R
Sbjct: 382 EKRDQR 387
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 70 LHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L+++F+ G + S +V S KS GY +V Y + + A A+E L ++G
Sbjct: 43 LYEVFNTIGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALENLNYIEIKG------- 95
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
RI S N D + + N++VKN++ +D L F+ G I S
Sbjct: 96 -HPTRIMWS---------NRDPSLRKSGAG-NIFVKNLDKSIDTKSLYDTFAHFGTILSC 144
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
K+ + G S+ +GFV + + + A AI +NG+L K + VA K++R +
Sbjct: 145 KVAVDSTGASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEVAPFLRKQDRET 198
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 78/120 (65%), Gaps = 6/120 (5%)
Query: 150 DDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNP 209
++V ++ NLY+KN++ +D+ +LKQ FSQ G I+S K+MR GIS+G GFV F+ P
Sbjct: 5 NEVADKFQGANLYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTP 64
Query: 210 DEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAK-----QGPGLASTNFPVHP 264
+EA+RAI +NG + KPLYVA+AQ K R + L+ +++ P +AS P++P
Sbjct: 65 EEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQIRPVAMAPSVAS-RMPMYP 123
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +ID+ KL Q+FS+FG I S KV+ +G S+G GFV ++T E A AI ++
Sbjct: 17 YMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILEMNG 76
Query: 117 ATVEGMELY 125
V G LY
Sbjct: 77 KMVVGKPLY 85
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 92/195 (47%), Gaps = 45/195 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L+ FS FG I SSKVV ++ G S+G+GFV + T E+A AI
Sbjct: 102 FIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAIN---- 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T+ GM L +R+ AS
Sbjct: 157 -TMNGMLLNDRKVRSDYPWSLASL------------------------------------ 179
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ISS + T SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 180 ---CPATLISSCFQVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 236
Query: 237 KRERTSYLRIMYAKQ 251
K ER + L Y ++
Sbjct: 237 KEERKAILTNQYRRR 251
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L+++FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ + +D L
Sbjct: 74 FEMIKGQPI--------RIMWSHRDPGLRRSGMG----------NIFIKNLENSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
FS G I S K++ G S+GFGFV F + A +AINT+NG+L + +
Sbjct: 116 YDTFSTFGSILSSKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDR 166
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++ + PGL
Sbjct: 70 DTMNFEMIKGQP---------------IRIMWSHRDPGL 93
>gi|159164023|pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN++D +D+ L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +
Sbjct: 17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 75
Query: 220 NGILFHQKPLYVAIAQTKRERTS 242
NG + KPLYVA+AQ K ER S
Sbjct: 76 NGRIVATKPLYVALAQRKEERQS 98
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 19 YVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 77
Query: 117 ATVEGMELY 125
V LY
Sbjct: 78 RIVATKPLY 86
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 84/172 (48%), Gaps = 32/172 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L FS FG+I S KV + GKSK YGFV Y +ESA AIEK
Sbjct: 107 FVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEK--- 163
Query: 117 ATVEGMELYAPSLRAG-------RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
V GM+L + ++ G R F NLYVKN D VT
Sbjct: 164 --VNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVT---------------- 205
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
E LKQ FS G I+S+ + N+ ++ F F+ +S+ D A A+ LNG
Sbjct: 206 --EAHLKQLFSPYGEITSMIVKSDNK--NRKFCFINYSDADSARNAMENLNG 253
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 59/86 (68%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLY+KN++D +++ LK+ F G I+S K+M+ ++ SKGFGFVCF +EAN+A+ +
Sbjct: 408 NLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEM 467
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
+ + + KPLYV +A+ + R S L+
Sbjct: 468 HLKIINGKPLYVGLAEKREHRLSRLQ 493
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 31/193 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L+ + L++IF+ G + S +V S KS GY +V Y A A++ L
Sbjct: 19 YVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 116 AATVEGME---LYA---PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
++G +++ PSLR + N++VKNLD
Sbjct: 79 YTNIKGQPARLMWSHRDPSLR------KSGTGNIFVKNLD------------------KT 114
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D L FS G I S K+ G SK +GFV + + + A AI +NG+ K +
Sbjct: 115 IDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNV 174
Query: 230 YVAIAQTKRERTS 242
YV K ER +
Sbjct: 175 YVGHFIKKSERAT 187
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 18 TPFSLYVGDLDSTDLLR-LCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSK 76
TP LYVG S + A +++ S P + NL ++++ L ++F
Sbjct: 370 TPNILYVGPHQSRARRHAILKAKFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEP 429
Query: 77 FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
+G I S+KV+ +SKG+GFV + T E A A+ +++ + G LY
Sbjct: 430 YGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLY 478
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTL 219
LYV ++++DV E L + F+ G + S+++ R + S G+ +V + N +A RA++TL
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
N +P R+M++ + P L
Sbjct: 78 NYTNIKGQP---------------ARLMWSHRDPSL 98
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 84/172 (48%), Gaps = 32/172 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L FS FG+I S KV + GKSK YGFV Y +ESA AIEK
Sbjct: 107 FVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEK--- 163
Query: 117 ATVEGMELYAPSLRAG-------RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
V GM+L + ++ G R F NLYVKN D VT
Sbjct: 164 --VNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVT---------------- 205
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
E LKQ FS G I+S+ + N+ ++ F F+ +S+ D A A+ LNG
Sbjct: 206 --EAHLKQLFSPYGEITSMIVKSDNK--NRKFCFINYSDADSARNAMENLNG 253
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 60/86 (69%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLY+KN++D +++ LK+ F G I+S K+M+ ++ SKGFGFVCF +EAN+A+ +
Sbjct: 411 NLYIKNLDDSMNDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEM 470
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
+ + + KPLYV +A+ + +R S L+
Sbjct: 471 HLKIINGKPLYVGLAEKREQRLSRLQ 496
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 21/188 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L+ + L++IF+ G + S +V S KS GY +V Y A A++ L
Sbjct: 19 YVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 116 AATVEGMEL-YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
++G S R +++S + N++VKN++ +D
Sbjct: 79 YTNIKGQPARLMWSHRDPSLRKSGT-------------------GNIFVKNLDKTIDNKA 119
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L FS G I S K+ G SK +GFV + + + A AI +NG+ K +YV
Sbjct: 120 LFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHF 179
Query: 235 QTKRERTS 242
K ER +
Sbjct: 180 IKKSERAT 187
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 18 TPFSLYVGDLDSTDLLR-LCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSK 76
TP LYVG S + A +++ S P + NL ++++ L ++F
Sbjct: 373 TPNILYVGPHQSRARRHAILKAKFDTLNTESRNKHPGVNLYIKNLDDSMNDQTLKELFEP 432
Query: 77 FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
+G I S+KV+ +SKG+GFV + T E A A+ +++ + G LY
Sbjct: 433 YGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLY 481
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTL 219
LYV ++++DV E L + F+ G + S+++ R + S G+ +V + N +A RA++TL
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
N +P R+M++ + P L
Sbjct: 78 NYTNIKGQP---------------ARLMWSHRDPSL 98
>gi|297830144|ref|XP_002882954.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
gi|297328794|gb|EFH59213.1| hypothetical protein ARALYDRAFT_897861 [Arabidopsis lyrata subsp.
lyrata]
Length = 406
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 116/219 (52%), Gaps = 16/219 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG--KSKGYGFVQYSTQESALNAIEKL 114
+ NL + LH++FS++G + S VVV +DG +S+G GFV + E+A A+E L
Sbjct: 69 YVENLIENVTEDILHRLFSQYGIVSS--VVVMRDGMGRSRGLGFVNFCHLENAKKAVEFL 126
Query: 115 YAATVEGMELYAPSLRAGR-IQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDE 172
G +L + +L G+ +++ L D+ + + + N+YVKN+++ +++
Sbjct: 127 C-----GRQLGSKTLFVGKALRKDERMEMLKQHFRDNSIAKPNMGWSNMYVKNLSESMND 181
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F + G I S K+MR G SKGFGFVCFSN +E+ +A LN KPL V
Sbjct: 182 TRLREIFGRYGQIVSAKVMRHENGRSKGFGFVCFSNREESKQAKRYLN---VDGKPLVVR 238
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRAL 271
+ T+R+ + R+ G T P+ P+ Q L
Sbjct: 239 V--TERKEDTLKRLHQYFHGQPRHYTQAPLVPSPTQPVL 275
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 24/145 (16%)
Query: 106 SALNAIEKLYAATVEGMELYAPSL-----RAGRIQESASFNNLYVKNLDDDVTEEILDKN 160
+ ++A L+ + V+G +L+ RA + + F N+YV+NL ++VTE+IL +
Sbjct: 27 AGVSARSALHGSMVDGKKLFVAKFINKDERAA-MSWNQEFTNVYVENLIENVTEDILHR- 84
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
FSQ GI+SSV +MR G S+G GFV F + + A +A+ L
Sbjct: 85 -----------------LFSQYGIVSSVVVMRDGMGRSRGLGFVNFCHLENAKKAVEFLC 127
Query: 221 GILFHQKPLYVAIAQTKRERTSYLR 245
G K L+V A K ER L+
Sbjct: 128 GRQLGSKTLFVGKALRKDERMEMLK 152
>gi|449687377|ref|XP_002170842.2| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Hydra magnipapillata]
Length = 316
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 32/232 (13%)
Query: 33 LRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK 92
L L S L++S S + + F+ L +++ L+ +F++FG I S V+ ++ +
Sbjct: 31 LNLESQLLSSSKTQS-LGSKIFVKC---LHEDVNDSDLNHLFARFGSITSCYVLRDKNRR 86
Query: 93 SKGYGFVQYSTQESALNAIEKL----YAATVEGMELY------APSLR------------ 130
SKG G V++ST++ A +AI K+ + +E + P LR
Sbjct: 87 SKGSGVVKFSTEQEATDAIRKMNGTMFMTKTLCVEFFKCKKESVPELRIKASSSIKSASL 146
Query: 131 ---AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS 187
+ R +S++ N K D V ++ + NL ++N++DDVD+ L + FS G I S
Sbjct: 147 LDLSTRSAQSSTINPRSTK---DSVKNDLKNCNLRIENLDDDVDDNGLYRLFSCFGKIKS 203
Query: 188 VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
K+M N G SKG+G+VC+ +EA++AI+++NG+ K V +R+
Sbjct: 204 AKVMTYNNGKSKGYGYVCYETNEEASKAISSMNGVQLSSKETLVITYYEQRK 255
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%)
Query: 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
L ++VK +++DV++ +L F++ G I+S ++R SKG G V FS EA AI
Sbjct: 46 LGSKIFVKCLHEDVNDSDLNHLFARFGSITSCYVLRDKNRRSKGSGVVKFSTEQEATDAI 105
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLR 245
+NG +F K L V + K+E LR
Sbjct: 106 RKMNGTMFMTKTLCVEFFKCKKESVPELR 134
>gi|156837090|ref|XP_001642579.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
gi|156113126|gb|EDO14721.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 58/85 (68%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL+VKN++D VD+ +L++ FS G I S K+MRT G SK FGFVCFS P+EA RAI
Sbjct: 22 NLFVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFSTPEEATRAITEK 81
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
N + KPLYVAIAQ K R + L
Sbjct: 82 NQQIVAGKPLYVAIAQRKEVRRAQL 106
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++D+ KL + FS FG I S+KV+ ++DGKSK +GFV +ST E A AI +
Sbjct: 24 FVKNLDDSVDDEKLQEEFSPFGTIISAKVMRTEDGKSKNFGFVCFSTPEEATRAITEKNQ 83
Query: 117 ATVEGMELY 125
V G LY
Sbjct: 84 QIVAGKPLY 92
>gi|296424904|ref|XP_002841985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638239|emb|CAZ86176.1| unnamed protein product [Tuber melanosporum]
Length = 374
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 87/180 (48%), Gaps = 24/180 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + S+GYGFV Y T E+A NAI+ +
Sbjct: 144 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNG 203
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ R + E A+F N+YVKN+D +VT+E
Sbjct: 204 MLLNEKKVFVGHHIPKKDRQSKFDEMKANFTNVYVKNIDPEVTDE--------------- 248
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + F G I+S + R G+S+GFGFV F A +A+ L+ + LY
Sbjct: 249 ---EFRTMFENYGPITSASLSRDQDGVSRGFGFVNFQEHQHAAKAVEELHESELKGQTLY 305
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAA 117
L ++ L ++FS G++ S + V +D +S GY +V Y+ A+E+L
Sbjct: 60 LEPSVTEAMLFELFSTIGNVAS--IRVCRDAVTRRSLGYSYVNYNNTADGERALEELNYT 117
Query: 118 TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQ 177
++G R RI S D + N+++KN++ +D L
Sbjct: 118 LIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNKALHD 159
Query: 178 YFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
F+ G I S K+ + S+G+GFV + + AN AI +NG+L ++K ++V K
Sbjct: 160 TFAAFGNILSCKVAQDEFSNSRGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPK 219
Query: 238 RERTSYLRIMYA 249
++R S M A
Sbjct: 220 KDRQSKFDEMKA 231
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + +F +G I S+ + QDG S+G+GFV + + A A+E+L+
Sbjct: 237 YVKNIDPEVTDEEFRTMFENYGPITSASLSRDQDGVSRGFGFVNFQEHQHAAKAVEELHE 296
Query: 117 ATVEGMELYAPSLR 130
+ ++G LY LR
Sbjct: 297 SELKGQTLYPLELR 310
>gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa]
Length = 183
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 93/163 (57%), Gaps = 11/163 (6%)
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVK 164
A+++L + E Y GR Q+ + + KNL + ++ + NLY+K
Sbjct: 1 QAVQELNGKKFDDKEWYV-----GRAQKKSGREMELKEKFEKNLQE-AADKYQNTNLYLK 54
Query: 165 NINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF 224
N++D VD+ +L++ F++ G I+S K+MR + G+S+G GFV F + ++A+RA+ +N +
Sbjct: 55 NLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMV 114
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAKQGP-GLASTNFPVHPTL 266
KPLYVA+AQ K +R + L+ +++ P LA + P P
Sbjct: 115 GSKPLYVALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMF 157
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ++D+ KL ++F+++G I S KV+ +G S+G GFV + + E A A+ ++ +
Sbjct: 52 YLKNLDDSVDDDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNS 111
Query: 117 ATVEGMELY 125
V LY
Sbjct: 112 KMVGSKPLY 120
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 84/172 (48%), Gaps = 32/172 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TIDN L FS FG+I S KV + GKSK YGFV Y +ESA AIEK
Sbjct: 107 FVKNLDKTIDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEK--- 163
Query: 117 ATVEGMELYAPSLRAG-------RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
V GM+L + ++ G R F NLYVKN D VT
Sbjct: 164 --VNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDTVT---------------- 205
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
E LK+ FS G I+S+ + N+ ++ F F+ +S+ D A A+ LNG
Sbjct: 206 --EAHLKELFSPYGEITSMIVKSDNK--NRKFCFINYSDADSARNAMENLNG 253
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 60/86 (69%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLY+KN++D +D+ LK+ F G I+S K+M+ ++ SKGFGFVCF +EAN+A+ +
Sbjct: 401 NLYIKNLDDSMDDQTLKELFEPYGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEM 460
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
+ + + KPLYV +A+ + +R S L+
Sbjct: 461 HLKIINGKPLYVGLAEKREQRLSRLQ 486
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 31/193 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L+ + L++IF+ G + S +V S KS GY +V Y A A++ L
Sbjct: 19 YVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTLN 78
Query: 116 AATVEGM------ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
++G PSLR N++VKN++
Sbjct: 79 YTNIKGQPARLMWSHRDPSLRKSGT------------------------GNIFVKNLDKT 114
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D L FS G I S K+ G SK +GFV + + + A AI +NG+ K +
Sbjct: 115 IDNKALFDTFSMFGNILSCKVATDEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNV 174
Query: 230 YVAIAQTKRERTS 242
YV K ER +
Sbjct: 175 YVGHFIKKSERAT 187
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 18 TPFSLYVGDLDSTDLLR-LCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSK 76
TP LYVG S L A +++ S P + NL ++D+ L ++F
Sbjct: 363 TPNILYVGPHQSRARRHALLKAKFDTLNTESRNKHPGVNLYIKNLDDSMDDQTLKELFEP 422
Query: 77 FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
+G I S+KV+ +SKG+GFV + T E A A+ +++ + G LY
Sbjct: 423 YGTITSAKVMKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLY 471
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTL 219
LYV ++++DV E L + F+ G + S+++ R + S G+ +V + N +A RA++TL
Sbjct: 18 LYVGDLSEDVTEAVLYEIFNTVGHVLSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
N +P R+M++ + P L
Sbjct: 78 NYTNIKGQP---------------ARLMWSHRDPSL 98
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 97/170 (57%), Gaps = 9/170 (5%)
Query: 88 SQDGKSKGYGFVQYSTQESALNAI----EKLYAATVEGMELYAPSLRAGRIQESASFNNL 143
S + +S G+GFV ++T E+A A+ +K+Y T +G E+ +L GR Q+ +
Sbjct: 275 STEPESLGFGFVNFATHEAAAAAVEAMNDKVYKVTEDGDEV-EKALFVGRAQKKSERQAE 333
Query: 144 YVKNLDDDVTEEILD---KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISK 199
+ + E I NLYVKN++D V + L+ F G I+S KIMR + S+
Sbjct: 334 LRSKYEAEKMERIAKFQGVNLYVKNLDDAVTDDMLRDEFGGMGTITSAKIMRDAKTNNSR 393
Query: 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
GFGFVCFS P++A RA+N ++G + KP+YV++AQ + R + L +A
Sbjct: 394 GFGFVCFSTPEDATRAVNEMSGKIVAGKPIYVSLAQRREVRRAQLEAQHA 443
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 18/135 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL IDN +L+ FS FG+I S KVV ++ G SKGYG+V Y T E+A +AI+KL
Sbjct: 104 FVKNLHEGIDNKQLYDTFSLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLD 163
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G E+ ++++ D ++ + NL++KN+ + D+ L
Sbjct: 164 GMLIDGKEVQV---------------GVFMRR--DTRPDQEVYTNLFIKNMPYEWDDKRL 206
Query: 176 KQYFSQCGIISSVKI 190
+ F++ G I S +
Sbjct: 207 EAEFAEFGEIVSASV 221
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 24/188 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ +L ++ L++IF+ G + S + V +D +S GY +V Y A A++
Sbjct: 16 YVGDLLPEVNEGLLYEIFNAVGPVAS--IRVCRDAVTRRSLGYAYVNYHQAADAERALDS 73
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ ++G + RI S ++ + N++VKN+++ +D
Sbjct: 74 MNFTDIKG--------KPCRIMWSQRDPSVRRSGV----------GNIFVKNLHEGIDNK 115
Query: 174 ELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L FS G I S K++ G+SKG+G+V + + A AI+ L+G+L K + V
Sbjct: 116 QLYDTFSLFGNILSCKVVCDRETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVG 175
Query: 233 IAQTKRER 240
+ + R
Sbjct: 176 VFMRRDTR 183
>gi|50545625|ref|XP_500351.1| YALI0B00616p [Yarrowia lipolytica]
gi|49646217|emb|CAG82565.1| YALI0B00616p [Yarrowia lipolytica CLIB122]
Length = 589
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 2/181 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L+ L F +FG + S + + + ++KG+GFV + A+ A+ L
Sbjct: 193 FVRGLSRETTEEALRAEFERFGAVTSLLLPLDESHRAKGFGFVNFEEHRDAVTAVAALDG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A + G + S +++ A Y N + + NLY+ N+N ++ L+
Sbjct: 253 AELCGARISV-SRAQSKVERQAELKRAYEANRIERL-RNARGTNLYITNLNPAINNERLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
YFS+ G I+SV+IM G SKGFGFVCF +PD A+ AI ++ L VAIA
Sbjct: 311 AYFSKFGEITSVRIMLDAVGNSKGFGFVCFRDPDHASNAIAEMHNRPIEGNVLQVAIAHK 370
Query: 237 K 237
K
Sbjct: 371 K 371
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL+V+ ++ + E L+ F + G ++S+ + +KGFGFV F +A A+ L
Sbjct: 191 NLFVRGLSRETTEEALRAEFERFGAVTSLLLPLDESHRAKGFGFVNFEEHRDAVTAVAAL 250
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+G + V+ AQ+K ER + L+ Y
Sbjct: 251 DGAELCGARISVSRAQSKVERQAELKRAY 279
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 20/200 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L S + L++ FS G + S +V +S GY +V + A A++ +
Sbjct: 14 YVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L + N+++KN++ +D L
Sbjct: 74 FDVIKGKPI--------RIMWSQRDPSLRKSGVG----------NVFIKNLDKSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 116 YDTFSAFGNILSCKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 174
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K ER ++L Y ++ G+
Sbjct: 175 RKEERKAHLTNQYMQRVAGM 194
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 98/201 (48%), Gaps = 26/201 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S K+V + G S+GYGFV + T+E+A AIEK+
Sbjct: 107 FIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHG-SRGYGFVHFETEEAARIAIEKVNG 165
Query: 117 ATVEGMELYAPSL--RAGRIQ----ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G +++ R R++ + FNN+YVKN +++ +E
Sbjct: 166 MLLNGKKVFVGRFMSRRERLEVLGDKMRKFNNVYVKNFSEEINDET-------------- 211
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGF-VCFSNPDEANRAINTLNGILFHQKPL 229
L+ F G I S K+M + V F +P+ A +A+ LNG K L
Sbjct: 212 ----LRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKIL 267
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
YV AQ K ER + L+ + +
Sbjct: 268 YVGRAQKKIERQAELKEKFER 288
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + +++ R T R + G+ +V F P +A RA+
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSL--GYAYVNFQQPADAERAL 74
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N +P +RIM++++ P L
Sbjct: 75 DTMNFDTIKGRP---------------IRIMWSQRDPSL 98
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGF-VQYSTQESALNAIEKLY 115
+ N + I++ L +F +G I S+KV+ V + E+A A+E L
Sbjct: 199 YVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALN 258
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVD 171
G LY GR Q+ +K + + E +++ NLYVKN++D++D
Sbjct: 259 GNDNSGKILYV-----GRAQKKIE-RQAELKEKFERIRMERINRYQGVNLYVKNLDDNID 312
Query: 172 EIELKQYFSQCG 183
+ L++ F+Q G
Sbjct: 313 DERLRKEFAQFG 324
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 140/344 (40%), Gaps = 92/344 (26%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-- 114
+ NL ++++ KL ++FS FG++ S+KV ++ G+ +V Y+T E+A A+E+L
Sbjct: 187 YVKNLDPSVNDEKLKEVFSAFGEVTSAKVRDLGANQTVGFAYVAYATHEAAAKAVEELDE 246
Query: 115 --YAATVEGMELYAPSLRAGRIQES-------------ASFNNLYVKNLDDDVTEEILDK 159
EGM+L R+ ++ + + NLYVKN DD VT E
Sbjct: 247 KESPLAKEGMKLSVCRFRSRDERQRERERLRRERQQQHSKYPNLYVKNFDDTVTSE---- 302
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIM--RTNRGISKGFGFVCFSNPDEANRAIN 217
LK+ F +CG SV +M R R +S+ FGFV F A+RAI
Sbjct: 303 --------------RLKELFERCGETVSVSVMMDRATR-VSRCFGFVSFKEQSAASRAIQ 347
Query: 218 TLNG-ILFHQKPLYVAIAQTKRERTSYLRIMYAKQ-----------------------GP 253
L+G +PL+V A K R L M KQ GP
Sbjct: 348 ELHGSTALGPRPLFVTYALRKDARRQTLEDMRNKQPRMRQPPMGSLMGGMMGPQLGFMGP 407
Query: 254 GLASTNFP-VHPTLYQRALQVYQAPGFRHGGMIP---------------NGFSSPPPSPL 297
P V+P + + R G P +PPP P
Sbjct: 408 QAMFNGVPFVNPRMSMMPTPMGMGGQLRPMGPTPMNQVRARPMPQRPPMQPIMAPPPQPQ 467
Query: 298 FLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLY 341
L GQ NL+ ++LA +P+++K++LG+ LY
Sbjct: 468 SLASQGQ----NLS----------TVLANLTPEQQKNVLGERLY 497
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 25/164 (15%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L ++D + L ++FSK+G + + + +++G+S+GY + Y +ESA+ A++++ ++
Sbjct: 103 LPPSVDTYALKEMFSKYGRLTAIGLATNENGESRGYARISYEKEESAIQAVQEVNGMVID 162
Query: 121 G----MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+E Y P R ++++ F NLYVKNLD V +E +LK
Sbjct: 163 DCAITVERYQPHHREEQLKQ---FTNLYVKNLDPSVNDE------------------KLK 201
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+ FS G ++S K+ + GF +V ++ + A +A+ L+
Sbjct: 202 EVFSAFGEVTSAKVRDLGANQTVGFAYVAYATHEAAAKAVEELD 245
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 20/165 (12%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
L ++ KL+ F + G + S +V V S KS GYG+V + A A+++
Sbjct: 16 LDPNLNEQKLYDHFVRLGPVASVRVCVDSVTQKSLGYGYVNFQNPADAEKALDQ------ 69
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G++L + +R +IQ S V N+ VK + VD LK+ F
Sbjct: 70 AGVKLGSKHIRIAKIQRDPSKRRSGVTNI-------------VVKKLPPSVDTYALKEMF 116
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF 224
S+ G ++++ + G S+G+ + + + A +A+ +NG++
Sbjct: 117 SKYGRLTAIGLATNENGESRGYARISYEKEESAIQAVQEVNGMVI 161
>gi|399950033|gb|AFP65689.1| polyadenylate-binding protein [Chroomonas mesostigmatica CCMP1168]
Length = 490
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 23/193 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ DN L ++FS+FG I S K+ + ++ +S GYGFV Y ++ + AIEK+
Sbjct: 129 FIKNIPRRYDNKSLSKLFSQFGKILSCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNN 188
Query: 117 ATVEGMELYAPSL-----RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
++G +++ R R F N+Y+KN+ + + +
Sbjct: 189 CFIDGEKIFVGPFISKVKRNNRNNSKLRFTNVYIKNI-----------------LFQNCN 231
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
EI +K F G I+S+ I + N GF FV F NP++A AI +NG K LYV
Sbjct: 232 EIYIKDLFEIFGPITSIFIPKANEA-PLGFAFVNFENPEDAEDAIFKMNGKKIKGKTLYV 290
Query: 232 AIAQTKRERTSYL 244
A+T+ ER L
Sbjct: 291 GKAETRIERQRRL 303
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 108/249 (43%), Gaps = 36/249 (14%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEKLYA 116
+L+ ++ L +IFSK G + S + + +D G S+GY +V + + A A + L
Sbjct: 41 DLSIYVEESSLMKIFSKIGKVHS--IQICRDFSTGISRGYSYVNFLNPKDAQKAFKLLNY 98
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T E + Y P LR +Q+ K+L T NL++KNI D L
Sbjct: 99 YTDETLH-YKP-LRIMWVQKD--------KSLRFSGTG-----NLFIKNIPRRYDNKSLS 143
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G I S KI S G+GFV + ++ +AI +N + ++V +
Sbjct: 144 KLFSQFGKILSCKIALDENKRSMGYGFVHYKEEKDSKKAIEKMNNCFIDGEKIFVGPFIS 203
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSP 296
K +R + + L TN + L+Q ++Y F G P +
Sbjct: 204 KVKRNN-------RNNSKLRFTNVYIKNILFQNCNEIYIKDLFEIFG---------PITS 247
Query: 297 LFLTRAGQA 305
+F+ +A +A
Sbjct: 248 IFIPKANEA 256
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINT 218
+LYV +++ V+E L + FS+ G + S++I R + GIS+G+ +V F NP +A +A
Sbjct: 36 SLYVGDLSIYVEESSLMKIFSKIGKVHSIQICRDFSTGISRGYSYVNFLNPKDAQKAFKL 95
Query: 219 LNGI---LFHQKPLYVAIAQ 235
LN H KPL + Q
Sbjct: 96 LNYYTDETLHYKPLRIMWVQ 115
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN+ +DVD+ ELK+ F G ++SVK+M ++G+S+GFGFVCFS +EA +A+ +
Sbjct: 376 NLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+ L KPLYV + + + +R L+ Y
Sbjct: 436 HLKLIGGKPLYVGMHEKREQRLERLQQRY 464
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 17/165 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL IDN L+ FS FG+I S KV ++ DGKS+G+GFV + + ESA AI KL
Sbjct: 139 YVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL-- 196
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
GM++ ++ +++A N+ KN N+Y+K+I +E ++K
Sbjct: 197 ---NGMQIGEKTVYVAPFKKTAERNDGTPKNF----------TNVYIKHIPASWNEEKIK 243
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ F G I+S+ + +G + F FV ++ ++A A+ ++G
Sbjct: 244 EEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDG 286
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 31/191 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +LA + L+++F+ G + S +V S KS GY ++ + A A++ L
Sbjct: 51 YAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLN 110
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++G P+LR + N+YVKNLD ++ +K LY
Sbjct: 111 YSPIKGRPCRLMWSHRDPALR------RSGAGNVYVKNLDRNID----NKALY------- 153
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
FS G I S K+ T G S+GFGFV F + + A AI LNG+ +K +
Sbjct: 154 -------DTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTV 206
Query: 230 YVAIAQTKRER 240
YVA + ER
Sbjct: 207 YVAPFKKTAER 217
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D+ +L ++F FG + S KV+V G S+G+GFV +ST E A A+ ++
Sbjct: 378 YVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMHL 437
Query: 117 ATVEGMELY 125
+ G LY
Sbjct: 438 KLIGGKPLY 446
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
+LY ++ DV E L + F+ G ++S+++ R + S G+ ++ F N +A RA++T
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
LN +P R+M++ + P L
Sbjct: 109 LNYSPIKGRP---------------CRLMWSHRDPAL 130
>gi|406602053|emb|CCH46373.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 694
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 116/259 (44%), Gaps = 46/259 (17%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L I L +IF FG+I SSK+V + G+SKGYGF+ YS SA +AI KL V
Sbjct: 136 LGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAISKLNGLLVN 195
Query: 121 GMELY-----APSLRAGRIQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
G +LY A R RI E ++F NLY+KNL D T +D+ E
Sbjct: 196 GSKLYLNHHIAKKERIQRIDFEKSNFTNLYIKNLPIDYT----------------IDQFE 239
Query: 175 LKQYFSQCGIISSVKIMRTNRG--ISKGFGFVCFSNPDEANRAINTLNGILFHQKP---L 229
F++ G ISS + N G SK FGF+ F N + A AI +LN F P L
Sbjct: 240 --SLFAKFGEISSSFLPDLNDGDQTSKRFGFINFKNHESAISAIESLNN--FEISPNQFL 295
Query: 230 YVAIAQTKRERTSYLRIMYAKQGPGLAST---------NFPVHPTLYQRALQVYQAPGFR 280
V+ AQ + ER + T N + P Q A ++Q+P
Sbjct: 296 SVSRAQRRDERNEQFHNNLNPKNSNNYQTTPYGQFQIRNNSISP---QPAPILFQSPPIT 352
Query: 281 HGGMIPNGFSSP---PPSP 296
G IP +SP PP P
Sbjct: 353 SQGSIPGIITSPITQPPVP 371
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 24/154 (15%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYV+N+ +D+ L F+ GII S KIM T+ G S+G+GFVCF EA+RA+ +
Sbjct: 426 NLYVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIAM 485
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF 279
+G + H + L+V+ AQ ++ + K P+HP G
Sbjct: 486 HGNVLHGQMLHVSFAQKNNKK------RFGK----QQQQQIPIHPN------------GS 523
Query: 280 RHGGMIPNGFSSPPPSPLFLTRAGQAAANNLTNG 313
+ G+ N + PP + T+AGQ NG
Sbjct: 524 YYNGLYQN--PNQPPYQYYNTQAGQPVPPPSGNG 555
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+YV+ + ++ +L + F G I+S KI+ G SKG+GF+ +S+ A+ AI+ L
Sbjct: 130 NIYVRGLGPEITTEDLFKIFEPFGEITSSKIVNDEFGRSKGYGFINYSDGSSADDAISKL 189
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQG-PGLASTNFPVHPTLYQ 268
NG+L + LY+ K+ER RI + K L N P+ T+ Q
Sbjct: 190 NGLLVNGSKLYLNHHIAKKERIQ--RIDFEKSNFTNLYIKNLPIDYTIDQ 237
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA +ID+ LH F+ FG I S+K++ + +G+S+GYGFV + T A A+ ++
Sbjct: 428 YVRNLAPSIDDSILHSSFAPFGIIVSAKIMTTDEGESRGYGFVCFRTSPEASRALIAMHG 487
Query: 117 ATVEGMELYA 126
+ G L+
Sbjct: 488 NVLHGQMLHV 497
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN+ +DVD+ ELK+ F G ++SVK+M ++G+S+GFGFVCFS +EA +A+ +
Sbjct: 376 NLYVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDM 435
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+ L KPLYV + + + +R L+ Y
Sbjct: 436 HLKLIGGKPLYVGMHEKREQRLERLQQRY 464
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 17/165 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL IDN L+ FS FG+I S KV ++ DGKS+G+GFV + + ESA AI KL
Sbjct: 139 YVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL-- 196
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
GM++ ++ +++A N+ KN N+Y+K+I +E ++K
Sbjct: 197 ---NGMQIGEKTVYVAPFKKTAERNDGTPKNF----------TNVYIKHIPASWNEEKIK 243
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ F G I+S+ + +G + F FV ++ ++A A+ ++G
Sbjct: 244 EEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDG 286
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 31/191 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +LA + L+++F+ G + S +V S KS GY ++ + A A++ L
Sbjct: 51 YAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLN 110
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++G P+LR + N+YVKNLD ++ +K LY
Sbjct: 111 YSPIKGRPCRLMWSHRDPALR------RSGAGNVYVKNLDRNID----NKALY------- 153
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
FS G I S K+ T G S+GFGFV F + + A AI LNG+ +K +
Sbjct: 154 -------DTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTV 206
Query: 230 YVAIAQTKRER 240
YVA + ER
Sbjct: 207 YVAPFKKTAER 217
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D+ +L ++F FG + S KV+V G S+G+GFV +ST E A A+ ++
Sbjct: 378 YVKNLGEDVDDAELKKMFEPFGTVTSVKVMVDDKGVSRGFGFVCFSTHEEATKAVTDMHL 437
Query: 117 ATVEGMELY 125
+ G LY
Sbjct: 438 KLIGGKPLY 446
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
+LY ++ DV E L + F+ G ++S+++ R + S G+ ++ F N +A RA++T
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDT 108
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
LN +P R+M++ + P L
Sbjct: 109 LNYSPIKGRP---------------CRLMWSHRDPAL 130
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 97/180 (53%), Gaps = 6/180 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL + KLH +F +G + S KV+ G SKGYGFV+YS + A +AI +L
Sbjct: 322 YVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLN 381
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLY-VKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+EG ++ +R + S S ++ + D +T+E+ N+YV+N+ ++ +
Sbjct: 382 GHLIEGKKM---EVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDK 438
Query: 175 LKQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F G ++S K+ M GISKG+GFV FS+P +A A+ LNG L + + V +
Sbjct: 439 LLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELNGCLVEGRKILVRV 498
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 91/180 (50%), Gaps = 18/180 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++ + KL ++F FG I S+VV G SKGYGFVQYS A AI+ +
Sbjct: 232 FVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHMN 291
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
VEG L +R S S T+E+ LYV N+ + E +L
Sbjct: 292 GRMVEGRML---EVRLAGAPSSGS-------------TKEMDMSKLYVCNLPLLLHEDKL 335
Query: 176 KQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
F G ++SVK+MR + G+SKG+GFV +S+P A AI LNG L K + V +A
Sbjct: 336 HDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVRVA 395
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 10/179 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL ++ KL +F +G + S+KV + G SKGYGFV++S A +A+ +L
Sbjct: 426 YVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIELN 485
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
VEG ++ R++ +S + N +EI NLYV NI +++ +L
Sbjct: 486 GCLVEGRKILV------RVRPPSSPVESHANN---RTLKEIDMSNLYVCNIPSSMNKAKL 536
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ F G I+ ++ + SKG+GFV F++ A A+ +NG L + + V +A
Sbjct: 537 VELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISVRVA 595
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 11/176 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S+++ KL ++F FG I + VV + SKGYGFV+++ A A+ +
Sbjct: 523 YVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNSSKGYGFVKFADSHCAAEAVAMMNG 582
Query: 117 ATVEGMELYAPSLR-AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
A +EG + S+R AG +S + + + + + + EI + LYV N+ + +L
Sbjct: 583 ALIEGETI---SVRVAGLSPSVSSSVSQHSPHSEINASPEINNCRLYVTNLPQTMSADKL 639
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
F G I V +M + FV +++ + A +A+ ++G L K L V
Sbjct: 640 VSLFMPFGQIDRV-VMYAE------YSFVLYADINSAAKALKHMDGYLIEGKRLVV 688
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 81/189 (42%), Gaps = 10/189 (5%)
Query: 63 STIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
S + +L QIF +G+I +K GYG ++Y+ SA AI+ L + G
Sbjct: 726 SAVTCEQLVQIFCLYGEIVQAKKF------DAGYGMIRYANASSAAAAIDHLDGYQIGGS 779
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
L AG ES + +I NLYV + V +L + F C
Sbjct: 780 TLVV--RVAGLPAESDVATFARTPQTPGNEHRQIDMTNLYVGYLPPYVTTDKLIELFLPC 837
Query: 183 GIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK-RER 240
G I+ K++ G+SKGFGFV F++ A AI +NG L V A + +
Sbjct: 838 GQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAVRTAGVQPSDM 897
Query: 241 TSYLRIMYA 249
SY+ Y+
Sbjct: 898 ASYMAHFYS 906
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 81/167 (48%), Gaps = 22/167 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S KV + GKSK YGFV Y +ESA AIEK+
Sbjct: 107 FVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNG 166
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ +Y R+ R F NLYVKN D VT E
Sbjct: 167 IQLGSKNVYVGHFIKRSERATNDTKFTNLYVKNFPDSVT------------------EAH 208
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
LKQ FS G I+S+ + N+ ++ F F+ +++ + A A+ LNG
Sbjct: 209 LKQLFSPYGEITSMIVKTDNK--NRKFCFINYADSESAKNAMENLNG 253
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 61/86 (70%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLY+KN++D +D+ LK+ F G I+S K+MR ++ SKGFGFVCF+ +EAN+A+ +
Sbjct: 441 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEM 500
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
+ + + KPLYV +A+ + +R S L+
Sbjct: 501 HLKIINGKPLYVGLAEKREQRLSRLQ 526
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 33/205 (16%)
Query: 45 VHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYST 103
+H + +T + + +L + L++IF+ G + S +V S KS GY +V Y
Sbjct: 9 MHPSFSTASL--YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 104 QESALNAIEKLYAATVEGM------ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ L ++G PSLR + N++VKNLD
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLR------KSGAGNIFVKNLD-------- 112
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+D L FS G I S K+ G SK +GFV + + + A AI
Sbjct: 113 ----------KSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIE 162
Query: 218 TLNGILFHQKPLYVAIAQTKRERTS 242
+NGI K +YV + ER +
Sbjct: 163 KVNGIQLGSKNVYVGHFIKRSERAT 187
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 4 SLRALNNNDSAI--LGTPFSLYVGDLDSTDLLR-LCSALIASIDVHSAMATPTFIPFTVN 60
S +N DS +P LYVG S + A ++++ S + N
Sbjct: 387 STNGINKKDSGSESADSPNILYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKN 446
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L ID+ L ++F +G I S+KV+ +SKG+GFV ++ QE A A+ +++ +
Sbjct: 447 LDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFAQQEEANKAVTEMHLKIIN 506
Query: 121 GMELY 125
G LY
Sbjct: 507 GKPLY 511
>gi|55417872|gb|AAV50098.1| polyadenylate binding protein [Caenorhabditis remanei]
Length = 179
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 57/89 (64%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN+++ VD+ LK+ F G I+S K+M G SKGFGFVCF P+EA A+ +
Sbjct: 30 NLYVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEM 89
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMY 248
N + KPLYVA+AQ K +R + L Y
Sbjct: 90 NSKMVCSKPLYVALAQRKEDRRAQLASQY 118
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ++D+ L + F FG+I S+KV+ ++G+SKG+GFV + E A A+ ++ +
Sbjct: 32 YVKNLDESVDDEALKKQFENFGNITSAKVMTDENGRSKGFGFVCFEKPEEATTAVTEMNS 91
Query: 117 ATVEGMELY 125
V LY
Sbjct: 92 KMVCSKPLY 100
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 131/276 (47%), Gaps = 35/276 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N + D L + F F + DG + +G+V + ++A+ A++ L
Sbjct: 192 YVKNFPADWDEATLRKAFEMF---------AAADGSA--FGWVNFEGHDAAVAAMDALNG 240
Query: 117 AT-VEGMELYAP-----SLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNIN 167
A+ + G AP L GR Q+ D E I NL+VKN++
Sbjct: 241 ASELPGHAGTAPITLKSPLFVGRAQKKVERERELKAKFDAAKIERIKKYQGVNLFVKNLD 300
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
D +D+ +L+++F++ G I+S ++MR G S+GFGFVCFS+P+EA +A+ +N L
Sbjct: 301 DALDDDQLREHFTEYGTITSARVMREPATGTSRGFGFVCFSSPEEAAKAVTEMNNKLVLG 360
Query: 227 KPLYVAIAQTKRERTSYLRIMYAKQ-GPGLASTNF-PVHPTLYQRALQVYQAPGFRHGGM 284
KP++VA+AQ K R + L +A++ P S + P +Y APG GM
Sbjct: 361 KPIFVALAQRKEVRRAQLEAQHAQRLHPAHLSAPYGAAMPIMYAAG-----APGGHPMGM 415
Query: 285 IPNGFSSPPPSPLFLTRAGQAAANNLTNGNQRAAAN 320
P G P P+ AGQ + G+ R + N
Sbjct: 416 APQGH---PGVPI----AGQMQQMSSQGGSNRRSRN 444
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 90/203 (44%), Gaps = 39/203 (19%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S+ID+ L FS FG+I S KV + G+S+GYG+V Y ++++A +AI K+ +
Sbjct: 104 FVKNLDSSIDHKALFDTFSLFGNILSCKVATDEAGRSQGYGYVHYESEDAATDAINKINS 163
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T+ E+Y F ++ D T NLYVKN D DE L+
Sbjct: 164 MTICDKEVYV-----------GHFVRRTERSGQSDWT------NLYVKNFPADWDEATLR 206
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-----------LFH 225
+ F FG+V F D A A++ LNG +
Sbjct: 207 KAFEMFAAAD-----------GSAFGWVNFEGHDAAVAAMDALNGASELPGHAGTAPITL 255
Query: 226 QKPLYVAIAQTKRERTSYLRIMY 248
+ PL+V AQ K ER L+ +
Sbjct: 256 KSPLFVGRAQKKVERERELKAKF 278
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 43/224 (19%)
Query: 41 ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYG 97
+S+ HSA + +LA+ L +IF+ G + S + V +D +S GY
Sbjct: 6 SSVPFHSASL------YVGDLATDASEGLLFEIFNTVGPVAS--IRVCRDAVTRRSLGYA 57
Query: 98 FVQY---STQESALNAIEKLYAATVEGMELYA---PSLRAGRIQESASFNNLYVKNLDDD 151
+V + S E AL+ + + +++ P+LR + N++VKNLD
Sbjct: 58 YVNFHNVSDAERALDTMNYTLIKSKPCRIMWSQRDPTLR------KSGVGNVFVKNLD-- 109
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDE 211
+D L FS G I S K+ G S+G+G+V + + D
Sbjct: 110 ----------------SSIDHKALFDTFSLFGNILSCKVATDEAGRSQGYGYVHYESEDA 153
Query: 212 ANRAINTLNGILFHQKPLYVA--IAQTKRERTSYLRIMYAKQGP 253
A AIN +N + K +YV + +T+R S +Y K P
Sbjct: 154 ATDAINKINSMTICDKEVYVGHFVRRTERSGQSDWTNLYVKNFP 197
>gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 77/146 (52%), Gaps = 26/146 (17%)
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+ + +LK+ FS G I+S K+MR G+SKG GFV FSNP+EA+RA++ +NG + KPL
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 230 YVAIAQTKRERTSYLRI-------------------MYAKQGPGLASTNF---PVHPTLY 267
YVA+AQ K ER + L+ MY GPGL F P L
Sbjct: 61 YVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPAMLP 120
Query: 268 QRALQVYQ---APGFRH-GGMIPNGF 289
+A YQ PG R GG +PN F
Sbjct: 121 PQAGFGYQQQLVPGMRPGGGPMPNFF 146
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 65 IDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124
I + KL ++FS +G I S KV+ G SKG GFV +S E A A+ ++ V L
Sbjct: 1 ISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPL 60
Query: 125 Y 125
Y
Sbjct: 61 Y 61
>gi|340386042|ref|XP_003391517.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Amphimedon queenslandica]
Length = 393
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 13/180 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ L+ FS FG+I S KV +G+SKG GFV + QE+A AIEK+
Sbjct: 102 FIKNLERSIDHKALYDTFSAFGNILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEKVNG 161
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ + + FN Y ++VKN +D + L
Sbjct: 162 QLLNNRKVHVGKFIPRKDRSHTGFNQHYT-------------NVVFVKNFGEDFTDEMLY 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+F + G I++ +M+ N G+SK FGFV F + + A+ A+ ++ + + + +Y + A +
Sbjct: 209 NFFEKFGSIAAAVVMKDNEGVSKDFGFVSFESHEAASAAVQAVHSSIVNGRQVYCSRAHS 268
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 39/203 (19%)
Query: 52 PTFIP----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQ 104
P+F P + +L ++ L FSK G + S + V +D +S GY ++ +
Sbjct: 5 PSFPPLQSLYVGDLLPDVNEADLFDHFSKAGPVLS--ICVCRDLITKRSLGYAYIYFQQP 62
Query: 105 ESALNAIEKLYAATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILD 158
A A + + ++G Y PSLR R
Sbjct: 63 ADAERAFDTMNYEPIKGQPCYIMWSQRDPSLRRSRA------------------------ 98
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
++++KN+ +D L FS G I S K+ G SKG GFV F + A+ AI
Sbjct: 99 GHIFIKNLERSIDHKALYDTFSAFGNILSCKVATDLNGQSKGIGFVHFDEQEAADLAIEK 158
Query: 219 LNGILFHQKPLYVAIAQTKRERT 241
+NG L + + ++V +++R+
Sbjct: 159 VNGQLLNNRKVHVGKFIPRKDRS 181
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIE 112
T + F N + L+ F KFG I ++ V+ +G SK +GFV + + E+A A++
Sbjct: 190 TNVVFVKNFGEDFTDEMLYNFFEKFGSIAAAVVMKDNEGVSKDFGFVSFESHEAASAAVQ 249
Query: 113 KLYAATVEGMELYA 126
++++ V G ++Y
Sbjct: 250 AVHSSIVNGRQVYC 263
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 72/108 (66%), Gaps = 5/108 (4%)
Query: 138 ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI 197
A F+NL V+N + + NLY+KN++D +D+I L++ F G I+S K+MR +
Sbjct: 434 AKFDNLNVENKN-----KHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQ 488
Query: 198 SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
SKGFGFVCF++ +EAN+A+ ++ + + KPLYV +A+ + +R S L+
Sbjct: 489 SKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQ 536
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 22/167 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S KV + GKSK YGFV Y +ESA AIEK+
Sbjct: 107 FVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNG 166
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ +Y ++ R F NLYVKN D VT E
Sbjct: 167 VQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVT------------------ETH 208
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
L+Q F+ G I+S+ + N+ ++ F F+ +++ + A A++ LNG
Sbjct: 209 LRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNG 253
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 23/200 (11%)
Query: 45 VHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYST 103
+H + +T + + +L + L++IF+ G + S +V S KS GY +V Y
Sbjct: 9 MHPSFSTASL--YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 104 QESALNAIEKLYAATVEGM-ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
A A++ L ++G S R +++S + N++
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLRKSGT-------------------GNIF 107
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
VKN++ +D L FS G I S K+ G SK +GFV + + + A AI +NG+
Sbjct: 108 VKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGV 167
Query: 223 LFHQKPLYVAIAQTKRERTS 242
K +YV K ER +
Sbjct: 168 QLGSKNVYVGPFIKKSERAT 187
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 18 TPFSLYVGDLDSTDLLR-LCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSK 76
TP LYVG S + A +++V + + NL ID+ L ++F
Sbjct: 413 TPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEP 472
Query: 77 FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
FG I S+KV+ + +SKG+GFV +++QE A A+ +++ + G LY
Sbjct: 473 FGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLY 521
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 81/167 (48%), Gaps = 22/167 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S KV + GKSK YGFV Y +ESA AIEK+
Sbjct: 107 FVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNG 166
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ +Y ++ R F NLYVKN D VT E
Sbjct: 167 IQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDSVT------------------EAH 208
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
LKQ FS G I+S+ + N+ ++ F F+ +++ + A A+ LNG
Sbjct: 209 LKQLFSPFGEITSMIVKTDNK--NRKFCFINYADSESAKNAMENLNG 253
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 62/89 (69%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLY+KN++D +D+ LK+ F G I+S K+MR ++ SKGFGFVCF+ +EANRA+ +
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEM 509
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+ + + KPLYV +A+ + +R S L+ +
Sbjct: 510 HLKIINGKPLYVGLAEKREQRLSRLQQRF 538
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 33/205 (16%)
Query: 45 VHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYST 103
+H + +T + + +L + L++IF+ G + S +V S KS GY +V Y
Sbjct: 9 MHPSFSTASL--YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 104 QESALNAIEKLYAATVEGM------ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ L ++G PSLR + N++VKNLD
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLR------KSGAGNIFVKNLD-------- 112
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+D L FS G I S K+ G SK +GFV + + + A AI
Sbjct: 113 ----------KSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIE 162
Query: 218 TLNGILFHQKPLYVAIAQTKRERTS 242
+NGI K +YV K ER +
Sbjct: 163 KVNGIQLGSKNVYVGHFIKKSERAT 187
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 18 TPFSLYVGDLDSTDLLR-LCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSK 76
+P LYVG S + A ++++ S + NL ID+ L ++F
Sbjct: 412 SPNILYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEP 471
Query: 77 FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
+G I S+KV+ +SKG+GFV ++ QE A A+ +++ + G LY
Sbjct: 472 YGTITSAKVMRDDKEQSKGFGFVCFALQEEANRAVTEMHLKIINGKPLY 520
>gi|403372370|gb|EJY86082.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 695
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 83/164 (50%), Gaps = 21/164 (12%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL + +L F +FGDIQS K+ DG S+GY F+Q+ ++E A A+ + A +
Sbjct: 177 NLDKEVTQQELFDSFKQFGDIQSLKLETYPDGSSRGYAFIQFQSEEEAEKALNAMNQAEI 236
Query: 120 EG--MELYAPSLRAGRIQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+G +E+ +A R + FNNL+VKNL K +DD +LK
Sbjct: 237 KGKKIEINRHEKKATRENPQQTKFNNLFVKNLP--------------KGTDDD----QLK 278
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
F + G I SV + R +G K +G+VCF PD A A+ +N
Sbjct: 279 GLFGKFGEIESVTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMN 322
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 33/168 (19%)
Query: 80 IQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESA 138
++S+KVV+ + K GYG++Q++++E A ++ + + G L RI S
Sbjct: 111 LKSAKVVLHKRTSKPLGYGYLQFNSKEEADRCLQDMNNYVLNGQAL--------RIVHSV 162
Query: 139 S---FN---NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR 192
S +N NL VKNLD +VT++ EL F Q G I S+K+
Sbjct: 163 SKFDYNPKANLLVKNLDKEVTQQ------------------ELFDSFKQFGDIQSLKLET 204
Query: 193 TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
G S+G+ F+ F + +EA +A+N +N K + + + K R
Sbjct: 205 YPDGSSRGYAFIQFQSEEEAEKALNAMNQAEIKGKKIEINRHEKKATR 252
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 15/187 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL D+ +L +F KFG+I+S V + G K YG+V + + A A+ ++
Sbjct: 264 FVKNLPKGTDDDQLKGLFGKFGEIESVTVQRDEQGNLKDYGYVCFKEPDHAEAAVLEMNK 323
Query: 117 ATVEGMELYAPSLRAGRIQE--SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
++ L + + E S N +NL+ + + N+Y+K I ++V E E
Sbjct: 324 KQIDDQFLIVNQHISKKDNEPTQGSRLNPITQNLN-----KTFNSNIYIKFIPNEVTEEE 378
Query: 175 LKQYFS-QCGIISSVKIMRTNRGISK------GFGFVCFSNPDEANRAINTLN-GILFHQ 226
L++ FS + I S+K+ + + I F ++ + A +AI T + +F
Sbjct: 379 LRKTFSMKDANIVSIKLTKFVKKIEDQEVQPYQFAYILYDTVLGAQKAIQTFDQSTVFGN 438
Query: 227 KPLYVAI 233
KPL V +
Sbjct: 439 KPLLVEL 445
>gi|402697283|gb|AFQ90829.1| polyA-binding protein cytoplasmic 1, partial [Dibamus sp. JJF-2012]
Length = 177
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +IDN L+ S G+I S KVV ++G SKGYG V + QE+A AIEK
Sbjct: 2 NLDKSIDNKALYDTXSAXGNILSXKVVCDENG-SKGYGXVHFEXQEAAERAIEKXXXXXX 60
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
N+Y+KN + +D+ LK+ F
Sbjct: 61 XXXXXXXXXXXXXXXXXXXX------------XXXXXXXXNVYIKNFGEXMDDXRLKELF 108
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
+ G VK+M G SKGFGFV F ++A +A++ +NG + K +YV A K E
Sbjct: 109 GKFGPALXVKVMTDESGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKQIYVGRAXKKVE 168
Query: 240 RTSYLR 245
R + L+
Sbjct: 169 RQTELK 174
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 81/167 (48%), Gaps = 22/167 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S KV + GKSK YGFV Y +ESA AIEK+
Sbjct: 107 FVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNG 166
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ +Y ++ R F NLYVKN D VT E
Sbjct: 167 IQLGSKNVYVGHFIKKSERATNDTKFTNLYVKNFPDSVT------------------ETH 208
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
LK+ FS G I+S+ + N+ ++ F F+ +++ + A A+ LNG
Sbjct: 209 LKELFSPYGEITSMIVKTDNK--NRKFCFINYADSESAKNAMENLNG 253
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 61/86 (70%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLY+KN++D +D+ LK+ F G I+S K+MR ++ SKGFGFVCF+ +EAN+A+ +
Sbjct: 450 NLYIKNLDDAIDDQTLKELFEPYGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEM 509
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
+ + + KPLYV +A+ + +R S L+
Sbjct: 510 HLKIINGKPLYVGLAEKREQRLSRLQ 535
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 33/205 (16%)
Query: 45 VHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYST 103
+H + +T + + +L + L++IF+ G + S +V S KS GY +V Y
Sbjct: 9 MHPSFSTASL--YVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHN 66
Query: 104 QESALNAIEKLYAATVEGM------ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
A A++ L ++G PSLR + N++VKNLD
Sbjct: 67 LADAERALDTLNYTNIKGQPARLMWSHRDPSLR------KSGAGNIFVKNLD-------- 112
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+D L FS G I S K+ G SK +GFV + + + A AI
Sbjct: 113 ----------KSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIE 162
Query: 218 TLNGILFHQKPLYVAIAQTKRERTS 242
+NGI K +YV K ER +
Sbjct: 163 KVNGIQLGSKNVYVGHFIKKSERAT 187
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 18 TPFSLYVGDLDSTDLLR-LCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSK 76
+P LYVG S + A ++++ S + NL ID+ L ++F
Sbjct: 412 SPNILYVGPHQSRARRHAILKAKFDNLNMESKNKHQGVNLYIKNLDDAIDDQTLKELFEP 471
Query: 77 FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
+G I S+KV+ +SKG+GFV ++ QE A A+ +++ + G LY
Sbjct: 472 YGTITSAKVMRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLY 520
>gi|123408784|ref|XP_001303266.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884631|gb|EAX90336.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 461
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 95/187 (50%), Gaps = 13/187 (6%)
Query: 56 PFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY 115
P V+ T ++ L +IF FG+IQ+ + ++G SKG+GF + E A+ A+E L
Sbjct: 189 PLPVDQVKTDED--LRKIFEPFGEIQNPSLKKDENGNSKGFGFCNFKLHEDAVKAVEGL- 245
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLY-VKNLDDDV---TEEILDKNLYVKNINDDVD 171
G E++ +L+ R+ S LY +K + V EE +NLYVK+ + DV
Sbjct: 246 ----NGQEMFGVTLQVNRLM-SKREKELYNIKKHTEKVEKFAEETNGRNLYVKSFSKDVT 300
Query: 172 EIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+ E ++YFS+ G I KI R SKGFGFV + + ++A AI H Y
Sbjct: 301 DKEFQEYFSKFGEIELFKIERVPETKESKGFGFVLYKSKEDAQNAIEMAMLERLHGDLPY 360
Query: 231 VAIAQTK 237
V QTK
Sbjct: 361 VGFFQTK 367
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L +I+ +LH FS FG+I S K+ ++ DGKS+GYG++Q+ E+A A +L
Sbjct: 99 FINGLDESIEVSQLHDAFSNFGEIISCKIPLT-DGKSRGYGYIQFRNPENAEKAKLELAD 157
Query: 117 ATVEGMELYAPSL-RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
A++ G + + R R F N+Y+K L V + D D L
Sbjct: 158 ASINGKPIKIDNYNRKSRRNPDEDFTNVYIKPLP-------------VDQVKTDED---L 201
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F G I + + + G SKGFGF F ++A +A+ LNG L V
Sbjct: 202 RKIFEPFGEIQNPSLKKDENGNSKGFGFCNFKLHEDAVKAVEGLNGQEMFGVTLQVNRLM 261
Query: 236 TKRERTSY 243
+KRE+ Y
Sbjct: 262 SKREKELY 269
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 26/188 (13%)
Query: 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS--KGYGFVQYSTQES 106
MAT T F +L ID L Q F++ G+I + +V + K+ + FV ++T E
Sbjct: 1 MATLTTQIFVGDLPKDIDESFLKQFFAESGEIIPNSGIVLKKHKTLDSSFAFVTFATHEQ 60
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYV 163
A A++ L ++G R RI L+ D T+ I+ +L++
Sbjct: 61 AAKAMKNLNYTKLDG--------RPIRI--------LWC----DTETKAIIKSGRGSLFI 100
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
+++ ++ +L FS G I S KI T+ G S+G+G++ F NP+ A +A L
Sbjct: 101 NGLDESIEVSQLHDAFSNFGEIISCKIPLTD-GKSRGYGYIQFRNPENAEKAKLELADAS 159
Query: 224 FHQKPLYV 231
+ KP+ +
Sbjct: 160 INGKPIKI 167
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV-VSQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ + + + + + + FSKFG+I+ K+ V + +SKG+GFV Y ++E A NAIE
Sbjct: 291 YVKSFSKDVTDKEFQEYFSKFGEIELFKIERVPETKESKGFGFVLYKSKEDAQNAIEMAM 350
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKN 147
+ G Y G Q A+ + VKN
Sbjct: 351 LERLHGDLPY-----VGFFQTKAAHERVKVKN 377
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 157 LDKNLYVKNINDDVDEIELKQYFSQCGII--SSVKIMRTNRGISKGFGFVCFSNPDEANR 214
L ++V ++ D+DE LKQ+F++ G I +S +++ ++ + F FV F+ ++A +
Sbjct: 4 LTTQIFVGDLPKDIDESFLKQFFAESGEIIPNSGIVLKKHKTLDSSFAFVTFATHEQAAK 63
Query: 215 AINTLNGILFHQKPLYVAIAQTK 237
A+ LN +P+ + T+
Sbjct: 64 AMKNLNYTKLDGRPIRILWCDTE 86
>gi|294928940|ref|XP_002779243.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239888268|gb|EER11038.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN+ + VD+ ELK+ F G I+SVK+M ++G+S+GFGFVCFS +EA +A+ +
Sbjct: 84 NLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDM 143
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+ L KPLYV + + + +R L+ Y
Sbjct: 144 HLKLIGGKPLYVGMHEKREQRLERLQQRY 172
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL T+D+ +L ++F FG I S KV+ G S+G+GFV +ST E A A+ ++
Sbjct: 86 YVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHL 145
Query: 117 ATVEGMELY 125
+ G LY
Sbjct: 146 KLIGGKPLY 154
>gi|294879376|ref|XP_002768666.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239871376|gb|EER01384.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN+ + VD+ ELK+ F G I+SVK+M ++G+S+GFGFVCFS +EA +A+ +
Sbjct: 146 NLYVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDM 205
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+ L KPLYV + + + +R L+ Y
Sbjct: 206 HLKLIGGKPLYVGMHEKREQRLERLQQRY 234
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL T+D+ +L ++F FG I S KV+ G S+G+GFV +ST E A A+ ++
Sbjct: 148 YVKNLGETVDDNELKRMFEPFGTITSVKVMTDDKGVSRGFGFVCFSTHEEATKAVTDMHL 207
Query: 117 ATVEGMELY 125
+ G LY
Sbjct: 208 KLIGGKPLY 216
>gi|330843410|ref|XP_003293648.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
gi|325076001|gb|EGC29827.1| hypothetical protein DICPUDRAFT_158538 [Dictyostelium purpureum]
Length = 735
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 22/209 (10%)
Query: 35 LCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK 94
C +A ++ + F N ++ + + SKFG+I+ + + GKSK
Sbjct: 280 FCEPFVAKVERYKVENKVFF----RNADESVTQEMIQEELSKFGEIEICTLKIDSTGKSK 335
Query: 95 GYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE 154
G G V++ E A +KL A + +++ + R VKN + VTE
Sbjct: 336 GLGTVEFKNCEDA----QKLLAVEADSIQINGKPITFDR-----------VKNKIERVTE 380
Query: 155 ---EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDE 211
+ D+ L++ NI++ +++ +K+ FS+ G I KI++ G +KG+GF+ FS E
Sbjct: 381 LRKKTTDQTLFLSNIDESIEKETIKEEFSKHGAIIGCKIVQDESGKNKGYGFITFSEVSE 440
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRER 240
AN+A+ LNG F K + V+++ K ++
Sbjct: 441 ANKALEALNGFTFGNKQITVSLSSNKEQQ 469
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 21/190 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +DN L+ +FS FG+I S KV + G SKGYG+V + T ES+ AIE++
Sbjct: 213 FVKNLEKAVDNAMLYDVFSSFGNILSCKVEY-EKGISKGYGYVHFETSESSGKAIERING 271
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G ++ A +++ N ++ +N D+ VT+E++ + L EIE
Sbjct: 272 TLVLGKPIFCEPFVA-KVERYKVENKVFFRNADESVTQEMIQEEL------SKFGEIE-- 322
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT-LNGILFHQKPLYVAIAQ 235
I ++KI T G SKG G V F N ++A + + + I + KP+ +
Sbjct: 323 --------ICTLKIDST--GKSKGLGTVEFKNCEDAQKLLAVEADSIQINGKPITFDRVK 372
Query: 236 TKRERTSYLR 245
K ER + LR
Sbjct: 373 NKIERVTELR 382
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 89/206 (43%), Gaps = 32/206 (15%)
Query: 48 AMATPTFIP----------FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSK 94
A P F P + +LAS ++ L+++FSK G + + V +D +S
Sbjct: 104 AFVNPQFPPNYQPSQLTSLYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSL 163
Query: 95 GYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE 154
GY +V + A A++ L + + G + RI S D
Sbjct: 164 GYAYVNFYNNHDAERALDTLNYSMIHG--------KPCRIMWS----------YRDPTKR 205
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
+ N++VKN+ VD L FS G I S K+ +GISKG+G+V F + + +
Sbjct: 206 KTNVGNVFVKNLEKAVDNAMLYDVFSSFGNILSCKV-EYEKGISKGYGYVHFETSESSGK 264
Query: 215 AINTLNGILFHQKPLYVAIAQTKRER 240
AI +NG L KP++ K ER
Sbjct: 265 AIERINGTLVLGKPIFCEPFVAKVER 290
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 18/102 (17%)
Query: 161 LYVKNINDDVDEIELKQYFSQCG--IISSVKIMR-TNRGISKGFGFVCFSNPDEANRAIN 217
LYV ++ DV+E+ L + FS+ G I+S+ + R +N S G+ +V F N +A RA++
Sbjct: 122 LYVGDLASDVNEVVLNELFSKVGRNAIASIHVCRDSNTYRSLGYAYVNFYNNHDAERALD 181
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTN 259
TLN + H KP RIM++ + P TN
Sbjct: 182 TLNYSMIHGKP---------------CRIMWSYRDPTKRKTN 208
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 25/155 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + T E+A AIEK+
Sbjct: 18 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNG 76
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ ++ + +E+ F N+Y+KN +D+ +E
Sbjct: 77 MLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMEDE--------------- 121
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVC 205
+L++ FS+ G S+++M + G S+ FGFVC
Sbjct: 122 ---KLREIFSKFGPALSIRVMTDDGGKSRSFGFVC 153
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ G SKG+GFV F + A RAI +
Sbjct: 16 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKM 74
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + +
Sbjct: 75 NGMLLNDRKVFVGRFKSRKEREAEM 99
>gi|443724444|gb|ELU12456.1| hypothetical protein CAPTEDRAFT_172701 [Capitella teleta]
Length = 359
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 135/297 (45%), Gaps = 42/297 (14%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
+ +FS G+++S K++ + G+S GYGFV Y QE A AI L G+ L +
Sbjct: 44 IRSLFSSIGEVESCKLIRDKATGQSLGYGFVNYKRQEDASKAITSL-----NGLRLQNKT 98
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-IISS 187
++ + S +E I NLY+ + ++ +++L+ F+ CG II+S
Sbjct: 99 IKVSVARPS---------------SESIKGANLYISGLPKNMTQVDLENMFNHCGNIITS 143
Query: 188 VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH--QKPLYVAIAQTKRERTSYLR 245
+ N GISKG GF+ F EA RAI LNG + P+ V AQ + L+
Sbjct: 144 RILCDQNTGISKGVGFIRFDQRHEAERAIKMLNGTIPEGATDPITVKFAQHPSSAKNILQ 203
Query: 246 IMYAKQGPGLASTNFPVHPTLY-----QRALQVYQAPG--FRHGGMIPNGFSSPPPSPLF 298
+ P +A++ +PT Y +R L P FR+ P FS S LF
Sbjct: 204 V------PAVAASA-TTNPTQYLAPAARRFLGPIHHPTGRFRYVEASPGSFSCSLFS-LF 255
Query: 299 LTRAGQAAANNLTNGNQRAAANNSMLAV-ASPDERKDILGQ--GLYPLVKKLKVNFD 352
+ ANN GN + + + +P+ +++L Q G + V+ +KV D
Sbjct: 256 PLQQRLVGANNFVAGNAVSGSGYCLFVYNLAPETEENVLWQLFGPFGAVQNVKVVRD 312
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI-SKGFGFVCFSNPDEANRAINTL 219
L+V N+ + +E L Q F G + +VK++R + KGFGFV +N +EA AI+ L
Sbjct: 280 LFVYNLAPETEENVLWQLFGPFGAVQNVKVVRDYATLKCKGFGFVTMTNYEEALMAIHAL 339
Query: 220 NGILFHQKPLYVAIAQTK 237
NGI + L V+ + K
Sbjct: 340 NGIALGDRVLQVSFKKHK 357
Score = 41.2 bits (95), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG-KSKGYGFVQYSTQES 106
A++ + F NLA + L Q+F FG +Q+ KVV K KG+GFV + E
Sbjct: 272 AVSGSGYCLFVYNLAPETEENVLWQLFGPFGAVQNVKVVRDYATLKCKGFGFVTMTNYEE 331
Query: 107 ALNAIEKL 114
AL AI L
Sbjct: 332 ALMAIHAL 339
>gi|348677381|gb|EGZ17198.1| hypothetical protein PHYSODRAFT_354553 [Phytophthora sojae]
Length = 317
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 136/299 (45%), Gaps = 55/299 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++IDN L+ FS FG+I S KV + G SKGYG+V Y T E+A AI K+
Sbjct: 18 FVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHYETAEAATEAIAKIN 77
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G E++ + + + A DD T N YVKNI + +L
Sbjct: 78 GMLIAGTEVFVGHFQKRQDRPDA-----------DDWT------NCYVKNIPTQWTDADL 120
Query: 176 KQYFSQCGIISSVKIMRTNRGI--SKGFGFVCFSNPDEANRAINTLNGILFH-----QKP 228
+ F G + S +M+ N ++GFGFV + + + A++A++ LNG + +
Sbjct: 121 LKEFEPFGKVLSAVVMKDNANPEQNRGFGFVNYEDSEAAHKAVDALNGKSYPAGEGVETE 180
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM-IPN 287
LYV AQ + ER LR + + L + Y A H +P
Sbjct: 181 LYVGKAQKRSERERELRNKFEQ---------------LKMERINKYTANARNHPARDVPP 225
Query: 288 GFSSPPPSPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLVKK 346
PP +P+ A LT ++ LA ASP+ +K+++G+ LYPL+ +
Sbjct: 226 QGVMPPAAPV-----QNAGPEPLT---------SAALAAASPEIQKNMIGERLYPLIHR 270
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINT 218
N++VKN++ +D L FS G I S K+ + G SKG+G+V + + A AI
Sbjct: 16 NIFVKNLDTSIDNKALYDTFSLFGNILSCKVAIDHTTGASKGYGYVHYETAEAATEAIAK 75
Query: 219 LNGILFHQKPLYVAIAQTKRER 240
+NG+L ++V Q +++R
Sbjct: 76 INGMLIAGTEVFVGHFQKRQDR 97
>gi|13365527|dbj|BAB39137.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ +IDN L+ S FG+I S KVV ++G SKGYGFV + TQE+A AIE
Sbjct: 18 FIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIE---- 72
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T+ GM L + G + + + + + + N+Y+KN ++D+D +LK
Sbjct: 73 -TMNGMLLNDRKVFVGHFKSRK-------ERMAEMGAKAMEFTNVYIKNFSEDIDREKLK 124
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVC 205
FS+ G SV +M G S+GFGFVC
Sbjct: 125 SIFSEFGKTLSVCVMTDESGCSRGFGFVC 153
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN+++ +D L S G I S K++ G SKG+GFV F + ANRAI T+
Sbjct: 16 NIFIKNMDESIDNKALYDTSSAFGNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETM 74
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + + ++V ++++ER + +
Sbjct: 75 NGMLLNDRKVFVGHFKSRKERMAEM 99
>gi|224009309|ref|XP_002293613.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971013|gb|EED89349.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 189
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 68 WK-LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126
W+ L GD+ + ++ + DG+SKG G V+YS+ E A A+E+L + + G +++
Sbjct: 13 WRDLKDHMKACGDVLRADIMQTHDGRSKGCGIVEYSSPEEAARAVEELNNSELSGRQIF- 71
Query: 127 PSLRAGRIQESAS--------FNNLYVKN---LDDDVTEEILDKNLYVKNINDDVDEIEL 175
+R R Q + S FNN N + EE L+V N++ + EL
Sbjct: 72 --VREDREQTTGSNNRHGGGGFNNQRSHNTSYMQGSPAEEGC--QLFVGNLSWETGWREL 127
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
K +F QCG + ++ N G +GFG V F + +A AI LNG+ F +PL V +
Sbjct: 128 KDHFRQCGEVDRAEVAEGNDGRKRGFGLVRFHSAKDAQAAIRKLNGVDFMGRPLDVRV 185
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+YV N++ +LK + CG + IM+T+ G SKG G V +S+P+EA RA+ LN
Sbjct: 2 VYVGNLSWSTGWRDLKDHMKACGDVLRADIMQTHDGRSKGCGIVEYSSPEEAARAVEELN 61
Query: 221 GILFHQKPLYVAIAQTKRERTS 242
+ ++V + RE+T+
Sbjct: 62 NSELSGRQIFV---REDREQTT 80
>gi|403355351|gb|EJY77251.1| Polyadenylate-binding protein, cytoplasmic and nuclear [Oxytricha
trifallax]
Length = 712
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 53/234 (22%)
Query: 34 RLCSALIASIDV--------HSAMATPTFIPFTVNL---ASTIDNWKLHQI---FSKFGD 79
+ C L SI + H A + F P L NW + F +FG+
Sbjct: 41 KCCRVLRYSIKLAKSQQFQDHHASSAAKFFPTDSQLFVKGFKPLNWTHEDLTMNFKQFGE 100
Query: 80 IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT-----VEGMELYAPSL---RA 131
+ S+KV + + +SKGYG+VQ+S + +AL A+E + T V ++LY SL ++
Sbjct: 101 VVSAKVSIDANHQSKGYGYVQFSQKSNALKAMEMMNGKTFGNEIVLSVKLYNSSLVKEKS 160
Query: 132 GRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIM 191
++Q NNLYVKN T + D+ L+ G + + +IM
Sbjct: 161 KKVQ-----NNLYVKNFP---TLDFTDQELHY-------------------GPLINAQIM 193
Query: 192 RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
+ ++G +KGFGFVCF + ++A +A+ ++ +YV AQ+K ER S L+
Sbjct: 194 KDSQGNTKGFGFVCFQSAEDAQKALQDISSTT----QIYVTEAQSKEERMSELQ 243
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 6/200 (3%)
Query: 44 DVHSAMATPTFIP----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGF 98
D S P+F P F NL +D+ +L ++F G+++ +V+ + G+S+G+GF
Sbjct: 72 DTFSDGDGPSFSPDLKLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGF 131
Query: 99 VQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD 158
V S+ E A A ++ ++G L S ESA +
Sbjct: 132 VTMSSVEEAEAAAQQFNGYELDGRALRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSE 191
Query: 159 KNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
++V N+ VD + LK F + G ++ + I G S+GFGFV FS+PDE N AI
Sbjct: 192 NRVHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQ 251
Query: 218 TLNGILFHQKPLYVAIAQTK 237
+LNG+ + + + V++A +K
Sbjct: 252 SLNGVDLNGRAIRVSLADSK 271
>gi|18677184|gb|AAL78224.1|AF345796_1 hypothetical protein Hgg-30 [Heterodera glycines]
Length = 219
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 58/92 (63%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN++D +++ L+ F G I+S K+M G SKGFGFVCF DEA +A+ +
Sbjct: 50 NLYVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEM 109
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
N + KPLYVA+AQ K +R + L Y ++
Sbjct: 110 NNKIIENKPLYVALAQRKEDRKAQLASQYMQR 141
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL TI++ L F +G+I S+KV+ + G+SKG+GFV + + A A+ ++
Sbjct: 52 YVKNLHDTINDETLRSNFESYGNITSAKVMCDEHGRSKGFGFVCFEKADEATKAVVEMNN 111
Query: 117 ATVEGMELY 125
+E LY
Sbjct: 112 KIIENKPLY 120
>gi|396082305|gb|AFN83915.1| polyadenylate-binding protein 2 [Encephalitozoon romaleae SJ-2008]
Length = 415
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 32/208 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEK--- 113
F NL + + L FS FG+I S KV + GKSKGYGFVQ+ +++A I+
Sbjct: 14 FVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKKAAKKVIKNFNN 73
Query: 114 ----LYAATVEGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+ +ELY P ++ G ++ S F N ++KN D TE+
Sbjct: 74 LNGLMLGGNKIAVELYNPDMKKGESKKVSTMFTNCFIKNFPVDTTEK------------- 120
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-- 226
EL + + G ++S+ + G KGF F F + + A AIN L+G
Sbjct: 121 -----ELLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHESALNAINNLHGAFPFDSS 175
Query: 227 ----KPLYVAIAQTKRERTSYLRIMYAK 250
+P Y+ Q K ER LR M+ +
Sbjct: 176 KDGGEPFYIQKGQRKEERAEELRKMFEQ 203
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 107/249 (42%), Gaps = 23/249 (9%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQES 106
S M T FI N +L ++ ++G + S + DGK KG+ F + + ES
Sbjct: 102 STMFTNCFIK---NFPVDTTEKELLELLVRYGKVTSLYFPIKDDGKPKGFAFANFESHES 158
Query: 107 ALNAIEKLYAA-----TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNL 161
ALNAI L+ A + +G E + + R +E A + L + + KNL
Sbjct: 159 ALNAINNLHGAFPFDSSKDGGEPFYIQ-KGQRKEERAEELRKMFEQLS--MQGQSYRKNL 215
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
Y+ NI + EL F + G I+S+ + K + ++C+S P+EA+ A+ N
Sbjct: 216 YITNIPEGFGAEELNNIFKEFGSITSMSVGIDGANSQKQYAYICYSTPEEASIAVERGNE 275
Query: 222 ILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQV----YQAP 277
I L V+ + K ER M K+ GL P P +Y + + Y+
Sbjct: 276 IYLDGNRLQVSYFKNKLER------MKEKEFGGLGYK--PGIPYMYNQGVNFTSNGYKRE 327
Query: 278 GFRHGGMIP 286
R G M P
Sbjct: 328 RSRSGTMRP 336
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI--- 216
N++VKN+ + +L FS G I S K+ T +G SKG+GFV F A + I
Sbjct: 12 NIFVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKKAAKKVIKNF 71
Query: 217 NTLNGILFHQKPLYVAI--AQTKRERTSYLRIMYAKQGPGLASTNFPVHPT 265
N LNG++ + V + K+ + + M+ NFPV T
Sbjct: 72 NNLNGLMLGGNKIAVELYNPDMKKGESKKVSTMFT----NCFIKNFPVDTT 118
>gi|296238718|ref|XP_002764276.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 188
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN++D +D+ +L++ FS G+I SVK+M T SKGFGFVCFS P+ A +AI +
Sbjct: 19 NLYVKNLDDSIDDDKLRKEFSPYGMIISVKVM-TEGSHSKGFGFVCFSYPEGAIKAITEM 77
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
NG + K LY+A+AQ K E+ + L Y +
Sbjct: 78 NGCIVGTKLLYMALAQCKEEQRAILTNQYMQH 109
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +ID+ KL + FS +G I S KV+ ++ SKG+GFV +S E A+ AI ++
Sbjct: 21 YVKNLDDSIDDDKLRKEFSPYGMIISVKVM-TEGSHSKGFGFVCFSYPEGAIKAITEMNG 79
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT 153
V G +L +L + ++ A N Y+++L +T
Sbjct: 80 CIV-GTKLLYMALAQCKEEQRAILTNQYMQHLSTIMT 115
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 117/257 (45%), Gaps = 55/257 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-- 114
+ NL ++D+ KL ++F+KFG++ S+KV + S G+ +V Y+T E+A A+E+L
Sbjct: 187 YVKNLDPSVDDEKLKEVFAKFGEVTSAKVRDLGNNSSVGFAYVAYATHEAAAKAVEELDE 246
Query: 115 YAATV--EGMEL-------------YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK 159
++T+ EGM+L +R R Q+ + NLYVKN DD VT E
Sbjct: 247 KSSTLAKEGMKLSVCRFRSREERQRERERVRRERQQQHGKYPNLYVKNFDDTVTSE---- 302
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
+LK+ F + G SV +M +S+ FGFV F A++AI
Sbjct: 303 --------------KLKELFERFGETVSVSVMMDKATQVSRCFGFVSFKEQSAASQAIQE 348
Query: 219 LNG-ILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAP 277
L+G +PL+V A K R L + KQ P + Q +
Sbjct: 349 LHGSTALGPRPLFVTYALRKDARRQTLEDIRNKQ------------PRMRQPPMG----- 391
Query: 278 GFRHGGMIPN-GFSSPP 293
G G M P GF +PP
Sbjct: 392 GLMSGMMAPQLGFMNPP 408
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 25/164 (15%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L ST+D + L ++FSKFG + + + + G+S+GY + Y +ESA+ A+ +L +++
Sbjct: 103 LPSTVDTYALKEMFSKFGRLTAIGLATDEKGESRGYARISYEKEESAVEAVRELNGVSID 162
Query: 121 G----MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+E Y P R ++++ + NLYVKNLD V +E +LK
Sbjct: 163 DCSITVERYQPHHREEQLKQ---YTNLYVKNLDPSVDDE------------------KLK 201
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+ F++ G ++S K+ S GF +V ++ + A +A+ L+
Sbjct: 202 EVFAKFGEVTSAKVRDLGNNSSVGFAYVAYATHEAAAKAVEELD 245
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 52 PTFIP--FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESAL 108
PT P + L ++ KL+ F + G + S +V V + KS GYG+V + A
Sbjct: 5 PTASPSIWVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAE 64
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
A+++ G++L +R +IQ S V N+ VK +
Sbjct: 65 KALDQ------AGVKLGTKHIRIAKIQRDPSKRRSGVTNI-------------VVKKLPS 105
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
VD LK+ FS+ G ++++ + +G S+G+ + + + A A+ LNG+
Sbjct: 106 TVDTYALKEMFSKFGRLTAIGLATDEKGESRGYARISYEKEESAVEAVRELNGV 159
>gi|320168681|gb|EFW45580.1| polyadenylate-binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 814
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 100/193 (51%), Gaps = 21/193 (10%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
N+ +D+ +L ++F+ FG I S ++ + GKSKGYGFV YST E+A A+ + T
Sbjct: 254 NMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTTEAASKAMAATHGQTF 313
Query: 120 EGME------LYAPS-----LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+ + ++ S +A R+ E V++ + KNL ++N+ +
Sbjct: 314 DRLTRPLDVTIFTSSEHDGMFKANRVAE--------VRHHAEVARIAQFRKNLCIRNLGE 365
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF--HQ 226
+DE +L+ F+ G I + ++R + G S+ GFV F+ +EA++A+ ++G Q
Sbjct: 366 SIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPSPGTQ 425
Query: 227 KPLYVAIAQTKRE 239
P+ V ++ R+
Sbjct: 426 MPMTVTLSHRARD 438
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 11/196 (5%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +ID +L +F+ FG I++ V+ G+S+ GFV ++T E A A+ +++
Sbjct: 362 NLGESIDEKQLRALFAPFGKIRTCHVLRDDMGRSRKVGFVDFATMEEASKAVAEMHGKPS 421
Query: 120 EGMEL---YAPSLRAGRIQE----SASFNNLYVKNLDDDVTEEILDKNL-YVKNINDDVD 171
G ++ S RA Q+ +AS + + D +I + L YVKNI+ V+
Sbjct: 422 PGTQMPMTVTLSHRARDAQDPPAPNASGKDSSTDEAEPDAEGQIRPRKLIYVKNIDPAVE 481
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG--ILFHQKPL 229
+L++ F Q G I S IMR + GISKG G V + + D A A+ ++G + +PL
Sbjct: 482 LEDLQRVFGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAVAAMDGKRLTATGQPL 541
Query: 230 YVAIAQTKRERTSYLR 245
V++ R+R S +R
Sbjct: 542 RVSLPD-PRDRFSPIR 556
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 18/195 (9%)
Query: 43 IDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYS 102
+ VH P+ I NL + L + FG + + +V + + G V
Sbjct: 144 VQVHRLPERPSLI--VRNLPADASEESLAALCRPFGRVGVA-TIVQEAPEDAPMGVVCLD 200
Query: 103 TQESALNAIEKLYAATVEGMELYA--PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN 160
E AL AI L+ + + +L P+ RA R ESA L E L
Sbjct: 201 RFEDALTAIRALHGSKLGSNQLSVTFPATRAERECESAVAQRL-----------ERLQGK 249
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
L +KN++ D+D+ +L++ F+ G I S+ IMR G SKG+GFV +S + A++A+ +
Sbjct: 250 LVIKNMDVDMDDDQLEELFAPFGTIISLHIMRDETGKSKGYGFVAYSTTEAASKAMAATH 309
Query: 221 GILFHQ--KPLYVAI 233
G F + +PL V I
Sbjct: 310 GQTFDRLTRPLDVTI 324
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 84/173 (48%), Gaps = 31/173 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + KL +F+ G I ++ +V +D + GFV + Q +++ E+ +
Sbjct: 638 YVANLPANYNYVKLMALFADCGKIVTT--IVPRDFST--VGFVCFD-QPASVELAERFHG 692
Query: 117 ATVEGMELYA--------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+EG ELY P+ E A ++ LY+ N+D + +E+
Sbjct: 693 HVLEGEELYVSRFPLQTDPAPPPHATSEVAPYHILYLTNVDFEASED------------- 739
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
++++ + G +++V + R G S+GF FV F+N ++A++A + L+G
Sbjct: 740 -----KVRELCAPYGTLTAVHVRRRADGTSRGFAFVHFTNVEDASKAKDALSG 787
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 35/174 (20%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +I+ L +FS FG I SS+ + +Q + V + ++E+ NAI + A V
Sbjct: 564 NLEQSINLSALRDLFSPFGCILSSRTIETQPRAA----LVDFLSEEACQNAIANINGAIV 619
Query: 120 EGMELYA-PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
G+ + A P +R R +++YV N+ + + ++L
Sbjct: 620 NGLPVTASPYVRKDR-------------------------RSVYVANLPANYNYVKLMAL 654
Query: 179 FSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
F+ CG I + + R + GFVCF P A +G + + LYV+
Sbjct: 655 FADCGKIVTTIVPRDFSTV----GFVCFDQPASVELA-ERFHGHVLEGEELYVS 703
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 73/181 (40%), Gaps = 32/181 (17%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +D+ +L IF +FG + KV S G G V Y + + A A+ + V
Sbjct: 85 NLDPRMDDQQLRDIFGEFGTMTLCKV-----ASSIGVGLVTYESFDDAHAAMTQ-----V 134
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
GM L ++ R+ E S L V+NL D +EE L L + F
Sbjct: 135 NGMYLNGQQVQVHRLPERPS---LIVRNLPADASEESL---------------AALCRPF 176
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
+ G+ + V+ + G VC ++A AI L+G L V T+ E
Sbjct: 177 GRVGVATIVQEAPED----APMGVVCLDRFEDALTAIRALHGSKLGSNQLSVTFPATRAE 232
Query: 240 R 240
R
Sbjct: 233 R 233
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 28/197 (14%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI 111
P + + N+ ++ L ++F +FG I SS ++ G SKG G V Y ++A A+
Sbjct: 467 PRKLIYVKNIDPAVELEDLQRVFGQFGAIVSSNIMRDDAGISKGIGHVDYLHADAARAAV 526
Query: 112 E----KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
K AT + + + P R D I +L +KN+
Sbjct: 527 AAMDGKRLTATGQPLRVSLPDPR--------------------DRFSPIRYASLIIKNLE 566
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
++ L+ FS G I S + + T V F + + AI +NG + +
Sbjct: 567 QSINLSALRDLFSPFGCILSSRTIETQ----PRAALVDFLSEEACQNAIANINGAIVNGL 622
Query: 228 PLYVAIAQTKRERTSYL 244
P+ + K R+ Y+
Sbjct: 623 PVTASPYVRKDRRSVYV 639
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 32/170 (18%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
L T+D + L ++FSKFG + + + + G+S+GY + + +ESA+ A++++
Sbjct: 101 KLPKTVDTYALKELFSKFGRLTAIGLACDEKGESRGYARISFEREESAVEAVKEM----- 155
Query: 120 EGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+GME+ ++ R Q F NLYVKNLD VT+E
Sbjct: 156 DGMEMDGQAIVVERYQAQHRDELLKQFTNLYVKNLDPAVTDE------------------ 197
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISK--GFGFVCFSNPDEANRAINTLNG 221
+L+ +F++ G +SS K+ R G+ G G+V F ++A RA+ LNG
Sbjct: 198 KLRAFFARYGAVSSAKV-RDLGGVQSEVGLGYVAFEKHEDAARAVEELNG 246
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 38/208 (18%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK-GYGFVQYSTQESALNAIEKLY 115
+ NL + + KL F+++G + S+KV +S+ G G+V + E A A+E+L
Sbjct: 186 YVKNLDPAVTDEKLRAFFARYGAVSSAKVRDLGGVQSEVGLGYVAFEKHEDAARAVEELN 245
Query: 116 AATVEGMELYAPSLRAGRIQES------------------ASFNNLYVKNLDDDVTEEIL 157
E + +L R + + + NLYVK DD VT E L
Sbjct: 246 GKECE-IAKAESTLDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERL 304
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+ EL Q + + +S +M G+S+ FGFV + + A++AI
Sbjct: 305 E---------------ELFQRYGET--VSVTVMMDKETGMSRCFGFVSMKDQNAASQAIQ 347
Query: 218 TLNGILF-HQKPLYVAIAQTKRERTSYL 244
LNG F +PL+V A K R L
Sbjct: 348 ELNGSTFLCPRPLFVTYALRKDARRQNL 375
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
L + +L+ F + G + S +V V S KS GYG+V + A A+++
Sbjct: 15 LDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQA----- 69
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G +L + LR +IQ S V N+ VK + VD LK+ F
Sbjct: 70 -GTKLGSRYLRIAKIQRDPSKRRSGVNNI-------------LVKKLPKTVDTYALKELF 115
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
S+ G ++++ + +G S+G+ + F + A A+ ++G+ + + V Q +
Sbjct: 116 SKFGRLTAIGLACDEKGESRGYARISFEREESAVEAVKEMDGMEMDGQAIVVERYQAQ 173
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 136/326 (41%), Gaps = 58/326 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-- 114
+ NL ++ + KL ++FS +G++ S+KV S G+ +V Y+T E+A+ A+E+L
Sbjct: 187 YVKNLDPSVGDEKLKEVFSAYGEVTSAKVRDLGGKMSVGFAYVAYATHEAAVKAVEELDD 246
Query: 115 --YAATVEGMEL------YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
EGM+L + R + LY K NLYVKN
Sbjct: 247 KENPLAKEGMKLSVCRFRSREERQRERERLRRERQQLYSKY-----------PNLYVKNF 295
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNG-ILF 224
+D V LK+ F + G SV +M +S+ FGFV F + A+RAI L+G
Sbjct: 296 DDTVTSERLKELFERFGETVSVSVMVDKATKVSRCFGFVSFKEQNSASRAIQELHGSTAL 355
Query: 225 HQKPLYVAIAQTKRERTSYLRIMYAKQ----------------GPGLASTNFPVH----P 264
+PL+V A K R L M KQ GP L N P P
Sbjct: 356 GPRPLFVTYALRKDARRQTLEDMRNKQPRMRQTPMGGLMGGMMGPQLGFMNPPAMFNGVP 415
Query: 265 TLYQRALQVYQAPGFRHGGMIPNGFSSPPPSPLFLTRAGQAAANNLTNGNQRAAAN---- 320
+ R + A G G M P G P+P+ RA A
Sbjct: 416 FMNTRMPMMPNAMGM-GGPMRPLG-----PTPMNQVRARPAPQRPPMQPMMPPQQQPPVP 469
Query: 321 -----NSMLAVASPDERKDILGQGLY 341
++MLA +P+++K++LG+ LY
Sbjct: 470 QGQNLSTMLANLTPEQQKNVLGERLY 495
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 25/164 (15%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L T+D + L ++FSK+G + + + ++ G+S+GY + Y +ESA+ A++ + T++
Sbjct: 103 LPPTVDTYALKEMFSKYGRLTAIGLATNEKGESRGYARISYEKEESAIEAVQGVNGMTID 162
Query: 121 G----MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+E Y P R +++ + NLYVKNLD V +E +LK
Sbjct: 163 DCPITVERYQPHHREEQLK---LYTNLYVKNLDPSVGDE------------------KLK 201
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+ FS G ++S K+ +S GF +V ++ + A +A+ L+
Sbjct: 202 EVFSAYGEVTSAKVRDLGGKMSVGFAYVAYATHEAAVKAVEELD 245
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
L ++ KL+ F + G + S +V V + KS GYG+V + A A+++
Sbjct: 16 LDPNLNEQKLYDHFVRVGPVASVRVCVDTVTQKSLGYGYVNFQNPADAEKALDQ------ 69
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G++L + +R RIQ S V N+ VK + VD LK+ F
Sbjct: 70 AGVKLGSKHIRIARIQRDPSKRRSGVTNI-------------VVKKLPPTVDTYALKEMF 116
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
S+ G ++++ + +G S+G+ + + + A A+ +NG+ P+ V
Sbjct: 117 SKYGRLTAIGLATNEKGESRGYARISYEKEESAIEAVQGVNGMTIDDCPITV 168
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 96/214 (44%), Gaps = 37/214 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-- 114
+ NL ++D+ KL ++FS FG++ S+KV + G+G+V Y+T E+A A+E+L
Sbjct: 187 YVKNLDPSVDDEKLKEVFSPFGEVTSAKVRDLAGRPTVGFGYVAYATHEAAAKAVEELDD 246
Query: 115 --YAATVEGMELYAPSLRAGRI-------------QESASFNNLYVKNLDDDVTEEILDK 159
EGM+L R+ Q+ + + NLYVKN DD VT E
Sbjct: 247 KESPLAKEGMKLSVCRFRSREERKRERERLRRERQQQHSKYPNLYVKNFDDTVTSE---- 302
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
LK F G SV +M +S+ FGFV F A +AI
Sbjct: 303 --------------RLKALFDPFGETVSVSVMMDKATKVSRCFGFVSFKEQSSAAQAIQE 348
Query: 219 LNG-ILFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
L+G +PL+V+ A K R L M KQ
Sbjct: 349 LHGSTALGPRPLFVSYALRKDARRQTLEDMRNKQ 382
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 86/164 (52%), Gaps = 25/164 (15%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L T+D + L ++FSK+G + + + + G+S+GY + Y +ESA++A+ +L +++
Sbjct: 103 LPPTVDTYALKEMFSKYGRLTAIGLATDEKGESRGYARISYEKEESAVDAVRELNGVSID 162
Query: 121 G----MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+E Y P R ++++ + NLYVKNLD V +E +LK
Sbjct: 163 DCAITVERYQPHHREEQLKQ---YTNLYVKNLDPSVDDE------------------KLK 201
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
+ FS G ++S K+ + GFG+V ++ + A +A+ L+
Sbjct: 202 EVFSPFGEVTSAKVRDLAGRPTVGFGYVAYATHEAAAKAVEELD 245
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 22/176 (12%)
Query: 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQES 106
A A+P+ + L ++ KL+ F + G + S +V V S KS GYG+V +
Sbjct: 5 AAASPSI--WVGGLDPNLNEQKLYDHFVRVGPVASVRVCVDSVTQKSLGYGYVNFQNPAD 62
Query: 107 ALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
A A+++ G++L +R +IQ S V N+ VK +
Sbjct: 63 AEKALDQ------AGVKLGTKHIRIAKIQRDPSKRRSGVTNI-------------IVKKL 103
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
VD LK+ FS+ G ++++ + +G S+G+ + + + A A+ LNG+
Sbjct: 104 PPTVDTYALKEMFSKYGRLTAIGLATDEKGESRGYARISYEKEESAVDAVRELNGV 159
>gi|401827787|ref|XP_003888186.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
gi|392999386|gb|AFM99205.1| polyadenylate-binding protein [Encephalitozoon hellem ATCC 50504]
Length = 500
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 92/207 (44%), Gaps = 30/207 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIE---K 113
F NL + + L FS FG+I S KV + GKSKGYGFVQ+ + SA I+
Sbjct: 99 FVKNLPESFTSKDLDDAFSMFGEIVSCKVATTPQGKSKGYGFVQFKEKRSAKKVIKNFNN 158
Query: 114 LYAATVEG----MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
L + G +ELY P ++ G ES + ++ N ++KN
Sbjct: 159 LNGLMLGGNKIVVELYNPEMKKG---ESKKVSTMFT--------------NCFIKNFPGS 201
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL-FHQ-- 226
V E EL + G ++S+ + G KGF F F + A AIN L+G F
Sbjct: 202 VGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHESALNAINGLHGTFPFDNGK 261
Query: 227 ---KPLYVAIAQTKRERTSYLRIMYAK 250
+P Y+ Q + ER LR M+ +
Sbjct: 262 DGGEPFYIQKGQKREERAEVLRKMFEQ 288
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 25/252 (9%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQES 106
S M T FI N ++ +L + K+G + S DGK KG+ F + T ES
Sbjct: 187 STMFTNCFIK---NFPGSVGEKELLDLLEKYGKVTSLCFPTKDDGKPKGFAFANFETHES 243
Query: 107 ALNAIEKLYAA-----TVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNL 161
ALNAI L+ +G E + R + + ++ + + + KNL
Sbjct: 244 ALNAINGLHGTFPFDNGKDGGEPFYIQKGQKREERAEVLRKMFEQ---LSMQGQNYKKNL 300
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
Y+ NI + EL F + G I+S+ + K + ++C+S P+EA+ A+ N
Sbjct: 301 YITNIPEGFGAEELSNIFKEFGSITSMSVGVDGANNQKQYAYICYSTPEEASIAVERGNE 360
Query: 222 ILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF-- 279
I L VA + K ER M K+ GL P P +Y + + + GF
Sbjct: 361 IYLDGNRLQVAYFKNKLER------MKEKEFGGLGYK--PGIPYMYNQGAS-FASNGFKR 411
Query: 280 ---RHGGMIPNG 288
R G + P G
Sbjct: 412 ERSRSGSVKPYG 423
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 31/175 (17%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK-GYGFVQYSTQESALNAIEKLYAATVEGM 122
TID+ L +IFS G I + K++ + G+S + FV + +E A A+ + +
Sbjct: 25 TIDS-DLFRIFSNVGKILNIKLI--KRGESAPSFAFVTFENEEDAEKAVREY-----KHY 76
Query: 123 ELYAPSLRAGRIQESA-SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQ 181
EL+ +R R E N++VKNL + T + LD FS
Sbjct: 77 ELHDRQIRVMRKDERPPETGNIFVKNLPESFTSKDLD------------------DAFSM 118
Query: 182 CGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI---NTLNGILFHQKPLYVAI 233
G I S K+ T +G SKG+GFV F A + I N LNG++ + V +
Sbjct: 119 FGEIVSCKVATTPQGKSKGYGFVQFKEKRSAKKVIKNFNNLNGLMLGGNKIVVEL 173
>gi|384500300|gb|EIE90791.1| hypothetical protein RO3G_15502 [Rhizopus delemar RA 99-880]
Length = 567
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 8/183 (4%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL +ID+ +L ++ FG + KV+ ++G K VQY ++ + ++ L +
Sbjct: 94 NLPQSIDHHQLFELCRPFGSLHICKVI-KEEGNIKKRALVQYFRKQDSDSSQLNLNNKAI 152
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIELKQY 178
EG +++ + S + Y + + + T +D NLYVKN++ + EL
Sbjct: 153 EGS-----TIQVAILMPSNLTHQRYSVSQEKNETSGYIDYMNLYVKNLDPTIGNTELFSL 207
Query: 179 FSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
F + G I S ++M G+SKG+GFV +S P+EA A+N +NGIL K + VA + K
Sbjct: 208 FRKFGHIVSARVMSNPATGLSKGYGFVSYSKPEEAALALNEMNGILVRSKAMIVAYHEPK 267
Query: 238 RER 240
+ R
Sbjct: 268 KPR 270
>gi|62087504|dbj|BAD92199.1| PABPC4 protein variant [Homo sapiens]
Length = 358
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
D+ +L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLY
Sbjct: 4 DDEKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 62
Query: 231 VAIAQTKRERTSYLRIMYAKQGPGL 255
VA+AQ K ER ++L Y ++ G+
Sbjct: 63 VALAQRKEERKAHLTNQYMQRVAGM 87
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
T D+ KL + FS FG I S+KV++ +DG+SKG+GFV +S+ E A A+ ++ V
Sbjct: 2 TSDDEKLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKP 60
Query: 124 LYAPSLRAGRIQESASFNNLYVKNL 148
LY +L + + A N Y++ +
Sbjct: 61 LYV-ALAQRKEERKAHLTNQYMQRV 84
>gi|66821129|ref|XP_644081.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
gi|60472201|gb|EAL70154.1| RNA recognition motif-containing protein RRM [Dictyostelium
discoideum AX4]
Length = 904
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F +L ++ L +FSK+G + SSKV++ G S GYGFV++S+ + + AIE+L
Sbjct: 112 FVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEELDG 171
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +L +NLY ++ + NL++K + DV + +L+
Sbjct: 172 YQYQNKKLLC------------RLSNLYT-----NLNSKYPSNNLFIKPLPYDVTDDQLR 214
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK---PLYVAI 233
+ F G I K+M + G SK GFV FS+ +A++AI+ +NG+ ++ PL V
Sbjct: 215 KLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKY 274
Query: 234 AQTKRERTS 242
A T++++ S
Sbjct: 275 ADTEQQKIS 283
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VK++ + ++ +L+ FS+ G + S K+M +G S G+GFV FS+P E+ AI L
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 220 NGILFHQKPLYVAIA 234
+G + K L ++
Sbjct: 170 DGYQYQNKKLLCRLS 184
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKL 114
F +L +D+ L Q+FS+FG +QS +V+ +D G++KGYGFV++ + AL +++
Sbjct: 772 FVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEM 830
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAI 216
D NL+V ++ VD+ L Q FSQ G + SV+++ + G +KG+GFV F DEA +
Sbjct: 768 DTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQ 827
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTS 242
+NG K L V + K S
Sbjct: 828 KEMNGFRIGSKFLKVKLKNEKESMNS 853
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 19/219 (8%)
Query: 37 SALIASIDVHSAMATPTFIPFTVNLASTIDN--WKLHQIFSK--FGDIQSSKVVVSQDGK 92
SA A +H+A+ TP + + +DN + SK G+ + K S +
Sbjct: 240 SAKAAVAALHNALVTPVGVELDSTAETPVDNEAGADSETSSKQESGEASNKKQTASGEAS 299
Query: 93 SKGYGFVQYSTQESALN---AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLD 149
G S +ESA N + +K +A V+ LY RA + E + +K+
Sbjct: 300 KDSSG---TSNEESAQNEDGSADKNVSADVQPNRLYVS--RAQKKNE----RQVVLKSQH 350
Query: 150 DDVTE---EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCF 206
+ V E NLYVKN+ D ++E +L+ F G +SSV I G+S+GFGFV F
Sbjct: 351 EAVKESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSF 410
Query: 207 SNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
+PDEA +AI ++ L KPLYV + + K +R L+
Sbjct: 411 LSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQ 449
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 82/170 (48%), Gaps = 23/170 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S K+ +GKS GYGF+ + +SA AI +L
Sbjct: 103 FVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNG 162
Query: 117 ATVEGMELYAPSL--RAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
A + +Y +A R E +F N+YVK++ TE++L K
Sbjct: 163 AVLGDRPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYK-------------- 208
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
F G ISS+ + ++G + FGFV F NPD A A+ L+ L
Sbjct: 209 ----IFGVYGKISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNAL 252
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 98/237 (41%), Gaps = 60/237 (25%)
Query: 9 NNNDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNW 68
NNN ++ SLYVGDLD+ DV M
Sbjct: 4 NNN---VVPVSASLYVGDLDA--------------DVTETM------------------- 27
Query: 69 KLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
L++IF+ + S V + +D +S GY +V Y++ A A++ L + G
Sbjct: 28 -LYEIFNSVAVV--SSVRICRDALTRRSLGYAYVNYNSVADAERALDTLNFTCIRG---- 80
Query: 126 APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGII 185
R RI L D + D N++VKN++ +D L FS G I
Sbjct: 81 ----RPCRIMWC----------LRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
S KI G S G+GF+ F + D A AI+ LNG + +P+YV Q K ER S
Sbjct: 127 MSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFS 183
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 111/211 (52%), Gaps = 14/211 (6%)
Query: 44 DVHSAMATPTFIP----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGF 98
DV S P+F P F NL +D+ L +F + G+++ +V+ + G+S+G+GF
Sbjct: 76 DVLSDEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSRGFGF 135
Query: 99 VQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASF----NNLYVKNLDDDVTE 154
V ST E A ++ +EG +L S +E+++F +N +N +
Sbjct: 136 VTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSNFRGENSNFRGENTNFRGPR 195
Query: 155 EILDKN----LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNP 209
+ N +YV N++ VD++ L+ FS+ G ++ +++ G S+GFGFV +++
Sbjct: 196 GGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSA 255
Query: 210 DEANRAINTLNGILFHQKPLYVAIAQTKRER 240
+E NRAI +L+G+ + + + V +A+ + R
Sbjct: 256 EEVNRAIESLDGVDLNGRSIRVTMAEARPRR 286
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 6/181 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL +++ + KL ++F FG I SKV G SKGYGFV+Y SA AI ++
Sbjct: 207 YVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINRMN 266
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLY-VKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
V+G L +R + S S ++ V +EEI +LYV+N++ + + E
Sbjct: 267 GRLVDGKIL---EVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSSLYVRNLSLSMTKEE 323
Query: 175 LKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L Q+F G I K+ R G++KG+GFV +SN EA AI LNG L K + V +
Sbjct: 324 LLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKMEVRV 383
Query: 234 A 234
+
Sbjct: 384 S 384
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 17/201 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F + ST++ +L ++F FG I +V Q GYG +++ SA AI+ +
Sbjct: 608 FVGRIPSTVNGDQLVELFRPFGQIVQVRVFQHQ-----GYGMFRFNDPFSAAAAIDHMNG 662
Query: 117 ATVEGMELYAPSLRAGRIQE----SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ G L +R + SA+ ++L ++ + + +I NLYV ++ +
Sbjct: 663 YQIGGSALV---VRVAGLPNPGDFSAATDDLKLQ-MPGNEGRQIDMANLYVCHLPLYITT 718
Query: 173 IELKQYFSQCGIISSVKIMRTNR--GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+L + F CG I+ +++ T+R GISKGFGFV F++ A A+ +NG L
Sbjct: 719 EKLIEIFLPCGQITQARVV-TDRYTGISKGFGFVRFADTYSAAVALTHMNGYPLEGHILE 777
Query: 231 VAIAQTK-RERTSYLRIMYAK 250
V IA + SY+ +Y++
Sbjct: 778 VRIAGVHPSDMGSYMTQLYSQ 798
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 17/178 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ---DGKSKGYGFVQYSTQESALNAIEK 113
+ N+ ++ID KL +IF FG I ++V Q GK + YGFV+++ + A AI
Sbjct: 413 YVCNIPTSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGR-YGFVKFADSQCAAEAITL 471
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+ A VEG L +R + SAS ++ + + EI +Y+ N+ +
Sbjct: 472 MDGALVEGETLV---VRVAGLSSSASSPAVHGLPIP---SPEINKSRIYITNLPRSTNAD 525
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ + F G IS V +M + V +++ A +AI ++G + K L V
Sbjct: 526 MMVKLFVPFGQISKV-VMNLE------YSLVYYADVASAVKAIKHMDGYMIGGKRLVV 576
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 154 EEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEA 212
+E+ + NLYV N+ V +L + F G I K+ G+SKG+GFV + +P A
Sbjct: 199 KEVDNTNLYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSA 258
Query: 213 NRAINTLNGILFHQKPLYVAIA 234
AIN +NG L K L V +A
Sbjct: 259 TAAINRMNGRLVDGKILEVRVA 280
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 82/170 (48%), Gaps = 23/170 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S K+ +GKS GYGF+ + +SA AI +L
Sbjct: 103 FVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNG 162
Query: 117 ATVEGMELYAPSL--RAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
A + +Y +A R E +F N+YVK++ TE++L K
Sbjct: 163 AVLGDRPIYVGKFQKKAERFSEKDKTFTNVYVKHIPKSWTEDLLYK-------------- 208
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223
F G ISS+ + ++G + FGFV F NPD A A+ L+ L
Sbjct: 209 ----IFGVYGKISSLVLQSDSKG--RPFGFVNFENPDSAKAAVAALHNAL 252
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 13/216 (6%)
Query: 37 SALIASIDVHSAMATPTFIPFTVNLASTIDN--WKLHQIFSK--FGDIQSSKVVVSQDGK 92
SA A +H+A+ TP + ++ DN + SK G+ + K S +
Sbjct: 240 SAKAAVAALHNALVTPVGVELDSTAETSADNEAGADSETSSKQESGEASNKKQTASSETS 299
Query: 93 SKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDV 152
G ++ + +K +A V+ LY RA + E + +K+ + V
Sbjct: 300 KDSSGTSNEEFAQNEDGSADKNVSADVQPNRLYVS--RAQKKNE----RQVVLKSQHEAV 353
Query: 153 TE---EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNP 209
E NLYVKN+ D ++E +L+ F G +SSV I G+S+GFGFV F +P
Sbjct: 354 KESHQRYQGVNLYVKNLADSINEEDLRSMFEPFGTVSSVSIKTDESGVSRGFGFVSFLSP 413
Query: 210 DEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
DEA +AI ++ L KPLYV + + K +R L+
Sbjct: 414 DEATKAITEMHLKLVRGKPLYVGLHERKEQRALRLQ 449
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 98/237 (41%), Gaps = 60/237 (25%)
Query: 9 NNNDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNW 68
NNN ++ SLYVGDLD+ DV M
Sbjct: 4 NNN---VVPVSASLYVGDLDA--------------DVTETM------------------- 27
Query: 69 KLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
L++IF+ + S V + +D +S GY +V Y++ A A++ L + G
Sbjct: 28 -LYEIFNSVAVV--SSVRICRDALTRRSLGYAYVNYNSVADAERALDTLNFTCIRG---- 80
Query: 126 APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGII 185
R RI L D + D N++VKN++ +D L FS G I
Sbjct: 81 ----RPCRIMWC----------LRDPASRRNNDGNVFVKNLDKSIDNKTLFDTFSLFGNI 126
Query: 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
S KI G S G+GF+ F + D A AI+ LNG + +P+YV Q K ER S
Sbjct: 127 MSCKIATDVEGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAERFS 183
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 30/168 (17%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L ++D + L ++FSKFG + + + + G+S+GY + + +ESA++A+ ++ +
Sbjct: 102 LPKSVDTYALKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREM-----D 156
Query: 121 GMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
GME+ ++ R Q F NLYVKNLD VT+E +
Sbjct: 157 GMEMDGQAIVVERYQAQHRDELLKQFTNLYVKNLDPAVTDE------------------K 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRAINTLNG 221
L+ +F++ G +SS K+ S+ G G+V F + A RA+ LNG
Sbjct: 199 LRAFFAKYGEVSSAKVRDLGAAQSEAGLGYVAFQKHENAARAVEELNG 246
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 12/212 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK-GYGFVQYSTQESALNAIEKLY 115
+ NL + + KL F+K+G++ S+KV +S+ G G+V + E+A A+E+L
Sbjct: 186 YVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAAQSEAGLGYVAFQKHENAARAVEELN 245
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
E + +P L R + + + + NLYVK +D V L
Sbjct: 246 GKECEIAKAGSP-LDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERL 304
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILF-HQKPLYVAI 233
++ F + G SV +M G+S+ FGFV + + A++AI LNG F +PL+V
Sbjct: 305 EELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFVTY 364
Query: 234 A-------QTKRERTSYLRIMYAKQ-GPGLAS 257
A Q ER+ R+ GPG+ +
Sbjct: 365 ALRKDARRQNLEERSKQFRVRQNPMGGPGMGA 396
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
L + KL+ F + G + S +V V S KS GYG+V + A A+++
Sbjct: 15 LDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ------ 68
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G +L + LR +IQ S V N+ VK + VD LK+ F
Sbjct: 69 AGSKLGSRYLRIAKIQRDPSKRRSGVNNI-------------LVKKLPKSVDTYALKEMF 115
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
S+ G ++++ + +G S+G+ + F + A A+ ++G+ + + V Q +
Sbjct: 116 SKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQ 173
>gi|429966446|gb|ELA48443.1| hypothetical protein VCUG_00052 [Vavraia culicis 'floridensis']
Length = 511
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 32/201 (15%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL++ D+ LH FS FG+I S KV ++ GK KG+GFVQ+ + A A++ +
Sbjct: 112 NLSADCDSKTLHDTFSIFGEILSCKVALNSQGKCKGFGFVQFKNKNGARKALKFGTEMQM 171
Query: 120 EG----MELYAPS--LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+G +E Y + ++ G S +F N++ KN TE+
Sbjct: 172 DGHAIKVEKYEKNYKIKTG----SRAFTNVFFKNFPLTTTEQ------------------ 209
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQK---PL 229
E+K F G +SS G +GFGF + N +A RAI+ L+G +F K P
Sbjct: 210 EMKDIFMSIGKVSSFYFAAKPDGTLRGFGFANYENATDAQRAIDELSGKDVFEGKYPEPF 269
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
YV AQTK++R L + K
Sbjct: 270 YVQQAQTKQQRLDSLSSAFEK 290
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 15/192 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N T ++ IF G + S DG +G+GF Y A AI++L
Sbjct: 198 FFKNFPLTTTEQEMKDIFMSIGKVSSFYFAAKPDGTLRGFGFANYENATDAQRAIDELSG 257
Query: 117 ATV------EGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
V E + + R+ S++F L + L+ +NLYV + +
Sbjct: 258 KDVFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLN-------YKRNLYVTRLPNT 310
Query: 170 VDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+ E+++ FSQ G + SV + + N K + +VCFS DEA+ A+ N I
Sbjct: 311 YGKEEVQELFSQFGKVISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEIYIDSVK 370
Query: 229 LYVAIAQTKRER 240
+ + ++K ER
Sbjct: 371 INITYFKSKNER 382
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 23/151 (15%)
Query: 70 LHQIFSKFGDIQSSKVVV-SQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
L++IFS G I + K+V + D + Y +V +S +E AL A+ KL V E+
Sbjct: 32 LYKIFSTVGSIITIKLVKPAMDNFPNYTTCYAYVLFSQEEEALEAVNKLNFFKVHDKEMR 91
Query: 126 APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGII 185
RI K++D N+ +KN++ D D L FS G I
Sbjct: 92 VMLYDKERI-----------KSMDRG--------NIVIKNLSADCDSKTLHDTFSIFGEI 132
Query: 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
S K+ ++G KGFGFV F N + A +A+
Sbjct: 133 LSCKVALNSQGKCKGFGFVQFKNKNGARKAL 163
>gi|111608842|gb|ABH10979.1| polyA-binding protein [Polytomella parva]
Length = 362
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 6/110 (5%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
DKN+YVK + ++ D+ +LK+ FS G+I+SVK+ T GIS+GFGFVCF++ +A+ AI+
Sbjct: 28 DKNVYVKFLPENFDDTKLKELFSPFGVINSVKVATTTDGISRGFGFVCFASASDASTAIS 87
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLY 267
+N KPL+V ++Q K R + A+ G T FP PT Y
Sbjct: 88 KMNRTKIEGKPLHVCLSQRKEVRIN----QQARLGQRYIPTVFP--PTGY 131
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L D+ KL ++FS FG I S KV + DG S+G+GFV +++ A AI K+ +E
Sbjct: 36 LPENFDDTKLKELFSPFGVINSVKVATTTDGISRGFGFVCFASASDASTAISKMNRTKIE 95
Query: 121 GMELYA--PSLRAGRIQESASFNNLYV 145
G L+ + RI + A Y+
Sbjct: 96 GKPLHVCLSQRKEVRINQQARLGQRYI 122
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L FS FG+I S K+ +G S GYGF+ + ESA AI +L
Sbjct: 103 FVKNLDKSIDNKTLFDTFSLFGNIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARL-- 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
GM L + G+ Q A D T N+YVK+I E L
Sbjct: 161 ---NGMILGDRPIYVGKFQRKAE----RFSEKDKTFT------NVYVKHIPKTWSEETLH 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G ISS+ + ++G + FGFV F +P+ A +A+ L+ L PL V +
Sbjct: 208 TLFGVYGKISSLVLQSDSKG--RPFGFVNFEDPESAKKAVANLHNALV--TPLGVELNSN 263
Query: 237 KRERT 241
ERT
Sbjct: 264 NSERT 268
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 104/256 (40%), Gaps = 69/256 (26%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ ++ T LH +F +G I S +V+ D K + +GFV + ESA A+ L+
Sbjct: 193 YVKHIPKTWSEETLHTLFGVYGKI--SSLVLQSDSKGRPFGFVNFEDPESAKKAVANLHN 250
Query: 117 ATVEGMELYAPSLRAGRIQ------------------ESASFNNLYVKNLDDDVTEEILD 158
A V + + S + R + E+ N+ +N +D E ++
Sbjct: 251 ALVTPLGVELNSNNSERTESGKDDGLSSISSNTESSDETVESNDYKQRNDKEDPQEADVE 310
Query: 159 KN---------------LYV----------------------------------KNINDD 169
KN LYV KN+++
Sbjct: 311 KNSDEENSVPFDVQPNRLYVSRAQKRNERQVVLKSQHEAARESQNRYQGVNLYVKNLSES 370
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+ E +L+ F G ISSV I GIS+GFGFV F +PDEA +AI ++ L KPL
Sbjct: 371 MTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPDEATKAITEMHLKLVRGKPL 430
Query: 230 YVAIAQTKRERTSYLR 245
YV + + K +R L+
Sbjct: 431 YVGLHERKEQRALRLQ 446
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 99/239 (41%), Gaps = 60/239 (25%)
Query: 7 ALNNNDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTID 66
+ NNN I+ SLYVGDLD DV M
Sbjct: 2 STNNN---IVQVSASLYVGDLDP--------------DVTETM----------------- 27
Query: 67 NWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGME 123
L++IF+ + S V + +D +S GY +V Y++ A A++ L +
Sbjct: 28 ---LYEIFNSVAVV--SSVRICRDALTRRSLGYAYVNYNSVADAERALDTLNFTCIRS-- 80
Query: 124 LYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG 183
R RI L D + + N++VKN++ +D L FS G
Sbjct: 81 ------RPCRIMWC----------LRDPASRRNNEGNVFVKNLDKSIDNKTLFDTFSLFG 124
Query: 184 IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
I S KI + G S G+GF+ F +P+ A AI LNG++ +P+YV Q K ER S
Sbjct: 125 NIMSCKIATDSEGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAERFS 183
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL+ ++ L +F +G I S + + G S+G+GFV + + + A AI +++
Sbjct: 363 YVKNLSESMTESDLRSLFEPYGTISSVSIKTDESGISRGFGFVSFLSPDEATKAITEMHL 422
Query: 117 ATVEGMELYA-----PSLRAGRIQE 136
V G LY RA R+Q+
Sbjct: 423 KLVRGKPLYVGLHERKEQRALRLQQ 447
>gi|401429856|ref|XP_003879410.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495660|emb|CBZ30966.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 594
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 30/168 (17%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L ++D + L ++FSKFG + + + + G+S+GY + + +ESA++A+ ++ +
Sbjct: 102 LPKSVDTYALKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREM-----D 156
Query: 121 GMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
GME+ ++ R Q F NLYVKNLD VT+E +
Sbjct: 157 GMEMDGQAIVVERYQAQHRDELLKQFTNLYVKNLDPAVTDE------------------K 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRAINTLNG 221
L+ +F++ G +SS K+ S+ G G+V F ++A RA+ LNG
Sbjct: 199 LRAFFAKYGEVSSAKVRDLGAVQSEAGLGYVAFQKHEDAARAVEELNG 246
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 12/212 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK-GYGFVQYSTQESALNAIEKLY 115
+ NL + + KL F+K+G++ S+KV +S+ G G+V + E A A+E+L
Sbjct: 186 YVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAVQSEAGLGYVAFQKHEDAARAVEELN 245
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
E + +P L R + + + + NLYVK +D V L
Sbjct: 246 GKECEIAKAGSP-LDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERL 304
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILF-HQKPLYVAI 233
++ F + G SV +M G+S+ FGFV + + A++AI LNG F +PL+V
Sbjct: 305 EELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFVTY 364
Query: 234 A-------QTKRERTSYLRIMYAKQ-GPGLAS 257
A Q ER+ R+ GPG+ +
Sbjct: 365 ALRKDARRQNLEERSKQFRVRQNPMGGPGMGA 396
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
L + KL+ F + G + S +V V S KS GYG+V + A A+++
Sbjct: 15 LDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQA----- 69
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G +L + LR +IQ S V N+ VK + VD LK+ F
Sbjct: 70 -GSKLGSRYLRIAKIQRDPSKRRSGVNNI-------------LVKKLPKSVDTYALKEMF 115
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
S+ G ++++ + +G S+G+ + F + A A+ ++G+ + + V Q +
Sbjct: 116 SKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQ 173
>gi|146101854|ref|XP_001469222.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|398023673|ref|XP_003864998.1| poly(a) binding protein, putative [Leishmania donovani]
gi|134073591|emb|CAM72325.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|322503234|emb|CBZ38319.1| poly(a) binding protein, putative [Leishmania donovani]
Length = 585
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 30/168 (17%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L ++D + L ++FSKFG + + + + G+S+GY + + +ESA++A+ ++ +
Sbjct: 102 LPKSVDTYALKEMFSKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREM-----D 156
Query: 121 GMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
GME+ ++ R Q F NLYVKNLD VT+E +
Sbjct: 157 GMEMDGQAIVVERYQAQHRDELLKQFTNLYVKNLDPAVTDE------------------K 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRAINTLNG 221
L+ +F++ G +SS K+ S+ G G+V F ++A RA+ LNG
Sbjct: 199 LRAFFAKYGEVSSAKVRDLGAVQSEAGLGYVAFQKHEDAARAVEELNG 246
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 12/212 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK-GYGFVQYSTQESALNAIEKLY 115
+ NL + + KL F+K+G++ S+KV +S+ G G+V + E A A+E+L
Sbjct: 186 YVKNLDPAVTDEKLRAFFAKYGEVSSAKVRDLGAVQSEAGLGYVAFQKHEDAARAVEELN 245
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
E + +P L R + + + + NLYVK +D V L
Sbjct: 246 GKECEISKAGSP-LDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSERL 304
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILF-HQKPLYVAI 233
++ F + G SV +M G+S+ FGFV + + A++AI LNG F +PL+V
Sbjct: 305 EELFQRYGETVSVTVMMDKETGVSRCFGFVSMKDQNAASQAIQELNGSTFLSPRPLFVTY 364
Query: 234 A-------QTKRERTSYLRIMYAKQ-GPGLAS 257
A Q ER+ R+ GPG+ +
Sbjct: 365 ALRKDARRQNLEERSKQFRVRQNPMGGPGMGA 396
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 20/178 (11%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
L + KL+ F + G + S +V V S KS GYG+V + A A+++
Sbjct: 15 LDPDLQEQKLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ------ 68
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G +L + LR +IQ S V N+ VK + VD LK+ F
Sbjct: 69 AGSKLGSRYLRIAKIQRDPSKRRSGVNNI-------------LVKKLPKSVDTYALKEMF 115
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
S+ G ++++ + +G S+G+ + F + A A+ ++G+ + + V Q +
Sbjct: 116 SKFGRLTAIGLACDEKGESRGYARISFEREESAVDAVREMDGMEMDGQAIVVERYQAQ 173
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 19/190 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ L+ IFS G + S +V K S GY +V ++ E+ AIE+L
Sbjct: 41 YVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLN 100
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S +L K N+++KN++ D+D L
Sbjct: 101 YTPIKG--------RLCRIMWSQRDPSLRKKG----------SGNIFIKNLHPDIDNKAL 142
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S KI G SKGFGFV F A AI+ LNG+L + + +YVA
Sbjct: 143 YDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHL 202
Query: 236 TKRERTSYLR 245
+++ER S L
Sbjct: 203 SRKERDSQLE 212
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FGDI SSK+ ++GKSKG+GFV + + +A AI+ L
Sbjct: 129 FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNG 188
Query: 117 ATVEGMELY-APSL----RAGRIQES-ASFNNLYVK 146
+ G E+Y AP L R +++E+ A + NLYVK
Sbjct: 189 MLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVK 224
>gi|432101459|gb|ELK29641.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 146
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLY+KN++D V + L++ FS G I+S K+M + G SKGFGFVCFS+P EA +A+ +
Sbjct: 45 NLYIKNLDDTVGDENLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSP-EAIKAVTKM 102
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG + KPLYVA+A+ + + ++YL
Sbjct: 103 NGCVMSSKPLYVALARRRGKGSAYL 127
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL T+ + L + FS FG I S+KV++ +DG+SKG+GFV +S+ E A+ A+ K+
Sbjct: 47 YIKNLDDTVGDENLRKEFSPFGSITSAKVML-EDGRSKGFGFVCFSSPE-AIKAVTKMNG 104
Query: 117 ATVEGMELY-APSLRAGR 133
+ LY A + R G+
Sbjct: 105 CVMSSKPLYVALARRRGK 122
>gi|326430672|gb|EGD76242.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 765
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL+VKN N++V E +L+++F +CG + SVK+MR G+S+ FGFV F+ +EA AI
Sbjct: 439 NLFVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAKK 498
Query: 220 NGILFHQKPLYVAIAQTKRERTS 242
N +P+YVA T++ER +
Sbjct: 499 NRQPLQDRPIYVAFHLTRQERQA 521
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK-GYGFVQYSTQESALNAIEKLY 115
+ +L+ ++ +L +FS G + S +V Q +S GYG+V ++ E A A+ +L
Sbjct: 82 YVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAEAAMGQLN 141
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + + + + N+++ L D T + L
Sbjct: 142 FHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTS------------------VHL 183
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ F Q G I S K + + G +GFGFV F +P A RAI NG
Sbjct: 184 RDTFEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANG 229
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 23/179 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L + + L F +FG I S K V+ G+ +G+GFV + + A AI +
Sbjct: 170 FISGLPADTTSVHLRDTFEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANG 229
Query: 117 ATVEG---MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
G + + R R QE KN N+YVK++ D DE
Sbjct: 230 KDAGGDRKLRVAPFKPRKQREQEQEE----RTKNF----------TNVYVKSLRRDADEE 275
Query: 174 ELKQYFSQCGIISSVKIMRTN--RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
EL + F G I+S K +RT + + +GFV F++ + A + + HQ+ ++
Sbjct: 276 ELGKLFEPYGDITS-KALRTYKLKDTERPYGFVNFADTEAAQKCVEEGE---MHQRDIF 330
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEK 113
F N + L + F + G + S KV+ ++G S+ +GFV ++T+E A +AI K
Sbjct: 441 FVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAK 497
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 17/180 (9%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLYAAT 118
NL + D +L Q+F +FG ++S +VV +++ G S+G+ FV ST + A +AIEKL +
Sbjct: 100 NLPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAKSAIEKLQGSD 159
Query: 119 VEGMELYA--PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ P+ + +E+ DD E L+V N+ V + LK
Sbjct: 160 LGGRDMIVNFPAKVLSKKKET-----------DDSYIE--TPYQLFVGNLAWSVKKEILK 206
Query: 177 QYFSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FSQ G +S+ K++ + +G + + FGFVC S+ E AI +L+G FH + L V A+
Sbjct: 207 SLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHGKEFHGRNLKVRQAR 266
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 18/196 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
F NLA ++ L +FS+ G++ ++KV+ S + G + +GFV S+Q +AI L+
Sbjct: 192 FVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLH 251
Query: 116 AATVEGMELYAPSLR-------AGRIQESASFNNLYVKNLDDDVTEEILDK------NLY 162
G L R ++E+ + + V +D +TE + +Y
Sbjct: 252 GKEFHGRNLKVRQARPTSKDMVVSDVEENIAKPSTMV---EDSMTETVKATFVGSAYGVY 308
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNG 221
V N++ V L + FSQ G + +++ + G S+ +GFV FS+ E AI L+
Sbjct: 309 VSNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNFSSQAEVEAAIAALDK 368
Query: 222 ILFHQKPLYVAIAQTK 237
F+++ L V A+ K
Sbjct: 369 KEFYERKLVVKEAKVK 384
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 16/190 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++D+ +L +F + G ++ +VV Q G+S+G+GFV ST E A A+E+
Sbjct: 78 FVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQFN 137
Query: 116 AATVEGMELYA----PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
T +G L P R S N D LYV N+ VD
Sbjct: 138 GYTFQGRPLRVNSGPPPPRDDFAPRSPRGGG---SNFDSS-------NKLYVGNLAWGVD 187
Query: 172 EIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
L+ FS+ G + K++ G S+GFGFV + + +E N AI+ L+G+ + +
Sbjct: 188 NSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIR 247
Query: 231 VAIAQTKRER 240
V +A++K R
Sbjct: 248 VTVAESKPRR 257
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 16/190 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++D+ +L +F + G ++ +VV Q G+S+G+GFV ST E A A+E+
Sbjct: 83 FVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQFN 142
Query: 116 AATVEGMELYA----PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
T +G L P R S N D LYV N+ VD
Sbjct: 143 GYTFQGRPLRVNSGPPPPRDDFAPRSPRGGG---SNFDSS-------NKLYVGNLAWGVD 192
Query: 172 EIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
L+ FS+ G + K++ G S+GFGFV + + +E N AI+ L+G+ + +
Sbjct: 193 NSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIR 252
Query: 231 VAIAQTKRER 240
V +A++K R
Sbjct: 253 VTVAESKPRR 262
>gi|300707142|ref|XP_002995792.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
gi|239605007|gb|EEQ82121.1| hypothetical protein NCER_101231 [Nosema ceranae BRL01]
Length = 508
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 98/201 (48%), Gaps = 24/201 (11%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL S+ N L+ FS FG I S+K+ DGK K YGFVQ+ ++SA AI+ +
Sbjct: 102 NLPSSFTNENLYDTFSVFGTIISAKIATYADGKPKNYGFVQFDKKKSAKMAIKHCDGGKL 161
Query: 120 EG----MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ +E++ R R QE + N VK L+ T N ++KN + E +L
Sbjct: 162 DNKIIQVEIFDKEKR--RKQEEQALENKPVK-LEPKFT------NCFIKNFPESFTEKDL 212
Query: 176 KQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNG---ILFHQ----- 226
+ ++ G I+S+ ++ +SKGF F F + + A AI L+G F +
Sbjct: 213 ESLLNKYGNITSIYFPLKDGTFVSKGFAFANFESHESAQNAIQELHGKQIFPFEENSYTT 272
Query: 227 --KPLYVAIAQTKRERTSYLR 245
+P Y+ AQ K ER YL+
Sbjct: 273 KLEPFYIQKAQKKEEREEYLK 293
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 9/193 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK--SKGYGFVQYSTQESALNAIEKL 114
F N + L + +K+G+I S + +DG SKG+ F + + ESA NAI++L
Sbjct: 199 FIKNFPESFTEKDLESLLNKYGNITSIYFPL-KDGTFVSKGFAFANFESHESAQNAIQEL 257
Query: 115 YAATVEGMEL--YAPSLRAGRIQESASFNNL--YVKNLDDDVTEE--ILDKNLYVKNIND 168
+ + E Y L IQ++ Y+K + ++ E + +NLY+ NI
Sbjct: 258 HGKQIFPFEENSYTTKLEPFYIQKAQKKEEREEYLKRSFEQLSLEGQNIKRNLYITNIPA 317
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+++ ++ + FS+ G I S I + + +VC+S DEA AI N +
Sbjct: 318 FIEKDDIFEIFSEFGSIVSFSIGIDAVNEQRKYAYVCYSTSDEAFIAIEKGNELFIDNNK 377
Query: 229 LYVAIAQTKRERT 241
L V + K ERT
Sbjct: 378 LNVTYFKNKAERT 390
>gi|326430719|gb|EGD76289.1| polyadenylate binding protein [Salpingoeca sp. ATCC 50818]
Length = 642
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN N++V E +L+++F +CG + SVK+MR G+S+ FGFV F+ +EA AI
Sbjct: 430 NLYVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAKK 489
Query: 220 NGILFHQKPLYVAIAQTKRE 239
N +P+YVA T++E
Sbjct: 490 NRQPLQDRPIYVAFHLTRQE 509
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 19/166 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK-GYGFVQYSTQESALNAIEKLY 115
+ +L+ ++ +L +FS G + S +V Q +S GYG+V ++ E A A+ +L
Sbjct: 73 YVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITRSSLGYGYVNFNKAEDAEAAMGQLN 132
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G + + + + N+++ L D T + L
Sbjct: 133 FHDLHGRHIRIMKVERDPKKRRSGVGNIFISGLPADTTS------------------VHL 174
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ F Q G I S K + + G +GFGFV F +P A RAI NG
Sbjct: 175 RDTFEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANG 220
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 23/179 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L + + L F +FG I S K V+ G+ +G+GFV + + A AI +
Sbjct: 161 FISGLPADTTSVHLRDTFEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANG 220
Query: 117 ATVEG---MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
G + + R R QE KN N+YVK++ DE
Sbjct: 221 KDAGGDRKLRVAPFKPRKQREQEQEE----RTKNF----------TNVYVKSLRRGADEE 266
Query: 174 ELKQYFSQCGIISSVKIMRTN--RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
EL + F G I+S K +RT + + +GFV F++ + A + + HQ+ ++
Sbjct: 267 ELGKLFEPYGDITS-KALRTYKLKDTERPYGFVNFADTEAAQKCVEEGE---MHQRDIF 321
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEK 113
+ N + L + F + G + S KV+ ++G S+ +GFV ++T+E A +AI K
Sbjct: 432 YVKNFNENVTEEDLRKFFEECGHVMSVKVMRDKEGVSRCFGFVTFATREEAESAIAK 488
>gi|170099716|ref|XP_001881076.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643755|gb|EDR08006.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 870
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 30/293 (10%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG----MEL 124
+L +F FG + S++ +Q G V++ + A A + L+ A +EG +++
Sbjct: 253 QLFDLFRPFGALASAR---TQTHFGADTGMVEFWNENDARQAEDSLHCADIEGQNIAVQV 309
Query: 125 YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY----VKNINDDVDEIELKQYFS 180
Y P +G + + + ++Y +N++ D+D L +F
Sbjct: 310 YQPRRTSGGA----------IPEFNASAPTFVPSGSMYSPYPTQNLDPDIDSNGLFTHFR 359
Query: 181 QCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
Q G+I S ++MR G S+GFGFV + PD+AN A++ +NG K + V + + K+ R
Sbjct: 360 QFGMIVSARVMRNENGESRGFGFVSYQTPDQANAAMHAMNGAQLGSKQVVVRLHEPKQLR 419
Query: 241 TSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSPLFLT 300
L + G +S+ PT A +V G+ ++P SP S
Sbjct: 420 QEKLAQRFGHNGHPRSSSGA-TSPT----ASEVGDYSGWGSPRLLPTSLGSPKGSIYERP 474
Query: 301 RAGQAAANNLTNGNQRAAANNSM----LAVASPDERKDILGQGLYPLVKKLKV 349
G+ + + N N M LA SP RK++L L VKKL +
Sbjct: 475 ERGRRGSGSYYNAALTGTLNLPMRYDDLASLSPVVRKEVLTGELSRRVKKLDI 527
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 50 ATPTFIPF--------TVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQY 101
+ PTF+P T NL ID+ L F +FG I S++V+ +++G+S+G+GFV Y
Sbjct: 326 SAPTFVPSGSMYSPYPTQNLDPDIDSNGLFTHFRQFGMIVSARVMRNENGESRGFGFVSY 385
Query: 102 STQESALNAIEKLYAATV 119
T + A A+ + A +
Sbjct: 386 QTPDQANAAMHAMNGAQL 403
>gi|281204064|gb|EFA78260.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 617
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 92/198 (46%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +DN L FSKFG+I S K+ + G SKGYG+V + TQES+ AI+ +
Sbjct: 231 FVKNLDKQVDNAMLFDTFSKFGNILSCKIEY-EKGVSKGYGYVHFETQESSDRAIQGVNG 289
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G + + R +E + L++KN+D+ T E +
Sbjct: 290 TMLCGKPITVEQFVSKVERFKEKNE-HKLFIKNIDELATVE------------------Q 330
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L+ S+ G I S I N G SKG GFV F + ++A R ++ I KP+ +
Sbjct: 331 LQAELSRFGEIESCIIRLDNNGKSKGLGFVEFKSVEDAQRLMDNPEPIQILSKPITIDRI 390
Query: 235 QTKRERTSYLRIMYAKQG 252
+ K ER R + +Q
Sbjct: 391 KNKMERNIEHRQIKQQQA 408
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 22/187 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ +LA ++ L ++FSK G + + V +D +S GY +V + A A++
Sbjct: 141 YVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSIDAERALDT 200
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + + G R RI S L D + N++VKN++ VD
Sbjct: 201 LNYSQIMG--------RPCRIMWS----------LRDPTKRKSNVGNIFVKNLDKQVDNA 242
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS+ G I S KI +G+SKG+G+V F + ++RAI +NG + KP+ V
Sbjct: 243 MLFDTFSKFGNILSCKI-EYEKGVSKGYGYVHFETQESSDRAIQGVNGTMLCGKPITVEQ 301
Query: 234 AQTKRER 240
+K ER
Sbjct: 302 FVSKVER 308
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
L++ NI++ +D+ +++ F++ G I +KI++ N G ++GFGF+ +S +EAN AI +N
Sbjct: 461 LFIHNIDESIDKEVIREEFAKHGTILGIKIVQEN-GKNRGFGFLSYSTQEEANIAIEKMN 519
Query: 221 GILFHQKPLYVAIAQTKRER 240
G + KPL V+ + K ++
Sbjct: 520 GFILGSKPLSVSFSNRKYKK 539
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114
F N+ +ID + + F+K G I K+V ++GK++G+GF+ YSTQE A AIEK+
Sbjct: 462 FIHNIDESIDKEVIREEFAKHGTILGIKIV-QENGKNRGFGFLSYSTQEEANIAIEKM 518
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 161 LYVKNINDDVDEIELKQYFSQCG--IISSVKIMRTNRGI-SKGFGFVCFSNPDEANRAIN 217
LYV ++ DV+EI L + FS+ G ++S+ + R + S G+ +V F N +A RA++
Sbjct: 140 LYVGDLAPDVNEIMLSELFSKVGRSAVASIHVCRDSITFRSLGYAYVNFFNSIDAERALD 199
Query: 218 TLN 220
TLN
Sbjct: 200 TLN 202
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 101/201 (50%), Gaps = 13/201 (6%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESAL 108
A P F NL ++D+ L ++F + GD++ +V+ + G+S+G+GFV S++E+
Sbjct: 95 ANPDLKIFVGNLPFSVDSAALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVE 154
Query: 109 NAIEKLYAATVEGMELY-----APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYV 163
A ++ ++G L AP R +++S+ D +YV
Sbjct: 155 AACQQFNGYEIDGRALRVNSGPAPPKRENSFGDNSSYQGGRGGGSMDS------SNRVYV 208
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
N+ VD+ +L+ FS+ G + K++ + G S+GFGFV +S+ E N AI +L+G+
Sbjct: 209 GNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGV 268
Query: 223 LFHQKPLYVAIAQTKRERTSY 243
+ + V+ A+ + R +
Sbjct: 269 DLGGRAIRVSPAEARPPRRQF 289
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B, chloroplastic; AltName:
Full=CP29B; Flags: Precursor
gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
Length = 291
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 106/200 (53%), Gaps = 16/200 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++D+ L +F + G+++ +V+ + G+S+G+GFV ST+E A ++
Sbjct: 90 FVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFN 149
Query: 116 AATVEGMELYAPSLRAGRIQESASF------NNLYVKNLDDDVT-------EEILDKN-L 161
++G + + A +E++SF N+ Y D + + + N +
Sbjct: 150 GYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRV 209
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLN 220
YV N++ VD++ LK+ FS+ G + K++ + G S+GFGFV +S+ E N AI++LN
Sbjct: 210 YVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLN 269
Query: 221 GILFHQKPLYVAIAQTKRER 240
G+ + + V+ A+ + R
Sbjct: 270 GVDLDGRSIRVSAAEERPRR 289
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 17/165 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL IDN L+ FS FG+I S KV ++ DGKS+G+GFV + + ESA AI KL
Sbjct: 18 YVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL-- 75
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
GM++ ++ +++A N+ KN N+Y+K+I +E ++K
Sbjct: 76 ---NGMQIGEKTVYVAPFKKTAERNDGTPKNF----------TNVYIKHIPASWNEEKIK 122
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ F G I+S+ + +G + F FV ++ ++A A+ ++G
Sbjct: 123 EEFGAFGEITSLAVQTDPKG--RRFAFVNYAEFEQARAAVEEMDG 165
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+YVKN++ ++D L FS G I S K+ T G S+GFGFV F + + A AI L
Sbjct: 16 NVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL 75
Query: 220 NGILFHQKPLYVAIAQTKRER 240
NG+ +K +YVA + ER
Sbjct: 76 NGMQIGEKTVYVAPFKKTAER 96
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor
gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 106/200 (53%), Gaps = 16/200 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++D+ L +F + G+++ +V+ + G+S+G+GFV ST+E A ++
Sbjct: 91 FVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFN 150
Query: 116 AATVEGMELYAPSLRAGRIQESASF------NNLYVKNLDDDVT-------EEILDKN-L 161
++G + + A +E++SF N+ Y D + + + N +
Sbjct: 151 GYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRV 210
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLN 220
YV N++ VD++ LK+ FS+ G + K++ + G S+GFGFV +S+ E N AI++LN
Sbjct: 211 YVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLN 270
Query: 221 GILFHQKPLYVAIAQTKRER 240
GI + + V+ A+ + R
Sbjct: 271 GIDLDGRSIRVSAAEERPRR 290
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 34/199 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++D+ +L +F + G ++ +VV Q G+S+G+GFV ST E A AIE+
Sbjct: 24 FVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAIEQFN 83
Query: 116 AATVEGMEL------------YAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
T +G L +AP S R G N D LY
Sbjct: 84 GYTFQGRPLRVNSGPPPPRDDFAPRSPRGGG------------SNFDSS-------NKLY 124
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNG 221
V N+ VD L+ FS+ G + K++ G S+GFGFV + + +E N AI+ L+G
Sbjct: 125 VGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDG 184
Query: 222 ILFHQKPLYVAIAQTKRER 240
+ + + V +A++K R
Sbjct: 185 VDLDGRQIRVTVAESKPRR 203
>gi|440493085|gb|ELQ75593.1| Polyadenylate-binding protein (RRM superfamily), partial
[Trachipleistophora hominis]
Length = 513
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 96/201 (47%), Gaps = 32/201 (15%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL++ D+ LH FS FG+I S KV + GK KG+GFVQ+ + A A++ +
Sbjct: 114 NLSADCDSKTLHDTFSIFGEILSCKVAQNSQGKCKGFGFVQFKNKNGARKALKFGTEMQM 173
Query: 120 EG----MELYAPS--LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+G +E Y + ++ G S +F N++ KN TE+
Sbjct: 174 DGHAIKVEKYEKNYKIKTG----SRAFTNVFFKNFPSTTTEQ------------------ 211
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQK---PL 229
+LK+ F G +SS G +GFGF + N +A +AI+ L+G +F K P
Sbjct: 212 QLKEIFMSIGKVSSFYFATKPDGGLRGFGFANYENAADAQKAIDELSGKDIFEGKYPEPF 271
Query: 230 YVAIAQTKRERTSYLRIMYAK 250
YV AQTK++R L + K
Sbjct: 272 YVQQAQTKQQRLDSLSSAFEK 292
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 15/192 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N ST +L +IF G + S DG +G+GF Y A AI++L
Sbjct: 200 FFKNFPSTTTEQQLKEIFMSIGKVSSFYFATKPDGGLRGFGFANYENAADAQKAIDELSG 259
Query: 117 ATV------EGMELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ E + + R+ S++F L + L+ +NLYV +
Sbjct: 260 KDIFEGKYPEPFYVQQAQTKQQRLDSLSSAFEKLSMSGLN-------YKRNLYVTRLPST 312
Query: 170 VDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+ E+++ FSQ G I SV + + N K + +VCFS DEA+ A+ N +
Sbjct: 313 YGKEEVEELFSQYGKIISVCVGKDNVVNEDKNWAYVCFSTADEASIAVEKGNEVYIDSVK 372
Query: 229 LYVAIAQTKRER 240
+ V ++K ER
Sbjct: 373 INVTYFKSKNER 384
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 23/151 (15%)
Query: 70 LHQIFSKFGDIQSSKVV--VSQD--GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125
L++IFS G I + K+V V + + Y +V +S +E AL A+ KL V E+
Sbjct: 34 LYKIFSTVGSIITIKLVKPVMDNFPNYTTCYAYVLFSQEEEALEAVNKLNFFKVHDKEMR 93
Query: 126 APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGII 185
RI K++D N+ +KN++ D D L FS G I
Sbjct: 94 VMLYDKERI-----------KSMDRG--------NIVIKNLSADCDSKTLHDTFSIFGEI 134
Query: 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
S K+ + ++G KGFGFV F N + A +A+
Sbjct: 135 LSCKVAQNSQGKCKGFGFVQFKNKNGARKAL 165
>gi|393212747|gb|EJC98246.1| hypothetical protein FOMMEDRAFT_171180 [Fomitiporia mediterranea
MF3/22]
Length = 803
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 58/90 (64%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL+VKNI++ +D L Q+F+Q G I S ++MR G S+GFGFV + PD+A A++++
Sbjct: 253 NLFVKNIDETIDSGTLFQHFTQFGQIVSARVMRDESGRSRGFGFVSYQTPDQAALALHSM 312
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
NG++ QK + V + + K+ R L +A
Sbjct: 313 NGVVLGQKQIVVRLHEPKQLRQEKLAARFA 342
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 46 HSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQE 105
HS + P + F N+ TID+ L Q F++FG I S++V+ + G+S+G+GFV Y T +
Sbjct: 245 HSGLIDPCNL-FVKNIDETIDSGTLFQHFTQFGQIVSARVMRDESGRSRGFGFVSYQTPD 303
Query: 106 SALNAIEKL 114
A A+ +
Sbjct: 304 QAALALHSM 312
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 7/185 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL T+D+ +L +F + G ++ +VV + G+S+G+GFV ST E A+E+
Sbjct: 87 FVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAVEQFN 146
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN--LYVKNINDDVDEI 173
T +G L + +G F + + D LYV N++ VD
Sbjct: 147 GYTFQGRPL---RVNSGPPPPRDEFAPRTPRGMGGGGGGGSFDSGNKLYVGNLSWGVDNS 203
Query: 174 ELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L+ FS+ G + K++ + G S+GFGFV + + DE N AI+ L+G+ + + V
Sbjct: 204 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVT 263
Query: 233 IAQTK 237
+A++K
Sbjct: 264 VAESK 268
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAI 216
D L+V N+ VD +L F Q G + V+++ G S+GFGFV S +E + A+
Sbjct: 83 DLKLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAV 142
Query: 217 NTLNGILFHQKPLYV 231
NG F +PL V
Sbjct: 143 EQFNGYTFQGRPLRV 157
>gi|412985322|emb|CCO20347.1| predicted protein [Bathycoccus prasinos]
Length = 789
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 94/195 (48%), Gaps = 27/195 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK--SKGYGFVQYSTQESALNAIEKL 114
+ NL + N +L IF KFG + + VV +D + KG+ FV ++T+ A +AI
Sbjct: 510 YVANLPPHVTNEQLRPIFEKFGRVTACDVVPDRDKQLSCKGFAFVTFATEVEARSAIPHT 569
Query: 115 YAATVEGMELYAPSLRAGRIQESASFNNLYV--------KNLDDDVTEEILDKNLYVKNI 166
T+EG R+ E+ N V +DV EE LYV N+
Sbjct: 570 NGMTIEG-----------RVVETRIKNEPKVPIHNASGGDTAQEDVNEEA---KLYVANL 615
Query: 167 NDDVDEIELKQYFSQCGIISSVK-IMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
+E +LK FS G++ SVK ++ G+SKG+GFV + ++A A+ ++G +
Sbjct: 616 PSHYEEEDLKTLFSPYGLVQSVKLVLDHTTGLSKGYGFVQMMDQEQAMSAVVAVHGNMVE 675
Query: 226 --QKPLYVAIAQTKR 238
KPL V IA K+
Sbjct: 676 GCTKPLVVNIANDKK 690
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 3/187 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++D+ +L ++F G+++ +V+ + G+S+G+GFV S+ E A A ++
Sbjct: 92 FVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQFN 151
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G L S ESA + ++V N+ VD++ L
Sbjct: 152 GYELDGRSLRVNSGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVGNLAWGVDDVAL 211
Query: 176 KQYFSQCG--IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+ F + G ++ + I G S+GFGFV F +PDE AI +L+G+ + + + V++
Sbjct: 212 ESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQSLDGVDLNGRAIRVSL 271
Query: 234 AQTKRER 240
A +K +R
Sbjct: 272 ADSKPKR 278
>gi|401409932|ref|XP_003884414.1| putative splicing factor [Neospora caninum Liverpool]
gi|325118832|emb|CBZ54384.1| putative splicing factor [Neospora caninum Liverpool]
Length = 550
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 99/189 (52%), Gaps = 27/189 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ NL S +D+ L ++F + G +++ V V +D G +GYGFV+++ N ++
Sbjct: 32 YIGNLDSQVDDDLLWELFVQCGPVRT--VSVPRDKLTGNHQGYGFVEFT------NEVDA 83
Query: 114 LYAATVEGM-ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
YA + M +LY SLR + +SA +N D + N+++ N++ DVDE
Sbjct: 84 DYALKLMNMVKLYGKSLR---LNKSAQDR----RNFD-------VGANIFLGNLDPDVDE 129
Query: 173 IELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ FS G I + KIMR GIS+GFGFV F + ++ A+ +NG +P++V
Sbjct: 130 KTIYDTFSTFGNILTAKIMRDPETGISRGFGFVSFDTFEASDAALAAMNGQFICNRPIHV 189
Query: 232 AIAQTKRER 240
+ A K R
Sbjct: 190 SYAYKKDTR 198
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPD 210
V E D LY+ N++ VD+ L + F QCG + +V + R G +G+GFV F+N
Sbjct: 22 VYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFTNEV 81
Query: 211 EANRAINTLNGILFHQKPLYV-AIAQTKR 238
+A+ A+ +N + + K L + AQ +R
Sbjct: 82 DADYALKLMNMVKLYGKSLRLNKSAQDRR 110
>gi|17531963|ref|NP_495120.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
gi|373219011|emb|CCD65016.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
Length = 376
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 36/229 (15%)
Query: 19 PFSLYVGDLDST-----------------------DLLRLCSALIASIDVHSAMATPTFI 55
P +LYVG+LDST D +++ A+ T F
Sbjct: 45 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEMKVNWAVEPGQQQSKIDTTRHFH 104
Query: 56 PFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKL 114
F +L+S +DN KL + F FGD+ +KV+ + KSKGYGFV Y +E A AIE++
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 115 YAATV--EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVD 171
+ + + + G ++ + +N K+ D+ + D ++YV NI +
Sbjct: 165 NGQWLGRRTIRTNWATRKPGDQEKPSHYNE---KSYDEIYNQTSGDNTSVYVGNI-ASLT 220
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
E E++Q F+ G I+ V+I + +G+ FV F N D A +AI +N
Sbjct: 221 EDEIRQGFASFGRITEVRIFKM-----QGYAFVKFDNKDAAAKAIVQMN 264
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINT 218
+++V +++ +VD +L++ F G +S K++R TN SKG+GFV + +EA RAI
Sbjct: 104 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQ 163
Query: 219 LNGILFHQKPLYVAIAQTK 237
+NG ++ + A K
Sbjct: 164 MNGQWLGRRTIRTNWATRK 182
>gi|326429915|gb|EGD75485.1| poly(A)-binding protein [Salpingoeca sp. ATCC 50818]
Length = 1688
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL+VKN N++V E +L+++F +CG + VK+MR G+S+ FGFV F+ +EA AI
Sbjct: 608 NLFVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIFATREEAESAIAKK 667
Query: 220 NGILFHQKPLYVAIAQTKRER 240
N +P+YVA T++ER
Sbjct: 668 NRQTLQDRPIYVAFHLTRQER 688
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 21/167 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L+ ++ +L +FS G + S +V Q S GYG+V ++ E A A+ +L
Sbjct: 251 YVGDLSPQVNETELFNLFSSIGSVMSVRVCRDQITHGSLGYGYVNFNKAEDAEAAMGQLN 310
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIE 174
+ G ++ + ++ D + D +N+ V + D +
Sbjct: 311 FHDLHG-------------------RHIRIMKVERDPKKRRSDPRNIVVTGLPADTTSVH 351
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
L+ F Q G I S K + + G +GFGFV F +P A RAI NG
Sbjct: 352 LRDTFEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANG 398
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 23/166 (13%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG---MELYA 126
L F +FG I S K V+ G+ +G+GFV + + A AI + G + +
Sbjct: 352 LRDTFEQFGKILSCKAVLDHSGRCRGFGFVHFEDPKVAERAIAEANGKDAGGDRKLRVAP 411
Query: 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIIS 186
R R QE KN N+YVK++ D DE EL + F G I+
Sbjct: 412 FKPRKQREQEQEE----RTKNF----------TNVYVKSLRRDADEEELGKLFEPYGDIT 457
Query: 187 SVKIMRTN--RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
S K +RT + + +GFV F++ + A + + HQ+ ++
Sbjct: 458 S-KALRTYKLKDTERPYGFVNFADTEAAQKCVEEGE---MHQRDIF 499
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N + L + F + G + KV+ +G S+ +GFV ++T+E A +AI K
Sbjct: 610 FVKNFNENVTEEDLRKFFEECGHVIDVKVMRDMEGVSRCFGFVIFATREEAESAIAKKNR 669
Query: 117 ATVEGMELY 125
T++ +Y
Sbjct: 670 QTLQDRPIY 678
>gi|402222093|gb|EJU02160.1| hypothetical protein DACRYDRAFT_115923 [Dacryopinax sp. DJM-731
SS1]
Length = 846
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL++KN++ DVD L + F Q G I S ++MR ++G SKGFGFV F PDEA+ A+ +
Sbjct: 311 NLFIKNLDFDVDSHMLFEAFKQFGRIVSARVMRNDQGTSKGFGFVSFQTPDEASTALQIM 370
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYA-KQGPGLASTNFPVH 263
+G + + K + V + + K R LR ++ K+G + PVH
Sbjct: 371 DGSMLNNKQIVVRLHEPKALRQEKLRERFSGKRGARASGGASPVH 415
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIE 112
F NL +D+ L + F +FG I S++V+ + G SKG+GFV + T + A A++
Sbjct: 313 FIKNLDFDVDSHMLFEAFKQFGRIVSARVMRNDQGTSKGFGFVSFQTPDEASTALQ 368
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 20/190 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL +D+ KL Q+F + G ++ ++V+ ++D +S+G+GFV ST E A+ K
Sbjct: 125 FVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKFS 184
Query: 116 AATVEGMELY---APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
++G L A R+++ +FN+ YV N+ DVD
Sbjct: 185 GFELDGRLLTVNNAAPRGTPRLRQPRTFNSGL---------------RAYVGNLPWDVDN 229
Query: 173 IELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
L+Q FS+ G + S +++ G +GFGFV SN E N AI L+G F+ + + V
Sbjct: 230 SSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRV 289
Query: 232 AIAQTKRERT 241
+A+ + R+
Sbjct: 290 NVAEERPRRS 299
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI--SKGFGFVCFSNPDEANRA 215
D ++V N+ DVD +L Q F Q G + +++ NR S+GFGFV S +E RA
Sbjct: 121 DLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVI-YNRDTDRSRGFGFVTMSTSEEVERA 179
Query: 216 INTLNGILFHQKPLYV 231
+N +G + L V
Sbjct: 180 VNKFSGFELDGRLLTV 195
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 17/165 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL IDN L+ FS FG+I S KV ++ DGKS+G+GFV + + ESA AI KL
Sbjct: 140 YVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKL-- 197
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
GM++ ++ + +++A ++ KN N+Y+K+I E +++
Sbjct: 198 ---NGMQIGEKTVYVAQFKKTADRSDGSPKNF----------TNVYIKHIPPSWTEEKIR 244
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ F G I+S + +G + F FV F+ ++A A+ ++G
Sbjct: 245 EEFGAFGEITSFAMQTDPKG--RRFAFVNFAEFEQARAAVEDMDG 287
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 30/212 (14%)
Query: 41 ASIDVHSAMATPTF--IP-------FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQD 90
A++D S PT +P + +LA ++ L+++F+ G + S +V S
Sbjct: 27 ATVDTTSGDPAPTVGGVPTQQFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVT 86
Query: 91 GKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL-YAPSLRAGRIQESASFNNLYVKNLD 149
KS GY ++ + A A++ L + + G S R ++ S + N+YVKNLD
Sbjct: 87 RKSLGYAYINFHNVADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGA-GNVYVKNLD 145
Query: 150 DDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNP 209
+NI D L FS G I S K+ T G S+GFGFV F +
Sbjct: 146 --------------RNI----DNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESD 187
Query: 210 DEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
+ A AI LNG+ +K +YVA + +R+
Sbjct: 188 ESAEAAIAKLNGMQIGEKTVYVAQFKKTADRS 219
>gi|123446312|ref|XP_001311908.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893735|gb|EAX98978.1| hypothetical protein TVAG_431870 [Trichomonas vaginalis G3]
Length = 574
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 103/191 (53%), Gaps = 18/191 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L +ID +LH++F+ +G+I S ++ + +G+ +G+G+VQ+ QE A +A+++L
Sbjct: 102 FIKGLDESIDCLQLHELFANYGEIVSCRIP-TLNGQPRGFGYVQFLKQEDAEHAMKELAD 160
Query: 117 ATVEGMEL-YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE-IE 174
+TV G + P L+ SA+F N NLD T N++VKN+ D+++ +
Sbjct: 161 STVNGKPIQIGPFLKRSERPLSAAFQN----NLDSSFT------NVFVKNLPDNINTLLS 210
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + F + G ++S +I+ + G+V S + A RA+ L G K L V +
Sbjct: 211 LLRLFHEFGDVTSARIVP-----ERHIGYVMMSEHEAAVRAVVGLCGRTIFGKRLSVCRS 265
Query: 235 QTKRERTSYLR 245
+ ER ++++
Sbjct: 266 LSPAERANFIK 276
>gi|452986581|gb|EME86337.1| hypothetical protein MYCFIDRAFT_97432, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 540
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 12/184 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + + +L + F + GD+ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 161 FVQQLAARLRSRELKEFFQQVGDVVDAQIVKDRVSGRSKGVGYVEFKEEESVQKAIQ-LT 219
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE--ILDKNLYVKNINDDVDEI 173
+ G+ + A Q + + N +N + T+ I LYV NI+ + E
Sbjct: 220 GQKLLGIPIIA--------QLTEAEKNRQARNTEGTATQSNGIPFHRLYVGNIHFSITED 271
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK F G + V++ + G SKG+GFV F +P +A A+ +NG +P+ V +
Sbjct: 272 DLKNVFEPFGELEFVQLQKEEAGRSKGYGFVQFIDPAQAKEALEKMNGFELAGRPIRVGL 331
Query: 234 AQTK 237
K
Sbjct: 332 GNDK 335
>gi|281206149|gb|EFA80338.1| RNA recognition motif-containing protein RRM [Polysphondylium
pallidum PN500]
Length = 640
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 17/189 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L + +++L +FS FG + S+KV+V G S GYGFV++S+ + AI+ +
Sbjct: 72 FVKYLPNEYGDYELFTLFSPFGKVMSAKVMVDAKGNSYGYGFVRFSSPSESKKAIDNM-- 129
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+G +L L ++ NN Y N NL++K + + + +LK
Sbjct: 130 ---DGFQLMHKKLLCRLSNLYSNCNNKYPSN------------NLFLKPLPATLSDDQLK 174
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I K+M G SK GFV F N +A +A+ +NG P + +
Sbjct: 175 ELFSPFGEILECKVMIDQNGNSKLAGFVRFCNEADATKAMQAMNGTKMKDSPAPLVVKYA 234
Query: 237 KRERTSYLR 245
E LR
Sbjct: 235 DNEHQKSLR 243
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 155 EILDK---NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDE 211
++L+K N++VK + ++ + EL FS G + S K+M +G S G+GFV FS+P E
Sbjct: 62 DLLEKDQTNVFVKYLPNEYGDYELFTLFSPFGKVMSAKVMVDAKGNSYGYGFVRFSSPSE 121
Query: 212 ANRAINTLNGI-LFHQK 227
+ +AI+ ++G L H+K
Sbjct: 122 SKKAIDNMDGFQLMHKK 138
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKL 114
F +L +D+ L+++FS+FG +QS +V+ +D G++KGYGFV++ ++ A+ ++ ++
Sbjct: 509 FVFHLPGFVDDSYLYKLFSRFGPLQSVRVITDKDTGENKGYGFVKFQNKDDAITSLNEM 567
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTL 219
L+V ++ VD+ L + FS+ G + SV+++ + G +KG+GFV F N D+A ++N +
Sbjct: 508 LFVFHLPGFVDDSYLYKLFSRFGPLQSVRVITDKDTGENKGYGFVKFQNKDDAITSLNEM 567
Query: 220 NGILFHQKPLYVAI 233
NG+ QK L V +
Sbjct: 568 NGLQVGQKYLKVKL 581
>gi|160331003|ref|XP_001712209.1| pab1 [Hemiselmis andersenii]
gi|159765656|gb|ABW97884.1| pab1 [Hemiselmis andersenii]
Length = 502
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 25/204 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL D+ L ++F FG I S KV + ++G S GYGFV + ++++ AIEK
Sbjct: 134 FIKNLPLFFDSKSLEKMFLDFGKILSCKVALDENGTSLGYGFVHFEDEKASKIAIEKTNG 193
Query: 117 ATVEGMELYA-PSL----RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
+ +++ P L R F N+Y+KN+ ++ +
Sbjct: 194 LIIGEKKIFVGPFLSRKDRKNFGMTKTGFTNIYIKNISP-----------------ENCN 236
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E +K F G I+S+ I + N +KGF FV + P+EA AI +N LYV
Sbjct: 237 ETFIKDLFDIFGKITSIYIPKNN-NFTKGFAFVNYELPEEAEDAIFRMNKKKIKNLTLYV 295
Query: 232 AIAQTKRERTSYL--RIMYAKQGP 253
A+TK ER +L + + K GP
Sbjct: 296 GKAETKIERQRHLQKKFLEKKIGP 319
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 18/176 (10%)
Query: 70 LHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKL-YAATVEGMELYAP 127
+ +IF G ++S K+ G+ GY FV++ + A A+ KL Y E M+
Sbjct: 56 IEKIFLTIGPLKSVKIYRDISSGEFMGYCFVEFENFKDAERALTKLNYYFDPEKMK---K 112
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS 187
LR Q+ D + N+++KN+ D L++ F G I S
Sbjct: 113 PLRLMWYQK-------------DKFLLKSGGGNIFIKNLPLFFDSKSLEKMFLDFGKILS 159
Query: 188 VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSY 243
K+ G S G+GFV F + + AI NG++ +K ++V ++++R ++
Sbjct: 160 CKVALDENGTSLGYGFVHFEDEKASKIAIEKTNGLIIGEKKIFVGPFLSRKDRKNF 215
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 4/186 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL +D+ +L +F G+++ +V+ + G+S+G+GFV S+ + A ++
Sbjct: 95 FVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFN 154
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+EG L S Q +SF+ E + LYV N++ VD + L
Sbjct: 155 GYELEGRALRVNS--GPPPQRESSFSRSPRFGGGGGGGESLEGNRLYVGNLSWSVDNLAL 212
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+ +FS+ G + K++ G S+GFGFV +S+ +E AI++LNG + + V++A
Sbjct: 213 ESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDGRAIRVSVA 272
Query: 235 QTKRER 240
+ + R
Sbjct: 273 EARPRR 278
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 149 DDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFS 207
D D + D L+V N+ +VD +L F G + V+++ G S+GFGFV S
Sbjct: 82 DGDESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS 141
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
+ DE A NG + L V + +S+ R
Sbjct: 142 SIDEVEAAAQQFNGYELEGRALRVNSGPPPQRESSFSR 179
>gi|440297981|gb|ELP90622.1| nucleolysin TIA-1, putative [Entamoeba invadens IP1]
Length = 305
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 11/175 (6%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVV-VSQDGKSKGYGFVQYSTQESAL 108
A +F F L + + N L+Q F+KFG + ++V+ SQ GKS+GYGFV + +E A
Sbjct: 121 AKGSFKLFVGGLHTEVTNEILYQNFAKFGRVSDARVLRYSQSGKSQGYGFVTFIRKEDAE 180
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI--LDKNLYVKNI 166
A++ + ++G + + G + + VK D+++ E + N+YV I
Sbjct: 181 TAMQMMNGEKIQGRTV---KVNWGTATQKPTET---VKRGFDEISRETSNTNNNVYVGGI 234
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ +E +++ F G I +KIMRT+ K +GFV F + D A +AI LNG
Sbjct: 235 PKETEESTMRKLFGDFGEIIDLKIMRTD--AEKAYGFVRFVSHDNATKAIMMLNG 287
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L ++D L +IFS G + S K++ + G YGF+++ +A A E + V
Sbjct: 46 LHESVDETLLSRIFSIVGHVVSCKIMKDKTGTHARYGFIEFIDHTTAEFAKENMNGRLVY 105
Query: 121 GMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFS 180
G EL + SF L+V L +VT EIL +N F+
Sbjct: 106 GKELKVNWTHDSQSDAKGSF-KLFVGGLHTEVTNEILYQN------------------FA 146
Query: 181 QCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNG 221
+ G +S +++R + G S+G+GFV F ++A A+ +NG
Sbjct: 147 KFGRVSDARVLRYSQSGKSQGYGFVTFIRKEDAETAMQMMNG 188
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
K+++V +++ VDE L + FS G + S KIM+ G +GF+ F + A A
Sbjct: 39 KSVHVAGLHESVDETLLSRIFSIVGHVVSCKIMKDKTGTHARYGFIEFIDHTTAEFAKEN 98
Query: 219 LNGILFHQKPLYV 231
+NG L + K L V
Sbjct: 99 MNGRLVYGKELKV 111
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL +D+ KL +F + G ++ ++V+ +++ +S+G+GFV ST E A NA+EK
Sbjct: 127 FVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFS 186
Query: 116 AATVEG--MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+G + + S R R + ++ E L ++YV N+ DVD
Sbjct: 187 RYDFDGRLLTVNKASPRGTRPERPPPRHSF----------EPSL--SIYVGNLPWDVDNT 234
Query: 174 ELKQYFSQCGIISSVKIM--RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
L+Q FS+ G + + +++ R R S+GFGFV S+ E A+ L+G +P+ V
Sbjct: 235 RLEQIFSEHGNVVNARVVYDRETRR-SRGFGFVTMSDETEMKDAVAALDGQSLDGRPIRV 293
Query: 232 AIAQTKRERTSY 243
++A+ + R S+
Sbjct: 294 SVAEDRPRRGSF 305
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG-KSKGYGFVQYSTQESALNA 110
P+ + NL +DN +L QIFS+ G++ +++VV ++ +S+G+GFV S + +A
Sbjct: 218 PSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDA 277
Query: 111 IEKLYAATVEG 121
+ L +++G
Sbjct: 278 VAALDGQSLDG 288
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI--SKGFGFVCFSNPDEANRA 215
+ L+V N+ DVD +L F Q G + +++ NR S+GFGFV S +EA A
Sbjct: 123 EAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVI-YNRETDQSRGFGFVTMSTVEEAENA 181
Query: 216 INTLNGILFHQKPLYVAIAQTKRER 240
+ + F + L V A + R
Sbjct: 182 VEKFSRYDFDGRLLTVNKASPRGTR 206
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN ++ FS FG+I S KV ++ SKGYGFV + T+E+A NAI+K+
Sbjct: 104 FIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNG 163
Query: 117 ATVEGMELYAPSL--RAGRI----QESASFNNLYVKNLDDDVTEEILDKNLYVK 164
+ G +++ R+ R Q++ F N+Y+KN DD+ +E L + L V+
Sbjct: 164 MLLNGRKVFVGKFVPRSEREKQLGQKARRFMNVYIKNFGDDLDDEKLREMLRVR 217
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 31/195 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L + + L + FS G + S +V + S GY +V + A A++ +
Sbjct: 16 YVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDTMN 75
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
V+G + PSLR + N+++KN++
Sbjct: 76 FDMVKGRPIRIMWSQRDPSLRKSGVG------------------------NVFIKNLDKS 111
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D + FS G I S K+ SKG+GFV F + AN AI +NG+L + + +
Sbjct: 112 IDNKAMYDTFSAFGNILSCKVATDEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKV 171
Query: 230 YVAIAQTKRERTSYL 244
+V + ER L
Sbjct: 172 FVGKFVPRSEREKQL 186
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 20/101 (19%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
LYV ++++DV E L + FS G + S+++ R R + G+ +V F P +A RA++
Sbjct: 15 LYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSL--GYAYVNFQQPVDAERALD 72
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
T+N + +P +RIM++++ P L +
Sbjct: 73 TMNFDMVKGRP---------------IRIMWSQRDPSLRKS 98
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 14/203 (6%)
Query: 51 TPTFIP----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQE 105
TP++ P F NL ++D+ +L +IF GD++ +V+ + G+S+G+GFV S+
Sbjct: 77 TPSYSPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAA 136
Query: 106 SALNAIEKLYAATVEGMELYA-------PSLRAGRIQESASFNNLYVKNLDDDVTEEILD 158
A ++L V+G EL P R E+ F + + + D
Sbjct: 137 EVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDG-D 195
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAIN 217
++V N+ VD + L+ F + G + K++ G S+GFGFV FS+ DE + AI
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
TL+G + + + V+ A ++ +R
Sbjct: 256 TLDGADLNGRAIRVSPADSRPKR 278
>gi|452848411|gb|EME50343.1| hypothetical protein DOTSEDRAFT_69017 [Dothistroma septosporum
NZE10]
Length = 516
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL+ +D L + F +FG I++ +V+ +D G+SKGYG+V++ + + A A+E +
Sbjct: 256 FVGNLSWNVDEEWLTREFEEFGAIKAVRVITDRDSGRSKGYGYVEFESADDAAKALEARH 315
Query: 116 AATVEGMELY----APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
T++ EL P + Q +N K D T L+V NI+ D
Sbjct: 316 GYTLDNRELRVDLGTPRAQRNDGQTPQQRSNDRQKQYGD--TPSQPSATLFVGNISFDAT 373
Query: 172 EIELKQYFSQCGIISSVKIMRTNR--GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+ + + F + G I++V++ T+R G KGFG+V FS+ +EA A+ L G+ +P+
Sbjct: 374 QDMVTEVFQEYGSINAVRLP-TDRETGAPKGFGYVEFSSIEEAKSAMENLTGVDIAGRPI 432
Query: 230 YV 231
+
Sbjct: 433 RL 434
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR--GISKGFGFVCFSNPDEANRAIN 217
NL+V N++ +VDE L + F + G I +V+++ T+R G SKG+G+V F + D+A +A+
Sbjct: 254 NLFVGNLSWNVDEEWLTREFEEFGAIKAVRVI-TDRDSGRSKGYGYVEFESADDAAKALE 312
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+G + L V + + +R
Sbjct: 313 ARHGYTLDNRELRVDLGTPRAQR 335
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 22/191 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL +D+ KL +F + G ++ ++V+ +++ S+G+GFV ST E + A+E L+
Sbjct: 152 FVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKAVEMLH 211
Query: 116 AATVEG--MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
++G + + + R R + + + +YV N+ DVD
Sbjct: 212 RYDLDGRFLTVNKAAPRGSRPERPPRVSEPGYR--------------IYVGNLPWDVDSG 257
Query: 174 ELKQYFSQCGIISSVKIM---RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
L+Q FS+ G + S +++ TNR S+GFGFV S E N AI L+G +P+
Sbjct: 258 RLEQIFSEHGKVVSARVVFDRETNR--SRGFGFVTMSTESELNDAIAALDGQNLDGRPIR 315
Query: 231 VAIAQTKRERT 241
V +A+ + RT
Sbjct: 316 VNVAEERPRRT 326
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR--GISKGFGFVCFSNPDEANRA 215
+ ++V N+ DVD +L F Q G + +++ NR S+GFGFV S +E+ +A
Sbjct: 148 EAKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVI-YNRETDTSRGFGFVTMSTVEESEKA 206
Query: 216 INTLN 220
+ L+
Sbjct: 207 VEMLH 211
>gi|393242388|gb|EJD49906.1| hypothetical protein AURDEDRAFT_58748 [Auricularia delicata
TFB-10046 SS5]
Length = 782
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL++KN++ D+D L +F G I S ++MR +RG S+GFGFV F PD+A+RA+N +
Sbjct: 251 NLFIKNLDQDIDSNSLFSHFRHYGHIVSARVMRDDRGNSRGFGFVSFQTPDQASRAMNAM 310
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL 266
N K + V + + K+ R L YA S++ PTL
Sbjct: 311 NNARIGTKHIAVRLHEPKQLRQEKLAARYASNNGHPRSSSGATSPTL 357
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 46 HSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQE 105
HS + P + F NL ID+ L F +G I S++V+ G S+G+GFV + T +
Sbjct: 243 HSGLIDPCNL-FIKNLDQDIDSNSLFSHFRHYGHIVSARVMRDDRGNSRGFGFVSFQTPD 301
Query: 106 SALNAIEKLYAATV 119
A A+ + A +
Sbjct: 302 QASRAMNAMNNARI 315
>gi|315043566|ref|XP_003171159.1| RNA-binding protein rsd1 [Arthroderma gypseum CBS 118893]
gi|311344948|gb|EFR04151.1| RNA-binding protein rsd1 [Arthroderma gypseum CBS 118893]
Length = 589
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 15/186 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE--- 112
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+
Sbjct: 199 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAIQLTG 258
Query: 113 -KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
KL + A R R ++ S NN + I LYV NI+ +
Sbjct: 259 QKLLGIPIIAQLTEAEKNRQARNPDAHSSNN----------QQSIPFHRLYVGNIHFSIT 308
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E +L+ F G + V++ R G SKG+GFV F +P++A A+ +NG +P+ V
Sbjct: 309 ESDLQNVFEPFGELDFVQLQREEAGRSKGYGFVQFRDPNQAREALEKMNGFDLAGRPIRV 368
Query: 232 AIAQTK 237
+ K
Sbjct: 369 GLGNDK 374
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 31/183 (16%)
Query: 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALN 109
T F F +L+S +DN KL + F FGD+ +KV+ + KSKGYGFV Y +E A
Sbjct: 130 TRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAER 189
Query: 110 AIEKLYAATVEGMELYAPSLRAGRI------QE------SASFNNLYVKNLDDDVTEEIL 157
AIE++ G L ++R QE SF+ +Y + D+ +
Sbjct: 190 AIEQM-----NGQWLGRRTIRTNWATRKPGDQEKPTHYNEKSFDEIYNQTSGDNTS---- 240
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+YV NI ++ E E++Q F+ G IS V+I + +G+ FV F N D A +AI
Sbjct: 241 ---VYVGNI-ANLSEDEIRQAFASYGRISEVRIFKM-----QGYAFVKFDNKDAAAKAIV 291
Query: 218 TLN 220
+N
Sbjct: 292 QMN 294
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Query: 73 IFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL-----YAP 127
+F++ G + +KV+ DG + Y FV++ A A++ + + E+ P
Sbjct: 63 LFNQIGSVTKTKVIF--DGANDPYAFVEFLDHSQASQALQTMNKRLLLDREMKVNWAVEP 120
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS 187
+ ++ + F+ ++V +++ +VD +L++ F G +S
Sbjct: 121 GQQPSKVDTTRHFH-------------------VFVGDLSSEVDNQKLREAFQPFGDVSD 161
Query: 188 VKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
K++R TN SKG+GFV + +EA RAI +NG ++ + A K
Sbjct: 162 AKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 212
>gi|111226286|ref|XP_001134510.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|122096694|sp|Q1ZXC2.1|PAP1B_DICDI RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein, cytoplasmic 1-B
gi|90970453|gb|EAS66827.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 814
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 21/177 (11%)
Query: 71 HQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEK---LYAATVEG------ 121
++ ++FG+I+S + +GKSKG G V++ QE A + + L +T++G
Sbjct: 377 QELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSS 436
Query: 122 ----MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQ 177
+E+ + RI+ Y K + D +L++ NI++ +D +K+
Sbjct: 437 NGGTIEINGKPITIDRIKSKVERFTEYRK--------KTTDLSLFINNIDESIDRDLIKE 488
Query: 178 YFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
F++ G I +KI++ +KGFGF+ FS EA +A+++LNG F K + V+ +
Sbjct: 489 EFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFS 545
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 37/207 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +DN L+ FS FG+I S KV + G SKGYG+V + T +SA AIEK+
Sbjct: 277 FVKNLEKGVDNAMLYDTFSSFGNILSCKVEF-EKGISKGYGYVHFETNDSAEKAIEKVNG 335
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G + +++ N ++ +N D+ +T EIL + EL
Sbjct: 336 TLILGKPINVERF-VSKVERYKVENKVFFRNADESITIEILQQ--------------ELS 380
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR--------AINTLNG------- 221
F G I S + G SKG G V F N ++A + I+T++G
Sbjct: 381 NRF---GEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSN 437
Query: 222 ---ILFHQKPLYVAIAQTKRERTSYLR 245
I + KP+ + ++K ER + R
Sbjct: 438 GGTIEINGKPITIDRIKSKVERFTEYR 464
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYA 116
+LA+ ++ L+++FSK G + + V +D +S GY +V + A A++ L
Sbjct: 190 DLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNY 249
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G + RI S D + N++VKN+ VD L
Sbjct: 250 TLVHG--------KPCRIMWS----------YRDPTKRKTNVGNIFVKNLEKGVDNAMLY 291
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS G I S K+ +GISKG+G+V F D A +AI +NG L KP+ V +
Sbjct: 292 DTFSSFGNILSCKV-EFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVS 350
Query: 237 KRER 240
K ER
Sbjct: 351 KVER 354
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 18/102 (17%)
Query: 161 LYVKNINDDVDEIELKQYFSQCG--IISSVKIMR-TNRGISKGFGFVCFSNPDEANRAIN 217
LYV ++ DV+EI L + FS+ G I+S+ + R +N S G+ +V F N +A RA++
Sbjct: 186 LYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALD 245
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTN 259
TLN L H KP RIM++ + P TN
Sbjct: 246 TLNYTLVHGKP---------------CRIMWSYRDPTKRKTN 272
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ +ID + + F+K G I K+V ++ ++KG+GF+ +S + A A++ L
Sbjct: 473 FINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNKGFGFISFSEIQEAQKALDSLNG 532
Query: 117 AT 118
T
Sbjct: 533 FT 534
>gi|326471726|gb|EGD95735.1| RNA splicing factor [Trichophyton tonsurans CBS 112818]
Length = 592
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 15/186 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE--- 112
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+
Sbjct: 202 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAIQLTG 261
Query: 113 -KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
KL + A R R ++ S NN + I LYV NI+ +
Sbjct: 262 QKLLGIPIIAQLTEAEKNRQARNPDAHSNNN----------QQSIPFHRLYVGNIHFSIT 311
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E +L+ F G + V++ R G SKG+GFV F +P++A A+ +NG +P+ V
Sbjct: 312 ESDLQNVFEPFGELDFVQLQREEAGRSKGYGFVQFRDPNQAREALEKMNGFDLAGRPIRV 371
Query: 232 AIAQTK 237
+ K
Sbjct: 372 GLGNDK 377
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor
gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 100/196 (51%), Gaps = 3/196 (1%)
Query: 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALN 109
+P F NL + D+ L ++F + G+++ +V+ + G+S+G+GFV S++E
Sbjct: 84 SPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEA 143
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASF-NNLYVKNLDDDVTEEILDKNLYVKNIND 168
A ++ ++G L S +E++SF N + +YV N+
Sbjct: 144 ACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAW 203
Query: 169 DVDEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
VD+ L+ FS+ G + K++ + G S+GFGFV +S+ +E N AI +L+G+ + +
Sbjct: 204 GVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGR 263
Query: 228 PLYVAIAQTKRERTSY 243
+ V+ A+ + R +
Sbjct: 264 AIRVSPAEARPPRRQF 279
>gi|326485177|gb|EGE09187.1| RNA splicing factor [Trichophyton equinum CBS 127.97]
Length = 560
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 15/186 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE--- 112
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+
Sbjct: 170 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAIQLTG 229
Query: 113 -KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
KL + A R R ++ S NN + I LYV NI+ +
Sbjct: 230 QKLLGIPIIAQLTEAEKNRQARNPDAHSNNN----------QQSIPFHRLYVGNIHFSIT 279
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E +L+ F G + V++ R G SKG+GFV F +P++A A+ +NG +P+ V
Sbjct: 280 ESDLQNVFEPFGELDFVQLQREEAGRSKGYGFVQFRDPNQAREALEKMNGFDLAGRPIRV 339
Query: 232 AIAQTK 237
+ K
Sbjct: 340 GLGNDK 345
>gi|52221255|gb|AAU29548.1| poly(A)-binding protein [Crithidia fasciculata]
Length = 564
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120
L ++D + L ++F K+G + + + + G+S+GY + + +ESA++A++++ +
Sbjct: 102 LPKSVDTFALKEMFGKYGRLTAIGLACDERGESRGYARISFEREESAVDAVKEM-----D 156
Query: 121 GMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFS 180
GME+ ++ R Q A + +K NLYVKN+ V + +L+ +F+
Sbjct: 157 GMEMDGQAIVVERYQ--AQHRDEMLKQF----------TNLYVKNLEPTVTDSKLRAFFA 204
Query: 181 QCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRAINTLNG 221
+ G +SS K+ S+ GFG+V F ++A +A+ LNG
Sbjct: 205 KYGEVSSAKVRDLGDAQSEVGFGYVAFEKHEDAAKAVEELNG 246
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 107/259 (41%), Gaps = 62/259 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK-GYGFVQYSTQESALNAIEKLY 115
+ NL T+ + KL F+K+G++ S+KV D +S+ G+G+V + E A A+E+L
Sbjct: 186 YVKNLEPTVTDSKLRAFFAKYGEVSSAKVRDLGDAQSEVGFGYVAFEKHEDAAKAVEELN 245
Query: 116 AATVEGMELYAPSLRAGRIQES------------------ASFNNLYVKNLDDDVTEEIL 157
E + AP L R + + + NLYVK DD VT E
Sbjct: 246 GKECEIAKAGAP-LDVSRFRSREERQRDRERQRRERAQQHSKYPNLYVKGFDDTVTSE-- 302
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAI 216
L++ F + G SV +M + G+S+ FGFV + A+ AI
Sbjct: 303 ----------------RLEELFQRYGETVSVTVMTDKDTGMSRCFGFVSMKDQGAASHAI 346
Query: 217 NTLNGILF-HQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQ 275
LNG F +PL+V A K R L +KQ ++ Q
Sbjct: 347 QDLNGSTFLSPRPLFVTYALRKDARRQNLE-ERSKQ-------------------FRMRQ 386
Query: 276 AP--GFRHGGMIPNGFSSP 292
P G GGM P GF P
Sbjct: 387 NPMNGPNMGGMPPMGFMGP 405
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 22/193 (11%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
L ++ KL+ F + G + S +V V S KS GYG+V + A A+++
Sbjct: 15 LDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAEKALDQA----- 69
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G +L LR +IQ S V N+ VK + VD LK+ F
Sbjct: 70 -GAKLGTRFLRIAKIQRDPSKRRSGVNNI-------------LVKKLPKSVDTFALKEMF 115
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI--AQTK 237
+ G ++++ + RG S+G+ + F + A A+ ++G+ + + V AQ +
Sbjct: 116 GKYGRLTAIGLACDERGESRGYARISFEREESAVDAVKEMDGMEMDGQAIVVERYQAQHR 175
Query: 238 RERTSYLRIMYAK 250
E +Y K
Sbjct: 176 DEMLKQFTNLYVK 188
>gi|302499164|ref|XP_003011578.1| hypothetical protein ARB_02131 [Arthroderma benhamiae CBS 112371]
gi|291175130|gb|EFE30938.1| hypothetical protein ARB_02131 [Arthroderma benhamiae CBS 112371]
Length = 594
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 15/186 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE--- 112
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+
Sbjct: 204 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAIQLTG 263
Query: 113 -KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
KL + A R R ++ S NN + I LYV NI+ +
Sbjct: 264 QKLLGIPIIAQLTEAEKNRQARNPDAHSNNN----------QQSIPFHRLYVGNIHFSIT 313
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E +L+ F G + V++ R G SKG+GFV F +P++A A+ +NG +P+ V
Sbjct: 314 ESDLQNVFEPFGELDFVQLQREEAGRSKGYGFVQFRDPNQAREALEKMNGFDLAGRPIRV 373
Query: 232 AIAQTK 237
+ K
Sbjct: 374 GLGNDK 379
>gi|384248056|gb|EIE21541.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 537
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 36/250 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-- 114
F L+ + + L ++F + G + S+ V+ G S+G+GFV ++ + A AI++
Sbjct: 27 FVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTKADEADRAIQQFNK 86
Query: 115 ---YAAT--VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNIND 168
A T V E P +AG+ V+E+ LD NL+++ +
Sbjct: 87 IPHCAGTWLVRKAEKRKPEQKAGQ------------------VSEQGLDLCNLFIRGVEP 128
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
++ I L+ F G + S KI+ + G SK GF+ F+ P+EA RAI+ +NG K
Sbjct: 129 EISSIRLQSMFEAFGKVVSSKILVDPKTGASKCAGFLRFTLPEEAARAIHEMNGKQVGSK 188
Query: 228 PLYVAIAQTKRERTSYLRIMYA--KQGPGLASTN------FPVHPTLYQRALQVYQAPGF 279
L+V +AQ KR T I++ +Q ST P+ Q + P F
Sbjct: 189 RLFVTLAQ-KRATTDPQGIIHPPFEQSAAQPSTPTGMAYFMPMSGMAPQYPQGAHGHPAF 247
Query: 280 RHGGMIPNGF 289
+ GM P G
Sbjct: 248 QPYGMYPPGM 257
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
+++V ++ +V LK+ F + G ++S +MR + G S+GFGFV F+ DEA+RAI
Sbjct: 25 SVFVNGLSLEVSSETLKEVFGRVGRVASAVVMRDHFGASRGFGFVNFTKADEADRAIQQF 84
Query: 220 NGI 222
N I
Sbjct: 85 NKI 87
>gi|198425734|ref|XP_002119812.1| PREDICTED: similar to HUC, partial [Ciona intestinalis]
Length = 408
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 27/185 (14%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
L T+ + + +Q+F+ G + S++++ Q G S GYGFV Y E A AI++L +
Sbjct: 90 LPQTLSDQEFYQLFNNVGAVTSARIIRDKQSGYSFGYGFVDYVKPEDADKAIQQLNGHPI 149
Query: 120 EGMEL-YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+ + A S AG A N+ NLYV +N D E LKQ
Sbjct: 150 QHKTIKVAFSKPAG-----ADSKNI----------------NLYVAGLNPDTSEESLKQR 188
Query: 179 FSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ---KPLYVAIA 234
FS G I ++++ N + G GFV F+ DEA AI LNG +F Q PL V A
Sbjct: 189 FSSYGTIIQTRVLKDKNTNLCSGIGFVLFNTKDEAMAAIKALNGAVFSQASTSPLVVKFA 248
Query: 235 QTKRE 239
+T ++
Sbjct: 249 KTDQK 253
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINT 218
NL V + + + E Q F+ G ++S +I+R + G S G+GFV + P++A++AI
Sbjct: 84 NLIVNYLPQTLSDQEFYQLFNNVGAVTSARIIRDKQSGYSFGYGFVDYVKPEDADKAIQQ 143
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG K + VA ++
Sbjct: 144 LNGHPIQHKTIKVAFSK 160
>gi|221486340|gb|EEE24601.1| splicing factor, putative [Toxoplasma gondii GT1]
Length = 576
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 27/189 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ NL S +D+ L ++F + G +++ V V +D G +GYGFV++ N ++
Sbjct: 32 YIGNLDSQVDDDLLWELFVQCGPVRT--VSVPRDKLTGNHQGYGFVEFR------NEVDA 83
Query: 114 LYAATVEGM-ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
YA + M +LY +LR + +SA +N D + N+++ N++ DVDE
Sbjct: 84 DYALKLMNMVKLYGKALR---LNKSAQDR----RNFD-------VGANVFLGNLDPDVDE 129
Query: 173 IELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ FS G I S KIMR G+S+GFGFV F + ++ A+ +NG +P++V
Sbjct: 130 KTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHV 189
Query: 232 AIAQTKRER 240
+ A K R
Sbjct: 190 SYAYKKDTR 198
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPD 210
V E D LY+ N++ VD+ L + F QCG + +V + R G +G+GFV F N
Sbjct: 22 VYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEV 81
Query: 211 EANRAINTLNGILFHQKPLYV-AIAQTKR 238
+A+ A+ +N + + K L + AQ +R
Sbjct: 82 DADYALKLMNMVKLYGKALRLNKSAQDRR 110
>gi|302754352|ref|XP_002960600.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
gi|302771648|ref|XP_002969242.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300162718|gb|EFJ29330.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300171539|gb|EFJ38139.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
Length = 197
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 8/183 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ N+A +D+ L F+ G + +V+ + GKS+G+ FV ST+++A AIEKL
Sbjct: 21 YVGNIAWNVDSKMLADCFNGVGITELEEVMYDRMLGKSRGFAFVTLSTEDAAKTAIEKLD 80
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+EG L + R ++ + + +V NI VD+ L
Sbjct: 81 GHELEGRPLRVNYPQVPRGGGGFGGGFGTRPSIPANPAK------CFVANIPWSVDDQGL 134
Query: 176 KQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
+++FS G + +I+ G S+G GFV F+ PDEAN AI+ L+G + + VA+A
Sbjct: 135 QEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPDEANNAISALDGAELGGRSIRVALA 194
Query: 235 QTK 237
+
Sbjct: 195 TGR 197
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 153 TEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDE 211
+E + LYV NI +VD L F+ GI ++M G S+GF FV S D
Sbjct: 12 SEPAPNTKLYVGNIAWNVDSKMLADCFNGVGITELEEVMYDRMLGKSRGFAFVTLSTEDA 71
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKR 238
A AI L+G +PL V Q R
Sbjct: 72 AKTAIEKLDGHELEGRPLRVNYPQVPR 98
>gi|237833669|ref|XP_002366132.1| splicing factor, putative [Toxoplasma gondii ME49]
gi|211963796|gb|EEA98991.1| splicing factor, putative [Toxoplasma gondii ME49]
Length = 576
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 27/189 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ NL S +D+ L ++F + G +++ V V +D G +GYGFV++ N ++
Sbjct: 32 YIGNLDSQVDDDLLWELFVQCGPVRT--VSVPRDKLTGNHQGYGFVEFR------NEVDA 83
Query: 114 LYAATVEGM-ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
YA + M +LY +LR + +SA +N D + N+++ N++ DVDE
Sbjct: 84 DYALKLMNMVKLYGKALR---LNKSAQDR----RNFD-------VGANVFLGNLDPDVDE 129
Query: 173 IELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ FS G I S KIMR G+S+GFGFV F + ++ A+ +NG +P++V
Sbjct: 130 KTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHV 189
Query: 232 AIAQTKRER 240
+ A K R
Sbjct: 190 SYAYKKDTR 198
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPD 210
V E D LY+ N++ VD+ L + F QCG + +V + R G +G+GFV F N
Sbjct: 22 VYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEV 81
Query: 211 EANRAINTLNGILFHQKPLYV-AIAQTKR 238
+A+ A+ +N + + K L + AQ +R
Sbjct: 82 DADYALKLMNMVKLYGKALRLNKSAQDRR 110
>gi|327293227|ref|XP_003231310.1| RNA splicing factor [Trichophyton rubrum CBS 118892]
gi|326466426|gb|EGD91879.1| RNA splicing factor [Trichophyton rubrum CBS 118892]
Length = 592
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 15/186 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE--- 112
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+
Sbjct: 202 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAIQLTG 261
Query: 113 -KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
KL + A R R ++ S NN + I LYV NI+ +
Sbjct: 262 QKLLGIPIIAQLTEAEKNRQARNPDAHSNNN----------QQSIPFHRLYVGNIHFSIT 311
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E +L+ F G + V++ R G SKG+GFV F +P++A A+ +NG +P+ V
Sbjct: 312 ESDLQNVFEPFGELDFVQLQREETGRSKGYGFVQFRDPNQAREALEKMNGFDLAGRPIRV 371
Query: 232 AIAQTK 237
+ K
Sbjct: 372 GLGNDK 377
>gi|398409740|ref|XP_003856335.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
gi|339476220|gb|EGP91311.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
Length = 505
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 8/187 (4%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESAL 108
+ PT F N++ +D L + F +FG++ +++ +D G+SKG+G+V++S ++A
Sbjct: 238 SAPTGNLFVGNISWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEFSDPQNAK 297
Query: 109 NAIEKLYAATVEGMELYA--PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
A+E A ++G EL + R + + +N D T L+V NI
Sbjct: 298 KALEAKNGAELDGRELRLDFSTPRTNDGPGAGNKSNDRAARFGD--TTNAPAATLFVGNI 355
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNR--GISKGFGFVCFSNPDEANRAINTLNGILF 224
+ D DE + +YF + G I +V++ T+R G KGFG+V S+ +EA A L G
Sbjct: 356 SFDADENAITEYFQEHGTIKAVRLP-TDRETGAPKGFGYVEMSSIEEAQAAFTALQGADI 414
Query: 225 HQKPLYV 231
+P+ +
Sbjct: 415 AGRPIRL 421
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 146 KNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR--GISKGFGF 203
KN D V E NL+V NI+ +VDE L + F + G ++ V+I+ T+R G SKGFG+
Sbjct: 229 KNKTDAVDESAPTGNLFVGNISWNVDEEWLTREFEEFGELAGVRII-TDRDSGRSKGFGY 287
Query: 204 VCFSNPDEANRAINTLNGILFHQKPLYV 231
V FS+P A +A+ NG + L +
Sbjct: 288 VEFSDPQNAKKALEAKNGAELDGRELRL 315
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 22/190 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL +D+ L +F + G ++ S+V+ ++D +S+G+GFV ST E A A+EK
Sbjct: 116 FVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAKKAVEKFN 175
Query: 116 AATVEG----MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
V G + + AP R R + + + +YV N+ DVD
Sbjct: 176 RYEVNGRLLTVNIAAP--RGSRPERQPRQYDAAFR--------------IYVGNLPWDVD 219
Query: 172 EIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
L+Q FS+ G + +++ G S+GFGFV SN +E N AI L+G + +
Sbjct: 220 NDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIAALDGQNLEGRAIK 279
Query: 231 VAIAQTKRER 240
V +A+ + R
Sbjct: 280 VNVAEERPRR 289
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIIS-SVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
+ L+V N+ DVD L F Q G + S I + S+GFGFV S +EA +A+
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAKKAV 171
Query: 217 NTLNGILFHQKPLYVAIAQTKRER 240
N + + L V IA + R
Sbjct: 172 EKFNRYEVNGRLLTVNIAAPRGSR 195
>gi|221508124|gb|EEE33711.1| splicing factor, putative [Toxoplasma gondii VEG]
Length = 576
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 27/189 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEK 113
+ NL S +D+ L ++F + G +++ V V +D G +GYGFV++ N ++
Sbjct: 32 YIGNLDSQVDDDLLWELFVQCGPVRT--VSVPRDKLTGNHQGYGFVEFR------NEVDA 83
Query: 114 LYAATVEGM-ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
YA + M +LY +LR + +SA +N D + N+++ N++ DVDE
Sbjct: 84 DYALKLMNMVKLYGKALR---LNKSAQDR----RNFD-------VGANVFLGNLDPDVDE 129
Query: 173 IELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ FS G I S KIMR G+S+GFGFV F + ++ A+ +NG +P++V
Sbjct: 130 KTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIHV 189
Query: 232 AIAQTKRER 240
+ A K R
Sbjct: 190 SYAYKKDTR 198
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 152 VTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPD 210
V E D LY+ N++ VD+ L + F QCG + +V + R G +G+GFV F N
Sbjct: 22 VYERNQDATLYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEV 81
Query: 211 EANRAINTLNGILFHQKPLYV-AIAQTKR 238
+A+ A+ +N + + K L + AQ +R
Sbjct: 82 DADYALKLMNMVKLYGKALRLNKSAQDRR 110
>gi|226295167|gb|EEH50587.1| RNA splicing factor Pad-1 [Paracoccidioides brasiliensis Pb18]
Length = 600
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 208 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDEESVPLAIQ-LT 266
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDE 172
+ G+ + A Q + + N +N + +V+ I LYV NI+ + E
Sbjct: 267 GQKLLGIPIIA--------QLTEAEKNRQARNPEANVSGNQNSIPFHRLYVGNIHFSITE 318
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G + V++ + G S+G+GFV F +P++A A+ +NG +P+ V
Sbjct: 319 SDLQKVFEPFGELDFVQLQKEEGGRSRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVG 378
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNF 260
+ K S ++ QG G A NF
Sbjct: 379 LGNDKFTPESTANLLQRFQGQG-AHHNF 405
>gi|258575439|ref|XP_002541901.1| predicted protein [Uncinocarpus reesii 1704]
gi|237902167|gb|EEP76568.1| predicted protein [Uncinocarpus reesii 1704]
Length = 503
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 11/171 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL+ +D L F FG++ ++V +D G+S+G+G+V+++ E A A E
Sbjct: 268 FVGNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEFTNAEDAAKAFEAKK 327
Query: 116 AATVEGMEL---YAPSLR-AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
A ++G L YA + + AG ++ + K+ D + E L++ NI+ D
Sbjct: 328 GAELDGRPLNLDYANARQNAGGAKDRS---QARAKSFGDQTSPE--SDTLFIGNISFGAD 382
Query: 172 EIELKQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
E +++ FS G IS +++ G KGFG++ FS+ DEA A+N L G
Sbjct: 383 ENAIQETFSSYGTISGIRLPTDPESGRPKGFGYIQFSSVDEARSALNELQG 433
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 145 VKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR--GISKGFG 202
K D E NL+V N++ +VDE L+ F G +S V+I+ T+R G S+GFG
Sbjct: 251 TKKAKKDSDESNASANLFVGNLSWNVDEEWLRSEFESFGELSGVRIV-TDRDSGRSRGFG 309
Query: 203 FVCFSNPDEANRAINTLNGILFHQKPL 229
+V F+N ++A +A G +PL
Sbjct: 310 YVEFTNAEDAAKAFEAKKGAELDGRPL 336
>gi|385301748|gb|EIF45916.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 717
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 101/230 (43%), Gaps = 20/230 (8%)
Query: 40 IASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFV 99
+ +ID + P + L TI + L++IF +G++QS KV+ G SKGYGFV
Sbjct: 114 LETIDSEYKLNPPIHHLYIRGLLPTIRSEDLYKIFHPYGEVQSCKVIYDDYGFSKGYGFV 173
Query: 100 QYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK 159
+ + A AI+ L +V G L F N +V D EI
Sbjct: 174 NLANRMQADRAIKGLNGQSVAGNNL---------------FVNHHVSKTDRLKDMEIRRH 218
Query: 160 ---NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDEANRA 215
NLYVKNI + +L F++ G I SV + G +KG+GF+ F +A +A
Sbjct: 219 NYSNLYVKNIPPKYSKEDLSSLFNKFGTIDSVFLPHGENGEENKGYGFINFRYHKDAVQA 278
Query: 216 INTLNGILFHQK-PLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHP 264
+N + + ++ A+ KRER+ Y Y G P+ P
Sbjct: 279 EQEMNNFELQEGYKIEISRAERKRERSIYSEEAYHYGPIGYVPITAPLSP 328
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 26/120 (21%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR---------------------- 195
D NLY+ ++ + + +L++ FS G I S K++ R
Sbjct: 449 DSNLYITHLPLEFTDADLEKLFSSFGPIVSAKVITYQRNNKSGKMDQPIGSRDAKGKDPE 508
Query: 196 ---GISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIAQTKRERTSYLRIMYAKQ 251
G SKGFGFVCF P A++A+ +NG L L ++ AQ K + R+ + Q
Sbjct: 509 SLVGKSKGFGFVCFQKPVYASKALVAMNGYKLDSTHILNISFAQRKENKFERGRLRHYNQ 568
>gi|302664299|ref|XP_003023781.1| hypothetical protein TRV_02070 [Trichophyton verrucosum HKI 0517]
gi|291187796|gb|EFE43163.1| hypothetical protein TRV_02070 [Trichophyton verrucosum HKI 0517]
Length = 592
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 15/186 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE--- 112
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+
Sbjct: 202 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAIQLTG 261
Query: 113 -KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
KL + A R R ++ S NN + I LYV NI+ +
Sbjct: 262 QKLLGIPIIAQLTEAEKNRQARNPDAHSNNN----------QQSIPFHRLYVGNIHFSIT 311
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E +L+ F G + V++ R G SKG+GFV F +P++A A+ +NG +P+ V
Sbjct: 312 ESDLQNVFEPFGELDFVQLQREEAGRSKGYGFVQFRDPNQAREALEKMNGFDLAGRPIRV 371
Query: 232 AIAQTK 237
+ K
Sbjct: 372 GLGNDK 377
>gi|440632886|gb|ELR02805.1| hypothetical protein GMDG_05742 [Geomyces destructans 20631-21]
Length = 575
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 16/186 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE--- 112
F LA+ + + +L F K G ++ +++V + G+SKG G+V++ +ES AI+
Sbjct: 181 FVQQLAARLRSKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVAAAIQLTG 240
Query: 113 -KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
KL + A R R E AS N +I LYV NI+ +
Sbjct: 241 QKLLGIPIIAQLTEAEKNRQVRTAEPASNN-----------PNQIPFHRLYVGNIHFSIT 289
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
E +L+ F G + V++ + ++G S+G+GFV F +P +A A+ +NG +P+ V
Sbjct: 290 EGDLQNVFEPFGELEFVQLQKEDQGRSRGYGFVQFRDPHQAREALEKMNGFDLAGRPIRV 349
Query: 232 AIAQTK 237
+ K
Sbjct: 350 GLGNDK 355
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 8/192 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL T+D+ +L +F + G ++ +VV + G+S+G+GFV + E A+E+
Sbjct: 90 FVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVEQFN 149
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK--NLYVKNINDDVDEI 173
T +G L + +G F + + D LYV N++ VD
Sbjct: 150 GYTFQGRPL---RVNSGPPPPRDEFAPRTPRAMGGGGGGGSFDSANKLYVGNLSWGVDNS 206
Query: 174 ELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L+ FS+ G + K++ + G S+GFGFV + + DE N AI+ L+G+ + + V
Sbjct: 207 TLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQIRVT 266
Query: 233 IAQTK-RERTSY 243
+A++K RE+ +
Sbjct: 267 VAESKPREQRRF 278
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 22/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++D+ +L +F + G ++ +VV + G+S+G+GFV S+ E A A+E+
Sbjct: 80 FVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFN 139
Query: 116 AATVEGMELY----------APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
T +G L + RA R +V + +YV N
Sbjct: 140 GYTFQGRPLRVNCGPPPPRDGSAPRAPRGGGGGGGGGSFVDS----------GNKVYVGN 189
Query: 166 INDDVDEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILF 224
+ VD L+ FS+ G + K++ + G S+GFGFV + + +E N AI+ L+GI
Sbjct: 190 LAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISNLDGIDL 249
Query: 225 HQKPLYVAIAQTKRER 240
+ + V +A++K R
Sbjct: 250 DGRQIRVTVAESKPRR 265
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAI 216
D L+V N+ VD +L F Q G + V+++ G S+GFGFV S+ +EA A+
Sbjct: 76 DLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAV 135
Query: 217 NTLNGILFHQKPLYV 231
NG F +PL V
Sbjct: 136 EQFNGYTFQGRPLRV 150
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 98/189 (51%), Gaps = 12/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL +D+ KL +F + G ++ ++V+ +++ +S+G+GFV ST E A +A+EK
Sbjct: 112 FVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAESAVEKFN 171
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R + +++ + E L ++YV N+ DVD L
Sbjct: 172 RYDIDG--------RLLTVNKASPRGTRPERPPPRRSFESSL--SIYVGNLPWDVDNTRL 221
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
KQ FS+ G + + +++ G S+GFGFV S+ E N A+ L+G + + V++A
Sbjct: 222 KQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGESLDGRAIKVSVA 281
Query: 235 QTKRERTSY 243
+ + R S+
Sbjct: 282 EDRPRRGSF 290
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 149 DDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI--SKGFGFVCF 206
D+ E + L+V N+ DVD +L F Q G + +++ NR S+GFGFV
Sbjct: 99 DESFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIY-NRETDQSRGFGFVTM 157
Query: 207 SNPDEANRAINTLN 220
S +EA A+ N
Sbjct: 158 STVEEAESAVEKFN 171
>gi|296820488|ref|XP_002849949.1| RNA splicing factor Pad-1 [Arthroderma otae CBS 113480]
gi|238837503|gb|EEQ27165.1| RNA splicing factor Pad-1 [Arthroderma otae CBS 113480]
Length = 595
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 13/185 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 205 FVQQLAARLRTKELIAFFEKIGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAIQ-LT 263
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDE 172
+ G+ + A Q + + N +N D + I LYV NI+ + E
Sbjct: 264 GQKLLGIPIIA--------QLTEAEKNRQARNPDSHANSNHQAIPFHRLYVGNIHFSITE 315
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L+ F G + V++ R G SKG+GFV F +P++A A+ +NG +P+ V
Sbjct: 316 SDLQNVFEPFGELDFVQLQREEAGRSKGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVG 375
Query: 233 IAQTK 237
+ K
Sbjct: 376 LGNDK 380
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESAL 108
A P + N+ +I L +F FG++ ++ + G+SKGYGFVQ+ A
Sbjct: 297 QAIPFHRLYVGNIHFSITESDLQNVFEPFGELDFVQLQREEAGRSKGYGFVQFRDPNQAR 356
Query: 109 NAIEKLYAATVEGMELYAPSLRAG 132
A+EK+ G +L +R G
Sbjct: 357 EALEKM-----NGFDLAGRPIRVG 375
>gi|330802792|ref|XP_003289397.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
gi|325080515|gb|EGC34067.1| hypothetical protein DICPUDRAFT_80171 [Dictyostelium purpureum]
Length = 628
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 19/186 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F +L + + L ++FS +G++ SSKV++ G S GYGFV++S + AI++L
Sbjct: 97 FVKHLPNDFTDEDLAKLFSAYGNVISSKVMIDPKGNSYGYGFVRFSNPNESQAAIKELDG 156
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +L R+ S + NL KN + NL++K + DV + +L+
Sbjct: 157 FQFQNKKLLC------RL--SNLYTNLNSKNPSN---------NLFIKPLPADVTDEQLR 199
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK--PLYVAIA 234
+ F G I K+M G SK GFV F N EA AI+ +NGI + PL V A
Sbjct: 200 KLFEPYGKIVECKVMLDQNGQSKFAGFVRFFNDSEAASAIDAMNGIKITKDSYPLVVKYA 259
Query: 235 QTKRER 240
T++++
Sbjct: 260 DTEQQK 265
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 155 EILDK---NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDE 211
EIL+K N++VK++ +D + +L + FS G + S K+M +G S G+GFV FSNP+E
Sbjct: 87 EILEKDSTNIFVKHLPNDFTDEDLAKLFSAYGNVISSKVMIDPKGNSYGYGFVRFSNPNE 146
Query: 212 ANRAINTLNGILFHQKPLYVAIA 234
+ AI L+G F K L ++
Sbjct: 147 SQAAIKELDGFQFQNKKLLCRLS 169
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKL 114
F +L ID+ L Q+FS++G +QS +V+ +D G++KGYGFV++ +E A +++
Sbjct: 514 FVFHLPPFIDDAYLFQLFSQYGKLQSVRVITDKDTGENKGYGFVKFYNREDAFKCQKEM 572
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAI 216
D NL+V ++ +D+ L Q FSQ G + SV+++ + G +KG+GFV F N ++A +
Sbjct: 510 DTNLFVFHLPPFIDDAYLFQLFSQYGKLQSVRVITDKDTGENKGYGFVKFYNREDAFKCQ 569
Query: 217 NTLNGILFHQKPLYVAI 233
+NG K L V +
Sbjct: 570 KEMNGFRIGSKYLKVKL 586
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 29/195 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++D+ +L ++F GD+ +V+ Q G+S+G+ FV +TQ A A+EK
Sbjct: 116 FVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEKFN 175
Query: 116 AATVEGMEL------------YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYV 163
+G L +AP R G E S N + +V
Sbjct: 176 GYEYQGRTLRVNSGPPPPKDSFAP--RGGFRNEKPSGNYNSANRV-------------FV 220
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGI 222
N+ D++ L+Q FS G + K++ G S+GFGFV S+P E AI++L+G
Sbjct: 221 GNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGS 280
Query: 223 LFHQKPLYVAIAQTK 237
+ + V +A+TK
Sbjct: 281 DMDGRQIKVTLAETK 295
>gi|156064869|ref|XP_001598356.1| hypothetical protein SS1G_00444 [Sclerotinia sclerotiorum 1980]
gi|154691304|gb|EDN91042.1| hypothetical protein SS1G_00444 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 570
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 180 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPAAIQ-LT 238
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE--EILDKNLYVKNINDDVDEI 173
+ G+ + A Q + + N V+N + + +I LYV NI+ + E
Sbjct: 239 GQRLLGIPIIA--------QLTEAEKNRQVRNPEATTSNPNQIPFHRLYVGNIHFSITEA 290
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G + V++ + +G S+G+GFV F +P++A A+ +NG +P+ V +
Sbjct: 291 DLQNVFEPFGELEFVQLQKEEQGRSRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVGL 350
Query: 234 AQTK 237
K
Sbjct: 351 GNDK 354
>gi|225677677|gb|EEH15961.1| RNA-binding protein rsd1 [Paracoccidioides brasiliensis Pb03]
Length = 600
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 208 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDEESVPLAIQ-LT 266
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDE 172
+ G+ + A Q + + N +N + +V+ I LYV NI+ + E
Sbjct: 267 GQKLLGIPIIA--------QLTEAEKNRQARNPEANVSGNQNSIPFHRLYVGNIHFSITE 318
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G + V++ + G S+G+GFV F +P++A A+ +NG +P+ V
Sbjct: 319 SDLQKVFEPFGELDFVQLQKEEGGRSRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVG 378
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNF 260
+ K S ++ QG G A NF
Sbjct: 379 LGNDKFTPESTANLLQRFQGQG-AHHNF 405
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 22/190 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL +D+ L +F + G ++ S+V+ ++D +S+G+GFV ST E A A+EK
Sbjct: 116 FVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFN 175
Query: 116 AATVEGMELY----APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
+ V G L AP R R + + + +YV N+ DVD
Sbjct: 176 SFEVNGRRLTVNRAAP--RGSRPERQPRVYDAAFR--------------IYVGNLPWDVD 219
Query: 172 EIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
L++ FS+ G + +++ G S+GFGFV SN +E N AI L+G + +
Sbjct: 220 SGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIK 279
Query: 231 VAIAQTKRER 240
V +A+ + R
Sbjct: 280 VNVAEERTRR 289
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIIS-SVKIMRTNRGISKGFGFVCFSNPDEANRAI 216
+ L+V N+ DVD L F Q G + S I + S+GFGFV S +EA +A+
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 217 NTLNGILFHQKPLYVAIAQTKRER 240
N + + L V A + R
Sbjct: 172 EKFNSFEVNGRRLTVNRAAPRGSR 195
>gi|444732122|gb|ELW72434.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 291
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN++D +D+ L++ FS G I+S K+M G SKGFGF CFS P+EA +A+ +
Sbjct: 22 NLYVKNLDDGIDDASLRKEFSPFGTITSAKVMMEG-GCSKGFGFGCFSFPEEATKAVTEM 80
Query: 220 NGILFHQKPLYV 231
NG + KP V
Sbjct: 81 NGRIVATKPFIV 92
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114
+ NL ID+ L + FS FG I S+KV++ + G SKG+GF +S E A A+ ++
Sbjct: 24 YVKNLDDGIDDASLRKEFSPFGTITSAKVMM-EGGCSKGFGFGCFSFPEEATKAVTEM 80
>gi|295664082|ref|XP_002792593.1| RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278707|gb|EEH34273.1| RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 596
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 204 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDEESVPLAIQ-LT 262
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDE 172
+ G+ + A Q + + N +N + +V+ I LYV NI+ + E
Sbjct: 263 GQKLLGIPIIA--------QLTEAEKNRQARNPEANVSGNQNSIPFHRLYVGNIHFSITE 314
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G + V++ + G S+G+GFV F +P++A A+ +NG +P+ V
Sbjct: 315 SDLQKVFEPFGELDFVQLQKEEGGRSRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVG 374
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNF 260
+ K S ++ QG G A NF
Sbjct: 375 LGNDKFTPESTANLLQRFQGQG-AHHNF 401
>gi|154322639|ref|XP_001560634.1| hypothetical protein BC1G_00662 [Botryotinia fuckeliana B05.10]
gi|347837181|emb|CCD51753.1| hypothetical protein [Botryotinia fuckeliana]
Length = 570
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 180 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPAAIQ-LT 238
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE--EILDKNLYVKNINDDVDEI 173
+ G+ + A Q + + N V+N + + +I LYV NI+ + E
Sbjct: 239 GQRLLGIPIIA--------QLTEAEKNRQVRNPEATTSNPNQIPFHRLYVGNIHFSITES 290
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G + V++ + +G S+G+GFV F +P++A A+ +NG +P+ V +
Sbjct: 291 DLQNVFEPFGELEFVQLQKEEQGRSRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVGL 350
Query: 234 AQTK 237
K
Sbjct: 351 GNDK 354
>gi|324510042|gb|ADY44204.1| Nucleolysin TIAR [Ascaris suum]
Length = 367
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 9/170 (5%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIE 112
F F +LA+ IDN L F+ +G+I +KV+ Q KSKGYGFV + ++ESA AI
Sbjct: 134 FHVFVGDLATEIDNNALKAAFAAYGEISEAKVIRDPQTMKSKGYGFVSFPSKESAEKAIA 193
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVD 171
+ + ++ + A R SA + + D+ D ++YV N++
Sbjct: 194 GMNGQLIGRRQIR--TNWASRKPASAEEAHTKEQTFDEVFNATRADNTSVYVGNVHSSTT 251
Query: 172 EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
E +L++ F+ G IS V+I + +G+ FV ++ + A RAI +NG
Sbjct: 252 EEDLREAFASIGAISEVRIFK-----QQGYAFVRYATKEAATRAIMQMNG 296
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI-SKGFGFVCFSNPDEANRAINT 218
+++V ++ ++D LK F+ G IS K++R + + SKG+GFV F + + A +AI
Sbjct: 135 HVFVGDLATEIDNNALKAAFAAYGEISEAKVIRDPQTMKSKGYGFVSFPSKESAEKAIAG 194
Query: 219 LNGILFHQKPLYVAIAQTK 237
+NG L ++ + A K
Sbjct: 195 MNGQLIGRRQIRTNWASRK 213
>gi|336388468|gb|EGO29612.1| hypothetical protein SERLADRAFT_433578 [Serpula lacrymans var.
lacrymans S7.9]
Length = 802
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL+ KN++ ++D L +F Q G I S ++MR G S+GFGFV F PD+A+ A++ +
Sbjct: 268 NLFCKNLDPEIDSNGLFAHFRQFGQIVSARVMRNENGDSRGFGFVSFQTPDQASAAMHAM 327
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF 279
NG++F K L V + + K+ R L + G HP R+ +P
Sbjct: 328 NGMVFGSKQLVVRLHEPKQLRQEKLAQRFGHNG----------HP----RSASGATSPTA 373
Query: 280 RHGGMIPNGFSSP 292
GG G+SSP
Sbjct: 374 SEGGESYVGWSSP 386
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 46 HSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQE 105
HS + P + F NL ID+ L F +FG I S++V+ +++G S+G+GFV + T +
Sbjct: 260 HSGLIDPCNL-FCKNLDPEIDSNGLFAHFRQFGQIVSARVMRNENGDSRGFGFVSFQTPD 318
Query: 106 SALNAIEKL 114
A A+ +
Sbjct: 319 QASAAMHAM 327
>gi|225561416|gb|EEH09696.1| RNA splicing factor Pad-1 [Ajellomyces capsulatus G186AR]
Length = 584
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 192 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAIQ-LT 250
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDE 172
+ G+ + A Q + + N +N + +V+ I LYV NI+ + E
Sbjct: 251 GQKLLGIPIIA--------QLTEAEKNRQARNPEANVSGNQNSIPFHRLYVGNIHFSITE 302
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G + V++ + G S+G+GFV F +P++A A+ +NG +P+ V
Sbjct: 303 SDLQKVFEPFGELDFVQLQKEEGGRSRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVG 362
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNF 260
+ K S ++ QG G A NF
Sbjct: 363 LGNDKFTPESTANLLQRFQGQG-AHHNF 389
>gi|154282581|ref|XP_001542086.1| hypothetical protein HCAG_02257 [Ajellomyces capsulatus NAm1]
gi|150410266|gb|EDN05654.1| hypothetical protein HCAG_02257 [Ajellomyces capsulatus NAm1]
Length = 585
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 193 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAIQ-LT 251
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDE 172
+ G+ + A Q + + N +N + +V+ I LYV NI+ + E
Sbjct: 252 GQKLLGIPIIA--------QLTEAEKNRQARNPEANVSGNQNSIPFHRLYVGNIHFSITE 303
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G + V++ + G S+G+GFV F +P++A A+ +NG +P+ V
Sbjct: 304 SDLQKVFEPFGELDFVQLQKEEGGRSRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVG 363
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNF 260
+ K S ++ QG G A NF
Sbjct: 364 LGNDKFTPESTANLLQRFQGQG-AHHNF 390
>gi|336375409|gb|EGO03745.1| hypothetical protein SERLA73DRAFT_102011 [Serpula lacrymans var.
lacrymans S7.3]
Length = 808
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL+ KN++ ++D L +F Q G I S ++MR G S+GFGFV F PD+A+ A++ +
Sbjct: 274 NLFCKNLDPEIDSNGLFAHFRQFGQIVSARVMRNENGDSRGFGFVSFQTPDQASAAMHAM 333
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF 279
NG++F K L V + + K+ R L + G HP R+ +P
Sbjct: 334 NGMVFGSKQLVVRLHEPKQLRQEKLAQRFGHNG----------HP----RSASGATSPTA 379
Query: 280 RHGGMIPNGFSSP 292
GG G+SSP
Sbjct: 380 SEGGESYVGWSSP 392
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 46 HSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQE 105
HS + P + F NL ID+ L F +FG I S++V+ +++G S+G+GFV + T +
Sbjct: 266 HSGLIDPCNL-FCKNLDPEIDSNGLFAHFRQFGQIVSARVMRNENGDSRGFGFVSFQTPD 324
Query: 106 SALNAIEKL 114
A A+ +
Sbjct: 325 QASAAMHAM 333
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 21/210 (10%)
Query: 46 HSAMATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQ 104
AMA +F + N+ +T + KFG + S + +K + +
Sbjct: 179 REAMAAKSFRNIYIKNIKATATEVDMRTTLEKFGKVTSLFLAEHAPFLTK-FALAVFEEH 237
Query: 105 ESALNAIEKLYAATVEGMELYAPSL-------RAGRIQESASFNNLYVKNLDDDVTEEIL 157
E+A+ AI +L + G+ A L ++ R +E +LY +
Sbjct: 238 EAAVKAIAELNESEESGLTEEAVKLVVCRALSKSERDRERKKTASLYQNH---------- 287
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+NLYVK++ DD+ + +L++ F+ G I+S IMR + G +GF FVCF + A A+
Sbjct: 288 GRNLYVKHLPDDITDDKLREIFAPFGKITSCAIMRESNGSLRGFAFVCFEDKQHATAAMR 347
Query: 218 TLNGILFH--QKPLYVAIAQTKRERTSYLR 245
LNG +KPLYV+ A+ K R L+
Sbjct: 348 ELNGRSLESSKKPLYVSQAEQKDMRIRLLQ 377
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 22/189 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L + + L FS+ G + S KV + +G SKGYGFVQ+ T + A A++ +
Sbjct: 102 FVKKLDAAVSAKALQAAFSRCGRVLSCKVALDSEGHSKGYGFVQFETADGAKAALD-MNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
A V E+ E A F V+ +D + +N+Y+KNI E++++
Sbjct: 161 AKVGDSEV-----------EVAPF----VRRVDREAMAAKSFRNIYIKNIKATATEVDMR 205
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN-----GILFHQKPLYV 231
+ G ++S+ + ++K F F + A +AI LN G+ L V
Sbjct: 206 TTLEKFGKVTSLFLAEHAPFLTK-FALAVFEEHEAAVKAIAELNESEESGLTEEAVKLVV 264
Query: 232 AIAQTKRER 240
A +K ER
Sbjct: 265 CRALSKSER 273
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 70 LHQIFSKFGDIQSSKV---VVSQDGKSKGYGFVQYSTQESALNAIEKL-YAATVEGMELY 125
++ +FS + S KV + +Q +S GYG+V + T A I+ L + G +
Sbjct: 26 INNLFSSIAPVVSVKVCRDIATQ--RSLGYGYVNFQTTADAEKVIDALNFTGIAPGRYIR 83
Query: 126 APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGII 185
+Q + NN++VK LD V+ + L + FS+CG +
Sbjct: 84 VMFAIRDPLQRKSGANNIFVKKLDAAVSAKAL------------------QAAFSRCGRV 125
Query: 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
S K+ + G SKG+GFV F D A A++ +NG
Sbjct: 126 LSCKVALDSEGHSKGYGFVQFETADGAKAALD-MNG 160
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 14/203 (6%)
Query: 51 TPTFIP----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQE 105
TP++ P F +L ++D+ +L +IF GD++ +V+ + G+S+G+GFV S+
Sbjct: 77 TPSYSPNQRLFVGSLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAA 136
Query: 106 SALNAIEKLYAATVEGMELYA-------PSLRAGRIQESASFNNLYVKNLDDDVTEEILD 158
A ++L V+G EL P R E+ F + + + D
Sbjct: 137 EVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDG-D 195
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAIN 217
++V N+ VD + L+ F + G + K++ G S+GFGFV FS+ DE + AI
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
TL+G + + + V+ A ++ +R
Sbjct: 256 TLDGADLNGRAIRVSPADSRPKR 278
>gi|325090859|gb|EGC44169.1| RNA splicing factor [Ajellomyces capsulatus H88]
Length = 585
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 14/208 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 193 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAIQ-LT 251
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDE 172
+ G+ + A Q + + N +N + +V+ I LYV NI+ + E
Sbjct: 252 GQKLLGIPIIA--------QLTEAEKNRQARNPEANVSGNQNSIPFHRLYVGNIHFSITE 303
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G + V++ + G S+G+GFV F +P++A A+ +NG +P+ V
Sbjct: 304 SDLQKVFEPFGELDFVQLQKEEGGRSRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVG 363
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNF 260
+ K S ++ QG G A NF
Sbjct: 364 LGNDKFTPESTANLLQRFQGQG-AHHNF 390
>gi|429963232|gb|ELA42776.1| hypothetical protein VICG_00091 [Vittaforma corneae ATCC 50505]
Length = 528
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 29/204 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ KL++IF FG I S KV V +G+S+GYGFVQY T ESA AI L
Sbjct: 139 FVKNIPKEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADKAIADLRD 198
Query: 117 ATVEGMEL----YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
EG L + SLR + +S+S + + N++VKN + E
Sbjct: 199 EKFEGKTLSISRFDRSLRDQKHSDSSSSTSSFT--------------NVFVKNFPSSLTE 244
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL-NGILFHQK---- 227
+LK + G I S+ + + GF V F ++A +A+ L N +F +
Sbjct: 245 AKLKDILEKYGPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHNKHIFSLEECQD 304
Query: 228 ------PLYVAIAQTKRERTSYLR 245
P Y+ A+ ++ER +R
Sbjct: 305 SSVATCPFYIQKAERRKEREETIR 328
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 89/191 (46%), Gaps = 7/191 (3%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N S++ KL I K+G I S + +++ + G+ V + E A A+E L+
Sbjct: 234 FVKNFPSSLTEAKLKDILEKYGPICSIYLPLNEKSEPVGFACVNFEKAEDAAKAVENLHN 293
Query: 117 ATVEGMELYAPSLRAG------RIQESASFNNLYVKNLDDDVTEEILDKN-LYVKNINDD 169
+ +E S A + + K L+ + I KN LY+ +I +
Sbjct: 294 KHIFSLEECQDSSVATCPFYIQKAERRKEREETIRKQLEALSLKGINSKNNLYIAHIPET 353
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E E++ FS+ G I S+K+ +T+ +K FG++CF P+EA A ++G L L
Sbjct: 354 FSEDEIRDLFSKFGTIVSIKLQKTSSENNKQFGYICFKTPEEAAAAFEAMDGTLLDNSKL 413
Query: 230 YVAIAQTKRER 240
++ + K ER
Sbjct: 414 RISFYKAKNER 424
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 20/138 (14%)
Query: 95 GYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE 154
Y FV + + E A +EK T+ E+ L +G N++ +N
Sbjct: 92 SYAFVTFLSIEDAKRIVEKYNYTTLHDREMTLMILTSG---------NVFPENA------ 136
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANR 214
NL+VKNI + +L + F G I+S K+ + G S+G+GFV + + A++
Sbjct: 137 -----NLFVKNIPKEYTTKKLYEIFKDFGSIASCKVSVDSNGESRGYGFVQYETVESADK 191
Query: 215 AINTLNGILFHQKPLYVA 232
AI L F K L ++
Sbjct: 192 AIADLRDEKFEGKTLSIS 209
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 138/334 (41%), Gaps = 47/334 (14%)
Query: 47 SAMATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQ 104
AMA +F + N+ ++ + I +FG + S + +S+ + + V +
Sbjct: 180 EAMAAKSFRNIYIKNITASATEADVKAIVEEFGKVDS--LFLSEHARFPTKFALVAFEEH 237
Query: 105 ESALNAIEKLYAATVEGMELYAPSL-------RAGRIQESASFNNLYVKNLDDDVTEEIL 157
++A+ AI L + G+ A L ++ R +E +LY +
Sbjct: 238 QAAVQAIAALNESEESGLTEKAVKLVVCRALSKSERDREKKKAASLYQNH---------- 287
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+NLY+K++ DD+ + L++ F G I+S IM+ G KGF FVCF + A+ A+
Sbjct: 288 GRNLYIKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTLKGFAFVCFEDKQHASAALR 347
Query: 218 TLNG--ILFHQKPLYVAIAQTKRERTSYLRIMYA------KQGPGLAS--TNFPVH---- 263
+LNG + KPLYV+ A+ K R L+ A + P + + +P H
Sbjct: 348 SLNGHPLEHSAKPLYVSHAEQKDMRIRLLQQRRAAMRHQSRMAPLMNTFPQQWPRHPFPH 407
Query: 264 ---------PTLYQRALQVYQAPGFRHGGMIPNGFSSPPPSPLFLTRAGQAAANNLTNGN 314
P Q P R M P+ P P R QA
Sbjct: 408 MVPPMMPPPPPPNMGMPQFMSGPMIRRPVMEPHLMQGEPMRP--PNRYTQAREQYPPQQR 465
Query: 315 QRAAANNSMLAVASPDERKDILGQGLYPLVKKLK 348
Q N L+ SP+++K+ LG+ LY + L+
Sbjct: 466 QDGVDMN-YLSTLSPEQQKNYLGELLYSRILPLE 498
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 22/189 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L + I+ +L FSK G + S KV + G SKGYGFVQ+ T + A+E
Sbjct: 102 FVKKLDTAINAKELQAAFSKCGRVLSCKVALDSAGNSKGYGFVQFETADGTKAALE---- 157
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++ +S +V+ +D + +N+Y+KNI E ++K
Sbjct: 158 ------------MNGSKLGDSEVVVAPFVRRVDREAMAAKSFRNIYIKNITASATEADVK 205
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN-----GILFHQKPLYV 231
+ G + S+ + R +K F V F A +AI LN G+ L V
Sbjct: 206 AIVEEFGKVDSLFLSEHARFPTK-FALVAFEEHQAAVQAIAALNESEESGLTEKAVKLVV 264
Query: 232 AIAQTKRER 240
A +K ER
Sbjct: 265 CRALSKSER 273
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL-YAATVEGMELYAP 127
++ +FS + S KV +S GYG+V + T A I+ L Y G ++
Sbjct: 26 INNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKVIDALNYTGIAPGRQIRVM 85
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS 187
+Q + NN++VK LD + + EL+ FS+CG + S
Sbjct: 86 FSIRDPLQRKSGMNNVFVKKLDTAINAK------------------ELQAAFSKCGRVLS 127
Query: 188 VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
K+ + G SKG+GFV F D A+ +NG
Sbjct: 128 CKVALDSAGNSKGYGFVQFETADGTKAALE-MNG 160
>gi|402697279|gb|AFQ90827.1| polyA-binding protein cytoplasmic 1, partial [Chrysemys picta]
Length = 127
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 13/138 (9%)
Query: 79 DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESA 138
+I S KVV ++G SKGYGFV + TQE+A AIEK+ + +++ ++ + +E+
Sbjct: 1 NILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA- 58
Query: 139 SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGIS 198
L E N+Y+KN +D+D+ LK+ F SVK+M G S
Sbjct: 59 --------ELGARAKEFT---NVYIKNFGEDMDDERLKELFGXXXPALSVKVMTDESGKS 107
Query: 199 KGFGFVCFSNPDEANRAI 216
KGFGFV F ++A +A+
Sbjct: 108 KGFGFVSFERHEDAQKAV 125
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 185 ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
I S K++ G SKG+GFV F + A RAI +NG+L + + ++V ++++ER + L
Sbjct: 2 ILSXKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 60
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI 111
N +D+ +L ++F S KV+ + GKSKG+GFV + E A A+
Sbjct: 74 NFGEDMDDERLKELFGXXXPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 125
>gi|148693298|gb|EDL25245.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Mus musculus]
Length = 250
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 50 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 102
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+L +++ + S++ I D NLYV + + + E++Q FSQ
Sbjct: 103 KLQTKTIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQY 147
Query: 183 G-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
G II+S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 148 GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 194
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 39 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 98
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 99 LNGLKLQTKTIKVSYAR 115
>gi|403368329|gb|EJY83994.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 1042
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 33/203 (16%)
Query: 65 IDNWKLHQIFSKFGDIQSSKVVVSQDG--KSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
I + +L+++FS +G+I S+ ++ QD ++ GYGFV + E A A E ++ T +G+
Sbjct: 400 ITSEQLYEMFSPYGNIVSAVMMKKQDNPDENSGYGFVCFEDSEGARRACENMH--TKDGL 457
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+ + R++E VK L + + + NLYVKN + E ELK+YF +
Sbjct: 458 YVKRALKKQQRLEE--------VKRLSEKYKKSMQKFNLYVKNFPLETTETELKEYFQRF 509
Query: 183 GIISSVKIMRTNRGISK---------------------GFGFVCFSNPDEANRAINTLNG 221
G +++VKIMR ++ ++ GFGFV +++ + A +A
Sbjct: 510 GDVNNVKIMRKSKPQTQRSDDQIQKEDDNKLEQLPESLGFGFVSYTSAESAAKAKLEAKT 569
Query: 222 ILFHQKPLYVAIAQTKRERTSYL 244
LF + L V ++K R ++L
Sbjct: 570 QLFKDRLLIVCQYESKAVREAHL 592
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIE 112
++ F FG+I S+KV +S S+GYGFVQ++ +E A N I+
Sbjct: 255 FYEFFKSFGEIVSAKVSLSDGHLSRGYGFVQFAKEEQAQNVIQ 297
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ N+A+ + KFG + S + +S+ + V + E+A+ AI L
Sbjct: 191 YIKNIAAAATEADVKAAAEKFGKVNS--LFLSEHAPFPTKFALVAFEEHEAAVQAIAALN 248
Query: 116 AATVEGMELYAPSL-------RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+ G+ A L ++ R +E +LY + +NLYVK++ D
Sbjct: 249 ESEESGLTEKAAKLVVCRALSKSERDREKKKAASLYQNH----------GRNLYVKHLPD 298
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG--ILFHQ 226
D+ + +L++ F G I+S IM+ G KGF FVCF + A+ A+ +LNG + +
Sbjct: 299 DITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQPLEHSK 358
Query: 227 KPLYVAIAQTKRERTSYLR 245
KPLYV+ A+ K R L+
Sbjct: 359 KPLYVSHAEQKDMRIRLLQ 377
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L + I+ +L F+K G + S KV + G SKGYGFVQ+ T E A A++
Sbjct: 102 FVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALD---- 157
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++ +S +V+ +D +V +N+Y+KNI E ++K
Sbjct: 158 ------------MNGSKLGDSEVVVAPFVRRVDREVMAAKSFRNIYIKNIAAAATEADVK 205
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN-----GILFHQKPLYV 231
+ G ++S+ + + F V F + A +AI LN G+ L V
Sbjct: 206 AAAEKFGKVNSL-FLSEHAPFPTKFALVAFEEHEAAVQAIAALNESEESGLTEKAAKLVV 264
Query: 232 AIAQTKRER 240
A +K ER
Sbjct: 265 CRALSKSER 273
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 21/154 (13%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL-YAATVEGMELYAP 127
++ +FS + S KV +S GYG+V + T A I+ L Y G+++
Sbjct: 26 INNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKVIDALNYTGIAPGLQIRVM 85
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS 187
+Q + NN++VK LD + + EL+ F++CG + S
Sbjct: 86 FSIRDPLQRKSGMNNVFVKKLDTAINAK------------------ELQAAFTKCGRVLS 127
Query: 188 VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
K+ + G SKG+GFV F + A A++ +NG
Sbjct: 128 CKVALDSAGNSKGYGFVQFETAEGAKAALD-MNG 160
>gi|149020435|gb|EDL78240.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Rattus norvegicus]
Length = 251
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 51 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 103
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+L +++ + S++ I D NLYV + + + E++Q FSQ
Sbjct: 104 KLQTKTIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 183 G-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
G II+S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 149 GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 195
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 16/195 (8%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLYAAT 118
NL + D+ +L +F +FG ++S++VV +++ G S+G+ FV ST A AIEKL +
Sbjct: 108 NLPRSCDSAQLTHLFQEFGTVESAEVVRNEETGLSRGFAFVTMSTVIEAKAAIEKLQGSD 167
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY 178
+ G ++ + A + + YV+ L+ N+ V L+
Sbjct: 168 LGGRDMIV-NFPAAVLSRGNKTEDEYVET----------PYQLFAGNLAWSVKNEILRDL 216
Query: 179 FSQCGIISSVKIMRTNRG-ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV-AIAQT 236
FS+ G + K++ ++G + + FGFVC S+ E AI +LNG FH + L V + T
Sbjct: 217 FSEHGTVLGAKVVYNSKGGVPRAFGFVCLSSQSEMEAAIVSLNGKEFHGRNLVVRQVRPT 276
Query: 237 KRERTSYLRIMYAKQ 251
+E Y RI+ K+
Sbjct: 277 NKE--FYERILVVKE 289
>gi|268531322|ref|XP_002630787.1| Hypothetical protein CBG02484 [Caenorhabditis briggsae]
Length = 403
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 13/174 (7%)
Query: 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALN 109
T F F +L+S +DN KL + F FGD+ +KV+ + KSKGYGFV Y +E A
Sbjct: 128 TRHFHVFVGDLSSEVDNQKLREAFIPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAER 187
Query: 110 AIEKLYAATV--EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNI 166
AIE++ + + + + G ++ +++N K+ D+ + D ++YV NI
Sbjct: 188 AIEQMNGQWLGRRTIRTNWATRKPGDQEKPSNYNE---KSYDEVYNQTSGDNTSVYVGNI 244
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
++ E E++Q F+ G IS V+I + +G+ FV F N + A +AI +N
Sbjct: 245 -ANLTEDEIRQAFASYGRISEVRIFKM-----QGYAFVKFENKNAAAKAITEMN 292
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 27/171 (15%)
Query: 73 IFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL-----YAP 127
+F++ G + +KV+ DG + Y FV++S A A++ + + E+ P
Sbjct: 61 LFNQIGSVTKTKVI--HDGANDPYAFVEFSDHGQASQALQTMNKRLLHDREMKVNWAVEP 118
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS 187
+ +I + F+ ++V +++ +VD +L++ F G +S
Sbjct: 119 GQQPSKIDTTRHFH-------------------VFVGDLSSEVDNQKLREAFIPFGDVSD 159
Query: 188 VKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
K++R TN SKG+GFV + +EA RAI +NG ++ + A K
Sbjct: 160 AKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 210
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218
+ LYV N++ V E + F+Q G ++ K++ G + + FV FS+ +A++A+ T
Sbjct: 42 RTLYVGNLDPSVSEDFIATLFNQIGSVTKTKVIHD--GANDPYAFVEFSDHGQASQALQT 99
Query: 219 LNGILFHQKPLYVAIA 234
+N L H + + V A
Sbjct: 100 MNKRLLHDREMKVNWA 115
>gi|403370981|gb|EJY85363.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 1042
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 33/203 (16%)
Query: 65 IDNWKLHQIFSKFGDIQSSKVVVSQDG--KSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
I + +L+++FS +G+I S+ ++ QD ++ GYGFV + E A A E ++ T +G+
Sbjct: 400 ITSEQLYEMFSPYGNIVSAVMMKKQDNPDENSGYGFVCFEDSEGARRACENMH--TKDGL 457
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+ + R++E VK L + + + NLYVKN + E ELK+YF +
Sbjct: 458 YVKRALKKQQRLEE--------VKRLSEKYKKSMQKFNLYVKNFPLETTEAELKEYFQRF 509
Query: 183 GIISSVKIMRTNRGISK---------------------GFGFVCFSNPDEANRAINTLNG 221
G +++VKIMR ++ ++ GFGFV +++ + A +A
Sbjct: 510 GDVNNVKIMRKSKPQTQKSDDQVQKEDDNKLEQLPESLGFGFVSYTSAESAAKAKLEAKT 569
Query: 222 ILFHQKPLYVAIAQTKRERTSYL 244
LF + L V ++K R ++L
Sbjct: 570 QLFKDRLLIVCQYESKAVREAHL 592
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 62/251 (24%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129
++ F FG+I S+KV +S S+GYGFVQ++ +E A N I+ + ++ P
Sbjct: 255 FYEFFKSFGEIVSAKVSLSDGHLSRGYGFVQFAKEEQAQNVIQICDGKVILPLDSQKP-- 312
Query: 130 RAGRIQESASFNNLYVKNLDDD-------------------------------------- 151
++ + +S N ++ DD+
Sbjct: 313 HQAQLVDPSSVNLEQLEKPDDEISAFDDSKDQPSSKQNKSKKAMQPLKILPYVKAEKGAN 372
Query: 152 --------VTEEILDKNLYVKNIND-DVDEIELKQYFSQCGIISSVKIMRT--NRGISKG 200
VT + NL+VK D ++ +L + FS G I S +M+ N + G
Sbjct: 373 TGGSLGLGVTSKNQFNNLFVKQFKDPNITSEQLYEMFSPYGNIVSAVMMKKQDNPDENSG 432
Query: 201 FGFVCFSNPDEANRAINTLNGILFHQKP-LYVAIAQTKRERTSYLRIMYAK-----QGPG 254
+GFVCF + + A RA + H K LYV A K++R ++ + K Q
Sbjct: 433 YGFVCFEDSEGARRACENM-----HTKDGLYVKRALKKQQRLEEVKRLSEKYKKSMQKFN 487
Query: 255 LASTNFPVHPT 265
L NFP+ T
Sbjct: 488 LYVKNFPLETT 498
>gi|406866575|gb|EKD19615.1| RNA splicing factor [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 587
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 12/184 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 195 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPAAIQ-LT 253
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE--EILDKNLYVKNINDDVDEI 173
+ G+ + A Q + + N V+N + + +I LYV NI+ + E
Sbjct: 254 GQKLLGIPIIA--------QLTEAEKNRQVRNPEATSSNPNQIPFHRLYVGNIHFSITES 305
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L+ F G + V++ + +G S+G+GFV F +P +A A+ +NG +P+ V +
Sbjct: 306 DLQNVFEPFGELEFVQLQKEEQGRSRGYGFVQFRDPSQAREALEKMNGFDLAGRPIRVGL 365
Query: 234 AQTK 237
K
Sbjct: 366 GNDK 369
>gi|27229298|ref|NP_758827.1| ELAV-like protein 3 [Rattus norvegicus]
gi|34328053|ref|NP_034617.1| ELAV-like protein 3 [Mus musculus]
gi|3913870|sp|Q60900.1|ELAV3_MOUSE RecName: Full=ELAV-like protein 3; AltName: Full=Hu-antigen C;
Short=HuC
gi|1146120|gb|AAC52999.1| mHuC-L [Mus musculus]
gi|26006109|dbj|BAC41352.1| HuC [Rattus norvegicus]
gi|30354162|gb|AAH52097.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Mus musculus]
gi|148693297|gb|EDL25244.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_a [Mus musculus]
gi|149020436|gb|EDL78241.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C), isoform CRA_b [Rattus norvegicus]
Length = 367
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 51 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 103
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+L +++ + S++ I D NLYV + + + E++Q FSQ
Sbjct: 104 KLQTKTIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 183 G-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
G II+S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 149 GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 195
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 343
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+LNG ++ L V+ +K+ +
Sbjct: 344 SLNGYRLGERVLQVSFKTSKQHK 366
>gi|358412972|ref|XP_887465.4| PREDICTED: ELAV-like protein 3 isoform 8 [Bos taurus]
Length = 511
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 202 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 254
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+L +++ + S++ I D NLYV + + + E++Q FSQ
Sbjct: 255 KLQTKTIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQY 299
Query: 183 G-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
G II+S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 300 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 346
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 52/234 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESA------LN 109
+ L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ + A LN
Sbjct: 279 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 338
Query: 110 AIEKLYAATVEGMELYA-PSLRAGR---IQESASFNNLYVKNLDDDVTEEILDKNL---- 161
+ L AA ++ PS + G+ Q S Y L LD L
Sbjct: 339 GQKPLGAAEPITVKFANNPSQKTGQALLTQLYQSSARRYAGPLHHQTQRFRLDNLLNMAY 398
Query: 162 --------------------------------YVKNINDDVDEIELKQYFSQCGIISSVK 189
+V N++ + DE L Q F G +++VK
Sbjct: 399 GVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVK 458
Query: 190 IMR---TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
++R TN+ KGFGFV +N DEA AI +LNG ++ L V+ +K+ +
Sbjct: 459 VIRDFTTNK--CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 510
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 191 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 250
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 251 LNGLKLQTKTIKVSYAR 267
>gi|83773473|dbj|BAE63600.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 440
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 12/183 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL+ +D L F +FG++ +++ +D G+S+G+G+V+Y+ A A E
Sbjct: 198 FVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFEAKR 257
Query: 116 AATVEGMEL---YAPSLRAGRIQESASFNN---LYVKNLDDDVTEEILDKNLYVKNINDD 169
++G ++ YA A R E F + ++ D + E L+V NI
Sbjct: 258 DTEIDGRKINLDYATGRPANR--EQGGFQDRAQARARSFGDQASPE--SDTLFVGNIPFS 313
Query: 170 VDEIELKQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+E L + F Q G I +++ G KGFG+V FS+ +EA A N LNG +P
Sbjct: 314 ANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEAREAFNELNGAEIDGRP 373
Query: 229 LYV 231
+ +
Sbjct: 374 VRL 376
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAI 216
NL+V N++ +VDE L+ F + G +S V+IM + G S+GFG+V ++N +A +A
Sbjct: 196 NLFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAF 253
>gi|255944605|ref|XP_002563070.1| Pc20g05340 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587805|emb|CAP85863.1| Pc20g05340 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1257
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 104/238 (43%), Gaps = 22/238 (9%)
Query: 43 IDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYS 102
IDV T +I N T D L +F+K+G++ ++ + S+ + ++Q+
Sbjct: 879 IDVRIGAQTTVWI---TNYPPTADEDYLRNLFNKYGEVVDVRMPSLKFDTSRRFSYLQFD 935
Query: 103 TQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
T +A +A E +G L G Q++A Y + +Y
Sbjct: 936 TSSAAHHATELHGMRFEDGTRLSVKISDPG--QKTARTGPRYE------------GREIY 981
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
V NI D +E +L++ FS+ G I + I R G S+GFGFV FS D AN A+ +N
Sbjct: 982 VSNIAWDANEKDLRELFSKFGEIEKILIERKITGGSRGFGFVTFSTKDAANDAV-AMNDH 1040
Query: 223 LFHQKPLYVAIAQTKRERTSYLRIMYAKQGP---GLASTNFPVHPTLYQRALQVYQAP 277
+F +PL V IA T R + + I P G+ PV QR L + P
Sbjct: 1041 VFRSRPLRVEIATTDTRRGNQVVISRVASHPAHYGVRELEVPVGDHA-QRTLALMNVP 1097
>gi|392589258|gb|EIW78589.1| hypothetical protein CONPUDRAFT_156564 [Coniophora puteana
RWD-64-598 SS2]
Length = 796
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 112/284 (39%), Gaps = 65/284 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L + +L+ +F FG + S+++ Q G V++ +E A A E ++
Sbjct: 120 FVKQLPLGYTDSQLYDLFRPFGALSSARI---QSTFGTVNGIVEFWREEDARIAEEAMHC 176
Query: 117 ATVEGMEL-------------YAPSLRA----------------------GRIQESASFN 141
A VEG + +AP A R +
Sbjct: 177 ADVEGQNIAVQIYQSRRAAGGHAPEFNAHAPTFVPSGSVFPYPSPNQYSPSRASHYPPRS 236
Query: 142 NLYVKNLDDDV------------TEEILDK-NLYVKNINDDVDEIELKQYFSQCGIISSV 188
+++V V ++D NL+ KN++ ++D L +F Q G I S
Sbjct: 237 SVFVHGPGQQVQLAPPSGPGSSSHSGLIDPCNLFCKNLDPEIDSNGLFTHFRQFGQIVSA 296
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
++MR G S+GFGFV + PD+AN A++ +NG + K L V + + K+ R L +
Sbjct: 297 RVMRNENGESRGFGFVSYQTPDQANAALSAMNGTVIGSKQLVVRLHEPKQLRQEKLAQRF 356
Query: 249 AKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSP 292
G HP R+ +P GG GFSSP
Sbjct: 357 GHNG----------HP----RSASGATSPTVSEGGDSYLGFSSP 386
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 22/199 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ N+A+ + KFG + S + +S+ + V + E+A+ AI L
Sbjct: 191 YIKNIAAAATEADVKAAAEKFGKVNS--LFLSEHAPFPTKFALVAFEEHEAAVQAIAALN 248
Query: 116 AATVEGMELYAPSL-------RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+ G+ A L ++ R +E +LY + +NLYVK++ D
Sbjct: 249 ESEESGLTEKAAKLVVCRALSKSERDREKKKAASLYQNH----------GRNLYVKHLPD 298
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG--ILFHQ 226
D+ + L++ F G I+S IM+ G KGF FVCF + A+ A+ +LNG + +
Sbjct: 299 DITDDRLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRSLNGQPLEHSK 358
Query: 227 KPLYVAIAQTKRERTSYLR 245
KPLYV+ A+ K R L+
Sbjct: 359 KPLYVSHAEQKDMRIRLLQ 377
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L + I+ +L F+K G + S KV + G SKGYGFVQ+ T E A A++
Sbjct: 102 FVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALD---- 157
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ ++ +S +V+ +D +V +N+Y+KNI E ++K
Sbjct: 158 ------------MNGSKLGDSEVVVAPFVRRVDREVMAAKSFRNIYIKNIAAAATEADVK 205
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN-----GILFHQKPLYV 231
+ G ++S+ + + F V F + A +AI LN G+ L V
Sbjct: 206 AAAEKFGKVNSL-FLSEHAPFPTKFALVAFEEHEAAVQAIAALNESEESGLTEKAAKLVV 264
Query: 232 AIAQTKRER 240
A +K ER
Sbjct: 265 CRALSKSER 273
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL-YAATVEGMELYAP 127
++ +FS + S KV +S GYG+V + T A I+ L Y G ++
Sbjct: 26 INNLFSTVAPVVSVKVCRDMATQRSLGYGYVNFQTTADAEKVIDALNYTGIAPGRQIRVM 85
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS 187
+Q + NN++VK LD + + EL+ F++CG + S
Sbjct: 86 FSIRDPLQRKSGMNNVFVKKLDTAINAK------------------ELQAAFTKCGRVLS 127
Query: 188 VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221
K+ + G SKG+GFV F + A A++ +NG
Sbjct: 128 CKVALDSAGNSKGYGFVQFETAEGAKAALD-MNG 160
>gi|449296279|gb|EMC92299.1| hypothetical protein BAUCODRAFT_38330 [Baudoinia compniacensis UAMH
10762]
Length = 634
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 98/205 (47%), Gaps = 14/205 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F G + +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 250 FVQQLAARLRTKELQAFFEAVGPVVEAQIVKDRVSGRSKGVGYVEFKDEESVQKAIQ-LT 308
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE--ILDKNLYVKNINDDVDEI 173
+ G+ + A Q + + N ++ + T+ I LYV NI+ + E
Sbjct: 309 GQKLLGIPIIA--------QLTEAEKNRQARHTEGTATQSNGIPFHRLYVGNIHFSITED 360
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK F G + V++ + +G SKG+GFV F +P +A A+ +NG +P+ V +
Sbjct: 361 DLKNVFEPFGELEFVQLQKEEQGRSKGYGFVQFIDPAQAKEALEKMNGFELAGRPIRVGL 420
Query: 234 AQTK--RERTSYLRIMYAKQGPGLA 256
K E T L +A QG A
Sbjct: 421 GNDKFTPESTQSLLQRFASQGQAAA 445
>gi|389747628|gb|EIM88806.1| hypothetical protein STEHIDRAFT_93788 [Stereum hirsutum FP-91666
SS1]
Length = 903
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NL+ KN++ +D L Q+F + G I S ++MRT+ G S+GFGFV + PD+A A++ +
Sbjct: 309 NLFCKNLDASIDSNGLFQHFHRFGHIVSARVMRTDAGESRGFGFVSYQTPDQATAAMHAM 368
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLA-STNFPVHPTLYQRALQVYQAPG 278
NG + K L V + + K+ R L + G G ST+ PT + Y PG
Sbjct: 369 NGAVIGTKQLVVRLHEPKQLRQEKLAQRFGGAGNGHPRSTSGATSPTASEGGDSAYLGPG 428
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 46 HSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQE 105
HS + P + F NL ++ID+ L Q F +FG I S++V+ + G+S+G+GFV Y T +
Sbjct: 301 HSGLIDPCNL-FCKNLDASIDSNGLFQHFHRFGHIVSARVMRTDAGESRGFGFVSYQTPD 359
Query: 106 SALNAIEKLYAATVEGMEL 124
A A+ + A + +L
Sbjct: 360 QATAAMHAMNGAVIGTKQL 378
>gi|449329878|gb|AGE96146.1| polyadenylate-binding protein 2 [Encephalitozoon cuniculi]
Length = 502
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 37/211 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL L FS FG+I S KV + GKSKGYGFVQ+ +++A I+
Sbjct: 99 FVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNF-- 156
Query: 117 ATVEGM---------ELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
++++G+ ELY P ++ G ++ SA+F N ++KN D +E L + L
Sbjct: 157 SSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFTNCFIKNFPFDASEAELLELL----- 211
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL--- 223
+ G ++S+ + G KGF F F N + A AI L+G
Sbjct: 212 -------------ERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFG 258
Query: 224 ----FHQKPLYVAIAQTKRERTSYLRIMYAK 250
+ Y+ Q K ER LR M+ +
Sbjct: 259 AGRDGTGEAFYIQKGQRKEERAEELRKMFEQ 289
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 117/281 (41%), Gaps = 36/281 (12%)
Query: 76 KFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA---------ATVEGMELYA 126
++G + S V +GK KG+ F + ESALNAI+ L+ T E +
Sbjct: 213 RYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQK 272
Query: 127 PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGII 185
+ R +E F + ++ + KNLY+ NI + EL F + G I
Sbjct: 273 GQRKEERAEELRKMFEQMSMQG-------QSYKKNLYITNIPEGFGCEELGSIFKEFGNI 325
Query: 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
+S+ + K + ++C+S P+EA+ A+ N I L VA + K ER
Sbjct: 326 TSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLER----- 380
Query: 246 IMYAKQ-GPGLASTNFPVHPTLYQRALQVYQAPGF-----RHGGMIPNGFSSPPPSPLFL 299
M K+ G GL P P +Y + + + + GF R G P G L L
Sbjct: 381 -MKEKEFGGGLGYK--PGVPYMYNQGVS-FASSGFKRERNRGGAAKPYGNELEKLHSLVL 436
Query: 300 TRAG--QAAANNLTNGNQRAAANNSMLAV--ASPDERKDIL 336
A ++ + GN+ AN + A S +E KD++
Sbjct: 437 AAAPSFKSQWKDFGVGNEVEFANKVIRAFRSRSEEEIKDMI 477
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 28/185 (15%)
Query: 43 IDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYS 102
ID ++ + + L+ + L ++FS G + S K++ + S + FV +
Sbjct: 3 IDESKRASSDSLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFE 61
Query: 103 TQESALNAIEKLYAATVEGMELYAPSLRAGRIQESA-SFNNLYVKNLDDDVTEEILDKNL 161
+E A AI + + EL+ +R + E N++VKNL +D T + LD
Sbjct: 62 NEEDAERAIREY-----KHYELHNRQIRVMKKDERPPETGNIFVKNLPEDFTGKDLD--- 113
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI---NT 218
FS G I S K+ T+ G SKG+GFV F A + I ++
Sbjct: 114 ---------------DAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFSS 158
Query: 219 LNGIL 223
L+G+L
Sbjct: 159 LDGLL 163
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 15/191 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
F N +D+ KL +F + G ++ ++V+ + Q S+G+GFV +T E A +A+EK
Sbjct: 112 FVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESAVEKFN 171
Query: 116 AATVEGMELYA--PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
G L S + R + + + E +L +YV N+ +VD
Sbjct: 172 GYDYNGRSLVVNKASPKGSRPERTERAPRTF---------EPVL--RIYVANLAWEVDNS 220
Query: 174 ELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L+Q FS+ G I S +++ G S+GFGFV S+ E N AI L+G + + V+
Sbjct: 221 RLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVS 280
Query: 233 IAQTKRERTSY 243
+A+ + R S+
Sbjct: 281 VAEDRPRRGSF 291
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNA 110
P + NLA +DN +L Q+FS+ G I S++VV ++ G+S+G+GFV S + +A
Sbjct: 204 PVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDA 263
Query: 111 IEKLYAATVEG 121
I L ++EG
Sbjct: 264 IAALDGQSLEG 274
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAI 216
D L+V N DVD +L F Q G + +++ + +S+GFGFV + +EA A+
Sbjct: 108 DAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESAV 167
Query: 217 NTLNGILFHQKPLYVAIAQTKRER 240
NG ++ + L V A K R
Sbjct: 168 EKFNGYDYNGRSLVVNKASPKGSR 191
>gi|19074720|ref|NP_586226.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
gi|74697505|sp|Q8SR30.1|PABP_ENCCU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|19069362|emb|CAD25830.1| POLYADENYLATE-BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
Length = 502
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 37/211 (17%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL L FS FG+I S KV + GKSKGYGFVQ+ +++A I+
Sbjct: 99 FVKNLPEDFTGKDLDDAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNF-- 156
Query: 117 ATVEGM---------ELYAPSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNI 166
++++G+ ELY P ++ G ++ SA+F N ++KN D +E L + L
Sbjct: 157 SSLDGLLLGGNRIVVELYNPEIKKGESKKTSATFTNCFIKNFPFDASEAELLELL----- 211
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL--- 223
+ G ++S+ + G KGF F F N + A AI L+G
Sbjct: 212 -------------ERYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFG 258
Query: 224 ----FHQKPLYVAIAQTKRERTSYLRIMYAK 250
+ Y+ Q K ER LR M+ +
Sbjct: 259 AGRDGTGEAFYIQKGQRKEERAEELRKMFEQ 289
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 117/281 (41%), Gaps = 36/281 (12%)
Query: 76 KFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA---------ATVEGMELYA 126
++G + S V +GK KG+ F + ESALNAI+ L+ T E +
Sbjct: 213 RYGKVTSLFFPVKDNGKPKGFAFANFENHESALNAIKNLHGTFPFGAGRDGTGEAFYIQK 272
Query: 127 PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGII 185
+ R +E F + ++ + KNLY+ NI + EL F + G I
Sbjct: 273 GQRKEERAEELRKMFEQMSMQG-------QSYKKNLYITNIPEGFGCEELGSIFKEFGNI 325
Query: 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
+S+ + K + ++C+S P+EA+ A+ N I L VA + K ER
Sbjct: 326 TSISVGVDGANSQKQYAYICYSTPEEASIAVERGNEIYLDGNRLQVAYFKNKLER----- 380
Query: 246 IMYAKQ-GPGLASTNFPVHPTLYQRALQVYQAPGF-----RHGGMIPNGFSSPPPSPLFL 299
M K+ G GL P P +Y + + + + GF R G P G L L
Sbjct: 381 -MKEKEFGGGLGYK--PGVPYMYNQGVS-FASRGFKRERNRGGAAKPYGNELEKLHSLVL 436
Query: 300 TRAG--QAAANNLTNGNQRAAANNSMLAV--ASPDERKDIL 336
A ++ + GN+ AN + A S +E KD++
Sbjct: 437 AAAPSFKSQWKDFGVGNEVEFANKVIRAFRSRSEEEIKDMI 477
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 28/185 (15%)
Query: 43 IDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYS 102
ID ++ + + L+ + L ++FS G + S K++ + S + FV +
Sbjct: 3 IDESKRASSDSLTIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKRAEPVS-SFAFVTFE 61
Query: 103 TQESALNAIEKLYAATVEGMELYAPSLRAGRIQESA-SFNNLYVKNLDDDVTEEILDKNL 161
+E A AI + + EL+ +R + E N++VKNL +D T + LD
Sbjct: 62 NEEDAERAIREY-----KHYELHNRQIRVMKKDERPPETGNIFVKNLPEDFTGKDLD--- 113
Query: 162 YVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI---NT 218
FS G I S K+ T+ G SKG+GFV F A + I ++
Sbjct: 114 ---------------DAFSMFGEIVSCKVATTSHGKSKGYGFVQFKEKKAAKKVIKNFSS 158
Query: 219 LNGIL 223
L+G+L
Sbjct: 159 LDGLL 163
>gi|328875992|gb|EGG24356.1| RNA recognition motif-containing protein RRM [Dictyostelium
fasciculatum]
Length = 770
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F L + + +LH +F++FG + S+KV+V G S GYGFV++S+ + AIE
Sbjct: 91 FVKYLPNEFGDSELHNLFTQFGKVMSAKVMVDPKGNSYGYGFVRFSSPIESKLAIE---- 146
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
T++G +L L ++ N+ Y N NL+VK + + + +L+
Sbjct: 147 -TMDGKQLMHKKLLCRLSYLYSNHNSKYPSN------------NLFVKPLPATLTDGQLR 193
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF--HQKPLYVAIA 234
F G I K+M +G SK GFV F N +A +AI +NG PL V A
Sbjct: 194 DLFQGFGEIVECKVMVDKKGNSKLAGFVRFDNEADATKAIQAMNGAKMGADSTPLVVKYA 253
Query: 235 QTKRERT 241
+ +++
Sbjct: 254 DNEHQKS 260
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVK-IMRTNRGISKGFGFVCFSNPDEANRAI 216
D NL+V ++ VD++ L + FSQ G + SV+ IM G +KG+GFV F N D+A ++
Sbjct: 627 DTNLFVFHLPSFVDDVYLYKLFSQYGPLQSVRVIMDKETGENKGYGFVKFQNRDDAVTSL 686
Query: 217 NTLNGILFHQKPLYV 231
N +NG+ QK L V
Sbjct: 687 NQMNGMQVGQKYLKV 701
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N++VK + ++ + EL F+Q G + S K+M +G S G+GFV FS+P E+ AI T+
Sbjct: 89 NVFVKYLPNEFGDSELHNLFTQFGKVMSAKVMVDPKGNSYGYGFVRFSSPIESKLAIETM 148
Query: 220 NGI-LFHQK 227
+G L H+K
Sbjct: 149 DGKQLMHKK 157
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKL 114
F +L S +D+ L+++FS++G +QS +V++ ++ G++KGYGFV++ ++ A+ ++ ++
Sbjct: 631 FVFHLPSFVDDVYLYKLFSQYGPLQSVRVIMDKETGENKGYGFVKFQNRDDAVTSLNQM 689
>gi|355709046|gb|AES03463.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 102
Score = 75.5 bits (184), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
NLYVKN++D +D+ L++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +
Sbjct: 35 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEM 93
Query: 220 NGILFHQKP 228
NG + KP
Sbjct: 94 NGRIVATKP 102
Score = 48.1 bits (113), Expect = 0.006, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 37 YVKNLDDGIDDERLRKEFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEM 93
>gi|354475185|ref|XP_003499810.1| PREDICTED: ELAV-like protein 3 [Cricetulus griseus]
Length = 359
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+ +F GDI+S K+V + G+S GYGFV YS A AI T+ G++L
Sbjct: 53 EFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGLKLQTK 107
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-IIS 186
+++ + S++ I D NLYV + + + E++Q FSQ G II+
Sbjct: 108 TIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 152
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 153 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 194
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 39 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 98
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 99 LNGLKLQTKTIKVSYAR 115
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 335
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+LNG ++ L V+ +K+ +
Sbjct: 336 SLNGYRLGERVLQVSFKTSKQHK 358
>gi|341900388|gb|EGT56323.1| CBN-TIAR-1 protein [Caenorhabditis brenneri]
Length = 399
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALN 109
T F F +L+S +DN KL + F FGD+ +KV+ + KSKGYGFV Y +E A
Sbjct: 128 TRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAER 187
Query: 110 AIEKLYAATV--EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNI 166
AIE++ + + + + G ++ +N K+ D+ + D ++YV NI
Sbjct: 188 AIEQMNGQWLGRRTIRTNWATRKPGDQEKPVHYNE---KSYDEIYNQTSGDNTSVYVGNI 244
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
++ E +++Q F+ G IS V+I + +G+ FV F N D A +AI +N
Sbjct: 245 -ANLSEEDIRQAFASYGRISEVRIFKM-----QGYAFVKFDNKDAAAKAIVQMN 292
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 27/187 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL T+ + +F++ G + +KV+ DG + Y FV++S A A++ +
Sbjct: 45 YVGNLDPTVSEDFVATLFNQIGSVTKTKVIF--DGANDPYAFVEFSDHAQASQALQTMNK 102
Query: 117 ATVEGMEL-----YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
+ E+ P + +I + F+ ++V +++ +VD
Sbjct: 103 RLLLDREMKVNWAVEPGQQPSKIDTTRHFH-------------------VFVGDLSSEVD 143
Query: 172 EIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+L++ F G +S K++R TN SKG+GFV + +EA RAI +NG ++ +
Sbjct: 144 NQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 203
Query: 231 VAIAQTK 237
A K
Sbjct: 204 TNWATRK 210
>gi|19114339|ref|NP_593427.1| RNA-binding protein Mug28 [Schizosaccharomyces pombe 972h-]
gi|74698440|sp|Q9UT83.1|MUG28_SCHPO RecName: Full=Meiotically up-regulated gene 28 protein
gi|5706508|emb|CAB52270.1| RNA-binding protein Mug28 [Schizosaccharomyces pombe]
Length = 609
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 47/247 (19%)
Query: 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEK 113
F+ +NL + +L+ FS G I + S + Y V ST ES + IEK
Sbjct: 270 FVIGILNLPLKVSPVELYNEFSNHGHILGVAINQSINEDMTHYAEVAVSTYESCIEIIEK 329
Query: 114 LYAATVEG--MELYAPSLRAGRI-----QESASFNNLYVKNLDDDVTEEI---------- 156
+A EG ++L+ G + NL N++ EI
Sbjct: 330 FHAIAYEGSILQLFIKQPVQGFCSNLLNHPEGTMTNLLPPNMEMPQPFEIPVIAKTSALP 389
Query: 157 --------------------------LDK-NLYVKNINDDV--DEIELKQYFSQCGIISS 187
+D NL+VKN++D++ + +L++ FS+ G I S
Sbjct: 390 NPFISFPSFQTSYETTVTPTPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKS 449
Query: 188 VKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRI 246
+ + ISKG+GFV FS+P EA +AINTLNG+LF +K L+V A+ + +R L
Sbjct: 450 CTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKKRLSA 509
Query: 247 MYAKQGP 253
++++ P
Sbjct: 510 IFSQSYP 516
>gi|344240064|gb|EGV96167.1| ELAV-like protein 3 [Cricetulus griseus]
Length = 352
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+ +F GDI+S K+V + G+S GYGFV YS A AI T+ G++L
Sbjct: 46 EFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGLKLQTK 100
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-IIS 186
+++ + S++ I D NLYV + + + E++Q FSQ G II+
Sbjct: 101 TIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 145
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 146 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 187
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 32 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 91
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 92 LNGLKLQTKTIKVSYAR 108
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 271 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 328
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+LNG ++ L V+ +K+ +
Sbjct: 329 SLNGYRLGERVLQVSFKTSKQHK 351
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 93/198 (46%), Gaps = 26/198 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F NL ++D+ +L +F + G ++ +VV + G+S+G+GFV S+ E A A+E+
Sbjct: 81 FVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFN 140
Query: 116 AATVEGMELY------------APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYV 163
T +G L AP RA R +V + + +YV
Sbjct: 141 GYTFQGRPLRVNCGPPPPRDESAP--RAPRGGGGGGGGGSFVDSAN----------KVYV 188
Query: 164 KNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGI 222
N+ VD L+ FS+ G + K++ G S+GFGFV + E N AI+ L+GI
Sbjct: 189 GNLAWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAISNLDGI 248
Query: 223 LFHQKPLYVAIAQTKRER 240
+ + V +A++K R
Sbjct: 249 DLDGRQIRVTVAESKPRR 266
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAI 216
D L+V N+ VD +L F Q G + V+++ G S+GFGFV S+ +EA A+
Sbjct: 77 DLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAV 136
Query: 217 NTLNGILFHQKPLYV 231
NG F +PL V
Sbjct: 137 EQFNGYTFQGRPLRV 151
>gi|296485880|tpg|DAA27995.1| TPA: ELAV-like protein 3-like [Bos taurus]
Length = 407
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 98 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 150
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+L +++ + S++ I D NLYV + + + E++Q FSQ
Sbjct: 151 KLQTKTIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQY 195
Query: 183 G-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
G II+S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 196 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 242
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 52/234 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESA------LN 109
+ L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ + A LN
Sbjct: 175 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 234
Query: 110 AIEKLYAATVEGMELYA-PSLRAGR---IQESASFNNLYVKNLDDDVTEEILDKNL---- 161
+ L AA ++ PS + G+ Q S Y L LD L
Sbjct: 235 GQKPLGAAEPITVKFANNPSQKTGQALLTQLYQSSARRYAGPLHHQTQRFRLDNLLNMAY 294
Query: 162 --------------------------------YVKNINDDVDEIELKQYFSQCGIISSVK 189
+V N++ + DE L Q F G +++VK
Sbjct: 295 GVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVK 354
Query: 190 IMR---TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
++R TN+ KGFGFV +N DEA AI +LNG ++ L V+ +K+ +
Sbjct: 355 VIRDFTTNK--CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 406
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 87 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 146
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 147 LNGLKLQTKTIKVSYAR 163
>gi|359067089|ref|XP_002688919.2| PREDICTED: ELAV-like protein 3 [Bos taurus]
Length = 408
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 99 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 151
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+L +++ + S++ I D NLYV + + + E++Q FSQ
Sbjct: 152 KLQTKTIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQY 196
Query: 183 G-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
G II+S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 197 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 243
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 52/234 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESA------LN 109
+ L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ + A LN
Sbjct: 176 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 235
Query: 110 AIEKLYAATVEGMELYA-PSLRAGR---IQESASFNNLYVKNLDDDVTEEILDKNL---- 161
+ L AA ++ PS + G+ Q S Y L LD L
Sbjct: 236 GQKPLGAAEPITVKFANNPSQKTGQALLTQLYQSSARRYAGPLHHQTQRFRLDNLLNMAY 295
Query: 162 --------------------------------YVKNINDDVDEIELKQYFSQCGIISSVK 189
+V N++ + DE L Q F G +++VK
Sbjct: 296 GVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVK 355
Query: 190 IMR---TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
++R TN+ KGFGFV +N DEA AI +LNG ++ L V+ +K+ +
Sbjct: 356 VIRDFTTNK--CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 407
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 88 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 147
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 148 LNGLKLQTKTIKVSYAR 164
>gi|7446337|pir||T15542 hypothetical protein C18A3.5 - Caenorhabditis elegans
Length = 448
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESAL 108
T F F +L+S +DN KL + F FGD+ +KV+ + KSKGYGFV Y +E A
Sbjct: 171 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 230
Query: 109 NAIEKLYAATV--EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKN 165
AIE++ + + + + G ++ + +N K+ D+ + D ++YV N
Sbjct: 231 RAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNE---KSYDEIYNQTSGDNTSVYVGN 287
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
I + E E++Q F+ G I+ V+I + +G+ FV F N D A +AI +N
Sbjct: 288 I-ASLTEDEIRQGFASFGRITEVRIFKM-----QGYAFVKFDNKDAAAKAIVQMN 336
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 45/237 (18%)
Query: 19 PFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKF- 77
P +LYVG+LDST + IA++ T T + F V+ + W ++ K
Sbjct: 45 PRTLYVGNLDST----VTEDFIATLFNQIGSVTKTKVIFDVSFSL----WNKTNLYRKLL 96
Query: 78 --------GDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL-- 124
G + + + D G + Y FV++S A A++ + + E+
Sbjct: 97 LARGIGVPGYKCTRRQPIHTDTETGSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKV 156
Query: 125 ---YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQ 181
P + +I + F+ ++V +++ +VD +L++ F
Sbjct: 157 NWAVEPGQQQSKIDTTRHFH-------------------VFVGDLSSEVDNQKLREAFQP 197
Query: 182 CGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237
G +S K++R TN SKG+GFV + +EA RAI +NG ++ + A K
Sbjct: 198 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 254
>gi|238505292|ref|XP_002383875.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|317151540|ref|XP_001824733.2| nucleolin protein Nsr1 [Aspergillus oryzae RIB40]
gi|220689989|gb|EED46339.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|391872083|gb|EIT81226.1| nuclear localization sequence binding protein [Aspergillus oryzae
3.042]
Length = 525
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 12/183 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL+ +D L F +FG++ +++ +D G+S+G+G+V+Y+ A A E
Sbjct: 283 FVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFEAKR 342
Query: 116 AATVEGMEL---YAPSLRAGRIQESASFNN---LYVKNLDDDVTEEILDKNLYVKNINDD 169
++G ++ YA A R E F + ++ D + E L+V NI
Sbjct: 343 DTEIDGRKINLDYATGRPANR--EQGGFQDRAQARARSFGDQASPE--SDTLFVGNIPFS 398
Query: 170 VDEIELKQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
+E L + F Q G I +++ G KGFG+V FS+ +EA A N LNG +P
Sbjct: 399 ANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEAREAFNELNGAEIDGRP 458
Query: 229 LYV 231
+ +
Sbjct: 459 VRL 461
Score = 44.7 bits (104), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAI 216
NL+V N++ +VDE L+ F + G +S V+IM + G S+GFG+V ++N +A +A
Sbjct: 281 NLFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAF 338
>gi|444525484|gb|ELV14031.1| ELAV-like protein 3 [Tupaia chinensis]
Length = 332
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 26/166 (15%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+ +F GDI+S K+V + G+S GYGFV YS A AI +T+ G++L
Sbjct: 46 EFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI-----STLNGLKLQTK 100
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-IIS 186
+++ + S++ I D NLYV + + + E++Q FSQ G II+
Sbjct: 101 TIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 145
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 146 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 187
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AI+T
Sbjct: 32 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIST 91
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 92 LNGLKLQTKTIKVSYAR 108
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 271 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 328
Query: 218 TLNG 221
+L+G
Sbjct: 329 SLHG 332
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 24/191 (12%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLYAAT 118
NL ID+ +L Q+F + G ++ S+V+ +++ +S+G+GFV ST E A A+E +
Sbjct: 149 NLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEMFHRYD 208
Query: 119 VEGMELY----APSLRAGRIQESA-SFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
V+G L AP R R++ F + +YV N+ VD+
Sbjct: 209 VDGRLLTVNKAAP--RGARVERPPRQFGPSF---------------RIYVGNLPWQVDDS 251
Query: 174 ELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L Q FS+ G + +++ G S+GFGFV + +E + AI L+G + L V
Sbjct: 252 RLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVN 311
Query: 233 IAQTKRERTSY 243
+A+ + R +
Sbjct: 312 VAEERPPRRGF 322
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNA 110
P+F + NL +D+ +L Q+FS+ G + ++VV ++ G+S+G+GFV +TQE +A
Sbjct: 235 PSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDA 294
Query: 111 IEKLYAATVEGMEL 124
I L +++G L
Sbjct: 295 IAALDGQSLDGRAL 308
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIM---RTNRGISKGFGFVCFSNPDEANR 214
+ +YV N+ D+D L Q F Q GI+ +++ T+R S+GFGFV S +EA +
Sbjct: 142 EAKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDR--SRGFGFVTMSTVEEAEK 199
Query: 215 AINTLNGILFHQ 226
A+ +FH+
Sbjct: 200 AVE-----MFHR 206
>gi|452845447|gb|EME47380.1| hypothetical protein DOTSEDRAFT_69347 [Dothistroma septosporum
NZE10]
Length = 607
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 12/184 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + + +L + F + G + +++V + G+SKG G+V++ +ES AI L
Sbjct: 224 FVQQLAARLRSRELKEFFEQAGPVVDAQIVKDRVSGRSKGVGYVEFKEEESVQKAI-ALT 282
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEE--ILDKNLYVKNINDDVDEI 173
+ G+ + A Q + + N +N + T+ I LYV NI+ + E
Sbjct: 283 GQKLLGIPIIA--------QLTEAEKNRQARNTEGTATQSNGIPFHRLYVGNIHFSITED 334
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK F G + V++ + G SKG+GFV F +P +A A+ +NG +P+ V +
Sbjct: 335 DLKNVFEPFGELEFVQLQKEEAGRSKGYGFVQFIDPTQAKEALEKMNGFELAGRPIRVGL 394
Query: 234 AQTK 237
K
Sbjct: 395 GNDK 398
>gi|261191422|ref|XP_002622119.1| RNA splicing factor [Ajellomyces dermatitidis SLH14081]
gi|239589885|gb|EEQ72528.1| RNA splicing factor [Ajellomyces dermatitidis SLH14081]
gi|239612708|gb|EEQ89695.1| RNA splicing factor [Ajellomyces dermatitidis ER-3]
gi|327351781|gb|EGE80638.1| RNA splicing factor [Ajellomyces dermatitidis ATCC 18188]
Length = 583
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 14/208 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +L F K G ++ +++V + G+SKG G+V++ +ES AI+ L
Sbjct: 191 FVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDEESVPLAIQ-LT 249
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNINDDVDE 172
+ G+ + A Q + + N +N + + + I LYV NI+ + E
Sbjct: 250 GQKLLGIPIIA--------QLTEAEKNRQARNPEANASGNQNSIPFHRLYVGNIHFSITE 301
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G + V++ + G S+G+GFV F +P++A A+ +NG +P+ V
Sbjct: 302 SDLQKVFEPFGELDFVQLQKEEGGRSRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVG 361
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNF 260
+ K S ++ QG G A NF
Sbjct: 362 LGNDKFTPESTANLLQRFQGQG-AHHNF 388
>gi|109123517|ref|XP_001107360.1| PREDICTED: ELAV-like protein 3-like [Macaca mulatta]
gi|296232958|ref|XP_002761808.1| PREDICTED: ELAV-like protein 3 [Callithrix jacchus]
Length = 251
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 51 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 103
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+L +++ + S++ I D NLYV + + + E++Q FSQ
Sbjct: 104 KLQTKTIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQY 148
Query: 183 G-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
G II+S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 195
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 30/194 (15%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NLA +D+ L +F + G ++ ++V+ +++ +S+G+GFV ST E A A+EK
Sbjct: 130 FVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFN 189
Query: 116 AATVEGMELY----APS----LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
+ G L AP RA R+ E A +YV N+
Sbjct: 190 RYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF--------------------RVYVGNLP 229
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
DVD L+Q FS+ G + +++ G S+GFGFV SN +E N AI L+G
Sbjct: 230 WDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNENELNDAIAALDGQNMEG 289
Query: 227 KPLYVAIAQTKRER 240
+ + V +A+ + R
Sbjct: 290 RAIRVNVAEERPRR 303
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNA 110
P F + NL +DN +L Q+FS+ G + ++VV ++ G+S+G+GFV S + +A
Sbjct: 219 PAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNENELNDA 278
Query: 111 IEKLYAATVEG 121
I L +EG
Sbjct: 279 IAALDGQNMEG 289
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI--SKGFGFVCFSNPDEANRA 215
+ L+V N+ DVD L F Q G + +++ NR S+GFGFV S +EA A
Sbjct: 126 EAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVI-YNRETDQSRGFGFVTMSTVEEAETA 184
Query: 216 INTLN 220
+ N
Sbjct: 185 VEKFN 189
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 9/187 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ NL+ +++ +L +F FG++ ++KV G SKGYGFVQYS+ A A+ L
Sbjct: 394 YVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLN 453
Query: 116 AATVEGMELYA-----PS-LRAGRIQESASFNNLYVKNLDDDVT-EEILDKNLYVKNIND 168
V+G ++ PS L ++ ++ N V++ T +EI NLYV N+
Sbjct: 454 GRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPS 513
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGIS-KGFGFVCFSNPDEANRAINTLNGILFHQK 227
+D +L + F G I+ +++ S KG+GF+ F++ + A +AI +NG L +
Sbjct: 514 SIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGE 573
Query: 228 PLYVAIA 234
+ V +A
Sbjct: 574 MIIVRVA 580
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 13/180 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL +++ + KL ++F FG I S+VV G S+GYGFV+YS A AI+++
Sbjct: 299 YVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMN 358
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
VEG L +R S +N + + D+ + LYV N++ ++ L
Sbjct: 359 GRLVEGRAL---EVRVAGFPSSE--DNSQQPSKETDMAK------LYVCNLSLSMNTDRL 407
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
F G +++ K+ + + G+SKG+GFV +S+P A A+ LNG L + + V ++
Sbjct: 408 IHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVS 467
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 14/196 (7%)
Query: 73 IFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR-A 131
+F FG +VV ++ + + YG V++ A AI+ L + G L ++R A
Sbjct: 708 LFRPFG-----RVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSIL---AVRVA 759
Query: 132 GRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIM 191
G ES + + + +I NLYV ++ V+ L F CG I+ K++
Sbjct: 760 GLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVV 819
Query: 192 -RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE-RTSYLRIMYA 249
G+SKGFGFV F++ A A+ +NG L V IA + +SY+ Y+
Sbjct: 820 VERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFYS 879
Query: 250 K---QGPGLASTNFPV 262
P A+ P
Sbjct: 880 HFTMHDPAKAAVGIPT 895
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 154 EEILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEA 212
+E+ + NLYV N+ V +L + F G I+ S + G+S+G+GFV +S+P A
Sbjct: 291 KEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCA 350
Query: 213 NRAINTLNGILFHQKPLYVAIA 234
+ AI +NG L + L V +A
Sbjct: 351 SEAIKRMNGRLVEGRALEVRVA 372
>gi|123430889|ref|XP_001307992.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889649|gb|EAX95062.1| hypothetical protein TVAG_428650 [Trichomonas vaginalis G3]
Length = 537
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 65 IDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124
I+ +LH++F +G++ S K+ DG +KGY +VQ+ A A +L A + G ++
Sbjct: 105 IEVSQLHELFQTYGEVISCKLPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKI 164
Query: 125 -YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV-DEIELKQYFSQC 182
P + R Q+++ +N DDV N++++N+ +V +E +L FS+
Sbjct: 165 SVEPYKKKERPQKTSPASNPRGAPASDDVF-----TNIFIRNLPSNVRNETDLGNLFSEF 219
Query: 183 GIISSVKIMRTNRGISKGF-GFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
G++ S K++ GF GF + D A RAI LNG + K L V A +K ER
Sbjct: 220 GVVISTKML------PDGFSGFCNMIDHDSAVRAIQALNGKVIDGKVLEVVRAISKEERM 273
Query: 242 SYLRIMYAK 250
R + K
Sbjct: 274 GVPRPVPGK 282
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 21/181 (11%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119
NL S I + + + G++ + + Q+G + FV + T ESAL AI++ +
Sbjct: 15 NLPSGITTDFIKILLQECGEVVNVTLKERQNGN---FAFVTFDTPESALKAIKEFNYTKL 71
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G +P + QE + NL + NLYV+ ++ ++ +L + F
Sbjct: 72 NG----SPIVITPTTQE---YQNLIKSG----------EGNLYVRGLDVYIEVSQLHELF 114
Query: 180 SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239
G + S K+ G++KG+ +V F +P++A +A LN + + K + V + K+E
Sbjct: 115 QTYGEVISCKLPTGTDGLNKGYAYVQFRDPNDAEKARVELNDAVINGKKISVEPYK-KKE 173
Query: 240 R 240
R
Sbjct: 174 R 174
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor
gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 95/195 (48%), Gaps = 7/195 (3%)
Query: 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALN 109
+P F NL + D+ L ++F + G+++ +V+ + G+S+G+GFV S++E
Sbjct: 84 SPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEA 143
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
A ++ G EL +LR N + +YV N+
Sbjct: 144 ACQQF-----NGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWG 198
Query: 170 VDEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
VD+ L+ FS+ G + K++ + G S+GFGFV +S+ +E N AI +L+G+ + +
Sbjct: 199 VDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRA 258
Query: 229 LYVAIAQTKRERTSY 243
+ V+ A+ + R +
Sbjct: 259 IRVSPAEARPPRRQF 273
>gi|449446975|ref|XP_004141245.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
gi|449498692|ref|XP_004160607.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
Length = 426
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 127/264 (48%), Gaps = 32/264 (12%)
Query: 33 LRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFS-KFGDIQSSKVVVSQD- 90
RL A ++ D S P F +LA+ + + L++ FS KF ++++KVV+ +
Sbjct: 157 FRLNWATFSTGDKRSD-NDPDLSIFVGDLAADVTDSLLYETFSSKFPSVKAAKVVIDANT 215
Query: 91 GKSKGYGFVQY---STQESALNAIEKLYAATVEGMELYA--PSLRAGRIQESASFNNLYV 145
G+SKGYGFV++ + + A+ + +Y ++ M + A P +G Q+ +S Y
Sbjct: 216 GRSKGYGFVRFGDDNERSQAMTEMNGIYCSSRP-MRIGAATPRKSSGYQQQHSSQGGGYS 274
Query: 146 KN--LDDDVTEEILDKN--LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGF 201
N + E N ++V ++ +V + +L+Q FSQ G I SVKI + KG
Sbjct: 275 TNGYFSQGLQSEGDSANTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIP-----VGKGC 329
Query: 202 GFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER-----------TSYLRIMYAK 250
GFV F+N ++A A+ LNG + ++ + ++ + + Y +Y
Sbjct: 330 GFVQFANRNDAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRDFGNQWNGAYYGGHIYDG 389
Query: 251 QGPGLASTNFPVHPTLYQRALQVY 274
G GLAS P P++Y A Y
Sbjct: 390 YGYGLAS---PHDPSMYHAAYGAY 410
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 22/209 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L +D LH FS G+I S KV+ + Q G S+GYGFV++ + +A ++
Sbjct: 87 WVGDLHHWMDESYLHSCFSSVGEISSMKVIRNKQTGLSEGYGFVEFLSHTTAEKVLQNYS 146
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++ PS A+F+ D ++ D +++V ++ DV + L
Sbjct: 147 G-------MFMPSTEQTFRLNWATFST------GDKRSDNDPDLSIFVGDLAADVTDSLL 193
Query: 176 KQYFSQCGIISSVK----IMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231
+ FS SVK ++ N G SKG+GFV F + +E ++A+ +NGI +P+ +
Sbjct: 194 YETFSS--KFPSVKAAKVVIDANTGRSKGYGFVRFGDDNERSQAMTEMNGIYCSSRPMRI 251
Query: 232 AIAQTKRERTSYLRIMYAKQGPGLASTNF 260
A T R+ + Y + ++ QG G ++ +
Sbjct: 252 GAA-TPRKSSGYQQ-QHSSQGGGYSTNGY 278
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAI 216
+K ++V +++ +DE L FS G ISS+K++R + G+S+G+GFV F + A + +
Sbjct: 83 NKTIWVGDLHHWMDESYLHSCFSSVGEISSMKVIRNKQTGLSEGYGFVEFLSHTTAEKVL 142
Query: 217 NTLNGILF 224
+G+
Sbjct: 143 QNYSGMFM 150
>gi|402084391|gb|EJT79409.1| RNA splicing factor Pad-1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 601
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 5/192 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
F LA+ + +LH+ F + G + ++++V + +SKG G+V++ ++ES L A +L
Sbjct: 213 FVQQLAARLRTKELHEFFEQAGPVAAAQIVKDRVSNRSKGVGYVEFKSEES-LPAALQLT 271
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ G+ + A + ++ + N N + +L LYV NI+ + E +L
Sbjct: 272 GQKLAGIPVIVQPTEAEKNRQVRTTEN---SNANGAQQNSVLFHRLYVGNIHFSITEPDL 328
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ F G + V++ + + G S+G+GFV +++P A A+ +NG +P+ V +
Sbjct: 329 RTVFGPFGELRFVQLQKEDNGRSRGYGFVEYNDPANAREALEKMNGFDLAGRPIRVGLGN 388
Query: 236 TKRERTSYLRIM 247
K S IM
Sbjct: 389 DKFTPESTANIM 400
>gi|338727192|ref|XP_001916382.2| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Equus
caballus]
Length = 345
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 99/221 (44%), Gaps = 44/221 (19%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+ +F GDI+S K+V + G+S GYGFV YS A AI T+ G++L
Sbjct: 57 EFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGLKLQTK 111
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-IIS 186
+++ + S++ I D NLYV + + + E++Q FSQ G II+
Sbjct: 112 TIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 156
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRI 246
S ++ G+S+G GF+ F EA AI LNG QKPL A T +
Sbjct: 157 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAAEPIT---------V 203
Query: 247 MYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPN 287
+A N P T +YQ+ R+GG + N
Sbjct: 204 KFA---------NNPSQKTGQALLTHLYQSSARRYGGPVHN 235
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 43 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 102
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 103 LNGLKLQTKTIKVSYAR 119
>gi|167523433|ref|XP_001746053.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775324|gb|EDQ88948.1| predicted protein [Monosiga brevicollis MX1]
Length = 635
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 74/176 (42%), Gaps = 23/176 (13%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L +F +G ++S K++ + GKS GYGFV+Y + A A + L +E L
Sbjct: 204 LRALFGAYGALKSCKLMYDRATGKSLGYGFVEYEDENGATKAADALNEFQIENKRLKVSF 263
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
R + I + NLY+K + ++E L FS CG I SV
Sbjct: 264 ARPS--------------------SSTITNANLYIKGLPTTINEQSLTDMFSSCGDIISV 303
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH--QKPLYVAIAQTKRERTS 242
+++ G KG GFV F EA AI N + PL V A + R +
Sbjct: 304 RVLYDRNGTPKGVGFVRFDQHKEAENAIQRFNNVTPEGCTTPLVVKFADNAKSRAA 359
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ L +TI+ L +FS GDI S +V+ ++G KG GFV++ + A NAI++
Sbjct: 277 YIKGLPTTINEQSLTDMFSSCGDIISVRVLYDRNGTPKGVGFVRFDQHKEAENAIQRFNN 336
Query: 117 ATVEG 121
T EG
Sbjct: 337 VTPEG 341
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV-VSQDGKSKGYGFVQYSTQESALNAIEKLY 115
F NL L + ++G+++S+ +V + G SKGY F+ +T A N I L
Sbjct: 444 FVYNLPPACTEQDLTALVGQYGNVRSASIVRYKETGSSKGYAFITVATNADATNVIRNLN 503
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
G +L + R A N++ ++
Sbjct: 504 NMRYNGRDLQVSFKKQSRRPAHADMGNMHAGHV 536
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 97/187 (51%), Gaps = 9/187 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
+ NL+ +++ +L +F FG++ ++KV G SKGYGFVQYS+ A A+ L
Sbjct: 391 YVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLN 450
Query: 116 AATVEGMELYA-----PS-LRAGRIQESASFNNLYVKNLDDDVT-EEILDKNLYVKNIND 168
V+G ++ PS L ++ ++ N V++ T +EI NLYV N+
Sbjct: 451 GRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSNLYVCNMPS 510
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGIS-KGFGFVCFSNPDEANRAINTLNGILFHQK 227
+D +L + F G I+ +++ S KG+GF+ F++ + A +AI +NG L +
Sbjct: 511 SIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAMNGALVGGE 570
Query: 228 PLYVAIA 234
+ V +A
Sbjct: 571 MIIVRVA 577
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 13/180 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ NL +++ + KL ++F FG I S+VV G S+GYGFV+YS A AI+++
Sbjct: 296 YVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRMN 355
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
VEG +L+ +S +N + + D+ + LYV N++ ++ L
Sbjct: 356 GRLVEGT-----ALKVRVTGFPSSEDNSQQPSKETDMAK------LYVCNLSLSMNTDRL 404
Query: 176 KQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
F G +++ K+ + + G+SKG+GFV +S+P A A+ LNG L + + V ++
Sbjct: 405 IHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVS 464
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 14/196 (7%)
Query: 73 IFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR-A 131
+F FG +VV ++ + + YG V++ A AI+ L + G L ++R A
Sbjct: 705 LFRPFG-----RVVQARMFRFQRYGMVRFDNPSCAAAAIDHLDGYQIGGSIL---AVRVA 756
Query: 132 GRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIM 191
G ES + + + +I NLYV ++ V+ L F CG I+ K++
Sbjct: 757 GLPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLPSYVNNERLIDLFLPCGQITQAKVV 816
Query: 192 -RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE-RTSYLRIMYA 249
G+SKGFGFV F++ A A+ +NG L V IA + +SY+ Y+
Sbjct: 817 VERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRIAGVHPDAMSSYMAHFYS 876
Query: 250 K---QGPGLASTNFPV 262
P A+ P
Sbjct: 877 HFTMHDPAKAAVGIPT 892
>gi|405975383|gb|EKC39949.1| tRNA selenocysteine 1-associated protein 1 [Crassostrea gigas]
Length = 337
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 23/192 (11%)
Query: 49 MATPTFIPFTVNLASTIDNWKLHQIFSK-FGDIQSSKVVVSQDGKSKGYGFVQYSTQESA 107
++TP + F +L +D++ L+Q FS+ F +S+KVV+ GKSKGYGFV+++ +
Sbjct: 61 LSTPEYSLFVGDLTEEVDDYTLYQAFSRRFKSCRSAKVVLEPSGKSKGYGFVRFTEETDQ 120
Query: 108 LNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
A+ ++ G + SL + E + F D+TEE+ D LY
Sbjct: 121 QRALIEMQHMQGVGKKPIRVSLATPKSPEYSLFVG--------DLTEEVDDYTLYQA--- 169
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL-FHQ 226
+ F C S K++ G SKG+GFV F+ + RA+ + + +
Sbjct: 170 -------FSRRFKSC---RSAKVVLEPSGKSKGYGFVRFTEETDQQRALIEMQHMQGVGK 219
Query: 227 KPLYVAIAQTKR 238
KP+ V++A KR
Sbjct: 220 KPIRVSLATPKR 231
>gi|355755476|gb|EHH59223.1| Hu-antigen C, partial [Macaca fascicularis]
Length = 237
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 50 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 102
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+L +++ + S++ I D NLYV + + + E++Q FSQ
Sbjct: 103 KLQTKTIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQY 147
Query: 183 G-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
G II+S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 148 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 194
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 39 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 98
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 99 LNGLKLQTKTIKVSYAR 115
>gi|345787182|ref|XP_542056.3| PREDICTED: ELAV-like protein 3 [Canis lupus familiaris]
Length = 647
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 338 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 390
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+L +++ + S++ I D NLYV + + + E++Q FSQ
Sbjct: 391 KLQTKTIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQY 435
Query: 183 G-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
G II+S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 436 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 482
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 102/237 (43%), Gaps = 58/237 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESA------LN 109
+ L T+ ++ Q+FS++G I +S+++V Q G S+G GF+++ + A LN
Sbjct: 415 YVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 474
Query: 110 AIEKLYAATVEGMELYA-PSLRAGRI------QESASFNNLYVKNLDDDVTEEILDKNL- 161
+ L AA ++ PS + G+ Q SA Y L LD L
Sbjct: 475 GQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSA---RRYAGPLHHQTQRFRLDNLLN 531
Query: 162 -----------------------------------YVKNINDDVDEIELKQYFSQCGIIS 186
+V N++ + DE L Q F G ++
Sbjct: 532 MAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVT 591
Query: 187 SVKIMR---TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
+VK++R TN+ KGFGFV +N DEA AI +LNG ++ L V+ +K+ +
Sbjct: 592 NVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHK 646
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 327 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 386
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 387 LNGLKLQTKTIKVSYAR 403
>gi|324512454|gb|ADY45159.1| ELAV-like protein 1 [Ascaris suum]
Length = 477
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 22/165 (13%)
Query: 61 LASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATV 119
L T+ ++ +FS G+I S K+V + G+S GYGFV Y QE AL A+ +T+
Sbjct: 110 LPQTMSQEEVRSLFSSMGEIDSCKLVRDKITGQSLGYGFVNYVRQEDALKAV-----STL 164
Query: 120 EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYF 179
G+ L +++ + S +E I NLYV + + + EL+ F
Sbjct: 165 NGLRLQNKTIKVSFARPS---------------SESIKGANLYVSGLPKSMSQPELENLF 209
Query: 180 SQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGIL 223
G I + +I+ N G+SKG GFV F EA AI+ LNG +
Sbjct: 210 RPYGQIITSRILSDNITGLSKGVGFVRFDRKGEAEVAISKLNGTI 254
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL + + + + E++ FS G I S K++R G S G+GFV + ++A +A++T
Sbjct: 104 NLIINYLPQTMSQEEVRSLFSSMGEIDSCKLVRDKITGQSLGYGFVNYVRQEDALKAVST 163
Query: 219 LNGILFHQKPLYVAIAQTKRE 239
LNG+ K + V+ A+ E
Sbjct: 164 LNGLRLQNKTIKVSFARPSSE 184
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-NRGISKGFGFVCFSNPDEANRAINTL 219
++V N+ + ++ L Q F G + SVKI+R G KG+GFV ++A AI L
Sbjct: 390 IFVYNLAPETEDSILWQLFGPFGAVLSVKIIRDFATGKCKGYGFVTMGQYEDAVTAITAL 449
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG + L V+ S LR
Sbjct: 450 NGTQLGNRTLQVSFKAQNVTSASLLR 475
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKL 114
F NLA ++ L Q+F FG + S K++ GK KGYGFV E A+ AI L
Sbjct: 391 FVYNLAPETEDSILWQLFGPFGAVLSVKIIRDFATGKCKGYGFVTMGQYEDAVTAITAL 449
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 24/189 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL +DN +L ++F G++ ++ ++ G S+G+GFV T E A +E
Sbjct: 116 FVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVELFN 175
Query: 116 AATVEGMELY----AP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
++EG L AP + R ++ S N +YV N+
Sbjct: 176 RHSLEGRLLTVNKAAPRGTKVERPSQAGSSTN-----------------KIYVGNLPWQA 218
Query: 171 DEIELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
D+ L Q FS+ G + +++ G S+GFGFV +S+ E N AI L+G +PL
Sbjct: 219 DDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPL 278
Query: 230 YVAIAQTKR 238
V IA+ +R
Sbjct: 279 RVNIAEDRR 287
>gi|17531965|ref|NP_495121.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
gi|373219010|emb|CCD65015.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
Length = 408
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESAL 108
T F F +L+S +DN KL + F FGD+ +KV+ + KSKGYGFV Y +E A
Sbjct: 131 TTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 190
Query: 109 NAIEKLYAATV--EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKN 165
AIE++ + + + + G ++ + +N K+ D+ + D ++YV N
Sbjct: 191 RAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNE---KSYDEIYNQTSGDNTSVYVGN 247
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220
I + E E++Q F+ G I+ V+I + +G+ FV F N D A +AI +N
Sbjct: 248 I-ASLTEDEIRQGFASFGRITEVRIFKM-----QGYAFVKFDNKDAAAKAIVQMN 296
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ST+ + +F++ G + +KV+ DG + Y FV++S A A++ +
Sbjct: 49 YVGNLDSTVTEDFIATLFNQIGSVTKTKVIF--DGSNDPYAFVEFSDHGQASQALQTMNK 106
Query: 117 ATVEGMEL-----YAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVD 171
+ E+ P + +I + F+ ++V +++ +VD
Sbjct: 107 RLLLDREMKVNWAVEPGQQQSKIDTTRHFH-------------------VFVGDLSSEVD 147
Query: 172 EIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
+L++ F G +S K++R TN SKG+GFV + +EA RAI +NG ++ +
Sbjct: 148 NQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIR 207
Query: 231 VAIAQTK 237
A K
Sbjct: 208 TNWATRK 214
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 18/189 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNAIEKLY 115
F NL +D+ KL QIF G ++ ++V+ +++ +S+G+GFV ST E A A+E +
Sbjct: 114 FVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELYH 173
Query: 116 AATVEG--MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
V G + + + R R + + Y + +YV N+ DVD+
Sbjct: 174 KFEVNGRFLTVNKAAPRGSRPERAP---REYEPSF-----------RVYVGNLPWDVDDA 219
Query: 174 ELKQYFSQCGIISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L+Q FS+ G + S +++ G S+GF FV ++ E N AI L+G + + V
Sbjct: 220 RLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGALDGQTLEGRAIRVN 279
Query: 233 IAQTKRERT 241
+A+ + R+
Sbjct: 280 VAEERPRRS 288
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD-GKSKGYGFVQYSTQESALNA 110
P+F + NL +D+ +L Q+FS+ G + S++VV ++ G+S+G+ FV +++ A
Sbjct: 203 PSFRVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEA 262
Query: 111 IEKLYAATVEG 121
I L T+EG
Sbjct: 263 IGALDGQTLEG 273
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIM---RTNRGISKGFGFVCFSNPDEANR 214
D L+V N+ DVD +L Q F G++ +++ T+R S+GFGFV S +EA +
Sbjct: 110 DAKLFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDR--SRGFGFVTMSTVEEAEK 167
Query: 215 AINTLNGILFHQ 226
A+ L+H+
Sbjct: 168 AVE-----LYHK 174
>gi|351694381|gb|EHA97299.1| ELAV-like protein 3, partial [Heterocephalus glaber]
Length = 344
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 26/166 (15%)
Query: 69 KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127
+ +F GDI+S K+V + G+S GYGFV YS A AI T+ G++L
Sbjct: 51 EFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGLKLQTK 105
Query: 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-IIS 186
+++ + S++ I D NLYV + + + E++Q FSQ G II+
Sbjct: 106 TIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 150
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 151 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 192
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 37 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 96
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 97 LNGLKLQTKTIKVSYAR 113
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 5/64 (7%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 283 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 340
Query: 218 TLNG 221
+LNG
Sbjct: 341 SLNG 344
>gi|346979496|gb|EGY22948.1| gar2 [Verticillium dahliae VdLs.17]
Length = 485
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 103/201 (51%), Gaps = 17/201 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG-KSKGYGFVQYSTQESALNAIEKLY 115
F +LA +++ L+Q FS+F ++ S++V+ ++G +S+G+G+V +S ESA A+E
Sbjct: 229 FVGSLAWAVNDDILYQAFSEFPNLTSARVITDREGGRSRGFGYVDFSDAESAKAALEAKN 288
Query: 116 AATVEG--MELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
+EG M + R R N + D ++ E L+V NI+ ++D+
Sbjct: 289 GTELEGRNMNIDFSGKRPERSDNPGDRANDRAQRHGDSLSPE--SDTLFVGNISFEMDQD 346
Query: 174 ELKQYFSQCGIISSVKI-MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+ +F+ +SV++ G KGFG+V FS+ D+A +A++ LNG Y+
Sbjct: 347 TVHAFFATVAEPTSVRLPTDPESGNLKGFGYVSFSSIDDAKKALSELNG-------QYLG 399
Query: 233 IAQTKRERTSYLRIMYAKQGP 253
+ R +R+ YA Q P
Sbjct: 400 EGSSGR----AVRLDYAGQRP 416
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 20/111 (18%)
Query: 146 KNLDDDV-------TEEILDKN--LYVKN----INDDVDEIELKQYFSQCGIISSVKIMR 192
K LDD V TE++ +++ L+V + +NDD+ L Q FS+ ++S +++
Sbjct: 204 KALDDPVIPPKKARTEDMSEQSATLFVGSLAWAVNDDI----LYQAFSEFPNLTSARVI- 258
Query: 193 TNR--GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
T+R G S+GFG+V FS+ + A A+ NG + + + + + ER+
Sbjct: 259 TDREGGRSRGFGYVDFSDAESAKAALEAKNGTELEGRNMNIDFSGKRPERS 309
>gi|426387253|ref|XP_004060088.1| PREDICTED: ELAV-like protein 3 isoform 2 [Gorilla gorilla gorilla]
Length = 366
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 28/171 (16%)
Query: 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
T D +K +F GDI+S K+V + G+S GYGFV YS A AI T+ G+
Sbjct: 43 TQDEFK--SLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIN-----TLNGL 95
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+L +++ + S++ I D NLYV + + + E++Q FSQ
Sbjct: 96 KLQTKTIKVSYARPSSA---------------SIRDANLYVSGLPKTMSQKEMEQLFSQY 140
Query: 183 G-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
G II+S ++ G+S+G GF+ F EA AI LNG QKPL A
Sbjct: 141 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG----QKPLGAA 187
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
NL V + ++ + E K F G I S K++R G S G+GFV +S+P++A++AINT
Sbjct: 32 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 91
Query: 219 LNGILFHQKPLYVAIAQ 235
LNG+ K + V+ A+
Sbjct: 92 LNGLKLQTKTIKVSYAR 108
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAIN 217
++V N++ + DE L Q F G +++VK++R TN+ KGFGFV +N DEA AI
Sbjct: 285 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIA 342
Query: 218 TLNGILFHQKPLYVAIAQTKRER 240
+LNG ++ L V+ +K+ +
Sbjct: 343 SLNGYRLGERVLQVSFKTSKQHK 365
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,390,571,727
Number of Sequences: 23463169
Number of extensions: 222986908
Number of successful extensions: 702570
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6124
Number of HSP's successfully gapped in prelim test: 12936
Number of HSP's that attempted gapping in prelim test: 639140
Number of HSP's gapped (non-prelim): 51169
length of query: 354
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 211
effective length of database: 9,003,962,200
effective search space: 1899836024200
effective search space used: 1899836024200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)