BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036905
(354 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 148 bits (374), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 109/347 (31%), Positives = 161/347 (46%), Gaps = 74/347 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA +DN K +IF FG + S + Q+GKS+G+GFV + ESALNA++++
Sbjct: 242 YVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMND 301
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
++G +LY GR Q+ + +K L + E L K NL+VKN++D +D
Sbjct: 302 KEIDGQKLYV-----GRAQKKRERLD-ELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDS 355
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ F G I+S ++M + G SKGFGFVCFS+P+EA +AI +N + KPLYVA
Sbjct: 356 EKLEEEFKPFGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVA 415
Query: 233 IAQTKRERTSYL----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF--- 279
+AQ K R S L R+ A G+ P + + Q PGF
Sbjct: 416 LAQRKDVRRSQLEQQIQARNQMRMQNAAAAAGM--------PGQFMSPMFYGQQPGFFPP 467
Query: 280 --RHGG----------MIPNGFSSPPPSPLFLTRAG------------------------ 303
R G M+P G PPP + RAG
Sbjct: 468 NGRGGAQGPFPPNPQMMMPRGGQMPPPQGQW-PRAGPNGQPVPVYGMPPVYGGEFNGPNG 526
Query: 304 --QAAANNLTNGNQRAAANN----SMLAVASPDERKDILGQGLYPLV 344
Q N NQ+ ++++ D++K ILG+ LYP +
Sbjct: 527 QRQQRGAYPPNRNQKGGRPQRDLAAIISTVPVDQQKRILGEELYPKI 573
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 97/192 (50%), Gaps = 12/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV + G+SK +GFV Y T E+A AIE +
Sbjct: 149 FIKNLHPAIDNKALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNG 208
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ E++ + R +ES + + + T N+YVKN+ +VD + +
Sbjct: 209 MLLNDREVFVGKHVSKRDRESK------FEEMKANFT------NVYVKNLAPEVDNAKFE 256
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G ++SV + G S+GFGFV F N + A A+ +N + LYV AQ
Sbjct: 257 EIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQK 316
Query: 237 KRERTSYLRIMY 248
KRER L+ +Y
Sbjct: 317 KRERLDELKRLY 328
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G Q S + V +D KS GY +V + AIE+
Sbjct: 61 YVGELNPSVNEALLFEIFSPIG--QVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEE 118
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + V+G R RI S +L D N+++KN++ +D
Sbjct: 119 LNYSLVDG--------RPCRIMWSQRDPSLRRNG----------DGNIFIKNLHPAIDNK 160
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ G SK FGFV + + A AI +NG+L + + ++V
Sbjct: 161 ALHDTFSAFGRILSCKVATDELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 220
Query: 234 AQTKRERTSYLRIMYA 249
+KR+R S M A
Sbjct: 221 HVSKRDRESKFEEMKA 236
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 26/121 (21%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDEANRAIN 217
LYV +N V+E L + FS G +SS+++ R ++K G+ +V F + +RAI
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRD--AVTKKSLGYAYVNFHKHADGSRAIE 117
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTN------FPVHPTLYQRAL 271
LN L +P RIM++++ P L +HP + +AL
Sbjct: 118 ELNYSLVDGRP---------------CRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKAL 162
Query: 272 Q 272
Sbjct: 163 H 163
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 145/261 (55%), Gaps = 25/261 (9%)
Query: 50 ATPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESAL 108
A P+F V NL I + +L + F K+GDI S+ V+ Q G S+ +GFV + + E+A
Sbjct: 234 AVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAA 293
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKN 165
A+EK+ G+ L L GR Q+ + + + + E++ NLY+KN
Sbjct: 294 VAVEKM-----NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKN 348
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++D V++ +LK+ FS+ G ++S K+M ++G+S+GFGFV +SNP+EA A+ +NG +
Sbjct: 349 LDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIG 408
Query: 226 QKPLYVAIAQTKRERTSYLRIMYAK-QGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM 284
+KPLYVA+AQ K ER ++L+ ++ + + PG S PV + GF H
Sbjct: 409 RKPLYVALAQRKEERQAHLQSLFTQIRSPGTMS---PVPSPMS----------GFHH--H 453
Query: 285 IPNGFSSPPPSPLFLTRAGQA 305
P G S P P+F+ GQ
Sbjct: 454 PPGGPMSGPHHPMFIGHNGQG 474
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 107/201 (53%), Gaps = 24/201 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L++ FS FG I S KV + G+SKGYGFVQ+ +E+A AI+KL
Sbjct: 149 FIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 208
Query: 117 ATVEGMELYAPSL--RAGRIQESA----SFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ R R + + SF N+YVKNL ++T++
Sbjct: 209 MLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDD--------------- 253
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
ELK+ F + G ISS +M+ G S+ FGFV F +P+ A A+ +NGI + LY
Sbjct: 254 ---ELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLY 310
Query: 231 VAIAQTKRERTSYLRIMYAKQ 251
V AQ K +R LR + ++
Sbjct: 311 VGRAQKKSDREEELRRKFEQE 331
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ +L +++ L +F++ + + +V +S GY +V ++ E A A+E L
Sbjct: 62 YVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNY 121
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIEL 175
A + R RI S + D + + K N+++KN++ +D L
Sbjct: 122 APIRD--------RPIRIMLS-----------NRDPSTRLSGKGNVFIKNLDASIDNKAL 162
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K ++V
Sbjct: 163 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFV 222
Query: 236 TKRERT 241
+++R
Sbjct: 223 RRQDRA 228
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 30/282 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A A+ ++
Sbjct: 194 YIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G +Y GR Q+ +K + + +E +++ NLYVKN++D +D+
Sbjct: 254 KEVNGRMVYV-----GRAQKRIERQG-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 DRLRKEFSPYGTITSTKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 233 IAQTKRERTSYLR--------IMYAKQGPGLASTNFPVH---PTLYQRALQVYQAPG--- 278
+AQ K ER + L M A GP L S P + PT+ Q + + + +P
Sbjct: 367 LAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPTMPQPSNRAFYSPNPVA 426
Query: 279 -FRHGGMIPNGFSSP----PPSPLFLTRAGQAAANNLTNGNQ 315
R + S P PP+PL + +N++ Q
Sbjct: 427 PVRPAPQWASHQSRPPQYQPPAPLMRAVPPRRMHSNISTMKQ 468
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 106/190 (55%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FGDI S KVV + G S+GYGFV + TQE+A AI+ +
Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
+ +++ ++ R +E + ++++ N+Y+KN +D+D+ L
Sbjct: 161 MLLNDRKVFVGHFKSRREREL-------------EYGAKVMEFTNVYIKNFGEDMDDKRL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
K+ FS G SVK+M N G S+GFGFV + N +EA +A+ +NG + + +YV AQ
Sbjct: 208 KEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER L+
Sbjct: 268 KRIERQGELK 277
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 32/188 (17%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 17 DLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEV 76
Query: 119 VEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
++G + P LR + N+++KNLDD + +K LY
Sbjct: 77 IKGRPIRIMWSQRDPGLR------KSGVGNVFIKNLDDSID----NKALY---------- 116
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
FS G I S K++ G S+G+GFV F + ANRAI T+NG+L + + ++V
Sbjct: 117 ----DTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVG 171
Query: 233 IAQTKRER 240
+++RER
Sbjct: 172 HFKSRRER 179
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LY+ +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 145/282 (51%), Gaps = 30/282 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A A+ ++
Sbjct: 194 YIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G +Y GR Q+ +K + + +E +++ NLYVKN++D +D+
Sbjct: 254 KEVNGRMIYV-----GRAQKRIERQG-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ FS G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 DRLRKEFSPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 233 IAQTKRERTSYLR--------IMYAKQGPGLASTNFPVH---PTLYQRALQVYQAPG--- 278
+AQ K ER + L M A GP L S P + P + Q + + +P
Sbjct: 367 LAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQPANYFLPAMPQPPNRTFYSPNPVA 426
Query: 279 -FRHGGMIPNGFSSP----PPSPLFLTRAGQAAANNLTNGNQ 315
R + S P PP+PL + ++N++ Q
Sbjct: 427 PVRQAPQWTSHQSRPPQYQPPAPLMRAVPPRRMSSNISTMKQ 468
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 107/190 (56%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+GYGFV + TQE+A AI+ +
Sbjct: 102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
+ +++ ++ R +E + ++++ N+Y+KN +D+D+ L
Sbjct: 161 MLLNDRKVFVGHFKSRREREL-------------EYGAKVMEFTNVYIKNFGEDMDDKRL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G SVK+M + G S+GFGFV + N +EA +A++ +NG + + +YV AQ
Sbjct: 208 REIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER L+
Sbjct: 268 KRIERQGELK 277
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 32/191 (16%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
++G + P LR + N+++KNLD E I +K LY
Sbjct: 74 FEVIKGRPIRIMWSQRDPGLR------KSGVGNVFIKNLD----ESIDNKALY------- 116
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
FS G I S K++ G S+G+GFV F + ANRAI T+NG+L + + +
Sbjct: 117 -------DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV 168
Query: 230 YVAIAQTKRER 240
+V +++RER
Sbjct: 169 FVGHFKSRRER 179
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 117/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L ++F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 ELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 116/196 (59%), Gaps = 5/196 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTE-EILDKNLYVKNINDDVDEIEL 175
+ G ++Y + +++ + + D +T +++ NLYVKN++D +D+ L
Sbjct: 254 KELNGKQIYVGRAQK-KVERQTELKRTFEQMKQDRITRYQVV--NLYVKNLDDGIDDERL 310
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 311 RKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 236 TKRERTSYLRIMYAKQ 251
K ER +YL Y ++
Sbjct: 370 RKEERQAYLTNEYMQR 385
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 13/194 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +I+N L+ S FG+I S VV ++G SKGYGFV + T E+A AI+K+
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNGRKVFVGQFKSRKEREA---------ELGARAKE---FPNVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLRIMYAK 250
K ER + L+ + +
Sbjct: 269 KVERQTELKRTFEQ 282
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL ID+ +L + FS FG I S+KV++ + G+SKG+GFV +S+ E A A+ ++
Sbjct: 297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMM-EGGRSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNL 148
V LY +L + + A N Y++ +
Sbjct: 356 RIVATKPLYV-ALAQRKEERQAYLTNEYMQRM 386
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 25/212 (11%)
Query: 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESAL 108
PT + +L + L++ FS G I S + + +D S Y +V + + A
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILS--IRICRDLITSGSSNYAYVNFQHTKDAE 66
Query: 109 NAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIND 168
+A++ + ++G + RI S +L + N++VKN++
Sbjct: 67 HALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFVKNLDK 108
Query: 169 DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228
++ L S G I S ++ G SKG+GFV F + A RAI +NG+L + +
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRK 167
Query: 229 LYVAIAQTKRERTSYLRIMYAKQGPGLASTNF 260
++V ++++ER + L AK+ P + NF
Sbjct: 168 VFVGQFKSRKEREAELGAR-AKEFPNVYIKNF 198
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +F KFG S KV+ + GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++Y RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KELNGKQIYV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFPV 262
K ER ++L Y ++ + + PV
Sbjct: 371 KEERQAHLTNQYMQRMASVRAVPNPV 396
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F + G SVK+M G SKGFGFV F ++A +A++ +NG + K +YV AQ
Sbjct: 209 DLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 20/176 (11%)
Query: 70 LHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128
L++ FS G I S +V +S GY +V + A A++ + ++G +
Sbjct: 27 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV---- 82
Query: 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV 188
RI S +L + N+++KN++ +D L FS G I S
Sbjct: 83 ----RIMWSQRDPSLRKSGVG----------NIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
K++ G SKG+GFV F + A RAI +NG+L + + ++V ++++ER + L
Sbjct: 129 KVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 183
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ D E L + FS G I S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------VRIMWSQRDPSL 93
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAM 573
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 119/219 (54%), Gaps = 13/219 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + + L + F++FG I S + ++ +GY FV + E A A E
Sbjct: 204 YMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAE---- 259
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL---DKNLYVKNINDDVDEI 173
TV G + + L GR Q+ A L + + E+ + N+YVKN+N V E
Sbjct: 260 -TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEE 318
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
EL+++FSQCG I+S K+M +G SKGFGFVCFS P+EA A+ T +G +FH KPLYVAI
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378
Query: 234 AQTKRERTSYLRIMY-----AKQGPGLASTNFPVHPTLY 267
AQ K +R L++ + A++ AS N + LY
Sbjct: 379 AQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLY 417
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 105/195 (53%), Gaps = 16/195 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++ N L +F KFG+I S KV +DGKS+GYGFVQ+ +++A AI+ L +
Sbjct: 115 FVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNS 174
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V E+Y G+ + D V E NLY+KN++ DV E L+
Sbjct: 175 TIVADKEIYV-----GKFMKKT-----------DRVKPEEKYTNLYMKNLDADVSEDLLR 218
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F++ G I S+ I + + +G+ FV F NP++A RA T+NG F K LYV AQ
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQK 278
Query: 237 KRERTSYLRIMYAKQ 251
K ER LR + ++
Sbjct: 279 KAEREQLLREQFKEK 293
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 109/198 (55%), Gaps = 22/198 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +ID+ LH FS FG+I S KV V G+SKGYGFVQY+ +ESA AIEKL
Sbjct: 127 FIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 186
Query: 117 ATVEGMELY-APSLRAGRIQESAS---FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ ++Y P LR +A+ F N+YVKNL + T++
Sbjct: 187 MLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDD----------------- 229
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK F + G I+S +M+ G SKGFGFV F N D+A RA+ +LNG F K YV
Sbjct: 230 -DLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVG 288
Query: 233 IAQTKRERTSYLRIMYAK 250
AQ K ER + LR+ Y +
Sbjct: 289 RAQKKSERETELRVRYEQ 306
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 160/364 (43%), Gaps = 82/364 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NLA + + L F ++G I S+ V+ +GKSKG+GFV + + A A+E L
Sbjct: 218 YVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Query: 117 ATVEGMELYAPSLRAGRIQESASFNN----LYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
+ E Y GR Q+ + Y +NL + ++ NLYVKN++ + +
Sbjct: 278 HKFDDKEWYV-----GRAQKKSERETELRVRYEQNLKE-AADKFQSSNLYVKNLDPSISD 331
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+LK+ FS G ++S K+MR G SKG GFV F+ P+EA A++ L+G + KPLYVA
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVA 391
Query: 233 IAQTKRERTSYLRI-------------------MYAKQGPGLASTNF---------PVHP 264
IAQ K +R L+ +Y GPG+ F P P
Sbjct: 392 IAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQP 451
Query: 265 TL-YQRALQVYQAPGFRHGGMIPNGFSSP------------------------------- 292
YQ+ L PG R GG F P
Sbjct: 452 GYGYQQQL----VPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQHSQQQNPMMQQQ 507
Query: 293 --PPSPLFLTRAGQAAANNLTN---GNQRA---AANNSMLAVASPDERKDILGQGLYPLV 344
P +F G+ + ++ GN A S L+ A+P++++ +LG+ LYPLV
Sbjct: 508 MHPRGRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLV 567
Query: 345 KKLK 348
++++
Sbjct: 568 EQVE 571
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 23/212 (10%)
Query: 36 CSALIASIDVHSAMATPTFIPFTVNLASTID-NWKLHQIFSKFGDIQSSKVV-VSQD--- 90
+A + S S AT T T +D N Q+F FG + + V V +D
Sbjct: 14 STAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVT 73
Query: 91 GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD 150
+S GYG+V ++ + A AI++L + LY +R +Y D
Sbjct: 74 RRSLGYGYVNFTNPQDAARAIQELNY-----IPLYGKPIRV-----------MYSHR--D 115
Query: 151 DVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPD 210
N+++KN+++ +D L FS G I S K+ + G SKG+GFV ++N +
Sbjct: 116 PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEE 175
Query: 211 EANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
A +AI LNG+L + K +YV ++ER S
Sbjct: 176 SAQKAIEKLNGMLLNDKQVYVGPFLRRQERDS 207
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 133/243 (54%), Gaps = 21/243 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ L ++FS+FG S KV+ +GKSKG+GFV Y E A A+E++
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+ G ++ GR Q+ +K + + +E + + NLY+KN++D +D+
Sbjct: 254 KEISGKIIFV-----GRAQKKVE-RQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L++ FS G I+S K+M + G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 EKLRKEFSPFGSITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVA 366
Query: 233 IAQTKRERTSYLRIMYAKQGPGLASTNFPVHPTL--YQRALQVYQAPGFRHGGMIPNGFS 290
+AQ K ER ++L Y ++ G+ + P + L +Q A Y P +P
Sbjct: 367 LAQRKEERKAHLTNQYMQRVAGMRA--LPANAILNQFQPAAGGYFVPA------VPQAQG 418
Query: 291 SPP 293
PP
Sbjct: 419 RPP 421
Score = 122 bits (305), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGY FV + TQE+A AIEK+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN ++VD+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGAKAKEFT---NVYIKNFGEEVDDESLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FSQ G SVK+MR G SKGFGFV + ++AN+A+ +NG K ++V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQAELK 277
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSL--GYAYVNFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + KP +RIM++++ P L
Sbjct: 70 DTMNFDVIKGKP---------------IRIMWSQRDPSL 93
Score = 35.0 bits (79), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVNF 351
SMLA A P E+K +LG+ L+PL++ + N
Sbjct: 557 SMLAAAPPQEQKQMLGERLFPLIQTMHSNL 586
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 121/217 (55%), Gaps = 19/217 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +IFS FG+ S KV++ G+S+G+GFV Y E A A+ ++
Sbjct: 194 YIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
V G +Y GR Q+ + +K + + +E +++ NLYVKN++D +D+
Sbjct: 254 KEVNGRMIYV-----GRAQKRIERQS-ELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L++ F G I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA
Sbjct: 308 DRLRKEFLPYGTITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366
Query: 233 IAQTKRERTSYLR--------IMYAKQGPGLASTNFP 261
+AQ K ER + L M A GP L S P
Sbjct: 367 LAQRKEERKAILTNQYMQRLATMRAMPGPLLGSFQQP 403
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 107/190 (56%), Gaps = 15/190 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV + G S+GYGFV + T E+A AI+ +
Sbjct: 102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
+ +++ ++ R +E + ++++ N+Y+KN +D+D+ L
Sbjct: 161 MLLNDRKVFVGHFKSRREREL-------------EYGAKVMEFTNVYIKNFGEDMDDKRL 207
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ FS G SVK+M + G S+GFGFV + N +EA +A++ +NG + + +YV AQ
Sbjct: 208 REIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ 267
Query: 236 TKRERTSYLR 245
+ ER S L+
Sbjct: 268 KRIERQSELK 277
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 32/188 (17%)
Query: 60 NLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
+L + L++ FS G I S +V +S Y ++ + A A++ +
Sbjct: 17 DLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTMNFEV 76
Query: 119 VEGMELYA------PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
++G + P LR + N+++KNLD E I +K LY
Sbjct: 77 IKGRPIRIMWSQRDPGLR------KSGVGNVFIKNLD----ESIDNKALY---------- 116
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
FS G I S K++ G S+G+GFV F + ANRAI T+NG+L + + ++V
Sbjct: 117 ----DTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVG 171
Query: 233 IAQTKRER 240
+++RER
Sbjct: 172 HFKSRRER 179
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LY+ +++ DV E L + FS G I S+++ R T R +S + ++ F P +A RA+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLS--YAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEVIKGRP---------------IRIMWSQRDPGL 93
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 109/200 (54%), Gaps = 3/200 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N D+ KL + F +G I S KV+ +DGKSKG+GFV + T E+A A++ L
Sbjct: 186 YVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNG 245
Query: 117 ATV-EGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
+ EG LY RA + E + L E + NLYVKN++D +D+ L
Sbjct: 246 KDMGEGKSLYVA--RAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I+S K+M G SKGFGFVCF+ EA A+ LNG + KPLYVA+AQ
Sbjct: 304 RIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQ 363
Query: 236 TKRERTSYLRIMYAKQGPGL 255
K ER ++L Y + G+
Sbjct: 364 RKEERKAHLASQYMRHMTGM 383
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN ++ FS FG+I S KV + G SKGYGFV + T+E+A +I+K+
Sbjct: 93 FIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNG 152
Query: 117 ATVEGMELYAPSL--RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ G ++Y R R +E L+ N+YVKN +D D+ +
Sbjct: 153 MLLNGKKVYVGKFIPRKEREKELGEKAKLFT--------------NVYVKNFTEDFDDEK 198
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAI 233
LK++F G I+S K+M G SKGFGFV F + A A+ LNG + K LYVA
Sbjct: 199 LKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVAR 258
Query: 234 AQTKRERTSYLR 245
AQ K ER L+
Sbjct: 259 AQKKAERQQELK 270
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D + FS G I S K+ +G SKG+GFV F + AN +I+ +
Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150
Query: 220 NGILFHQKPLYVAIAQTKRERTSYL 244
NG+L + K +YV ++ER L
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKEL 175
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ DV+E L FS G + S+++ R T R + G+ +V F P +A RA+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSL--GYAYVNFQQPADAERAL 60
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N L KP +RIM++++ P L
Sbjct: 61 DTMNFDLVRNKP---------------IRIMWSQRDPSL 84
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKLKVNF 351
S+LA A P E+K ILG+ LYP+++ + N
Sbjct: 558 SLLANAKPQEQKQILGERLYPMIEHMHANL 587
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 127/212 (59%), Gaps = 10/212 (4%)
Query: 51 TPTFIPFTV-NLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALN 109
TP F V NL I +L + F KFG I S+ V+ Q G S+ +GFV + E+A +
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAAS 284
Query: 110 AIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT---EEILDKNLYVKNI 166
A+EK+ G+ L L GR Q+ + + + + E+ NLY+KN+
Sbjct: 285 AVEKM-----NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339
Query: 167 NDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226
+D VD+ +LK+ FS+ G ++S K+M +G+S+GFGFV +SNP+EA RA++ +NG + +
Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGR 399
Query: 227 KPLYVAIAQTKRERTSYLRIMYAK-QGPGLAS 257
KPLY+A+AQ K +R ++L+ ++++ + PG S
Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIRAPGPMS 431
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 103/195 (52%), Gaps = 12/195 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ++IDN L + FS FG I S KV + G+SKGYGFVQ+ +ESA AI+KL
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ R QE A D+ T N+YVKN+ ++ E EL+
Sbjct: 199 MLMNDKQVFVGHFI--RRQERAR----------DENTPTPRFTNVYVKNLPKEIGEDELR 246
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G+ISS +MR G S+ FGFV F + A A+ +NGI LYV AQ
Sbjct: 247 KTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 237 KRERTSYLRIMYAKQ 251
K ER LR + ++
Sbjct: 307 KSEREEELRRKFEQE 321
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ +L + L +F ++ S +V Q+ +S GY ++ +S A A+E L
Sbjct: 52 YAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN- 110
Query: 117 ATVEGMELYAPSL-RAGRIQESASFNNLYVKNLDDDVTEEILDK-NLYVKNINDDVDEIE 174
Y P R RI S + D + + K N+++KN++ +D
Sbjct: 111 --------YTPLFDRPIRIMLS-----------NRDPSTRLSGKGNIFIKNLDASIDNKA 151
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L + FS G I S K+ G SKG+GFV F + A AI+ LNG+L + K ++V
Sbjct: 152 LFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHF 211
Query: 235 QTKRER 240
++ER
Sbjct: 212 IRRQER 217
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
+ +LY +++ V E L F + SV++ R S G+ ++ FSNP++A RA+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAME 107
Query: 218 TLNGILFHQKPLYVAIA 234
LN +P+ + ++
Sbjct: 108 ALNYTPLFDRPIRIMLS 124
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 110/198 (55%), Gaps = 9/198 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL +D L +FS+FG + S KV+ G S+ +GFV + E A A+ +
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDD---DVTEEILDKNLYVKNINDDVDEI 173
V G LYA GR Q+ N + + D NLYVKN++D +D+
Sbjct: 254 KEVSGRLLYA-----GRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDD 308
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ FS G+I+S K+M T G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+
Sbjct: 309 KLRKEFSPYGVITSAKVM-TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 234 AQTKRERTSYLRIMYAKQ 251
AQ K ER + L Y ++
Sbjct: 368 AQRKEERKAILTNQYMQR 385
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KV + G S+G+GFV + T E+A AI +
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ R +E+ L + L+ N+YVKN+ DVDE L+
Sbjct: 161 MLLNDRKVFVGHFKSRREREA----ELGARALEFT--------NIYVKNLPVDVDEQGLQ 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FSQ G + SVK+MR N G S+ FGFV F +EA +A+ +NG + LY AQ
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 237 KRERTSYLR 245
+ ER + L+
Sbjct: 269 RVERQNELK 277
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-QDGKSKGYGFVQYSTQESALNAIEKLY 115
+ +L + L++ FS G I S +V +S GY ++ + A A++ +
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S L + N+++KN+ D +D L
Sbjct: 74 FEMLKGQPI--------RIMWSQRDPGLRKSGVG----------NIFIKNLEDSIDNKAL 115
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G S+GFGFV F + A +AINT+NG+L + + ++V +
Sbjct: 116 YDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK 174
Query: 236 TKRERTSYL 244
++RER + L
Sbjct: 175 SRREREAEL 183
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV +++ DV E L + FS G I S+++ R T R + G+ ++ F P +A RA+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSL--GYAYINFQQPADAERAL 69
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL 255
+T+N + +P +RIM++++ PGL
Sbjct: 70 DTMNFEMLKGQP---------------IRIMWSQRDPGL 93
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 111/191 (58%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ S + + ++F+KFG I S+ + DGK KG+GFV Y E A+ A+E L
Sbjct: 222 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALND 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+ + G +LY GR Q+ ++ K + E++ NL+VKN++D VD+
Sbjct: 282 SELNGEKLYV-----GRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+MRT G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 337 KLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 397 AQRKDVRRSQL 407
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 112/221 (50%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
RLC + + D I F NL IDN L+ FS FGDI SSK+ ++GKS
Sbjct: 107 RLCRIMWSQRDPSLRKKGSGNI-FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKS 165
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSL----RAGRIQES-ASFNNLYVKN 147
KG+GFV + + +A AI+ L + G E+Y AP L R +++E+ A + NLYVKN
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKN 225
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
++ + T+E + ++ F++ G I S + + G KGFGFV +
Sbjct: 226 INSETTDE------------------QFQELFAKFGPIVSASLEKDADGKLKGFGFVNYE 267
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
++A +A+ LN + + LYV AQ K ER L+ Y
Sbjct: 268 KHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQY 308
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ +L ++ L+ IFS G + S + V +D +K GY +V ++ E+ AIE+
Sbjct: 41 YVGDLEPSVSEAHLYDIFSPIGSV--SSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S +L K N+++KN++ D+D
Sbjct: 99 LNYTPIKG--------RLCRIMWSQRDPSLRKKG----------SGNIFIKNLHPDIDNK 140
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S KI G SKGFGFV F A AI+ LNG+L + + +YVA
Sbjct: 141 ALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAP 200
Query: 234 AQTKRERTSYLR 245
+++ER S L
Sbjct: 201 HLSRKERDSQLE 212
Score = 38.9 bits (89), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 26/121 (21%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDEANRAI 216
+LYV ++ V E L FS G +SS+++ R I+K G+ +V F++ + +AI
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRD--AITKTSLGYAYVNFNDHEAGRKAI 96
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL---ASTNFPV---HPTLYQRA 270
LN Y I + RIM++++ P L S N + HP + +A
Sbjct: 97 EQLN---------YTPI------KGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKA 141
Query: 271 L 271
L
Sbjct: 142 L 142
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 161/356 (45%), Gaps = 70/356 (19%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F+KFG I S + +DGKSKG+GFV + A A+++L+
Sbjct: 230 YAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHD 289
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +G +L+ RA + E + ++ + NLY+KNI + D+ L+
Sbjct: 290 SDFKGQKLFV--ARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLR 347
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F+ G I+S KIMR G+S+GFGFVC+S P+EAN+A++ +NG + +PLYVA+AQ
Sbjct: 348 EEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQR 407
Query: 237 KRERTSYL--RIMYAKQ---------------GPGL---ASTNFPVHP------TLYQRA 270
K R L +IM Q GPG+ FP P Y A
Sbjct: 408 KDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPGMYYPQPGAFPGQPGGMVPRPRYAPA 467
Query: 271 --------LQVYQAPGFRHGGMIPNGF--SSPP-------------------------PS 295
+ Y PG GM+P G+ + PP P
Sbjct: 468 GMMPQGMPMAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPTGVNGAPR 527
Query: 296 PLFLTRAGQ-------AAANNLTNGNQRAAANNSMLAVASPDERKDILGQGLYPLV 344
P GQ A +Q A + LA ASP+E+K +LG+ +YP V
Sbjct: 528 PAGQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKV 583
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 106/198 (53%), Gaps = 25/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV ++ G S GYGFV Y T E+A AI+ +
Sbjct: 138 FIKNLDAGIDNKALHDTFAAFGNILSCKVATNETG-SLGYGFVHYETAEAAEAAIKHVNG 196
Query: 117 ATVEGMELYAP-----SLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +I+E+ A+F N+Y KN+D +VT++
Sbjct: 197 MLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDD--------------- 241
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E ++ F++ G I+S + R G SKGFGFV F + +EA +A++ L+ F + L+
Sbjct: 242 ---EFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLF 298
Query: 231 VAIAQTKRERTSYLRIMY 248
VA AQ K ER LR Y
Sbjct: 299 VARAQKKSEREEELRRSY 316
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IFS G + S + V +D +S GY +V + A+E+
Sbjct: 50 YVGELDPSVTEAMLFEIFSMIGTVAS--IRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + + R RI S D N+++KN++ +D
Sbjct: 108 LNYSLIRN--------RPCRIMWSQR----------DPALRRTGQGNIFIKNLDAGIDNK 149
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ TN S G+GFV + + A AI +NG+L + K +YV
Sbjct: 150 ALHDTFAAFGNILSCKVA-TNETGSLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGH 208
Query: 234 AQTKRERTSYL 244
++ER + +
Sbjct: 209 HIPRKERQAKI 219
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 38/126 (30%)
Query: 136 ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR--- 192
++A+ +LYV LD VTE +L E+ FS G ++S+++ R
Sbjct: 42 DAANNTSLYVGELDPSVTEAML---------------FEI---FSMIGTVASIRVCRDAV 83
Query: 193 TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQG 252
T R + G+ +V F N + RA+ LN L +P RIM++++
Sbjct: 84 TRRSL--GYAYVNFLNAADGERAMEQLNYSLIRNRP---------------CRIMWSQRD 126
Query: 253 PGLAST 258
P L T
Sbjct: 127 PALRRT 132
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 115/205 (56%), Gaps = 6/205 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +++ +L ++F K+G S KV+ +GKSKG+GFV + E A A++++
Sbjct: 194 YIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KDMNGKSMFV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFLPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFP 261
K ER ++L Y ++ +AS P
Sbjct: 371 KEERQAHLTNQYMQR---MASVRVP 392
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 107/189 (56%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AI+K+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN DD+++ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGDDMNDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F + G SVK+M + G SKGFGFV F ++A +A++ +NG + K ++V AQ
Sbjct: 209 EMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G R RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKG--------RPVRIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI+ +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 546 SMLAAAPPQEQKQMLGERLFPLIQAM 571
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 163/374 (43%), Gaps = 84/374 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + + FG S + + G SKG+GFV Y ESA A+++L
Sbjct: 230 YIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNE 289
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G +LYA + +E+ + K L+++ + NLYVKN++D+ D+ L+
Sbjct: 290 KEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGV--NLYVKNLDDEWDDDRLR 347
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G I+S K+MR + G+S+GFGFVC+S+PDEA +A++ +NG + KPLYVA+AQ
Sbjct: 348 AEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 407
Query: 237 KRERTSYL----------RIMYAK-----QG-------------------PGLASTNFPV 262
K R L R+ Y QG PG+ P+
Sbjct: 408 KDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYGYPPMPGYGQPMPGMPPVRGPM 467
Query: 263 --HPTLYQRALQVYQ--------------------------APGF--RHGGM-IP----- 286
+P Q +Q APG+ R GG IP
Sbjct: 468 MGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNA 527
Query: 287 ----NGFSSPPPSPLFL-----TRAGQAAA---NNLTNGNQRAAANNSMLAVASPDERKD 334
NG SP +P L R GQ A Q + LA A+P E+K
Sbjct: 528 NGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQ 587
Query: 335 ILGQGLYPLVKKLK 348
+LG+ LYPL+ + +
Sbjct: 588 MLGEALYPLIHETQ 601
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 101/195 (51%), Gaps = 24/195 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F+ FGDI S KV ++GKS+G+ FV YST E+A AI+ +
Sbjct: 137 FIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNG 196
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +++E A F N+Y+KN+D +VT+
Sbjct: 197 MLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTD---------------- 240
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + G SV + R +G+SKGFGFV + N + A +A++ LN + K LY
Sbjct: 241 --AEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLY 298
Query: 231 VAIAQTKRERTSYLR 245
AQTK ER + L+
Sbjct: 299 AGRAQTKSEREAELK 313
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V Y A+E
Sbjct: 49 YVGELDPSVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G RI S D + N+++KN++ +D
Sbjct: 107 LNYSLIKGQSC--------RIMWSQR----------DPALRKTGQGNIFIKNLDQSIDNK 148
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ G S+GF FV +S + A+ AI +NG+L + K +YV
Sbjct: 149 ALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGH 208
Query: 234 AQTKRERTSYLRIMYAK 250
K+ER S + + A+
Sbjct: 209 HVGKKERLSKVEELRAQ 225
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 163/374 (43%), Gaps = 84/374 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + + FG S + + G SKG+GFV Y ESA A+++L
Sbjct: 230 YIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNE 289
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
V G +LYA + +E+ + K L+++ + NLYVKN++D+ D+ L+
Sbjct: 290 KEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGV--NLYVKNLDDEWDDDRLR 347
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
F G I+S K+MR + G+S+GFGFVC+S+PDEA +A++ +NG + KPLYVA+AQ
Sbjct: 348 AEFEAFGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQR 407
Query: 237 KRERTSYL----------RIMYAK-----QG-------------------PGLASTNFPV 262
K R L R+ Y QG PG+ P+
Sbjct: 408 KDVRRQALESQIAQRAQQRMQYGAGFPGMQGYMGQPMYGYPPMPGYGQPMPGMPPVRGPM 467
Query: 263 --HPTLYQRALQVYQ--------------------------APGF--RHGGM-IP----- 286
+P Q +Q APG+ R GG IP
Sbjct: 468 MGYPGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPGAPGYPVRPGGARIPAAPNA 527
Query: 287 ----NGFSSPPPSPLFL-----TRAGQAAA---NNLTNGNQRAAANNSMLAVASPDERKD 334
NG SP +P L R GQ A Q + LA A+P E+K
Sbjct: 528 NGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQ 587
Query: 335 ILGQGLYPLVKKLK 348
+LG+ LYPL+ + +
Sbjct: 588 MLGEALYPLIHETQ 601
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 101/195 (51%), Gaps = 24/195 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN LH F+ FGDI S KV ++GKS+G+ FV YST E+A AI+ +
Sbjct: 137 FIKNLDQSIDNKALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNG 196
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R +++E A F N+Y+KN+D +VT+
Sbjct: 197 MLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTD---------------- 240
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + G SV + R +G+SKGFGFV + N + A +A++ LN + K LY
Sbjct: 241 --AEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLY 298
Query: 231 VAIAQTKRERTSYLR 245
AQTK ER + L+
Sbjct: 299 AGRAQTKSEREAELK 313
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S + V +D +S GY +V Y A+E
Sbjct: 49 YVGELDPSVTEAMLFEIFNMIGPVAS--IRVCRDAVTRRSLGYAYVNYLNAADGERALEH 106
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + ++G RI S D + N+++KN++ +D
Sbjct: 107 LNYSLIKGQSC--------RIMWSQR----------DPALRKTGQGNIFIKNLDQSIDNK 148
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ G S+GF FV +S + A+ AI +NG+L + K +YV
Sbjct: 149 ALHDTFAAFGDILSCKVGTDENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGH 208
Query: 234 AQTKRERTSYLRIMYAK 250
K+ER S + + A+
Sbjct: 209 HVGKKERLSKVEELRAQ 225
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 109/193 (56%), Gaps = 10/193 (5%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL + I + +F +FG+I S +V Q+ K +G+GFV Y+ E A A+++L
Sbjct: 264 YIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELND 323
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+G +LY GR Q+ K + + E ++K NL++KN+ D+VD+
Sbjct: 324 KEYKGKKLYV-----GRAQKKHEREEELRKRYEQ-MKLEKMNKYQGVNLFIKNLQDEVDD 377
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
LK FS G I+S KIM +G SKGFGFVC++ P+EAN+A+ +N + KPLYVA
Sbjct: 378 ERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVA 437
Query: 233 IAQTKRERTSYLR 245
+AQ K R S L
Sbjct: 438 LAQRKEVRRSQLE 450
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 102/200 (51%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV V + G +KGYGFV + + ESA AIE +
Sbjct: 171 FIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNG 230
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y + R ++S A+F N+Y+KNLD ++TE+
Sbjct: 231 MLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQ--------------- 275
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E F Q G I+S+ +++ +GFGFV ++N + A +A++ LN + K LY
Sbjct: 276 ---EFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLY 332
Query: 231 VAIAQTKRERTSYLRIMYAK 250
V AQ K ER LR Y +
Sbjct: 333 VGRAQKKHEREEELRKRYEQ 352
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 97/212 (45%), Gaps = 23/212 (10%)
Query: 41 ASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYG 97
+S+ S A + + L ++ L ++F+ G + S + V +D +S GY
Sbjct: 67 SSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVAS--IRVCRDAVTRRSLGYA 124
Query: 98 FVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEIL 157
+V + E A+++L ++G R RI S D ++
Sbjct: 125 YVNFHNMEDGEKALDELNYTLIKG--------RPCRIMWSQR----------DPSLRKMG 166
Query: 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217
N+++KN++ +D L FS G I S K+ G +KG+GFV F + + AN AI
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIE 226
Query: 218 TLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
+NG+L + K +YV ++RER S + + A
Sbjct: 227 HVNGMLLNDKKVYVGHHVSRRERQSKVEALKA 258
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 152/323 (47%), Gaps = 57/323 (17%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129
L ++F+ +G I S + +GKSKG+GFV Y E+A+ A+E+L + G ++Y
Sbjct: 249 LKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYV--- 305
Query: 130 RAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEIELKQYFSQCGIIS 186
GR Q+ K ++ E++ NL++KN++D +D +L++ F G I+
Sbjct: 306 --GRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTIT 363
Query: 187 SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR- 245
S ++M G SKGFGFVCFS+P+EA +AI +N +F KPLYVA+AQ K R S L
Sbjct: 364 SARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQ 423
Query: 246 --------------------------IMYAKQG----PGLASTNFP-VHPTLYQRALQVY 274
+ Y +QG G + FP +P + R Q +
Sbjct: 424 QIQARNQMRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPGPNPQMIMRRGQPF 483
Query: 275 QAPGF--RHGGMIPNGFSSP----PPSPL-------FLTRAGQAAANNLTNGNQRAAANN 321
P R G PNG P PP + G N G Q+
Sbjct: 484 GGPEQWPRPG---PNGQPVPVYGIPPQAYSDFNGQNIRQQRGYYPNRNQNKGRQQRDL-A 539
Query: 322 SMLAVASPDERKDILGQGLYPLV 344
+++A A PD++K ILG+ LYP +
Sbjct: 540 AIIASAPPDQQKRILGEELYPKI 562
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
R C + + D + + I F NL IDN LH FS FG I S KV G+S
Sbjct: 121 RPCRIMWSQRDPSARRSGDGNI-FIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQS 179
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQES------ASFNNLYVKN 147
K +GFV Y T E+A AIE + + E++ + + +ES A+F N+YVKN
Sbjct: 180 KCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKN 239
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
+D + +EE +LK+ F+ G I+S+ + + G SKGFGFV +
Sbjct: 240 IDLEYSEE------------------DLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYE 281
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+ A +A+ LN + + +YV AQ KRER L+ Y
Sbjct: 282 GHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQY 322
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV---VSQDGKSKGYGFVQYSTQESALNAIEK 113
+ L ++++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 55 YVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKMEDGEKAIEE 112
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L + +EG R RI S D D N+++KN++ +D
Sbjct: 113 LNYSPIEG--------RPCRIMWSQR----------DPSARRSGDGNIFIKNLHPAIDNK 154
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ + G SK FGFV + + A AI +NG+L + + ++V
Sbjct: 155 ALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 214
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S + A
Sbjct: 215 HISKKDRESKFEEIKA 230
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID+ KL + F FG I S++V+V + GKSKG+GFV +S+ E A AI ++
Sbjct: 339 FIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQ 398
Query: 117 ATVEGMELY 125
G LY
Sbjct: 399 RMFFGKPLY 407
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 113/205 (55%), Gaps = 6/205 (2%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L + F ++G S KV+ GKS+G+GFV + E A A++ +
Sbjct: 194 YIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNG 253
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ RA + E + + + D NLYVKN++D +D+ L+
Sbjct: 254 KDLNGKAIFV--GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ F+ G I+S K+M G SKGFGFVCFS+P+EA +A+ +NG + KPLYVA+AQ
Sbjct: 312 KEFTPFGSITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 237 KRERTSYLRIMYAKQGPGLASTNFP 261
K ER ++L Y ++ +AS P
Sbjct: 371 KEERQAHLTNQYMQR---MASVRVP 392
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L+ FS FG+I S KVV ++G SKGYGFV + TQE+A AI+K+
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ +++ ++ + +E+ L E N+Y+KN +D+D+ LK
Sbjct: 161 MLLNDRKVFVGRFKSRKEREA---------ELGARAKEFT---NVYIKNFGEDMDDERLK 208
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
++F Q G SVK+M + G S+GFGFV F ++A +A++ +NG + K ++V AQ
Sbjct: 209 EWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQK 268
Query: 237 KRERTSYLR 245
K ER + L+
Sbjct: 269 KVERQTELK 277
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 20/199 (10%)
Query: 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQE 105
SA + P + +L + L++ FS G I S +V +S GY +V +
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN 165
A A++ + ++G + RI S +L + N+++KN
Sbjct: 64 DAERALDTMNFDVIKGKPV--------RIMWSQRDPSLRKSGVG----------NIFIKN 105
Query: 166 INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225
++ +D L FS G I S K++ G SKG+GFV F + A RAI+ +NG+L +
Sbjct: 106 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLN 164
Query: 226 QKPLYVAIAQTKRERTSYL 244
+ ++V ++++ER + L
Sbjct: 165 DRKVFVGRFKSRKEREAEL 183
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 322 SMLAVASPDERKDILGQGLYPLVKKL 347
SMLA A P E+K +LG+ L+PL++ +
Sbjct: 546 SMLAAAPPQEQKQMLGERLFPLIQAM 571
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 49/233 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + + ++F+KFG++ SS + Q+GKS+G+GFV ++T E+A A+++L
Sbjct: 244 YVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNG 303
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN+ DDVD+
Sbjct: 304 KDFRGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDD 358
Query: 174 ELKQYFSQCGIISSVKIMRTN--------------------------------------- 194
+L+ FS+ G I+S K+MR +
Sbjct: 359 KLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGD 418
Query: 195 --RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G SKGFGFVCFSNPD+A +A+ +N + KPLYVA+AQ K R S L
Sbjct: 419 RKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLE 471
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A AI+
Sbjct: 151 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKH--- 207
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN---LYVKNINDDVDEI 173
V GM L E + ++ D E + N +YVKNIN++V +
Sbjct: 208 --VNGMLL----------NEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDE 255
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F++ G ++S + R G S+GFGFV F+ + A +A++ LNG F + LYV
Sbjct: 256 EFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGR 315
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 316 AQKKHEREEELRKSY 330
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS+ G + S + V +D +S GY +V Y+T A+E+
Sbjct: 63 YVGELDPSVTEAMLFELFSQIGSVAS--IRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 120
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 121 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGAGNIFIKNLDAAIDNK 162
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A++AI +NG+L ++K +YV
Sbjct: 163 ALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 222
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 223 HIPKKDRQSKFEEMKA 238
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 156/348 (44%), Gaps = 73/348 (20%)
Query: 57 FTVNLASTID----NWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIE 112
FT A ID + ++F +G I S + +GKSKG+GFV + ESA+ A++
Sbjct: 231 FTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVD 290
Query: 113 KLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDD 169
+L + G ++Y GR Q+ K ++ E++ NL++KN++D
Sbjct: 291 ELNDKEINGQKIYV-----GRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDT 345
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D +L++ F G I+S ++M G SKGFGFVCFS+P+EA +AI +N + + KPL
Sbjct: 346 IDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPL 405
Query: 230 YVAIAQTKRERTSYL----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF 279
YVA+AQ K R S L R+ A G+ P P Y Q PGF
Sbjct: 406 YVALAQRKDVRRSQLEQQIQARNQMRMQNAAATGGIPGQFIP--PMFYG------QQPGF 457
Query: 280 -----RHGG---------MIPNGFSSPP------------PSPLF-LTRAGQAAANNLTN 312
R G M+P G PP P P++ + NN N
Sbjct: 458 FPPNGRGNGPFPGPNPQMMMPRGQIPPPQGQWPRPGPNGQPVPVYGMPPVYGGDFNNGAN 517
Query: 313 G-------------NQRAAANNSMLAV---ASPDERKDILGQGLYPLV 344
G NQ+ + A+ A D++K ILG+ LYP +
Sbjct: 518 GGRQQRGYYPNRNQNQKGRQQKDLAAIIANAPADQQKRILGEELYPKI 565
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 99/198 (50%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG I S KV G SK +GFV Y T E+A AIE +
Sbjct: 142 FIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENVNG 201
Query: 117 ATVEGMELYAPSLRAGRIQES------ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ E+Y + + +ES A+F N+Y KN+D D +EE
Sbjct: 202 MLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEE--------------- 246
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E K+ F G I+S+ + + + G SKGFGFV F N + A +A++ LN + + +Y
Sbjct: 247 ---EFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIY 303
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ KRER L+ Y
Sbjct: 304 VGRAQKKRERLEELKKQY 321
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 103/237 (43%), Gaps = 33/237 (13%)
Query: 28 DSTDLLRLCSALIASID-------------VHSAMATPTFIPFTV-NLASTIDNWKLHQI 73
+S + L L SA +AS + SA + T V L +++ L +I
Sbjct: 11 ESLEKLNLDSAPVASTEETEQTASGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEI 70
Query: 74 FSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAG 132
FS G + S +V KS GY +V + E AIE L + +EG R
Sbjct: 71 FSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEG--------RPC 122
Query: 133 RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR 192
RI S +L D N+++KN++ +D L F+ G I S K+
Sbjct: 123 RIMWSQRDPSLRRNG----------DGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVAT 172
Query: 193 TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249
+ GISK FGFV + + A AI +NG+L + + +YV +K++R S M A
Sbjct: 173 DDMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKA 229
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 140/293 (47%), Gaps = 44/293 (15%)
Query: 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129
++FS FG I S + QDGKSKG+GFV + ESA+ A+E+L + G ++Y
Sbjct: 249 FEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVG-- 306
Query: 130 RAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIELKQYFSQCGII 185
RA + +E +K + V E L K NL+VKN++D +D +L++ F G I
Sbjct: 307 RAQKKRERLE----ELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTI 362
Query: 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL- 244
+S K+M G SKGFGFVCF+ P+EA +AI +N + + KPLYVA+AQ K R S L
Sbjct: 363 TSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLE 422
Query: 245 ---------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPP-- 293
R+ A G GL P P Y + G PNG + P
Sbjct: 423 QQIQARNQMRMQNAAAG-GLPGQFIP--PMFYG-----------QQGFFPPNGRGNAPYP 468
Query: 294 -PSPLFLTRA-GQAAANNLTNGNQRAAANNSMLAVAS--PDERKDILGQGLYP 342
P+P + R GQ R N + V P ++D GQ + P
Sbjct: 469 GPNPQMMMRGRGQPFPEQWP----RPGPNGQPVPVYGIPPQFQQDFNGQNMRP 517
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 34 RLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKS 93
R C + + D + + I F NL IDN LH FS FG I S KV + G+S
Sbjct: 121 RPCRIMWSQRDPSARRSGDGNI-FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQS 179
Query: 94 KGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQES------ASFNNLYVKN 147
K +GFV Y T E+A AIE + + E++ + + +ES A+F N+YVKN
Sbjct: 180 KCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKN 239
Query: 148 LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207
+D + +EE +K FS G I+S+ + + G SKGFGFV F
Sbjct: 240 IDLNYSEESFEK------------------LFSPFGKITSIYLEKDQDGKSKGFGFVNFE 281
Query: 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMY 248
+ + A +A+ LN + + +YV AQ KRER L+ Y
Sbjct: 282 DHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 322
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV---VSQDGKSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 55 YVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSK--KSLGYAYVNYHKYEDGEKAIEE 112
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L +EG R RI S D D N+++KN++ +D
Sbjct: 113 LNYNPIEG--------RPCRIMWSQR----------DPSARRSGDGNIFIKNLHPAIDNK 154
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I S K+ G SK FGFV + + A AI +NG+L + + ++V
Sbjct: 155 ALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGK 214
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 215 HISKKDRESKFEEMKA 230
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 43/69 (62%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL TID+ KL + F FG I S+KV+V + GKSKG+GFV ++T E A AI ++
Sbjct: 339 FVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNT 398
Query: 117 ATVEGMELY 125
+ G LY
Sbjct: 399 RMINGKPLY 407
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDEANRAIN 217
LYV +N V+E L + FS G +SS+++ R +SK G+ +V + ++ +AI
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRD--AVSKKSLGYAYVNYHKYEDGEKAIE 111
Query: 218 TLNGILFHQKPLYVAIAQ 235
LN +P + +Q
Sbjct: 112 ELNYNPIEGRPCRIMWSQ 129
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 133/290 (45%), Gaps = 60/290 (20%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N++ + + +F+K+GD+ SS + +GKS+G+GFV ++T E A A+E+L
Sbjct: 249 YVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNG 308
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI---LDKNLYVKNINDDVDEI 173
G +LY GR Q+ K+ + E+ NLY+KN+ DD+D+
Sbjct: 309 KEFRGQDLYV-----GRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDD 363
Query: 174 ELKQYFSQCGIISSVKIMR-----------------TNR--------------------- 195
+L+Q FS+ G I+S K+MR N+
Sbjct: 364 KLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTE 423
Query: 196 -------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR--I 246
G SKGFGFVCFSNPD+A +A+ +N + KPLYVA+AQ K R + L I
Sbjct: 424 KKGDRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVRKNQLEASI 483
Query: 247 MYAKQGPGLASTNFPVHPTLYQRALQ--VYQAPGFRHGGMIPNGFSSPPP 294
Q L L Q+ +Q VY APG + M P G P P
Sbjct: 484 QARNQ---LRMQQAAAQAGLPQQYMQTPVYYAPGQQPNFMPPGGRGMPFP 530
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 101/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH F+ FG+I S KV ++G SKGYGFV Y T E+A AI+ +
Sbjct: 156 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNN 215
Query: 117 ATVEGMELYA-----PSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ ++Y R + +E A+F N+YVKN+ + T+E
Sbjct: 216 MLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDE--------------- 260
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E + F++ G ++S + R + G S+GFGFV F+ + A +A+ LNG F + LY
Sbjct: 261 ---EFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLY 317
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 318 VGRAQKKHEREEELRKSY 335
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 19/194 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ L ++ L ++FS+ G + S +V +S GY +V Y++ A+E+L
Sbjct: 68 YVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALEELN 127
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G R RI S D + N+++KN++ +D L
Sbjct: 128 YTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDVAIDNKAL 169
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
F+ G I S K+ + G SKG+GFV + + A +AI +N +L ++K +YV
Sbjct: 170 HDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHI 229
Query: 236 TKRERTSYLRIMYA 249
K++R S M A
Sbjct: 230 PKKDRQSKFEEMKA 243
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 20/102 (19%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV ++ V E L + FSQ G ++S+++ R T R + G+ +V +++ + +A+
Sbjct: 66 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSL--GYAYVNYNSTSDGEKAL 123
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
LN L +P RIM++++ P L T
Sbjct: 124 EELNYTLIKGRP---------------CRIMWSQRDPALRKT 150
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 115/242 (47%), Gaps = 59/242 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL I + Q+F KFG+I S+ + Q+GKS+G+GFV YST +SA A++++
Sbjct: 232 YIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMND 291
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
V+G +LY GR Q+ K + E+ NLYVKN+ DD+D+
Sbjct: 292 KEVKGQKLYV-----GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDE 346
Query: 174 ELKQYFSQCGIISSVKIMRTNR-------------------------------------- 195
+L++ F+ G I+S K+MR
Sbjct: 347 KLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDD 406
Query: 196 -------------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S
Sbjct: 407 QDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRS 466
Query: 243 YL 244
L
Sbjct: 467 QL 468
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 101/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 139 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNG 198
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ + R + +E A+F N+Y+KNLD +++
Sbjct: 199 MLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEIS----------------- 241
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E E +Q F + G I+S + R G S+GFGFV +S D A A++ +N + LY
Sbjct: 242 -EEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLY 300
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ K ER LR Y
Sbjct: 301 VGRAQKKHEREEELRKQY 318
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 51 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 109 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDAAIDNK 150
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 151 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 210
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 211 HISKKDRQSKFEEMKA 226
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 38/120 (31%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV LD VTE +L EL FS G ++S+++ R T R +
Sbjct: 49 SLYVGELDPSVTEAML---------------YEL---FSSIGQVASIRVCRDAVTRRSL- 89
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
G+ +V ++N + RA+ LN L KP RIM++++ P L T
Sbjct: 90 -GYAYVNYNNTADGERALEDLNYTLIKGKP---------------CRIMWSQRDPALRKT 133
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 114/205 (55%), Gaps = 14/205 (6%)
Query: 52 PTFIPFT----VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESA 107
PT + FT NL+ + +L ++ ++G+I + ++ GKSKG+GF + + E+A
Sbjct: 182 PTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAA 241
Query: 108 LNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167
N +E G +YA + +I+ A + + + NLY+KNI+
Sbjct: 242 KNVVENENGKIFHGKPIYAGRAQK-KIEREAELKHTF--------ETKYQGVNLYIKNID 292
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGI-SKGFGFVCFSNPDEANRAINTLNGILFHQ 226
D +D +L++ FSQ G I+S +M+ ++ SKGFGFVC++ PDEA RA+ +NG +
Sbjct: 293 DSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGT 352
Query: 227 KPLYVAIAQTKRERTSYLRIMYAKQ 251
KPLYVA+AQ K R + L + + ++
Sbjct: 353 KPLYVALAQRKDIRRAQLEMQHQQK 377
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ L+ FS FG+I S KVV SKG+GFV Y TQESA AI K+
Sbjct: 101 FIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNG 160
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G +++ ++ + + + E+ N++ KN+++DV +LK
Sbjct: 161 MMINGQKVFVGPFKSSKERGQPT---------------EVKFTNVFFKNLSEDVGPDQLK 205
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ Q G I+++ IM ++G SKGFGF F + + A + NG +FH KP+Y AQ
Sbjct: 206 ELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQK 265
Query: 237 KRERTSYLRIMYAKQGPGL 255
K ER + L+ + + G+
Sbjct: 266 KIEREAELKHTFETKYQGV 284
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 25/198 (12%)
Query: 49 MATPTFIP-----FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYS 102
MAT F P + +L + L +IF++ G + + +V + + S Y +V Y
Sbjct: 1 MAT-NFTPISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYY 59
Query: 103 TQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY 162
A A++ L + G +A RI S +L + N++
Sbjct: 60 NGADAERALDTLNNTPIRG--------KACRIMWSQRDPSLRKSGVG----------NVF 101
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222
+KN++ +D L FS G I S K++ + SKGFGFV + + A++AI +NG+
Sbjct: 102 IKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGM 161
Query: 223 LFHQKPLYVAIAQTKRER 240
+ + + ++V ++ +ER
Sbjct: 162 MINGQKVFVGPFKSSKER 179
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 152/315 (48%), Gaps = 42/315 (13%)
Query: 7 ALNNNDSAILGTPFSLYVGDLDSTDLLRLCSA-LIASIDVHSAMATP------------- 52
AL+ N ++ G F + + D+ D + + L+ ++V+ AM P
Sbjct: 170 ALDENGNS-RGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKA 228
Query: 53 --TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNA 110
T I + N+ + + Q+FS++G+I S+ + +GK KG+GFV + +A A
Sbjct: 229 NFTNI-YVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKA 287
Query: 111 IEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNIN 167
+E+L G E + +L GR Q+ K + E++ NL++KN++
Sbjct: 288 VEEL-----NGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLD 342
Query: 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227
D +D+ +LK+ F+ G I+S ++MR G SKGFGFVCFS+P+EA +A+ N + K
Sbjct: 343 DSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGK 402
Query: 228 PLYVAIAQTKRERTSYL--------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGF 279
PLYVAIAQ K R S L +I + +Q A+ P Y P
Sbjct: 403 PLYVAIAQRKDVRRSQLAQQIQARNQIRFQQQQQQQAAAAAAGMPGQY--------MPQM 454
Query: 280 RHGGMIPNGFSSPPP 294
+G M P GF P P
Sbjct: 455 FYGVMAPRGFPGPNP 469
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 24/200 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH+ FS FG++ S KV + ++G S+G+GFV + + A +AIE +
Sbjct: 141 FIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNG 200
Query: 117 ATVEGMELYA-----PSLRAGRIQES-ASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ G+E+Y R +++E+ A+F N+YVKN+D + T+E
Sbjct: 201 MLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDE--------------- 245
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E +Q FSQ G I S + + G KGFGFV F + + A +A+ LNG F + LY
Sbjct: 246 ---EFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALY 302
Query: 231 VAIAQTKRERTSYLRIMYAK 250
V AQ K ER L+ Y +
Sbjct: 303 VGRAQKKYERAEELKKQYEQ 322
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSK---GYGFVQYSTQESALNAIEK 113
+ L I L+ +FS G I S + V +D +K GY +V Y+ E+ AI++
Sbjct: 53 YVGELDPNITEALLYDVFSPLGPI--SSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L A + G R RI S D + N+++KN++ +D
Sbjct: 111 LNYAEING--------RPCRIMWSER----------DPAIRKKGSGNIFIKNLHPAIDNK 152
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L + FS G + S K+ G S+GFGFV F +A AI +NG+L + +YVA+
Sbjct: 153 ALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAM 212
Query: 234 AQTKRERTSYLR 245
K++R S L
Sbjct: 213 HVPKKDRISKLE 224
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218
+LYV ++ ++ E L FS G ISS+++ R S G+ +V +++ + +AI
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 219 LNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL---ASTNFPV---HPTLYQRALQ 272
LN + +P RIM++++ P + S N + HP + +AL
Sbjct: 111 LNYAEINGRP---------------CRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALH 155
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 142/303 (46%), Gaps = 44/303 (14%)
Query: 59 VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118
++LA T + ++F+ FG I S + +GKSKG+GFV + E+A A+E+L
Sbjct: 255 IDLAYT--EKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKE 312
Query: 119 VEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDEIE 174
+ G ++Y GR Q+ K + V E L K NL+VKN+++ +D +
Sbjct: 313 INGQKIYV-----GRAQKKRERTEELKKQYEA-VRLEKLSKYQGVNLFVKNLDEQIDSEK 366
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
L++ F G I+S K+M + G SKGFGFVCFS P+EA +AI +N + + KPLYVA+A
Sbjct: 367 LEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALA 426
Query: 235 QTKRERTSYL----------RIMYAKQGPGLASTNFPVHPTLYQRALQVYQAPGFRHGGM 284
Q K R S L R+ A GL P P Y + G
Sbjct: 427 QRKDVRRSQLEQQIQARNQMRMQNAAAAGGLPGQFMP--PMFYG-----------QQGFF 473
Query: 285 IPNGFSSPP---PSPLFLTRA-GQAAANNLTNGNQRAAANNSMLAV-ASPDERKDILGQG 339
PNG + P P+P + R GQ R N + V P + +D GQ
Sbjct: 474 PPNGRGNAPFPGPNPQMMMRGRGQPFPEQWP----RPGPNGQPVPVYGMPPQFQDFNGQN 529
Query: 340 LYP 342
+ P
Sbjct: 530 MRP 532
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 101/198 (51%), Gaps = 24/198 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN LH FS FG I S KV G+SK +GFV Y T+E+A AIE +
Sbjct: 158 FIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNG 217
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ E+Y + R +++E A++ N+YVKN+D TE+
Sbjct: 218 MLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEK--------------- 262
Query: 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230
E ++ F+ G I+S+ + + G SKGFGFV F + A +A+ LN + + +Y
Sbjct: 263 ---EFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIY 319
Query: 231 VAIAQTKRERTSYLRIMY 248
V AQ KRERT L+ Y
Sbjct: 320 VGRAQKKRERTEELKKQY 337
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVV---VSQDGKSKGYGFVQYSTQESALNAIEK 113
+ L +++ L +IFS G + S +V VS+ KS GY +V Y E AIE+
Sbjct: 70 YVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSK--KSLGYAYVNYHKLEDGEKAIEE 127
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L VEG R RI S D D N+++KN++ +D
Sbjct: 128 LNYTPVEG--------RPCRIMWSQR----------DPSARRSGDGNIFIKNLHPAIDNK 169
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L FS G I SVK+ + G SK FGFV + + A AI ++NG+L + + +YV
Sbjct: 170 ALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGK 229
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S L M A
Sbjct: 230 HVSKKDRESKLEEMKA 245
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 41/69 (59%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL ID+ KL + F FG I SSKV+V GKSKG+GFV +ST E A AI ++
Sbjct: 354 FVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQ 413
Query: 117 ATVEGMELY 125
V G LY
Sbjct: 414 RMVNGKPLY 422
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 53/236 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F KFG+I S+ + Q+GKS+G+GFV +ST +SA A++++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMND 295
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
++G +LY GR Q+ K + E+ NLYVKN+ DDVD+
Sbjct: 296 KEIKGQKLYV-----GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 350
Query: 174 ELKQYFSQCGIISSVKIMRTN--------------------------------------- 194
+L++ FS G I+S K+MR
Sbjct: 351 KLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAK 410
Query: 195 ------RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S L
Sbjct: 411 KTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQL 466
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 143 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 199
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KNI+ +V +
Sbjct: 200 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDE 247
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R G S+GFGFV FS D A A++ +N + LYV
Sbjct: 248 EFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGR 307
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 308 AQKKHEREEELRKQY 322
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 12 DSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTF-IPFTVNL-----ASTI 65
D+ + GTP ++T+ + + +++ S ATP+ P + +L ++
Sbjct: 12 DNTVNGTP--------EATNPAATSAPEVTAVESASPSATPSANQPHSASLYVGELDPSV 63
Query: 66 DNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
L+++FS G + S + V +D +S GY +V Y+ A+E L ++G
Sbjct: 64 TEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG- 120
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+ RI S D + N+++KN++ +D L F+
Sbjct: 121 -------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 163
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V +K++R S
Sbjct: 164 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 223
Query: 243 YLRIMYA 249
M A
Sbjct: 224 KFEEMKA 230
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 116/238 (48%), Gaps = 55/238 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++F KFG+I S+ + Q+GKS+G+GFV +ST +SA A++++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMND 295
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
++G +LY GR Q+ K + E+ NLYVKN+ DDVD+
Sbjct: 296 KEIKGQKLYV-----GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 350
Query: 174 ELKQYFSQCGIISSVKIMRTN--------------------------------------- 194
+L++ FS G I+S K+MR
Sbjct: 351 KLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEE 410
Query: 195 --------RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S L
Sbjct: 411 PKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQL 468
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 143 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 199
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KNI+ +V +
Sbjct: 200 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDE 247
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R G S+GFGFV FS D A A++ +N + LYV
Sbjct: 248 EFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGR 307
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 308 AQKKHEREEELRKQY 322
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 37/247 (14%)
Query: 12 DSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIP------FTVNLASTI 65
D+ + GTP ++T+ + + +++ S TP+ + L ++
Sbjct: 12 DNTVNGTP--------EATNAAATSAPEVTAVESASPSTTPSASQPHSASLYVGELDPSV 63
Query: 66 DNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEKLYAATVEGM 122
L+++FS G + S + V +D +S GY +V Y+ A+E L ++G
Sbjct: 64 TEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKG- 120
Query: 123 ELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC 182
+ RI S D + N+++KN++ +D L F+
Sbjct: 121 -------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 163
Query: 183 GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V +K++R S
Sbjct: 164 GNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQS 223
Query: 243 YLRIMYA 249
M A
Sbjct: 224 KFEEMKA 230
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 153/353 (43%), Gaps = 77/353 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + I + ++ +KFG+ S + + +GK G+GFV Y + A+ AI+ L
Sbjct: 230 FIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSE 289
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK----NLYVKNINDDVDE 172
+G +L+A GR ++ + K + E+ L+K NLY+KN++D +D+
Sbjct: 290 TEFKGNKLFA-----GRAKKKYERADELRKQYEASRLEK-LNKYQGVNLYIKNLDDTIDD 343
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
+L+ F+ G I+S K+M G SKGFGFVC+S+P+EA +A+ +N L KPLYV
Sbjct: 344 DKLRAEFAPHGTITSAKVMVDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVV 403
Query: 233 IAQTKRERTSYLR-----------------------------IMYAKQ----GPGLASTN 259
+AQ K R S L+ + Y Q PG
Sbjct: 404 LAQRKDVRRSQLQQQIQAKNQMRLQQQAAAGGLPGQYMGNPGVFYPGQPGFMPPGRGGMP 463
Query: 260 F-----------------------PVHPTLYQRALQVYQAPGFRHGGMIPNGFSSPP--- 293
F P P +Y Q YQ GF G + G PP
Sbjct: 464 FGANPQMMMRPPMPPQNQFPPRGVPGGPNMYGAPPQGYQQGGFPPQGPMRGG--QPPRSG 521
Query: 294 -PSPLFLTRAGQAAANNLTNGNQRAAANNSMLAVASPDER-KDILGQGLYPLV 344
P P R A +G R A + S +P+E+ K ++G+ LYP V
Sbjct: 522 QPGPQGQFR----GAPRRKDGESRVADSISNALENAPEEQHKQLVGEALYPKV 570
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 16/194 (8%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL IDN LH FS FG I S K+ + G S+G+GFV Y + ESA +AI+ +
Sbjct: 137 YIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNG 196
Query: 117 ATVEGMELY-APSL-RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174
+ +++ P + ++ R+Q N + N+++KN+ ++ E E
Sbjct: 197 MLLNDKKVFVGPHVPKSDRMQSFEEQKNSFT--------------NVFIKNLGTEITEAE 242
Query: 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234
++ ++ G SSV + + G GFGFV + D A +AI+ L+ F L+ A
Sbjct: 243 FEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRA 302
Query: 235 QTKRERTSYLRIMY 248
+ K ER LR Y
Sbjct: 303 KKKYERADELRKQY 316
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L +IF+ G + S V V +D +S GY +V + Q + A+E+
Sbjct: 49 YVGELDPSVTEAMLFEIFNPIGPVTS--VRVCRDAITRRSLGYAYVNFHNQADGIRALEE 106
Query: 114 LYAATVEGMELYAP-SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDE 172
L Y+P R RI S D + N+Y+KN++ +D
Sbjct: 107 LN---------YSPIKERPCRIMWSQR----------DPALRKTGAGNIYIKNLDPAIDN 147
Query: 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
L FS G I S KI G S+GFGFV + + + A AI +NG+L + K ++V
Sbjct: 148 KALHDTFSAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVG 207
Query: 233 IAQTKRER 240
K +R
Sbjct: 208 PHVPKSDR 215
Score = 38.5 bits (88), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 38/146 (26%)
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
AA EG S G ++ +LYV LD VTE +L E+
Sbjct: 21 AAPAEGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAML---------------FEI 65
Query: 176 KQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232
F+ G ++SV++ R T R + G+ +V F N + RA+ LN ++P
Sbjct: 66 ---FNPIGPVTSVRVCRDAITRRSL--GYAYVNFHNQADGIRALEELNYSPIKERP---- 116
Query: 233 IAQTKRERTSYLRIMYAKQGPGLAST 258
RIM++++ P L T
Sbjct: 117 -----------CRIMWSQRDPALRKT 131
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 101/199 (50%), Gaps = 25/199 (12%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL + IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+ +
Sbjct: 146 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNG 205
Query: 117 ATVEGMELY-----APSLRAGRIQE-SASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170
+ +++ A R + +E A+F N+YVKN+D D TEE
Sbjct: 206 MLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEE--------------- 250
Query: 171 DEIELKQYFSQCGIISSVKIMR-TNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
E + F + G I+S + R G S+GFGFV F++ D A A+ LN F + L
Sbjct: 251 ---EFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307
Query: 230 YVAIAQTKRERTSYLRIMY 248
YV AQ K ER LR Y
Sbjct: 308 YVGRAQKKHEREEELRKQY 326
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 52/241 (21%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVV-SQDGKSKGYGFVQYSTQESALNAIEKLY 115
+ N+ + +F KFG+I S+ + ++ GKS+G+GFV +++ ++A A+E L
Sbjct: 239 YVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Query: 116 AATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEILD- 158
+G +LY LR A RI++++ + NLY+KNL DD+ +E L
Sbjct: 299 DKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRE 358
Query: 159 --------------KNLYVKNINDDVDEIE---------LKQYFSQCGIISSVKIMRTNR 195
++ ++ +D E + ++ + G + K + N+
Sbjct: 359 LFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKENK 418
Query: 196 -----------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244
G SKGFGFVCFS+PDEA++A+ +N + H KPLYVA+AQ K R S L
Sbjct: 419 AESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQL 478
Query: 245 R 245
Sbjct: 479 E 479
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L ++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 58 YVGELDPSVTEAMLFELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G R RI S D + N+++KN++ +D
Sbjct: 116 LNYTLIKG--------RPCRIMWSQR----------DPALRKTGQGNVFIKNLDTAIDNK 157
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + A AI +NG+L + K ++V
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGH 217
Query: 234 AQTKRERTSYLRIMYA 249
K++R S M A
Sbjct: 218 HIAKKDRQSKFEEMKA 233
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 104/179 (58%), Gaps = 3/179 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N +D+ +L +FSK+G S KV+ GKSKG+GFV + + E+A A+E++
Sbjct: 193 YIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNG 252
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G ++ + +++ A ++ + L + LY+KN++D +D+ +L+
Sbjct: 253 RDINGQLIFVGRAQK-KVERQAELKQMF-EQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G IS VK+M+ G SKGFG +CFS+P++A +A+ +NG + KPL +A+AQ
Sbjct: 311 NEFSSFGSISRVKVMQEE-GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L++ FS FG I SSKV+ S D SKGY FV + Q +A AIE++
Sbjct: 101 FIKNLDKSIDNKTLYEHFSAFGKILSSKVM-SDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
++G +++ + + +E+ +++ + T N+Y+KN D+D+ LK
Sbjct: 160 KLLKGCKVFVGRFKNRKDREAE------LRSKASEFT------NVYIKNFGGDMDDERLK 207
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
FS+ G SVK+M + G SKGFGFV F + + A +A+ +NG + + ++V AQ
Sbjct: 208 DVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQK 267
Query: 237 KRERTSYLRIMY 248
K ER + L+ M+
Sbjct: 268 KVERQAELKQMF 279
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L ++FS G I S K+M ++G SKG+ FV F N A+RAI +
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 157
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG L ++V + +++R + LR
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELR 183
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 27/107 (25%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV +L DVTE++L + FS G + S++I R T R +
Sbjct: 11 SLYVGDLHADVTEDLLFRK------------------FSTVGPVLSIRICRDQVTRRSL- 51
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLR 245
G+ +V F +A +A++T+N + K + + +Q R +YLR
Sbjct: 52 -GYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQ----RDAYLR 93
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 129/266 (48%), Gaps = 30/266 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + ++F K+G I S+ + +GK +G+GFV + +A A+++L
Sbjct: 222 YVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNE 281
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+G +LY GR Q+ K + E++ NL+VKN++D +D+
Sbjct: 282 LEFKGQKLYV-----GRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDE 336
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+LK+ F+ G I+S K+MR G S+GFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 337 KLKEEFAPFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 396
Query: 234 AQTKRERTSYL----------RIMYAKQGPGLASTNFP---VHPTLYQRALQ---VYQAP 277
AQ K R + L R +A A P + P +Y + +Q P
Sbjct: 397 AQRKEVRRNQLAQQIQARNQMRFQHANAAAAAAVAGLPGQFMPPPMYYGGIPPRVPFQGP 456
Query: 278 GFRHGGMIPNGFSSPP-----PSPLF 298
+ GM NG + PP P P++
Sbjct: 457 NPQMAGMPKNG-AMPPQQFGRPGPMY 481
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL IDN LH+ FS FG+I S KV ++G S+G+GFV + + A +AIE +
Sbjct: 129 YIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDG 188
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVT-EEILDK--NLYVKNINDDVDEI 173
+ E+Y L+V D EE+ K N+YVKNI+ + +
Sbjct: 189 MLMNDQEVYVA---------------LHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQE 233
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + + + G +GFGFV F + A +A++ LN + F + LYV
Sbjct: 234 EFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGR 293
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER L+ Y
Sbjct: 294 AQKKYERLQELKKQY 308
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY 115
+ L T+ L+ IFS G + S +V S GY +V + E+ AIE+L
Sbjct: 41 YVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLN 100
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L K N+Y+KN++ +D L
Sbjct: 101 YTLIKG--------KPCRIMWSQRDPSLRKKG----------SGNIYIKNLHPAIDNKSL 142
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
+ FS G I S K+ G+S+GFGFV F N +A AI ++G+L + + +YVA+
Sbjct: 143 HETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHV 202
Query: 236 TKRERTSYLRIMYAK 250
+K++R S L + AK
Sbjct: 203 SKKDRQSKLEEVKAK 217
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 26/122 (21%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGISKGFGFVCFSNPDEANRAI 216
+LYV + V E L FS G +SS+++ R TN S G+ +V F + + +AI
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITN--TSLGYAYVNFHDHEAGPKAI 96
Query: 217 NTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGL---ASTNFPV---HPTLYQRA 270
LN L KP RIM++++ P L S N + HP + ++
Sbjct: 97 EQLNYTLIKGKP---------------CRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKS 141
Query: 271 LQ 272
L
Sbjct: 142 LH 143
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 140 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 196
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KNI+ DV E
Sbjct: 197 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEE 244
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R G S+GFGFV FS + A A++ +N + LYV
Sbjct: 245 EFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGR 304
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 305 AQKKHEREEELRKQY 319
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 58/246 (23%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + ++F KFG+I S+ + Q+GKS+G+GFV +ST ESA A++++
Sbjct: 233 YIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNE 292
Query: 117 ATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNLDDDVTEEIL--- 157
+ +LY LR A R+++++ + NLYVKNL DDV +E L
Sbjct: 293 KEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLREL 352
Query: 158 --------------DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIM------------ 191
D N+ + E E K+ + SS
Sbjct: 353 FGPYGTITSAKVMRDTNIERTQTPESDKEKENKEATKENEKESSEAEKAEKTEEKPADSG 412
Query: 192 -------------RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238
+ G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K
Sbjct: 413 DEKKEDKESKKADKKGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
Query: 239 ERTSYL 244
R S L
Sbjct: 473 VRRSQL 478
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 52 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 110 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 151
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 152 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 211
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 212 HISKKDRQSKFEEMKA 227
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 38/120 (31%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV LD VTE +L EL FS G ++S+++ R T R +
Sbjct: 50 SLYVGELDPSVTEAML---------------YEL---FSSIGQVASIRVCRDAVTRRSL- 90
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
G+ +V ++N + RA+ LN L KP RIM++++ P L T
Sbjct: 91 -GYAYVNYNNTADGERALEDLNYTLIKGKP---------------CRIMWSQRDPALRKT 134
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 113/243 (46%), Gaps = 59/243 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ +++ + ++F KFG+I S+ + +GKS+G+GFV +ST ESA A+E++
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMND 285
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
V +LY GR Q+ K + E+ NLYVKN+ DDVD+
Sbjct: 286 KEVRSQKLYV-----GRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDD 340
Query: 174 ELKQYFSQCGIISSVKIMRTNRGI------------------------------------ 197
+L++ F G I+S K+MR +
Sbjct: 341 KLRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEE 400
Query: 198 ---------------SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242
SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R S
Sbjct: 401 KKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRS 460
Query: 243 YLR 245
L
Sbjct: 461 QLE 463
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 99/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 133 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKH--- 189
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KNI+ +V++
Sbjct: 190 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDE 237
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R + G S+GFGFV FS + A A+ +N + LYV
Sbjct: 238 EFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGR 297
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 298 AQKKHEREEELRKQY 312
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+++
Sbjct: 45 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 103 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 144
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G+SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 145 ALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 204
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 205 HISKKDRQSKFEEMKA 220
Score = 38.5 bits (88), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 38/120 (31%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV LD VTE + L + FS G ++S+++ R T R +
Sbjct: 43 SLYVGELDPSVTEAM------------------LYELFSSIGQVASIRVCRDAVTRRSL- 83
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
G+ +V +++ RA++ LN L KP RIM++++ P L T
Sbjct: 84 -GYAYVNYNDTAHGERALDELNYTLIKGKP---------------CRIMWSQRDPALRKT 127
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 117 bits (294), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 102/192 (53%), Gaps = 12/192 (6%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL IDN L+ FS FG+I SSKV + GKSKG+G+V + ESA AI+ L
Sbjct: 126 FIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNG 185
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+ G E+Y + + +ES + + + T N+Y+KNIN + + E +
Sbjct: 186 MLLNGQEIYVGPHLSKKERESK------FEEMKANFT------NVYIKNINTETTDKEFE 233
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ ++ G SV + RT G +KGFGFV F N ++A + + LN F +PLYV AQ
Sbjct: 234 ELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQK 293
Query: 237 KRERTSYLRIMY 248
K ER L+ Y
Sbjct: 294 KYERQQELKKQY 305
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 8/191 (4%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + + ++ +KFG S + + +G++KG+GFV + E A+ +E+L
Sbjct: 219 YIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNN 278
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
+G LY R Q+ K + E++ NL++KN++D +D+
Sbjct: 279 TEFKGQPLYV-----NRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDK 333
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
+L++ F+ G I+S K+M T G SKGFGFVCFS P+EA +AI N + KPLYVAI
Sbjct: 334 KLEEEFAPYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 393
Query: 234 AQTKRERTSYL 244
AQ K R S L
Sbjct: 394 AQRKDVRRSQL 404
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 93/194 (47%), Gaps = 19/194 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLY 115
+ +L ++ L+ IFS G + S +V K S GY +V ++ ++A AIEKL
Sbjct: 38 YVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLN 97
Query: 116 AATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIEL 175
++G + RI S +L K N+++KN++ D+D L
Sbjct: 98 FTPIKG--------KLCRIMWSQRDPSLRKKGAG----------NIFIKNLHPDIDNKAL 139
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
FS G I S K+ G SKGFG+V F + A+ AI+ LNG+L + + +YV
Sbjct: 140 YDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHL 199
Query: 236 TKRERTSYLRIMYA 249
+K+ER S M A
Sbjct: 200 SKKERESKFEEMKA 213
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 26/126 (20%)
Query: 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK---GFGFVCFSNPDE 211
E + +LYV +++ V E L FS G +SS+++ R I+K G+ +V F++ D
Sbjct: 31 ETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRD--AITKTSLGYAYVNFNDHDA 88
Query: 212 ANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLASTNFP------VHPT 265
A AI LN + I + RIM++++ P L +HP
Sbjct: 89 AKTAIEKLN---------FTPI------KGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPD 133
Query: 266 LYQRAL 271
+ +AL
Sbjct: 134 IDNKAL 139
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 145 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 201
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD---KNLYVKNINDDVDEI 173
V GM L + F ++ D E + N+Y+KN++ ++D+
Sbjct: 202 --VNGMLL----------NDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDD 249
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
E ++ F + G I+S + R G S+GFGFV FS + A A+ +N + LYV
Sbjct: 250 EFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGR 309
Query: 234 AQTKRERTSYLRIMY 248
AQ K ER LR Y
Sbjct: 310 AQKKHEREEELRKQY 324
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 55/243 (22%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ NL S ID+ + ++F KFG+I S+ + Q+GKS+G+GFV +ST ESA A+E++
Sbjct: 238 YIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMND 297
Query: 117 ATVEGMELYA----------PSLR----AGRIQESASFN--NLYVKNL----DDDVTEE- 155
+ +LY LR A R+++++ + NLYVKNL DD+ E
Sbjct: 298 KEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREL 357
Query: 156 ------------ILDKNLYVKNIND------DVDEIELKQYFSQCGII------------ 185
+ D N+ D + D+ K+ +
Sbjct: 358 FGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKPSESSE 417
Query: 186 ----SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241
+ K + G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R
Sbjct: 418 EKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRR 477
Query: 242 SYL 244
S L
Sbjct: 478 SQL 480
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 57 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 115 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 156
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 157 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 216
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 217 HISKKDRQSKFEEMKA 232
Score = 39.3 bits (90), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 38/120 (31%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV LD VTE +L EL FS G ++S+++ R T R +
Sbjct: 55 SLYVGELDPSVTEAML---------------YEL---FSSIGQVASIRVCRDAVTRRSL- 95
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
G+ +V ++N + RA+ LN L KP RIM++++ P L T
Sbjct: 96 -GYAYVNYNNTADGERALEDLNYTLIKGKP---------------CRIMWSQRDPALRKT 139
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 100/193 (51%), Gaps = 14/193 (7%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL S IDN LH F+ FG+I S KV + G SKGYGFV Y T E+A NAI+
Sbjct: 142 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKH--- 198
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILD-KNLYVKNINDDVDEIEL 175
V GM L + G +++ K+ E + N+Y+KNI+ DV E E
Sbjct: 199 --VNGMLLNDKKVFVG--------HHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEF 248
Query: 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235
++ F Q G I+S + R G S+GFGFV +S + A A++ ++ + LYV AQ
Sbjct: 249 RKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQ 308
Query: 236 TKRERTSYLRIMY 248
K ER LR Y
Sbjct: 309 KKHEREEELRKQY 321
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 111/245 (45%), Gaps = 61/245 (24%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
+ N+ + + +IF +FG+I S+ + +GKS+G+GFV YST ESA A+++++
Sbjct: 235 YIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMHD 294
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDK---NLYVKNINDDVDEI 173
V+ +LY GR Q+ K + E+ NLYVKN+ DDVD+
Sbjct: 295 KEVKTQKLYV-----GRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDE 349
Query: 174 ELKQYFSQCGIIS-------SVKIMRTNR------------------------------- 195
+L++ F G I+ S RT
Sbjct: 350 KLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESD 409
Query: 196 ---------------GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240
G SKGFGFVCFS+PDEA++A+ +N + + KPLYVA+AQ K R
Sbjct: 410 EEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 469
Query: 241 TSYLR 245
S L
Sbjct: 470 RSQLE 474
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 23/196 (11%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG---KSKGYGFVQYSTQESALNAIEK 113
+ L ++ L+++FS G + S + V +D +S GY +V Y+ A+E
Sbjct: 54 YVGELDPSVTEAMLYELFSSIGQVAS--IRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 114 LYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173
L ++G + RI S D + N+++KN++ +D
Sbjct: 112 LNYTLIKG--------KPCRIMWSQR----------DPALRKTGQGNVFIKNLDSAIDNK 153
Query: 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233
L F+ G I S K+ + G SKG+GFV + + AN AI +NG+L + K ++V
Sbjct: 154 ALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 213
Query: 234 AQTKRERTSYLRIMYA 249
+K++R S M A
Sbjct: 214 HISKKDRQSKFDEMKA 229
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 38/120 (31%)
Query: 142 NLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMR---TNRGIS 198
+LYV LD VTE +L EL FS G ++S+++ R T R +
Sbjct: 52 SLYVGELDPSVTEAML---------------YEL---FSSIGQVASIRVCRDAVTRRSL- 92
Query: 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYAKQGPGLAST 258
G+ +V ++N + RA+ LN L KP RIM++++ P L T
Sbjct: 93 -GYAYVNYNNTADGERALEDLNYTLIKGKP---------------CRIMWSQRDPALRKT 136
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRAINTLNG 221
V +++ DV E L + F G + +I R S G+G+V F P +A A+NT+N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 222 ILFHQKPLYVAIAQ 235
L + KP + +Q
Sbjct: 82 DLINGKPFRLMWSQ 95
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRAINTLNG 221
V +++ DV E L + F G + +I R S G+G+V F P +A A+NT+N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 222 ILFHQKPLYVAIAQ 235
L + KP + +Q
Sbjct: 82 DLINGKPFRLMWSQ 95
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRAINTLNG 221
V +++ DV E L + F G + +I R S G+G+V F P +A A+NT+N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 222 ILFHQKPLYVAIAQ 235
L + KP + +Q
Sbjct: 82 DLINGKPFRLMWSQ 95
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRAINTLNG 221
V +++ DV E L + F G + +I R S G+G+V F P +A A+NT+N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 222 ILFHQKPLYVAIAQ 235
L + KP + +Q
Sbjct: 82 DLINGKPFRLMWSQ 95
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRAINTLNG 221
V +++ DV E L + F G + +I R S G+G+V F P +A A+NT+N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 222 ILFHQKPLYVAIAQ 235
L + KP + +Q
Sbjct: 82 DLINGKPFRLMWSQ 95
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 104/182 (57%), Gaps = 3/182 (1%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F N+ ID+ KL ++F ++G +S KV+ GKSKG+GFV+Y T E+A A+ L+
Sbjct: 202 FVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHG 261
Query: 117 ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELK 176
+++G LY RA + E + + L +Y+KN+++ +++ +LK
Sbjct: 262 KSIDGKVLYVG--RAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLK 319
Query: 177 QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236
+ FS G IS K+M G KGFG VCFS+ +EA +A++ +NG + KPL+V + Q
Sbjct: 320 EEFSSFGSISRAKVM-MEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQA 378
Query: 237 KR 238
+R
Sbjct: 379 RR 380
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 57 FTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116
F NL +IDN L +FS FG+I S KVV +G SKGY +V + + +A AI +
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNG 167
Query: 117 ATVEGMELYA-----PSLRAG--RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169
+ ++Y P RA R ++ A+F N++VKN I DD
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKN------------------IGDD 209
Query: 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229
+D+ +LK+ F + G SVK++R G SKGFGFV + + A +A+ L+G K L
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 230 YVAIAQTKRER 240
YV AQ K ER
Sbjct: 270 YVGRAQKKIER 280
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219
N+++KN++ +D L FS G I S K++ + G SKG+ +V F + ANRAI +
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 220 NGILFHQKPLYVAIAQTKRERTSYLR 245
NG+ + + +YV + ER + +R
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAAEVR 191
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISK-GFGFVCFSNPDEANRAINTLNG 221
V +++ DV E L + F G + +I R S G+G+V F P +A A+NT+N
Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNF 81
Query: 222 ILFHQKPLYVAIAQ 235
L + KP + +Q
Sbjct: 82 DLINGKPFRLMWSQ 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,785,532
Number of Sequences: 539616
Number of extensions: 5346883
Number of successful extensions: 18002
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 464
Number of HSP's that attempted gapping in prelim test: 15211
Number of HSP's gapped (non-prelim): 2126
length of query: 354
length of database: 191,569,459
effective HSP length: 118
effective length of query: 236
effective length of database: 127,894,771
effective search space: 30183165956
effective search space used: 30183165956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)