Query 036905
Match_columns 354
No_of_seqs 384 out of 2250
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:33:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 7E-50 1.5E-54 399.3 33.3 247 4-250 29-377 (562)
2 KOG0148 Apoptosis-promoting RN 100.0 1.2E-36 2.7E-41 259.3 20.8 181 50-242 59-243 (321)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.5E-35 1.2E-39 276.1 26.3 236 4-239 32-351 (352)
4 TIGR01659 sex-lethal sex-letha 100.0 6.9E-35 1.5E-39 270.7 24.2 173 48-240 102-278 (346)
5 KOG0145 RNA-binding protein EL 100.0 1.2E-33 2.6E-38 239.7 16.2 228 10-237 77-358 (360)
6 TIGR01645 half-pint poly-U bin 100.0 6.9E-33 1.5E-37 270.1 20.9 180 51-239 105-286 (612)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.9E-32 1.9E-36 254.2 23.3 168 52-239 2-173 (352)
8 TIGR01628 PABP-1234 polyadenyl 100.0 7.5E-32 1.6E-36 269.5 21.9 187 55-241 2-265 (562)
9 KOG0123 Polyadenylate-binding 100.0 3.9E-32 8.4E-37 253.6 18.0 244 3-251 26-363 (369)
10 KOG0117 Heterogeneous nuclear 100.0 4.3E-31 9.3E-36 239.6 23.4 217 5-243 113-337 (506)
11 KOG0144 RNA-binding protein CU 100.0 5.3E-32 1.2E-36 244.4 16.3 178 48-244 29-213 (510)
12 TIGR01622 SF-CC1 splicing fact 100.0 2.7E-30 5.8E-35 252.4 22.2 179 50-237 86-266 (457)
13 TIGR01648 hnRNP-R-Q heterogene 100.0 6.9E-30 1.5E-34 248.9 23.7 214 4-239 87-309 (578)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4E-29 8.7E-34 247.4 23.2 226 13-238 220-503 (509)
15 KOG0145 RNA-binding protein EL 100.0 2.4E-29 5.2E-34 213.6 13.2 172 50-241 38-213 (360)
16 KOG0131 Splicing factor 3b, su 100.0 4.6E-29 1E-33 201.6 12.5 171 51-240 7-180 (203)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.1E-27 2.5E-32 234.2 24.5 217 15-238 37-352 (481)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.7E-28 2.1E-32 234.7 21.4 182 51-237 273-480 (481)
19 KOG0144 RNA-binding protein CU 100.0 1.5E-28 3.2E-33 222.1 10.8 227 12-238 72-505 (510)
20 TIGR01622 SF-CC1 splicing fact 100.0 1.5E-26 3.2E-31 226.1 25.5 226 11-239 126-450 (457)
21 TIGR01648 hnRNP-R-Q heterogene 100.0 3.8E-27 8.2E-32 229.8 18.9 162 51-238 56-223 (578)
22 KOG0127 Nucleolar protein fibr 99.9 3.8E-27 8.2E-32 218.5 16.9 186 54-239 6-198 (678)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-26 2.7E-31 229.6 20.9 184 48-237 170-375 (509)
24 KOG0127 Nucleolar protein fibr 99.9 2.9E-26 6.3E-31 212.7 21.6 233 11-243 42-384 (678)
25 KOG0109 RNA-binding protein LA 99.9 2.5E-27 5.3E-32 204.5 10.2 151 54-240 3-153 (346)
26 KOG0123 Polyadenylate-binding 99.9 1.8E-26 3.8E-31 215.6 16.5 161 54-246 2-162 (369)
27 KOG0117 Heterogeneous nuclear 99.9 4.5E-26 9.7E-31 207.1 16.4 163 51-239 81-250 (506)
28 KOG0146 RNA-binding protein ET 99.9 1.5E-26 3.3E-31 197.3 9.3 190 52-241 18-369 (371)
29 TIGR01645 half-pint poly-U bin 99.9 2.8E-24 6E-29 210.1 24.3 119 11-129 144-281 (612)
30 KOG0124 Polypyrimidine tract-b 99.9 1.1E-24 2.3E-29 193.3 10.3 175 53-237 113-290 (544)
31 KOG0110 RNA-binding protein (R 99.9 2.3E-23 4.9E-28 199.4 14.0 179 54-243 516-699 (725)
32 KOG4205 RNA-binding protein mu 99.9 3.9E-23 8.5E-28 186.7 10.6 174 52-242 5-181 (311)
33 KOG0148 Apoptosis-promoting RN 99.9 2.1E-22 4.5E-27 172.5 11.1 142 50-240 3-145 (321)
34 KOG0147 Transcriptional coacti 99.9 1.1E-22 2.4E-27 190.0 8.0 185 47-238 173-359 (549)
35 KOG0147 Transcriptional coacti 99.8 1.5E-20 3.3E-25 175.7 14.2 184 51-238 276-529 (549)
36 KOG4212 RNA-binding protein hn 99.8 6.5E-19 1.4E-23 160.0 17.0 184 52-235 43-292 (608)
37 KOG0105 Alternative splicing f 99.8 1.7E-18 3.7E-23 140.6 13.7 175 51-233 4-186 (241)
38 KOG4206 Spliceosomal protein s 99.8 3.9E-18 8.5E-23 143.7 16.0 180 50-235 6-220 (221)
39 KOG0124 Polypyrimidine tract-b 99.8 2.1E-17 4.5E-22 147.2 17.7 223 12-234 151-532 (544)
40 TIGR01659 sex-lethal sex-letha 99.8 9E-18 1.9E-22 156.4 14.3 127 4-130 136-273 (346)
41 PLN03134 glycine-rich RNA-bind 99.8 7.1E-18 1.5E-22 137.9 11.4 82 157-238 33-115 (144)
42 PLN03134 glycine-rich RNA-bind 99.7 7.1E-18 1.5E-22 137.9 10.6 82 50-131 31-113 (144)
43 KOG0110 RNA-binding protein (R 99.7 1.6E-17 3.5E-22 159.6 13.5 182 49-235 381-596 (725)
44 KOG4212 RNA-binding protein hn 99.7 8E-17 1.7E-21 146.5 15.6 119 10-128 171-290 (608)
45 KOG1548 Transcription elongati 99.7 2.6E-16 5.7E-21 139.6 17.1 182 51-235 132-350 (382)
46 KOG0106 Alternative splicing f 99.7 1.6E-17 3.4E-22 141.6 7.4 171 54-239 2-173 (216)
47 KOG4211 Splicing factor hnRNP- 99.7 3.4E-16 7.5E-21 144.9 15.9 180 50-242 7-187 (510)
48 PF00076 RRM_1: RNA recognitio 99.7 9.1E-17 2E-21 114.9 9.3 70 56-125 1-70 (70)
49 KOG1457 RNA binding protein (c 99.7 8.2E-16 1.8E-20 128.7 13.7 175 48-225 29-274 (284)
50 PF00076 RRM_1: RNA recognitio 99.7 4.1E-16 8.9E-21 111.5 10.3 70 161-230 1-70 (70)
51 KOG0120 Splicing factor U2AF, 99.7 4E-16 8.7E-21 148.0 12.9 188 51-238 287-493 (500)
52 COG0724 RNA-binding proteins ( 99.6 1.6E-15 3.6E-20 137.3 13.2 166 53-218 115-286 (306)
53 KOG0149 Predicted RNA-binding 99.6 5.9E-16 1.3E-20 130.9 7.0 79 51-130 10-89 (247)
54 KOG0125 Ataxin 2-binding prote 99.6 1.5E-15 3.3E-20 133.9 9.0 80 158-238 96-175 (376)
55 PF14259 RRM_6: RNA recognitio 99.6 3.4E-15 7.3E-20 107.0 9.2 70 56-125 1-70 (70)
56 PF14259 RRM_6: RNA recognitio 99.6 9.5E-15 2.1E-19 104.6 10.6 70 161-230 1-70 (70)
57 KOG0122 Translation initiation 99.6 4.5E-15 9.8E-20 126.0 9.2 81 157-237 188-269 (270)
58 KOG0122 Translation initiation 99.6 4.5E-15 9.7E-20 126.1 9.0 81 51-131 187-268 (270)
59 KOG0149 Predicted RNA-binding 99.6 2.7E-15 5.8E-20 127.0 7.0 77 159-236 13-90 (247)
60 KOG0125 Ataxin 2-binding prote 99.6 5.7E-15 1.2E-19 130.3 8.3 84 47-131 90-173 (376)
61 KOG1365 RNA-binding protein Fu 99.6 7E-14 1.5E-18 125.7 15.1 237 5-242 90-367 (508)
62 KOG1190 Polypyrimidine tract-b 99.6 9.1E-14 2E-18 125.9 15.8 177 53-236 297-490 (492)
63 KOG0131 Splicing factor 3b, su 99.6 1.1E-14 2.3E-19 118.6 8.4 119 13-131 48-176 (203)
64 PLN03120 nucleic acid binding 99.5 3.2E-14 6.9E-19 124.6 10.3 75 159-236 5-79 (260)
65 KOG4207 Predicted splicing fac 99.5 7.3E-15 1.6E-19 121.7 5.9 79 159-237 14-93 (256)
66 PLN03120 nucleic acid binding 99.5 4.2E-14 9E-19 123.9 9.6 76 53-131 4-79 (260)
67 KOG0107 Alternative splicing f 99.5 3.2E-14 7E-19 115.1 6.9 76 52-131 9-84 (195)
68 KOG4211 Splicing factor hnRNP- 99.5 8.4E-13 1.8E-17 122.7 16.0 221 11-234 44-355 (510)
69 KOG0113 U1 small nuclear ribon 99.5 9.8E-14 2.1E-18 121.1 9.3 90 39-128 87-177 (335)
70 smart00362 RRM_2 RNA recogniti 99.5 2E-13 4.2E-18 97.3 9.4 72 160-232 1-72 (72)
71 KOG0107 Alternative splicing f 99.5 8.6E-14 1.9E-18 112.6 7.5 77 158-238 10-86 (195)
72 smart00362 RRM_2 RNA recogniti 99.5 2.8E-13 6E-18 96.5 9.1 71 55-126 1-71 (72)
73 KOG0121 Nuclear cap-binding pr 99.5 1.1E-13 2.5E-18 106.1 7.2 84 156-239 34-118 (153)
74 KOG0126 Predicted RNA-binding 99.5 6.2E-15 1.3E-19 119.7 0.2 77 159-235 36-113 (219)
75 KOG0126 Predicted RNA-binding 99.5 4.3E-15 9.3E-20 120.7 -0.9 79 52-130 34-113 (219)
76 KOG0121 Nuclear cap-binding pr 99.5 1.4E-13 3E-18 105.6 7.2 80 51-130 34-114 (153)
77 PLN03121 nucleic acid binding 99.5 2.5E-13 5.4E-18 117.1 9.6 76 52-130 4-79 (243)
78 KOG4207 Predicted splicing fac 99.5 9.6E-14 2.1E-18 115.1 6.5 85 49-133 9-94 (256)
79 KOG1190 Polypyrimidine tract-b 99.5 2.1E-12 4.5E-17 117.2 15.1 178 53-238 150-374 (492)
80 KOG0129 Predicted RNA-binding 99.5 9.5E-13 2.1E-17 123.1 13.3 166 49-218 255-432 (520)
81 KOG0114 Predicted RNA-binding 99.5 3.3E-13 7.1E-18 99.7 8.1 79 49-129 14-92 (124)
82 PLN03213 repressor of silencin 99.4 3E-13 6.4E-18 125.3 9.4 77 159-238 11-89 (759)
83 KOG0113 U1 small nuclear ribon 99.4 3.7E-13 8.1E-18 117.5 9.2 82 156-237 99-181 (335)
84 smart00360 RRM RNA recognition 99.4 5.4E-13 1.2E-17 94.6 8.3 69 58-126 1-70 (71)
85 KOG0114 Predicted RNA-binding 99.4 9.5E-13 2.1E-17 97.3 9.6 79 159-239 19-97 (124)
86 KOG0108 mRNA cleavage and poly 99.4 6.5E-14 1.4E-18 132.4 4.5 78 54-131 19-97 (435)
87 PLN03121 nucleic acid binding 99.4 7.6E-13 1.6E-17 114.1 10.1 75 159-236 6-80 (243)
88 cd00590 RRM RRM (RNA recogniti 99.4 2E-12 4.3E-17 92.5 10.4 74 160-233 1-74 (74)
89 smart00360 RRM RNA recognition 99.4 8.6E-13 1.9E-17 93.5 8.3 70 163-232 1-71 (71)
90 KOG0111 Cyclophilin-type pepti 99.4 1.2E-13 2.5E-18 115.6 4.2 83 158-240 10-93 (298)
91 cd00590 RRM RRM (RNA recogniti 99.4 1.9E-12 4.1E-17 92.6 9.7 73 55-127 1-73 (74)
92 KOG0108 mRNA cleavage and poly 99.4 8.2E-13 1.8E-17 125.0 8.9 85 159-243 19-104 (435)
93 KOG0132 RNA polymerase II C-te 99.4 7E-12 1.5E-16 122.0 15.3 76 51-131 419-494 (894)
94 KOG0111 Cyclophilin-type pepti 99.4 2.5E-13 5.5E-18 113.5 4.3 86 49-134 6-92 (298)
95 PLN03213 repressor of silencin 99.4 1.3E-12 2.8E-17 121.1 8.9 78 51-131 8-87 (759)
96 KOG0130 RNA-binding protein RB 99.4 8.1E-13 1.8E-17 102.3 6.3 79 159-237 73-152 (170)
97 KOG0130 RNA-binding protein RB 99.4 3.8E-13 8.3E-18 104.1 4.5 84 48-131 67-151 (170)
98 PF13893 RRM_5: RNA recognitio 99.4 2.8E-12 6.1E-17 87.5 8.0 56 175-234 1-56 (56)
99 KOG1456 Heterogeneous nuclear 99.3 7E-11 1.5E-15 106.3 17.6 185 48-237 282-491 (494)
100 smart00361 RRM_1 RNA recogniti 99.3 4.8E-12 1E-16 90.5 8.2 61 172-232 2-70 (70)
101 COG0724 RNA-binding proteins ( 99.3 5.3E-12 1.1E-16 114.2 10.0 79 158-236 115-194 (306)
102 KOG1456 Heterogeneous nuclear 99.3 7E-11 1.5E-15 106.3 16.3 172 58-237 127-363 (494)
103 KOG0146 RNA-binding protein ET 99.3 3.6E-12 7.8E-17 109.7 7.8 93 159-251 20-115 (371)
104 KOG0109 RNA-binding protein LA 99.3 2.4E-12 5.2E-17 112.1 6.6 108 16-130 36-148 (346)
105 smart00361 RRM_1 RNA recogniti 99.3 6.8E-12 1.5E-16 89.7 7.8 60 67-126 2-69 (70)
106 KOG0120 Splicing factor U2AF, 99.3 3.5E-12 7.6E-17 121.4 7.7 185 49-239 171-371 (500)
107 KOG4454 RNA binding protein (R 99.3 6.1E-13 1.3E-17 111.3 0.7 142 50-225 6-151 (267)
108 KOG0226 RNA-binding proteins [ 99.2 4.8E-12 1E-16 108.3 4.3 173 52-238 95-271 (290)
109 KOG4206 Spliceosomal protein s 99.2 1.6E-11 3.4E-16 104.0 7.1 85 159-245 10-98 (221)
110 KOG0105 Alternative splicing f 99.2 1.3E-11 2.9E-16 100.7 6.1 79 158-238 6-84 (241)
111 PF13893 RRM_5: RNA recognitio 99.2 3.4E-11 7.4E-16 82.1 6.7 55 70-128 1-55 (56)
112 KOG4307 RNA binding protein RB 99.2 7.8E-11 1.7E-15 113.4 8.5 75 159-233 868-943 (944)
113 KOG4210 Nuclear localization s 99.2 4.2E-11 9.2E-16 108.4 5.7 178 51-240 86-267 (285)
114 KOG0415 Predicted peptidyl pro 99.1 5.9E-11 1.3E-15 106.0 6.5 81 159-239 240-321 (479)
115 KOG0128 RNA-binding protein SA 99.1 2.5E-12 5.4E-17 126.5 -2.5 148 52-236 666-814 (881)
116 KOG4208 Nucleolar RNA-binding 99.1 1.5E-10 3.2E-15 96.6 8.1 86 47-132 43-130 (214)
117 KOG0415 Predicted peptidyl pro 99.1 9.5E-11 2E-15 104.7 6.4 84 48-131 234-318 (479)
118 KOG0132 RNA polymerase II C-te 99.1 1.5E-09 3.3E-14 106.0 14.7 78 159-241 422-499 (894)
119 KOG4208 Nucleolar RNA-binding 99.1 3.3E-10 7.1E-15 94.6 7.3 82 156-237 47-130 (214)
120 KOG4205 RNA-binding protein mu 99.1 2E-10 4.3E-15 104.4 6.2 116 12-128 44-172 (311)
121 KOG0153 Predicted RNA-binding 99.1 4.6E-10 1E-14 100.3 7.9 77 155-236 225-302 (377)
122 KOG4660 Protein Mei2, essentia 99.0 3.8E-10 8.3E-15 106.8 6.4 182 44-236 66-249 (549)
123 KOG0112 Large RNA-binding prot 99.0 3.7E-10 8.1E-15 111.9 4.3 165 47-238 366-532 (975)
124 KOG1365 RNA-binding protein Fu 99.0 3.7E-09 8.1E-14 95.6 10.0 180 50-235 57-241 (508)
125 KOG0153 Predicted RNA-binding 98.9 3.3E-09 7.1E-14 95.0 8.4 82 45-131 220-302 (377)
126 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.2E-09 6.9E-14 100.4 8.6 85 47-131 399-484 (940)
127 KOG0226 RNA-binding proteins [ 98.9 1.3E-09 2.8E-14 93.6 5.5 122 5-126 129-264 (290)
128 KOG0533 RRM motif-containing p 98.9 8.4E-09 1.8E-13 90.3 8.1 82 158-239 83-164 (243)
129 KOG0533 RRM motif-containing p 98.8 1.1E-08 2.4E-13 89.6 8.2 83 49-131 79-161 (243)
130 KOG4661 Hsp27-ERE-TATA-binding 98.8 8E-09 1.7E-13 97.7 7.5 79 159-237 406-485 (940)
131 KOG1548 Transcription elongati 98.7 4.6E-08 1E-12 87.7 8.3 79 157-235 133-219 (382)
132 PF04059 RRM_2: RNA recognitio 98.7 1.7E-07 3.7E-12 70.5 9.2 79 159-237 2-87 (97)
133 KOG4849 mRNA cleavage factor I 98.7 2.4E-07 5.1E-12 83.1 11.6 79 156-234 78-159 (498)
134 KOG1457 RNA binding protein (c 98.6 1.7E-07 3.7E-12 79.2 8.6 84 158-241 34-122 (284)
135 KOG4454 RNA binding protein (R 98.6 1.4E-08 3E-13 85.5 1.9 78 159-237 10-87 (267)
136 KOG4307 RNA binding protein RB 98.6 7.9E-08 1.7E-12 93.1 7.0 183 51-235 309-512 (944)
137 smart00517 PolyA C-terminal do 98.6 1.1E-08 2.4E-13 69.9 0.9 26 328-353 1-26 (64)
138 PF04059 RRM_2: RNA recognitio 98.6 2.9E-07 6.2E-12 69.3 8.4 67 54-120 2-71 (97)
139 KOG0116 RasGAP SH3 binding pro 98.6 8.9E-08 1.9E-12 90.6 6.7 75 53-128 288-363 (419)
140 KOG2193 IGF-II mRNA-binding pr 98.6 5.9E-09 1.3E-13 95.4 -1.4 154 54-236 2-156 (584)
141 KOG4209 Splicing factor RNPS1, 98.6 1E-07 2.2E-12 83.8 5.7 79 158-237 101-180 (231)
142 KOG4209 Splicing factor RNPS1, 98.5 1E-07 2.2E-12 83.7 5.1 83 48-131 96-179 (231)
143 KOG0116 RasGAP SH3 binding pro 98.5 1.9E-07 4.1E-12 88.4 7.1 79 159-238 289-368 (419)
144 PF11608 Limkain-b1: Limkain b 98.5 3.9E-07 8.4E-12 65.3 6.8 71 54-133 3-78 (90)
145 PF00658 PABP: Poly-adenylate 98.5 1.4E-08 3.1E-13 71.9 -0.8 34 319-352 3-36 (72)
146 KOG4660 Protein Mei2, essentia 98.4 1.3E-07 2.8E-12 89.9 3.5 71 156-230 73-143 (549)
147 KOG0151 Predicted splicing reg 98.4 3.5E-07 7.7E-12 89.0 5.9 81 51-131 172-256 (877)
148 KOG0106 Alternative splicing f 98.4 2.6E-07 5.7E-12 79.3 4.3 73 159-238 2-74 (216)
149 PF11608 Limkain-b1: Limkain b 98.4 1.5E-06 3.2E-11 62.4 7.3 71 159-238 3-78 (90)
150 KOG0151 Predicted splicing reg 98.4 6.9E-07 1.5E-11 87.0 6.5 81 157-237 173-257 (877)
151 KOG4676 Splicing factor, argin 98.4 2.8E-07 6E-12 83.9 3.5 169 53-226 7-215 (479)
152 PF08777 RRM_3: RNA binding mo 98.2 6E-06 1.3E-10 63.6 6.5 78 159-241 2-84 (105)
153 KOG1995 Conserved Zn-finger pr 98.0 3.6E-06 7.7E-11 76.4 3.7 81 159-239 67-156 (351)
154 KOG3152 TBP-binding protein, a 98.0 7.4E-06 1.6E-10 70.9 3.9 73 52-124 73-158 (278)
155 COG5175 MOT2 Transcriptional r 97.9 3.3E-05 7.1E-10 69.4 6.5 79 159-237 115-203 (480)
156 PF08777 RRM_3: RNA binding mo 97.8 6.9E-05 1.5E-09 57.7 6.4 59 54-117 2-60 (105)
157 KOG0128 RNA-binding protein SA 97.7 1.4E-06 3.1E-11 86.7 -4.8 168 53-231 571-741 (881)
158 KOG0115 RNA-binding protein p5 97.7 8.7E-05 1.9E-09 64.4 6.2 89 106-221 6-94 (275)
159 KOG4849 mRNA cleavage factor I 97.6 3.9E-05 8.5E-10 69.1 3.5 78 49-126 76-156 (498)
160 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00017 3.6E-09 48.1 5.3 52 54-111 2-53 (53)
161 KOG2314 Translation initiation 97.6 0.0002 4.4E-09 68.6 7.5 81 50-130 55-142 (698)
162 KOG1995 Conserved Zn-finger pr 97.5 9.8E-05 2.1E-09 67.2 4.7 82 50-131 63-153 (351)
163 KOG4210 Nuclear localization s 97.5 6.1E-05 1.3E-09 68.6 2.9 120 10-130 124-262 (285)
164 KOG2314 Translation initiation 97.5 0.00041 8.9E-09 66.5 8.4 78 157-234 57-141 (698)
165 KOG1996 mRNA splicing factor [ 97.5 0.00039 8.4E-09 61.5 7.1 73 172-244 300-374 (378)
166 KOG3152 TBP-binding protein, a 97.4 8.9E-05 1.9E-09 64.4 2.8 70 159-228 75-157 (278)
167 KOG2202 U2 snRNP splicing fact 97.4 6.9E-05 1.5E-09 65.2 1.6 68 173-240 83-151 (260)
168 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.00057 1.2E-08 51.9 5.7 77 52-130 5-90 (100)
169 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00067 1.5E-08 45.2 5.3 52 159-216 2-53 (53)
170 KOG2202 U2 snRNP splicing fact 97.3 0.00011 2.4E-09 63.9 1.7 64 68-131 83-147 (260)
171 COG5175 MOT2 Transcriptional r 97.3 0.00065 1.4E-08 61.2 6.2 77 52-128 113-199 (480)
172 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0025 5.4E-08 48.4 8.1 75 159-235 7-90 (100)
173 KOG1855 Predicted RNA-binding 97.2 0.00037 8.1E-09 64.7 4.2 70 48-117 226-309 (484)
174 PF08952 DUF1866: Domain of un 97.1 0.0025 5.4E-08 51.3 7.4 58 174-239 52-109 (146)
175 KOG1855 Predicted RNA-binding 97.1 0.00054 1.2E-08 63.7 3.8 70 153-222 226-309 (484)
176 KOG0129 Predicted RNA-binding 97.0 0.0018 4E-08 61.7 7.1 67 47-113 364-432 (520)
177 KOG1924 RhoA GTPase effector D 96.9 0.0024 5.2E-08 63.7 7.0 11 286-296 576-586 (1102)
178 KOG0112 Large RNA-binding prot 96.9 0.00045 9.7E-09 69.7 1.8 78 159-236 373-450 (975)
179 PF10309 DUF2414: Protein of u 96.8 0.0067 1.5E-07 41.5 6.8 54 159-219 6-62 (62)
180 KOG2416 Acinus (induces apopto 96.8 0.0009 2E-08 64.7 3.4 82 155-241 441-526 (718)
181 KOG2193 IGF-II mRNA-binding pr 96.7 0.002 4.3E-08 59.9 4.7 82 159-245 2-84 (584)
182 KOG0115 RNA-binding protein p5 96.5 0.0037 8.1E-08 54.5 4.8 82 33-115 12-93 (275)
183 KOG2591 c-Mpl binding protein, 96.5 0.02 4.3E-07 55.3 10.0 69 159-233 176-248 (684)
184 KOG1996 mRNA splicing factor [ 96.5 0.0072 1.6E-07 53.7 6.3 62 67-128 300-363 (378)
185 PF08952 DUF1866: Domain of un 96.3 0.012 2.6E-07 47.5 5.9 77 49-133 23-108 (146)
186 PF10309 DUF2414: Protein of u 96.2 0.031 6.7E-07 38.3 6.7 53 54-114 6-62 (62)
187 PF08675 RNA_bind: RNA binding 96.2 0.026 5.7E-07 40.8 6.5 55 53-115 9-63 (87)
188 KOG2416 Acinus (induces apopto 96.1 0.005 1.1E-07 59.7 3.6 78 49-131 440-521 (718)
189 KOG2068 MOT2 transcription fac 95.7 0.0036 7.7E-08 56.9 0.8 80 159-238 78-164 (327)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.0091 2E-07 50.5 2.9 69 52-120 6-81 (176)
191 PF10567 Nab6_mRNP_bdg: RNA-re 95.6 0.62 1.3E-05 41.9 14.2 190 48-237 10-232 (309)
192 PF04847 Calcipressin: Calcipr 95.4 0.035 7.5E-07 47.2 5.5 63 171-238 8-72 (184)
193 PF07576 BRAP2: BRCA1-associat 95.4 0.18 4E-06 39.0 9.0 67 54-121 14-81 (110)
194 KOG4676 Splicing factor, argin 95.3 0.094 2E-06 48.7 8.4 75 159-234 8-86 (479)
195 PF08675 RNA_bind: RNA binding 95.2 0.12 2.5E-06 37.5 6.9 54 159-220 10-63 (87)
196 PF15023 DUF4523: Protein of u 95.2 0.058 1.3E-06 43.1 5.9 75 155-236 83-161 (166)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.082 1.8E-06 44.7 6.7 78 159-236 8-97 (176)
198 KOG1924 RhoA GTPase effector D 94.9 0.074 1.6E-06 53.6 6.9 7 291-297 569-575 (1102)
199 PF07576 BRAP2: BRCA1-associat 94.8 0.35 7.6E-06 37.4 9.0 67 159-226 14-81 (110)
200 KOG4285 Mitotic phosphoprotein 94.8 0.15 3.2E-06 45.8 7.7 69 53-128 197-266 (350)
201 PF15023 DUF4523: Protein of u 94.7 0.19 4.2E-06 40.2 7.6 76 48-130 81-160 (166)
202 KOG2253 U1 snRNP complex, subu 94.2 0.0036 7.7E-08 61.5 -3.7 72 48-127 35-106 (668)
203 KOG2135 Proteins containing th 94.0 0.032 7E-07 52.9 2.2 72 161-238 375-447 (526)
204 KOG2591 c-Mpl binding protein, 93.8 0.22 4.7E-06 48.4 7.3 72 48-125 170-245 (684)
205 KOG4285 Mitotic phosphoprotein 93.7 0.14 3E-06 46.0 5.3 71 163-240 202-273 (350)
206 KOG4574 RNA-binding protein (c 93.3 0.052 1.1E-06 55.0 2.4 75 159-238 299-375 (1007)
207 PF03880 DbpA: DbpA RNA bindin 93.1 0.45 9.8E-06 33.9 6.4 59 168-234 11-74 (74)
208 PF11767 SET_assoc: Histone ly 92.9 0.56 1.2E-05 32.6 6.4 56 168-231 10-65 (66)
209 KOG2318 Uncharacterized conser 92.8 0.32 6.9E-06 47.6 6.7 84 49-132 170-308 (650)
210 PF11767 SET_assoc: Histone ly 92.7 0.52 1.1E-05 32.8 6.0 54 64-125 11-64 (66)
211 KOG2068 MOT2 transcription fac 92.3 0.063 1.4E-06 49.0 1.3 73 53-125 77-156 (327)
212 KOG0804 Cytoplasmic Zn-finger 92.2 0.62 1.3E-05 44.3 7.6 69 52-121 73-142 (493)
213 KOG2135 Proteins containing th 92.0 0.076 1.6E-06 50.5 1.5 78 48-131 367-445 (526)
214 PF04847 Calcipressin: Calcipr 92.0 0.32 6.9E-06 41.4 5.1 60 66-130 8-69 (184)
215 KOG2253 U1 snRNP complex, subu 91.0 0.14 3.1E-06 50.7 2.3 71 156-234 38-108 (668)
216 KOG0804 Cytoplasmic Zn-finger 90.9 0.9 2E-05 43.2 7.3 68 158-226 74-142 (493)
217 PF07292 NID: Nmi/IFP 35 domai 90.6 0.33 7.2E-06 35.8 3.4 71 97-180 1-74 (88)
218 KOG2318 Uncharacterized conser 87.1 2.4 5.2E-05 41.7 7.4 79 156-234 172-305 (650)
219 KOG4574 RNA-binding protein (c 86.3 0.36 7.7E-06 49.3 1.4 72 54-130 299-372 (1007)
220 PF03880 DbpA: DbpA RNA bindin 82.8 5.1 0.00011 28.4 5.9 56 64-127 12-72 (74)
221 KOG4213 RNA-binding protein La 82.1 0.98 2.1E-05 37.6 2.1 76 33-113 91-169 (205)
222 KOG4019 Calcineurin-mediated s 80.8 1.6 3.6E-05 36.4 3.0 78 156-238 8-91 (193)
223 PRK14548 50S ribosomal protein 77.6 12 0.00026 27.4 6.3 58 160-219 22-81 (84)
224 TIGR03636 L23_arch archaeal ri 74.6 17 0.00036 26.1 6.4 58 160-219 15-74 (77)
225 PRK14548 50S ribosomal protein 73.1 16 0.00035 26.7 6.0 58 55-114 22-81 (84)
226 KOG4410 5-formyltetrahydrofola 72.3 11 0.00024 33.9 5.9 54 48-105 325-378 (396)
227 KOG4483 Uncharacterized conser 69.5 12 0.00025 35.4 5.7 59 154-218 387-446 (528)
228 PF14111 DUF4283: Domain of un 68.0 9.6 0.00021 30.9 4.5 110 64-193 28-140 (153)
229 COG5638 Uncharacterized conser 67.8 21 0.00046 33.8 7.0 86 46-131 139-297 (622)
230 TIGR03636 L23_arch archaeal ri 64.7 29 0.00063 24.9 5.8 58 55-114 15-74 (77)
231 KOG4483 Uncharacterized conser 64.0 19 0.0004 34.1 5.8 59 48-112 386-445 (528)
232 PF15513 DUF4651: Domain of un 63.0 18 0.00039 24.7 4.2 20 173-192 9-28 (62)
233 KOG4410 5-formyltetrahydrofola 62.4 18 0.00039 32.6 5.3 47 159-210 331-378 (396)
234 PF03468 XS: XS domain; Inter 61.9 12 0.00026 29.2 3.7 38 171-210 30-67 (116)
235 KOG2891 Surface glycoprotein [ 59.3 3.5 7.6E-05 36.8 0.4 67 53-119 149-247 (445)
236 PF10567 Nab6_mRNP_bdg: RNA-re 59.2 20 0.00044 32.5 5.1 78 158-235 15-106 (309)
237 KOG2295 C2H2 Zn-finger protein 58.6 1.7 3.6E-05 42.5 -1.9 73 51-123 229-302 (648)
238 PF03468 XS: XS domain; Inter 57.6 15 0.00032 28.7 3.6 46 65-112 29-75 (116)
239 COG5594 Uncharacterized integr 54.9 2.3 4.9E-05 43.8 -1.7 39 48-86 203-244 (827)
240 PTZ00191 60S ribosomal protein 51.5 61 0.0013 26.3 6.2 58 159-218 82-141 (145)
241 PF15513 DUF4651: Domain of un 45.3 59 0.0013 22.2 4.4 18 68-85 9-26 (62)
242 KOG3424 40S ribosomal protein 45.1 78 0.0017 24.6 5.6 47 63-110 33-85 (132)
243 PF07530 PRE_C2HC: Associated 39.8 54 0.0012 22.8 3.8 62 173-237 2-65 (68)
244 KOG4213 RNA-binding protein La 39.6 38 0.00081 28.5 3.4 73 155-233 108-183 (205)
245 PF07292 NID: Nmi/IFP 35 domai 38.6 17 0.00037 26.8 1.2 27 49-75 48-74 (88)
246 KOG2893 Zn finger protein [Gen 37.5 1.4E+02 0.003 26.3 6.6 10 200-209 49-58 (341)
247 PF02714 DUF221: Domain of unk 36.0 72 0.0016 29.5 5.2 22 97-118 1-22 (325)
248 PF02714 DUF221: Domain of unk 34.9 44 0.00095 30.9 3.6 35 202-238 1-35 (325)
249 PF03439 Spt5-NGN: Early trans 33.9 56 0.0012 23.7 3.3 36 184-223 33-68 (84)
250 PRK01178 rps24e 30S ribosomal 33.9 1.1E+02 0.0025 23.1 4.9 47 63-110 29-81 (99)
251 smart00596 PRE_C2HC PRE_C2HC d 33.4 64 0.0014 22.6 3.2 61 173-236 2-64 (69)
252 KOG2295 C2H2 Zn-finger protein 32.9 7 0.00015 38.4 -2.1 68 159-226 232-300 (648)
253 PTZ00191 60S ribosomal protein 32.5 1.6E+02 0.0035 23.9 5.9 56 55-112 83-140 (145)
254 KOG4365 Uncharacterized conser 32.1 13 0.00029 35.5 -0.3 73 54-127 4-77 (572)
255 KOG1295 Nonsense-mediated deca 31.8 35 0.00076 32.2 2.3 68 52-119 6-77 (376)
256 KOG4019 Calcineurin-mediated s 31.8 35 0.00075 28.8 2.0 72 55-131 12-89 (193)
257 PF11411 DNA_ligase_IV: DNA li 31.4 36 0.00079 20.5 1.5 17 63-79 19-35 (36)
258 KOG4365 Uncharacterized conser 30.8 10 0.00022 36.2 -1.3 78 160-238 5-83 (572)
259 PF08544 GHMP_kinases_C: GHMP 30.6 1.9E+02 0.0041 20.2 5.8 44 68-116 37-81 (85)
260 COG5193 LHP1 La protein, small 29.1 23 0.0005 33.6 0.6 63 50-112 171-244 (438)
261 KOG2891 Surface glycoprotein [ 28.8 2E+02 0.0044 25.9 6.4 169 63-237 47-268 (445)
262 cd04904 ACT_AAAH ACT domain of 28.0 2.1E+02 0.0046 19.9 6.3 49 67-116 14-65 (74)
263 PF01282 Ribosomal_S24e: Ribos 28.0 2.4E+02 0.0052 20.5 6.3 47 63-110 11-63 (84)
264 cd04908 ACT_Bt0572_1 N-termina 27.9 1.9E+02 0.0041 19.3 8.5 49 171-223 14-63 (66)
265 PTZ00071 40S ribosomal protein 26.5 1.7E+02 0.0036 23.4 4.9 46 64-110 35-87 (132)
266 PF14893 PNMA: PNMA 26.3 66 0.0014 30.1 3.1 54 51-104 16-72 (331)
267 KOG4008 rRNA processing protei 24.8 67 0.0014 28.3 2.6 36 48-83 35-70 (261)
268 PF11823 DUF3343: Protein of u 24.5 1.4E+02 0.0031 20.7 4.0 30 95-124 2-31 (73)
269 cd04880 ACT_AAAH-PDT-like ACT 23.9 2.5E+02 0.0054 19.3 6.8 51 66-116 12-66 (75)
270 PRK11901 hypothetical protein; 23.1 2.4E+02 0.0051 26.3 5.9 59 159-222 246-307 (327)
271 cd04905 ACT_CM-PDT C-terminal 22.8 2.7E+02 0.006 19.4 7.0 50 67-116 15-68 (80)
272 PF00403 HMA: Heavy-metal-asso 22.7 2.3E+02 0.005 18.5 6.6 54 160-218 1-58 (62)
273 PRK10629 EnvZ/OmpR regulon mod 22.3 4E+02 0.0087 21.1 7.5 70 159-235 36-109 (127)
274 PRK11230 glycolate oxidase sub 21.6 2.6E+02 0.0055 27.9 6.5 49 172-220 203-255 (499)
275 PRK11230 glycolate oxidase sub 21.5 2.4E+02 0.0052 28.1 6.2 50 67-116 203-256 (499)
276 PF09902 DUF2129: Uncharacteri 21.2 2.6E+02 0.0057 19.7 4.6 38 73-118 16-53 (71)
277 COG5193 LHP1 La protein, small 20.6 44 0.00096 31.7 0.8 59 159-217 175-244 (438)
278 PRK08559 nusG transcription an 20.5 2.7E+02 0.0058 22.7 5.4 34 185-222 36-69 (153)
279 PRK11901 hypothetical protein; 20.5 1.9E+02 0.0041 26.9 4.8 60 52-116 244-306 (327)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7e-50 Score=399.28 Aligned_cols=247 Identities=40% Similarity=0.648 Sum_probs=201.9
Q ss_pred eeeeeccCC-CCccceeEEEecCchhhHHHHHHhc-cccc--cccc------cccCCCCCCeEEEcCCCCCCcHHHHHHH
Q 036905 4 SLRALNNND-SAILGTPFSLYVGDLDSTDLLRLCS-ALIA--SIDV------HSAMATPTFIPFTVNLASTIDNWKLHQI 73 (354)
Q Consensus 4 ~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~------~~~~~~~~~~lfV~nLp~~~te~~L~~~ 73 (354)
+++.+.+.. ..++||+|+.|.+..+++.++.... ..+. .+.+ ........++|||+|||+++|+++|+++
T Consensus 29 ~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~ 108 (562)
T TIGR01628 29 SVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDT 108 (562)
T ss_pred EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHH
Confidence 455655544 7899999999999999999886544 3232 1111 1222234568999999999999999999
Q ss_pred HhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc--cc-cccccccccccccCCCc
Q 036905 74 FSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA--GR-IQESASFNNLYVKNLDD 150 (354)
Q Consensus 74 F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~--~~-~~~~~~~~~~~~~~~~~ 150 (354)
|+.||.|.+|+|+.+.+|+++|||||+|.+.++|++|++.|||..+.++.|.+..... ++ ......++++++++++.
T Consensus 109 F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~ 188 (562)
T TIGR01628 109 FSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDP 188 (562)
T ss_pred HHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999998543222 11 11233344555555544
Q ss_pred hhhhhcCC------------------------------------------------------------------------
Q 036905 151 DVTEEILD------------------------------------------------------------------------ 158 (354)
Q Consensus 151 ~~~~~~~~------------------------------------------------------------------------ 158 (354)
..++++..
T Consensus 189 ~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~ 268 (562)
T TIGR01628 189 SVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAEL 268 (562)
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHH
Confidence 44332211
Q ss_pred -----------------ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 036905 159 -----------------KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221 (354)
Q Consensus 159 -----------------~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g 221 (354)
.+|||+||+.++|+++|+++|+.||.|++|+++.+.+|.++|||||+|++.++|.+|+.+|||
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g 348 (562)
T TIGR01628 269 RRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHG 348 (562)
T ss_pred HhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcC
Confidence 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCCeeEEEEeccCchhhhHHHHHhhhh
Q 036905 222 ILFHQKPLYVAIAQTKRERTSYLRIMYAK 250 (354)
Q Consensus 222 ~~i~g~~l~v~~a~~~~~~~~~~~~~~~~ 250 (354)
+.|+|++|+|.+|++++.+...++.++.+
T Consensus 349 ~~~~gk~l~V~~a~~k~~~~~~~~~~~~q 377 (562)
T TIGR01628 349 RMLGGKPLYVALAQRKEQRRAHLQDQFMQ 377 (562)
T ss_pred CeeCCceeEEEeccCcHHHHHHHHHHHHH
Confidence 99999999999999999999888877766
No 2
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-36 Score=259.35 Aligned_cols=181 Identities=27% Similarity=0.448 Sum_probs=156.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
......+||+.|...|+.++|++.|.+||+|.+++|++|. |++|||||||.|.+.++|+.||..|||.+|++|.|+..|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 3346789999999999999999999999999999999999 999999999999999999999999999999999999777
Q ss_pred ccccccc---cccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q 036905 129 LRAGRIQ---ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVC 205 (354)
Q Consensus 129 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~ 205 (354)
..++... ....+..++-... ...+++||+|++..+||++|++.|+.||.|.+|+|.++ +||+||.
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQss-------p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVr 206 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSS-------PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVR 206 (321)
T ss_pred cccCccccCCCCccHHHHhccCC-------CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEE
Confidence 7663311 1112222211111 12289999999999999999999999999999999998 8999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeeEEEEeccCchhhhH
Q 036905 206 FSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242 (354)
Q Consensus 206 f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~~ 242 (354)
|++.|+|.+||..|||..|+|..+++.|.+.......
T Consensus 207 F~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 207 FETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred ecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 9999999999999999999999999999987765543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.5e-35 Score=276.14 Aligned_cols=236 Identities=27% Similarity=0.373 Sum_probs=182.6
Q ss_pred eeeeecc-CCCCccceeEEEecCchhhHHHHH-Hhcccccc--cc----ccccCCCCCCeEEEcCCCCCCcHHHHHHHHh
Q 036905 4 SLRALNN-NDSAILGTPFSLYVGDLDSTDLLR-LCSALIAS--ID----VHSAMATPTFIPFTVNLASTIDNWKLHQIFS 75 (354)
Q Consensus 4 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~--~~----~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~ 75 (354)
.++++.+ ..+.++||+|+.|....+++.++. ++...+.. +. .........++|||+|||.++++++|+++|+
T Consensus 32 ~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 111 (352)
T TIGR01661 32 SCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFS 111 (352)
T ss_pred EEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHHHh
Confidence 3455554 457899999999999999998876 44444432 21 1223334567999999999999999999999
Q ss_pred hcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCC--eEEEecccccccccccccccc-------ccc
Q 036905 76 KFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEG--MELYAPSLRAGRIQESASFNN-------LYV 145 (354)
Q Consensus 76 ~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g--~~i~~~~~~~~~~~~~~~~~~-------~~~ 145 (354)
.||.|..++++.+. ++.++|||||+|.+.++|++|++.|||..+.| +.|.+.+.............. ...
T Consensus 112 ~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 191 (352)
T TIGR01661 112 PFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQT 191 (352)
T ss_pred ccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCccc
Confidence 99999999999988 88999999999999999999999999999877 455566543211000000000 000
Q ss_pred --------------------------------------------------cCC-C---ch-----------hhhhcCCce
Q 036905 146 --------------------------------------------------KNL-D---DD-----------VTEEILDKN 160 (354)
Q Consensus 146 --------------------------------------------------~~~-~---~~-----------~~~~~~~~~ 160 (354)
... + .. ........+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (352)
T TIGR01661 192 TRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYC 271 (352)
T ss_pred CCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcE
Confidence 000 0 00 000111236
Q ss_pred EEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchh
Q 036905 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 161 l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~ 239 (354)
|||+|||.++++++|+++|++||.|.+|+|+++. +|.+||||||+|.+.++|.+|+..|||..|+||.|+|.|+..+..
T Consensus 272 lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 272 IFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999999988764
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=6.9e-35 Score=270.72 Aligned_cols=173 Identities=27% Similarity=0.455 Sum_probs=155.8
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
......++|||+|||+++|+++|+++|+.||.|++|+|+.|. +++++|||||+|.++++|++||+.||+..+.++.|.+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 344567899999999999999999999999999999999998 9999999999999999999999999999999999998
Q ss_pred ccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q 036905 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVC 205 (354)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~ 205 (354)
.+.+.... ....++|||+|||..+|+++|+++|++||.|+.|+|+++. +|+++|||||+
T Consensus 182 ~~a~p~~~--------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~ 241 (346)
T TIGR01659 182 SYARPGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVR 241 (346)
T ss_pred eccccccc--------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEE
Confidence 77543210 1123689999999999999999999999999999999988 89999999999
Q ss_pred eCCHHHHHHHHHHhCCceeCC--eeEEEEeccCchhh
Q 036905 206 FSNPDEANRAINTLNGILFHQ--KPLYVAIAQTKRER 240 (354)
Q Consensus 206 f~~~~~A~~Ai~~l~g~~i~g--~~l~v~~a~~~~~~ 240 (354)
|++.++|++||+.||+..+.+ ++|+|.+++.....
T Consensus 242 F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 242 FNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred ECCHHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 999999999999999998876 79999999876544
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=239.74 Aligned_cols=228 Identities=30% Similarity=0.390 Sum_probs=186.6
Q ss_pred cCCCCccceeEEEecCchhhHHH------HHHhccccc-cccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeE
Q 036905 10 NNDSAILGTPFSLYVGDLDSTDL------LRLCSALIA-SIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQS 82 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~ 82 (354)
.-.+.++||||+.|+.+.|++++ +++..++|+ +...++.+.....+|||.+||+.+|..+|.++|++||.|..
T Consensus 77 KitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIIt 156 (360)
T KOG0145|consen 77 KITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIIT 156 (360)
T ss_pred cccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhh
Confidence 34678999999999999999965 566667887 88888999999999999999999999999999999999999
Q ss_pred EEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCe--EEEeccccccccc-cccccc-------ccccc-----
Q 036905 83 SKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM--ELYAPSLRAGRIQ-ESASFN-------NLYVK----- 146 (354)
Q Consensus 83 v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~--~i~~~~~~~~~~~-~~~~~~-------~~~~~----- 146 (354)
-+|+.|. +|.+||.|||.|...++|+.||+.|||..-.|. .|.++|....... ...... ..+..
T Consensus 157 SRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~ 236 (360)
T KOG0145|consen 157 SRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQ 236 (360)
T ss_pred hhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccch
Confidence 9999999 999999999999999999999999999886553 4556665442100 000000 00000
Q ss_pred -------CCCch---------h--------------hhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-C
Q 036905 147 -------NLDDD---------V--------------TEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-R 195 (354)
Q Consensus 147 -------~~~~~---------~--------------~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~ 195 (354)
++... . .......+|||-||..+++|.-|.++|.+||.|..|+|++|. +
T Consensus 237 ~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~tt 316 (360)
T KOG0145|consen 237 AQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTT 316 (360)
T ss_pred hhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCc
Confidence 00000 0 000111899999999999999999999999999999999998 6
Q ss_pred CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 196 GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 196 g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.+-||||||.+.+.++|..||..|||..+++|.|.|+|...|
T Consensus 317 nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 317 NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 889999999999999999999999999999999999998765
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=6.9e-33 Score=270.14 Aligned_cols=180 Identities=21% Similarity=0.321 Sum_probs=154.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
...++|||+|||+++++++|+++|+.||.|.+|+++.|+ +|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456799999999999999999999999999999999998 9999999999999999999999999999999999997643
Q ss_pred cccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCC
Q 036905 130 RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSN 208 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~ 208 (354)
....... . ... .........++|||+||+.++++++|+++|+.||.|.+|+|.++. +|.+||||||+|++
T Consensus 185 ~~~p~a~--~----~~~---~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 185 SNMPQAQ--P----IID---MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred ccccccc--c----ccc---cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 2210000 0 000 000111223789999999999999999999999999999999997 78899999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeccCchh
Q 036905 209 PDEANRAINTLNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 209 ~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~ 239 (354)
.++|.+|++.|||..|+|+.|+|.++..+..
T Consensus 256 ~e~A~kAI~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HHHHHHHHHHhCCCeeCCeEEEEEecCCCcc
Confidence 9999999999999999999999999986543
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=8.9e-32 Score=254.22 Aligned_cols=168 Identities=32% Similarity=0.511 Sum_probs=152.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
+..+|||+|||.++|+++|+++|+.||+|.+|+|++|+ +|+++|||||+|.+.++|++||+.|||..+.|+.|.+.+..
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999998 89999999999999999999999999999999999987754
Q ss_pred ccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCH
Q 036905 131 AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNP 209 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~ 209 (354)
.... .....+|||+|||..+++++|+++|+.||.|..++++.+. ++.++|||||+|++.
T Consensus 82 ~~~~--------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~ 141 (352)
T TIGR01661 82 PSSD--------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKR 141 (352)
T ss_pred cccc--------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 3110 1112689999999999999999999999999999999887 788999999999999
Q ss_pred HHHHHHHHHhCCceeCC--eeEEEEeccCchh
Q 036905 210 DEANRAINTLNGILFHQ--KPLYVAIAQTKRE 239 (354)
Q Consensus 210 ~~A~~Ai~~l~g~~i~g--~~l~v~~a~~~~~ 239 (354)
++|.+|++.|||..+.| ++|.|.|+..+..
T Consensus 142 ~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 142 DEADRAIKTLNGTTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCCCCc
Confidence 99999999999999877 6899999976653
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7.5e-32 Score=269.53 Aligned_cols=187 Identities=31% Similarity=0.516 Sum_probs=164.8
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccccc
Q 036905 55 IPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133 (354)
Q Consensus 55 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~ 133 (354)
+|||+|||.++||++|+++|+.||.|.+|+|++|. +++++|||||+|.+.++|++|++.||+..+.|+.|++.|..++.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999 89999999999999999999999999999999999988876544
Q ss_pred cccccccccccccCCCchhhhhcCC-------------------------------------------------------
Q 036905 134 IQESASFNNLYVKNLDDDVTEEILD------------------------------------------------------- 158 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 158 (354)
........++++++++...+++.+.
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 3333334456666655543332211
Q ss_pred -----------------ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 036905 159 -----------------KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221 (354)
Q Consensus 159 -----------------~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g 221 (354)
++|||+||+.++|+++|+++|+.||.|.++.++++.+|.++|||||+|++.++|.+|++.|||
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeC----CeeEEEEeccCchhhh
Q 036905 222 ILFH----QKPLYVAIAQTKRERT 241 (354)
Q Consensus 222 ~~i~----g~~l~v~~a~~~~~~~ 241 (354)
..|. |+.|.|.+++.+..+.
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~ 265 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAERE 265 (562)
T ss_pred cEecccccceeeEeecccChhhhH
Confidence 9999 9999999998877663
No 9
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-32 Score=253.59 Aligned_cols=244 Identities=39% Similarity=0.632 Sum_probs=199.2
Q ss_pred eeeeeeccCCCCccceeEEEecCchhhHHHHHHhccc-cc--cccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCC
Q 036905 3 VSLRALNNNDSAILGTPFSLYVGDLDSTDLLRLCSAL-IA--SIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGD 79 (354)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 79 (354)
+++|.-.+. + ++||+++.|..+.|++.++...+.. +. .+.+--...+++. |||+||++++|.++|+++|+.||+
T Consensus 26 ~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~-~~i~nl~~~~~~~~~~d~f~~~g~ 102 (369)
T KOG0123|consen 26 LSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL-VFIKNLDESIDNKSLYDTFSEFGN 102 (369)
T ss_pred eeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce-eeecCCCcccCcHHHHHHHHhhcC
Confidence 467777777 5 9999999999999999887776633 22 3333333333333 999999999999999999999999
Q ss_pred eeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe-ccccc-cccc----cccccccccccCCCchhh
Q 036905 80 IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA-PSLRA-GRIQ----ESASFNNLYVKNLDDDVT 153 (354)
Q Consensus 80 i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~-~~~~~-~~~~----~~~~~~~~~~~~~~~~~~ 153 (354)
|++|++.+|.+| ++|| ||+|+++++|++|++.+||..+.+++|++ .+.++ ++.. ....++++++++.....+
T Consensus 103 ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~ 180 (369)
T KOG0123|consen 103 ILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDST 180 (369)
T ss_pred eeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccc
Confidence 999999999988 9999 99999999999999999999999999994 44333 2211 233345555555442222
Q ss_pred hhcCC---------------------------------------------------------------------------
Q 036905 154 EEILD--------------------------------------------------------------------------- 158 (354)
Q Consensus 154 ~~~~~--------------------------------------------------------------------------- 158 (354)
+....
T Consensus 181 ~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~ 260 (369)
T KOG0123|consen 181 DEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQE 260 (369)
T ss_pred hHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhh
Confidence 21111
Q ss_pred ----------ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 036905 159 ----------KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228 (354)
Q Consensus 159 ----------~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 228 (354)
.+|||+|++..++++.|++.|+.||+|++++|+.+..|.++||+||+|++.++|.+|+..+|+..+.+++
T Consensus 261 ~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~ 340 (369)
T KOG0123|consen 261 FAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKP 340 (369)
T ss_pred hhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCchhhhHHHHHhhhhC
Q 036905 229 LYVAIAQTKRERTSYLRIMYAKQ 251 (354)
Q Consensus 229 l~v~~a~~~~~~~~~~~~~~~~~ 251 (354)
++|.+++++..++...+..+...
T Consensus 341 l~vav~qr~~~r~~~~~~~~~~~ 363 (369)
T KOG0123|consen 341 LYVAVAQRKEDRRARLQAVFGAR 363 (369)
T ss_pred hhhhHHhhhccchhhhhhhccee
Confidence 99999998888887776665443
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.3e-31 Score=239.60 Aligned_cols=217 Identities=20% Similarity=0.311 Sum_probs=181.9
Q ss_pred eeeecc-CCCCccceeEEEecCchhhHHHHHHhc-cccc-cccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCC-e
Q 036905 5 LRALNN-NDSAILGTPFSLYVGDLDSTDLLRLCS-ALIA-SIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGD-I 80 (354)
Q Consensus 5 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i 80 (354)
+|+|-. -.+.++||+|+.|-+-.++..+++..+ ..|+ ...+..+.+...++|||+|+|++.++++|.+.|++.++ |
T Consensus 113 lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGV 192 (506)
T KOG0117|consen 113 LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGV 192 (506)
T ss_pred EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCe
Confidence 688887 889999999999999888887766655 5666 33344566777899999999999999999999999987 8
Q ss_pred eEEEEEeCC--CCCceeEEEEEeecHHHHHHHHHHhhh--CccCCeEEEeccccccccccccccccccccCCCchhhhhc
Q 036905 81 QSSKVVVSQ--DGKSKGYGFVQYSTQESALNAIEKLYA--ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI 156 (354)
Q Consensus 81 ~~v~v~~d~--~g~skg~aFV~F~~~e~A~~Ai~~lng--~~i~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (354)
++|-|..++ ..++||||||+|++...|..|-++|-. ..+.|..+.|.|...........-..+
T Consensus 193 vdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~V------------- 259 (506)
T KOG0117|consen 193 VDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKV------------- 259 (506)
T ss_pred eEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhhe-------------
Confidence 888888877 478899999999999999999988743 347788888888765332211111111
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
+.|||+||+.++|+|.|+++|++||.|+.|+.++| ||||+|.+.++|.+|++.|||+.|+|..|.|.+|++
T Consensus 260 --KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 260 --KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred --eeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 68999999999999999999999999999999876 999999999999999999999999999999999998
Q ss_pred chhhhHH
Q 036905 237 KRERTSY 243 (354)
Q Consensus 237 ~~~~~~~ 243 (354)
..+++..
T Consensus 331 ~~k~k~~ 337 (506)
T KOG0117|consen 331 VDKKKKE 337 (506)
T ss_pred hhhhccc
Confidence 8766544
No 11
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=5.3e-32 Score=244.38 Aligned_cols=178 Identities=28% Similarity=0.454 Sum_probs=153.4
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCc-cCCe--E
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAAT-VEGM--E 123 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~-i~g~--~ 123 (354)
....+.-++||+-+|..++|+||+++|++||.|.+|.|++|+ ++.++|||||.|.+.++|.+|+..|++.. +.|. .
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 334556799999999999999999999999999999999999 99999999999999999999999998765 4443 2
Q ss_pred EEeccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEE
Q 036905 124 LYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGF 203 (354)
Q Consensus 124 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~af 203 (354)
|.+++...++ ......++|||+-|+..+||.+++++|++||.|++|.|++|..|.+|||||
T Consensus 109 vqvk~Ad~E~-------------------er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaF 169 (510)
T KOG0144|consen 109 VQVKYADGER-------------------ERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAF 169 (510)
T ss_pred eeecccchhh-------------------hccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeE
Confidence 3344443322 111223789999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHhCCc-eeCC--eeEEEEeccCchhhhHHH
Q 036905 204 VCFSNPDEANRAINTLNGI-LFHQ--KPLYVAIAQTKRERTSYL 244 (354)
Q Consensus 204 V~f~~~~~A~~Ai~~l~g~-~i~g--~~l~v~~a~~~~~~~~~~ 244 (354)
|+|++.|.|..||+.|||. ++.| .+|.|+||++++++..+.
T Consensus 170 V~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 170 VKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred EEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 9999999999999999996 5666 699999999988776543
No 12
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2.7e-30 Score=252.42 Aligned_cols=179 Identities=27% Similarity=0.435 Sum_probs=153.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
....++|||+|||.++++++|+++|+.||.|.+|+++.|. +|+++|||||+|.+.++|.+||. |+|..+.|+.|.+.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999998 89999999999999999999996 899999999999776
Q ss_pred ccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeC
Q 036905 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFS 207 (354)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~ 207 (354)
...+........... .. ......+|||+||+..+|+++|+++|+.||.|..|.++.+. +|.++|||||+|.
T Consensus 165 ~~~~~~~~~~~~~~~-----~~---~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~ 236 (457)
T TIGR01622 165 SQAEKNRAAKAATHQ-----PG---DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFH 236 (457)
T ss_pred cchhhhhhhhccccc-----CC---CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEEC
Confidence 544221111000000 00 01114899999999999999999999999999999999988 6799999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 208 NPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 208 ~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
+.++|.+|+..|||..|.|++|+|.|+...
T Consensus 237 ~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 237 DAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred CHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999999999998744
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=6.9e-30 Score=248.90 Aligned_cols=214 Identities=21% Similarity=0.300 Sum_probs=172.1
Q ss_pred eeeeeccCCCCccceeEEEecCchhhHHHHHHhc-cccc-cccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCC-e
Q 036905 4 SLRALNNNDSAILGTPFSLYVGDLDSTDLLRLCS-ALIA-SIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGD-I 80 (354)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i 80 (354)
.+++|.+..+.++|++|+.|.+.++++.+++... ..+. ...+....+...++|||+|||+++|+++|++.|++++. +
T Consensus 87 ~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egv 166 (578)
T TIGR01648 87 ELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGV 166 (578)
T ss_pred EEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhhHHHHHHhhcccCCc
Confidence 4677777888999999999999999998887654 4443 22233344556789999999999999999999999875 4
Q ss_pred eEEEEEeCC--CCCceeEEEEEeecHHHHHHHHHHhhh--CccCCeEEEeccccccccccccccccccccCCCchhhhhc
Q 036905 81 QSSKVVVSQ--DGKSKGYGFVQYSTQESALNAIEKLYA--ATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEI 156 (354)
Q Consensus 81 ~~v~v~~d~--~g~skg~aFV~F~~~e~A~~Ai~~lng--~~i~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (354)
+++.+.... .++++|||||+|++.++|.+|++.|+. ..+.|+.|.+.|...+..... ....
T Consensus 167 v~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~---------------~~~~ 231 (578)
T TIGR01648 167 VDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE---------------DVMA 231 (578)
T ss_pred eEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc---------------cccc
Confidence 444443332 578899999999999999999998864 357899999887654321110 0011
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcC--CCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQC--GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~--G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
..++|||+||+.++|+++|+++|+.| |.|++|++++ +||||+|++.++|.+|++.|||..|.|+.|+|.|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 23689999999999999999999999 9999998764 59999999999999999999999999999999999
Q ss_pred cCchh
Q 036905 235 QTKRE 239 (354)
Q Consensus 235 ~~~~~ 239 (354)
+++..
T Consensus 305 kp~~~ 309 (578)
T TIGR01648 305 KPVDK 309 (578)
T ss_pred cCCCc
Confidence 87654
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.97 E-value=4e-29 Score=247.37 Aligned_cols=226 Identities=19% Similarity=0.234 Sum_probs=171.8
Q ss_pred CCccceeEEEecCchhhHHHHHHhcccccccccc-----------------------------------ccCCCCCCeEE
Q 036905 13 SAILGTPFSLYVGDLDSTDLLRLCSALIASIDVH-----------------------------------SAMATPTFIPF 57 (354)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~lf 57 (354)
....||+|+.|....+++.++.++...+....+. .......++||
T Consensus 220 ~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 299 (509)
T TIGR01642 220 NKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIY 299 (509)
T ss_pred CCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEE
Confidence 4567999999999999999887655433211100 00123457999
Q ss_pred EcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccccccccc
Q 036905 58 TVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQE 136 (354)
Q Consensus 58 V~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~~~~ 136 (354)
|+|||..+|+++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|..||+.|||..|.|+.|.+.+........
T Consensus 300 v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~ 379 (509)
T TIGR01642 300 IGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQA 379 (509)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCC
Confidence 99999999999999999999999999999998 89999999999999999999999999999999999977765422111
Q ss_pred cccccc--c----cccCCCchh--hhhcCCceEEEeCCCCc--c--------CHHHHHHHhhcCCCeeEEEEeeCC----
Q 036905 137 SASFNN--L----YVKNLDDDV--TEEILDKNLYVKNINDD--V--------DEIELKQYFSQCGIISSVKIMRTN---- 194 (354)
Q Consensus 137 ~~~~~~--~----~~~~~~~~~--~~~~~~~~l~v~nl~~~--~--------t~~~L~~~F~~~G~v~~v~i~~~~---- 194 (354)
...... . ....+.... .......+|+|.|+... + ..++|+++|+.||.|.+|+|+++.
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~ 459 (509)
T TIGR01642 380 TIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRN 459 (509)
T ss_pred CccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCC
Confidence 000000 0 000110000 01223478999999532 1 236899999999999999998763
Q ss_pred CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 195 RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 195 ~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
.+..+|++||+|++.++|.+|+..|||..|+|+.|.|.|.....
T Consensus 460 ~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 460 STPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGEDC 503 (509)
T ss_pred cCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHHH
Confidence 34567999999999999999999999999999999999987543
No 15
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.4e-29 Score=213.58 Aligned_cols=172 Identities=30% Similarity=0.467 Sum_probs=155.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
.+..++|.|.=||.++|+++|+.+|...|+|++||+++|+ +|.|.|||||.|-+++||++||..|||.++..+.|++.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 4556789999999999999999999999999999999999 999999999999999999999999999999999999988
Q ss_pred ccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeC
Q 036905 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFS 207 (354)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~ 207 (354)
.+.... .....+|||.+||..+|..+|.++|++||.|..-+|..|. +|.+||.|||+|+
T Consensus 118 ARPSs~--------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFD 177 (360)
T KOG0145|consen 118 ARPSSD--------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFD 177 (360)
T ss_pred ccCChh--------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEec
Confidence 765221 1122689999999999999999999999999999999888 9999999999999
Q ss_pred CHHHHHHHHHHhCCceeCC--eeEEEEeccCchhhh
Q 036905 208 NPDEANRAINTLNGILFHQ--KPLYVAIAQTKRERT 241 (354)
Q Consensus 208 ~~~~A~~Ai~~l~g~~i~g--~~l~v~~a~~~~~~~ 241 (354)
..++|++||..|||..=.| .+|.|+||.......
T Consensus 178 Kr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 178 KRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred chhHHHHHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence 9999999999999987655 699999998875543
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.96 E-value=4.6e-29 Score=201.60 Aligned_cols=171 Identities=28% Similarity=0.441 Sum_probs=152.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
....+|||+||+..++++-|+++|-+.|.|+++++.+|+ +...+|||||+|.++|+|+-||+-||...+.|+.|++.-.
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 446799999999999999999999999999999999999 8999999999999999999999999999999999997654
Q ss_pred cccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEE-EEeeCC-CCCeeeEEEEEeC
Q 036905 130 RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSV-KIMRTN-RGISKGFGFVCFS 207 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v-~i~~~~-~g~~kg~afV~f~ 207 (354)
..... ......+|||+||...+++..|.+.|+.||.+.+. +|+++. +|.++|||||.|.
T Consensus 87 s~~~~-------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 87 SAHQK-------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred ccccc-------------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEech
Confidence 42110 11122789999999999999999999999988764 889988 7999999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeccCchhh
Q 036905 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240 (354)
Q Consensus 208 ~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~ 240 (354)
+.+.+.+|+..|||..+..++++|.++.++...
T Consensus 148 sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 148 SFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred hHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 999999999999999999999999999876543
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.1e-27 Score=234.16 Aligned_cols=217 Identities=18% Similarity=0.205 Sum_probs=161.6
Q ss_pred ccceeEEEecCchhhHHHHHH---hcccccc--ccc----------cc------cCCCCCCeEEEcCCCCCCcHHHHHHH
Q 036905 15 ILGTPFSLYVGDLDSTDLLRL---CSALIAS--IDV----------HS------AMATPTFIPFTVNLASTIDNWKLHQI 73 (354)
Q Consensus 15 ~~g~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~----------~~------~~~~~~~~lfV~nLp~~~te~~L~~~ 73 (354)
+.|++|+.|....+++.++.. ....+.. +.+ .. .......+|||+||++++|+++|+++
T Consensus 37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~ 116 (481)
T TIGR01649 37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQI 116 (481)
T ss_pred CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHH
Confidence 458999999999999988763 2222221 111 00 01122347999999999999999999
Q ss_pred HhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCC--eEEEecccccccc------ccccccccccc
Q 036905 74 FSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG--MELYAPSLRAGRI------QESASFNNLYV 145 (354)
Q Consensus 74 F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g--~~i~~~~~~~~~~------~~~~~~~~~~~ 145 (354)
|+.||.|.+|+|.++. .+|+|||+|.+.++|.+|++.|||..|.+ +.|.+.|.+.... ...+.+++...
T Consensus 117 F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l 193 (481)
T TIGR01649 117 FNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDL 193 (481)
T ss_pred HhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCC
Confidence 9999999999998764 24799999999999999999999999965 4666666553110 00101110000
Q ss_pred c--------------C--------------------------------------------------CC--c---hhhhhc
Q 036905 146 K--------------N--------------------------------------------------LD--D---DVTEEI 156 (354)
Q Consensus 146 ~--------------~--------------------------------------------------~~--~---~~~~~~ 156 (354)
. . .. . ......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (481)
T TIGR01649 194 PGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGG 273 (481)
T ss_pred CCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCC
Confidence 0 0 00 0 000122
Q ss_pred CCceEEEeCCCC-ccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNIND-DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~-~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+||++ .+|+++|+++|+.||.|.+|+|+++ .+|||||+|.+.++|.+|+..|||..|.|++|+|.+++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 457999999997 6999999999999999999999987 36899999999999999999999999999999999987
Q ss_pred Cch
Q 036905 236 TKR 238 (354)
Q Consensus 236 ~~~ 238 (354)
.+.
T Consensus 350 ~~~ 352 (481)
T TIGR01649 350 QQN 352 (481)
T ss_pred ccc
Confidence 654
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=9.7e-28 Score=234.66 Aligned_cols=182 Identities=16% Similarity=0.280 Sum_probs=146.1
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLAS-TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
.++++|||+||++ ++|+++|+++|+.||.|.+|+|+.+. +|||||+|.+.++|+.|+..|||..|.|+.|.+.+.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 3678999999998 69999999999999999999999873 689999999999999999999999999999998876
Q ss_pred ccccccccc------------ccccccccCCCch-----hhhhcCCceEEEeCCCCccCHHHHHHHhhcCCC--eeEEEE
Q 036905 130 RAGRIQESA------------SFNNLYVKNLDDD-----VTEEILDKNLYVKNINDDVDEIELKQYFSQCGI--ISSVKI 190 (354)
Q Consensus 130 ~~~~~~~~~------------~~~~~~~~~~~~~-----~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~--v~~v~i 190 (354)
+........ .+........... ........+|||+|||.++|+++|+++|+.||. |+.+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 553211100 0000000000000 001124578999999999999999999999998 888988
Q ss_pred eeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCee------EEEEeccCc
Q 036905 191 MRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP------LYVAIAQTK 237 (354)
Q Consensus 191 ~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~------l~v~~a~~~ 237 (354)
....++ ++|+|||+|++.++|.+|+..|||..|.|+. |+|+|++++
T Consensus 429 ~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 429 FPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 766544 5899999999999999999999999999985 999999764
No 19
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.5e-28 Score=222.15 Aligned_cols=227 Identities=23% Similarity=0.359 Sum_probs=179.3
Q ss_pred CCCccceeEEEecCchhhHHHHHHhc--cccc---------cccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCe
Q 036905 12 DSAILGTPFSLYVGDLDSTDLLRLCS--ALIA---------SIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDI 80 (354)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i 80 (354)
.+.+.||||+.|...+++..++.... +++. -.+.........++|||+-|++.+||.+++++|++||.|
T Consensus 72 t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~I 151 (510)
T KOG0144|consen 72 TGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHI 151 (510)
T ss_pred cCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCcc
Confidence 45889999999999999887765554 3443 222223444557899999999999999999999999999
Q ss_pred eEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCc-cCC--eEEEeccccccccccccc-----------------c
Q 036905 81 QSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT-VEG--MELYAPSLRAGRIQESAS-----------------F 140 (354)
Q Consensus 81 ~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~-i~g--~~i~~~~~~~~~~~~~~~-----------------~ 140 (354)
++|.|++|..+.|||||||.|.+.|.|..||+.|||.. +.| ..|.|+|....+...... |
T Consensus 152 ed~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~ 231 (510)
T KOG0144|consen 152 EDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNP 231 (510)
T ss_pred chhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999965 554 456688877644222111 1
Q ss_pred cccccc-CCCchhhh--------hcC------C-----------------------------------------------
Q 036905 141 NNLYVK-NLDDDVTE--------EIL------D----------------------------------------------- 158 (354)
Q Consensus 141 ~~~~~~-~~~~~~~~--------~~~------~----------------------------------------------- 158 (354)
.++..- .+...... ... .
T Consensus 232 ~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~ 311 (510)
T KOG0144|consen 232 QNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTS 311 (510)
T ss_pred cchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCC
Confidence 110000 00000000 000 0
Q ss_pred --------------------------------------------------------------------------------
Q 036905 159 -------------------------------------------------------------------------------- 158 (354)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (354)
T Consensus 312 ~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~ 391 (510)
T KOG0144|consen 312 PQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYA 391 (510)
T ss_pred CccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhh
Confidence
Q ss_pred ---------------------------------ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEE
Q 036905 159 ---------------------------------KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFV 204 (354)
Q Consensus 159 ---------------------------------~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV 204 (354)
.+|||.+||.+.-+.+|...|..||.|.+.++..|+ +|.+++|+||
T Consensus 392 q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfv 471 (510)
T KOG0144|consen 392 QSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFV 471 (510)
T ss_pred hhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcc
Confidence 889999999999999999999999999999999998 9999999999
Q ss_pred EeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 205 ~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
.|++..+|..||..|||+.|++++++|.....+.
T Consensus 472 Syen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 472 SYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred cccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 9999999999999999999999999999987654
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.5e-26 Score=226.11 Aligned_cols=226 Identities=23% Similarity=0.303 Sum_probs=172.3
Q ss_pred CCCCccceeEEEecCchhhHHHHHHhcccccccccc------------------ccCCCCCCeEEEcCCCCCCcHHHHHH
Q 036905 11 NDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVH------------------SAMATPTFIPFTVNLASTIDNWKLHQ 72 (354)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~lfV~nLp~~~te~~L~~ 72 (354)
+.+.+.|++|+.|....+++.++.++...+....+. .......++|||+|||.++|+++|++
T Consensus 126 ~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~ 205 (457)
T TIGR01622 126 NSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQ 205 (457)
T ss_pred CCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHH
Confidence 457789999999999999999988776554311110 01112258999999999999999999
Q ss_pred HHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccccccccc--cccc---------
Q 036905 73 IFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQE--SASF--------- 140 (354)
Q Consensus 73 ~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~~~~--~~~~--------- 140 (354)
+|+.||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.|||..|.|+.|.+.+........ ...+
T Consensus 206 ~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~ 285 (457)
T TIGR01622 206 IFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQM 285 (457)
T ss_pred HHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccC
Confidence 99999999999999998 78999999999999999999999999999999999988744210000 0000
Q ss_pred -------------------c---ccccc--------------------CCC--------------chhh---hhcCCceE
Q 036905 141 -------------------N---NLYVK--------------------NLD--------------DDVT---EEILDKNL 161 (354)
Q Consensus 141 -------------------~---~~~~~--------------------~~~--------------~~~~---~~~~~~~l 161 (354)
. ...+. ..+ .... ......+|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 365 (457)
T TIGR01622 286 GKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCL 365 (457)
T ss_pred CcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEE
Confidence 0 00000 000 0000 11344789
Q ss_pred EEeCCCCccC----------HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 036905 162 YVKNINDDVD----------EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231 (354)
Q Consensus 162 ~v~nl~~~~t----------~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 231 (354)
+|.||....+ .++|++.|++||.|+.|.|.... +.|++||+|.+.++|.+|+..|||+.|+|+.|.|
T Consensus 366 ~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~---~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~ 442 (457)
T TIGR01622 366 VLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKN---SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITA 442 (457)
T ss_pred EEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCC---CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEE
Confidence 9999955433 36899999999999999997432 5799999999999999999999999999999999
Q ss_pred EeccCchh
Q 036905 232 AIAQTKRE 239 (354)
Q Consensus 232 ~~a~~~~~ 239 (354)
.|......
T Consensus 443 ~~~~~~~~ 450 (457)
T TIGR01622 443 AFVVNDVY 450 (457)
T ss_pred EEEcHHHH
Confidence 99876553
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=3.8e-27 Score=229.78 Aligned_cols=162 Identities=21% Similarity=0.291 Sum_probs=137.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccC-CeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE-GMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~-g~~i~~~~~ 129 (354)
...++|||+|||++++|++|+++|++||.|.+|+|++|.+|+++|||||+|.+.++|++||+.||+..+. ++.|.+...
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3468999999999999999999999999999999999999999999999999999999999999998875 554443221
Q ss_pred cccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCC-eeEEEEeeC--CCCCeeeEEEEEe
Q 036905 130 RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGI-ISSVKIMRT--NRGISKGFGFVCF 206 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~-v~~v~i~~~--~~g~~kg~afV~f 206 (354)
. ..++|||+|||.++++++|.++|++++. ++++.+... ..++++|||||+|
T Consensus 136 ~--------------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF 189 (578)
T TIGR01648 136 V--------------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEY 189 (578)
T ss_pred c--------------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEc
Confidence 0 1278999999999999999999999863 455544432 2567899999999
Q ss_pred CCHHHHHHHHHHhCC--ceeCCeeEEEEeccCch
Q 036905 207 SNPDEANRAINTLNG--ILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 207 ~~~~~A~~Ai~~l~g--~~i~g~~l~v~~a~~~~ 238 (354)
+++++|.+|++.|+. ..+.|+.|.|.|+.++.
T Consensus 190 ~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 190 ESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred CCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 999999999998864 36789999999997643
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.8e-27 Score=218.53 Aligned_cols=186 Identities=24% Similarity=0.366 Sum_probs=158.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc-
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA- 131 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~- 131 (354)
.+|||++||++++.++|.++|+.+|.|..|.++++. ++.++|||||.|.-.|++++|+..+++..+.|+.|.+.....
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 699999999999999999999999999999999999 889999999999999999999999999999999999766655
Q ss_pred cccccccccccccccCCCc-----hhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q 036905 132 GRIQESASFNNLYVKNLDD-----DVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCF 206 (354)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f 206 (354)
.+........+..+...-. ...-......|.|+|||+.+.+.+|..+|+.||.|..|.|++...|.-.|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 3333222222222221111 11113335899999999999999999999999999999999988888889999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeccCchh
Q 036905 207 SNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 207 ~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~ 239 (354)
....+|..|++.+||..|+||+|-|.||-.+..
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999999977653
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.3e-26 Score=229.55 Aligned_cols=184 Identities=18% Similarity=0.230 Sum_probs=142.3
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhc------------CCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhh
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKF------------GDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY 115 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~------------G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 115 (354)
......++|||+|||+++|+++|+++|..| +.|..+.+ ++.+|||||+|.+.++|..||. ||
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 345567899999999999999999999975 23343433 4568999999999999999995 99
Q ss_pred hCccCCeEEEecccccccccc------ccccccccccCC---CchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCee
Q 036905 116 AATVEGMELYAPSLRAGRIQE------SASFNNLYVKNL---DDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIIS 186 (354)
Q Consensus 116 g~~i~g~~i~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~ 186 (354)
|..+.|+.|.+.......... ............ ...........+|||+|||..+|+++|+++|+.||.|.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 999999999865432211000 000000000000 00011123347999999999999999999999999999
Q ss_pred EEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 187 SVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 187 ~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.+.++.+. +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 99999987 8999999999999999999999999999999999999998643
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.9e-26 Score=212.68 Aligned_cols=233 Identities=24% Similarity=0.346 Sum_probs=175.1
Q ss_pred CCCCccceeEEEecCchhhHHHHHHhcc------ccc---------cc--------ccc----------ccCCCCCCeEE
Q 036905 11 NDSAILGTPFSLYVGDLDSTDLLRLCSA------LIA---------SI--------DVH----------SAMATPTFIPF 57 (354)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~---------~~--------~~~----------~~~~~~~~~lf 57 (354)
+.+.++||+|+.|.=.+|.+.++..-.. .+. +- .+. .....+.-+|.
T Consensus 42 gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLI 121 (678)
T KOG0127|consen 42 GSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLI 121 (678)
T ss_pred CcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEE
Confidence 3447899999999998888765443321 110 00 000 00122367899
Q ss_pred EcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc-ccccc
Q 036905 58 TVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA-GRIQE 136 (354)
Q Consensus 58 V~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~-~~~~~ 136 (354)
|+|||+.+...+|+.+|+.||.|.+|.|.+...|+-.|||||+|....+|..|++.+||..|.||.|.+-|.-. +....
T Consensus 122 IRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 122 IRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred eecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 99999999999999999999999999999887888889999999999999999999999999999999777544 21110
Q ss_pred cc-----------------c----cccc------cccCCCch---------------------h----------------
Q 036905 137 SA-----------------S----FNNL------YVKNLDDD---------------------V---------------- 152 (354)
Q Consensus 137 ~~-----------------~----~~~~------~~~~~~~~---------------------~---------------- 152 (354)
.. . .... .....+.. .
T Consensus 202 ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q 281 (678)
T KOG0127|consen 202 TAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQ 281 (678)
T ss_pred cchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhc
Confidence 00 0 0000 00000000 0
Q ss_pred -----hhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHh-----CC
Q 036905 153 -----TEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTL-----NG 221 (354)
Q Consensus 153 -----~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l-----~g 221 (354)
.+.....+|||+|||+++|+++|.++|++||.|.++.|+.++ +|.++|.|||.|.+..+|..||... .|
T Consensus 282 ~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g 361 (678)
T KOG0127|consen 282 NKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDG 361 (678)
T ss_pred cccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCc
Confidence 000011789999999999999999999999999999999998 9999999999999999999999866 34
Q ss_pred -ceeCCeeEEEEeccCchhhhHH
Q 036905 222 -ILFHQKPLYVAIAQTKRERTSY 243 (354)
Q Consensus 222 -~~i~g~~l~v~~a~~~~~~~~~ 243 (354)
..|+||.|.|..|-.++.....
T Consensus 362 ~~ll~GR~Lkv~~Av~RkeA~dm 384 (678)
T KOG0127|consen 362 SVLLDGRLLKVTLAVTRKEAADM 384 (678)
T ss_pred eEEEeccEEeeeeccchHHHHHH
Confidence 7789999999999887765443
No 25
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=2.5e-27 Score=204.47 Aligned_cols=151 Identities=24% Similarity=0.425 Sum_probs=138.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~ 133 (354)
.+|||+|||.++++.+|+.+|++||+|++|.|++ .||||+.++...|+.||..|||..|+|..|.|+.++..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK-------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec-------ccceEEeecccccHHHHhhcccceecceEEEEEecccc-
Confidence 4799999999999999999999999999999995 49999999999999999999999999999998765432
Q ss_pred cccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHH
Q 036905 134 IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEAN 213 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~ 213 (354)
...+.+|+|+||.+.++.++|+..|++||.|..|+|+++ |+||.|+..++|.
T Consensus 75 ---------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~ 126 (346)
T KOG0109|consen 75 ---------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAV 126 (346)
T ss_pred ---------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchH
Confidence 122378999999999999999999999999999999976 9999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEeccCchhh
Q 036905 214 RAINTLNGILFHQKPLYVAIAQTKRER 240 (354)
Q Consensus 214 ~Ai~~l~g~~i~g~~l~v~~a~~~~~~ 240 (354)
.|+..|||..|.|++++|.++..+-.-
T Consensus 127 ~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 127 EAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred HHHhcccccccccceeeeeeecccccc
Confidence 999999999999999999999766443
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.8e-26 Score=215.62 Aligned_cols=161 Identities=27% Similarity=0.444 Sum_probs=150.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~ 133 (354)
..|||+ +++||..|+++|+.+|.|++++|++|. + |.|||||.|.+.++|++|++.+|...+.|+.+++-|..++.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 368999 899999999999999999999999999 6 99999999999999999999999999999999988876533
Q ss_pred cccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHH
Q 036905 134 IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEAN 213 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~ 213 (354)
..|||+||+.++|..+|.++|+.||.|.+|++..+.+| ++|| ||+|+++++|.
T Consensus 77 -------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~ 129 (369)
T KOG0123|consen 77 -------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAK 129 (369)
T ss_pred -------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHH
Confidence 12999999999999999999999999999999999998 8999 99999999999
Q ss_pred HHHHHhCCceeCCeeEEEEeccCchhhhHHHHH
Q 036905 214 RAINTLNGILFHQKPLYVAIAQTKRERTSYLRI 246 (354)
Q Consensus 214 ~Ai~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~ 246 (354)
+|++.|||..+.|+.|.|....+++.|......
T Consensus 130 ~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~ 162 (369)
T KOG0123|consen 130 KAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE 162 (369)
T ss_pred HHHHHhcCcccCCCeeEEeeccchhhhcccccc
Confidence 999999999999999999999999988765554
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.5e-26 Score=207.07 Aligned_cols=163 Identities=22% Similarity=0.331 Sum_probs=141.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccC-CeEEEecc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVE-GMELYAPS 128 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~-g~~i~~~~ 128 (354)
..-+.|||+.||.++.|++|..+|++.|+|-+++++.|+ +|.+||||||.|.+.++|++||+.||+.+|. |+.|.|-.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 446899999999999999999999999999999999998 9999999999999999999999999999885 55555322
Q ss_pred ccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCC-CeeEEEEeeCC--CCCeeeEEEEE
Q 036905 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTN--RGISKGFGFVC 205 (354)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~v~i~~~~--~g~~kg~afV~ 205 (354)
+- ..++|||+|||...++++|.+.|++.+ -|.+|.+..+. ..+.||||||+
T Consensus 161 Sv--------------------------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFve 214 (506)
T KOG0117|consen 161 SV--------------------------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVE 214 (506)
T ss_pred ee--------------------------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEE
Confidence 11 127899999999999999999999987 47777777665 66789999999
Q ss_pred eCCHHHHHHHHHHh-CC-ceeCCeeEEEEeccCchh
Q 036905 206 FSNPDEANRAINTL-NG-ILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 206 f~~~~~A~~Ai~~l-~g-~~i~g~~l~v~~a~~~~~ 239 (354)
|.++..|..|-++| +| ..+-|..+.|.||.+++.
T Consensus 215 Ye~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e 250 (506)
T KOG0117|consen 215 YESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEE 250 (506)
T ss_pred eecchhHHHHHhhccCCceeecCCcceeeccCcccC
Confidence 99999999998877 44 467899999999987653
No 28
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.5e-26 Score=197.29 Aligned_cols=190 Identities=28% Similarity=0.393 Sum_probs=153.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCc-cCC--eEEEecc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT-VEG--MELYAPS 128 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~-i~g--~~i~~~~ 128 (354)
.+++|||+.|.+.-.|+|++.+|..||.|++|.+.+..+|.+||||||.|.+..+|..||..|+|.. +.| ..+.+++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5789999999999999999999999999999999999999999999999999999999999999865 333 3445776
Q ss_pred cccccccccc----------ccccccc-------------------------cCCCchhhhh------------------
Q 036905 129 LRAGRIQESA----------SFNNLYV-------------------------KNLDDDVTEE------------------ 155 (354)
Q Consensus 129 ~~~~~~~~~~----------~~~~~~~-------------------------~~~~~~~~~~------------------ 155 (354)
...++..... -++.+.. ..+.......
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 6553311000 0000000 0000000000
Q ss_pred ---------cCC--------------------------------------------------------------------
Q 036905 156 ---------ILD-------------------------------------------------------------------- 158 (354)
Q Consensus 156 ---------~~~-------------------------------------------------------------------- 158 (354)
...
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 000
Q ss_pred ----------------------------ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCH
Q 036905 159 ----------------------------KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNP 209 (354)
Q Consensus 159 ----------------------------~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~ 209 (354)
++|||-.||.+..+.+|.+.|-.||.|++.++..|+ ++.||+||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeccCchhhh
Q 036905 210 DEANRAINTLNGILFHQKPLYVAIAQTKRERT 241 (354)
Q Consensus 210 ~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~ 241 (354)
.+|..||..|||+.|+-|+|+|.+.++|+..+
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999887654
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.93 E-value=2.8e-24 Score=210.07 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=98.9
Q ss_pred CCCCccceeEEEecCchhhHHHHHH-hccccc--ccccc---------------ccCCCCCCeEEEcCCCCCCcHHHHHH
Q 036905 11 NDSAILGTPFSLYVGDLDSTDLLRL-CSALIA--SIDVH---------------SAMATPTFIPFTVNLASTIDNWKLHQ 72 (354)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~---------------~~~~~~~~~lfV~nLp~~~te~~L~~ 72 (354)
..+++.||+|+.|....+++.+++. +...+. .+.+. .......++|||+|||+++++++|++
T Consensus 144 ~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~ 223 (612)
T TIGR01645 144 ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKS 223 (612)
T ss_pred CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHH
Confidence 4578999999999999999988763 333332 11111 01122457999999999999999999
Q ss_pred HHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 73 IFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 73 ~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
+|+.||.|.+|+|.+|. +|+++|||||+|++.++|.+||+.||+..++|+.|.+.+.
T Consensus 224 lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 224 VFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred HHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 99999999999999998 8899999999999999999999999999999999996543
No 30
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.1e-24 Score=193.31 Aligned_cols=175 Identities=23% Similarity=0.344 Sum_probs=149.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
-++||||.+.+.+.|+.|+..|..||.|.+|.+.+|+ |+++||||||+|+-.|.|..|++.|||..++||.|.+-....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4789999999999999999999999999999999999 999999999999999999999999999999999998542111
Q ss_pred -cccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCH
Q 036905 132 -GRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNP 209 (354)
Q Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~ 209 (354)
.... .-++.-..+...-++|||..+..+++++||+..|+.||+|.+|++-+++ .+..|||||++|.+.
T Consensus 193 mpQAQ----------piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~ 262 (544)
T KOG0124|consen 193 MPQAQ----------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 262 (544)
T ss_pred Ccccc----------hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccc
Confidence 1100 0000111112223789999999999999999999999999999999999 556799999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 210 DEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 210 ~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.+...||..||-+.++|..|+|.-+-..
T Consensus 263 qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 263 QSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred cchHHHhhhcchhhcccceEecccccCC
Confidence 9999999999999999999999876443
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=2.3e-23 Score=199.39 Aligned_cols=179 Identities=25% Similarity=0.387 Sum_probs=151.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCC----CceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDG----KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g----~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
++|||+||.+++|.++|..+|...|.|.+|.|...+++ .|.|||||+|.+.++|+.|++.|+|+.|.|+.|.++++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 44999999999999999999999999999998887644 35699999999999999999999999999999998776
Q ss_pred cccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCC
Q 036905 130 RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSN 208 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~ 208 (354)
....... + ..........++|.|+|||+..+..+++.+|..||.|.+|+|+... .+..+|||||.|-+
T Consensus 596 ~~k~~~~------~-----gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 596 ENKPAST------V-----GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred cCccccc------c-----ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 5111000 0 0111111224789999999999999999999999999999999884 66679999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeccCchhhhHH
Q 036905 209 PDEANRAINTLNGILFHQKPLYVAIAQTKRERTSY 243 (354)
Q Consensus 209 ~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~~~ 243 (354)
+.+|.+|++.|....+.||+|.+.||+........
T Consensus 665 ~~ea~nA~~al~STHlyGRrLVLEwA~~d~~~e~~ 699 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYGRRLVLEWAKSDNTMEAL 699 (725)
T ss_pred cHHHHHHHHhhcccceechhhheehhccchHHHHH
Confidence 99999999999999999999999999987764433
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.89 E-value=3.9e-23 Score=186.73 Aligned_cols=174 Identities=24% Similarity=0.388 Sum_probs=148.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec-cc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP-SL 129 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~-~~ 129 (354)
..++|||++|+|+++++.|+++|..||+|.+|.+++|+ +++++||+||+|.+.+...+++. ..-+.|.|+.|..+ ..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999 99999999999999999999886 35667888888733 32
Q ss_pred cccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCC
Q 036905 130 RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSN 208 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~ 208 (354)
+++........ ....+|||++|+.++++++++++|++||.|..+.++.|. +..++||+||.|.+
T Consensus 84 ~r~~~~~~~~~---------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~ 148 (311)
T KOG4205|consen 84 SREDQTKVGRH---------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDS 148 (311)
T ss_pred Ccccccccccc---------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecc
Confidence 22221111110 123789999999999999999999999999999999998 88899999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeccCchhhhH
Q 036905 209 PDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242 (354)
Q Consensus 209 ~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~~ 242 (354)
++++.+++. ..-+.|.|+.+.|.-|.+++....
T Consensus 149 e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 149 EDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ccccceecc-cceeeecCceeeEeeccchhhccc
Confidence 999999987 578899999999999999886653
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.1e-22 Score=172.48 Aligned_cols=142 Identities=25% Similarity=0.430 Sum_probs=117.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
++..++|||+||+.++||+-|..||++.|.|.+|||+.| .+.+.|.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD----------------------------------ELKVNWA 48 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh----------------------------------hhccccc
Confidence 456789999999999999999999999999999999876 1112221
Q ss_pred cccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCC
Q 036905 130 RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSN 208 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~ 208 (354)
.... ...+ ........+||+.|...++-++|++.|.+||+|.+++|++|. +++|||||||.|-+
T Consensus 49 ~~p~-nQsk--------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~ 113 (321)
T KOG0148|consen 49 TAPG-NQSK--------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPN 113 (321)
T ss_pred cCcc-cCCC--------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccc
Confidence 1110 0000 000112568999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeccCchhh
Q 036905 209 PDEANRAINTLNGILFHQKPLYVAIAQTKRER 240 (354)
Q Consensus 209 ~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~ 240 (354)
.++|+.||..|||..|++|.|+-.||.+|..+
T Consensus 114 k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e 145 (321)
T KOG0148|consen 114 KEDAENAIQQMNGQWLGRRTIRTNWATRKPSE 145 (321)
T ss_pred hHHHHHHHHHhCCeeeccceeeccccccCccc
Confidence 99999999999999999999999999988743
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.87 E-value=1.1e-22 Score=189.96 Aligned_cols=185 Identities=24% Similarity=0.411 Sum_probs=155.2
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
...+...+++|+--|...++..+|+++|+.+|.|.+|.++.|. +++++|.|||+|.+.++...||. |.|..+.|..|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeE
Confidence 3444557899999999999999999999999999999999999 99999999999999999999994 999999999999
Q ss_pred eccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEE
Q 036905 126 APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFV 204 (354)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV 204 (354)
+...-.++............+..-.+. ..|||+||..++++++|+.+|+.||.|..|.++.|. +|.++|||||
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~------~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi 325 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPM------RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFI 325 (549)
T ss_pred ecccHHHHHHHHhccccccccccccch------hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceE
Confidence 877655332211111111111111111 239999999999999999999999999999999998 9999999999
Q ss_pred EeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 205 ~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
+|.+.++|.+|+..|||..|.|+.|+|.....+-
T Consensus 326 ~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 326 TFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred EEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 9999999999999999999999999999876443
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=1.5e-20 Score=175.65 Aligned_cols=184 Identities=22% Similarity=0.333 Sum_probs=137.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
.+-..|||+||..++++++|+.+|+.||.|..|.+..|. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.|-..
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 333449999999999999999999999999999999998 9999999999999999999999999999999999985443
Q ss_pred ccccccccc--c---cccccccCC------------------------------------Cc-----------hhhhh--
Q 036905 130 RAGRIQESA--S---FNNLYVKNL------------------------------------DD-----------DVTEE-- 155 (354)
Q Consensus 130 ~~~~~~~~~--~---~~~~~~~~~------------------------------------~~-----------~~~~~-- 155 (354)
......... . +....-..+ .. .....
T Consensus 356 ~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (549)
T KOG0147|consen 356 TERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADA 435 (549)
T ss_pred eeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccc
Confidence 321100000 0 000000000 00 00000
Q ss_pred -----cCCceEEEeCCCCccC----------HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 036905 156 -----ILDKNLYVKNINDDVD----------EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220 (354)
Q Consensus 156 -----~~~~~l~v~nl~~~~t----------~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 220 (354)
..+.++.++|+=+..| .+++.+.+++||.|..|.|.+. +-|+.||.|.+.++|..|+.+||
T Consensus 436 ~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 436 SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHh
Confidence 1113455666633222 2678888999999999999876 45899999999999999999999
Q ss_pred CceeCCeeEEEEeccCch
Q 036905 221 GILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 221 g~~i~g~~l~v~~a~~~~ 238 (354)
|++|.||.|+.+|-....
T Consensus 512 grWF~gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 512 GRWFAGRMITAKYLPLER 529 (549)
T ss_pred hhhhccceeEEEEeehhh
Confidence 999999999999976543
No 36
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.81 E-value=6.5e-19 Score=160.03 Aligned_cols=184 Identities=22% Similarity=0.319 Sum_probs=149.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHh-hcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFS-KFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
..+.+||.|+|++..+.+|+++|. +.|+|+.|.+..|.+|+++|||.|+|+++|.+++|++.||.+.+.||.|.++-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 345699999999999999999998 6899999999999999999999999999999999999999999999999977655
Q ss_pred ccc-cccc---cccccccccCC----------------------Cchhhh------------------------------
Q 036905 131 AGR-IQES---ASFNNLYVKNL----------------------DDDVTE------------------------------ 154 (354)
Q Consensus 131 ~~~-~~~~---~~~~~~~~~~~----------------------~~~~~~------------------------------ 154 (354)
.+. .... ..-...+...+ ....++
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 411 0000 00000000000 000000
Q ss_pred ---------hcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 036905 155 ---------EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225 (354)
Q Consensus 155 ---------~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~ 225 (354)
......+||.||...+....|.+.|.-.|.|..+.+-.|+.|.++|||.++|+++-+|-.||..|++..+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 01117799999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CeeEEEEecc
Q 036905 226 QKPLYVAIAQ 235 (354)
Q Consensus 226 g~~l~v~~a~ 235 (354)
+++..+.+..
T Consensus 283 ~~~~~~Rl~~ 292 (608)
T KOG4212|consen 283 DRRMTVRLDR 292 (608)
T ss_pred cccceeeccc
Confidence 8998888743
No 37
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.7e-18 Score=140.59 Aligned_cols=175 Identities=17% Similarity=0.222 Sum_probs=135.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
..+++|||+|||.+|.+.+|.++|.+||.|.+|.+...+ ..-.||||+|++..+|+.||..-+|..+.|..|.+++..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 457899999999999999999999999999999886543 235699999999999999999999999999999999887
Q ss_pred cccccccccc--ccccc----cCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEE
Q 036905 131 AGRIQESASF--NNLYV----KNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFV 204 (354)
Q Consensus 131 ~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV 204 (354)
..+....... ..-.- ..-............+.|.+||.+-++++|+++..+-|.|+...+.+| |++.|
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV 155 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVV 155 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceee
Confidence 7542211110 00000 000000111222378999999999999999999999999999999987 57999
Q ss_pred EeCCHHHHHHHHHHhCCceeC--CeeEEEEe
Q 036905 205 CFSNPDEANRAINTLNGILFH--QKPLYVAI 233 (354)
Q Consensus 205 ~f~~~~~A~~Ai~~l~g~~i~--g~~l~v~~ 233 (354)
+|...|+-+-|+..|+...+. |....+..
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred eeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 999999999999999887664 44444443
No 38
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=3.9e-18 Score=143.74 Aligned_cols=180 Identities=21% Similarity=0.314 Sum_probs=142.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHH----HHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQ----IFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~----~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
..+..+|||.||...+..++|+. +|++||.|++|... ++.+.+|-|||.|.+.+.|..|+..|+|..+.|+.+.
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 34455999999999999999888 99999999977655 4578999999999999999999999999999999998
Q ss_pred ecccccccccccc---ccc----c---------------------ccccCCCchh--hhhcCCceEEEeCCCCccCHHHH
Q 036905 126 APSLRAGRIQESA---SFN----N---------------------LYVKNLDDDV--TEEILDKNLYVKNINDDVDEIEL 175 (354)
Q Consensus 126 ~~~~~~~~~~~~~---~~~----~---------------------~~~~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~L 175 (354)
+.+...+...... .+. . ....+++... ........+|+.|||..++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 7776653311100 000 0 0001111111 12334478999999999999999
Q ss_pred HHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEecc
Q 036905 176 KQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH-QKPLYVAIAQ 235 (354)
Q Consensus 176 ~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~-g~~l~v~~a~ 235 (354)
..+|++|.....++++... ++.|||+|.+...|..|...+.|..|. ...+.|.+++
T Consensus 164 ~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999999863 568999999999999999999999987 8899998875
No 39
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=2.1e-17 Score=147.21 Aligned_cols=223 Identities=20% Similarity=0.285 Sum_probs=159.8
Q ss_pred CCCccceeEEEecCchhhHHHHHHhcccc-c--cccccc---------------cCCCCCCeEEEcCCCCCCcHHHHHHH
Q 036905 12 DSAILGTPFSLYVGDLDSTDLLRLCSALI-A--SIDVHS---------------AMATPTFIPFTVNLASTIDNWKLHQI 73 (354)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~---------------~~~~~~~~lfV~nLp~~~te~~L~~~ 73 (354)
.++..|++|+.|.-++.+.-+++..+..+ . ++.+.. .+...-.+|||..+.++.+|+||+..
T Consensus 151 T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSV 230 (544)
T KOG0124|consen 151 TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSV 230 (544)
T ss_pred cccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHH
Confidence 46778999999999999887766655332 2 222221 22234579999999999999999999
Q ss_pred HhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE-eccccccc-cccccccc---------
Q 036905 74 FSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSLRAGR-IQESASFN--------- 141 (354)
Q Consensus 74 F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~-~~~~~~~~-~~~~~~~~--------- 141 (354)
|+.||+|+.|++.+++ .+.+|||||++|.+..+-..||..||=..++|..++ .+...... ........
T Consensus 231 FEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVA 310 (544)
T KOG0124|consen 231 FEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVA 310 (544)
T ss_pred HHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHH
Confidence 9999999999999999 567899999999999999999999999999999988 33332211 00000000
Q ss_pred ---------------------ccccc--------------CCCchhhhhcCC----------------------------
Q 036905 142 ---------------------NLYVK--------------NLDDDVTEEILD---------------------------- 158 (354)
Q Consensus 142 ---------------------~~~~~--------------~~~~~~~~~~~~---------------------------- 158 (354)
.+-.. .++.........
T Consensus 311 aAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA 390 (544)
T KOG0124|consen 311 AAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILA 390 (544)
T ss_pred HHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhc
Confidence 00000 000000000000
Q ss_pred --------------------------------------------------------ceEEEeCC--CCccCH---HHHHH
Q 036905 159 --------------------------------------------------------KNLYVKNI--NDDVDE---IELKQ 177 (354)
Q Consensus 159 --------------------------------------------------------~~l~v~nl--~~~~t~---~~L~~ 177 (354)
+.|.++|+ |.++++ .+|++
T Consensus 391 ~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~E 470 (544)
T KOG0124|consen 391 SPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITE 470 (544)
T ss_pred CCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHH
Confidence 66778887 445544 68999
Q ss_pred HhhcCCCeeEEEEeeCCCCCe-----eeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 178 YFSQCGIISSVKIMRTNRGIS-----KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 178 ~F~~~G~v~~v~i~~~~~g~~-----kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
.+.+||.|.+|.|.....+.. ---.||+|+...++.+|...|+|+.|+|+++....-
T Consensus 471 ECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 471 ECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhh
Confidence 999999999999988764331 113799999999999999999999999999986643
No 40
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=9e-18 Score=156.39 Aligned_cols=127 Identities=23% Similarity=0.377 Sum_probs=102.4
Q ss_pred eeeeecc-CCCCccceeEEEecCchhhHHHHH-Hhcccccc--ccc----cccCCCCCCeEEEcCCCCCCcHHHHHHHHh
Q 036905 4 SLRALNN-NDSAILGTPFSLYVGDLDSTDLLR-LCSALIAS--IDV----HSAMATPTFIPFTVNLASTIDNWKLHQIFS 75 (354)
Q Consensus 4 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~----~~~~~~~~~~lfV~nLp~~~te~~L~~~F~ 75 (354)
+++++.+ +.+.+.|++|+.|.+..+++.+++ ++...+.. +.+ ........++|||+|||+++|+++|+++|+
T Consensus 136 ~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~ 215 (346)
T TIGR01659 136 TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFG 215 (346)
T ss_pred EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHH
Confidence 3455543 567889999999999999998875 44444431 111 122334577999999999999999999999
Q ss_pred hcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCC--eEEEecccc
Q 036905 76 KFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEG--MELYAPSLR 130 (354)
Q Consensus 76 ~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g--~~i~~~~~~ 130 (354)
+||+|.+|+|++|. +++++|||||+|.+.++|++||+.||+..+.+ +.|.|.+..
T Consensus 216 ~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~ 273 (346)
T TIGR01659 216 KYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAE 273 (346)
T ss_pred hcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 99999999999998 99999999999999999999999999998876 566666544
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=7.1e-18 Score=137.92 Aligned_cols=82 Identities=24% Similarity=0.494 Sum_probs=77.6
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+||+.++|+++|+++|++||.|.+|+|+.+. ++.++|||||+|++.++|++|++.||+..|+|++|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 34789999999999999999999999999999999988 89999999999999999999999999999999999999997
Q ss_pred Cch
Q 036905 236 TKR 238 (354)
Q Consensus 236 ~~~ 238 (354)
.+.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 653
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.75 E-value=7.1e-18 Score=137.93 Aligned_cols=82 Identities=26% Similarity=0.469 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...+++|||+|||+++|+++|+++|++||.|.+|+|+.|. +++++|||||+|.+.++|++|++.||+..|.|+.|.+.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4457799999999999999999999999999999999998 999999999999999999999999999999999999887
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 111 a~~ 113 (144)
T PLN03134 111 AND 113 (144)
T ss_pred CCc
Confidence 765
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=1.6e-17 Score=159.60 Aligned_cols=182 Identities=25% Similarity=0.366 Sum_probs=141.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
.....+.|+|+|||..+..++|..+|..||.|..+.+. +.|. -++|+|.+..+|.+|++.|....+....++.+|
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccc---eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 45566899999999999999999999999999987332 3332 399999999999999999999999999998888
Q ss_pred cccccccccc---cc--cc--------ccc-cCCCchh----------------hhhcCCceEEEeCCCCccCHHHHHHH
Q 036905 129 LRAGRIQESA---SF--NN--------LYV-KNLDDDV----------------TEEILDKNLYVKNINDDVDEIELKQY 178 (354)
Q Consensus 129 ~~~~~~~~~~---~~--~~--------~~~-~~~~~~~----------------~~~~~~~~l~v~nl~~~~t~~~L~~~ 178 (354)
.+.+...... .. .. ... ....... ......++|||+||++++|.++|..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 7764322000 00 00 000 0000000 00111144999999999999999999
Q ss_pred hhcCCCeeEEEEeeCCCCC----eeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 179 FSQCGIISSVKIMRTNRGI----SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 179 F~~~G~v~~v~i~~~~~g~----~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
|...|.|.++.|...+++. |.|||||+|.+.++|..|+..|+|+.|.|+.|.|+++.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999988766442 56999999999999999999999999999999999998
No 44
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.73 E-value=8e-17 Score=146.55 Aligned_cols=119 Identities=19% Similarity=0.265 Sum_probs=91.4
Q ss_pred cCCCCccceeEEEecCchhhHHHHHHhcccccccc-ccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeC
Q 036905 10 NNDSAILGTPFSLYVGDLDSTDLLRLCSALIASID-VHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS 88 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d 88 (354)
+.+..+.+.++.+|..+......+.+..-...-.. .+.-......++||.||...+..+.|++.|.-.|.|.++.+-.|
T Consensus 171 D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~id 250 (608)
T KOG4212|consen 171 DDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSID 250 (608)
T ss_pred cccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeec
Confidence 44566777778888887777666555553332111 11122334568999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 89 QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 89 ~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
+.|.++|++.++|.+.-+|..||..|++.-+.++...++.
T Consensus 251 KeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 251 KEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred cccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 9999999999999999999999999987666666555443
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.72 E-value=2.6e-16 Score=139.62 Aligned_cols=182 Identities=22% Similarity=0.271 Sum_probs=139.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCee--------EEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCe
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQ--------SSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~ 122 (354)
...+.|||.|||.++|.+++.++|++||-|. .|++.++..|..||-|.+.|-..++++.|++.|++..+.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3456799999999999999999999999886 38999999999999999999999999999999999999999
Q ss_pred EEEeccccccccc-----cccc--------cccccccCCCch-----hhhhcCCceEEEeCCCC----ccC-------HH
Q 036905 123 ELYAPSLRAGRIQ-----ESAS--------FNNLYVKNLDDD-----VTEEILDKNLYVKNIND----DVD-------EI 173 (354)
Q Consensus 123 ~i~~~~~~~~~~~-----~~~~--------~~~~~~~~~~~~-----~~~~~~~~~l~v~nl~~----~~t-------~~ 173 (354)
+|.|...+-+... .... ......+.+... .......++|.++|+=. ..+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 9997655442210 0000 000111111111 11122238899999832 122 36
Q ss_pred HHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 174 ~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
+|++-+++||.|.+|.|.... +.|.+-|.|.+.++|..||..|+|+.|+||.|..+.-.
T Consensus 292 dl~eec~K~G~v~~vvv~d~h---PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRH---PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhCCcceEEEeccC---CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 788889999999999988543 46789999999999999999999999999999887654
No 46
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.6e-17 Score=141.57 Aligned_cols=171 Identities=21% Similarity=0.322 Sum_probs=133.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~ 133 (354)
..+||++||+.+.+.+|.++|..||.|.+|.+. .||+||+|++..+|..|+..||+..+.+-.+.+.+.+..+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 369999999999999999999999999998775 5799999999999999999999999999887777776532
Q ss_pred ccccccccccccc-CCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHH
Q 036905 134 IQESASFNNLYVK-NLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEA 212 (354)
Q Consensus 134 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A 212 (354)
-........ .-. ....-.......+.+.|.|+...+.+.+|.++|..+|.++...++ ++++||+|++.++|
T Consensus 75 ~~~g~~~~g-~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 75 RGRGRPRGG-DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------RNFAFVEFSEQEDA 146 (216)
T ss_pred cccCCCCCC-CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------ccccceeehhhhhh
Confidence 111110000 000 000011112223789999999999999999999999999655552 56899999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEeccCchh
Q 036905 213 NRAINTLNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 213 ~~Ai~~l~g~~i~g~~l~v~~a~~~~~ 239 (354)
.+|+..|+|..+.|+.|++........
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~~~~~d~~ 173 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVEKNSRDRS 173 (216)
T ss_pred hhcchhccchhhcCceeeecccCcchh
Confidence 999999999999999999955544433
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.70 E-value=3.4e-16 Score=144.92 Aligned_cols=180 Identities=13% Similarity=0.203 Sum_probs=136.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
......|.+++|||++|++||.++|+.+ .|+++.+. ..+|+..|-|||+|.++|++++|++ .+.+.+..|.|.|--.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~-r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIP-RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEe-ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 3445688999999999999999999998 46764333 2379999999999999999999998 4888888898885433
Q ss_pred cccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeE-EEEeeCCCCCeeeEEEEEeCC
Q 036905 130 RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS-VKIMRTNRGISKGFGFVCFSN 208 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~-v~i~~~~~g~~kg~afV~f~~ 208 (354)
...... + ..+....... .....|.+++||+.+|++||.+||+-.-.|.. +.++.+..+++.|-|||+|++
T Consensus 84 ~~~e~d--~-----~~~~~g~~s~--~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~s 154 (510)
T KOG4211|consen 84 GGAEAD--W-----VMRPGGPNSS--ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFES 154 (510)
T ss_pred CCcccc--c-----cccCCCCCCC--CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecC
Confidence 221100 0 0011111100 12267899999999999999999997766655 567777788899999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeccCchhhhH
Q 036905 209 PDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242 (354)
Q Consensus 209 ~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~~ 242 (354)
.+.|++|+.. |...|+-|-|.|--+...+.++.
T Consensus 155 qe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~ 187 (510)
T KOG4211|consen 155 QESAEIALGR-HRENIGHRYIEVFRSSRAEVKRA 187 (510)
T ss_pred HHHHHHHHHH-HHHhhccceEEeehhHHHHHHhh
Confidence 9999999985 77888889999987766665543
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.70 E-value=9.1e-17 Score=114.94 Aligned_cols=70 Identities=36% Similarity=0.635 Sum_probs=67.6
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 56 PFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 56 lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
|||+|||+++|+++|+++|+.||.|..+++..+.++.++|||||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988899999999999999999999999999999999874
No 49
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=8.2e-16 Score=128.68 Aligned_cols=175 Identities=23% Similarity=0.332 Sum_probs=125.5
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC--CCCceeEEEEEeecHHHHHHHHHHhhhCccC---Ce
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ--DGKSKGYGFVQYSTQESALNAIEKLYAATVE---GM 122 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~--~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~---g~ 122 (354)
......++|||.+||.++...+|+.+|..|--.+.+.+.... ....+-+|||.|.+..+|..|+..|||.+++ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 344557899999999999999999999999777777776654 2234579999999999999999999999986 55
Q ss_pred EEEecccccccc----cccc---ccccccc--cC-----CCchhhhhc------CC------------------------
Q 036905 123 ELYAPSLRAGRI----QESA---SFNNLYV--KN-----LDDDVTEEI------LD------------------------ 158 (354)
Q Consensus 123 ~i~~~~~~~~~~----~~~~---~~~~~~~--~~-----~~~~~~~~~------~~------------------------ 158 (354)
.+.+.+.+.+.. .... ....+.. .+ ......... ..
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 666555544110 0000 0000000 00 000000000 00
Q ss_pred ----------------------ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHH
Q 036905 159 ----------------------KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216 (354)
Q Consensus 159 ----------------------~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai 216 (354)
.+|||-||..++||++|+.+|+.|-....++|... .| -..|||.|++.+.|..|+
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAM 265 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHH
Confidence 78999999999999999999999988777777643 33 247999999999999999
Q ss_pred HHhCCceeC
Q 036905 217 NTLNGILFH 225 (354)
Q Consensus 217 ~~l~g~~i~ 225 (354)
..|.|..|.
T Consensus 266 ~~lqg~~~s 274 (284)
T KOG1457|consen 266 NHLQGNLLS 274 (284)
T ss_pred HHhhcceec
Confidence 999998763
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.68 E-value=4.1e-16 Score=111.51 Aligned_cols=70 Identities=43% Similarity=0.738 Sum_probs=67.8
Q ss_pred EEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 036905 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230 (354)
Q Consensus 161 l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 230 (354)
|||+|||.++|+++|+++|+.||.|..+.+..+.++.++++|||+|++.++|.+|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999999985
No 51
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=4e-16 Score=148.02 Aligned_cols=188 Identities=20% Similarity=0.329 Sum_probs=143.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
....++||++||..+++..++++...||.+...+++.|. +|.++||||.+|.+......|+..|||+.++++++.+...
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 446789999999999999999999999999999999999 8999999999999999999999999999999999996655
Q ss_pred cccccccccccc--cccccCCCch--hhhhcCCceEEEeCC--CCcc-CH-------HHHHHHhhcCCCeeEEEEeeC-C
Q 036905 130 RAGRIQESASFN--NLYVKNLDDD--VTEEILDKNLYVKNI--NDDV-DE-------IELKQYFSQCGIISSVKIMRT-N 194 (354)
Q Consensus 130 ~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~l~v~nl--~~~~-t~-------~~L~~~F~~~G~v~~v~i~~~-~ 194 (354)
-.+......... ...+..++.. .........|.+.|+ +.++ ++ |+++..+..||.|.+|.|.++ .
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 543321111111 1123333332 111222244444444 1111 11 457777889999999999988 3
Q ss_pred C---CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 195 R---GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 195 ~---g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
. ....|..||+|.+.+++++|.++|+|..|+||.|..+|-...+
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 2 2346789999999999999999999999999999999987654
No 52
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.65 E-value=1.6e-15 Score=137.30 Aligned_cols=166 Identities=27% Similarity=0.338 Sum_probs=123.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
.++|||+|||+++|+++|+++|..||.|..+.+..|. +|.++|||||+|.+.++|..|++.++|..+.|+.|.+.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999997 999999999999999999999999999999999999877542
Q ss_pred ---cccccccc-cccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCC-eeeEEEEEe
Q 036905 132 ---GRIQESAS-FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGI-SKGFGFVCF 206 (354)
Q Consensus 132 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~-~kg~afV~f 206 (354)
.+...... .....................+++.+++..++..++...|..+|.+....+.....+. ...+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 11111100 0111111111112223334789999999999999999999999999777777665322 334444555
Q ss_pred CCHHHHHHHHHH
Q 036905 207 SNPDEANRAINT 218 (354)
Q Consensus 207 ~~~~~A~~Ai~~ 218 (354)
.....+......
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 555555554444
No 53
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=5.9e-16 Score=130.95 Aligned_cols=79 Identities=28% Similarity=0.421 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
..-++|||++|+|.+..++|+++|++||+|++..|+.|+ +|+|||||||+|++.++|.+|++. -.-.|+||+.-|...
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 345799999999999999999999999999999999999 999999999999999999999985 345578887765544
Q ss_pred c
Q 036905 130 R 130 (354)
Q Consensus 130 ~ 130 (354)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 3
No 54
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.5e-15 Score=133.91 Aligned_cols=80 Identities=35% Similarity=0.552 Sum_probs=75.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.++|+|.|||+...|.||+.+|++||.|.+|.|+.+..| |||||||+|++.+||++|-++|||.+|.||+|.|..|..+
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 389999999999999999999999999999999988755 6999999999999999999999999999999999999766
Q ss_pred h
Q 036905 238 R 238 (354)
Q Consensus 238 ~ 238 (354)
.
T Consensus 175 V 175 (376)
T KOG0125|consen 175 V 175 (376)
T ss_pred h
Confidence 4
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=3.4e-15 Score=107.00 Aligned_cols=70 Identities=30% Similarity=0.629 Sum_probs=65.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 56 PFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 56 lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
|||+|||+++++++|+++|+.||.|..+++..++++.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999988889999999999999999999999988999999874
No 56
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.60 E-value=9.5e-15 Score=104.64 Aligned_cols=70 Identities=33% Similarity=0.666 Sum_probs=65.5
Q ss_pred EEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 036905 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230 (354)
Q Consensus 161 l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 230 (354)
|||+|||.++++++|+++|+.||.|..+.+..+++|.++|+|||+|.+.++|.+|+..++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999988889999999999999999999999999999999885
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.5e-15 Score=126.05 Aligned_cols=81 Identities=35% Similarity=0.558 Sum_probs=78.0
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|.|.||+.++++++|+++|..||.|.++.+.+|. +|.+||||||+|++.++|.+||+.|||.-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 44889999999999999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred Cc
Q 036905 236 TK 237 (354)
Q Consensus 236 ~~ 237 (354)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 76
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.5e-15 Score=126.08 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
....+|.|.||+.+++|++|.++|.+||.|..|.|.+|+ ||.+||||||+|.+.++|.+||..|||.-+..-.|.++|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 456789999999999999999999999999999999999 9999999999999999999999999999999888889987
Q ss_pred cc
Q 036905 130 RA 131 (354)
Q Consensus 130 ~~ 131 (354)
+.
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 64
No 59
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.7e-15 Score=126.98 Aligned_cols=77 Identities=25% Similarity=0.476 Sum_probs=72.1
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
++|||++|+|.++.|+|+++|++||+|+++.|+.|+ +|+|||||||+|.+.++|.+|++. -.-.|+||+..|.+|--
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 789999999999999999999999999999999998 999999999999999999999985 45689999999998864
No 60
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=5.7e-15 Score=130.28 Aligned_cols=84 Identities=25% Similarity=0.381 Sum_probs=76.0
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
+......++|+|.|||....|-||+.+|.+||.|++|.|+.+..| |||||||+|++.+||++|.++|||..+.||+|.|
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 344455689999999999999999999999999999999998755 8999999999999999999999999999999997
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.....
T Consensus 169 n~ATa 173 (376)
T KOG0125|consen 169 NNATA 173 (376)
T ss_pred eccch
Confidence 76543
No 61
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.57 E-value=7e-14 Score=125.66 Aligned_cols=237 Identities=15% Similarity=0.127 Sum_probs=159.0
Q ss_pred eeeeccC-CCCccceeEEEecCchhhHHHHHHhc-----cccc-------------ccccc----ccCCCCCCeEEEcCC
Q 036905 5 LRALNNN-DSAILGTPFSLYVGDLDSTDLLRLCS-----ALIA-------------SIDVH----SAMATPTFIPFTVNL 61 (354)
Q Consensus 5 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~-------------~~~~~----~~~~~~~~~lfV~nL 61 (354)
.+++-+| .+...|++.+-|++++..+-+++-.. ..|. ...+. .-.....-.|.+++|
T Consensus 90 g~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGL 169 (508)
T KOG1365|consen 90 GRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGL 169 (508)
T ss_pred ceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCC
Confidence 3444444 34556788999988766653332221 1111 11111 011122446788999
Q ss_pred CCCCcHHHHHHHHhh----cCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe-ccccccc---
Q 036905 62 ASTIDNWKLHQIFSK----FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA-PSLRAGR--- 133 (354)
Q Consensus 62 p~~~te~~L~~~F~~----~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~-~~~~~~~--- 133 (354)
|.++++.|+.++|.. -|..+.|-+++..+|+..|-|||.|..+++|+.|+.+ |...++.|.|.+ +....+-
T Consensus 170 Pfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqv 248 (508)
T KOG1365|consen 170 PFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQV 248 (508)
T ss_pred CCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHH
Confidence 999999999999963 2356677788877999999999999999999999986 566666666652 2211111
Q ss_pred ---ccccccc---ccccccCCC-chhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCC-eeE--EEEeeCCCCCeeeEEE
Q 036905 134 ---IQESASF---NNLYVKNLD-DDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGI-ISS--VKIMRTNRGISKGFGF 203 (354)
Q Consensus 134 ---~~~~~~~---~~~~~~~~~-~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~-v~~--v~i~~~~~g~~kg~af 203 (354)
.....-. +.......+ ..........+|.+++||+..+.|+|.++|..|-. |.. |.++.+..|+..|-||
T Consensus 249 lnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAF 328 (508)
T KOG1365|consen 249 LNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAF 328 (508)
T ss_pred HHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhh
Confidence 0000000 000011011 11122233578999999999999999999999863 333 7888888999999999
Q ss_pred EEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchhhhH
Q 036905 204 VCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242 (354)
Q Consensus 204 V~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~~ 242 (354)
|+|.+.|+|..|....|.+...+|.|.|--+...+-...
T Consensus 329 Iqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~v 367 (508)
T KOG1365|consen 329 IQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNEV 367 (508)
T ss_pred hhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHHH
Confidence 999999999999999888888899999987776655443
No 62
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.57 E-value=9.1e-14 Score=125.94 Aligned_cols=177 Identities=20% Similarity=0.265 Sum_probs=135.7
Q ss_pred CCeEEEcCCC-CCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 53 TFIPFTVNLA-STIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 53 ~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
+..|-|.||- ..+|.+.|..+|.-||+|..|+|..++ +--|.|+|.+...|+.|++.|+|..+.|++|++.+++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 5788899996 459999999999999999999999875 35699999999999999999999999999999887765
Q ss_pred cccc------ccc----ccccccccCCC----chhh-hhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCC
Q 036905 132 GRIQ------ESA----SFNNLYVKNLD----DDVT-EEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG 196 (354)
Q Consensus 132 ~~~~------~~~----~~~~~~~~~~~----~~~~-~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g 196 (354)
.... ... .+.+....... ...- -..++.+|++.|+|.+++||+|++.|..-|...+.......
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k-- 450 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK-- 450 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC--
Confidence 2211 111 11111111111 1111 11234789999999999999999999988866554433322
Q ss_pred CeeeEEEEEeCCHHHHHHHHHHhCCceeCC-eeEEEEeccC
Q 036905 197 ISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYVAIAQT 236 (354)
Q Consensus 197 ~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g-~~l~v~~a~~ 236 (354)
.+.++.+.+++.|+|..|+-.+|...+++ ..|+|+|++.
T Consensus 451 -d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 451 -DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred -CcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 35699999999999999999999999875 5999999874
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.56 E-value=1.1e-14 Score=118.58 Aligned_cols=119 Identities=21% Similarity=0.284 Sum_probs=99.3
Q ss_pred CCccceeEEEecCchhhHHHHHHhc------cccc--cccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeE-E
Q 036905 13 SAILGTPFSLYVGDLDSTDLLRLCS------ALIA--SIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQS-S 83 (354)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v 83 (354)
+...||||+.|.+.+|++.+.++.+ +.|+ ..+....+.....+|||+||++++||..|+++|+.||.+.+ -
T Consensus 48 ~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P 127 (203)
T KOG0131|consen 48 QKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPP 127 (203)
T ss_pred ccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCC
Confidence 4678999999999999997655544 4444 22222344455689999999999999999999999999764 4
Q ss_pred EEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 84 KVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 84 ~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
++++|+ +|.++|||||.|.+.|.+.+|+..+||..+.++.+.+.+..+
T Consensus 128 ~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 128 KIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred cccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 789998 899999999999999999999999999999999999777665
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.2e-14 Score=124.58 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=70.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
++|||+||++.+|+++|+++|+.||.|.+|.|..+.. ++|||||+|+++++|..|+. |||..|.|+.|+|.++..
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 6899999999999999999999999999999998863 57999999999999999995 999999999999999753
No 65
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=7.3e-15 Score=121.68 Aligned_cols=79 Identities=27% Similarity=0.473 Sum_probs=76.0
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.+|.|-||.+.++.++|+.+|++||.|-+|.|..|. ++.++|||||.|.+..+|+.|++.|+|.+|+|+.|.|++|+-.
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcC
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999999999998643
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=4.2e-14 Score=123.85 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
.++|||+|||+++|+++|+++|+.||.|.+|.|..|. .++|||||+|++.++|+.||. |||..|.|+.|.+.+...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999999885 357999999999999999995 999999999999877654
No 67
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=3.2e-14 Score=115.06 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
-.++|||+||+.++++.||...|..||.|.+|+|...+ .|||||+|++..+|+.|+..|+|..|.|..|.|+...-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 36799999999999999999999999999999999865 78999999999999999999999999999999887665
No 68
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.49 E-value=8.4e-13 Score=122.66 Aligned_cols=221 Identities=14% Similarity=0.137 Sum_probs=155.7
Q ss_pred CCCCccceeEEEecCchhhHHHHHHhccccccc-----cc------------cccCCCCCCeEEEcCCCCCCcHHHHHHH
Q 036905 11 NDSAILGTPFSLYVGDLDSTDLLRLCSALIASI-----DV------------HSAMATPTFIPFTVNLASTIDNWKLHQI 73 (354)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------~~~~~~~~~~lfV~nLp~~~te~~L~~~ 73 (354)
.+++..|.+++.+.+.+|.+++++.+...+.+. .+ ..........|.+++||++||++||.++
T Consensus 44 ~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~F 123 (510)
T KOG4211|consen 44 RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEF 123 (510)
T ss_pred cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHH
Confidence 458889999999999999999998887555311 00 0122246789999999999999999999
Q ss_pred HhhcCCeeE-EEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc-cccccc----------cccc
Q 036905 74 FSKFGDIQS-SKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA-GRIQES----------ASFN 141 (354)
Q Consensus 74 F~~~G~i~~-v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~-~~~~~~----------~~~~ 141 (354)
|+..-.|.. +.+..+..+++.|-|||+|++.+.|++|+.. |...|+-|.|.+-.+.. +-.... ..+.
T Consensus 124 FaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~ 202 (510)
T KOG4211|consen 124 FAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYD 202 (510)
T ss_pred hcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccc
Confidence 997644433 5677777899999999999999999999985 67778877776332222 000000 0000
Q ss_pred -----cc------------------------------------c-------ccCCCchhh--h------------hcCCc
Q 036905 142 -----NL------------------------------------Y-------VKNLDDDVT--E------------EILDK 159 (354)
Q Consensus 142 -----~~------------------------------------~-------~~~~~~~~~--~------------~~~~~ 159 (354)
+. + -+.+..... . .....
T Consensus 203 ~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~ 282 (510)
T KOG4211|consen 203 RPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGH 282 (510)
T ss_pred cccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCc
Confidence 00 0 000000000 0 00005
Q ss_pred eEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
.++.++||...++.++.++|+..-. ..|.|-..++|+..|-|+|+|.+.++|..|+.+ ++..+..+-|..-.-
T Consensus 283 fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~ig~dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln 355 (510)
T KOG4211|consen 283 FVHMRGLPYDATENDIANFFSPLNP-YRVHIEIGPDGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLN 355 (510)
T ss_pred eeeecCCCccCCCcchhhhcCCCCc-eeEEEEeCCCCccCCcceeecccchhhHhhhcc-CCcccCcceeeeccc
Confidence 6889999999999999999997654 488898889999999999999999999999885 666666666655443
No 69
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=9.8e-14 Score=121.10 Aligned_cols=90 Identities=24% Similarity=0.409 Sum_probs=80.6
Q ss_pred ccccccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhC
Q 036905 39 LIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAA 117 (354)
Q Consensus 39 ~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~ 117 (354)
.+.....+....++-+||||+-|+.+++|++|+..|+.||.|..|.|++|. ||+++|||||+|+++.+...|.+..+|.
T Consensus 87 ~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 87 LWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred hcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 334334444555889999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred ccCCeEEEecc
Q 036905 118 TVEGMELYAPS 128 (354)
Q Consensus 118 ~i~g~~i~~~~ 128 (354)
.|+|+.|.|-.
T Consensus 167 ~Idgrri~VDv 177 (335)
T KOG0113|consen 167 KIDGRRILVDV 177 (335)
T ss_pred eecCcEEEEEe
Confidence 99999998544
No 70
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2e-13 Score=97.26 Aligned_cols=72 Identities=46% Similarity=0.716 Sum_probs=67.9
Q ss_pred eEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 036905 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 232 (354)
+|||+|||..+++++|+++|+.||.|..+.+..+. +.++|+|||+|.+.++|.+|+..++|..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999887 7788999999999999999999999999999999874
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=8.6e-14 Score=112.60 Aligned_cols=77 Identities=29% Similarity=0.507 Sum_probs=72.2
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.++|||+||+..+++.+|..+|..||.|.+|.|... +.|||||+|++..+|+.|+..|+|+.|.|..|+|.++.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 479999999999999999999999999999999986 5689999999999999999999999999999999998755
Q ss_pred h
Q 036905 238 R 238 (354)
Q Consensus 238 ~ 238 (354)
.
T Consensus 86 ~ 86 (195)
T KOG0107|consen 86 P 86 (195)
T ss_pred c
Confidence 4
No 72
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=2.8e-13 Score=96.48 Aligned_cols=71 Identities=38% Similarity=0.600 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 55 IPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 55 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
+|||+|||.++++++|+++|+.||.|..+++..+. +.++|+|||+|.+.++|++|++.+++..+.|+.+.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999887 778999999999999999999999999999988764
No 73
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.1e-13 Score=106.07 Aligned_cols=84 Identities=23% Similarity=0.367 Sum_probs=76.2
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
..+++|||+||...++||+|.++|+.+|.|..|.+=.|+ +..+-|||||+|.+.++|..|+.-++|..+++++|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 345899999999999999999999999999999888777 6668899999999999999999999999999999999997
Q ss_pred cCchh
Q 036905 235 QTKRE 239 (354)
Q Consensus 235 ~~~~~ 239 (354)
--=.+
T Consensus 114 ~GF~e 118 (153)
T KOG0121|consen 114 AGFVE 118 (153)
T ss_pred ccchh
Confidence 54443
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=6.2e-15 Score=119.75 Aligned_cols=77 Identities=27% Similarity=0.528 Sum_probs=74.1
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
.-|||+|||+.+||.||.-+|++||+|..|.+++|. +|+|+||||++|++..+..-|+.-|||..|.||.|+|....
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 679999999999999999999999999999999999 99999999999999999999999999999999999998653
No 75
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=4.3e-15 Score=120.65 Aligned_cols=79 Identities=22% Similarity=0.418 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
.+..|||+|||.+.||.||..+|++||+|++|.+++|. ||+|+||||+.|++..+...|+..|||..|.||.|+|-+..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 45789999999999999999999999999999999999 99999999999999999999999999999999999965544
No 76
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.4e-13 Score=105.60 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
..+++|||+||+..++|+.|+++|+++|+|..|-+=.|+ +...-||+||+|.+.++|+.|++.++|..+.++.|.+-|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 457899999999999999999999999999998888888 7778899999999999999999999999999999987664
Q ss_pred c
Q 036905 130 R 130 (354)
Q Consensus 130 ~ 130 (354)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 77
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=2.5e-13 Score=117.10 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=68.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
..++|||+||++++|+++|+++|+.||+|.+|+|++| ++++++|||+|++.++|+.|+. |+|..|.++.|.+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 3479999999999999999999999999999999988 5667899999999999999995 99999999999865433
No 78
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.46 E-value=9.6e-14 Score=115.10 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
+.+....|.|-||.+-++.++|+.+|++||.|.+|.|.+|. |+.++|||||.|....+|+.|++.|+|..++|+.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 44556789999999999999999999999999999999999 99999999999999999999999999999999999987
Q ss_pred cccccc
Q 036905 128 SLRAGR 133 (354)
Q Consensus 128 ~~~~~~ 133 (354)
.++-.+
T Consensus 89 ~arygr 94 (256)
T KOG4207|consen 89 MARYGR 94 (256)
T ss_pred hhhcCC
Confidence 776544
No 79
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.45 E-value=2.1e-12 Score=117.25 Aligned_cols=178 Identities=22% Similarity=0.244 Sum_probs=129.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCcee-EEEEEeecHHHHHHHHHHhhhCccCCe--EEEeccc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKG-YGFVQYSTQESALNAIEKLYAATVEGM--ELYAPSL 129 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg-~aFV~F~~~e~A~~Ai~~lng~~i~g~--~i~~~~~ 129 (354)
--+++|.|+-.-++-+-|+.+|++||.|..| ++-. ++.| -|.|+|.+.+.|..|...|+|..|.+- .+++.++
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKI--iTF~--Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKI--ITFT--KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEE--EEEe--cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 3467899999999999999999999999855 3322 2233 389999999999999999999987643 3334443
Q ss_pred cccc------cccccccccccccCC---------------------------Cch----------hhhhcCCceEEEeCC
Q 036905 130 RAGR------IQESASFNNLYVKNL---------------------------DDD----------VTEEILDKNLYVKNI 166 (354)
Q Consensus 130 ~~~~------~~~~~~~~~~~~~~~---------------------------~~~----------~~~~~~~~~l~v~nl 166 (354)
+-.. ......+++.+...- +.. .........|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 3211 011111222111110 000 000001367788888
Q ss_pred CC-ccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 167 ND-DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 167 ~~-~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
.. .+|.+.|..+|..||.|.+|+|+.++. --|.|.|.+...|.-|++.|+|..+.|++|+|.+++-..
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 65 589999999999999999999999852 469999999999999999999999999999999997544
No 80
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=9.5e-13 Score=123.15 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=117.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC--CC--Ccee---EEEEEeecHHHHHHHHHHhhhCccCC
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ--DG--KSKG---YGFVQYSTQESALNAIEKLYAATVEG 121 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~--~g--~skg---~aFV~F~~~e~A~~Ai~~lng~~i~g 121 (354)
...-+++||||+||++++|+.|...|..||.+. |...... .+ ..+| |+|+.|+++.++..-+..+.- ++
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cc
Confidence 334478999999999999999999999999865 2222111 11 2456 999999999998887765432 44
Q ss_pred eEEEeccc-cc--cccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhh-cCCCeeEEEEeeCC-CC
Q 036905 122 MELYAPSL-RA--GRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFS-QCGIISSVKIMRTN-RG 196 (354)
Q Consensus 122 ~~i~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~-~~G~v~~v~i~~~~-~g 196 (354)
.+.+.... +. ++......|.-............-+..+||||++||.-++.++|..+|+ .||.|..+-|-.|+ -+
T Consensus 331 ~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K 410 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK 410 (520)
T ss_pred cceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC
Confidence 44442111 11 1111111121111111112223345569999999999999999999998 79999999999995 77
Q ss_pred CeeeEEEEEeCCHHHHHHHHHH
Q 036905 197 ISKGFGFVCFSNPDEANRAINT 218 (354)
Q Consensus 197 ~~kg~afV~f~~~~~A~~Ai~~ 218 (354)
.++|-|-|+|++..+-.+||.+
T Consensus 411 YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 411 YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCcceeeecccHHHHHHHhh
Confidence 8999999999999999999984
No 81
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=3.3e-13 Score=99.73 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=70.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
..+.++.|||+|||.++|.++.+++|.+||.|..|+|-.. ...+|-|||.|++..+|++|+++|+|..+.++.+.+.+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc--cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3456789999999999999999999999999998888554 45689999999999999999999999999999998554
Q ss_pred c
Q 036905 129 L 129 (354)
Q Consensus 129 ~ 129 (354)
-
T Consensus 92 y 92 (124)
T KOG0114|consen 92 Y 92 (124)
T ss_pred c
Confidence 3
No 82
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=3e-13 Score=125.29 Aligned_cols=77 Identities=25% Similarity=0.461 Sum_probs=71.7
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCH--HHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNP--DEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~--~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.+|||+||.+.+++++|+..|+.||.|.+|.|++. +| ||||||+|.+. .++.+||..|||..+.|+.|+|..|++
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 78999999999999999999999999999999944 55 99999999987 789999999999999999999999987
Q ss_pred ch
Q 036905 237 KR 238 (354)
Q Consensus 237 ~~ 238 (354)
.=
T Consensus 88 ~Y 89 (759)
T PLN03213 88 HY 89 (759)
T ss_pred HH
Confidence 54
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.7e-13 Score=117.53 Aligned_cols=82 Identities=24% Similarity=0.487 Sum_probs=77.5
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
++-+||||.-|+.+++|.+|+..|+.||.|+.|.|+++. +|+++|||||+|+++-+...|....+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 445899999999999999999999999999999999997 9999999999999999999999999999999999999986
Q ss_pred cCc
Q 036905 235 QTK 237 (354)
Q Consensus 235 ~~~ 237 (354)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 543
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=5.4e-13 Score=94.58 Aligned_cols=69 Identities=36% Similarity=0.633 Sum_probs=65.0
Q ss_pred EcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 58 TVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 58 V~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
|+|||.++++++|+++|+.||.|..+++..+. ++.++|||||+|.+.++|..|++.+++..+.|+.+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 68999999999999999999999999999988 7899999999999999999999999999999988764
No 85
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=9.5e-13 Score=97.28 Aligned_cols=79 Identities=24% Similarity=0.423 Sum_probs=72.9
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
+.|||+|||+.+|.|+..++|.+||.|..|+|=.... .+|.|||.|++..+|.+|++.|+|..+.++.|.|-|-++.+
T Consensus 19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 7899999999999999999999999999999976653 58999999999999999999999999999999999987655
Q ss_pred h
Q 036905 239 E 239 (354)
Q Consensus 239 ~ 239 (354)
.
T Consensus 97 ~ 97 (124)
T KOG0114|consen 97 A 97 (124)
T ss_pred H
Confidence 3
No 86
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=6.5e-14 Score=132.40 Aligned_cols=78 Identities=29% Similarity=0.420 Sum_probs=75.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
+.|||||+|+++++++|.++|+..|.|.+++++.|+ +|+++||||++|.+.++|+.|++.|||..+.|++|++.|...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 899999999999999999999999999999999999 999999999999999999999999999999999999877665
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=7.6e-13 Score=114.12 Aligned_cols=75 Identities=21% Similarity=0.360 Sum_probs=69.3
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.+|||+||++.+|+++|+++|+.||.|.+|+|.++. ..++||||+|+++++|..|+. |+|..|.|++|.|.....
T Consensus 6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 689999999999999999999999999999999884 456899999999999999995 999999999999987654
No 88
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=2e-12 Score=92.49 Aligned_cols=74 Identities=39% Similarity=0.678 Sum_probs=69.9
Q ss_pred eEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 036905 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 233 (354)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+..+|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999988667799999999999999999999999999999999875
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.42 E-value=8.6e-13 Score=93.52 Aligned_cols=70 Identities=43% Similarity=0.705 Sum_probs=65.8
Q ss_pred EeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 036905 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232 (354)
Q Consensus 163 v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 232 (354)
|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..|++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887 68899999999999999999999999999999999874
No 90
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-13 Score=115.58 Aligned_cols=83 Identities=28% Similarity=0.476 Sum_probs=78.9
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||++|.+++|+.-|...|-.||.|.+|+++.|. +++.||||||+|...|+|..||..||+..+.||.|+|.+|++
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 3899999999999999999999999999999999998 889999999999999999999999999999999999999988
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
.+..
T Consensus 90 ~kik 93 (298)
T KOG0111|consen 90 EKIK 93 (298)
T ss_pred cccc
Confidence 6543
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=1.9e-12 Score=92.61 Aligned_cols=73 Identities=34% Similarity=0.578 Sum_probs=68.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 55 IPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 55 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
+|+|+|||.++++++|+++|+.||.|..+.+..+..+..+|+|||+|.+.++|..|++.+++..+.|+.+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999998866789999999999999999999999999999988754
No 92
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=8.2e-13 Score=124.99 Aligned_cols=85 Identities=32% Similarity=0.513 Sum_probs=80.6
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
+.+||+|+|+++++++|.++|+..|.|.+++++.|+ +|+++||||++|.+.++|.+|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999999999999877
Q ss_pred hhhhHH
Q 036905 238 RERTSY 243 (354)
Q Consensus 238 ~~~~~~ 243 (354)
+.+...
T Consensus 99 ~~~~~~ 104 (435)
T KOG0108|consen 99 KNAERS 104 (435)
T ss_pred chhHHH
Confidence 665543
No 93
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.39 E-value=7e-12 Score=121.99 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
.-++|||||.|+.++++.||.++|+.||+|.+|.++. ++|||||.+.+..+|.+|+.+|+...+.++.|++.|..
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3478999999999999999999999999999999875 48999999999999999999999999999999988866
Q ss_pred c
Q 036905 131 A 131 (354)
Q Consensus 131 ~ 131 (354)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.5e-13 Score=113.55 Aligned_cols=86 Identities=26% Similarity=0.446 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
.....++|||++|..++||+-|...|-+||.|.+|++..|. +++.+|||||+|+-.|+|..||..||+..+.||.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred ccccccc
Q 036905 128 SLRAGRI 134 (354)
Q Consensus 128 ~~~~~~~ 134 (354)
+.+..+.
T Consensus 86 ~AkP~ki 92 (298)
T KOG0111|consen 86 LAKPEKI 92 (298)
T ss_pred ecCCccc
Confidence 8877553
No 95
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.3e-12 Score=121.10 Aligned_cols=78 Identities=15% Similarity=0.269 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecH--HHHHHHHHHhhhCccCCeEEEecc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQ--ESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~--e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
....+||||||+++++++||+++|..||.|.+|.|++ .+| ||||||+|.+. +++.+||+.|||..+.|+.|.+..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 3457999999999999999999999999999999993 367 99999999987 789999999999999999999776
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
.+.
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 654
No 96
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=8.1e-13 Score=102.29 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=75.9
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
..|||.++....|+++|.+.|..||+|+.+.+-.|+ +|..||||+|+|++.++|++|+..|||..|-|..|.|.|+--+
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 789999999999999999999999999999999998 9999999999999999999999999999999999999998544
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=3.8e-13 Score=104.10 Aligned_cols=84 Identities=23% Similarity=0.387 Sum_probs=77.3
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
..+.....|||.++....||++|.+.|..||+|..+.+-.|+ ||..||||+|+|++.+.|++|+..+||..+.|..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 344556789999999999999999999999999999999999 9999999999999999999999999999999999997
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
-|.-.
T Consensus 147 Dw~Fv 151 (170)
T KOG0130|consen 147 DWCFV 151 (170)
T ss_pred EEEEe
Confidence 77654
No 98
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=2.8e-12 Score=87.48 Aligned_cols=56 Identities=39% Similarity=0.726 Sum_probs=51.6
Q ss_pred HHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 175 L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
|+++|++||.|.++.+..+. +++|||+|.+.++|.+|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998764 589999999999999999999999999999999986
No 99
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.35 E-value=7e-11 Score=106.25 Aligned_cols=185 Identities=18% Similarity=0.206 Sum_probs=137.3
Q ss_pred cCCCCCCeEEEcCCCCC-CcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLAST-IDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+...++|.+|+.. ++.+.|.++|..||+|+.|++++.+ .|-|.|++.+..+.++|+..||+..+.|.+|.+
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 44456789999999864 7889999999999999999999876 457999999999999999999999999999986
Q ss_pred cccccccccc---------ccccccccc-cC-------CCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCC-eeEE
Q 036905 127 PSLRAGRIQE---------SASFNNLYV-KN-------LDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGI-ISSV 188 (354)
Q Consensus 127 ~~~~~~~~~~---------~~~~~~~~~-~~-------~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~-v~~v 188 (354)
..++...... ..++..... ++ ......-..++++|+.-|.|..+||+.|.++|...+. -+++
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~sv 437 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSV 437 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceE
Confidence 6655433111 111111100 00 0000111234588999999999999999999987663 3667
Q ss_pred EEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe------eEEEEeccCc
Q 036905 189 KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK------PLYVAIAQTK 237 (354)
Q Consensus 189 ~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~------~l~v~~a~~~ 237 (354)
+|...++-+ ...+.++|++.++|..||..+|...|.+. .|++.|+..+
T Consensus 438 kvFp~kser-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 438 KVFPLKSER-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred Eeecccccc-cccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 777665433 23689999999999999999999999763 5566666544
No 100
>smart00361 RRM_1 RNA recognition motif.
Probab=99.34 E-value=4.8e-12 Score=90.50 Aligned_cols=61 Identities=25% Similarity=0.445 Sum_probs=54.2
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeeCC-C--CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 036905 172 EIELKQYFS----QCGIISSVK-IMRTN-R--GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232 (354)
Q Consensus 172 ~~~L~~~F~----~~G~v~~v~-i~~~~-~--g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 232 (354)
+++|+++|+ .||.|.++. |..++ + +.++|||||+|.+.++|.+|+..|||+.+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 55554 4 8899999999999999999999999999999999873
No 101
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.33 E-value=5.3e-12 Score=114.20 Aligned_cols=79 Identities=37% Similarity=0.643 Sum_probs=76.0
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..+|||+||+..+|+++|+++|..||.|..+.+..+. +|.++|||||+|.+.++|..|+..++|..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 4899999999999999999999999999999999996 999999999999999999999999999999999999999653
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.33 E-value=7e-11 Score=106.27 Aligned_cols=172 Identities=19% Similarity=0.205 Sum_probs=130.4
Q ss_pred EcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCC--eEEEeccccccc--
Q 036905 58 TVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG--MELYAPSLRAGR-- 133 (354)
Q Consensus 58 V~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g--~~i~~~~~~~~~-- 133 (354)
|-|-=+.||.+.|+.+....|.|..|.|.+. +| --|.|+|++.+.|++|...|||..|.. ..|++.+.+.++
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec-cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceee
Confidence 4455578999999999999999999988764 33 369999999999999999999998753 455577776644
Q ss_pred ----cccccccccccccCCCc-hhh---h---------------------------------------------------
Q 036905 134 ----IQESASFNNLYVKNLDD-DVT---E--------------------------------------------------- 154 (354)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~-~~~---~--------------------------------------------------- 154 (354)
....+.++......... ... .
T Consensus 203 V~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~ 282 (494)
T KOG1456|consen 203 VQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPG 282 (494)
T ss_pred eeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCC
Confidence 11122222221110000 000 0
Q ss_pred -hcCCceEEEeCCCCc-cCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 036905 155 -EILDKNLYVKNINDD-VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232 (354)
Q Consensus 155 -~~~~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 232 (354)
....+.+.|.+|+.. ++.+.|..+|..||.|..|++++.+. |.|.|++.|..+.++|+..||+..+.|.+|.|.
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 000167889999865 68899999999999999999999864 569999999999999999999999999999999
Q ss_pred eccCc
Q 036905 233 IAQTK 237 (354)
Q Consensus 233 ~a~~~ 237 (354)
+++..
T Consensus 359 ~SkQ~ 363 (494)
T KOG1456|consen 359 VSKQN 363 (494)
T ss_pred ecccc
Confidence 98754
No 103
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.6e-12 Score=109.69 Aligned_cols=93 Identities=34% Similarity=0.465 Sum_probs=83.8
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc-eeC--CeeEEEEecc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFH--QKPLYVAIAQ 235 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~-~i~--g~~l~v~~a~ 235 (354)
++|||+-|...-.|||++.+|..||.|++|.+.+..+|.+||++||.|++..+|..||..|||. ++- ...|.|+|++
T Consensus 20 rklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 20 RKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred hhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEecc
Confidence 7899999999999999999999999999999999999999999999999999999999999996 343 4799999999
Q ss_pred CchhhhHHHHHhhhhC
Q 036905 236 TKRERTSYLRIMYAKQ 251 (354)
Q Consensus 236 ~~~~~~~~~~~~~~~~ 251 (354)
..++|..+..+++..+
T Consensus 100 TdkER~lRRMQQma~q 115 (371)
T KOG0146|consen 100 TDKERTLRRMQQMAGQ 115 (371)
T ss_pred chHHHHHHHHHHHHHH
Confidence 9998877655555543
No 104
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=2.4e-12 Score=112.10 Aligned_cols=108 Identities=21% Similarity=0.308 Sum_probs=89.6
Q ss_pred cceeEEEecCchhhHHHHH-Hhccccc--cccc--cccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCC
Q 036905 16 LGTPFSLYVGDLDSTDLLR-LCSALIA--SIDV--HSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD 90 (354)
Q Consensus 16 ~g~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~ 90 (354)
..|||+.....-.++.+++ +..-.+. .+++ ....+..+++|+|+||.+.++.++|++.|++||.|.+|+|++
T Consensus 36 KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--- 112 (346)
T KOG0109|consen 36 KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--- 112 (346)
T ss_pred cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeec---
Confidence 5689998888777776666 5555554 2222 234455789999999999999999999999999999999994
Q ss_pred CCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 91 GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 91 g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
+|+||+|...++|..|++.||+..+.|+.+.|..+.
T Consensus 113 ----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 113 ----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred ----ceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 599999999999999999999999999999966544
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.32 E-value=6.8e-12 Score=89.72 Aligned_cols=60 Identities=20% Similarity=0.394 Sum_probs=54.6
Q ss_pred HHHHHHHHh----hcCCeeEEE-EEeCC-C--CCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 67 NWKLHQIFS----KFGDIQSSK-VVVSQ-D--GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 67 e~~L~~~F~----~~G~i~~v~-v~~d~-~--g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
+++|+++|+ .||.|.+|. |+.+. + +.++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999995 77776 5 899999999999999999999999999999999864
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.5e-12 Score=121.42 Aligned_cols=185 Identities=19% Similarity=0.275 Sum_probs=140.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhc-----------CC-eeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhh
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKF-----------GD-IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~-----------G~-i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng 116 (354)
.....+.++|+++|..++++....+|..- |+ +..|++- ..+.++|++|.+.++|..|+. +++
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n-----~~~nfa~ie~~s~~~at~~~~-~~~ 244 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN-----LEKNFAFIEFRSISEATEAMA-LDG 244 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec-----ccccceeEEecCCCchhhhhc-ccc
Confidence 33446899999999999999999999753 33 6666664 447899999999999999996 788
Q ss_pred CccCCeEEEecccccccccccccccc--c-cccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeC
Q 036905 117 ATVEGMELYAPSLRAGRIQESASFNN--L-YVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT 193 (354)
Q Consensus 117 ~~i~g~~i~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~ 193 (354)
..+.|..+.+.-.............. . ...............+.+||++||..++++.++++.+.||.+....++.+
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d 324 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD 324 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc
Confidence 88888877732221111110000000 0 01111111122233478999999999999999999999999999999998
Q ss_pred C-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchh
Q 036905 194 N-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 194 ~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~ 239 (354)
. +|.++||||.+|.+......|++.|||..++++.|.|..|-....
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 8 789999999999999999999999999999999999998865543
No 107
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=6.1e-13 Score=111.32 Aligned_cols=142 Identities=24% Similarity=0.309 Sum_probs=122.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
....++|||.|+...+||+-|.++|-+-|.|..|.|..+.+++.| ||||.|+++-++.-|++.+||..+.++.+.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~--- 81 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR--- 81 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhc---
Confidence 345689999999999999999999999999999999888888888 9999999999999999999999988877653
Q ss_pred cccccccccccccccccCCCchhhhhcCCceEEEeC----CCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q 036905 130 RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKN----INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVC 205 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----l~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~ 205 (354)
+++.++ |+..++++.+.+.|+.-|.+..+++..+.+|..+.++||.
T Consensus 82 ------------------------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~ 131 (267)
T KOG4454|consen 82 ------------------------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVT 131 (267)
T ss_pred ------------------------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchh
Confidence 344455 6778899999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCceeC
Q 036905 206 FSNPDEANRAINTLNGILFH 225 (354)
Q Consensus 206 f~~~~~A~~Ai~~l~g~~i~ 225 (354)
+--.-+.-.++....+....
T Consensus 132 ~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 132 YQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred hhhhhcCcHHhhhhcccCcC
Confidence 87766666777665554433
No 108
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.25 E-value=4.8e-12 Score=108.31 Aligned_cols=173 Identities=20% Similarity=0.370 Sum_probs=131.5
Q ss_pred CCCeEEEcCCCCCCcHHH-H--HHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 52 PTFIPFTVNLASTIDNWK-L--HQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~-L--~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
.....+++++-..+..+- | ...|+.+-.+...+++.+.-+..++++|+.|.....-.++-..-++++++...|+...
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 345677888777666554 4 7888888888888888888888899999999887776666655555555554433111
Q ss_pred ccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeC
Q 036905 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFS 207 (354)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~ 207 (354)
...|.. ..-.++ .+...+||++.|..+++++.|-..|.+|-.....+++++. +|+++||+||.|.
T Consensus 175 --------gtswed----Psl~ew--~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~ 240 (290)
T KOG0226|consen 175 --------GTSWED----PSLAEW--DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFR 240 (290)
T ss_pred --------ccccCC----cccccC--ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeec
Confidence 111111 011111 2223789999999999999999999999999999999998 9999999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 208 ~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
+..++.+|+.+|||+.++.++|++.-+.-++
T Consensus 241 ~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 241 DPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred CHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 9999999999999999999999987655444
No 109
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.24 E-value=1.6e-11 Score=104.04 Aligned_cols=85 Identities=29% Similarity=0.518 Sum_probs=76.8
Q ss_pred ceEEEeCCCCccCHHHHHH----HhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 159 KNLYVKNINDDVDEIELKQ----YFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~----~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
.||||.||++.+..++|+. +|++||.|.+|...+. .+.||-|||.|++.+.|..|+..|+|..+.|++++|.||
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 4999999999999999888 9999999999888765 457999999999999999999999999999999999999
Q ss_pred cCchhhhHHHH
Q 036905 235 QTKRERTSYLR 245 (354)
Q Consensus 235 ~~~~~~~~~~~ 245 (354)
+.+.+...+.+
T Consensus 88 ~s~sdii~~~~ 98 (221)
T KOG4206|consen 88 KSDSDIIAQAP 98 (221)
T ss_pred cCccchhhccC
Confidence 99887665533
No 110
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.3e-11 Score=100.75 Aligned_cols=79 Identities=27% Similarity=0.469 Sum_probs=71.7
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
+++|||+|||.++.+.+|.++|.+||.|..|.+...+. ...||||+|++..+|+.||..-+|..++|.+|+|.|+..-
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 37899999999999999999999999999998876543 3579999999999999999999999999999999999765
Q ss_pred h
Q 036905 238 R 238 (354)
Q Consensus 238 ~ 238 (354)
.
T Consensus 84 r 84 (241)
T KOG0105|consen 84 R 84 (241)
T ss_pred C
Confidence 4
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.22 E-value=3.4e-11 Score=82.06 Aligned_cols=55 Identities=33% Similarity=0.623 Sum_probs=49.4
Q ss_pred HHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 70 L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
|+++|++||+|.++.+..+. +++|||+|.+.++|++|++.|||..+.|+.|.+.|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 78999999999999887653 58999999999999999999999999999998775
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.16 E-value=7.8e-11 Score=113.40 Aligned_cols=75 Identities=25% Similarity=0.396 Sum_probs=68.8
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCe-eEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGII-SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v-~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 233 (354)
+.|-+.|+|++++-+||.+||..|-.+ .+|.+.++.+|...|-|.|.|++.++|.+|...|+++.|..++|++.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 578899999999999999999999765 557777788999999999999999999999999999999999999864
No 113
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.15 E-value=4.2e-11 Score=108.44 Aligned_cols=178 Identities=20% Similarity=0.216 Sum_probs=139.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhC-ccCCeEEEecc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAA-TVEGMELYAPS 128 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~-~i~g~~i~~~~ 128 (354)
....++|++++.+++.+.++..++..+|.+..+.+.... ...++|+++|+|...+.+..|+.. .+. .+.++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCcc
Confidence 357899999999999999999999999988888777766 789999999999999999999974 553 45555444211
Q ss_pred ccccccccccccccccccCCCchhhhhcCCceEE-EeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEe
Q 036905 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLY-VKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCF 206 (354)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f 206 (354)
..... ....+..... ......++| |++++..+++++|+.+|..+|.|..+++..+. ++..+|||+|.|
T Consensus 165 ~~~~~---------~~~~n~~~~~-~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~ 234 (285)
T KOG4210|consen 165 NTRRG---------LRPKNKLSRL-SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDF 234 (285)
T ss_pred ccccc---------ccccchhccc-ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhh
Confidence 11100 0001100011 112224555 99999999999999999999999999999888 899999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeccCchhh
Q 036905 207 SNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240 (354)
Q Consensus 207 ~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~ 240 (354)
.+...+..++.. ....+.++++.+.+..+...+
T Consensus 235 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 235 SAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 999999999987 889999999999998876543
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.9e-11 Score=106.03 Aligned_cols=81 Identities=23% Similarity=0.429 Sum_probs=77.8
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
+.|||..|..-+|+++|.-+|+.||.|.+|.|++|. +|.+-.||||+|++.+++++|.-+|++..|++++|+|.|++.-
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSV 319 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSV 319 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhh
Confidence 889999999999999999999999999999999998 9999999999999999999999999999999999999999866
Q ss_pred hh
Q 036905 238 RE 239 (354)
Q Consensus 238 ~~ 239 (354)
..
T Consensus 320 sk 321 (479)
T KOG0415|consen 320 SK 321 (479)
T ss_pred hh
Confidence 44
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=2.5e-12 Score=126.48 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=131.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
...++||+||+..+.+.+|...|..+|.+..+++.... +++.+|+|||.|...+++.+||....++.++ +
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-K-------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-K-------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-h--------
Confidence 34689999999999999999999999999888877444 7889999999999999999999864444332 1
Q ss_pred ccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHH
Q 036905 131 AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPD 210 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~ 210 (354)
..++|.|.|+.-|.++|+.+++.+|.++++.++....|+++|.++|.|.++.
T Consensus 737 ----------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea 788 (881)
T KOG0128|consen 737 ----------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEA 788 (881)
T ss_pred ----------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcc
Confidence 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 211 EANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 211 ~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
++.+++...++..+..+.+.|..+.+
T Consensus 789 ~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 789 DASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999888888888888766
No 116
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.14 E-value=1.5e-10 Score=96.57 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=78.5
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhc-CCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKF-GDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i 124 (354)
.........++|+.+|.-+.+.++..+|.+| |.|..+++.++. ||.|||||||+|++.+.|+=|-+.||+..+.++-|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 4455667899999999999999999999998 778888887888 99999999999999999999999999999999999
Q ss_pred Eecccccc
Q 036905 125 YAPSLRAG 132 (354)
Q Consensus 125 ~~~~~~~~ 132 (354)
.|++++.+
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99988876
No 117
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.5e-11 Score=104.74 Aligned_cols=84 Identities=24% Similarity=0.400 Sum_probs=78.2
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+...|||-.|.+-+|.+||.-+|+.||.|.+|.|++|. ||.+..||||+|++.+++++|.-+|++..|.++.|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 445667899999999999999999999999999999999999 9999999999999999999999999999999999997
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
-|+..
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 76543
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.11 E-value=1.5e-09 Score=106.02 Aligned_cols=78 Identities=24% Similarity=0.461 Sum_probs=73.5
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
+||||++|+..+++.+|.++|+.||.|.+|.+... +|+|||++.+..+|.+|+.+|+...+.++.|+|.||..+.
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 89999999999999999999999999999999875 8999999999999999999999999999999999998766
Q ss_pred hhh
Q 036905 239 ERT 241 (354)
Q Consensus 239 ~~~ 241 (354)
.+.
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 554
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=3.3e-10 Score=94.55 Aligned_cols=82 Identities=28% Similarity=0.474 Sum_probs=75.5
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcC-CCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQC-GIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~-G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 233 (354)
.....+||..+|..+.+.++..+|.+| |.|..+++.++. +|.|||||||+|++++.|.-|.+.||+..+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 334678999999999999999999998 788888887877 999999999999999999999999999999999999999
Q ss_pred ccCc
Q 036905 234 AQTK 237 (354)
Q Consensus 234 a~~~ 237 (354)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8877
No 120
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.07 E-value=2e-10 Score=104.42 Aligned_cols=116 Identities=14% Similarity=0.219 Sum_probs=90.0
Q ss_pred CCCccceeEEEecCchhhHHHH-----HHhcccccccccc-ccC------CCCCCeEEEcCCCCCCcHHHHHHHHhhcCC
Q 036905 12 DSAILGTPFSLYVGDLDSTDLL-----RLCSALIASIDVH-SAM------ATPTFIPFTVNLASTIDNWKLHQIFSKFGD 79 (354)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~------~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 79 (354)
.+.++|++|+.|..+......+ .++.+.+...... +.. ...+.+|||++||.++++++++++|++||.
T Consensus 44 t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~ 123 (311)
T KOG4205|consen 44 TGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGK 123 (311)
T ss_pred CCCcccccceecCCCcchheeecccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccce
Confidence 4888999999999765554332 2333333311111 111 112559999999999999999999999999
Q ss_pred eeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 80 IQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 80 i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
|..+.++.|. +.+++||+||.|.+++++++++. ...+.|+++.+.|+.
T Consensus 124 v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 124 VADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKR 172 (311)
T ss_pred eEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEee
Confidence 9999999999 89999999999999999999996 578889999999543
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=4.6e-10 Score=100.34 Aligned_cols=77 Identities=29% Similarity=0.480 Sum_probs=69.2
Q ss_pred hcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh-CCceeCCeeEEEEe
Q 036905 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL-NGILFHQKPLYVAI 233 (354)
Q Consensus 155 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l-~g~~i~g~~l~v~~ 233 (354)
+....+|||++|.+.+++.+|+++|.+||+|.++.+... +++|||+|.+.++|+.|..++ |...|+|.+|+|.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 334489999999999999999999999999999999985 679999999999999988755 65678999999999
Q ss_pred ccC
Q 036905 234 AQT 236 (354)
Q Consensus 234 a~~ 236 (354)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 988
No 122
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=3.8e-10 Score=106.76 Aligned_cols=182 Identities=18% Similarity=0.204 Sum_probs=123.5
Q ss_pred cccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeE
Q 036905 44 DVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123 (354)
Q Consensus 44 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~ 123 (354)
+..+....++++|+|-|||.++++++|+.+|+.||+|.+|+.-. ..+|..||+|-+..+|+.|++.|++..+.|+.
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~ 141 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----NKRGIVFVEFYDVRDAERALKALNRREIAGKR 141 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhh
Confidence 33445567789999999999999999999999999999865543 45789999999999999999999999999999
Q ss_pred EEeccccccc--cccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeE
Q 036905 124 LYAPSLRAGR--IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGF 201 (354)
Q Consensus 124 i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~ 201 (354)
+......... ......+-+.+...+.......-....++.- |+...+..-++..|..+|.+.. +-. +.-+..
T Consensus 142 ~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~----~~~~hq 215 (549)
T KOG4660|consen 142 IKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RET----PLLNHQ 215 (549)
T ss_pred hcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccc----cchhhh
Confidence 8832222211 1111111111111111111111112334433 8888888777777888887765 222 112225
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 202 GFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 202 afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
-|+.|.+..++..+...+ |+.+.+....+.++..
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 688888888887776654 7888888888888876
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=3.7e-10 Score=111.88 Aligned_cols=165 Identities=14% Similarity=0.153 Sum_probs=136.1
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
..+...+++||++||+..+++.+|+..|..+|.|.+|.|-+..-+.-..||||.|.+...+-+|+..+.+..|..-.+.+
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 34556689999999999999999999999999999999887765666779999999999999999888777665443321
Q ss_pred ccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEe
Q 036905 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCF 206 (354)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f 206 (354)
..-. . .....+.+++++|..++....|...|..||.|..|.+-.. .-|++|.|
T Consensus 446 glG~-----------------~-----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~y 498 (975)
T KOG0112|consen 446 GLGQ-----------------P-----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQY 498 (975)
T ss_pred cccc-----------------c-----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----Ccceeeec
Confidence 1100 0 1122368999999999999999999999999998877654 34999999
Q ss_pred CCHHHHHHHHHHhCCceeCC--eeEEEEeccCch
Q 036905 207 SNPDEANRAINTLNGILFHQ--KPLYVAIAQTKR 238 (354)
Q Consensus 207 ~~~~~A~~Ai~~l~g~~i~g--~~l~v~~a~~~~ 238 (354)
++...|..|+..|-|..|+| +++.|.|+...-
T Consensus 499 es~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 499 ESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred ccCccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 99999999999999999986 889999997654
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.96 E-value=3.7e-09 Score=95.59 Aligned_cols=180 Identities=12% Similarity=0.130 Sum_probs=124.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeE-EEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQS-SKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...+..+..++|||.-++.+|..+|...--..- +-+.....|+..|.|.|.|.+.|.-+.|++. +.+.++++.|.+.-
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 344567888999999999999999985421111 1123333688889999999999999999986 67778888887543
Q ss_pred ccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcC----CCeeEEEEeeCCCCCeeeEEEE
Q 036905 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQC----GIISSVKIMRTNRGISKGFGFV 204 (354)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~----G~v~~v~i~~~~~g~~kg~afV 204 (354)
...+.--.....+.. .............|.+++||++.++.++.++|..- |.++.|-+++..+|+..|-|||
T Consensus 136 a~ge~f~~iagg~s~----e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFv 211 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSN----EAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFV 211 (508)
T ss_pred cCchhheEecCCccc----cCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEE
Confidence 333221111111111 01111111222578899999999999999999632 3567788888889999999999
Q ss_pred EeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 205 CFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 205 ~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
.|..+++|+.|+.+ |...|+-|.|.+--+.
T Consensus 212 lfa~ee~aq~aL~k-hrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 212 LFACEEDAQFALRK-HRQNIGQRYIELFRST 241 (508)
T ss_pred EecCHHHHHHHHHH-HHHHHhHHHHHHHHHh
Confidence 99999999999986 5556666666554433
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=3.3e-09 Score=94.97 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=71.5
Q ss_pred ccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHh-hhCccCCeE
Q 036905 45 VHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-YAATVEGME 123 (354)
Q Consensus 45 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~l-ng~~i~g~~ 123 (354)
..........+|||++|-..++|.+|+++|.+||+|.++.+... +++|||+|.+.++|+.|..++ |...|+|++
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 44556667889999999889999999999999999999998865 679999999999999999765 555689999
Q ss_pred EEeccccc
Q 036905 124 LYAPSLRA 131 (354)
Q Consensus 124 i~~~~~~~ 131 (354)
|.+.|.+.
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99888776
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.93 E-value=3.2e-09 Score=100.39 Aligned_cols=85 Identities=27% Similarity=0.372 Sum_probs=75.9
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.......++|||.+|...+...||+++|++||.|+-.+|+++. +.-.+.||||++.+.++|.+||..|+...|.|+.|.
T Consensus 399 kgrs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 399 KGRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred ccccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 3445667899999999999999999999999999999999987 666789999999999999999999999999999998
Q ss_pred eccccc
Q 036905 126 APSLRA 131 (354)
Q Consensus 126 ~~~~~~ 131 (354)
|...+.
T Consensus 479 VEkaKN 484 (940)
T KOG4661|consen 479 VEKAKN 484 (940)
T ss_pred eeeccc
Confidence 765543
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.93 E-value=1.3e-09 Score=93.57 Aligned_cols=122 Identities=20% Similarity=0.280 Sum_probs=92.5
Q ss_pred eeeeccCCCCccceeEEEecCchhhHHHHHHh-ccccccc--cc----------cccCCCCCCeEEEcCCCCCCcHHHHH
Q 036905 5 LRALNNNDSAILGTPFSLYVGDLDSTDLLRLC-SALIASI--DV----------HSAMATPTFIPFTVNLASTIDNWKLH 71 (354)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~----------~~~~~~~~~~lfV~nLp~~~te~~L~ 71 (354)
+.+.+...+...+.++..+..+.......... .+.+++- .. -....+.+.+||++.|..+++++-|.
T Consensus 129 tk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~ 208 (290)
T KOG0226|consen 129 TKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLA 208 (290)
T ss_pred hhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHH
Confidence 44566666777777776655443333221111 1222211 11 12444567899999999999999999
Q ss_pred HHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 72 QIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 72 ~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
..|.+|-.-...++++|+ +|+++||+||.|.+..++..|++.+||..++.+.|..
T Consensus 209 raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 209 RAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred HHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 999999999999999999 9999999999999999999999999999999998873
No 128
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.85 E-value=8.4e-09 Score=90.31 Aligned_cols=82 Identities=26% Similarity=0.451 Sum_probs=77.4
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
..+|+|.||+..+++++|+++|..||.+..+.+..++.|.+.|.|-|.|+..++|.+|+..+||..++|++|++....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred hh
Q 036905 238 RE 239 (354)
Q Consensus 238 ~~ 239 (354)
..
T Consensus 163 ~~ 164 (243)
T KOG0533|consen 163 SQ 164 (243)
T ss_pred cc
Confidence 44
No 129
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.84 E-value=1.1e-08 Score=89.56 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
......+|+|.|||..++++||+++|..||.+..+-|.+++.|.+.|.|=|.|...++|..|++.+||..+.|+.+.+..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 44455789999999999999999999999999999999999999999999999999999999999999999999988554
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
+..
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 443
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.83 E-value=8e-09 Score=97.74 Aligned_cols=79 Identities=25% Similarity=0.462 Sum_probs=73.0
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
++|+|.+|...+...+|+.+|++||.|+..+|+.+. +--.++|+||++++.++|.+||+.||...|+|+.|.|.-++..
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 899999999999999999999999999999999876 4445899999999999999999999999999999999988743
No 131
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.72 E-value=4.6e-08 Score=87.66 Aligned_cols=79 Identities=30% Similarity=0.493 Sum_probs=74.0
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeE--------EEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISS--------VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 228 (354)
....|||.|||.++|.+++.++|+.||.|.. |++.++..|..||-|.++|--.++..-|+..|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 3367999999999999999999999998865 89999999999999999999999999999999999999999
Q ss_pred EEEEecc
Q 036905 229 LYVAIAQ 235 (354)
Q Consensus 229 l~v~~a~ 235 (354)
|+|..|+
T Consensus 213 ~rVerAk 219 (382)
T KOG1548|consen 213 LRVERAK 219 (382)
T ss_pred EEEehhh
Confidence 9999884
No 132
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.68 E-value=1.7e-07 Score=70.48 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=68.9
Q ss_pred ceEEEeCCCCccCHHHHHHHhhc--CCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeC----CeeEEE
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQ--CGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFH----QKPLYV 231 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~--~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~----g~~l~v 231 (354)
+||.|+|||...|.++|.+++.. .|...-+.++.|. ++.+.|||||.|.+++.|.+..+.++|+.+. .|...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998864 3677778888887 7788999999999999999999999999875 578899
Q ss_pred EeccCc
Q 036905 232 AIAQTK 237 (354)
Q Consensus 232 ~~a~~~ 237 (354)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 998654
No 133
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.68 E-value=2.4e-07 Score=83.10 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=67.9
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCC--CeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCG--IISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G--~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 232 (354)
...-++||+||-|++|++||.+.+...| .+.+++++.++ +|+|||||+|...+..+.++.++.|-.+.|+|..-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3346899999999999999999988777 56778888887 99999999999999999999999999999999765554
Q ss_pred ec
Q 036905 233 IA 234 (354)
Q Consensus 233 ~a 234 (354)
-.
T Consensus 158 ~~ 159 (498)
T KOG4849|consen 158 SY 159 (498)
T ss_pred cc
Confidence 33
No 134
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.62 E-value=1.7e-07 Score=79.23 Aligned_cols=84 Identities=25% Similarity=0.421 Sum_probs=71.9
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCC--CeeeEEEEEeCCHHHHHHHHHHhCCceeC---CeeEEEE
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRG--ISKGFGFVCFSNPDEANRAINTLNGILFH---QKPLYVA 232 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g--~~kg~afV~f~~~~~A~~Ai~~l~g~~i~---g~~l~v~ 232 (354)
-+||||.+||.++...+|..+|..|-..+.+.+.....+ ..+-+|||+|.+..+|..|+.+|||..|+ +..|++.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 389999999999999999999999987787777655422 24569999999999999999999999996 7899999
Q ss_pred eccCchhhh
Q 036905 233 IAQTKRERT 241 (354)
Q Consensus 233 ~a~~~~~~~ 241 (354)
+|+....++
T Consensus 114 lAKSNtK~k 122 (284)
T KOG1457|consen 114 LAKSNTKRK 122 (284)
T ss_pred ehhcCcccc
Confidence 998766543
No 135
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=1.4e-08 Score=85.46 Aligned_cols=78 Identities=24% Similarity=0.273 Sum_probs=73.5
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
++|||.|+...++++.|.++|-+-|.|..|.|..+.++..| ||||.|+++.+..-|++.|||..+.++.+.|++-...
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 79999999999999999999999999999999999988888 9999999999999999999999999999999876544
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.61 E-value=7.9e-08 Score=93.13 Aligned_cols=183 Identities=13% Similarity=0.068 Sum_probs=129.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
..++.+-+++.+.+.++.|++++|... .|.+..|..+. .+...|-++|.|....++++|++. |....-+|.+.+-..
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCC
Confidence 446778888999999999999999753 35566666666 444478999999999999999985 556666666663322
Q ss_pred cc-cccc--ccccc-c-cccccCC------Cc--------hhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeE-EE
Q 036905 130 RA-GRIQ--ESASF-N-NLYVKNL------DD--------DVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISS-VK 189 (354)
Q Consensus 130 ~~-~~~~--~~~~~-~-~~~~~~~------~~--------~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~-v~ 189 (354)
.. ++.. ..... . .....+. +. .........+|||..||..+++.++.++|...-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 22 1100 00000 0 0000000 00 0011223378999999999999999999988777776 88
Q ss_pred EeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 190 IMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 190 i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
|-+.++++.++-|||.|.+++++.+|...-+.+.++-+-|+|.-..
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 8888899999999999999999999988667777888888988543
No 137
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=98.61 E-value=1.1e-08 Score=69.88 Aligned_cols=26 Identities=38% Similarity=0.728 Sum_probs=24.5
Q ss_pred CHHHHHHhhhcccccccccccCCCCC
Q 036905 328 SPDERKDILGQGLYPLVKKLKVNFDS 353 (354)
Q Consensus 328 ~~~~q~~~lg~~l~~~v~~~~~~~~~ 353 (354)
+|++||+||||+|||+|++++|++|.
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~ 26 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAG 26 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCC
Confidence 68999999999999999999999984
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.60 E-value=2.9e-07 Score=69.27 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=60.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhh--cCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccC
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSK--FGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVE 120 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~--~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~ 120 (354)
++|+|+|+|...|.++|.+++.. .|...-+.+..|. ++.+.|||||.|.+.++|.+..+.++|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 68999999999999999999985 4677888888898 8889999999999999999999999998765
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.59 E-value=8.9e-08 Score=90.55 Aligned_cols=75 Identities=27% Similarity=0.457 Sum_probs=65.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...|||+|||.+++.++|+++|..||.|....|.... .++...||||+|++.++++.||.. +-..++++++.++-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 3459999999999999999999999999988887765 555559999999999999999985 57778899888654
No 140
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.58 E-value=5.9e-09 Score=95.42 Aligned_cols=154 Identities=21% Similarity=0.273 Sum_probs=118.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCc-cCCeEEEecccccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT-VEGMELYAPSLRAG 132 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~-i~g~~i~~~~~~~~ 132 (354)
.++||+||.+..+.+||..+|...---.+-.++. ..||+||.+.+...|.+|++.++|+. +.|+.+.+...-..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 3689999999999999999997541111111221 25899999999999999999999865 77887775543321
Q ss_pred ccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHH
Q 036905 133 RIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEA 212 (354)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A 212 (354)
+ ..++.+-|+|+|....++.|..+...||.|..|....... ..-..-|+|.+.+.+
T Consensus 77 k----------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~ 132 (584)
T KOG2193|consen 77 K----------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQH 132 (584)
T ss_pred H----------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHH
Confidence 1 1225688999999999999999999999999986644321 122345789999999
Q ss_pred HHHHHHhCCceeCCeeEEEEeccC
Q 036905 213 NRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 213 ~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..||..|+|..+....++|.|-..
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCch
Confidence 999999999999999999998653
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.56 E-value=1e-07 Score=83.79 Aligned_cols=79 Identities=27% Similarity=0.443 Sum_probs=74.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
...+||+|++..+|.+++..+|+.||.|..+.|..++ .|.+|||+||+|.+.+.+..|+. |||..|.|+.+.|.+.+.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 3789999999999999999999999999999999998 77899999999999999999999 999999999999998876
Q ss_pred c
Q 036905 237 K 237 (354)
Q Consensus 237 ~ 237 (354)
.
T Consensus 180 ~ 180 (231)
T KOG4209|consen 180 N 180 (231)
T ss_pred e
Confidence 5
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.53 E-value=1e-07 Score=83.74 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=75.7
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
........+||+|++..+|.+++...|+.||.|..+.|..|. +|.+|||+||+|.+.+.++.++. |||..|.++.+.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 455667899999999999999999999999999999999999 78899999999999999999998 9999999999986
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+.+.
T Consensus 175 t~~r~ 179 (231)
T KOG4209|consen 175 TLKRT 179 (231)
T ss_pred eeeee
Confidence 65544
No 143
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.53 E-value=1.9e-07 Score=88.36 Aligned_cols=79 Identities=28% Similarity=0.374 Sum_probs=69.0
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.+|||+|||.+++.++|+++|..||.|+...|.... .++..+||||+|.+.+++..||.+ +-..|++++|.|.-.+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 569999999999999999999999999998887655 555559999999999999999996 577899999999976654
Q ss_pred h
Q 036905 238 R 238 (354)
Q Consensus 238 ~ 238 (354)
-
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.52 E-value=3.9e-07 Score=65.34 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=48.2
Q ss_pred CeEEEcCCCCCCcHHHHHH----HHhhcC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 54 FIPFTVNLASTIDNWKLHQ----IFSKFG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~----~F~~~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
..|+|.|||.+.+-..|+. ++.-+| .|.+| +.+-|+|.|.+.+.|++|.+.|+|..+.|++|.+.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4699999999999876555 555665 56654 146799999999999999999999999999999999
Q ss_pred ccccc
Q 036905 129 LRAGR 133 (354)
Q Consensus 129 ~~~~~ 133 (354)
.+..+
T Consensus 74 ~~~~r 78 (90)
T PF11608_consen 74 SPKNR 78 (90)
T ss_dssp S--S-
T ss_pred cCCcc
Confidence 87755
No 145
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=98.50 E-value=1.4e-08 Score=71.86 Aligned_cols=34 Identities=44% Similarity=0.714 Sum_probs=31.7
Q ss_pred cchhhhhcCCHHHHHHhhhcccccccccccCCCC
Q 036905 319 ANNSMLAVASPDERKDILGQGLYPLVKKLKVNFD 352 (354)
Q Consensus 319 ~~~~~l~~~~~~~q~~~lg~~l~~~v~~~~~~~~ 352 (354)
.+++.|+++++++||++|||+|||+|..++|++|
T Consensus 3 ~~~~~la~~~~~~qk~~LGe~Ly~~V~~~~p~~A 36 (72)
T PF00658_consen 3 LTASALASASPEQQKQILGERLYPLVQAIYPELA 36 (72)
T ss_dssp TSHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chHHHHhcCCHHHHHHHHhccccHHHHHhCcchh
Confidence 5688999999999999999999999999999876
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=1.3e-07 Score=89.88 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=64.8
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 230 (354)
....+|+|-|||..+++++|+.+|+.||+|..|+.-.. .+|.+||+|.|..+|++|+++|++..|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34489999999999999999999999999999766555 468899999999999999999999999999998
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.41 E-value=3.5e-07 Score=88.97 Aligned_cols=81 Identities=23% Similarity=0.334 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCC----CCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD----GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~----g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
..+++|||+||++.++++.|...|..||.|.+++|+..++ .+.+-||||.|.+..+|++|++.|+|..+.+..+..
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 4478999999999999999999999999999999999763 345689999999999999999999999999988886
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
-|.+.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 66543
No 148
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=2.6e-07 Score=79.27 Aligned_cols=73 Identities=29% Similarity=0.555 Sum_probs=67.3
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
..+||++|++.+.+.+|..+|..||.|..+.+.. ||+||+|.+..+|..|+..||++.|.|..+.|.|+..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 3689999999999999999999999999998875 599999999999999999999999999889999988653
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.40 E-value=1.5e-06 Score=62.38 Aligned_cols=71 Identities=28% Similarity=0.428 Sum_probs=48.8
Q ss_pred ceEEEeCCCCccCHH----HHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 036905 159 KNLYVKNINDDVDEI----ELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~----~L~~~F~~~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 233 (354)
..|+|.|||.+.+.. .|++++..|| .|.+|. .+.|+|.|.+.+.|.+|...|+|..+.|++|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 468999999988765 4677888887 555542 25799999999999999999999999999999999
Q ss_pred ccCch
Q 036905 234 AQTKR 238 (354)
Q Consensus 234 a~~~~ 238 (354)
.....
T Consensus 74 ~~~~r 78 (90)
T PF11608_consen 74 SPKNR 78 (90)
T ss_dssp S--S-
T ss_pred cCCcc
Confidence 85443
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.36 E-value=6.9e-07 Score=87.02 Aligned_cols=81 Identities=35% Similarity=0.512 Sum_probs=73.1
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCC----CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR----GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~----g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 232 (354)
..++|||+||+..++++.|...|..||.|.+++|+..++ ...+-+|||.|-+..+|++|+..|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 348999999999999999999999999999999987642 3346799999999999999999999999999999999
Q ss_pred eccCc
Q 036905 233 IAQTK 237 (354)
Q Consensus 233 ~a~~~ 237 (354)
|++.-
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 98754
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.36 E-value=2.8e-07 Score=83.93 Aligned_cols=169 Identities=13% Similarity=0.108 Sum_probs=119.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-C---CCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-D---GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~---g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...|.|.||.+++|.+.++.+|...|.|.+++|+... + ......|||.|.+...+..|-. |.+..+-++.|.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 3489999999999999999999999999999998754 1 3456789999999998888874 777777777777433
Q ss_pred ccccc-ccc----ccccccccc----------------------------cCCCchhhh---hcCCceEEEeCCCCccCH
Q 036905 129 LRAGR-IQE----SASFNNLYV----------------------------KNLDDDVTE---EILDKNLYVKNINDDVDE 172 (354)
Q Consensus 129 ~~~~~-~~~----~~~~~~~~~----------------------------~~~~~~~~~---~~~~~~l~v~nl~~~~t~ 172 (354)
..... ... .....+... ..++..... ++...+++|.+|...+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 33211 000 000000000 011111111 112278999999999999
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 036905 173 IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226 (354)
Q Consensus 173 ~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g 226 (354)
.++.+.|..+|+|....+..... .-+|-|.|........|+. ++|..+.=
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~---s~~c~~sf~~qts~~halr-~~gre~k~ 215 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSR---SSSCSHSFRKQTSSKHALR-SHGRERKR 215 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCC---CcchhhhHhhhhhHHHHHH-hcchhhhh
Confidence 99999999999998887765432 3478899998888888887 57877653
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.15 E-value=6e-06 Score=63.55 Aligned_cols=78 Identities=22% Similarity=0.391 Sum_probs=49.7
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC-----CceeCCeeEEEEe
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN-----GILFHQKPLYVAI 233 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~-----g~~i~g~~l~v~~ 233 (354)
+.|+|.+++..++.++|++.|+.||.|..|.+.+..+ .|+|.|.+.++|.+|+..+. +..|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 4688999999999999999999999999999887643 69999999999999998763 3477888888887
Q ss_pred ccCchhhh
Q 036905 234 AQTKRERT 241 (354)
Q Consensus 234 a~~~~~~~ 241 (354)
-.-.++..
T Consensus 77 LeGeeE~~ 84 (105)
T PF08777_consen 77 LEGEEEEE 84 (105)
T ss_dssp --HHHHHH
T ss_pred CCCHHHHH
Confidence 76555443
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.04 E-value=3.6e-06 Score=76.39 Aligned_cols=81 Identities=28% Similarity=0.489 Sum_probs=74.0
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeE--------EEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISS--------VKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--------v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 229 (354)
.+|||-+|+..+++++|.++|.++|.|.. |.|.++. ++.+||-|.|.|++...|+.|+.-++++.+.+.+|
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~i 146 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTI 146 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCc
Confidence 78999999999999999999999998754 6677776 89999999999999999999999999999999999
Q ss_pred EEEeccCchh
Q 036905 230 YVAIAQTKRE 239 (354)
Q Consensus 230 ~v~~a~~~~~ 239 (354)
+|.+|..+..
T Consensus 147 kvs~a~~r~~ 156 (351)
T KOG1995|consen 147 KVSLAERRTG 156 (351)
T ss_pred hhhhhhhccC
Confidence 9999987654
No 154
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.96 E-value=7.4e-06 Score=70.92 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=63.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-C--------CCce----eEEEEEeecHHHHHHHHHHhhhCc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-D--------GKSK----GYGFVQYSTQESALNAIEKLYAAT 118 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~--------g~sk----g~aFV~F~~~e~A~~Ai~~lng~~ 118 (354)
.+..||++++|+.++-.-|+++|+.||.|-.|.+.... + |.++ .-|+|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 67899999999999999999999999999999887765 4 2332 238899999999999999999999
Q ss_pred cCCeEE
Q 036905 119 VEGMEL 124 (354)
Q Consensus 119 i~g~~i 124 (354)
|+|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 999853
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.87 E-value=3.3e-05 Score=69.35 Aligned_cols=79 Identities=25% Similarity=0.431 Sum_probs=64.0
Q ss_pred ceEEEeCCCCccCHHH----H--HHHhhcCCCeeEEEEeeCC-CCC-eeeE--EEEEeCCHHHHHHHHHHhCCceeCCee
Q 036905 159 KNLYVKNINDDVDEIE----L--KQYFSQCGIISSVKIMRTN-RGI-SKGF--GFVCFSNPDEANRAINTLNGILFHQKP 228 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~----L--~~~F~~~G~v~~v~i~~~~-~g~-~kg~--afV~f~~~~~A~~Ai~~l~g~~i~g~~ 228 (354)
+-+||-+|+..+..|+ | .++|.+||.|..|.|-+.. ... ..+. .||+|.+.|+|.+||.+.+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 5689999999887766 2 3789999999999887653 111 1222 399999999999999999999999999
Q ss_pred EEEEeccCc
Q 036905 229 LYVAIAQTK 237 (354)
Q Consensus 229 l~v~~a~~~ 237 (354)
|+..|...|
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999998755
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.79 E-value=6.9e-05 Score=57.66 Aligned_cols=59 Identities=27% Similarity=0.389 Sum_probs=39.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhC
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA 117 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~ 117 (354)
..|+|.+++..++.++|++.|+.||.|.-|.+... ..-|||.|.+.++|++|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHHhc
Confidence 46889999999999999999999999988777543 347999999999999999987655
No 157
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.73 E-value=1.4e-06 Score=86.68 Aligned_cols=168 Identities=17% Similarity=0.140 Sum_probs=117.2
Q ss_pred CCeEEEcCCCCCCcHH-HHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 53 TFIPFTVNLASTIDNW-KLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~-~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
.....+.|+.+..... ..+..|..+|.|+.+++.... .-...-++++.+....+++.|.. ..+.-+.++...+-...
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCC
Confidence 4567777887776666 678899999999998887643 22223389999999999999986 46666666665532222
Q ss_pred ccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEe-eCCCCCeeeEEEEEeCCH
Q 036905 131 AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIM-RTNRGISKGFGFVCFSNP 209 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~-~~~~g~~kg~afV~f~~~ 209 (354)
......... ....+.....++||+||+....+++|...|..+|.+..+.+. ....+..||+|+|.|.++
T Consensus 650 ~~~~~~~~k----------vs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~ 719 (881)
T KOG0128|consen 650 AEEKEENFK----------VSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKP 719 (881)
T ss_pred chhhhhccC----------cCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecC
Confidence 211000000 001111222689999999999999999999999998888776 334778899999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEE
Q 036905 210 DEANRAINTLNGILFHQKPLYV 231 (354)
Q Consensus 210 ~~A~~Ai~~l~g~~i~g~~l~v 231 (354)
+++.+|+....+..++...+.|
T Consensus 720 ~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 720 EHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred Cchhhhhhhhhhhhhhhhhhhe
Confidence 9999999865555554333333
No 158
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.70 E-value=8.7e-05 Score=64.45 Aligned_cols=89 Identities=24% Similarity=0.201 Sum_probs=78.6
Q ss_pred HHHHHHHHhhhCccCCeEEEeccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCe
Q 036905 106 SALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGII 185 (354)
Q Consensus 106 ~A~~Ai~~lng~~i~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v 185 (354)
-|+.|-..|++....++.+.+.|... ..|||.||...++-|.|.+.|+.||.|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------a~l~V~nl~~~~sndll~~~f~~fg~~ 58 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------------AELYVVNLMQGASNDLLEQAFRRFGPI 58 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------------ceEEEEecchhhhhHHHHHhhhhcCcc
Confidence 45666677899999999999887553 579999999999999999999999999
Q ss_pred eEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 036905 186 SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG 221 (354)
Q Consensus 186 ~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g 221 (354)
....+..|..++..+-++|.|...-.|.+|+..++-
T Consensus 59 e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 59 ERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred chheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 999999998888899999999999999999987743
No 159
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.64 E-value=3.9e-05 Score=69.15 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=67.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcC--CeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFG--DIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.......+||+||-|++|++||.+.+...| .+.++|+..++ +|.|||||+|...+..+.++.++.|-.+.|.|+.-.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 344467899999999999999999998877 47888999888 899999999999999999999998888888877554
Q ss_pred e
Q 036905 126 A 126 (354)
Q Consensus 126 ~ 126 (354)
|
T Consensus 156 V 156 (498)
T KOG4849|consen 156 V 156 (498)
T ss_pred e
Confidence 3
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.61 E-value=0.00017 Score=48.12 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=42.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHH
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAI 111 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai 111 (354)
+.|-|.+.+.+..+ +++..|..||+|..+.+- ....+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 57889999877665 455699999999988775 23568999999999999985
No 161
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.0002 Score=68.59 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCc------HHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCC-e
Q 036905 50 ATPTFIPFTVNLASTID------NWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG-M 122 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~t------e~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g-~ 122 (354)
..-...|+|-|.|---. ...|..+|+++|+|....+..+..|.++||.|++|.+..+|+.|++.|||+.+.- +
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 35567999999985322 2357789999999999888888877799999999999999999999999998764 4
Q ss_pred EEEecccc
Q 036905 123 ELYAPSLR 130 (354)
Q Consensus 123 ~i~~~~~~ 130 (354)
...++...
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 44444433
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.54 E-value=9.8e-05 Score=67.20 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCee--------EEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccC
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQ--------SSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVE 120 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~ 120 (354)
.....+|||-+||..+++.+|.++|.++|.|. .|+|.+|+ |++.||-|.|.|++...|+.||.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34456899999999999999999999999885 47788888 9999999999999999999999999999999
Q ss_pred CeEEEeccccc
Q 036905 121 GMELYAPSLRA 131 (354)
Q Consensus 121 g~~i~~~~~~~ 131 (354)
+..|.+..+.+
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 98887655443
No 163
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.51 E-value=6.1e-05 Score=68.55 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=87.6
Q ss_pred cCCCCccceeEEEecCchhhHHHHHHhcc-cc------cccccc----------ccCCCCCCeEE-EcCCCCCCcHHHHH
Q 036905 10 NNDSAILGTPFSLYVGDLDSTDLLRLCSA-LI------ASIDVH----------SAMATPTFIPF-TVNLASTIDNWKLH 71 (354)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~----------~~~~~~~~~lf-V~nLp~~~te~~L~ 71 (354)
.....+.|++...|.+......++..... .+ ..+.-. ........++| |++|+.++++++|+
T Consensus 124 ~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~ 203 (285)
T KOG4210|consen 124 EDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLK 203 (285)
T ss_pred ccccccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHh
Confidence 44566777888888776666544433332 11 011100 12223345566 99999999999999
Q ss_pred HHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 72 QIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 72 ~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
..|..+|.|..+++..+. ++..+|||||.|.+...+..++.. ....+.++.+.+....
T Consensus 204 ~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 204 EHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred hhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 999999999999999998 999999999999999999999976 6777888877754443
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00041 Score=66.54 Aligned_cols=78 Identities=23% Similarity=0.349 Sum_probs=64.9
Q ss_pred CCceEEEeCCCCccC------HHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC-CeeE
Q 036905 157 LDKNLYVKNINDDVD------EIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH-QKPL 229 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t------~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~-g~~l 229 (354)
....|+|.|+|---. ..-|..+|+++|.|....++.+..|..+||.|++|.+..+|..|+..|||+.|+ .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 337899999985322 234668899999999999999997779999999999999999999999999886 6777
Q ss_pred EEEec
Q 036905 230 YVAIA 234 (354)
Q Consensus 230 ~v~~a 234 (354)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 77643
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.46 E-value=0.00039 Score=61.52 Aligned_cols=73 Identities=22% Similarity=0.192 Sum_probs=58.8
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCC--eeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchhhhHHH
Q 036905 172 EIELKQYFSQCGIISSVKIMRTNRGI--SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYL 244 (354)
Q Consensus 172 ~~~L~~~F~~~G~v~~v~i~~~~~g~--~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~~~~ 244 (354)
++++.+.+++||.|..|.|...++.. .---.||+|+..++|.+|+-.|||+.|+||.+...|-.-.+.+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~~el 374 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSNLEL 374 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhhhhhh
Confidence 46788999999999999988765211 11247999999999999999999999999999999987666554433
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.43 E-value=8.9e-05 Score=64.36 Aligned_cols=70 Identities=26% Similarity=0.328 Sum_probs=60.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-C--------CCeee----EEEEEeCCHHHHHHHHHHhCCceeC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-R--------GISKG----FGFVCFSNPDEANRAINTLNGILFH 225 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~--------g~~kg----~afV~f~~~~~A~~Ai~~l~g~~i~ 225 (354)
-.||+.+||...+...|+++|+.||.|-.|.+.... . |..++ -|+|+|.+...|.++...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 579999999999999999999999999999987654 2 22222 3789999999999999999999999
Q ss_pred Cee
Q 036905 226 QKP 228 (354)
Q Consensus 226 g~~ 228 (354)
|++
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 864
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.39 E-value=6.9e-05 Score=65.18 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=56.6
Q ss_pred HHHHHHhh-cCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchhh
Q 036905 173 IELKQYFS-QCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240 (354)
Q Consensus 173 ~~L~~~F~-~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~ 240 (354)
++|...|+ +||+|+.++|-.+-.-.-+|-++|.|..+++|++|++.||+..++|++|...+..-..-+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 45555665 899999998877654456889999999999999999999999999999999988654433
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.32 E-value=0.00057 Score=51.86 Aligned_cols=77 Identities=16% Similarity=0.151 Sum_probs=53.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEE-EEeC-------CCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeE
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSK-VVVS-------QDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~-v~~d-------~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~ 123 (354)
..+.|.|-+.|++ ....|.+.|++||+|++.. +.++ +......+-.|+|.+..+|.+||+ -||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567899999987 5567789999999998764 1111 101234689999999999999998 5999999877
Q ss_pred EE-ecccc
Q 036905 124 LY-APSLR 130 (354)
Q Consensus 124 i~-~~~~~ 130 (354)
+. +++..
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 76 66653
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.31 E-value=0.00067 Score=45.19 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=41.1
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHH
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai 216 (354)
+.|-|.+.+.+.. +.+..+|..||+|..+.+... ..+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 3567788776655 456669999999999888733 448999999999999985
No 170
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.29 E-value=0.00011 Score=63.92 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=52.8
Q ss_pred HHHHHHHh-hcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 68 WKLHQIFS-KFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 68 ~~L~~~F~-~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
++|...|+ +||+|++++|..+..-.-.|-+||.|..+++|++|++.||+.++.|+.|...+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 89999999887765445678999999999999999999999999999998666543
No 171
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.26 E-value=0.00065 Score=61.23 Aligned_cols=77 Identities=18% Similarity=0.343 Sum_probs=58.9
Q ss_pred CCCeEEEcCCCCCCcHHH------HHHHHhhcCCeeEEEEEeCC-CCC-ceeEE--EEEeecHHHHHHHHHHhhhCccCC
Q 036905 52 PTFIPFTVNLASTIDNWK------LHQIFSKFGDIQSSKVVVSQ-DGK-SKGYG--FVQYSTQESALNAIEKLYAATVEG 121 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~------L~~~F~~~G~i~~v~v~~d~-~g~-skg~a--FV~F~~~e~A~~Ai~~lng~~i~g 121 (354)
...-+||-+|++.+..++ =.++|.+||.|..|.|-+.- ... ..+.+ ||+|.+.|+|.+||..++|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 345789999998877666 24789999999876554432 111 12333 999999999999999999999999
Q ss_pred eEEEecc
Q 036905 122 MELYAPS 128 (354)
Q Consensus 122 ~~i~~~~ 128 (354)
|-|...+
T Consensus 193 r~lkatY 199 (480)
T COG5175 193 RVLKATY 199 (480)
T ss_pred ceEeeec
Confidence 9998554
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.21 E-value=0.0025 Score=48.37 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=50.5
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEE-EeeC-------CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-eE
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVK-IMRT-------NRGISKGFGFVCFSNPDEANRAINTLNGILFHQK-PL 229 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~-i~~~-------~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~-~l 229 (354)
.-|.|-+.|.. ....|.++|++||+|.+.. +.++ +.-....+.-|+|+++.+|.+||.+ ||..|+|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 45777788877 5667888999999998775 1111 0001234899999999999999995 99999885 55
Q ss_pred EEEecc
Q 036905 230 YVAIAQ 235 (354)
Q Consensus 230 ~v~~a~ 235 (354)
-|.+.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 577774
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.19 E-value=0.00037 Score=64.74 Aligned_cols=70 Identities=27% Similarity=0.317 Sum_probs=59.1
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeC---C-C--CCc--------eeEEEEEeecHHHHHHHHHH
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS---Q-D--GKS--------KGYGFVQYSTQESALNAIEK 113 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d---~-~--g~s--------kg~aFV~F~~~e~A~~Ai~~ 113 (354)
..+-++++|.+-|||.+-..+.|.++|..+|.|.+|+|+.. + + +.. +-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33457899999999999999999999999999999999986 3 2 222 56799999999999999997
Q ss_pred hhhC
Q 036905 114 LYAA 117 (354)
Q Consensus 114 lng~ 117 (354)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7543
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.08 E-value=0.0025 Score=51.33 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=46.1
Q ss_pred HHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchh
Q 036905 174 ELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 174 ~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~ 239 (354)
+|.+.|..||+|.-+++..+ .-+|+|.+-++|.+|+. |+|..+.|+.|+|+...+.-.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 67788999999998888765 47999999999999998 899999999999998876543
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.05 E-value=0.00054 Score=63.68 Aligned_cols=70 Identities=26% Similarity=0.390 Sum_probs=57.9
Q ss_pred hhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeC---C---CCCe--------eeEEEEEeCCHHHHHHHHHH
Q 036905 153 TEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT---N---RGIS--------KGFGFVCFSNPDEANRAINT 218 (354)
Q Consensus 153 ~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~---~---~g~~--------kg~afV~f~~~~~A~~Ai~~ 218 (354)
.++..+++|.+.|||.+-.-+.|.++|+.+|.|.+|+|... + .|.+ +-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33456699999999999988999999999999999999876 2 2222 45799999999999999998
Q ss_pred hCCc
Q 036905 219 LNGI 222 (354)
Q Consensus 219 l~g~ 222 (354)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7553
No 176
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0018 Score=61.72 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=61.1
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHh-hcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHH
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFS-KFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEK 113 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~ 113 (354)
....++.+|||||+||.-++.++|..+|+ -||.|+-+-|=+|+ -+-.+|-|=|+|.+..+-.+||+.
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34557789999999999999999999999 69999999999996 788899999999999999999974
No 177
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.90 E-value=0.0024 Score=63.75 Aligned_cols=11 Identities=55% Similarity=1.201 Sum_probs=4.1
Q ss_pred CCCCCCCCCCC
Q 036905 286 PNGFSSPPPSP 296 (354)
Q Consensus 286 ~~~~~~p~~~~ 296 (354)
||+++.|||+|
T Consensus 576 ppg~~gppPPP 586 (1102)
T KOG1924|consen 576 PPGGGGPPPPP 586 (1102)
T ss_pred CCCCCCCCCcC
Confidence 33333333333
No 178
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.88 E-value=0.00045 Score=69.74 Aligned_cols=78 Identities=21% Similarity=0.366 Sum_probs=68.0
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.+||++||+..+++.+|+..|..+|.|.+|.|....-+..--|+||.|.+.+.+-+|..++.+..|..-.+++.+...
T Consensus 373 rTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 889999999999999999999999999999998876555556999999999999999999999988765666666543
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.84 E-value=0.0067 Score=41.49 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=45.6
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcC---CCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQC---GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~---G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l 219 (354)
..|+|++++ +++.++|+.+|..| .....|..+.|.+ |-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS------CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc------EEEEECCHHHHHHHHHcC
Confidence 579999985 68889999999998 2356888888853 999999999999999865
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.83 E-value=0.0009 Score=64.65 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=67.6
Q ss_pred hcCCceEEEeCCCCccCHHHHHHHhh-cCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee---CCeeEE
Q 036905 155 EILDKNLYVKNINDDVDEIELKQYFS-QCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF---HQKPLY 230 (354)
Q Consensus 155 ~~~~~~l~v~nl~~~~t~~~L~~~F~-~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i---~g~~l~ 230 (354)
...++.|||.||-.-+|.-.|+.++. .+|.|+...|-+ -|..|||.|.+.++|...+.+|||..+ +++.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 34558999999999999999999998 567777773322 355799999999999999999999865 679999
Q ss_pred EEeccCchhhh
Q 036905 231 VAIAQTKRERT 241 (354)
Q Consensus 231 v~~a~~~~~~~ 241 (354)
+.|+...+..+
T Consensus 516 adf~~~deld~ 526 (718)
T KOG2416|consen 516 ADFVRADELDK 526 (718)
T ss_pred eeecchhHHHH
Confidence 99998766543
No 181
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.74 E-value=0.002 Score=59.90 Aligned_cols=82 Identities=27% Similarity=0.419 Sum_probs=65.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc-eeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI-LFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~-~i~g~~l~v~~a~~~ 237 (354)
+.+|++||...++..+|+.+|...-.-.+-.++. ..||+||.+.+..-|.+|++.++|+ .+.|+++.|.+.-++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4689999999999999999997542111111222 2589999999999999999999997 689999999999988
Q ss_pred hhhhHHHH
Q 036905 238 RERTSYLR 245 (354)
Q Consensus 238 ~~~~~~~~ 245 (354)
..+..+.+
T Consensus 77 kqrsrk~Q 84 (584)
T KOG2193|consen 77 KQRSRKIQ 84 (584)
T ss_pred HHHhhhhh
Confidence 87766544
No 182
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.55 E-value=0.0037 Score=54.53 Aligned_cols=82 Identities=23% Similarity=0.284 Sum_probs=65.9
Q ss_pred HHHhccccccccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHH
Q 036905 33 LRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIE 112 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~ 112 (354)
.+++....+.......-... ..|+|.||..-++.+.|..-|+.||.|....++.|..++..+-++|.|...-.|.+|..
T Consensus 12 ~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 12 RELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred HhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHH
Confidence 33444443333333333334 78999999999999999999999999999888888889999999999999999999998
Q ss_pred Hhh
Q 036905 113 KLY 115 (354)
Q Consensus 113 ~ln 115 (354)
.++
T Consensus 91 r~~ 93 (275)
T KOG0115|consen 91 RCR 93 (275)
T ss_pred Hhc
Confidence 763
No 183
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.53 E-value=0.02 Score=55.26 Aligned_cols=69 Identities=19% Similarity=0.344 Sum_probs=57.4
Q ss_pred ceEEEeCCCCccCHHHHHHHhh--cCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--ceeCCeeEEEEe
Q 036905 159 KNLYVKNINDDVDEIELKQYFS--QCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG--ILFHQKPLYVAI 233 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~--~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g--~~i~g~~l~v~~ 233 (354)
+.|.++.|+..+-.|+++.+|+ .|-.+++|.+-.+.+ =||+|++..||+.|...|.. +.|-||+|..++
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 7788999999999999999996 588999999887643 59999999999999887754 467787776543
No 184
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.49 E-value=0.0072 Score=53.72 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=51.0
Q ss_pred HHHHHHHHhhcCCeeEEEEEeCCC-CC-ceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 67 NWKLHQIFSKFGDIQSSKVVVSQD-GK-SKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 67 e~~L~~~F~~~G~i~~v~v~~d~~-g~-skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
++++++-+++||.|..|-|..+++ -. -.---||+|+..++|.+|+-.|||..++||.+..-|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 357888999999999998888762 11 223589999999999999999999999999988433
No 185
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.25 E-value=0.012 Score=47.47 Aligned_cols=77 Identities=22% Similarity=0.254 Sum_probs=52.6
Q ss_pred CCCCCCeEEEcCCC------CCCcH---HHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCcc
Q 036905 49 MATPTFIPFTVNLA------STIDN---WKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119 (354)
Q Consensus 49 ~~~~~~~lfV~nLp------~~~te---~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i 119 (354)
...+..+|.|.=+. ...++ .+|.+.|..||++.-++++-+ --+|+|.+-++|-+|++ ++|..+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEE
Confidence 34455677776555 12333 367788889999988887743 58999999999999997 899999
Q ss_pred CCeEEEeccccccc
Q 036905 120 EGMELYAPSLRAGR 133 (354)
Q Consensus 120 ~g~~i~~~~~~~~~ 133 (354)
+|+.|.++....++
T Consensus 95 ~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 95 NGRTLKIRLKTPDW 108 (146)
T ss_dssp TTEEEEEEE-----
T ss_pred CCEEEEEEeCCccH
Confidence 99999987766544
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.17 E-value=0.031 Score=38.27 Aligned_cols=53 Identities=15% Similarity=0.163 Sum_probs=43.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhc----CCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHh
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKF----GDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~l 114 (354)
..|+|++++ +++.+||+.+|..| +. ..|..+-|. .|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 479999996 59999999999998 43 456677663 4889999999999999764
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.15 E-value=0.026 Score=40.79 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=41.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhh
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY 115 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 115 (354)
++..+|. +|......||.++|+.||.|. |..+-| .-|||...+.+.|..++..++
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 3456666 999999999999999999986 555544 369999999999999998765
No 188
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.12 E-value=0.005 Score=59.69 Aligned_cols=78 Identities=23% Similarity=0.243 Sum_probs=62.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhh-cCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCcc---CCeEE
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSK-FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV---EGMEL 124 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i---~g~~i 124 (354)
....+..|+|.||-.-+|.-+|++++.+ .|.|++.+| -+-|..|||.|.+.++|...+..|||..+ +.+.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-----DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-----DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-----HHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 4456889999999999999999999995 667777643 23467899999999999999999999876 35666
Q ss_pred Eeccccc
Q 036905 125 YAPSLRA 131 (354)
Q Consensus 125 ~~~~~~~ 131 (354)
.+-|...
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 6555544
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.73 E-value=0.0036 Score=56.91 Aligned_cols=80 Identities=19% Similarity=0.369 Sum_probs=62.9
Q ss_pred ceEEEeCCCCccCHHHHH---HHhhcCCCeeEEEEeeCCC--CC--eeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 036905 159 KNLYVKNINDDVDEIELK---QYFSQCGIISSVKIMRTNR--GI--SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~---~~F~~~G~v~~v~i~~~~~--g~--~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 231 (354)
+-+||-+|+..+.++.+. +.|.+||.|.+|.+.++.. .. .-.-++|+|+..++|..||...+|...+|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 456788888777655544 5788999999999888652 11 1224899999999999999999999999999888
Q ss_pred EeccCch
Q 036905 232 AIAQTKR 238 (354)
Q Consensus 232 ~~a~~~~ 238 (354)
.+..++-
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 8887654
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.64 E-value=0.0091 Score=50.48 Aligned_cols=69 Identities=7% Similarity=0.027 Sum_probs=46.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhh-cCCe---eEEEEEeCC--CC-CceeEEEEEeecHHHHHHHHHHhhhCccC
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSK-FGDI---QSSKVVVSQ--DG-KSKGYGFVQYSTQESALNAIEKLYAATVE 120 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~i---~~v~v~~d~--~g-~skg~aFV~F~~~e~A~~Ai~~lng~~i~ 120 (354)
...+|.|++||+++|++++.+.++. ++.- ..+.-.... .. ....-|||.|.+.+++......++|+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4569999999999999999998876 6665 233312222 11 22457999999999999999999987653
No 191
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.60 E-value=0.62 Score=41.89 Aligned_cols=190 Identities=16% Similarity=0.240 Sum_probs=117.2
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC--------CCCceeEEEEEeecHHHHHHHH----HHhh
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ--------DGKSKGYGFVQYSTQESALNAI----EKLY 115 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~--------~g~skg~aFV~F~~~e~A~~Ai----~~ln 115 (354)
.++-.+|.|...|+..+++--.+...|.+||.|++|.++.+. .-+......+.|-+.+.+-... ++|+
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999999999999875 2234567899999998876543 3343
Q ss_pred h--CccCCeEEEeccccccc-----cc-cccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHH---hhcCC-
Q 036905 116 A--ATVEGMELYAPSLRAGR-----IQ-ESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQY---FSQCG- 183 (354)
Q Consensus 116 g--~~i~g~~i~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~---F~~~G- 183 (354)
. ..+....+.+.|..-.. .. ............+.-.....+..+.|.|.--....+++-+.+. +..-+
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCC
Confidence 2 23566666655544211 11 1111111112334444445555577877644333233323322 22222
Q ss_pred ---CeeEEEEeeCC---CCCeeeEEEEEeCCHHHHHHHHHHhC--CceeC-CeeEEEEeccCc
Q 036905 184 ---IISSVKIMRTN---RGISKGFGFVCFSNPDEANRAINTLN--GILFH-QKPLYVAIAQTK 237 (354)
Q Consensus 184 ---~v~~v~i~~~~---~g~~kg~afV~f~~~~~A~~Ai~~l~--g~~i~-g~~l~v~~a~~~ 237 (354)
.+++|.++... ..-++.||.++|=+..-|.+.++-+. +...+ .+-..|+++...
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~~ 232 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPHA 232 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCcc
Confidence 46778777543 34467899999999999999988765 33332 455566665433
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.39 E-value=0.035 Score=47.17 Aligned_cols=63 Identities=27% Similarity=0.299 Sum_probs=47.3
Q ss_pred CHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeeEEEEeccCch
Q 036905 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN--GILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 171 t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~--g~~i~g~~l~v~~a~~~~ 238 (354)
..+.|+++|..|+.+....+.+.- +-..|.|.+.++|.+|...|+ +..+.|..++|-|++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999999988887752 348999999999999999999 999999999999995443
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.37 E-value=0.18 Score=38.95 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=48.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCC
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG 121 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g 121 (354)
..+-+...|..++.++|..+.+.+- .|..++|++|.+. ++--+.+.|++.++|+...+.+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444455555566766666554 4788999988632 56678999999999999999999988753
No 194
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.34 E-value=0.094 Score=48.66 Aligned_cols=75 Identities=17% Similarity=0.260 Sum_probs=61.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCC----CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR----GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~----g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
..|.|.||...+|.+++..+|.-.|.|..+.++.... ......|||.|.+...+..|-. |.++.|-|+.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4789999999999999999999999999999987432 2235689999999999988866 6777777777666544
No 195
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.24 E-value=0.12 Score=37.50 Aligned_cols=54 Identities=26% Similarity=0.372 Sum_probs=41.1
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 220 (354)
...||. .|..+...||.++|+.||.|. |..+.|. .|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC------cEEEEeecHHHHHHHHHHhc
Confidence 455666 899999999999999999865 5555552 59999999999999988775
No 196
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.24 E-value=0.058 Score=43.09 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=57.5
Q ss_pred hcCCceEEEeCCCCcc-CHHH---HHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 036905 155 EILDKNLYVKNINDDV-DEIE---LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230 (354)
Q Consensus 155 ~~~~~~l~v~nl~~~~-t~~~---L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 230 (354)
+.+-.+|.|+-|..++ ..+| +...++.||.|.+|...- +..|.|.|.+..+|-+|+.+++. ..-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 3344789998877665 2344 445568999999998874 34699999999999999998866 56788888
Q ss_pred EEeccC
Q 036905 231 VAIAQT 236 (354)
Q Consensus 231 v~~a~~ 236 (354)
++|..+
T Consensus 156 CsWqqr 161 (166)
T PF15023_consen 156 CSWQQR 161 (166)
T ss_pred eecccc
Confidence 888654
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.01 E-value=0.082 Score=44.70 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=51.7
Q ss_pred ceEEEeCCCCccCHHHHHHHhhc-CCCe---eEEEEeeCC--CC-CeeeEEEEEeCCHHHHHHHHHHhCCceeCC-----
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQ-CGII---SSVKIMRTN--RG-ISKGFGFVCFSNPDEANRAINTLNGILFHQ----- 226 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~-~G~v---~~v~i~~~~--~g-~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g----- 226 (354)
.+|.|++||..+|++++.+.++. ++.- .++.-.... .. ..-.-|+|.|.+.++.......++|..|.+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 68999999999999999997776 6655 233311221 11 123459999999999999999999988743
Q ss_pred eeEEEEeccC
Q 036905 227 KPLYVAIAQT 236 (354)
Q Consensus 227 ~~l~v~~a~~ 236 (354)
.+..|.+|--
T Consensus 88 ~~~~VE~Apy 97 (176)
T PF03467_consen 88 YPAVVEFAPY 97 (176)
T ss_dssp EEEEEEE-SS
T ss_pred cceeEEEcch
Confidence 3556777754
No 198
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.91 E-value=0.074 Score=53.62 Aligned_cols=7 Identities=57% Similarity=1.374 Sum_probs=2.7
Q ss_pred CCCCCCc
Q 036905 291 SPPPSPL 297 (354)
Q Consensus 291 ~p~~~~~ 297 (354)
+||++|+
T Consensus 569 ~PPpPpp 575 (1102)
T KOG1924|consen 569 GPPPPPP 575 (1102)
T ss_pred CCCccCC
Confidence 3443333
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.77 E-value=0.35 Score=37.40 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=51.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g 226 (354)
..+.+-..|..++.++|..+.+.+- .|..++|.++... .+-.+.+.|.+.++|..-...+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555566677778877666654 6678899988643 46679999999999999999999998863
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.76 E-value=0.15 Score=45.85 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=54.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE-ecc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY-APS 128 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~-~~~ 128 (354)
+..|.|-++|+.- -.-|..+|++||+|++... +....+-+|.|.+.-+|++||.+ ||+.|+|..+. |+.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~-----~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVT-----PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeec-----CCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 6788888998754 4567789999999986533 23345899999999999999985 99999988877 554
No 201
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.74 E-value=0.19 Score=40.19 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=55.8
Q ss_pred cCCCCCCeEEEcCCCCCCc----HHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeE
Q 036905 48 AMATPTFIPFTVNLASTID----NWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~t----e~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~ 123 (354)
....+-.+|.|+=|..++. -+.+...++.||+|.+|.+. | +--|.|.|++..+|-+|+..... ...|..
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----C--CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 4456677888887766653 33455566789999999876 3 45799999999999999998654 566777
Q ss_pred EEecccc
Q 036905 124 LYAPSLR 130 (354)
Q Consensus 124 i~~~~~~ 130 (354)
+.+.|..
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 7766543
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.24 E-value=0.0036 Score=61.54 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=63.4
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
....+..++||+|+...+..+-++.+...+|.|-+|+... |||.+|.......+|+..|+-..++|.++.+.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 3445667999999999999999999999999999987653 99999999999999999999999999888744
No 203
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.01 E-value=0.032 Score=52.90 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=57.8
Q ss_pred EEEeCCCCcc-CHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 161 LYVKNINDDV-DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 161 l~v~nl~~~~-t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
|-+.-.+... |.++|..+|.+||+|..|.|-... -.|.|+|.+..+|-+|.. .++..|+++.|+|.|-.+..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCch-----hhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 3333344443 568899999999999999987652 259999999999988876 69999999999999987643
No 204
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.82 E-value=0.22 Score=48.40 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=58.5
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhh--cCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhh--CccCCeE
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSK--FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA--ATVEGME 123 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~--~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng--~~i~g~~ 123 (354)
....+-+.|.++-||..+-+++++.+|.. +-++.+|.+..+. -=||+|++..||+.|.+.|.. +.|.|+.
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 33445677889999999999999999985 7889999987653 368999999999999998764 3477777
Q ss_pred EE
Q 036905 124 LY 125 (354)
Q Consensus 124 i~ 125 (354)
|.
T Consensus 244 Im 245 (684)
T KOG2591|consen 244 IM 245 (684)
T ss_pred hh
Confidence 76
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.67 E-value=0.14 Score=46.05 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=51.4
Q ss_pred EeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeE-EEEeccCchhh
Q 036905 163 VKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL-YVAIAQTKRER 240 (354)
Q Consensus 163 v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l-~v~~a~~~~~~ 240 (354)
|-+.+.. .-.-|..+|++||+|.+.... .+| .+-.|.|.+.-+|.+||.. ||+.|+|..+ -|.-...|...
T Consensus 202 VfGFppg-~~s~vL~~F~~cG~Vvkhv~~--~ng---NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDksvi 273 (350)
T KOG4285|consen 202 VFGFPPG-QVSIVLNLFSRCGEVVKHVTP--SNG---NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKSVI 273 (350)
T ss_pred EeccCcc-chhHHHHHHHhhCeeeeeecC--CCC---ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHHHh
Confidence 3355443 335678899999999877665 333 3899999999999999995 9999987544 56665555443
No 206
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.31 E-value=0.052 Score=55.02 Aligned_cols=75 Identities=23% Similarity=0.264 Sum_probs=64.1
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee--CCeeEEEEeccC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF--HQKPLYVAIAQT 236 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i--~g~~l~v~~a~~ 236 (354)
.+.++.|..-..+-..|..+|+.||.|.+++..++-+ .|.|+|.+.+.|..|+++|+|+.+ -|-+.+|.+|+.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4455666677788889999999999999999988743 699999999999999999999876 588999999986
Q ss_pred ch
Q 036905 237 KR 238 (354)
Q Consensus 237 ~~ 238 (354)
-.
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 54
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.09 E-value=0.45 Score=33.91 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=36.5
Q ss_pred CccCHHHHHHHhhcCC-----CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 168 DDVDEIELKQYFSQCG-----IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 168 ~~~t~~~L~~~F~~~G-----~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
+.++..+|..++...+ .|-.|.|..+ |+||+-.. +.|..+++.|++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4577888888887654 4566777765 88998866 5889999999999999999999865
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.93 E-value=0.56 Score=32.60 Aligned_cols=56 Identities=21% Similarity=0.427 Sum_probs=44.9
Q ss_pred CccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 036905 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231 (354)
Q Consensus 168 ~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 231 (354)
..++-++++..+..|+- .+|..+.+ || ||.|.+.++|+++....+|..+.+.+|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35788999999999974 33445544 44 89999999999999999999998877765
No 209
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.81 E-value=0.32 Score=47.57 Aligned_cols=84 Identities=23% Similarity=0.216 Sum_probs=67.3
Q ss_pred CCCCCCeEEEcCCCCC-CcHHHHHHHHhhc----CCeeEEEEEeCCC-----------CC--------------------
Q 036905 49 MATPTFIPFTVNLAST-IDNWKLHQIFSKF----GDIQSSKVVVSQD-----------GK-------------------- 92 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~-~te~~L~~~F~~~----G~i~~v~v~~d~~-----------g~-------------------- 92 (354)
....+++|-|-|++|+ +..+||.-+|+.| |.|++|.|+...- |.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3567899999999997 8889999999976 5899999876331 22
Q ss_pred -----------------ceeEEEEEeecHHHHHHHHHHhhhCccCC--eEEEecccccc
Q 036905 93 -----------------SKGYGFVQYSTQESALNAIEKLYAATVEG--MELYAPSLRAG 132 (354)
Q Consensus 93 -----------------skg~aFV~F~~~e~A~~Ai~~lng~~i~g--~~i~~~~~~~~ 132 (354)
.--||.|+|.+.+.|....+.++|..+.. ..+..+|++..
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 12589999999999999999999999874 45558888763
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.70 E-value=0.52 Score=32.79 Aligned_cols=54 Identities=6% Similarity=0.054 Sum_probs=43.9
Q ss_pred CCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 64 TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 64 ~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.++-++++..+..|+-. +|..|++| =||.|.+.++|+++....+|..+.+-.+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 57889999999999753 46667666 58999999999999999998887765543
No 211
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.33 E-value=0.063 Score=48.97 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=55.9
Q ss_pred CCeEEEcCCCCCCcHHHHH---HHHhhcCCeeEEEEEeCCC--CC--ceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 53 TFIPFTVNLASTIDNWKLH---QIFSKFGDIQSSKVVVSQD--GK--SKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~v~~d~~--g~--skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
..-+||-+|+.....+.+. +.|.+||.|..|.+..+.+ .. ..--+||+|+..|+|..||...+|..+.|+.+.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4567888888776555443 4788999999887777652 11 122499999999999999999999999998765
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.16 E-value=0.62 Score=44.27 Aligned_cols=69 Identities=10% Similarity=0.154 Sum_probs=59.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCC
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG 121 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g 121 (354)
+++.|+|-.+|..++--||..+...|- .|.++++++|..+ .+--..|.|.+.++|....+.+||+.++.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 388999999999999999999998754 5899999997532 34468999999999999999999998764
No 213
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.01 E-value=0.076 Score=50.46 Aligned_cols=78 Identities=15% Similarity=0.035 Sum_probs=61.6
Q ss_pred cCCCCCCeEEEcCCCCCC-cHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTI-DNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~-te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
......+.|-+.-.|... |..+|...|.+||.|..|.|-.. --.|.|+|.+..+|-+|.. .++..|+++.|.+
T Consensus 367 ~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl 440 (526)
T KOG2135|consen 367 HAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKL 440 (526)
T ss_pred chhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEE
Confidence 344455666666666664 55889999999999999988654 3469999999999977775 5899999999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.|...
T Consensus 441 ~whnp 445 (526)
T KOG2135|consen 441 FWHNP 445 (526)
T ss_pred EEecC
Confidence 88765
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.96 E-value=0.32 Score=41.37 Aligned_cols=60 Identities=20% Similarity=0.108 Sum_probs=45.2
Q ss_pred cHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhh--hCccCCeEEEecccc
Q 036905 66 DNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY--AATVEGMELYAPSLR 130 (354)
Q Consensus 66 te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln--g~~i~g~~i~~~~~~ 130 (354)
..+.|+++|..|+.+.+...++ +-+-..|.|.+.++|.+|...|+ +..+.|..+.+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 3478999999999998887764 35568999999999999999999 889999998877663
No 215
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.03 E-value=0.14 Score=50.69 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=63.8
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
....++||+|+-..+..+-++.+...+|.|.+++... |||+.|.....+.+|+..++-..++|..+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3447899999999999999999999999999988765 8999999999999999999999999988877764
No 216
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.88 E-value=0.9 Score=43.22 Aligned_cols=68 Identities=16% Similarity=0.295 Sum_probs=58.3
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcC-CCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQC-GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~-G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g 226 (354)
...|+|-.+|..++--||..|...| -.|.+++|++|..+ .+-...|.|.+.++|......+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5789999999999999999998765 47889999997532 25568999999999999999999998864
No 217
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.58 E-value=0.33 Score=35.82 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=44.7
Q ss_pred EEEEeecHHHHHHHHHHhh-hCccCCeEEEeccccc--cccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHH
Q 036905 97 GFVQYSTQESALNAIEKLY-AATVEGMELYAPSLRA--GRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEI 173 (354)
Q Consensus 97 aFV~F~~~e~A~~Ai~~ln-g~~i~g~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~ 173 (354)
|+|+|.+.+.|++.++.-. -..+++..+.+...+. ..... -........++|.|.|||+..+++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k-------------~qv~~~vs~rtVlvsgip~~l~ee 67 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQK-------------FQVFSGVSKRTVLVSGIPDVLDEE 67 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceE-------------EEEEEcccCCEEEEeCCCCCCChh
Confidence 6899999999999997411 1235566655433322 11000 011222334899999999999999
Q ss_pred HHHHHhh
Q 036905 174 ELKQYFS 180 (354)
Q Consensus 174 ~L~~~F~ 180 (354)
+|++..+
T Consensus 68 ~l~D~Le 74 (88)
T PF07292_consen 68 ELRDKLE 74 (88)
T ss_pred hheeeEE
Confidence 9998654
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.06 E-value=2.4 Score=41.73 Aligned_cols=79 Identities=27% Similarity=0.272 Sum_probs=62.0
Q ss_pred cCCceEEEeCCCCc-cCHHHHHHHhhcC----CCeeEEEEeeCCC-----------CC----------------------
Q 036905 156 ILDKNLYVKNINDD-VDEIELKQYFSQC----GIISSVKIMRTNR-----------GI---------------------- 197 (354)
Q Consensus 156 ~~~~~l~v~nl~~~-~t~~~L~~~F~~~----G~v~~v~i~~~~~-----------g~---------------------- 197 (354)
...++|-|-|++|. +..++|.-+|+.| |.|.+|.|....- |.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34488999999986 7889999998866 6999999866421 11
Q ss_pred ---------------eeeEEEEEeCCHHHHHHHHHHhCCceeC--CeeEEEEec
Q 036905 198 ---------------SKGFGFVCFSNPDEANRAINTLNGILFH--QKPLYVAIA 234 (354)
Q Consensus 198 ---------------~kg~afV~f~~~~~A~~Ai~~l~g~~i~--g~~l~v~~a 234 (354)
.--||.|+|.+.+.|......++|..+. +..|-++|-
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1137999999999999999999999987 456666665
No 219
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.26 E-value=0.36 Score=49.29 Aligned_cols=72 Identities=21% Similarity=0.222 Sum_probs=57.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCcc--CCeEEEecccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV--EGMELYAPSLR 130 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i--~g~~i~~~~~~ 130 (354)
.+..+.|.+-+.+...|..+|..||.|.+.+..++ ...|.|+|.+.+.|..|+..|+|+.+ .|-..+|.+.+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 34455566667888999999999999999998876 45799999999999999999999874 34444444443
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.82 E-value=5.1 Score=28.41 Aligned_cols=56 Identities=14% Similarity=0.231 Sum_probs=34.8
Q ss_pred CCcHHHHHHHHhhcCC-----eeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 64 TIDNWKLHQIFSKFGD-----IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 64 ~~te~~L~~~F~~~G~-----i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
.++..+|..++..-+. |-.|+|.. .|.||+-.. +.|+.+++.|++..+.|+++.++
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD-------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S-------S-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee-------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 5788899999987644 55677763 389998865 48899999999999999998764
No 221
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=82.07 E-value=0.98 Score=37.61 Aligned_cols=76 Identities=16% Similarity=0.088 Sum_probs=48.1
Q ss_pred HHHhccccccccccccCCCCCCeEEEcCCCCCCcHHHHHHHHh-hcCCeeEEEEEeCCCC--CceeEEEEEeecHHHHHH
Q 036905 33 LRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFS-KFGDIQSSKVVVSQDG--KSKGYGFVQYSTQESALN 109 (354)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~v~~d~~g--~skg~aFV~F~~~e~A~~ 109 (354)
++..+..+.............+++|.+ .|++.|.++.. .-|.+..+++.....+ ..+|--||+|.+.+.|..
T Consensus 91 rr~~skplpEvt~e~~~~~~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a 165 (205)
T KOG4213|consen 91 RRSPSKPLPEVTDEYKEGIKERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFA 165 (205)
T ss_pred hcCcCCCCccccHHHHHHHHHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHh
Confidence 333334443333334444556778877 44444444433 1278887776655444 668999999999999999
Q ss_pred HHHH
Q 036905 110 AIEK 113 (354)
Q Consensus 110 Ai~~ 113 (354)
.++.
T Consensus 166 ~~~~ 169 (205)
T KOG4213|consen 166 NDDT 169 (205)
T ss_pred hhhh
Confidence 8864
No 222
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=80.76 E-value=1.6 Score=36.43 Aligned_cols=78 Identities=24% Similarity=0.247 Sum_probs=55.5
Q ss_pred cCCceEEEeCCCCccCH-----HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-eE
Q 036905 156 ILDKNLYVKNINDDVDE-----IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK-PL 229 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~-----~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~-~l 229 (354)
+...++.+.+++..+.. .....+|.+|.+.....+.+ +.++..|.|.+++.|..|.-++++..|.|+ .+
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 44466777777766432 22344555665555445554 355678899999999999999999999998 88
Q ss_pred EEEeccCch
Q 036905 230 YVAIAQTKR 238 (354)
Q Consensus 230 ~v~~a~~~~ 238 (354)
+.-|+++.-
T Consensus 83 k~yfaQ~~~ 91 (193)
T KOG4019|consen 83 KLYFAQPGH 91 (193)
T ss_pred EEEEccCCC
Confidence 888887653
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=77.58 E-value=12 Score=27.42 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=44.0
Q ss_pred eEEEeCCCCccCHHHHHHHhhc-CC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 036905 160 NLYVKNINDDVDEIELKQYFSQ-CG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l 219 (354)
+-|+-.++...+..+|++.++. || .|.+|..+.-..+. .-|||++...++|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--EEEEEEeCCCCcHHHHHHhh
Confidence 4455567888999999999976 66 67888777665543 34999999999998876654
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=74.63 E-value=17 Score=26.12 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=43.5
Q ss_pred eEEEeCCCCccCHHHHHHHhhc-CC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 036905 160 NLYVKNINDDVDEIELKQYFSQ-CG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l 219 (354)
+-|+-.++...+..+|++.++. || .|.+|..+.-+.+. .-|||++...+.|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~--KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE--KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--eEEEEEECCCCcHHHHHHhh
Confidence 4566667889999999999976 66 67777776655433 34999999988888776554
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=73.13 E-value=16 Score=26.73 Aligned_cols=58 Identities=10% Similarity=0.237 Sum_probs=43.9
Q ss_pred eEEEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHh
Q 036905 55 IPFTVNLASTIDNWKLHQIFSK-FG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114 (354)
Q Consensus 55 ~lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~l 114 (354)
+-|+-.++.+.+..+|++.++. || .|.+|..+.-+.+. -=|||.+...++|.....++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~--KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE--KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc--EEEEEEeCCCCcHHHHHHhh
Confidence 3445556789999999999997 66 47888777665443 35999999999988876654
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=72.27 E-value=11 Score=33.93 Aligned_cols=54 Identities=15% Similarity=0.051 Sum_probs=38.9
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHH
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQE 105 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e 105 (354)
.......-|+++||+.++.-+||+..+.+-|-+- ..|.+. -..|-||++|.+..
T Consensus 325 ~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswk---g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 325 VEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWK---GHFGKCFLHFGNRK 378 (396)
T ss_pred ccCccccceeeccCccccchHHHHHHHHhcCCCc-eeEeee---cCCcceeEecCCcc
Confidence 3444467799999999999999999999876531 222222 24678999997743
No 227
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.52 E-value=12 Score=35.37 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=48.6
Q ss_pred hhcCCceEEEeCCCCccCHHHHHHHhhcCCC-eeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 036905 154 EEILDKNLYVKNINDDVDEIELKQYFSQCGI-ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218 (354)
Q Consensus 154 ~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~-v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 218 (354)
+.+..+.|-|.++|.....+||...|+.|+. =.+|+++.+. .+|-.|++...|..|+..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc
Confidence 3445588999999999999999999999974 3567777663 599999999999999984
No 228
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=68.00 E-value=9.6 Score=30.87 Aligned_cols=110 Identities=16% Similarity=0.000 Sum_probs=67.7
Q ss_pred CCcHHHHHHHHhh-cCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE-eccccccccccccccc
Q 036905 64 TIDNWKLHQIFSK-FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSLRAGRIQESASFN 141 (354)
Q Consensus 64 ~~te~~L~~~F~~-~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~-~~~~~~~~~~~~~~~~ 141 (354)
+++-..|...+.. ++....+++..- ..++..++|.+.+++.++++. ....+.+..+. ..|.+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~----- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSE----- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccc-----
Confidence 4667777776664 344333444332 357999999999999999973 34445555554 23322111000
Q ss_pred cccccCCCchhhhhcCCceEEEeCCCCc-cCHHHHHHHhhcCCCeeEEEEeeC
Q 036905 142 NLYVKNLDDDVTEEILDKNLYVKNINDD-VDEIELKQYFSQCGIISSVKIMRT 193 (354)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~v~i~~~ 193 (354)
..-.....=|.|.|||.. .+++-|+.+.+.+|++..+.....
T Consensus 98 ----------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 98 ----------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ----------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 000011134678899987 578889999999999988876654
No 229
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=67.83 E-value=21 Score=33.78 Aligned_cols=86 Identities=24% Similarity=0.241 Sum_probs=61.3
Q ss_pred cccCCCCCCeEEEcCCCCC-CcHHHHHHHHhhc----CCeeEEEEEeCCCCCc---------------------------
Q 036905 46 HSAMATPTFIPFTVNLAST-IDNWKLHQIFSKF----GDIQSSKVVVSQDGKS--------------------------- 93 (354)
Q Consensus 46 ~~~~~~~~~~lfV~nLp~~-~te~~L~~~F~~~----G~i~~v~v~~d~~g~s--------------------------- 93 (354)
......++.+|-|-||+|+ +...+|.-+|+.| |.|..|.|+...-|+.
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~ 218 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKF 218 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhcc
Confidence 3444677889999999986 7889999999875 5677777654221110
Q ss_pred ---------------------------------------eeEEEEEeecHHHHHHHHHHhhhCccCCeE--EEeccccc
Q 036905 94 ---------------------------------------KGYGFVQYSTQESALNAIEKLYAATVEGME--LYAPSLRA 131 (354)
Q Consensus 94 ---------------------------------------kg~aFV~F~~~e~A~~Ai~~lng~~i~g~~--i~~~~~~~ 131 (354)
--||.|++.+.+.+......++|..+.... +..+|++.
T Consensus 219 ~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 219 GDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred CCccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 237899999999999999999998865432 22555554
No 230
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=64.67 E-value=29 Score=24.92 Aligned_cols=58 Identities=12% Similarity=0.255 Sum_probs=43.0
Q ss_pred eEEEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHh
Q 036905 55 IPFTVNLASTIDNWKLHQIFSK-FG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL 114 (354)
Q Consensus 55 ~lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~l 114 (354)
+-|+-.++.+.+..+|++.++. || .|.+|..+.-+.+ .-=|||.+...++|...-.++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHhh
Confidence 3555567889999999999996 66 4777777666543 235999998888887765543
No 231
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.97 E-value=19 Score=34.11 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=48.1
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCe-eEEEEEeCCCCCceeEEEEEeecHHHHHHHHH
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDI-QSSKVVVSQDGKSKGYGFVQYSTQESALNAIE 112 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~ 112 (354)
.+.+-.+.|-|.++|.....+||...|+.|++- -.|+++-| -.||-.|.+...|..|+.
T Consensus 386 ~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 386 RESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALT 445 (528)
T ss_pred CcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhh
Confidence 444557899999999999999999999999863 34455443 379999999999999996
No 232
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=62.97 E-value=18 Score=24.70 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=16.5
Q ss_pred HHHHHHhhcCCCeeEEEEee
Q 036905 173 IELKQYFSQCGIISSVKIMR 192 (354)
Q Consensus 173 ~~L~~~F~~~G~v~~v~i~~ 192 (354)
.+||++|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 67999999999987776644
No 233
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=62.44 E-value=18 Score=32.59 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=35.4
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCe-eEEEEeeCCCCCeeeEEEEEeCCHH
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGII-SSVKIMRTNRGISKGFGFVCFSNPD 210 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v-~~v~i~~~~~g~~kg~afV~f~~~~ 210 (354)
..||++||+.++.-.||+..+.+-+.+ .++.+. | ..|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----G-HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee----c-CCcceeEecCCcc
Confidence 679999999999999999999877644 333332 2 2567999996643
No 234
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.88 E-value=12 Score=29.21 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=23.7
Q ss_pred CHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHH
Q 036905 171 DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPD 210 (354)
Q Consensus 171 t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~ 210 (354)
+.++|++.|+.|..+. ++...+..| ..|+++|.|...-
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~w 67 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKDW 67 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SSH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCCh
Confidence 4578999999998765 556666554 5899999997543
No 235
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=59.27 E-value=3.5 Score=36.78 Aligned_cols=67 Identities=19% Similarity=0.418 Sum_probs=45.2
Q ss_pred CCeEEEcCCCCC------------CcHHHHHHHHhhcCCeeEEEEEe-----CC-CCCc-----eeEE---------EEE
Q 036905 53 TFIPFTVNLAST------------IDNWKLHQIFSKFGDIQSSKVVV-----SQ-DGKS-----KGYG---------FVQ 100 (354)
Q Consensus 53 ~~~lfV~nLp~~------------~te~~L~~~F~~~G~i~~v~v~~-----d~-~g~s-----kg~a---------FV~ 100 (354)
..+|++.+||-. -+++.|+..|+.||.|..|.|.. .. +|+. +||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457888888732 35778999999999998877643 12 4443 3443 466
Q ss_pred eecHHHHHHHHHHhhhCcc
Q 036905 101 YSTQESALNAIEKLYAATV 119 (354)
Q Consensus 101 F~~~e~A~~Ai~~lng~~i 119 (354)
|.....-..|+..|.|+.+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6666666677777777654
No 236
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=59.25 E-value=20 Score=32.48 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=59.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC--------CCCeeeEEEEEeCCHHHHHHH----HHHhCC--ce
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN--------RGISKGFGFVCFSNPDEANRA----INTLNG--IL 223 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~--------~g~~kg~afV~f~~~~~A~~A----i~~l~g--~~ 223 (354)
.+.|.+.|+..+++--.+...|.+||.|++|.++.+. .-.......+.|-+.+.+... +..|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999999999875 222346789999998887554 333333 34
Q ss_pred eCCeeEEEEecc
Q 036905 224 FHQKPLYVAIAQ 235 (354)
Q Consensus 224 i~g~~l~v~~a~ 235 (354)
+....|++.|..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 667788888775
No 237
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=58.62 E-value=1.7 Score=42.51 Aligned_cols=73 Identities=7% Similarity=-0.002 Sum_probs=57.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeE
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGME 123 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~ 123 (354)
-.++.||++|++++++-++|..+++.+--+..+-+..+. ......+++|+|+.--.-..|+..||+..+....
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 456789999999999999999999988766665554443 4455678999999888888888888887765433
No 238
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=57.65 E-value=15 Score=28.72 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=27.6
Q ss_pred CcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecH-HHHHHHHH
Q 036905 65 IDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQ-ESALNAIE 112 (354)
Q Consensus 65 ~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~-e~A~~Ai~ 112 (354)
++.+.|++.|+.|..+. ++.+.+.. -+.|++.|+|.+- ..-..|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHH
Confidence 45689999999998875 66777664 4679999999763 33444443
No 239
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=54.86 E-value=2.3 Score=43.78 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=28.8
Q ss_pred cCCCCCCeEEEcCCCCCC-cHHHHHHHHhhcC--CeeEEEEE
Q 036905 48 AMATPTFIPFTVNLASTI-DNWKLHQIFSKFG--DIQSSKVV 86 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~-te~~L~~~F~~~G--~i~~v~v~ 86 (354)
.....+++++|..||.++ ++++|.++|.+-+ +|.+..++
T Consensus 203 ~~~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~~i~~~~l~ 244 (827)
T COG5594 203 QNNLSSRTVLISGLPSELRSDEELKELFDKLKVGEIDSDVLC 244 (827)
T ss_pred ccCCCCceEEeecCChhhcCchhHHHHHhhcCeeeeccchhh
Confidence 456678999999999874 6677999999764 34444443
No 240
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=51.52 E-value=61 Score=26.33 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=41.8
Q ss_pred ceEEEeCCCCccCHHHHHHHhhc-CC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQ-CG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 218 (354)
.+-|+--++...+..+|++.++. |+ .|..|..+.-+.|.- -|||++....+|......
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVANK 141 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHHHh
Confidence 35666677889999999999986 66 567776666555443 499999887776654443
No 241
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=45.29 E-value=59 Score=22.24 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=14.7
Q ss_pred HHHHHHHhhcCCeeEEEE
Q 036905 68 WKLHQIFSKFGDIQSSKV 85 (354)
Q Consensus 68 ~~L~~~F~~~G~i~~v~v 85 (354)
.+||++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999875443
No 242
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=45.14 E-value=78 Score=24.64 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=30.7
Q ss_pred CCCcHHHHHHHHhh-cCC---eeEE-EEEeCC-CCCceeEEEEEeecHHHHHHH
Q 036905 63 STIDNWKLHQIFSK-FGD---IQSS-KVVVSQ-DGKSKGYGFVQYSTQESALNA 110 (354)
Q Consensus 63 ~~~te~~L~~~F~~-~G~---i~~v-~v~~d~-~g~skg~aFV~F~~~e~A~~A 110 (354)
.+++.++|++-+++ |-. +..+ .+...- .|++.|||.| |.+.|.|.+.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 35788888888875 322 2222 233333 6889999998 8888877653
No 243
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=39.76 E-value=54 Score=22.83 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=43.2
Q ss_pred HHHHHHhhcCC-CeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 173 IELKQYFSQCG-IISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 173 ~~L~~~F~~~G-~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
++|.+.|...| .|..+.-+... ++..-..-||+.+...+...+ ++=+.+.+.+++|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 56788888777 67777766665 555666788888776553333 4456778888888876554
No 244
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=39.56 E-value=38 Score=28.51 Aligned_cols=73 Identities=21% Similarity=0.150 Sum_probs=46.4
Q ss_pred hcCCceEEEeCCCCccCHHHHHHHhh-cCCCeeEEEEeeCCCC--CeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 036905 155 EILDKNLYVKNINDDVDEIELKQYFS-QCGIISSVKIMRTNRG--ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231 (354)
Q Consensus 155 ~~~~~~l~v~nl~~~~t~~~L~~~F~-~~G~v~~v~i~~~~~g--~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 231 (354)
....+++|.+ .|++.|.++.. .-|.+..+...+...+ ..+|-.||+|.+.+.|...++. +........|..
T Consensus 108 ~~~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r 181 (205)
T KOG4213|consen 108 GIKERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKR 181 (205)
T ss_pred HHHHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHH
Confidence 3444677776 45554444431 1178888887765544 5689999999999999988774 444444444444
Q ss_pred Ee
Q 036905 232 AI 233 (354)
Q Consensus 232 ~~ 233 (354)
.+
T Consensus 182 ~~ 183 (205)
T KOG4213|consen 182 SG 183 (205)
T ss_pred HH
Confidence 33
No 245
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=38.63 E-value=17 Score=26.81 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=22.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHh
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFS 75 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~ 75 (354)
.....++|-|.|||..+++++|++.++
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeEE
Confidence 345678999999999999999997653
No 246
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=37.54 E-value=1.4e+02 Score=26.33 Aligned_cols=10 Identities=20% Similarity=0.600 Sum_probs=4.4
Q ss_pred eEEEEEeCCH
Q 036905 200 GFGFVCFSNP 209 (354)
Q Consensus 200 g~afV~f~~~ 209 (354)
|.++-++.-.
T Consensus 49 glsihcmqvh 58 (341)
T KOG2893|consen 49 GLSIHCMQVH 58 (341)
T ss_pred Cceeehhhhh
Confidence 4444444433
No 247
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.95 E-value=72 Score=29.48 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.5
Q ss_pred EEEEeecHHHHHHHHHHhhhCc
Q 036905 97 GFVQYSTQESALNAIEKLYAAT 118 (354)
Q Consensus 97 aFV~F~~~e~A~~Ai~~lng~~ 118 (354)
|||+|++..+|..|++.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999998655443
No 248
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.88 E-value=44 Score=30.93 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=25.7
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 202 GFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 202 afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
|||+|++..+|..|++.+.... ++.+++..|-..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999999655443 3555777665443
No 249
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=33.95 E-value=56 Score=23.70 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=25.1
Q ss_pred CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce
Q 036905 184 IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223 (354)
Q Consensus 184 ~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~ 223 (354)
.|.++....+ -+||-||+=.+.++...|++.+.+..
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4555555544 58999999999999999998876643
No 250
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=33.91 E-value=1.1e+02 Score=23.07 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHhh-cCCeeEEEEEeC---C--CCCceeEEEEEeecHHHHHHH
Q 036905 63 STIDNWKLHQIFSK-FGDIQSSKVVVS---Q--DGKSKGYGFVQYSTQESALNA 110 (354)
Q Consensus 63 ~~~te~~L~~~F~~-~G~i~~v~v~~d---~--~g~skg~aFV~F~~~e~A~~A 110 (354)
...+..+|++-+.. |+.=.+.-++.. . .|++.|||.| |.|.+.|.+.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677788877764 553222222222 2 3677888888 7777776654
No 251
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=33.36 E-value=64 Score=22.59 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=40.9
Q ss_pred HHHHHHhhcCC-CeeEEEEeeCCC-CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 173 IELKQYFSQCG-IISSVKIMRTNR-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 173 ~~L~~~F~~~G-~v~~v~i~~~~~-g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
++|.+.|..+| .|..+.-+.... +.+-..-+|+.....+-.. -|+=+.|+|.++.|.-...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46788888888 778887777663 4445567888766543333 3455677888888876543
No 252
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=32.86 E-value=7 Score=38.39 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=52.8
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g 226 (354)
++++++|++..++-.+|..+++.+-.+..+.+.... ......+++|+|+-.-.-..|+..||+..+..
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 789999999999999999999988776666555443 33345678999987777777777788866653
No 253
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=32.55 E-value=1.6e+02 Score=23.94 Aligned_cols=56 Identities=11% Similarity=0.283 Sum_probs=39.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHH
Q 036905 55 IPFTVNLASTIDNWKLHQIFSK-FG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIE 112 (354)
Q Consensus 55 ~lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~ 112 (354)
+-|+--++...+..+|++.++. |+ .|..|..+..+.|.- =|||.+....+|...-.
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCce--EEEEEECCCCcHHHHHH
Confidence 4445556788999999999996 66 477777666555433 48999977776554443
No 254
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.14 E-value=13 Score=35.46 Aligned_cols=73 Identities=7% Similarity=-0.157 Sum_probs=57.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
.+.|+..|+...+++++.=+|.-||-|..+.+.+-. .|..+-.+||+-.+ ++|..+|..+....+.+.++++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~ 77 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKA 77 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhh
Confidence 456788999999999999999999999888776655 56777889998876 46777887777777777666633
No 255
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.80 E-value=35 Score=32.15 Aligned_cols=68 Identities=6% Similarity=0.114 Sum_probs=48.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCC-eeEEEEEeCCC---CCceeEEEEEeecHHHHHHHHHHhhhCcc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGD-IQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEKLYAATV 119 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~v~~d~~---g~skg~aFV~F~~~e~A~~Ai~~lng~~i 119 (354)
....|.|.+||+..++.+|.+....|-. +....+..... ..-.+.|||.|...++........+|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3467899999999999999998887654 33233332111 12257899999999998888887777654
No 256
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=31.76 E-value=35 Score=28.78 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=48.0
Q ss_pred eEEEcCCCCCC-----cHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCe-EEEecc
Q 036905 55 IPFTVNLASTI-----DNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGM-ELYAPS 128 (354)
Q Consensus 55 ~lfV~nLp~~~-----te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~-~i~~~~ 128 (354)
.+.+.+++..+ +.....++|..|-+..-.+++ ++.+.--|.|.+.+.|..|...+++..+.|+ .+...+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-----RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-----HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 45555665442 233455666666555444444 3456677889999999999999999999988 665555
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 87 aQ~ 89 (193)
T KOG4019|consen 87 AQP 89 (193)
T ss_pred ccC
Confidence 443
No 257
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=31.44 E-value=36 Score=20.47 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=10.4
Q ss_pred CCCcHHHHHHHHhhcCC
Q 036905 63 STIDNWKLHQIFSKFGD 79 (354)
Q Consensus 63 ~~~te~~L~~~F~~~G~ 79 (354)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36899999999987653
No 258
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.81 E-value=10 Score=36.25 Aligned_cols=78 Identities=9% Similarity=-0.060 Sum_probs=61.5
Q ss_pred eEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
..++..++..++++++.-+|..||.|..+...+-. .|..+-.+||+-.+ .+|..+|..+.-..+.|..++|+++....
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 45677888899999999999999999888776554 45556678888765 56778888887888889999998886543
No 259
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=30.63 E-value=1.9e+02 Score=20.21 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=31.3
Q ss_pred HHHHHHHhhcCCeeEEEEEeCCCCC-ceeEEEEEeecHHHHHHHHHHhhh
Q 036905 68 WKLHQIFSKFGDIQSSKVVVSQDGK-SKGYGFVQYSTQESALNAIEKLYA 116 (354)
Q Consensus 68 ~~L~~~F~~~G~i~~v~v~~d~~g~-skg~aFV~F~~~e~A~~Ai~~lng 116 (354)
.++.+.+..+| +...++. |. ..++.|+-+.+.+.++++.+.+..
T Consensus 37 ~~~~~~~~~~G-a~~~~~s----GsG~G~~v~~l~~~~~~~~~v~~~l~~ 81 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS----GSGGGPTVFALCKDEDDAERVAEALRE 81 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE----TTSSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC----CCCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 56777888898 5545553 32 146788888899999999887754
No 260
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=29.07 E-value=23 Score=33.57 Aligned_cols=63 Identities=11% Similarity=0.006 Sum_probs=52.0
Q ss_pred CCCCCeEEEcCCCCCCcHH--------HHHHHHhh--cCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHH
Q 036905 50 ATPTFIPFTVNLASTIDNW--------KLHQIFSK--FGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIE 112 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~--------~L~~~F~~--~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~ 112 (354)
....+.+|+.+.+...+.+ ++...|.. .+.+..+...++. +..++|--|++|...+.++++..
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3446788899888776665 89999998 6778888888887 78889999999999999998773
No 261
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=28.79 E-value=2e+02 Score=25.93 Aligned_cols=169 Identities=20% Similarity=0.336 Sum_probs=87.1
Q ss_pred CCCcHHHHHHHHhhc-CC--eeEEEEEeCCCCCceeEEEEEeecHHH----HHHHHHHhhhCccC--Ce--EEEeccccc
Q 036905 63 STIDNWKLHQIFSKF-GD--IQSSKVVVSQDGKSKGYGFVQYSTQES----ALNAIEKLYAATVE--GM--ELYAPSLRA 131 (354)
Q Consensus 63 ~~~te~~L~~~F~~~-G~--i~~v~v~~d~~g~skg~aFV~F~~~e~----A~~Ai~~lng~~i~--g~--~i~~~~~~~ 131 (354)
.++++-+|.+-+... -+ ..+|+|... ..-||.|+-+-. .++.+..|+|..+. |- .+.|+....
T Consensus 47 ksisnwdlmerlk~aid~~q~dsckires------nid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~ea 120 (445)
T KOG2891|consen 47 KSISNWDLMERLKGAIDNHQFDSCKIRES------NIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEA 120 (445)
T ss_pred cccchHHHHHHHHhhcccccccceeeccc------ccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhh
Confidence 567888887777642 12 346666432 367899975443 44555556655432 10 000110000
Q ss_pred cc-cccccccccccccCCC-chhhhhcCCceEEEeCCCCc------------cCHHHHHHHhhcCCCeeEEEEeeC----
Q 036905 132 GR-IQESASFNNLYVKNLD-DDVTEEILDKNLYVKNINDD------------VDEIELKQYFSQCGIISSVKIMRT---- 193 (354)
Q Consensus 132 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~nl~~~------------~t~~~L~~~F~~~G~v~~v~i~~~---- 193 (354)
.- -.....|...+.+.-+ ..........|||+.+||-. -+++.|+..|+.||.|..|.|+.-
T Consensus 121 kidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr 200 (445)
T KOG2891|consen 121 KIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLR 200 (445)
T ss_pred cCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhH
Confidence 00 0111122222221111 11111223367888887753 356789999999999998887531
Q ss_pred -C-CCCe-----eeEEE---------EEeCCHHHHHHHHHHhCCcee----CC----eeEEEEeccCc
Q 036905 194 -N-RGIS-----KGFGF---------VCFSNPDEANRAINTLNGILF----HQ----KPLYVAIAQTK 237 (354)
Q Consensus 194 -~-~g~~-----kg~af---------V~f~~~~~A~~Ai~~l~g~~i----~g----~~l~v~~a~~~ 237 (354)
. +|+. +||+| |.|-..-.-..|+..|.|..+ +| -.++|.|...+
T Consensus 201 ~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 201 EEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 1 3332 44543 444444555667777777654 23 35667666544
No 262
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=27.98 E-value=2.1e+02 Score=19.87 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCeeEEEEEeCC-C-CCceeEEEEEee-cHHHHHHHHHHhhh
Q 036905 67 NWKLHQIFSKFGDIQSSKVVVSQ-D-GKSKGYGFVQYS-TQESALNAIEKLYA 116 (354)
Q Consensus 67 e~~L~~~F~~~G~i~~v~v~~d~-~-g~skg~aFV~F~-~~e~A~~Ai~~lng 116 (354)
-.++.+.|+.+|- .=.+|...+ . ....-+-||+++ +.+..++|++.|..
T Consensus 14 L~~vL~~f~~~~i-Nlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGV-NLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCC-cEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 4566777777763 223455555 2 233345668887 55566778877754
No 263
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=27.98 E-value=2.4e+02 Score=20.50 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHhh-cCC----eeEEEEEeCC-CCCceeEEEEEeecHHHHHHH
Q 036905 63 STIDNWKLHQIFSK-FGD----IQSSKVVVSQ-DGKSKGYGFVQYSTQESALNA 110 (354)
Q Consensus 63 ~~~te~~L~~~F~~-~G~----i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~A 110 (354)
...+.++|++.+.. |+. |.=..+.+.- .+.+.|||.| |.+.+.+++.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 45667788887774 443 2222333333 5677888888 7777776543
No 264
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=27.94 E-value=1.9e+02 Score=19.35 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=32.3
Q ss_pred CHHHHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce
Q 036905 171 DEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL 223 (354)
Q Consensus 171 t~~~L~~~F~~~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~ 223 (354)
.-.++.++|.+.| .|.++.+....+ ++.-.+.+.+.+.|.+++.+ +|..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE---FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 3467778887776 678887655422 35556667777778888775 4544
No 265
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=26.48 E-value=1.7e+02 Score=23.45 Aligned_cols=46 Identities=17% Similarity=0.387 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHhh-cC-CeeEEEEE----eCC-CCCceeEEEEEeecHHHHHHH
Q 036905 64 TIDNWKLHQIFSK-FG-DIQSSKVV----VSQ-DGKSKGYGFVQYSTQESALNA 110 (354)
Q Consensus 64 ~~te~~L~~~F~~-~G-~i~~v~v~----~d~-~g~skg~aFV~F~~~e~A~~A 110 (354)
..+-.+|++-+.. |+ .=.+.-++ +.- .|.+.|||.| |.|.+.|.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 5677888888874 66 21222122 222 4678888888 7777766553
No 266
>PF14893 PNMA: PNMA
Probab=26.30 E-value=66 Score=30.11 Aligned_cols=54 Identities=6% Similarity=0.198 Sum_probs=33.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhh-cCCeeEEEEEeCC--CCCceeEEEEEeecH
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSK-FGDIQSSKVVVSQ--DGKSKGYGFVQYSTQ 104 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~v~~d~--~g~skg~aFV~F~~~ 104 (354)
+..+.|.|.++|.++++++|.+.+.. .-..-.++|.... .....--++|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 45678999999999999999998764 3233333343221 111234677877643
No 267
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.83 E-value=67 Score=28.31 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=31.0
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEE
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSS 83 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v 83 (354)
.+.....++|+-|+|...|++-|..+.+.+|-+.++
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 566677899999999999999999999999866543
No 268
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.48 E-value=1.4e+02 Score=20.72 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=24.3
Q ss_pred eEEEEEeecHHHHHHHHHHhhhCccCCeEE
Q 036905 95 GYGFVQYSTQESALNAIEKLYAATVEGMEL 124 (354)
Q Consensus 95 g~aFV~F~~~e~A~~Ai~~lng~~i~g~~i 124 (354)
.+.+|.|.+..+|.+|-+.|....+..+-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 378999999999999999988776654433
No 269
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=23.93 E-value=2.5e+02 Score=19.29 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=32.5
Q ss_pred cHHHHHHHHhhcC-CeeEEEEEeCCCCCceeEEEEEeec---HHHHHHHHHHhhh
Q 036905 66 DNWKLHQIFSKFG-DIQSSKVVVSQDGKSKGYGFVQYST---QESALNAIEKLYA 116 (354)
Q Consensus 66 te~~L~~~F~~~G-~i~~v~v~~d~~g~skg~aFV~F~~---~e~A~~Ai~~lng 116 (354)
.-.++.+.|+.+| ++.++.-.........-.-||++.. ....+.+++.|..
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3467888888886 4666643333333445567888874 5666777777654
No 270
>PRK11901 hypothetical protein; Reviewed
Probab=23.09 E-value=2.4e+02 Score=26.31 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=38.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEE--EEeCCHHHHHHHHHHhCCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGF--VCFSNPDEANRAINTLNGI 222 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~af--V~f~~~~~A~~Ai~~l~g~ 222 (354)
.+|-|-. ..+++.|..|..+++ +..+++.... +|+.. |.. =.|.+.++|..|+..|-..
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 4444444 346788888888776 3455555543 55543 332 2579999999999988553
No 271
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=22.84 E-value=2.7e+02 Score=19.42 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcC-CeeEEEEEeCCCCCceeEEEEEeec---HHHHHHHHHHhhh
Q 036905 67 NWKLHQIFSKFG-DIQSSKVVVSQDGKSKGYGFVQYST---QESALNAIEKLYA 116 (354)
Q Consensus 67 e~~L~~~F~~~G-~i~~v~v~~d~~g~skg~aFV~F~~---~e~A~~Ai~~lng 116 (354)
-.++.+.|+.+| +|.++.......+...-.-||+++. .++...+++.|..
T Consensus 15 L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 15 LYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 467788888886 5777755444333333456677773 5667778877765
No 272
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.66 E-value=2.3e+02 Score=18.51 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=40.5
Q ss_pred eEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCH----HHHHHHHHH
Q 036905 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNP----DEANRAINT 218 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~----~~A~~Ai~~ 218 (354)
++.|.|+.-.--...|.+.+...-.|.++.+-.. .+..-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----CCEEEEEEecCCCCHHHHHHHHHH
Confidence 4678888888788889999998888988888765 34688888644 555666654
No 273
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.26 E-value=4e+02 Score=21.09 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=45.4
Q ss_pred ceEEEeCCCCc---cCHHHHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 159 KNLYVKNINDD---VDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 159 ~~l~v~nl~~~---~t~~~L~~~F~~~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
..|.|+..... .+-+.+.+..+.-| .++++..-.+ ...|+|++.++-.+|.+.|....=++-.|.+..+
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~-------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND-------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC-------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 35566655333 46677888888776 3444444332 5899999999999998877665544555555555
Q ss_pred c
Q 036905 235 Q 235 (354)
Q Consensus 235 ~ 235 (354)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 4
No 274
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=21.60 E-value=2.6e+02 Score=27.90 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=36.7
Q ss_pred HHHHHHHhh----cCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 036905 172 EIELKQYFS----QCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220 (354)
Q Consensus 172 ~~~L~~~F~----~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 220 (354)
.-+|..+|- .+|.|+++.+...+.-..+...++.|.+.++|..++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 346777664 6788999877665543445678899999999999988763
No 275
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=21.48 E-value=2.4e+02 Score=28.10 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=38.9
Q ss_pred HHHHHHHHh----hcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhh
Q 036905 67 NWKLHQIFS----KFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA 116 (354)
Q Consensus 67 e~~L~~~F~----~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng 116 (354)
.-+|..+|. .+|-|.++.+...+.-+.+...++.|.+.++|..++..+..
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 446777776 57889988888777555567889999999999999987654
No 276
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=21.19 E-value=2.6e+02 Score=19.68 Aligned_cols=38 Identities=34% Similarity=0.463 Sum_probs=27.1
Q ss_pred HHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCc
Q 036905 73 IFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118 (354)
Q Consensus 73 ~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~ 118 (354)
-+.+||.|.-+. +...|+.+ |-+.++++..++.|....
T Consensus 16 ~L~kfG~i~Y~S-------kk~kYvvl-Yvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 16 QLRKFGDIHYVS-------KKMKYVVL-YVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred hHhhcccEEEEE-------CCccEEEE-EECHHHHHHHHHHHhcCC
Confidence 467899987542 12346654 889999999999887654
No 277
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.61 E-value=44 Score=31.75 Aligned_cols=59 Identities=22% Similarity=0.213 Sum_probs=47.3
Q ss_pred ceEEEeCCCCccCH--------HHHHHHhhc--CCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHH
Q 036905 159 KNLYVKNINDDVDE--------IELKQYFSQ--CGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAIN 217 (354)
Q Consensus 159 ~~l~v~nl~~~~t~--------~~L~~~F~~--~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~ 217 (354)
+.+|+.+.+...+. +++...|.. ++.+..+...++. +..++|..|++|+..+.|+++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 56777777665444 489999998 6777888888877 66788999999999999999974
No 278
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.48 E-value=2.7e+02 Score=22.70 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=27.3
Q ss_pred eeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc
Q 036905 185 ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222 (354)
Q Consensus 185 v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~ 222 (354)
|.+|.++.. .+||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 666666654 5899999999889999999888764
No 279
>PRK11901 hypothetical protein; Reviewed
Probab=20.45 E-value=1.9e+02 Score=26.93 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=40.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEE--EEeecHHHHHHHHHHhhh
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGF--VQYSTQESALNAIEKLYA 116 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aF--V~F~~~e~A~~Ai~~lng 116 (354)
..++|-|-.+ -+++.|.++..+++ +..++++... +|+. .|.. =.|.+.++|+.|+..|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 3455655544 56888888888876 4556666655 5543 3443 368999999999998743
Done!