Query 036905
Match_columns 354
No_of_seqs 384 out of 2250
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 10:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.7E-38 9.1E-43 276.7 21.5 176 49-243 11-187 (213)
2 3smz_A Protein raver-1, ribonu 100.0 2.9E-37 1E-41 281.7 26.4 222 13-251 54-278 (284)
3 3md3_A Nuclear and cytoplasmic 100.0 2.8E-36 9.6E-41 252.5 21.5 165 54-236 1-166 (166)
4 1fxl_A Paraneoplastic encephal 100.0 3.4E-35 1.2E-39 246.2 22.4 163 52-234 1-167 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 1.7E-35 5.8E-40 254.9 21.0 179 48-242 8-188 (196)
6 1b7f_A Protein (SXL-lethal pro 100.0 1.9E-35 6.3E-40 248.3 20.2 163 52-234 2-168 (168)
7 2ghp_A U4/U6 snRNA-associated 100.0 1.7E-35 5.9E-40 271.1 20.9 217 5-237 71-291 (292)
8 2qfj_A FBP-interacting repress 100.0 2.4E-35 8.2E-40 257.9 19.8 177 52-237 27-205 (216)
9 3nmr_A Cugbp ELAV-like family 100.0 5.4E-35 1.9E-39 247.0 21.0 165 52-235 2-175 (175)
10 2cjk_A Nuclear polyadenylated 100.0 2.2E-35 7.5E-40 247.7 13.0 163 52-237 2-166 (167)
11 2yh0_A Splicing factor U2AF 65 100.0 1.8E-33 6.2E-38 242.6 19.4 181 52-239 3-196 (198)
12 3tyt_A Heterogeneous nuclear r 100.0 1.8E-33 6.3E-38 244.1 18.0 178 52-234 3-204 (205)
13 1fje_B Nucleolin RBD12, protei 100.0 6E-34 2.1E-38 241.0 14.2 167 48-237 8-174 (175)
14 2g4b_A Splicing factor U2AF 65 100.0 4.8E-33 1.7E-37 234.5 18.8 158 52-235 3-172 (172)
15 3pgw_A U1-A; protein-RNA compl 100.0 1.1E-32 3.7E-37 251.2 20.9 182 49-236 5-282 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 4.2E-32 1.4E-36 239.9 20.1 188 42-237 23-228 (229)
17 3smz_A Protein raver-1, ribonu 100.0 3.8E-31 1.3E-35 241.2 20.9 157 51-239 20-177 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-31 6.1E-36 244.3 17.9 165 47-240 35-200 (292)
19 3sde_A Paraspeckle component 1 100.0 2.8E-31 9.5E-36 239.3 18.8 160 49-239 18-181 (261)
20 1qm9_A Polypyrimidine tract-bi 100.0 8.5E-32 2.9E-36 232.4 14.7 177 53-237 3-197 (198)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.6E-24 5.6E-29 180.1 16.2 149 82-239 2-152 (158)
22 4f25_A Polyadenylate-binding p 99.9 4.8E-23 1.6E-27 161.9 10.0 110 52-174 4-113 (115)
23 2i2y_A Fusion protein consists 99.9 2.2E-22 7.5E-27 165.7 14.0 139 91-238 10-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 2.3E-21 7.8E-26 148.0 12.0 78 159-236 20-98 (99)
25 4fxv_A ELAV-like protein 1; RN 99.8 4.5E-21 1.5E-25 146.3 10.9 79 52-130 18-97 (99)
26 3s8s_A Histone-lysine N-methyl 99.8 1.7E-20 5.8E-25 145.9 13.3 88 158-245 6-94 (110)
27 2kn4_A Immunoglobulin G-bindin 99.8 2.3E-20 7.8E-25 154.9 13.5 128 5-133 3-151 (158)
28 3s8s_A Histone-lysine N-methyl 99.8 2.4E-20 8.2E-25 145.0 11.1 82 51-132 4-86 (110)
29 2lxi_A RNA-binding protein 10; 99.8 8.4E-21 2.9E-25 142.5 6.1 81 159-239 2-85 (91)
30 4f25_A Polyadenylate-binding p 99.8 6.2E-20 2.1E-24 144.0 11.1 84 159-243 6-89 (115)
31 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.4E-20 1.8E-24 153.8 11.3 140 99-241 11-156 (165)
32 3md3_A Nuclear and cytoplasmic 99.8 2.7E-19 9.2E-24 148.9 15.3 127 4-130 29-165 (166)
33 2lkz_A RNA-binding protein 5; 99.8 2.1E-20 7.3E-25 141.2 7.6 79 158-236 9-94 (95)
34 3md1_A Nuclear and cytoplasmic 99.8 1.9E-19 6.5E-24 132.6 11.9 80 159-238 2-82 (83)
35 3q2s_C Cleavage and polyadenyl 99.8 5.9E-20 2E-24 161.6 9.5 86 157-242 67-155 (229)
36 2lea_A Serine/arginine-rich sp 99.8 2.8E-20 9.6E-25 150.2 6.7 124 95-239 5-129 (135)
37 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.9E-19 1E-23 132.8 11.7 80 158-237 6-86 (87)
38 2lxi_A RNA-binding protein 10; 99.8 3E-20 1E-24 139.5 6.2 79 53-131 1-82 (91)
39 2do4_A Squamous cell carcinoma 99.8 3.5E-19 1.2E-23 136.1 12.2 83 157-239 16-98 (100)
40 2x1f_A MRNA 3'-END-processing 99.8 5.5E-19 1.9E-23 134.0 12.3 86 158-243 2-88 (96)
41 3p5t_L Cleavage and polyadenyl 99.8 6.9E-20 2.4E-24 137.2 6.9 81 159-239 2-85 (90)
42 3md1_A Nuclear and cytoplasmic 99.8 3.6E-19 1.2E-23 131.1 10.6 79 53-131 1-80 (83)
43 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.2E-19 1.1E-23 132.6 10.3 81 51-131 4-85 (87)
44 2lkz_A RNA-binding protein 5; 99.8 1E-19 3.6E-24 137.4 7.7 80 51-130 7-93 (95)
45 3ns6_A Eukaryotic translation 99.8 8.6E-20 3E-24 139.5 7.3 82 158-239 6-95 (100)
46 3p5t_L Cleavage and polyadenyl 99.8 1.3E-19 4.5E-24 135.7 8.1 78 54-131 2-82 (90)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.1E-19 7.1E-24 133.0 9.1 81 49-129 3-84 (85)
48 1whw_A Hypothetical protein ri 99.8 3.8E-19 1.3E-23 135.6 10.4 85 49-133 4-89 (99)
49 2dgo_A Cytotoxic granule-assoc 99.8 9.5E-19 3.2E-23 137.2 12.9 87 47-133 9-96 (115)
50 2cqc_A Arginine/serine-rich sp 99.8 5.6E-19 1.9E-23 133.5 11.2 84 47-130 9-93 (95)
51 2dnh_A Bruno-like 5, RNA bindi 99.8 5.5E-19 1.9E-23 136.2 11.3 84 157-240 14-100 (105)
52 2cq0_A Eukaryotic translation 99.8 4.8E-19 1.6E-23 136.1 10.8 85 156-240 13-98 (103)
53 2do4_A Squamous cell carcinoma 99.8 8.3E-19 2.8E-23 134.0 12.1 85 47-131 11-95 (100)
54 3lqv_A PRE-mRNA branch site pr 99.8 1.8E-19 6E-24 141.4 8.4 105 50-184 5-109 (115)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.1E-19 1.7E-23 130.9 10.4 78 158-235 7-85 (85)
56 2x1f_A MRNA 3'-END-processing 99.8 3.7E-19 1.3E-23 134.9 9.8 82 52-133 1-83 (96)
57 2d9p_A Polyadenylate-binding p 99.8 5.4E-19 1.9E-23 135.8 10.7 83 157-240 14-96 (103)
58 1whw_A Hypothetical protein ri 99.8 5.2E-19 1.8E-23 134.8 10.4 83 158-240 8-91 (99)
59 2dnz_A Probable RNA-binding pr 99.8 6.8E-19 2.3E-23 133.1 10.9 82 51-132 3-85 (95)
60 2cpz_A CUG triplet repeat RNA- 99.8 5.1E-19 1.7E-23 138.8 10.5 84 157-240 24-108 (115)
61 2dnz_A Probable RNA-binding pr 99.8 5.3E-19 1.8E-23 133.7 10.2 83 158-240 5-88 (95)
62 1p27_B RNA-binding protein 8A; 99.8 5.5E-19 1.9E-23 136.4 10.4 81 158-238 23-104 (106)
63 3n9u_C Cleavage and polyadenyl 99.8 1.1E-18 3.7E-23 144.2 12.8 85 158-242 55-142 (156)
64 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-18 3.7E-23 136.9 12.2 84 157-240 14-98 (115)
65 2cpz_A CUG triplet repeat RNA- 99.8 9.5E-19 3.3E-23 137.2 11.7 85 48-132 20-105 (115)
66 2ywk_A Putative RNA-binding pr 99.8 1E-18 3.4E-23 132.1 11.4 80 157-236 15-94 (95)
67 3r27_A HnRNP L, heterogeneous 99.8 4.5E-19 1.5E-23 134.1 9.4 78 156-238 19-98 (100)
68 2cqc_A Arginine/serine-rich sp 99.8 1.2E-18 3.9E-23 131.8 11.7 79 158-236 15-94 (95)
69 2ywk_A Putative RNA-binding pr 99.8 6.2E-19 2.1E-23 133.3 10.0 82 49-130 12-93 (95)
70 2dgs_A DAZ-associated protein 99.8 6.6E-19 2.3E-23 134.3 10.1 83 157-240 9-92 (99)
71 2cq0_A Eukaryotic translation 99.8 6.7E-19 2.3E-23 135.2 10.2 85 48-132 10-95 (103)
72 2e5h_A Zinc finger CCHC-type a 99.8 5.8E-19 2E-23 133.2 9.7 82 48-129 11-93 (94)
73 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.4E-19 1.5E-23 136.0 9.1 87 47-133 6-93 (102)
74 2qfj_A FBP-interacting repress 99.8 2.9E-18 1E-22 149.1 15.4 127 5-131 58-204 (216)
75 2dgs_A DAZ-associated protein 99.8 8.8E-19 3E-23 133.6 10.6 83 48-131 5-88 (99)
76 1x5s_A Cold-inducible RNA-bind 99.8 6.9E-19 2.3E-23 134.9 9.9 86 47-132 6-92 (102)
77 2g4b_A Splicing factor U2AF 65 99.8 6.7E-19 2.3E-23 147.6 10.8 118 12-129 47-171 (172)
78 1x5u_A Splicing factor 3B subu 99.8 5.9E-19 2E-23 136.0 9.6 85 156-240 13-98 (105)
79 2dnh_A Bruno-like 5, RNA bindi 99.8 1.4E-18 4.8E-23 133.9 11.7 85 49-133 11-98 (105)
80 1p1t_A Cleavage stimulation fa 99.8 9.8E-19 3.3E-23 134.5 10.8 85 159-243 9-94 (104)
81 2dnm_A SRP46 splicing factor; 99.8 4.3E-19 1.5E-23 136.3 8.7 87 47-133 7-94 (103)
82 2fy1_A RNA-binding motif prote 99.8 7.1E-19 2.4E-23 138.1 10.0 82 157-238 6-87 (116)
83 2cjk_A Nuclear polyadenylated 99.8 3E-19 1E-23 149.1 8.3 125 5-130 33-164 (167)
84 2la6_A RNA-binding protein FUS 99.8 1.3E-18 4.4E-23 132.7 11.0 82 48-129 8-98 (99)
85 1x5t_A Splicing factor 3B subu 99.8 5.1E-19 1.7E-23 134.1 8.6 83 158-240 5-89 (96)
86 1b7f_A Protein (SXL-lethal pro 99.8 3.3E-18 1.1E-22 142.7 14.4 124 5-128 33-167 (168)
87 2la6_A RNA-binding protein FUS 99.8 1.5E-18 5.1E-23 132.3 11.2 78 158-235 13-99 (99)
88 2jrs_A RNA-binding protein 39; 99.8 1.1E-18 3.7E-23 135.3 10.5 82 157-238 25-107 (108)
89 1fxl_A Paraneoplastic encephal 99.8 3E-18 1E-22 142.7 14.0 124 5-128 32-166 (167)
90 2wbr_A GW182, gawky, LD47780P; 99.8 4.7E-19 1.6E-23 129.4 7.8 72 159-235 8-79 (89)
91 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.9E-19 1.7E-23 135.7 8.5 84 157-240 11-95 (102)
92 1oo0_B CG8781-PA, drosophila Y 99.8 8.4E-19 2.9E-23 136.4 9.9 83 158-240 26-109 (110)
93 2do0_A HnRNP M, heterogeneous 99.8 1.9E-18 6.4E-23 135.2 11.9 82 157-238 14-95 (114)
94 2d9p_A Polyadenylate-binding p 99.8 1.5E-18 5E-23 133.3 11.0 85 47-132 9-93 (103)
95 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-18 4E-23 131.5 10.3 79 157-235 15-94 (94)
96 3ns6_A Eukaryotic translation 99.8 2.3E-19 8E-24 137.1 6.4 81 51-131 4-92 (100)
97 1x5u_A Splicing factor 3B subu 99.8 8.9E-19 3E-23 135.0 9.7 86 47-132 9-95 (105)
98 2div_A TRNA selenocysteine ass 99.8 7.8E-19 2.7E-23 133.8 9.3 83 49-131 5-93 (99)
99 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.8E-18 6.1E-23 132.9 11.2 84 156-240 13-96 (103)
100 1x4e_A RNA binding motif, sing 99.8 4.4E-19 1.5E-23 131.3 7.5 79 51-129 3-82 (85)
101 1p27_B RNA-binding protein 8A; 99.8 1.4E-18 4.6E-23 134.2 10.4 83 49-131 19-102 (106)
102 3ucg_A Polyadenylate-binding p 99.8 2E-18 6.9E-23 128.8 11.0 78 159-237 7-85 (89)
103 2kxn_B Transformer-2 protein h 99.8 9.8E-19 3.4E-23 139.9 9.8 86 47-132 40-126 (129)
104 1x5s_A Cold-inducible RNA-bind 99.8 6E-19 2E-23 135.2 8.2 83 158-240 12-95 (102)
105 2cq3_A RNA-binding protein 9; 99.8 2.2E-18 7.6E-23 132.3 11.4 83 157-240 14-96 (103)
106 4a8x_A RNA-binding protein wit 99.8 9.4E-19 3.2E-23 130.3 9.0 81 159-239 5-87 (88)
107 2dgp_A Bruno-like 4, RNA bindi 99.8 1.1E-18 3.7E-23 134.8 9.6 87 47-133 7-97 (106)
108 4f02_A Polyadenylate-binding p 99.8 1.5E-18 5.3E-23 151.1 11.8 127 4-131 44-180 (213)
109 2jrs_A RNA-binding protein 39; 99.8 1.3E-18 4.5E-23 134.8 10.1 84 48-131 21-105 (108)
110 2do0_A HnRNP M, heterogeneous 99.8 2.9E-18 1E-22 134.1 12.2 83 49-131 11-93 (114)
111 2fy1_A RNA-binding motif prote 99.8 1.3E-18 4.4E-23 136.6 10.1 83 50-132 4-86 (116)
112 2dnm_A SRP46 splicing factor; 99.8 8.1E-19 2.8E-23 134.8 8.8 83 157-239 12-95 (103)
113 1x5t_A Splicing factor 3B subu 99.8 7.3E-19 2.5E-23 133.2 8.4 81 51-131 3-85 (96)
114 3ulh_A THO complex subunit 4; 99.8 2.8E-18 9.5E-23 132.7 11.8 79 157-235 28-106 (107)
115 3ulh_A THO complex subunit 4; 99.8 1.9E-18 6.6E-23 133.6 10.8 83 48-130 24-106 (107)
116 2cpf_A RNA binding motif prote 99.8 1.6E-18 5.4E-23 131.9 10.2 82 158-239 5-90 (98)
117 2dhg_A TRNA selenocysteine ass 99.8 8.1E-19 2.8E-23 135.0 8.7 84 157-240 8-93 (104)
118 2dhg_A TRNA selenocysteine ass 99.8 1.8E-18 6.3E-23 133.0 10.7 83 49-131 5-89 (104)
119 1s79_A Lupus LA protein; RRM, 99.8 5.8E-19 2E-23 135.5 7.8 82 49-131 7-88 (103)
120 2cph_A RNA binding motif prote 99.8 1.4E-18 4.9E-23 134.3 10.0 85 156-240 13-100 (107)
121 3nmr_A Cugbp ELAV-like family 99.8 3.2E-18 1.1E-22 143.7 13.0 126 4-129 32-174 (175)
122 1x4h_A RNA-binding protein 28; 99.8 1.4E-18 4.8E-23 135.2 10.0 84 157-240 14-104 (111)
123 1s79_A Lupus LA protein; RRM, 99.8 8.3E-19 2.9E-23 134.6 8.5 79 159-238 12-90 (103)
124 2dgv_A HnRNP M, heterogeneous 99.8 2.5E-18 8.7E-23 129.1 10.9 83 49-132 4-86 (92)
125 1sjq_A Polypyrimidine tract-bi 99.8 6.7E-19 2.3E-23 134.5 7.7 78 158-240 16-95 (105)
126 1u6f_A Tcubp1, RNA-binding pro 99.8 2E-18 6.9E-23 140.0 11.1 85 156-240 40-125 (139)
127 1x4h_A RNA-binding protein 28; 99.8 2.4E-18 8.2E-23 133.9 11.0 84 48-131 10-100 (111)
128 2cph_A RNA binding motif prote 99.8 2E-18 6.7E-23 133.5 10.3 86 48-133 10-98 (107)
129 3s7r_A Heterogeneous nuclear r 99.8 2.2E-18 7.5E-23 128.1 10.1 80 48-128 6-86 (87)
130 3n9u_C Cleavage and polyadenyl 99.8 1.6E-18 5.5E-23 143.2 10.3 81 51-131 53-136 (156)
131 2dgx_A KIAA0430 protein; RRM d 99.8 1.8E-18 6.2E-23 131.1 9.6 79 159-239 10-92 (96)
132 2dng_A Eukaryotic translation 99.8 2.8E-18 9.6E-23 131.8 10.7 81 158-240 15-96 (103)
133 2hvz_A Splicing factor, argini 99.8 1.4E-18 4.7E-23 133.0 8.9 100 54-167 1-100 (101)
134 2kxn_B Transformer-2 protein h 99.8 9.9E-19 3.4E-23 139.9 8.4 84 156-239 44-128 (129)
135 1l3k_A Heterogeneous nuclear r 99.8 3.9E-18 1.3E-22 146.1 12.7 126 5-131 43-182 (196)
136 2cq3_A RNA-binding protein 9; 99.8 4.2E-18 1.5E-22 130.7 11.6 85 47-132 9-93 (103)
137 1sjq_A Polypyrimidine tract-bi 99.8 2E-18 6.9E-23 131.8 9.7 79 50-133 13-93 (105)
138 2cpf_A RNA binding motif prote 99.8 2.7E-18 9.2E-23 130.6 10.4 82 51-132 3-88 (98)
139 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-18 4.3E-23 127.2 8.0 74 52-130 6-79 (89)
140 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.9E-18 1.7E-22 130.4 11.8 83 48-131 10-92 (103)
141 2cq4_A RNA binding motif prote 99.8 1.6E-18 5.4E-23 135.7 9.1 82 158-240 25-107 (114)
142 2dgv_A HnRNP M, heterogeneous 99.8 2.2E-18 7.7E-23 129.4 9.5 81 158-239 8-88 (92)
143 2khc_A Testis-specific RNP-typ 99.8 9.4E-19 3.2E-23 137.9 7.8 82 48-129 35-117 (118)
144 2dgp_A Bruno-like 4, RNA bindi 99.8 1.3E-18 4.4E-23 134.3 8.4 84 157-240 12-99 (106)
145 3s7r_A Heterogeneous nuclear r 99.8 6.1E-18 2.1E-22 125.6 11.8 78 156-234 9-87 (87)
146 2khc_A Testis-specific RNP-typ 99.8 1.8E-18 6.3E-23 136.2 9.4 80 156-235 38-118 (118)
147 2cpe_A RNA-binding protein EWS 99.8 1.8E-18 6E-23 135.2 9.2 85 156-240 13-106 (113)
148 2div_A TRNA selenocysteine ass 99.8 2.4E-18 8.1E-23 131.1 9.7 82 157-238 8-95 (99)
149 2dgw_A Probable RNA-binding pr 99.8 4.4E-18 1.5E-22 127.6 11.0 79 158-238 10-88 (91)
150 2dh8_A DAZ-associated protein 99.8 2.8E-18 9.6E-23 132.2 10.1 83 48-131 11-94 (105)
151 1u6f_A Tcubp1, RNA-binding pro 99.8 3.4E-18 1.2E-22 138.7 10.9 85 48-132 37-122 (139)
152 1oo0_B CG8781-PA, drosophila Y 99.8 2.1E-18 7.2E-23 134.1 9.3 84 48-131 21-105 (110)
153 3ucg_A Polyadenylate-binding p 99.8 2.5E-18 8.5E-23 128.3 9.2 78 53-131 6-84 (89)
154 4a8x_A RNA-binding protein wit 99.8 1.7E-18 5.6E-23 128.9 8.1 80 52-131 3-84 (88)
155 2err_A Ataxin-2-binding protei 99.8 2.3E-18 7.7E-23 133.7 9.1 81 156-237 27-107 (109)
156 2dng_A Eukaryotic translation 99.8 4.5E-18 1.5E-22 130.6 10.6 82 49-132 11-93 (103)
157 2yh0_A Splicing factor U2AF 65 99.8 3.8E-18 1.3E-22 146.4 11.2 120 12-131 47-193 (198)
158 1wi8_A EIF-4B, eukaryotic tran 99.8 2.9E-18 9.9E-23 131.9 9.2 82 157-240 14-97 (104)
159 3r27_A HnRNP L, heterogeneous 99.8 6E-18 2E-22 127.9 10.7 78 49-131 17-96 (100)
160 2cpy_A RNA-binding protein 12; 99.8 1.9E-18 6.5E-23 135.3 8.3 85 157-242 14-99 (114)
161 2cqp_A RNA-binding protein 12; 99.8 2.1E-18 7.3E-23 131.1 8.4 80 158-237 15-95 (98)
162 2mss_A Protein (musashi1); RNA 99.8 1.4E-18 4.7E-23 125.4 6.9 74 160-234 1-75 (75)
163 1x4d_A Matrin 3; structural ge 99.8 1.6E-18 5.5E-23 132.2 7.6 77 157-238 14-93 (102)
164 3pgw_S U1-70K; protein-RNA com 99.8 2.9E-19 9.9E-24 171.4 4.3 165 70-239 9-184 (437)
165 2cpe_A RNA-binding protein EWS 99.8 3.4E-18 1.2E-22 133.6 9.6 85 48-132 10-103 (113)
166 2rs2_A Musashi-1, RNA-binding 99.7 3.6E-18 1.2E-22 132.6 9.6 85 155-240 22-107 (109)
167 2kt5_A RNA and export factor-b 99.7 7.9E-18 2.7E-22 133.8 11.8 83 156-238 33-115 (124)
168 2cqp_A RNA-binding protein 12; 99.7 1.7E-18 5.9E-23 131.7 7.6 83 49-131 11-94 (98)
169 2cq1_A PTB-like protein L; RRM 99.7 6.7E-18 2.3E-22 128.8 10.6 80 156-240 13-94 (101)
170 2db1_A Heterogeneous nuclear r 99.7 3.5E-18 1.2E-22 134.6 9.2 81 158-239 17-100 (118)
171 1x4d_A Matrin 3; structural ge 99.7 3.5E-18 1.2E-22 130.4 8.9 79 48-131 10-91 (102)
172 2dh8_A DAZ-associated protein 99.7 2.5E-18 8.7E-23 132.5 8.2 84 156-240 14-98 (105)
173 2i2y_A Fusion protein consists 99.7 5.8E-18 2E-22 139.1 10.9 122 6-131 3-147 (150)
174 2mss_A Protein (musashi1); RNA 99.7 1.2E-18 4.2E-23 125.7 6.0 73 55-128 1-74 (75)
175 1p1t_A Cleavage stimulation fa 99.7 2.8E-18 9.4E-23 132.0 8.3 81 52-132 7-88 (104)
176 2dgw_A Probable RNA-binding pr 99.7 7E-18 2.4E-22 126.5 10.4 81 49-131 6-86 (91)
177 2ek1_A RNA-binding protein 12; 99.7 1.7E-18 5.8E-23 130.9 7.0 80 51-130 13-93 (95)
178 3ex7_B RNA-binding protein 8A; 99.7 2.8E-18 9.7E-23 136.7 8.7 83 158-240 22-105 (126)
179 2a3j_A U1 small nuclear ribonu 99.7 3.8E-18 1.3E-22 135.7 9.3 84 157-242 28-115 (127)
180 2cqd_A RNA-binding region cont 99.7 4.7E-18 1.6E-22 133.4 9.7 81 156-237 15-96 (116)
181 2hgl_A HNRPF protein, heteroge 99.7 3E-18 1E-22 137.9 8.7 81 158-239 44-127 (136)
182 2ek1_A RNA-binding protein 12; 99.7 3E-18 1E-22 129.5 8.2 79 158-236 15-94 (95)
183 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-17 3.9E-22 138.3 12.4 84 157-240 38-122 (156)
184 1x5o_A RNA binding motif, sing 99.7 7.9E-18 2.7E-22 131.7 10.7 81 157-237 24-112 (114)
185 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.4E-18 4.7E-23 132.8 6.0 81 156-238 17-99 (100)
186 2kt5_A RNA and export factor-b 99.7 8.7E-18 3E-22 133.5 10.9 84 48-131 30-113 (124)
187 2m2b_A RNA-binding protein 10; 99.7 1.7E-18 5.7E-23 139.1 6.8 84 47-131 17-107 (131)
188 1wi8_A EIF-4B, eukaryotic tran 99.7 5.1E-18 1.8E-22 130.5 9.2 82 49-132 11-94 (104)
189 2cqd_A RNA-binding region cont 99.7 5.1E-18 1.7E-22 133.2 9.3 83 48-131 12-95 (116)
190 2nlw_A Eukaryotic translation 99.7 3.4E-18 1.2E-22 131.8 8.0 81 157-238 14-101 (105)
191 2ad9_A Polypyrimidine tract-bi 99.7 3.9E-18 1.3E-22 133.5 8.4 79 157-240 30-110 (119)
192 2cpi_A CCR4-NOT transcription 99.7 5E-18 1.7E-22 132.2 8.8 81 158-238 15-102 (111)
193 2ki2_A SS-DNA binding protein 99.7 1.1E-18 3.6E-23 130.6 4.8 80 159-239 2-82 (90)
194 2dgx_A KIAA0430 protein; RRM d 99.7 7.3E-18 2.5E-22 127.7 9.5 80 50-131 6-89 (96)
195 1x4b_A Heterogeneous nuclear r 99.7 6.2E-18 2.1E-22 132.7 9.4 82 158-240 27-109 (116)
196 2cqg_A TDP-43, TAR DNA-binding 99.7 2.1E-17 7.1E-22 126.8 12.1 83 47-131 9-92 (103)
197 2err_A Ataxin-2-binding protei 99.7 3.9E-18 1.4E-22 132.4 8.1 86 45-131 21-106 (109)
198 2dnn_A RNA-binding protein 12; 99.7 8.7E-18 3E-22 130.1 9.9 78 159-238 17-94 (109)
199 2rs2_A Musashi-1, RNA-binding 99.7 4.3E-18 1.5E-22 132.1 8.2 85 46-131 18-103 (109)
200 2jwn_A Embryonic polyadenylate 99.7 1E-17 3.4E-22 133.1 10.5 81 157-238 35-116 (124)
201 2hgl_A HNRPF protein, heteroge 99.7 4.6E-18 1.6E-22 136.8 8.5 83 48-131 39-124 (136)
202 1wez_A HnRNP H', FTP-3, hetero 99.7 5.7E-18 1.9E-22 129.8 8.6 79 158-238 15-93 (102)
203 1x4a_A Splicing factor, argini 99.7 1.6E-17 5.5E-22 128.8 11.1 81 157-239 21-101 (109)
204 2m2b_A RNA-binding protein 10; 99.7 1.1E-18 3.6E-23 140.2 4.5 83 156-239 21-110 (131)
205 1wex_A Hypothetical protein (r 99.7 4.8E-18 1.6E-22 130.4 7.9 79 157-240 14-94 (104)
206 2krb_A Eukaryotic translation 99.7 2.6E-18 9E-23 125.9 6.1 73 53-126 1-80 (81)
207 3ex7_B RNA-binding protein 8A; 99.7 6E-18 2E-22 134.8 8.6 84 48-131 17-101 (126)
208 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.1E-18 1.1E-22 124.1 6.4 75 159-234 1-76 (77)
209 2cqg_A TDP-43, TAR DNA-binding 99.7 2.8E-17 9.7E-22 126.1 12.1 81 157-239 14-95 (103)
210 2fc9_A NCL protein; structure 99.7 1E-17 3.5E-22 128.1 9.5 80 157-239 14-93 (101)
211 1x4a_A Splicing factor, argini 99.7 1.6E-17 5.4E-22 128.9 10.7 84 48-133 17-100 (109)
212 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.8E-17 6E-22 137.2 11.5 84 48-131 34-118 (156)
213 2db1_A Heterogeneous nuclear r 99.7 6.2E-18 2.1E-22 133.1 8.3 81 50-131 14-97 (118)
214 1nu4_A U1A RNA binding domain; 99.7 4.6E-18 1.6E-22 129.0 7.2 85 156-242 6-94 (97)
215 1fje_B Nucleolin RBD12, protei 99.7 9.3E-18 3.2E-22 141.2 9.7 118 9-130 47-172 (175)
216 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.2E-18 7.4E-23 124.9 5.0 74 54-128 1-75 (77)
217 1wez_A HnRNP H', FTP-3, hetero 99.7 4.4E-18 1.5E-22 130.4 7.0 81 49-131 11-91 (102)
218 1x5o_A RNA binding motif, sing 99.7 1.6E-17 5.4E-22 129.9 10.3 75 48-122 20-94 (114)
219 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.3E-17 4.5E-22 135.2 10.1 82 47-128 57-139 (140)
220 1x4e_A RNA binding motif, sing 99.7 2E-18 6.9E-23 127.7 4.8 78 158-235 5-83 (85)
221 2nlw_A Eukaryotic translation 99.7 6.9E-18 2.4E-22 130.1 7.9 82 49-131 11-99 (105)
222 1wg5_A Heterogeneous nuclear r 99.7 8.8E-18 3E-22 129.2 8.5 80 158-238 15-95 (104)
223 1wg5_A Heterogeneous nuclear r 99.7 7E-18 2.4E-22 129.8 7.9 82 49-131 11-93 (104)
224 2cq4_A RNA binding motif prote 99.7 5.3E-18 1.8E-22 132.7 7.2 79 52-131 24-103 (114)
225 2cpy_A RNA-binding protein 12; 99.7 4.3E-18 1.5E-22 133.3 6.7 82 49-131 11-93 (114)
226 1wex_A Hypothetical protein (r 99.7 2.4E-17 8.3E-22 126.5 10.7 80 49-133 11-92 (104)
227 2ad9_A Polypyrimidine tract-bi 99.7 1.7E-17 5.8E-22 129.9 9.8 80 49-133 27-108 (119)
228 2cpi_A CCR4-NOT transcription 99.7 1.1E-17 3.8E-22 130.3 8.8 84 49-132 11-101 (111)
229 2lmi_A GRSF-1, G-rich sequence 99.7 2E-18 6.9E-23 133.5 4.5 83 157-240 10-95 (107)
230 1why_A Hypothetical protein ri 99.7 1.8E-17 6.2E-22 125.7 9.7 78 157-239 16-95 (97)
231 2jwn_A Embryonic polyadenylate 99.7 1.2E-17 4.1E-22 132.6 9.1 80 52-132 35-115 (124)
232 2lea_A Serine/arginine-rich sp 99.7 3.7E-18 1.3E-22 137.7 6.0 87 47-133 41-128 (135)
233 2dis_A Unnamed protein product 99.7 8.8E-18 3E-22 130.3 8.0 82 158-239 8-94 (109)
234 2a3j_A U1 small nuclear ribonu 99.7 1.3E-17 4.6E-22 132.5 9.2 83 47-131 23-109 (127)
235 2dis_A Unnamed protein product 99.7 1.3E-17 4.6E-22 129.3 8.9 83 50-132 5-92 (109)
236 2jvr_A Nucleolar protein 3; RN 99.7 1.2E-17 3.9E-22 129.7 8.3 77 159-238 29-106 (111)
237 2ki2_A SS-DNA binding protein 99.7 1.8E-18 6.1E-23 129.4 3.6 77 54-131 2-79 (90)
238 2dnn_A RNA-binding protein 12; 99.7 7.7E-18 2.6E-22 130.4 7.2 77 53-131 16-92 (109)
239 2krb_A Eukaryotic translation 99.7 5.2E-18 1.8E-22 124.3 5.8 72 159-231 2-80 (81)
240 2dnq_A RNA-binding protein 4B; 99.7 2.1E-17 7.3E-22 123.5 9.3 76 158-240 8-83 (90)
241 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.1E-18 1.4E-22 130.1 5.3 82 48-131 14-97 (100)
242 1x4f_A Matrin 3; structural ge 99.7 5.3E-18 1.8E-22 131.3 6.0 79 156-239 23-104 (112)
243 1x4c_A Splicing factor, argini 99.7 2.8E-17 9.5E-22 127.3 10.1 76 158-239 15-95 (108)
244 2cq1_A PTB-like protein L; RRM 99.7 2.6E-17 8.8E-22 125.6 9.7 81 48-133 10-92 (101)
245 1fjc_A Nucleolin RBD2, protein 99.7 1.3E-17 4.3E-22 126.3 7.8 80 157-240 15-94 (96)
246 2dha_A FLJ20171 protein; RRM d 99.7 1.2E-17 4.1E-22 132.0 8.0 85 157-242 22-110 (123)
247 2fc9_A NCL protein; structure 99.7 2.2E-17 7.4E-22 126.3 9.0 82 48-132 10-91 (101)
248 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.6E-17 8.8E-22 133.4 9.9 79 156-234 61-140 (140)
249 2ytc_A PRE-mRNA-splicing facto 99.7 3.1E-17 1.1E-21 121.2 9.4 74 157-235 11-85 (85)
250 2la4_A Nuclear and cytoplasmic 99.7 1.6E-17 5.3E-22 127.1 7.8 75 158-237 27-101 (101)
251 2dnq_A RNA-binding protein 4B; 99.7 4.6E-17 1.6E-21 121.7 10.2 77 49-132 4-80 (90)
252 2fc8_A NCL protein; structure 99.7 4.6E-17 1.6E-21 124.7 10.5 82 156-240 13-95 (102)
253 2hvz_A Splicing factor, argini 99.7 1.1E-17 3.6E-22 128.0 6.8 76 159-238 1-76 (101)
254 2jvo_A Nucleolar protein 3; nu 99.7 3.4E-17 1.2E-21 126.8 9.5 78 156-240 29-106 (108)
255 1fj7_A Nucleolin RBD1, protein 99.7 1.8E-18 6.2E-23 132.3 2.2 82 157-240 16-98 (101)
256 1x4b_A Heterogeneous nuclear r 99.7 2.3E-17 7.8E-22 129.5 8.6 79 52-131 26-105 (116)
257 2xnq_A Nuclear polyadenylated 99.7 6.7E-17 2.3E-21 122.6 10.9 75 157-238 21-96 (97)
258 1x4g_A Nucleolysin TIAR; struc 99.7 3E-17 1E-21 127.3 9.1 78 157-239 24-101 (109)
259 3q2s_C Cleavage and polyadenyl 99.7 1.4E-17 4.8E-22 146.3 8.1 80 52-131 67-149 (229)
260 2hgn_A Heterogeneous nuclear r 99.7 3.6E-18 1.2E-22 137.9 4.0 125 95-240 2-126 (139)
261 1wel_A RNA-binding protein 12; 99.7 1.5E-17 5.3E-22 132.1 7.5 83 157-240 24-107 (124)
262 2cpj_A Non-POU domain-containi 99.7 2.6E-17 8.8E-22 125.4 8.3 76 158-238 15-90 (99)
263 1rk8_A CG8781-PA, CG8781-PA pr 99.7 5.2E-17 1.8E-21 135.6 10.8 83 49-131 68-151 (165)
264 2dha_A FLJ20171 protein; RRM d 99.7 1.6E-17 5.6E-22 131.2 7.3 79 51-130 21-103 (123)
265 2lmi_A GRSF-1, G-rich sequence 99.7 7.5E-18 2.6E-22 130.3 5.2 82 49-131 7-91 (107)
266 3sde_A Paraspeckle component 1 99.7 8.3E-17 2.8E-21 144.5 12.6 118 14-131 56-178 (261)
267 2e5j_A Methenyltetrahydrofolat 99.7 2.3E-17 8E-22 125.1 7.6 79 156-238 17-95 (97)
268 2ytc_A PRE-mRNA-splicing facto 99.7 4E-17 1.4E-21 120.6 8.7 77 48-129 7-84 (85)
269 1iqt_A AUF1, heterogeneous nuc 99.7 8.6E-18 3E-22 121.1 4.8 74 160-234 1-75 (75)
270 2jvr_A Nucleolar protein 3; RN 99.7 2.3E-17 8E-22 127.9 7.5 80 49-131 24-104 (111)
271 1why_A Hypothetical protein ri 99.7 5.6E-17 1.9E-21 123.0 9.5 79 48-131 12-92 (97)
272 2xs2_A Deleted in azoospermia- 99.7 2.4E-17 8.3E-22 126.2 7.5 80 159-240 10-89 (102)
273 1whx_A Hypothetical protein ri 99.7 3.4E-17 1.2E-21 127.4 8.4 75 159-238 11-85 (111)
274 1x4f_A Matrin 3; structural ge 99.7 2.3E-17 7.7E-22 127.7 7.3 78 49-131 21-101 (112)
275 1iqt_A AUF1, heterogeneous nuc 99.7 6.5E-18 2.2E-22 121.8 3.8 73 55-128 1-74 (75)
276 2dgt_A RNA-binding protein 30; 99.7 8.9E-17 3E-21 120.7 10.2 76 157-239 9-84 (92)
277 2dgu_A Heterogeneous nuclear r 99.7 5.3E-17 1.8E-21 124.6 9.1 76 158-240 11-86 (103)
278 1wel_A RNA-binding protein 12; 99.7 7.7E-18 2.6E-22 133.8 4.6 82 49-131 21-103 (124)
279 3lqv_A PRE-mRNA branch site pr 99.7 6.1E-17 2.1E-21 126.8 9.6 79 158-238 8-86 (115)
280 2la4_A Nuclear and cytoplasmic 99.7 5.5E-17 1.9E-21 124.0 9.1 75 51-130 25-99 (101)
281 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-16 3.7E-21 126.8 11.0 76 159-238 29-107 (130)
282 2cpx_A Hypothetical protein FL 99.7 4.7E-17 1.6E-21 127.4 8.6 81 157-240 24-108 (115)
283 2dgt_A RNA-binding protein 30; 99.7 9.6E-17 3.3E-21 120.5 9.9 78 48-132 5-82 (92)
284 1fj7_A Nucleolin RBD1, protein 99.7 6.8E-18 2.3E-22 129.1 3.5 81 49-131 13-94 (101)
285 1x4g_A Nucleolysin TIAR; struc 99.7 9.9E-17 3.4E-21 124.4 10.0 80 49-133 21-100 (109)
286 2fc8_A NCL protein; structure 99.7 9.1E-17 3.1E-21 123.0 9.7 82 48-132 10-92 (102)
287 2dnp_A RNA-binding protein 14; 99.7 9.5E-17 3.2E-21 120.0 9.6 77 49-132 5-81 (90)
288 2dnp_A RNA-binding protein 14; 99.7 8.8E-17 3E-21 120.2 9.4 76 157-239 8-83 (90)
289 2kvi_A Nuclear polyadenylated 99.7 4.5E-17 1.5E-21 123.3 7.8 78 156-240 8-86 (96)
290 1nu4_A U1A RNA binding domain; 99.7 2.1E-17 7.3E-22 125.3 5.9 81 50-132 5-89 (97)
291 2cq2_A Hypothetical protein LO 99.7 4E-17 1.4E-21 126.5 7.5 77 157-238 24-107 (114)
292 2cpj_A Non-POU domain-containi 99.7 5.9E-17 2E-21 123.4 8.4 79 48-131 10-88 (99)
293 2cpx_A Hypothetical protein FL 99.7 1.7E-17 5.8E-22 130.0 5.4 85 48-132 20-105 (115)
294 2dgu_A Heterogeneous nuclear r 99.7 1.1E-16 3.9E-21 122.7 9.9 77 48-131 6-82 (103)
295 1wf1_A RNA-binding protein RAL 99.7 8.2E-17 2.8E-21 125.0 9.0 74 158-238 27-101 (110)
296 2j8a_A Histone-lysine N-methyl 99.7 9.7E-17 3.3E-21 125.0 9.1 81 159-239 3-98 (136)
297 2lcw_A RNA-binding protein FUS 99.5 2.4E-18 8.1E-23 135.2 0.0 83 158-240 7-98 (116)
298 2cpd_A Apobec-1 stimulating pr 99.7 2E-16 6.8E-21 120.4 10.8 75 158-239 15-91 (99)
299 1x4c_A Splicing factor, argini 99.7 1.1E-16 3.8E-21 123.9 9.5 76 50-131 12-92 (108)
300 2j8a_A Histone-lysine N-methyl 99.7 5.2E-17 1.8E-21 126.5 7.5 78 54-131 3-95 (136)
301 1sjr_A Polypyrimidine tract-bi 99.7 1.3E-16 4.4E-21 131.2 10.1 77 159-238 47-125 (164)
302 2cqh_A IGF-II mRNA-binding pro 99.7 4.7E-17 1.6E-21 122.4 6.9 77 158-240 8-86 (93)
303 2f3j_A RNA and export factor b 99.7 9.3E-17 3.2E-21 135.5 9.3 83 157-239 87-169 (177)
304 2xs2_A Deleted in azoospermia- 99.7 2.3E-17 7.7E-22 126.4 5.1 78 51-130 7-84 (102)
305 2jvo_A Nucleolar protein 3; nu 99.7 1.2E-16 4.3E-21 123.6 9.3 78 47-131 25-102 (108)
306 2hgn_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 134.6 3.8 81 49-131 42-122 (139)
307 2hgm_A HNRPF protein, heteroge 99.7 3.1E-17 1.1E-21 130.0 5.8 79 158-238 42-122 (126)
308 2e5j_A Methenyltetrahydrofolat 99.7 1E-16 3.4E-21 121.6 8.4 79 49-131 15-93 (97)
309 2xnq_A Nuclear polyadenylated 99.7 2E-16 6.8E-21 120.0 10.0 77 48-131 17-94 (97)
310 1wg1_A KIAA1579 protein, homol 99.7 1.3E-16 4.6E-21 118.7 8.8 74 159-238 6-79 (88)
311 2hgm_A HNRPF protein, heteroge 99.7 3.7E-17 1.3E-21 129.6 6.0 81 48-130 37-119 (126)
312 2f3j_A RNA and export factor b 99.7 9.2E-17 3.2E-21 135.5 8.7 83 49-131 84-166 (177)
313 2lcw_A RNA-binding protein FUS 99.5 3.8E-18 1.3E-22 134.0 0.0 82 50-131 4-94 (116)
314 2diu_A KIAA0430 protein; struc 99.7 1.2E-16 4.2E-21 117.7 8.0 71 160-239 11-86 (96)
315 3egn_A RNA-binding protein 40; 99.7 7E-17 2.4E-21 131.5 7.0 85 157-241 44-134 (143)
316 3d2w_A TAR DNA-binding protein 99.7 2.5E-16 8.6E-21 117.4 9.4 75 158-240 11-87 (89)
317 1whx_A Hypothetical protein ri 99.7 9.6E-17 3.3E-21 124.9 7.3 75 52-131 9-83 (111)
318 1fjc_A Nucleolin RBD2, protein 99.7 8.4E-17 2.9E-21 121.7 6.7 79 49-131 12-90 (96)
319 2cpd_A Apobec-1 stimulating pr 99.7 5.3E-16 1.8E-20 118.0 11.1 78 48-132 10-89 (99)
320 2cq2_A Hypothetical protein LO 99.7 1E-16 3.6E-21 124.1 7.1 78 49-131 21-105 (114)
321 2cqh_A IGF-II mRNA-binding pro 99.7 1.3E-16 4.4E-21 120.0 7.3 77 49-131 4-82 (93)
322 1wf1_A RNA-binding protein RAL 99.7 2.5E-16 8.7E-21 122.3 9.2 75 50-131 24-99 (110)
323 2pe8_A Splicing factor 45; RRM 99.7 5.9E-16 2E-20 118.9 11.0 82 157-238 7-95 (105)
324 1x5p_A Negative elongation fac 99.7 4.7E-16 1.6E-20 117.9 9.9 76 157-239 14-89 (97)
325 2e5i_A Heterogeneous nuclear r 99.7 5.2E-16 1.8E-20 122.4 10.4 75 159-238 26-103 (124)
326 2kvi_A Nuclear polyadenylated 99.7 1.7E-16 5.9E-21 120.1 7.4 76 49-131 6-82 (96)
327 3pgw_A U1-A; protein-RNA compl 99.7 2E-15 6.8E-20 136.8 15.8 82 156-239 7-92 (282)
328 1wg1_A KIAA1579 protein, homol 99.7 2.1E-16 7.1E-21 117.6 7.6 76 51-132 3-78 (88)
329 2e5g_A U6 snRNA-specific termi 99.6 6.2E-16 2.1E-20 116.5 9.9 77 49-131 4-81 (94)
330 2diu_A KIAA0430 protein; struc 99.6 5.6E-16 1.9E-20 114.2 9.3 75 51-134 6-86 (96)
331 2e44_A Insulin-like growth fac 99.6 2.9E-16 1E-20 118.7 7.9 78 158-238 15-93 (96)
332 3egn_A RNA-binding protein 40; 99.6 1.9E-16 6.6E-21 128.9 7.1 84 48-131 40-129 (143)
333 2e5g_A U6 snRNA-specific termi 99.6 4.5E-16 1.5E-20 117.3 8.3 75 159-238 9-83 (94)
334 1sjr_A Polypyrimidine tract-bi 99.6 7.6E-16 2.6E-20 126.6 10.0 80 50-132 43-124 (164)
335 2dnl_A Cytoplasmic polyadenyla 99.6 3.1E-16 1.1E-20 122.6 7.4 77 49-128 4-84 (114)
336 1x5p_A Negative elongation fac 99.6 1.3E-15 4.6E-20 115.4 10.5 77 49-132 11-87 (97)
337 3tyt_A Heterogeneous nuclear r 99.6 6.2E-16 2.1E-20 133.6 9.7 77 158-238 4-81 (205)
338 3beg_B Splicing factor, argini 99.6 2E-16 6.7E-21 123.9 5.8 71 52-128 15-85 (115)
339 3beg_B Splicing factor, argini 99.6 3.8E-16 1.3E-20 122.3 7.4 73 158-236 16-93 (115)
340 3pgw_S U1-70K; protein-RNA com 99.6 8.9E-16 3E-20 147.2 11.2 83 49-131 98-181 (437)
341 2e44_A Insulin-like growth fac 99.6 6.3E-16 2.2E-20 116.9 8.1 79 50-131 12-91 (96)
342 3zzy_A Polypyrimidine tract-bi 99.6 1.7E-15 5.7E-20 120.0 10.6 79 51-133 26-107 (130)
343 2pe8_A Splicing factor 45; RRM 99.6 2.1E-15 7.1E-20 115.8 10.1 82 50-131 5-93 (105)
344 2voo_A Lupus LA protein; RNA-b 99.6 2.8E-15 9.5E-20 128.2 11.6 81 157-238 108-188 (193)
345 2hzc_A Splicing factor U2AF 65 99.6 8.1E-16 2.8E-20 114.0 7.1 71 51-127 4-85 (87)
346 2adc_A Polypyrimidine tract-bi 99.6 4.1E-15 1.4E-19 130.8 12.5 111 16-130 72-226 (229)
347 3d2w_A TAR DNA-binding protein 99.6 1.5E-15 5E-20 113.2 8.0 74 50-131 8-83 (89)
348 2bz2_A Negative elongation fac 99.6 1.6E-15 5.4E-20 119.8 8.2 77 157-240 38-114 (121)
349 2hzc_A Splicing factor U2AF 65 99.6 2.4E-15 8.3E-20 111.4 8.8 70 158-233 6-86 (87)
350 1qm9_A Polypyrimidine tract-bi 99.6 3.1E-15 1.1E-19 128.3 10.3 111 16-130 41-195 (198)
351 1wf0_A TDP-43, TAR DNA-binding 99.6 7.3E-16 2.5E-20 114.6 5.1 77 158-240 5-81 (88)
352 2dnl_A Cytoplasmic polyadenyla 99.6 1.3E-15 4.3E-20 119.1 6.6 78 158-238 8-89 (114)
353 2e5i_A Heterogeneous nuclear r 99.6 6.2E-15 2.1E-19 116.2 10.6 74 54-132 26-102 (124)
354 2voo_A Lupus LA protein; RNA-b 99.6 3.3E-15 1.1E-19 127.7 9.4 78 53-131 109-186 (193)
355 1jmt_A Splicing factor U2AF 35 99.6 1.4E-15 4.9E-20 116.6 5.7 72 163-234 20-103 (104)
356 3u1l_A PRE-mRNA-splicing facto 99.6 3.5E-15 1.2E-19 130.7 8.5 79 157-240 133-232 (240)
357 1wf0_A TDP-43, TAR DNA-binding 99.6 1.6E-15 5.4E-20 112.8 5.2 75 51-131 3-77 (88)
358 3v4m_A Splicing factor U2AF 65 99.6 6.3E-15 2.1E-19 113.2 8.2 82 158-239 5-99 (105)
359 2bz2_A Negative elongation fac 99.6 6.2E-15 2.1E-19 116.3 8.3 76 49-131 35-110 (121)
360 2dit_A HIV TAT specific factor 99.5 2E-14 6.8E-19 111.9 9.6 80 157-239 14-104 (112)
361 3ue2_A Poly(U)-binding-splicin 99.5 3.2E-14 1.1E-18 111.4 10.0 82 157-238 19-110 (118)
362 1jmt_A Splicing factor U2AF 35 99.5 3.7E-15 1.3E-19 114.3 4.2 72 58-129 20-103 (104)
363 3u1l_A PRE-mRNA-splicing facto 99.5 1.8E-14 6.1E-19 126.2 7.9 78 50-132 131-229 (240)
364 3v4m_A Splicing factor U2AF 65 99.5 2.6E-14 9E-19 109.7 7.4 81 51-131 3-96 (105)
365 2dit_A HIV TAT specific factor 99.5 1.1E-13 3.9E-18 107.5 9.3 80 49-131 11-101 (112)
366 3ue2_A Poly(U)-binding-splicin 99.5 1.3E-13 4.6E-18 107.8 8.8 80 52-131 19-108 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.2E-13 1.1E-17 102.4 8.9 66 168-239 27-92 (100)
368 3s6e_A RNA-binding protein 39; 99.4 5.3E-13 1.8E-17 103.7 9.1 80 158-240 7-96 (114)
369 3tht_A Alkylated DNA repair pr 99.4 4.9E-13 1.7E-17 123.3 8.9 76 156-236 16-98 (345)
370 3tht_A Alkylated DNA repair pr 99.4 5.6E-13 1.9E-17 122.9 7.4 77 49-130 14-97 (345)
371 2d9o_A DNAJ (HSP40) homolog, s 99.4 4.2E-12 1.4E-16 96.2 9.9 73 53-131 10-89 (100)
372 3s6e_A RNA-binding protein 39; 99.3 3.2E-12 1.1E-16 99.3 7.8 79 50-131 4-92 (114)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 5.6E-11 1.9E-15 86.7 7.6 71 159-237 8-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 1.1E-10 3.7E-15 90.9 9.3 81 158-243 18-102 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.1 4.9E-10 1.7E-14 81.7 7.7 75 51-133 5-87 (91)
376 3dxb_A Thioredoxin N-terminall 99.0 3.9E-10 1.3E-14 98.3 8.2 69 170-238 141-214 (222)
377 2dyd_A Poly(A)-binding protein 99.0 3.4E-11 1.2E-15 86.0 0.6 35 318-352 8-42 (85)
378 1owx_A Lupus LA protein, SS-B, 99.0 7E-10 2.4E-14 86.3 7.9 78 49-131 14-95 (121)
379 1ufw_A Synaptojanin 2; RNP dom 99.0 5.8E-10 2E-14 81.7 5.5 69 159-235 16-93 (95)
380 1ufw_A Synaptojanin 2; RNP dom 98.9 2.6E-09 9E-14 78.2 7.2 74 48-129 10-92 (95)
381 3dxb_A Thioredoxin N-terminall 98.9 3E-09 1E-13 92.6 8.0 68 64-131 140-212 (222)
382 1nmr_A Poly(A)-binding protein 98.9 1.5E-10 5.3E-15 82.6 -1.0 35 318-352 9-43 (85)
383 1ifw_A Polyadenylate-binding p 98.9 2.2E-10 7.5E-15 83.1 -0.4 37 316-352 4-42 (92)
384 3kuj_A Polyadenylate-binding p 98.8 4.3E-10 1.5E-14 81.1 0.7 36 317-352 5-40 (88)
385 1g9l_A Polyadenylate-binding p 98.8 3.8E-09 1.3E-13 83.1 5.8 35 319-353 53-87 (144)
386 2l9w_A U4/U6 snRNA-associated- 98.7 1.3E-07 4.4E-12 70.6 8.9 72 158-234 21-97 (117)
387 2l9w_A U4/U6 snRNA-associated- 98.4 1E-06 3.6E-11 65.7 8.5 73 50-127 18-95 (117)
388 1wey_A Calcipressin 1; structu 98.1 1.3E-05 4.3E-10 59.7 7.5 75 158-237 5-84 (104)
389 1i2t_A HYD protein; four alpha 98.0 5.2E-07 1.8E-11 60.4 -1.4 21 332-352 1-21 (61)
390 2dhx_A Poly (ADP-ribose) polym 97.9 5.3E-05 1.8E-09 56.1 8.5 69 50-126 5-78 (104)
391 1uw4_A UPF3X; nonsense mediate 97.6 0.00021 7.1E-09 52.2 7.7 68 54-121 2-72 (91)
392 1whv_A Poly(A)-specific ribonu 97.6 0.00031 1.1E-08 51.4 8.4 56 52-115 15-70 (100)
393 2dhx_A Poly (ADP-ribose) polym 97.6 0.0004 1.4E-08 51.4 8.5 72 159-238 9-85 (104)
394 1uw4_A UPF3X; nonsense mediate 97.6 0.00086 2.9E-08 48.9 10.1 77 159-235 2-86 (91)
395 1wey_A Calcipressin 1; structu 97.5 0.00022 7.4E-09 53.1 6.0 74 52-130 4-82 (104)
396 1wwh_A Nucleoporin 35, nucleop 97.2 0.0011 3.8E-08 50.7 7.4 73 50-129 21-94 (119)
397 1whv_A Poly(A)-specific ribonu 97.1 0.0012 4E-08 48.3 6.5 53 159-219 17-69 (100)
398 3ctr_A Poly(A)-specific ribonu 97.0 0.0015 5.1E-08 47.9 5.8 54 54-115 7-60 (101)
399 1wwh_A Nucleoporin 35, nucleop 96.9 0.0076 2.6E-07 46.0 9.6 74 159-239 25-99 (119)
400 3ctr_A Poly(A)-specific ribonu 96.7 0.0023 7.8E-08 46.9 4.9 54 159-220 7-60 (101)
401 2l08_A Regulator of nonsense t 96.5 0.0072 2.5E-07 44.3 6.6 77 159-235 10-94 (97)
402 2l08_A Regulator of nonsense t 96.4 0.0016 5.6E-08 47.8 2.6 69 53-121 9-80 (97)
403 3pq1_A Poly(A) RNA polymerase; 96.1 0.0029 1E-07 60.1 3.5 57 51-112 51-107 (464)
404 3p3d_A Nucleoporin 53; structu 96.0 0.0073 2.5E-07 46.8 4.5 77 53-131 7-98 (132)
405 3p3d_A Nucleoporin 53; structu 95.7 0.03 1E-06 43.3 6.8 75 159-235 8-97 (132)
406 3pq1_A Poly(A) RNA polymerase; 95.2 0.01 3.6E-07 56.4 3.4 63 158-226 53-115 (464)
407 3d45_A Poly(A)-specific ribonu 88.2 1.2 4E-05 43.0 7.7 55 53-115 440-494 (507)
408 3d45_A Poly(A)-specific ribonu 82.0 2.8 9.7E-05 40.3 7.1 54 159-220 441-494 (507)
409 2g0c_A ATP-dependent RNA helic 58.8 8.2 0.00028 26.2 3.2 59 169-235 12-75 (76)
410 3j21_T 50S ribosomal protein L 53.5 45 0.0015 23.5 6.3 57 160-218 24-82 (86)
411 4eyt_A Telomerase associated p 49.5 66 0.0023 22.7 8.1 59 52-117 11-69 (129)
412 4e8u_A Putative uncharacterize 47.6 38 0.0013 27.2 5.8 45 65-111 33-80 (172)
413 1xn9_A 30S ribosomal protein S 43.4 36 0.0012 24.8 4.6 48 63-111 28-81 (101)
414 2v94_A RPS24, 30S ribosomal pr 42.5 43 0.0015 24.6 5.0 47 63-110 37-89 (107)
415 1ywx_A 30S ribosomal protein S 42.0 42 0.0014 24.4 4.8 47 63-110 28-80 (102)
416 3j21_T 50S ribosomal protein L 39.5 91 0.0031 21.9 6.1 56 56-113 25-82 (86)
417 4e8u_A Putative uncharacterize 37.5 70 0.0024 25.7 5.9 50 159-210 13-73 (172)
418 4eyt_A Telomerase associated p 35.4 1.2E+02 0.0039 21.4 7.8 73 159-238 13-92 (129)
419 1vq8_S 50S ribosomal protein L 32.8 86 0.0029 21.9 5.1 55 160-216 23-79 (85)
420 3u5c_Y RP50, 40S ribosomal pro 32.3 1.4E+02 0.0049 22.8 6.6 47 63-110 33-85 (135)
421 4a17_R RPL23A, 60S ribosomal p 32.0 98 0.0034 24.2 5.7 57 160-218 88-146 (150)
422 2g1d_A 30S ribosomal protein S 31.4 37 0.0013 24.5 3.1 47 63-110 29-81 (98)
423 3u5e_X 60S ribosomal protein L 30.3 1.1E+02 0.0038 23.6 5.7 57 160-218 80-138 (142)
424 3lpe_A Putative transcription 27.7 1.1E+02 0.0039 21.4 5.2 34 185-222 40-73 (92)
425 3ts2_A Protein LIN-28 homolog 26.8 6.6 0.00022 31.0 -1.8 29 68-103 2-30 (148)
426 4bby_A Alkyldihydroxyacetoneph 25.3 72 0.0025 31.5 5.0 53 167-219 352-408 (658)
427 2xzm_P RPS24E; ribosome, trans 25.0 1E+02 0.0035 24.1 4.7 47 63-110 31-83 (149)
428 3iz5_X 60S ribosomal protein L 23.7 1.1E+02 0.0037 24.0 4.6 56 160-217 90-147 (152)
429 3mfb_A Uncharacterized protein 22.8 1.3E+02 0.0046 23.6 5.1 36 170-205 3-42 (157)
430 1wvf_A 4-cresol dehydrogenase 22.5 60 0.0021 31.0 3.7 42 174-215 217-260 (520)
431 3fry_A Probable copper-exporti 22.5 1.6E+02 0.0054 18.8 6.8 55 159-219 7-61 (73)
432 2zkr_s 60S ribosomal protein L 21.2 2E+02 0.0068 22.6 5.7 57 160-218 94-152 (156)
433 1igq_A Transcriptional repress 21.2 58 0.002 21.3 2.2 23 81-103 20-42 (62)
434 3mfb_A Uncharacterized protein 21.1 1.5E+02 0.0051 23.4 5.0 35 65-99 3-41 (157)
435 3u5e_X 60S ribosomal protein L 21.0 2E+02 0.007 22.1 5.7 55 56-112 81-137 (142)
436 4a17_R RPL23A, 60S ribosomal p 20.7 2.1E+02 0.0071 22.3 5.7 55 56-112 89-145 (150)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.7e-38 Score=276.73 Aligned_cols=176 Identities=25% Similarity=0.399 Sum_probs=155.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
...+.++|||+|||+++|+++|+++|++||.|.+|+|++|. +|+++|||||+|.+.++|++|++.+|+..+.|+.+.+.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999876
Q ss_pred cccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeC
Q 036905 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207 (354)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~ 207 (354)
+...... .......+|||+||+..+|+++|+++|+.||.|.+|+|+.+.. .++|||||+|.
T Consensus 91 ~~~~~~~------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~ 151 (213)
T 4f02_A 91 WSQRDPS------------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFE 151 (213)
T ss_dssp ECCCCTH------------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEES
T ss_pred ccccccc------------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeC
Confidence 6543211 1112236899999999999999999999999999999999864 47999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeccCchhhhHH
Q 036905 208 NPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSY 243 (354)
Q Consensus 208 ~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~~~ 243 (354)
+.++|.+|++.|||..|+|++|+|.+|++++.+...
T Consensus 152 ~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~ 187 (213)
T 4f02_A 152 TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 187 (213)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEcCCCcccchh
Confidence 999999999999999999999999999988776544
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.9e-37 Score=281.72 Aligned_cols=222 Identities=19% Similarity=0.299 Sum_probs=195.8
Q ss_pred CCccceeEEEecCchhhHHHHH-HhccccccccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-C
Q 036905 13 SAILGTPFSLYVGDLDSTDLLR-LCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-D 90 (354)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~ 90 (354)
+.+.|++|+.|.+..+++.++. ++...+....+........++|||+|||+++|+++|+++|+.||.|.+|+++.+. +
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~ 133 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERT 133 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCC
Confidence 5678999999999999998885 4556666555555556677899999999999999999999999999999999998 9
Q ss_pred CCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCcc
Q 036905 91 GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDV 170 (354)
Q Consensus 91 g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 170 (354)
|.++|||||+|.+.++|.+|++.|||..+.|+.|.+.+....... ......++|||+|||..+
T Consensus 134 g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-----------------~~~~~~~~l~v~nlp~~~ 196 (284)
T 3smz_A 134 GQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT-----------------PALLHSRCLCVDRLPPGF 196 (284)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-----------------TTTTSCSEEEEECCCTTC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-----------------cccCCccEEEEecCCccc
Confidence 999999999999999999999999999999999998876543211 111234799999999995
Q ss_pred -CHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchhhhHHHHHhhh
Q 036905 171 -DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTSYLRIMYA 249 (354)
Q Consensus 171 -t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~ 249 (354)
|+++|+++|+.||.|.+++|+.+.+|.++|||||+|.+.++|.+|+..|||..|+|++|+|.|++++..++..+.++.+
T Consensus 197 ~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~a 276 (284)
T 3smz_A 197 NDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIA 276 (284)
T ss_dssp CCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888777766
Q ss_pred hC
Q 036905 250 KQ 251 (354)
Q Consensus 250 ~~ 251 (354)
.+
T Consensus 277 aq 278 (284)
T 3smz_A 277 AQ 278 (284)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=252.54 Aligned_cols=165 Identities=25% Similarity=0.377 Sum_probs=150.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~ 133 (354)
++|||+|||+++|+++|+++|+.||.|.+|+++.+++++++|||||+|.+.++|++|++.|||..+.|+.|.+.+.....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999999989999999999999999999999999999999999987765422
Q ss_pred cccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHH
Q 036905 134 IQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEA 212 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A 212 (354)
.. ......+|||+|||..+|+++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|
T Consensus 81 ~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 142 (166)
T 3md3_A 81 QS------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142 (166)
T ss_dssp CC------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred CC------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 11 11233789999999999999999999999999999999986 899999999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEeccC
Q 036905 213 NRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 213 ~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.+|+..|||..|+|++|+|.||++
T Consensus 143 ~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 143 QNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999974
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.4e-35 Score=246.17 Aligned_cols=163 Identities=31% Similarity=0.468 Sum_probs=149.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
++++|||+|||+++|+++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+..
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35899999999999999999999999999999999999 99999999999999999999999999999999999987765
Q ss_pred ccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCH
Q 036905 131 AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNP 209 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~ 209 (354)
.... .....+|||+|||..+++++|+++|+.||.|.++++..+. +|.++|||||+|.+.
T Consensus 81 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 81 PSSA--------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CCCG--------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 3221 1223789999999999999999999999999999999987 899999999999999
Q ss_pred HHHHHHHHHhCCceeCCee--EEEEec
Q 036905 210 DEANRAINTLNGILFHQKP--LYVAIA 234 (354)
Q Consensus 210 ~~A~~Ai~~l~g~~i~g~~--l~v~~a 234 (354)
++|.+|++.|||..+.|+. |+|.||
T Consensus 141 ~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 141 IEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999964 899886
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.7e-35 Score=254.91 Aligned_cols=179 Identities=23% Similarity=0.359 Sum_probs=150.5
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
......++|||+|||+++|+++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|++|++. ++..+.|+.|.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 345567899999999999999999999999999999999998 899999999999999999999975 899999999997
Q ss_pred ccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEE
Q 036905 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVC 205 (354)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~ 205 (354)
.+......... .......++|||+|||.++|+++|+++|+.||.|.+|.++.+. +|.++|||||+
T Consensus 87 ~~~~~~~~~~~--------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~ 152 (196)
T 1l3k_A 87 KRAVSREDSQR--------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVT 152 (196)
T ss_dssp EECCC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred ecccCcccccc--------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEE
Confidence 76554221100 0112234799999999999999999999999999999999997 89999999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeeEEEEeccCchhhhH
Q 036905 206 FSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERTS 242 (354)
Q Consensus 206 f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~~ 242 (354)
|.+.++|.+|+.. +|..|+|+.|.|.++.++.....
T Consensus 153 F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 153 FDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp ESSHHHHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred ECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 9999999999986 89999999999999998877654
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.9e-35 Score=248.29 Aligned_cols=163 Identities=28% Similarity=0.471 Sum_probs=151.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
++++|||+|||+++|+++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|++|++.|+|..+.|+.|.+.+..
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999997 89999999999999999999999999999999999988765
Q ss_pred ccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCH
Q 036905 131 AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNP 209 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~ 209 (354)
.... ....++|||+|||..+++++|+++|+.||.|.++.++.+. +|.++|||||+|.+.
T Consensus 82 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 82 PGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp CCSS--------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 4221 1223789999999999999999999999999999999998 899999999999999
Q ss_pred HHHHHHHHHhCCceeCC--eeEEEEec
Q 036905 210 DEANRAINTLNGILFHQ--KPLYVAIA 234 (354)
Q Consensus 210 ~~A~~Ai~~l~g~~i~g--~~l~v~~a 234 (354)
++|.+|+..|||..+.| ++|+|.||
T Consensus 142 ~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 142 EEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999987 99999986
No 7
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.7e-35 Score=271.05 Aligned_cols=217 Identities=14% Similarity=0.252 Sum_probs=175.5
Q ss_pred eeeeccCCCCccceeEEEecCchhhHHHHHHhccccccccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcC-CeeEE
Q 036905 5 LRALNNNDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFG-DIQSS 83 (354)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v 83 (354)
++.+.+..+ +.|++|+.|....+++.++.++...+....+... ....++|||+|||+++|+++|+++|+.|| .|.+|
T Consensus 71 v~i~~~~~~-~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~-~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v 148 (292)
T 2ghp_A 71 VDVADSLKK-NFRFARIEFARYDGALAAITKTHKVVGQNEIIVS-HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSI 148 (292)
T ss_dssp EEEEECTTS-SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE-ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEE
T ss_pred EEEEECCCC-CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE-ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEE
Confidence 444444433 5799999999999999998776666553332221 23578999999999999999999999999 99999
Q ss_pred EEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccccccccccccccccccCCCchhhhhcCCceEEE
Q 036905 84 KVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYV 163 (354)
Q Consensus 84 ~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 163 (354)
+++.+..|.++|||||+|.+.++|.+|++.|||..+.|+.|.+.+.......... .......++|||
T Consensus 149 ~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~-------------~~~~~~~~~l~v 215 (292)
T 2ghp_A 149 RLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT-------------DSATLEGREIMI 215 (292)
T ss_dssp ECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC----------------------CCTTTEEEE
T ss_pred EEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-------------cccCCCCceEEE
Confidence 9999988899999999999999999999999999999999998776542211100 011233489999
Q ss_pred eCCCCc-cCHHHHHHHhhcCCCeeEEEEeeCCC--CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 164 KNINDD-VDEIELKQYFSQCGIISSVKIMRTNR--GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 164 ~nl~~~-~t~~~L~~~F~~~G~v~~v~i~~~~~--g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
+|||.. +|+++|+++|+.||.|.+|+++.+.. |.++|||||+|.+.++|.+|+ .|||..|+|++|+|.|++++
T Consensus 216 ~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 216 RNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred ECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 999999 99999999999999999999999886 999999999999999999999 99999999999999999886
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.4e-35 Score=257.86 Aligned_cols=177 Identities=22% Similarity=0.337 Sum_probs=152.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
..++|||+|||+++|+++|+++|+.||.|.+|+++++. +|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+..
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35799999999999999999999999999999999998 89999999999999999999999999999999999976654
Q ss_pred ccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCH
Q 036905 131 AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNP 209 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~ 209 (354)
........ ...........++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.
T Consensus 107 ~~~~~~~~---------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 107 NIGQAQPI---------IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp CCGGGHHH---------HHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred Cccccchh---------hhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 32211000 00011223445899999999999999999999999999999999997 899999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 210 DEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 210 ~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
++|.+|+..|||..|+|++|+|.|+..+
T Consensus 178 ~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 178 QSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 9999999999999999999999999866
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=5.4e-35 Score=246.95 Aligned_cols=165 Identities=24% Similarity=0.398 Sum_probs=144.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CC--CceeEEEEEeecHHHHHHHHHHhhhCccC---CeEEE
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DG--KSKGYGFVQYSTQESALNAIEKLYAATVE---GMELY 125 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g--~skg~aFV~F~~~e~A~~Ai~~lng~~i~---g~~i~ 125 (354)
..++|||+|||+++|+++|+++|++||.|.+|+++++. +| +++|||||+|.+.++|++|++.|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998 54 89999999999999999999999998765 34444
Q ss_pred eccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEE
Q 036905 126 APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVC 205 (354)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~ 205 (354)
+.+...... .....++|||+|||..+|+++|+++|+.||.|.++.++++.+|.++|||||+
T Consensus 82 ~~~~~~~~~-------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~ 142 (175)
T 3nmr_A 82 MKPADSEKN-------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVT 142 (175)
T ss_dssp EEECGGGCC-------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEE
T ss_pred Ecccccccc-------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEE
Confidence 433322110 1112378999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCceeC---CeeEEEEecc
Q 036905 206 FSNPDEANRAINTLNGILFH---QKPLYVAIAQ 235 (354)
Q Consensus 206 f~~~~~A~~Ai~~l~g~~i~---g~~l~v~~a~ 235 (354)
|.+.++|.+|+..|||..+. |++|+|.||.
T Consensus 143 f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 143 FTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp ESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred ECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999999998776 4999999984
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.2e-35 Score=247.73 Aligned_cols=163 Identities=23% Similarity=0.431 Sum_probs=147.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
++++|||+|||+++|+++|+++|+.||.|.+|+++++. +|+++|||||+|.+.++|++|++. +..+.|+.|.+.+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 46799999999999999999999999999999999997 899999999999999999999984 677888888765543
Q ss_pred ccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCH
Q 036905 131 AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNP 209 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~ 209 (354)
... ......+|||+|||.++|+++|+++|+.||.|.++.++.+. +|.++|||||+|.+.
T Consensus 80 ~~~--------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 80 PRD--------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp CHH--------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred chh--------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 211 11223789999999999999999999999999999999986 899999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 210 DEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 210 ~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
++|.+|++ +||..|+|++|+|.||.++
T Consensus 140 ~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 140 DAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 99999998 8999999999999999876
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.8e-33 Score=242.61 Aligned_cols=181 Identities=16% Similarity=0.295 Sum_probs=147.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhc----C-------CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccC
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKF----G-------DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~ 120 (354)
.+++|||+|||+++|+++|+++|+.| | .|.++++ ++++|||||+|.+.++|++|+ .|||..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 46899999999999999999999999 5 5666555 466899999999999999999 79999999
Q ss_pred CeEEEecccccccccccccc-ccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCe
Q 036905 121 GMELYAPSLRAGRIQESASF-NNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGIS 198 (354)
Q Consensus 121 g~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~ 198 (354)
|+.|.+.+............ ....... ..........++|||+|||..+++++|+++|+.||.|.+|.+..+. +|.+
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPG-VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTT-SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCC-CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 99999887655321111000 0000000 0011112345899999999999999999999999999999999997 8999
Q ss_pred eeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchh
Q 036905 199 KGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 199 kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~ 239 (354)
+|||||+|.+.++|.+|++.|||..|+|++|+|.|++++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999988753
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.8e-33 Score=244.09 Aligned_cols=178 Identities=15% Similarity=0.203 Sum_probs=143.0
Q ss_pred CCCeEEEcCCC-CCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLA-STIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
++++|||+||| +++|+++|+++|+.||.|.+|+++++ ++|||||+|.+.++|++||+.|||..+.|+.|.+.+.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46799999999 89999999999999999999999875 37999999999999999999999999999999988776
Q ss_pred cccccccc------------ccccccccCCCchh-h----hhcCCceEEEeCCCCccCHHHHHHHhhcCCCe--eEEEEe
Q 036905 131 AGRIQESA------------SFNNLYVKNLDDDV-T----EEILDKNLYVKNINDDVDEIELKQYFSQCGII--SSVKIM 191 (354)
Q Consensus 131 ~~~~~~~~------------~~~~~~~~~~~~~~-~----~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v--~~v~i~ 191 (354)
........ .+............ . .....++|||+|||+++|+++|+++|++||.| .+++++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 43211000 00000000000000 0 01235789999999999999999999999999 899998
Q ss_pred eCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe----eEEEEec
Q 036905 192 RTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK----PLYVAIA 234 (354)
Q Consensus 192 ~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~----~l~v~~a 234 (354)
.+. +.++|||||+|.+.++|.+|+..|||..|.|+ ++.|+|+
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 876 45679999999999999999999999999886 6777775
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=6e-34 Score=240.97 Aligned_cols=167 Identities=22% Similarity=0.303 Sum_probs=144.7
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
....+.++|||+|||.++|+++|+++|+.||.+..+.+....+|.++|||||+|.+.++|++|++ |||..+.|+.|.+.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 35567899999999999999999999999998876333333378999999999999999999995 99999999999988
Q ss_pred cccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeC
Q 036905 128 SLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFS 207 (354)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~ 207 (354)
+....... .....++|||+|||..+|+++|+++|+.||.|..+ ..+|.++|||||+|.
T Consensus 87 ~~~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~ 144 (175)
T 1fje_B 87 KPKGRDSK------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFK 144 (175)
T ss_dssp CCCCSSCS------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECS
T ss_pred cCCCcccc------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEEC
Confidence 76542211 11223799999999999999999999999988766 557889999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 208 NPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 208 ~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
+.++|.+|+..|||..|+|++|+|.|++++
T Consensus 145 ~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 145 SEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999999999999876
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=4.8e-33 Score=234.53 Aligned_cols=158 Identities=16% Similarity=0.331 Sum_probs=141.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhc----C-------CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccC
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKF----G-------DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~ 120 (354)
+.++|||+|||+++|+++|+++|+.| | .|.++++. +++|||||+|.+.++|++|+ .+||..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46799999999999999999999999 6 77777764 45899999999999999999 79999999
Q ss_pred CeEEEeccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCee
Q 036905 121 GMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISK 199 (354)
Q Consensus 121 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~k 199 (354)
|+.|.+.+....... ...++|||+|||.++|+++|+++|++||.|.++.+..+. +|.++
T Consensus 77 g~~i~v~~~~~~~~~--------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~ 136 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPL--------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 136 (172)
T ss_dssp TEECEEECCSSCCCC--------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEE
T ss_pred CceeeecCCcccCCC--------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcc
Confidence 999998765432110 114799999999999999999999999999999999997 99999
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 200 GFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 200 g~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
|||||+|.+.++|.+|++.|||..|+|++|+|.||.
T Consensus 137 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 137 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999999999999999973
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.1e-32 Score=251.20 Aligned_cols=182 Identities=21% Similarity=0.301 Sum_probs=148.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEE
Q 036905 49 MATPTFIPFTVNLASTIDNWKLH----QIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i 124 (354)
+..++++|||+|||+++|+++|+ ++|+.||.|.+|++.+ +|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 45678999999999999999966 9999999999999876 68899999999999999999999999999999999
Q ss_pred Eecccccccccc---cccccccc---------------------------------------------------------
Q 036905 125 YAPSLRAGRIQE---SASFNNLY--------------------------------------------------------- 144 (354)
Q Consensus 125 ~~~~~~~~~~~~---~~~~~~~~--------------------------------------------------------- 144 (354)
.+.+........ ...+....
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 988775522100 00000000
Q ss_pred -----------------------------ccCCC--chhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeC
Q 036905 145 -----------------------------VKNLD--DDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT 193 (354)
Q Consensus 145 -----------------------------~~~~~--~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~ 193 (354)
....+ .........++|||+||+..+|+++|+++|+.||.|.+|+++.+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~ 242 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC
Confidence 00000 00112234488999999999999999999999999999999976
Q ss_pred CCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEeccC
Q 036905 194 NRGISKGFGFVCFSNPDEANRAINTLNGILFH-QKPLYVAIAQT 236 (354)
Q Consensus 194 ~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~-g~~l~v~~a~~ 236 (354)
+ +|||||+|.+.++|.+|+..|||..|. |+.|+|.|+++
T Consensus 243 ~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 243 R----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred C----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 3 589999999999999999999999999 99999999974
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=4.2e-32 Score=239.94 Aligned_cols=188 Identities=19% Similarity=0.283 Sum_probs=150.8
Q ss_pred cccccccCCCCCCeEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccC
Q 036905 42 SIDVHSAMATPTFIPFTVNLAS-TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE 120 (354)
Q Consensus 42 ~~~~~~~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~ 120 (354)
....+.....++++|||+|||+ ++|+++|+++|+.||.|.+|+++.+. +|||||+|.+.++|++|++.|||..+.
T Consensus 23 ~~~~p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 23 RIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCCGGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CcCCCCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 3334445566789999999999 99999999999999999999999875 789999999999999999999999999
Q ss_pred CeEEEecccccccccccc----------ccccccccCC----Cch-hhhhcCCceEEEeCCCCccCHHHHHHHhhcCC-C
Q 036905 121 GMELYAPSLRAGRIQESA----------SFNNLYVKNL----DDD-VTEEILDKNLYVKNINDDVDEIELKQYFSQCG-I 184 (354)
Q Consensus 121 g~~i~~~~~~~~~~~~~~----------~~~~~~~~~~----~~~-~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G-~ 184 (354)
|+.|.+.+.......... .+........ ... .......++|||+|||..+++++|+++|+.|| .
T Consensus 99 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~ 178 (229)
T 2adc_A 99 GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV 178 (229)
T ss_dssp SSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCC
T ss_pred CeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCC
Confidence 999998776642110000 0000000000 000 01122358999999999999999999999999 9
Q ss_pred eeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEeccCc
Q 036905 185 ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH-QKPLYVAIAQTK 237 (354)
Q Consensus 185 v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~-g~~l~v~~a~~~ 237 (354)
|.+|+++.+ ++|||||+|.+.++|.+|+..|||..|. |++|+|.|++++
T Consensus 179 i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 179 VKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred eeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999764 3789999999999999999999999999 999999999864
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=3.8e-31 Score=241.19 Aligned_cols=157 Identities=23% Similarity=0.317 Sum_probs=145.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
.++++|||+|||+++|+++|+++|+.|| |.+|++ ++++|||||+|.+.++|++|++.|||..+.|+.|.+.+..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 3568999999999999999999999999 999988 5678999999999999999999999999999999977532
Q ss_pred ccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCH
Q 036905 131 AGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNP 209 (354)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~ 209 (354)
...+|||+|||.++|+++|+++|+.||.|.+++++.+. +|.++|||||+|.+.
T Consensus 94 --------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 147 (284)
T 3smz_A 94 --------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKK 147 (284)
T ss_dssp --------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred --------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCH
Confidence 12689999999999999999999999999999999987 899999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeccCchh
Q 036905 210 DEANRAINTLNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 210 ~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~ 239 (354)
++|.+|+..|||..|+|++|.|.++.++..
T Consensus 148 ~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999999999987643
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.8e-31 Score=244.33 Aligned_cols=165 Identities=15% Similarity=0.244 Sum_probs=140.2
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
.......++|||+|||+++|+++|+++|+.||.|.+|+++.+..+ ++|||||+|.+.++|++|++ +||..+.|+.|.+
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v 112 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIV 112 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEE
Confidence 445567899999999999999999999999999999999998855 58999999999999999995 9999999999987
Q ss_pred ccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEEE
Q 036905 127 PSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVC 205 (354)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~v~i~~~~~g~~kg~afV~ 205 (354)
.+.. .++|||+|||..+++++|+++|+.|| .|.+|.++.+..|.++|||||+
T Consensus 113 ~~~~---------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~ 165 (292)
T 2ghp_A 113 SHLT---------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYID 165 (292)
T ss_dssp EECC---------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEE
T ss_pred EECC---------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEE
Confidence 6531 37999999999999999999999999 9999999999888899999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeeEEEEeccCchhh
Q 036905 206 FSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240 (354)
Q Consensus 206 f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~ 240 (354)
|.+.++|.+|+..|||..|.|+.|.|.++.++...
T Consensus 166 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 166 VTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 99999999999999999999999999999876543
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=2.8e-31 Score=239.30 Aligned_cols=160 Identities=23% Similarity=0.345 Sum_probs=145.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
.....++|||+|||+++|+++|+++|+.||.|.+|++.+ ++|||||+|.+.++|.+|+..|||..+.|+.|.+.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 335568999999999999999999999999999999964 489999999999999999999999999999999876
Q ss_pred ccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCC
Q 036905 129 LRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSN 208 (354)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~ 208 (354)
... ..+|||+|||..+|+++|+++|+.||.|.+|.++.+.+|.++|||||+|.+
T Consensus 93 a~~--------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 146 (261)
T 3sde_A 93 ATH--------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAA 146 (261)
T ss_dssp CCC--------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESS
T ss_pred ccc--------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCC
Confidence 542 268999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CceeC---CeeEEEEeccCchh
Q 036905 209 PDEANRAINTLN-GILFH---QKPLYVAIAQTKRE 239 (354)
Q Consensus 209 ~~~A~~Ai~~l~-g~~i~---g~~l~v~~a~~~~~ 239 (354)
.++|.+|+..|| |..+. +++|.|.++.....
T Consensus 147 ~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 147 KPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 999999999994 55554 99999999987653
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=8.5e-32 Score=232.44 Aligned_cols=177 Identities=19% Similarity=0.273 Sum_probs=144.5
Q ss_pred CCeEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 53 TFIPFTVNLAS-TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 53 ~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
+++|||+|||+ ++|+++|+++|+.||.|.+|+++.+. +|||||+|.+.++|++|++.|||..+.|+.|.+.+...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 57999999999 99999999999999999999998875 78999999999999999999999999999999877654
Q ss_pred ccccccc----------ccccccccC----CC-chhhhhcCCceEEEeCCCCccCHHHHHHHhhcCC-CeeEEEEeeCCC
Q 036905 132 GRIQESA----------SFNNLYVKN----LD-DDVTEEILDKNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNR 195 (354)
Q Consensus 132 ~~~~~~~----------~~~~~~~~~----~~-~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~v~i~~~~~ 195 (354)
....... .+....... .. .........++|||+|||..+++++|+++|+.|| .|.+++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 2210000 000000000 00 0001112358999999999999999999999999 9999999775
Q ss_pred CCeeeEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEeccCc
Q 036905 196 GISKGFGFVCFSNPDEANRAINTLNGILFH-QKPLYVAIAQTK 237 (354)
Q Consensus 196 g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~-g~~l~v~~a~~~ 237 (354)
.+|+|||+|.+.++|.+|+..|||..|+ |++|+|.|++++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999999 999999999864
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=1.6e-24 Score=180.09 Aligned_cols=149 Identities=19% Similarity=0.238 Sum_probs=114.4
Q ss_pred EEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE-eccccccccccccccccccccCCCchhhhhcCCce
Q 036905 82 SSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY-APSLRAGRIQESASFNNLYVKNLDDDVTEEILDKN 160 (354)
Q Consensus 82 ~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (354)
+++|+.+.. +++|||||+|.+.++|++|++.+++....+..+. ........... ...............+
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 72 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE--------GSHHHHHHMDVEGMTS 72 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC--------CCCCSSCCCCCCBCCE
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc--------cccccccccCCCCCCE
Confidence 567777763 6899999999999999999999887543333332 11111100000 0000001111233489
Q ss_pred EEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchh
Q 036905 161 LYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 161 l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~ 239 (354)
|||+|||.++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|++|+|.|++++..
T Consensus 73 l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 73 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999999999999997 899999999999999999999999999999999999999987643
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=4.8e-23 Score=161.91 Aligned_cols=110 Identities=33% Similarity=0.445 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
.+++|||+|||+++|+++|+++|+.||.|.+|+|++|. +.++|||||+|.+.++|++||+.|||..+.|+.|.+.+...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 35689999999999999999999999999999999986 45899999999999999999999999999999999877654
Q ss_pred cccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHH
Q 036905 132 GRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174 (354)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~ 174 (354)
....... .........+|||+|||.++|++.
T Consensus 83 ~~~~~~~------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAE------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------------------
T ss_pred ccccccc------------cccccCCCCceEeCCCCCCccccc
Confidence 2211000 001112226799999999999874
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=2.2e-22 Score=165.74 Aligned_cols=139 Identities=22% Similarity=0.287 Sum_probs=112.1
Q ss_pred CCceeEEEEEeecHHHHHHHHHHh-hhCccCCeEEEeccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCc
Q 036905 91 GKSKGYGFVQYSTQESALNAIEKL-YAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDD 169 (354)
Q Consensus 91 g~skg~aFV~F~~~e~A~~Ai~~l-ng~~i~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 169 (354)
...+|+++|+|.+.++|++|++.+ ||..+.| .+.+.+............ ..............++|||+|||.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH----HHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS----SCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc----cccccccccCCCCCCEEEEeCCCCC
Confidence 356899999999999999999999 9999999 888776554221100000 0000111122334489999999999
Q ss_pred cCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 170 VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 170 ~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
+|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|+..|||..|.|++|+|.|++++.
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999999987 68999999999999999999999999999999999998764
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=147.99 Aligned_cols=78 Identities=37% Similarity=0.627 Sum_probs=75.8
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
++|||+|||.++|+++|+++|++||.|.+|++++++ +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.||++
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 789999999999999999999999999999999987 899999999999999999999999999999999999999975
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=146.33 Aligned_cols=79 Identities=27% Similarity=0.425 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
..++|||+|||+++|+++|+++|++||.|.+|++++|+ +|+++|||||+|.+.++|++|++.|||..+.|+.|.|.+.+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35789999999999999999999999999999999998 89999999999999999999999999999999999988764
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=145.91 Aligned_cols=88 Identities=19% Similarity=0.259 Sum_probs=82.2
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+||++++++++|+++|++||.|.+|+|+.+. +|.++|||||+|++.++|.+|++.|||..|.|+.|+|.++..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4799999999999999999999999999999999998 799999999999999999999999999999999999999988
Q ss_pred chhhhHHHH
Q 036905 237 KRERTSYLR 245 (354)
Q Consensus 237 ~~~~~~~~~ 245 (354)
++.+....+
T Consensus 86 ~~~~~~~~~ 94 (110)
T 3s8s_A 86 GQQRMKYYE 94 (110)
T ss_dssp THHHHHHHH
T ss_pred CcHHHHHHH
Confidence 877665443
No 27
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=2.3e-20 Score=154.94 Aligned_cols=128 Identities=18% Similarity=0.275 Sum_probs=104.0
Q ss_pred eeeeccCCCCccceeEEEecCchhhHHHHHHhccc--cc------------------cccccccCCCCCCeEEEcCCCCC
Q 036905 5 LRALNNNDSAILGTPFSLYVGDLDSTDLLRLCSAL--IA------------------SIDVHSAMATPTFIPFTVNLAST 64 (354)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~~~~~~~~~~lfV~nLp~~ 64 (354)
++++. |...+.|++|+.|....+++.+++..... +. ............++|||+|||++
T Consensus 3 ~kl~l-n~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 81 (158)
T 2kn4_A 3 YKLIL-NGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYR 81 (158)
T ss_dssp EEEEE-ECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTT
T ss_pred EEEEe-cCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 34443 34479999999999999998876543210 00 00112233355789999999999
Q ss_pred CcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccccc
Q 036905 65 IDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133 (354)
Q Consensus 65 ~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~ 133 (354)
+|+++|+++|+.||.|.+|+|..|. +|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+....+
T Consensus 82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 82 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999999998 89999999999999999999999999999999999988876543
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=145.03 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
.+.++|||+|||+++|+++|+++|++||.|.+|+|++|. +|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999 8999999999999999999999999999999999998887
Q ss_pred ccc
Q 036905 130 RAG 132 (354)
Q Consensus 130 ~~~ 132 (354)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 653
No 29
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=8.4e-21 Score=142.54 Aligned_cols=81 Identities=20% Similarity=0.360 Sum_probs=75.5
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCC-CeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhC-CceeCCeeEEEEecc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLN-GILFHQKPLYVAIAQ 235 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~-g~~i~g~~l~v~~a~ 235 (354)
++|||+|||.++|+++|+++|++|| .|.+|+|++++ +|.+||||||+|.+.++|.+|++.|+ +..|+|++|+|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 89999999987 89999999999999999999999874 568999999999998
Q ss_pred Cchh
Q 036905 236 TKRE 239 (354)
Q Consensus 236 ~~~~ 239 (354)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7754
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=6.2e-20 Score=144.04 Aligned_cols=84 Identities=33% Similarity=0.628 Sum_probs=76.0
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
.+|||+|||.++|+++|+++|+.||.|.+|+|+.+.. .+||||||+|.+.++|.+|++.|||..|.|++|+|.+++++.
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 6899999999999999999999999999999999864 489999999999999999999999999999999999998877
Q ss_pred hhhHH
Q 036905 239 ERTSY 243 (354)
Q Consensus 239 ~~~~~ 243 (354)
.+...
T Consensus 85 ~~~~~ 89 (115)
T 4f25_A 85 EREAE 89 (115)
T ss_dssp C----
T ss_pred ccccc
Confidence 65443
No 31
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=5.4e-20 Score=153.84 Aligned_cols=140 Identities=20% Similarity=0.294 Sum_probs=79.1
Q ss_pred EEeecHHHHHHHHHHhhhCccC--CeEEEeccccccccccccccccc---cccCCCchhhhhcCCceEEEeCCCCccCHH
Q 036905 99 VQYSTQESALNAIEKLYAATVE--GMELYAPSLRAGRIQESASFNNL---YVKNLDDDVTEEILDKNLYVKNINDDVDEI 173 (354)
Q Consensus 99 V~F~~~e~A~~Ai~~lng~~i~--g~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~ 173 (354)
.+|++.++|+.|+..|++.... |+.....+....+. ..+... ...............++|||+|||..++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~ 87 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAI---HSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQED 87 (165)
T ss_dssp ----------------------------------------------------------CCCCC-CEEEEEESCCTTCCHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccc---cCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHH
Confidence 7899999999999998876544 44443333222110 011111 000000111112334789999999999999
Q ss_pred HHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchhhh
Q 036905 174 ELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRERT 241 (354)
Q Consensus 174 ~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~~ 241 (354)
+|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..|||..|.|++|.|.|+..+..+.
T Consensus 88 ~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 88 EIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999999986 89999999999999999999999999999999999999998876554
No 32
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.7e-19 Score=148.91 Aligned_cols=127 Identities=23% Similarity=0.365 Sum_probs=107.4
Q ss_pred eeeeeccCCCCccceeEEEecCchhhHHHH-HHhccccccc--------cccccCCCCCCeEEEcCCCCCCcHHHHHHHH
Q 036905 4 SLRALNNNDSAILGTPFSLYVGDLDSTDLL-RLCSALIASI--------DVHSAMATPTFIPFTVNLASTIDNWKLHQIF 74 (354)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F 74 (354)
+++.+.+..+.+.|++|+.|....+++.++ .++...+... ........+.++|||+|||.++|+++|+++|
T Consensus 29 ~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 108 (166)
T 3md3_A 29 NIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAF 108 (166)
T ss_dssp EEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHH
T ss_pred EEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHH
Confidence 456666777889999999999999999888 4554444311 1112345567899999999999999999999
Q ss_pred hhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 75 SKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 75 ~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
+.||.|.++++..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.+.+.+
T Consensus 109 ~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 109 KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred hccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999997 89999999999999999999999999999999999988764
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=141.15 Aligned_cols=79 Identities=16% Similarity=0.323 Sum_probs=74.0
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCC--eeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCc----eeCCeeEE
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGI--ISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGI----LFHQKPLY 230 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~--v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~----~i~g~~l~ 230 (354)
-.+|||+|||.++|+++|+++|++||. |.+|++++|+ +|.+||||||+|.+.++|.+|++.|||. .|+||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 379999999999999999999999995 6789999998 8999999999999999999999999996 59999999
Q ss_pred EEeccC
Q 036905 231 VAIAQT 236 (354)
Q Consensus 231 v~~a~~ 236 (354)
|.||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999974
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.9e-19 Score=132.58 Aligned_cols=80 Identities=30% Similarity=0.520 Sum_probs=76.9
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.+|||+|||.++++++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..|+|++|+|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 589999999999999999999999999999999996 8999999999999999999999999999999999999999887
Q ss_pred h
Q 036905 238 R 238 (354)
Q Consensus 238 ~ 238 (354)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=5.9e-20 Score=161.57 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=79.4
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCC--CeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCG--IISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G--~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 233 (354)
..++|||+||++++|+++|+++|+.|| .|.+|+|+.++ +|++||||||+|.+.++|.+||+.|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 347999999999999999999999999 99999999997 999999999999999999999999999999999999999
Q ss_pred ccCchhhhH
Q 036905 234 AQTKRERTS 242 (354)
Q Consensus 234 a~~~~~~~~ 242 (354)
++++.....
T Consensus 147 a~~~~~~~~ 155 (229)
T 3q2s_C 147 VNKQFLSQF 155 (229)
T ss_dssp CCHHHHHHH
T ss_pred CCCCccchh
Confidence 987765443
No 36
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=2.8e-20 Score=150.20 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=79.8
Q ss_pred eEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHH
Q 036905 95 GYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174 (354)
Q Consensus 95 g~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~ 174 (354)
-|+|++|++...+..|+..++|....|+.-.. +. ....+....++|||+|||.++|+++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~-~~--------------------~~~~~~~~~~~l~V~nLp~~~te~~ 63 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSMS-YG--------------------RPPPDVEGMTSLKVDNLTYRTSPDT 63 (135)
T ss_dssp ------------------------------CC-SC--------------------CSCSSGGGCCCEEEECCCSSCHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCCCC-cC--------------------CCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 47889999999999999998876655442110 00 0011122348999999999999999
Q ss_pred HHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchh
Q 036905 175 LKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 175 L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~ 239 (354)
|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|++|+|.|++++..
T Consensus 64 L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 64 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999987 889999999999999999999999999999999999999987654
No 37
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=132.79 Aligned_cols=80 Identities=25% Similarity=0.465 Sum_probs=75.6
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..+.|++|+|.|+++
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 3789999999999999999999999999999999996 899999999999999999999999999999999999999987
Q ss_pred c
Q 036905 237 K 237 (354)
Q Consensus 237 ~ 237 (354)
+
T Consensus 86 k 86 (87)
T 3bs9_A 86 K 86 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 38
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=3e-20 Score=139.49 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcC-CeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHh-hhCccCCeEEEeccc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFG-DIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKL-YAATVEGMELYAPSL 129 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~l-ng~~i~g~~i~~~~~ 129 (354)
+++|||+|||+++|+++|+++|+.|| .|.+|+|++|+ +|.++|||||+|.+.++|++|++.+ ++..+.|+.|.+.+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999998 8999999999999999999999877 567899999998887
Q ss_pred cc
Q 036905 130 RA 131 (354)
Q Consensus 130 ~~ 131 (354)
..
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=136.09 Aligned_cols=83 Identities=18% Similarity=0.412 Sum_probs=79.2
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||.++|+++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.++++
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred chh
Q 036905 237 KRE 239 (354)
Q Consensus 237 ~~~ 239 (354)
+..
T Consensus 96 ~~~ 98 (100)
T 2do4_A 96 GPS 98 (100)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=5.5e-19 Score=133.95 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=80.7
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
+++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 3789999999999999999999999999999999997 789999999999999999999999999999999999999998
Q ss_pred chhhhHH
Q 036905 237 KRERTSY 243 (354)
Q Consensus 237 ~~~~~~~ 243 (354)
+......
T Consensus 82 ~~~~~~~ 88 (96)
T 2x1f_A 82 SDISGVS 88 (96)
T ss_dssp SSGGGHH
T ss_pred CCCCCcc
Confidence 8766543
No 41
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=6.9e-20 Score=137.24 Aligned_cols=81 Identities=20% Similarity=0.275 Sum_probs=71.7
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCC--CeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCG--IISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G--~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
.+|||+|||.++|+++|+++|+.|| .|.+++++.++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999997 89999999999999999999999999999999999999998
Q ss_pred Cchh
Q 036905 236 TKRE 239 (354)
Q Consensus 236 ~~~~ 239 (354)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7654
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=3.6e-19 Score=131.09 Aligned_cols=79 Identities=29% Similarity=0.478 Sum_probs=75.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
+.+|||+|||.++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+...
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4689999999999999999999999999999999997 899999999999999999999999999999999999887654
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=132.59 Aligned_cols=81 Identities=30% Similarity=0.444 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
.+.++|||+|||.++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|++|++.|||..+.|+.|.+.+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 456899999999999999999999999999999999997 9999999999999999999999999999999999998876
Q ss_pred cc
Q 036905 130 RA 131 (354)
Q Consensus 130 ~~ 131 (354)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=137.36 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCC--eeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhC----ccCCeE
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGD--IQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAA----TVEGME 123 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~--i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~----~i~g~~ 123 (354)
..-.+|||+|||+++|+++|+++|++||. |.+|++++|+ +|++||||||+|.+.++|++|++.|||. .|+||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34568999999999999999999999995 6799999998 8999999999999999999999999997 489999
Q ss_pred EEecccc
Q 036905 124 LYAPSLR 130 (354)
Q Consensus 124 i~~~~~~ 130 (354)
|.+.+.+
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9988765
No 45
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=8.6e-20 Score=139.52 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=77.7
Q ss_pred CceEEEeCCCC------ccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC-eeE
Q 036905 158 DKNLYVKNIND------DVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPL 229 (354)
Q Consensus 158 ~~~l~v~nl~~------~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g-~~l 229 (354)
.++|||+|||. ++++++|+++|++||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47999999999 99999999999999999999999998 69999999999999999999999999999999 999
Q ss_pred EEEeccCchh
Q 036905 230 YVAIAQTKRE 239 (354)
Q Consensus 230 ~v~~a~~~~~ 239 (354)
+|.++.+++.
T Consensus 86 ~V~~a~~~~~ 95 (100)
T 3ns6_A 86 FLYTMKDVER 95 (100)
T ss_dssp EEEESHHHHH
T ss_pred EEEECchhhh
Confidence 9999987543
No 46
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=1.3e-19 Score=135.71 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=71.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcC--CeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFG--DIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
.+|||+|||+++|+++|+++|+.|| .|.+|+++.|+ +|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998 99999999999999999999999999999999999987765
Q ss_pred c
Q 036905 131 A 131 (354)
Q Consensus 131 ~ 131 (354)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=2.1e-19 Score=133.00 Aligned_cols=81 Identities=27% Similarity=0.447 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
...+.++|||+|||+++++++|+++|++||.|.+|++..+. +++++|||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34577899999999999999999999999999999999996 89999999999999999999999999999999999987
Q ss_pred cc
Q 036905 128 SL 129 (354)
Q Consensus 128 ~~ 129 (354)
+.
T Consensus 83 ~a 84 (85)
T 3mdf_A 83 LA 84 (85)
T ss_dssp EC
T ss_pred Ec
Confidence 65
No 48
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=135.61 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
...+.++|||+|||+++|+++|+++|+.||.|.+|++..+. +++++|||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45677899999999999999999999999999999999998 99999999999999999999999999999999999988
Q ss_pred cccccc
Q 036905 128 SLRAGR 133 (354)
Q Consensus 128 ~~~~~~ 133 (354)
+.....
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 877643
No 49
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=9.5e-19 Score=137.19 Aligned_cols=87 Identities=28% Similarity=0.407 Sum_probs=80.8
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred eccccccc
Q 036905 126 APSLRAGR 133 (354)
Q Consensus 126 ~~~~~~~~ 133 (354)
+.+.....
T Consensus 89 V~~a~~~~ 96 (115)
T 2dgo_A 89 TNWATRKP 96 (115)
T ss_dssp EEESSCCC
T ss_pred EEEccCCC
Confidence 98877643
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=133.51 Aligned_cols=84 Identities=23% Similarity=0.375 Sum_probs=78.4
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++..+. +++++|||||+|.+.++|++|++.|||..+.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455667899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred ecccc
Q 036905 126 APSLR 130 (354)
Q Consensus 126 ~~~~~ 130 (354)
+.+.+
T Consensus 89 v~~a~ 93 (95)
T 2cqc_A 89 VSGPS 93 (95)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 88765
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=5.5e-19 Score=136.22 Aligned_cols=84 Identities=33% Similarity=0.508 Sum_probs=79.8
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC---eeEEEEe
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ---KPLYVAI 233 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g---~~l~v~~ 233 (354)
..++|||+|||.++++++|+++|+.||.|.+|.|+.+.+|.++|||||+|.+.++|.+|++.|||..+.| ++|+|.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 3589999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred ccCchhh
Q 036905 234 AQTKRER 240 (354)
Q Consensus 234 a~~~~~~ 240 (354)
++.+..+
T Consensus 94 a~~~~~~ 100 (105)
T 2dnh_A 94 ADTDKES 100 (105)
T ss_dssp SCSSCCC
T ss_pred CccCccc
Confidence 9987654
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=136.07 Aligned_cols=85 Identities=28% Similarity=0.487 Sum_probs=79.8
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
...++|||+|||.++++++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 344899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCchhh
Q 036905 235 QTKRER 240 (354)
Q Consensus 235 ~~~~~~ 240 (354)
+++..+
T Consensus 93 ~~~~~~ 98 (103)
T 2cq0_A 93 KPSTNS 98 (103)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 887543
No 53
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.3e-19 Score=133.96 Aligned_cols=85 Identities=19% Similarity=0.299 Sum_probs=79.3
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456688999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 91 ~~a~~ 95 (100)
T 2do4_A 91 AISNS 95 (100)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 87664
No 54
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=1.8e-19 Score=141.40 Aligned_cols=105 Identities=25% Similarity=0.313 Sum_probs=91.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
..++++|||+|||+++|+++|+++|+.||.|.+|++..+ +.++|||||+|.+.++|++|++.|||..+.|+.|.+.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 456789999999999999999999999999999999876 566999999999999999999999999999999998876
Q ss_pred cccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCC
Q 036905 130 RAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGI 184 (354)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~ 184 (354)
...+.. ++++...++++|.++|++||.
T Consensus 83 ~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF----------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT----------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh----------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 542211 356777889999999999984
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=5.1e-19 Score=130.88 Aligned_cols=78 Identities=27% Similarity=0.450 Sum_probs=74.9
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
.++|||+|||.++++++|+++|++||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.||+
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4899999999999999999999999999999999985 88999999999999999999999999999999999999985
No 56
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=3.7e-19 Score=134.92 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
++++|||+|||.++++++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+..
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999998 89999999999999999999999999999999999988877
Q ss_pred ccc
Q 036905 131 AGR 133 (354)
Q Consensus 131 ~~~ 133 (354)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 633
No 57
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.4e-19 Score=135.76 Aligned_cols=83 Identities=53% Similarity=0.890 Sum_probs=79.0
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||.++|+++|+++|+.||.|.+|+++.+ +|.++|||||+|.+.++|.+|+..|||..|.|++|+|.|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 4489999999999999999999999999999999999 899999999999999999999999999999999999999998
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+..+
T Consensus 93 ~~~~ 96 (103)
T 2d9p_A 93 KEER 96 (103)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7654
No 58
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=134.83 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=79.2
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++|+++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.++++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4799999999999999999999999999999999998 899999999999999999999999999999999999999998
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+..+
T Consensus 88 ~~~~ 91 (99)
T 1whw_A 88 KKEA 91 (99)
T ss_dssp CSTT
T ss_pred Cccc
Confidence 7653
No 59
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=133.08 Aligned_cols=82 Identities=27% Similarity=0.413 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
.+.++|||+|||.++|+++|+++|++||.|.+|++..+. +++++|||||+|.+.++|++|++.|||..+.|+.|.+.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999998887
Q ss_pred ccc
Q 036905 130 RAG 132 (354)
Q Consensus 130 ~~~ 132 (354)
...
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 653
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=5.1e-19 Score=138.77 Aligned_cols=84 Identities=30% Similarity=0.519 Sum_probs=79.5
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.|++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 34899999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
++..+
T Consensus 104 ~~~~~ 108 (115)
T 2cpz_A 104 SKNDS 108 (115)
T ss_dssp CSCCC
T ss_pred CCCcC
Confidence 87653
No 61
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=133.67 Aligned_cols=83 Identities=30% Similarity=0.571 Sum_probs=78.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.++++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 3799999999999999999999999999999999987 799999999999999999999999999999999999999987
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+..+
T Consensus 85 ~~~~ 88 (95)
T 2dnz_A 85 RLDG 88 (95)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7543
No 62
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=136.43 Aligned_cols=81 Identities=22% Similarity=0.396 Sum_probs=77.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++++++|+++|+.||.|.+|.++.+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 3789999999999999999999999999999999987 799999999999999999999999999999999999999987
Q ss_pred ch
Q 036905 237 KR 238 (354)
Q Consensus 237 ~~ 238 (354)
+.
T Consensus 103 ~~ 104 (106)
T 1p27_B 103 RG 104 (106)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 63
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=144.23 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=79.6
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCC--CeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCG--IISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G--~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
.++|||+||++++|+++|+++|+.|| .|.+|+|+.+. +|.++|||||+|.+.++|.+||+.|||..|+|++|+|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 47999999999999999999999999 99999999997 8999999999999999999999999999999999999999
Q ss_pred cCchhhhH
Q 036905 235 QTKRERTS 242 (354)
Q Consensus 235 ~~~~~~~~ 242 (354)
.++.....
T Consensus 135 ~~~~~~~~ 142 (156)
T 3n9u_C 135 TRQNLSQF 142 (156)
T ss_dssp CHHHHHHH
T ss_pred CCCcchhh
Confidence 88765443
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=1.1e-18 Score=136.86 Aligned_cols=84 Identities=25% Similarity=0.440 Sum_probs=79.3
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||..+++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34899999999999999999999999999999999996 89999999999999999999999999999999999999998
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
++..+
T Consensus 94 ~~~~~ 98 (115)
T 2dgo_A 94 RKPPA 98 (115)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77543
No 65
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=9.5e-19 Score=137.19 Aligned_cols=85 Identities=26% Similarity=0.344 Sum_probs=79.2
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +++++|||||+|.+.++|++|++.|||..|.|+.|.+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred cccccc
Q 036905 127 PSLRAG 132 (354)
Q Consensus 127 ~~~~~~ 132 (354)
.+....
T Consensus 100 ~~a~~~ 105 (115)
T 2cpz_A 100 QLKRSK 105 (115)
T ss_dssp ECCCCS
T ss_pred EEcCCC
Confidence 887653
No 66
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=132.15 Aligned_cols=80 Identities=35% Similarity=0.624 Sum_probs=76.6
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||..+++++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|++.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 34899999999999999999999999999999999998899999999999999999999999999999999999999864
No 67
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=134.11 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=72.0
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce--eCCeeEEEEe
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL--FHQKPLYVAI 233 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~--i~g~~l~v~~ 233 (354)
.++++|||+|||+++|+++|+++|++||.|.+|+++++ ||||||+|++.++|.+|++.|++.. |.|++|+|.|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 34589999999999999999999999999999999864 7899999999999999999999875 7899999999
Q ss_pred ccCch
Q 036905 234 AQTKR 238 (354)
Q Consensus 234 a~~~~ 238 (354)
++.++
T Consensus 94 S~~k~ 98 (100)
T 3r27_A 94 STSQK 98 (100)
T ss_dssp CSCSC
T ss_pred ccccc
Confidence 98775
No 68
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=131.77 Aligned_cols=79 Identities=29% Similarity=0.405 Sum_probs=75.8
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++++++|+++|+.||.|.+|.++.+. ++.++|||||+|.+.++|.+|+..|||..|.|++|+|.|++.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 4899999999999999999999999999999999987 689999999999999999999999999999999999999874
No 69
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=133.30 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...+.++|||+|||+++++++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cc
Q 036905 129 LR 130 (354)
Q Consensus 129 ~~ 130 (354)
.+
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 70
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=134.26 Aligned_cols=83 Identities=23% Similarity=0.501 Sum_probs=78.1
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||.++++++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|++ ||+..|.|++|+|.+++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 34899999999999999999999999999999999987 78999999999999999999998 99999999999999999
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
++..+
T Consensus 88 ~~~~~ 92 (99)
T 2dgs_A 88 PRDSK 92 (99)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 87654
No 71
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.7e-19 Score=135.25 Aligned_cols=85 Identities=21% Similarity=0.319 Sum_probs=79.6
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|..++ ++.++|||||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 455678999999999999999999999999999999999997 8999999999999999999999999999999999998
Q ss_pred cccccc
Q 036905 127 PSLRAG 132 (354)
Q Consensus 127 ~~~~~~ 132 (354)
.+....
T Consensus 90 ~~a~~~ 95 (103)
T 2cq0_A 90 EWAKPS 95 (103)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 887653
No 72
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.8e-19 Score=133.20 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=76.8
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||+++++++|+++|+.||.|.+|++..++ +++++|||||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345567899999999999999999999999999999999998 7999999999999999999999999999999999998
Q ss_pred ccc
Q 036905 127 PSL 129 (354)
Q Consensus 127 ~~~ 129 (354)
.+.
T Consensus 91 ~~a 93 (94)
T 2e5h_A 91 SIA 93 (94)
T ss_dssp EEC
T ss_pred Eec
Confidence 765
No 73
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-19 Score=136.01 Aligned_cols=87 Identities=28% Similarity=0.443 Sum_probs=80.4
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +++++|||||+|.+.++|++|++.|||..+.|+.|.
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3456678999999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred eccccccc
Q 036905 126 APSLRAGR 133 (354)
Q Consensus 126 ~~~~~~~~ 133 (354)
+.+.....
T Consensus 86 V~~a~~~~ 93 (102)
T 2cqb_A 86 VNLAKPMR 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 88876633
No 74
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=2.9e-18 Score=149.10 Aligned_cols=127 Identities=18% Similarity=0.288 Sum_probs=104.5
Q ss_pred eeeecc-CCCCccceeEEEecCchhhHHHHH-Hhccccccccccc-----------------cCCCCCCeEEEcCCCCCC
Q 036905 5 LRALNN-NDSAILGTPFSLYVGDLDSTDLLR-LCSALIASIDVHS-----------------AMATPTFIPFTVNLASTI 65 (354)
Q Consensus 5 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~lfV~nLp~~~ 65 (354)
++.+.. ..+.+.|++|+.|.+..+++.+++ ++...+....+.. ......++|||+|||.++
T Consensus 58 v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 137 (216)
T 2qfj_A 58 IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDL 137 (216)
T ss_dssp EEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTC
T ss_pred EEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcC
Confidence 344433 366789999999999999998887 5544443221111 122456899999999999
Q ss_pred cHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 66 DNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 66 te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|.+|++.|||..|+|+.|.+.+...
T Consensus 138 t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 138 SDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp CHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred CHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 999999999999999999999997 899999999999999999999999999999999999887665
No 75
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.8e-19 Score=133.57 Aligned_cols=83 Identities=14% Similarity=0.330 Sum_probs=77.7
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||.++|+++|+++|+.||.|.+|+++.+. +++++|||||+|.+.++|++|++ ||+..+.|+.|.+
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345677999999999999999999999999999999999998 89999999999999999999998 9999999999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 84 ~~a~~ 88 (99)
T 2dgs_A 84 KRAEP 88 (99)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 88765
No 76
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-19 Score=134.91 Aligned_cols=86 Identities=27% Similarity=0.436 Sum_probs=79.8
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+++.+. ++.++|||||+|.+.++|++|++.|||..+.|+.|.
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3455678999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred ecccccc
Q 036905 126 APSLRAG 132 (354)
Q Consensus 126 ~~~~~~~ 132 (354)
+.+....
T Consensus 86 v~~a~~~ 92 (102)
T 1x5s_A 86 VDQAGKS 92 (102)
T ss_dssp EEEEECC
T ss_pred EEECCCC
Confidence 8887653
No 77
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.78 E-value=6.7e-19 Score=147.62 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=100.9
Q ss_pred CCCccceeEEEecCchhhHHHHHHhcccccccccc------ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEE
Q 036905 12 DSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVH------SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKV 85 (354)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v 85 (354)
...+.|++|+.|.+..+++.++.++...+....+. .......++|||+|||+++|+++|+++|++||.|.+|++
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 126 (172)
T 2g4b_A 47 INQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 126 (172)
T ss_dssp EETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred ecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEE
Confidence 34568999999999999998886655555422211 222344689999999999999999999999999999999
Q ss_pred EeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 86 VVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 86 ~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.+.++
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 127 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9997 9999999999999999999999999999999999998764
No 78
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=136.04 Aligned_cols=85 Identities=27% Similarity=0.457 Sum_probs=79.9
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
...++|||+|||.++++++|+++|+.||.|.+|.++.+. ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 344899999999999999999999999999999999988 8999999999999999999999999999999999999999
Q ss_pred cCchhh
Q 036905 235 QTKRER 240 (354)
Q Consensus 235 ~~~~~~ 240 (354)
+++..+
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 887643
No 79
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.4e-18 Score=133.90 Aligned_cols=85 Identities=24% Similarity=0.287 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCC---eEEE
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG---MELY 125 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g---~~i~ 125 (354)
...+.++|||+|||+++|+++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|++|++.|||..+.| +.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999988 9999
Q ss_pred eccccccc
Q 036905 126 APSLRAGR 133 (354)
Q Consensus 126 ~~~~~~~~ 133 (354)
+.+.....
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 88876533
No 80
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-19 Score=134.51 Aligned_cols=85 Identities=28% Similarity=0.516 Sum_probs=80.5
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
++|||+|||..+++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.++
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 799999999999999999999999999999999987 8999999999999999999999999999999999999999988
Q ss_pred hhhhHH
Q 036905 238 RERTSY 243 (354)
Q Consensus 238 ~~~~~~ 243 (354)
..+...
T Consensus 89 ~~~~~~ 94 (104)
T 1p1t_A 89 KNKEEL 94 (104)
T ss_dssp THHHHH
T ss_pred cchhhh
Confidence 776543
No 81
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=136.31 Aligned_cols=87 Identities=21% Similarity=0.317 Sum_probs=80.4
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+|..+. ++.++|||||+|.+.++|++|++.|||..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3455678999999999999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred eccccccc
Q 036905 126 APSLRAGR 133 (354)
Q Consensus 126 ~~~~~~~~ 133 (354)
+.+....+
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 88877633
No 82
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=138.13 Aligned_cols=82 Identities=30% Similarity=0.534 Sum_probs=78.4
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||.++|+++|+++|+.||.|.+|.|+.+.+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ch
Q 036905 237 KR 238 (354)
Q Consensus 237 ~~ 238 (354)
+.
T Consensus 86 ~~ 87 (116)
T 2fy1_A 86 PS 87 (116)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 83
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=3e-19 Score=149.06 Aligned_cols=125 Identities=14% Similarity=0.265 Sum_probs=102.2
Q ss_pred eeeecc-CCCCccceeEEEecCchhhHHHHHH----hccccc-cccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcC
Q 036905 5 LRALNN-NDSAILGTPFSLYVGDLDSTDLLRL----CSALIA-SIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFG 78 (354)
Q Consensus 5 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G 78 (354)
++.+.+ ..+.+.|++|+.|.+..+++.++.. ....+. ............++|||+|||.++|+++|+++|+.||
T Consensus 33 v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G 112 (167)
T 2cjk_A 33 LKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWG 112 (167)
T ss_dssp EECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCc
Confidence 444444 4678899999999999999988874 222222 1111122233467999999999999999999999999
Q ss_pred CeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 79 DIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 79 ~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
.|.+|++..+. +|.++|||||+|.+.++|.+|++ ++|..++|+.|.+.+..
T Consensus 113 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 113 TIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp CCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred cEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 99999999997 89999999999999999999998 89999999999987754
No 84
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=132.68 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=76.6
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeE--------EEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCc
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQS--------SKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAAT 118 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~ 118 (354)
....+.++|||+|||+++|+++|+++|++||.|.+ |++..++ +|+++|||||+|.+.++|++|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34566789999999999999999999999999999 9999997 89999999999999999999999999999
Q ss_pred cCCeEEEeccc
Q 036905 119 VEGMELYAPSL 129 (354)
Q Consensus 119 i~g~~i~~~~~ 129 (354)
+.|+.|.+.+.
T Consensus 88 ~~g~~l~V~~A 98 (99)
T 2la6_A 88 FSGNPIKVSFA 98 (99)
T ss_dssp SSSSBCEEEEC
T ss_pred eCCcEEEEEec
Confidence 99999987764
No 85
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-19 Score=134.06 Aligned_cols=83 Identities=33% Similarity=0.594 Sum_probs=78.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEE-EEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSV-KIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v-~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
.++|||+|||.++++++|+++|+.||.|.++ +|+.+. +|.++|||||+|.+.++|.+|+..|||..|.|++|+|.|+.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 3799999999999999999999999999999 999985 89999999999999999999999999999999999999998
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
++..+
T Consensus 85 ~~~~~ 89 (96)
T 1x5t_A 85 KKDSK 89 (96)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87644
No 86
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=3.3e-18 Score=142.70 Aligned_cols=124 Identities=24% Similarity=0.389 Sum_probs=103.5
Q ss_pred eeeecc-CCCCccceeEEEecCchhhHHHHH-Hhccccc------cccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhh
Q 036905 5 LRALNN-NDSAILGTPFSLYVGDLDSTDLLR-LCSALIA------SIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSK 76 (354)
Q Consensus 5 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~ 76 (354)
++.+.. ..+.+.|++|+.|.+..+++.+++ ++...+. ............++|||+|||.++|+++|+++|+.
T Consensus 33 v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 112 (168)
T 1b7f_A 33 CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGK 112 (168)
T ss_dssp EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTS
T ss_pred EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhc
Confidence 344443 467788999999999999998886 4544443 22222344566889999999999999999999999
Q ss_pred cCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCC--eEEEecc
Q 036905 77 FGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEG--MELYAPS 128 (354)
Q Consensus 77 ~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g--~~i~~~~ 128 (354)
||.|.++++..+. +|.++|||||+|.+.++|.+|++.|||..+.| +.|.+.+
T Consensus 113 ~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 113 YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 9999999999998 99999999999999999999999999999977 8877665
No 87
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=132.29 Aligned_cols=78 Identities=28% Similarity=0.546 Sum_probs=75.0
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeE--------EEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISS--------VKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--------v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 228 (354)
.++|||+|||.++++++|+++|+.||.|.+ ++++.++ +|.++|||||+|.+.++|.+|++.|||..|.|++
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 489999999999999999999999999999 9999986 8999999999999999999999999999999999
Q ss_pred EEEEecc
Q 036905 229 LYVAIAQ 235 (354)
Q Consensus 229 l~v~~a~ 235 (354)
|+|.+|+
T Consensus 93 l~V~~A~ 99 (99)
T 2la6_A 93 IKVSFAT 99 (99)
T ss_dssp CEEEECC
T ss_pred EEEEecC
Confidence 9999985
No 88
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=135.27 Aligned_cols=82 Identities=30% Similarity=0.541 Sum_probs=78.0
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||..+++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.+++
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 34899999999999999999999999999999999986 88999999999999999999999999999999999999998
Q ss_pred Cch
Q 036905 236 TKR 238 (354)
Q Consensus 236 ~~~ 238 (354)
++.
T Consensus 105 ~k~ 107 (108)
T 2jrs_A 105 ERT 107 (108)
T ss_dssp SSC
T ss_pred cCC
Confidence 774
No 89
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=3e-18 Score=142.68 Aligned_cols=124 Identities=23% Similarity=0.373 Sum_probs=102.1
Q ss_pred eeeeccC-CCCccceeEEEecCchhhHHHHH-Hhcccccc------ccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhh
Q 036905 5 LRALNNN-DSAILGTPFSLYVGDLDSTDLLR-LCSALIAS------IDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSK 76 (354)
Q Consensus 5 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~ 76 (354)
++.+... .+.+.|++|+.|.+..+++.+++ ++...+.. ...........++|||+|||.++|+++|+++|+.
T Consensus 32 v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 111 (167)
T 1fxl_A 32 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 111 (167)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGG
T ss_pred EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHh
Confidence 4445444 67788999999999999998887 45444432 1122333445789999999999999999999999
Q ss_pred cCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeE--EEecc
Q 036905 77 FGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGME--LYAPS 128 (354)
Q Consensus 77 ~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~--i~~~~ 128 (354)
||.|.++++..+. +|.++|||||+|.+.++|.+|++.|||..+.|+. |.+.|
T Consensus 112 ~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 112 YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 9999999999998 8999999999999999999999999999999975 44544
No 90
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=4.7e-19 Score=129.41 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=69.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..|||+||++.+|+++|+++|.+||+|.++++.. +||||||+|.+.++|.+|++.|||..+.|++|+|.+|.
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 6799999999999999999999999999999976 58999999999999999999999999999999999994
No 91
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-19 Score=135.71 Aligned_cols=84 Identities=26% Similarity=0.426 Sum_probs=79.0
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.|++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 34899999999999999999999999999999999986 78999999999999999999999999999999999999998
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
++..+
T Consensus 91 ~~~~~ 95 (102)
T 2cqb_A 91 PMRIK 95 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87644
No 92
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=8.4e-19 Score=136.37 Aligned_cols=83 Identities=24% Similarity=0.386 Sum_probs=78.6
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||..+|+++|+++|+.||.|.+|.++.+. +|.++|||||+|.+.++|.+|+..|||..|.|++|+|.|+++
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 4799999999999999999999999999999999986 899999999999999999999999999999999999999987
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+..+
T Consensus 106 ~~~~ 109 (110)
T 1oo0_B 106 KGPK 109 (110)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7643
No 93
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=135.23 Aligned_cols=82 Identities=30% Similarity=0.525 Sum_probs=78.1
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ch
Q 036905 237 KR 238 (354)
Q Consensus 237 ~~ 238 (354)
..
T Consensus 94 ~~ 95 (114)
T 2do0_A 94 AL 95 (114)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 94
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=133.32 Aligned_cols=85 Identities=32% Similarity=0.499 Sum_probs=79.0
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++..+ +|.++|||||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567899999999999999999999999999999999999 8999999999999999999999999999999999998
Q ss_pred cccccc
Q 036905 127 PSLRAG 132 (354)
Q Consensus 127 ~~~~~~ 132 (354)
.+....
T Consensus 88 ~~a~~~ 93 (103)
T 2d9p_A 88 ALAQRK 93 (103)
T ss_dssp EECSSC
T ss_pred EEeccc
Confidence 887663
No 95
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=131.50 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=75.3
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||.++++++|+++|+.||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.||+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 34899999999999999999999999999999999987 68899999999999999999999999999999999999985
No 96
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=2.3e-19 Score=137.10 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCC------CCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCC-e
Q 036905 51 TPTFIPFTVNLAS------TIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEG-M 122 (354)
Q Consensus 51 ~~~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g-~ 122 (354)
..+++|||+|||. ++++++|+++|++||.|.+|+|++|+ +|+++|||||+|.+.++|++|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999 79999999999999999999999999999999 9
Q ss_pred EEEeccccc
Q 036905 123 ELYAPSLRA 131 (354)
Q Consensus 123 ~i~~~~~~~ 131 (354)
.|.+.+...
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999877643
No 97
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.9e-19 Score=135.02 Aligned_cols=86 Identities=19% Similarity=0.296 Sum_probs=80.1
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++..+. ++.++|||||+|.+.++|++|++.|||..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3455678999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred ecccccc
Q 036905 126 APSLRAG 132 (354)
Q Consensus 126 ~~~~~~~ 132 (354)
+.+....
T Consensus 89 v~~a~~~ 95 (105)
T 1x5u_A 89 VNKASAH 95 (105)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 8887653
No 98
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7.8e-19 Score=133.84 Aligned_cols=83 Identities=17% Similarity=0.286 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCee-EEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeE---
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQ-SSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGME--- 123 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~--- 123 (354)
...+.++|||+|||+++|+++|+++|++||.|. +|++++++ +|+++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345678999999999999999999999999999 99999998 9999999999999999999999999999999998
Q ss_pred -EEeccccc
Q 036905 124 -LYAPSLRA 131 (354)
Q Consensus 124 -i~~~~~~~ 131 (354)
|.+.+.+.
T Consensus 85 ~l~v~~a~~ 93 (99)
T 2div_A 85 RFKLNYATY 93 (99)
T ss_dssp ECCEEETTC
T ss_pred eEEEeecCC
Confidence 77777654
No 99
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=132.85 Aligned_cols=84 Identities=30% Similarity=0.395 Sum_probs=77.6
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
...++|||+|||..+++++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|.+|+..|||..|.|++|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34589999999999999999999999999999999998644 68999999999999999999999999999999999998
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
.+..+
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 87644
No 100
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.4e-19 Score=131.26 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
.+.++|||+|||+++++++|+++|+.||.|.+|++..++ +|.++|||||+|.+.++|++|++.|||..+.|+.+.+.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 567899999999999999999999999999999999997 8999999999999999999999999999999998876553
No 101
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=134.22 Aligned_cols=83 Identities=22% Similarity=0.371 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
...+.++|||+|||+++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34566899999999999999999999999999999999998 89999999999999999999999999999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 99 ~a~~ 102 (106)
T 1p27_B 99 WCFV 102 (106)
T ss_dssp ESEE
T ss_pred eecC
Confidence 7654
No 102
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=2e-18 Score=128.78 Aligned_cols=78 Identities=27% Similarity=0.551 Sum_probs=75.3
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+++++
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 799999999999999999999999999999999987 8999999999999999999999 89999999999999999764
No 103
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=9.8e-19 Score=139.91 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=80.0
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++++++ +|+++|||||+|.+.++|++||+.|||..|.|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4455678999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred ecccccc
Q 036905 126 APSLRAG 132 (354)
Q Consensus 126 ~~~~~~~ 132 (354)
+.+....
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 8887653
No 104
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6e-19 Score=135.25 Aligned_cols=83 Identities=33% Similarity=0.526 Sum_probs=78.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++++++|+++|+.||.|.+|+++.+. ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.++++
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4899999999999999999999999999999999987 788999999999999999999999999999999999999987
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+...
T Consensus 92 ~~~~ 95 (102)
T 1x5s_A 92 SSDN 95 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 105
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=132.30 Aligned_cols=83 Identities=37% Similarity=0.537 Sum_probs=77.4
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 3489999999999999999999999999999999998755 899999999999999999999999999999999999988
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+..+
T Consensus 93 ~~~~ 96 (103)
T 2cq3_A 93 RVMT 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 106
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=9.4e-19 Score=130.27 Aligned_cols=81 Identities=21% Similarity=0.380 Sum_probs=75.5
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCC-eeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGI-SKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~-~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
++|||+|||.++|+++|+++|+.||.|.++.++.+. ++. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.++.+
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 789999999999999999999999999999999887 333 899999999999999999999999999999999999987
Q ss_pred chh
Q 036905 237 KRE 239 (354)
Q Consensus 237 ~~~ 239 (354)
...
T Consensus 85 ~~~ 87 (88)
T 4a8x_A 85 PWP 87 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 107
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=1.1e-18 Score=134.80 Aligned_cols=87 Identities=22% Similarity=0.332 Sum_probs=79.5
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCcc---CCe
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATV---EGM 122 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i---~g~ 122 (354)
.....+.++|||+|||.++|+++|+++|++||.|.+|+|+.+. +|+++|||||+|.+.++|++|++.|||..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 3455678899999999999999999999999999999999998 899999999999999999999999999987 889
Q ss_pred EEEeccccccc
Q 036905 123 ELYAPSLRAGR 133 (354)
Q Consensus 123 ~i~~~~~~~~~ 133 (354)
.|.+.+.....
T Consensus 87 ~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 PIQVKPADSES 97 (106)
T ss_dssp CCEEEECCCCS
T ss_pred eEEEEECCccc
Confidence 99988876533
No 108
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=1.5e-18 Score=151.07 Aligned_cols=127 Identities=31% Similarity=0.423 Sum_probs=102.9
Q ss_pred eeeeecc-CCCCccceeEEEecCchhhHHHHHHhc-cccccc--ccc------ccCCCCCCeEEEcCCCCCCcHHHHHHH
Q 036905 4 SLRALNN-NDSAILGTPFSLYVGDLDSTDLLRLCS-ALIASI--DVH------SAMATPTFIPFTVNLASTIDNWKLHQI 73 (354)
Q Consensus 4 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~------~~~~~~~~~lfV~nLp~~~te~~L~~~ 73 (354)
+++++.+ ..+.+.|++|+.|....+++.+++... ..+... ... .......++|||+|||+++|+++|+++
T Consensus 44 ~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 123 (213)
T 4f02_A 44 SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT 123 (213)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHH
T ss_pred EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHH
Confidence 4555543 457889999999999999998876544 333211 111 112224679999999999999999999
Q ss_pred HhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 74 FSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 74 F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
|+.||.|.+|+|++|. +.++|||||+|.+.++|++|++.|||..|+|+.|.|.+...
T Consensus 124 F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 124 FSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 9999999999999986 44799999999999999999999999999999999887654
No 109
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=134.80 Aligned_cols=84 Identities=27% Similarity=0.445 Sum_probs=78.3
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||.++|+++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445667899999999999999999999999999999999997 8999999999999999999999999999999999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 101 ~~a~~ 105 (108)
T 2jrs_A 101 GHVTE 105 (108)
T ss_dssp ECSCS
T ss_pred EEccc
Confidence 87654
No 110
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=134.14 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+.+|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 91 a~~ 93 (114)
T 2do0_A 91 DER 93 (114)
T ss_dssp CSC
T ss_pred ccc
Confidence 765
No 111
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=136.65 Aligned_cols=83 Identities=19% Similarity=0.328 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
....++|||+|||+++|+++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred ccc
Q 036905 130 RAG 132 (354)
Q Consensus 130 ~~~ 132 (354)
...
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 763
No 112
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.1e-19 Score=134.77 Aligned_cols=83 Identities=25% Similarity=0.363 Sum_probs=78.4
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||.++++++|+++|+.||.|.+|.|+.+. ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.+++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 34899999999999999999999999999999999987 68999999999999999999999999999999999999998
Q ss_pred Cchh
Q 036905 236 TKRE 239 (354)
Q Consensus 236 ~~~~ 239 (354)
.+..
T Consensus 92 ~~~~ 95 (103)
T 2dnm_A 92 YGRR 95 (103)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 7653
No 113
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.3e-19 Score=133.17 Aligned_cols=81 Identities=26% Similarity=0.345 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEE-EEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSS-KVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
.+.++|||+|||+++|+++|+++|+.||.|.+| +|..++ +|.++|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 999996 999999999999999999999999999999999999888
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 765
No 114
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=2.8e-18 Score=132.70 Aligned_cols=79 Identities=20% Similarity=0.409 Sum_probs=76.3
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||..+|+++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 3489999999999999999999999999999999999999999999999999999999999999999999999999986
No 115
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.9e-18 Score=133.60 Aligned_cols=83 Identities=18% Similarity=0.321 Sum_probs=77.7
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+.+|+++|||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccc
Q 036905 128 SLR 130 (354)
Q Consensus 128 ~~~ 130 (354)
+..
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 653
No 116
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=131.88 Aligned_cols=82 Identities=34% Similarity=0.587 Sum_probs=76.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCC--C--CeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNR--G--ISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~--g--~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 233 (354)
.++|||+|||.++++++|+++|+.||.|.+|.++.+.. | .++|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 37999999999999999999999999999999998763 4 8899999999999999999999999999999999999
Q ss_pred ccCchh
Q 036905 234 AQTKRE 239 (354)
Q Consensus 234 a~~~~~ 239 (354)
++++..
T Consensus 85 a~~~~~ 90 (98)
T 2cpf_A 85 SERATK 90 (98)
T ss_dssp SSCSSC
T ss_pred ccCCCC
Confidence 987754
No 117
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=8.1e-19 Score=135.00 Aligned_cols=84 Identities=30% Similarity=0.528 Sum_probs=79.3
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhc-CCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce-eCCeeEEEEec
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQ-CGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL-FHQKPLYVAIA 234 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~-~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~-i~g~~l~v~~a 234 (354)
..++|||+|||.++|+++|+++|+. ||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||.. |.|++|+|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 3489999999999999999999999 999999999999999999999999999999999999999999 99999999999
Q ss_pred cCchhh
Q 036905 235 QTKRER 240 (354)
Q Consensus 235 ~~~~~~ 240 (354)
.++..+
T Consensus 88 ~~~~~~ 93 (104)
T 2dhg_A 88 IPKASR 93 (104)
T ss_dssp CCCCSC
T ss_pred cCCCcC
Confidence 877544
No 118
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=132.99 Aligned_cols=83 Identities=25% Similarity=0.418 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhh-cCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCc-cCCeEEEe
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSK-FGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT-VEGMELYA 126 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~-i~g~~i~~ 126 (354)
...+.++|||+|||+++|+++|+++|+. ||.|.+|+|+.+.+|+++|||||+|.+.++|++|++.|||.. +.|+.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4456789999999999999999999999 999999999999999999999999999999999999999999 99999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 85 ~~a~~ 89 (104)
T 2dhg_A 85 SVAIP 89 (104)
T ss_dssp CBCCC
T ss_pred EEccC
Confidence 88755
No 119
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.8e-19 Score=135.47 Aligned_cols=82 Identities=12% Similarity=0.070 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++|..|.++|||||+|.+.++|++|+. ++|..+.|+.|.+.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3455689999999999999999999999999999999999889999999999999999999998 899999999999876
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 554
No 120
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=134.26 Aligned_cols=85 Identities=25% Similarity=0.453 Sum_probs=79.2
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeC-C-CCCeeeEEEEEeCCHHHHHHHHHHh-CCceeCCeeEEEE
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRT-N-RGISKGFGFVCFSNPDEANRAINTL-NGILFHQKPLYVA 232 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~-~-~g~~kg~afV~f~~~~~A~~Ai~~l-~g~~i~g~~l~v~ 232 (354)
...++|||+|||..+++++|+++|+.||.|.+|+|+.+ . +|.++|||||+|.+.++|.+|+..| ||..|.|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34489999999999999999999999999999999998 3 8899999999999999999999999 9999999999999
Q ss_pred eccCchhh
Q 036905 233 IAQTKRER 240 (354)
Q Consensus 233 ~a~~~~~~ 240 (354)
|++++...
T Consensus 93 ~a~~~~~~ 100 (107)
T 2cph_A 93 WADSEVTV 100 (107)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887543
No 121
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.77 E-value=3.2e-18 Score=143.70 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=101.7
Q ss_pred eeeeeccCCC---CccceeEEEecCchhhHHHHHHhc-cccc-----c-----ccccccCCCCCCeEEEcCCCCCCcHHH
Q 036905 4 SLRALNNNDS---AILGTPFSLYVGDLDSTDLLRLCS-ALIA-----S-----IDVHSAMATPTFIPFTVNLASTIDNWK 69 (354)
Q Consensus 4 ~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~-~~~~-----~-----~~~~~~~~~~~~~lfV~nLp~~~te~~ 69 (354)
+++.+....+ .+.|++|+.|....+++.+++... ..+. . ...........++|||+|||+++|+++
T Consensus 32 ~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~ 111 (175)
T 3nmr_A 32 EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTEND 111 (175)
T ss_dssp EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHH
T ss_pred EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHH
Confidence 3455555555 789999999999999998876433 2221 1 111223334678999999999999999
Q ss_pred HHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCC---eEEEeccc
Q 036905 70 LHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG---MELYAPSL 129 (354)
Q Consensus 70 L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g---~~i~~~~~ 129 (354)
|+++|+.||.|.+|++..+.+|.++|||||+|.+.++|.+|++.|||..+.+ +.|.+.|.
T Consensus 112 l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 112 IRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 9999999999999999999999999999999999999999999999987763 88877653
No 122
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=135.24 Aligned_cols=84 Identities=24% Similarity=0.404 Sum_probs=79.1
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhC------CceeCCeeE
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLN------GILFHQKPL 229 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~------g~~i~g~~l 229 (354)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+..|| |..|.|++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l 93 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL 93 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEE
Confidence 34899999999999999999999999999999999987 78899999999999999999999999 999999999
Q ss_pred EEEeccCchhh
Q 036905 230 YVAIAQTKRER 240 (354)
Q Consensus 230 ~v~~a~~~~~~ 240 (354)
+|.|+.++..+
T Consensus 94 ~v~~a~~~~~~ 104 (111)
T 1x4h_A 94 KVDLAVTRDEA 104 (111)
T ss_dssp EEECCCCCCCC
T ss_pred EEEECCCCccC
Confidence 99999887544
No 123
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.3e-19 Score=134.58 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=75.4
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
++|||+|||.++|+++|+++|+.||.|.+|.|+++..|.++|||||+|.+.++|.+|+. +||..|.|+.|.|.++....
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~~~ 90 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDDYF 90 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchHHH
Confidence 79999999999999999999999999999999999889999999999999999999999 89999999999999987643
No 124
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2.5e-18 Score=129.10 Aligned_cols=83 Identities=23% Similarity=0.296 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...+.++|||+|||+++|+++|+++|++||.|.+|++..+ +|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999999999985 789999999999999999999999999999999999887
Q ss_pred cccc
Q 036905 129 LRAG 132 (354)
Q Consensus 129 ~~~~ 132 (354)
.+..
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 7653
No 125
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.7e-19 Score=134.52 Aligned_cols=78 Identities=17% Similarity=0.342 Sum_probs=72.3
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--ceeCCeeEEEEecc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG--ILFHQKPLYVAIAQ 235 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g--~~i~g~~l~v~~a~ 235 (354)
.++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.|++ ..|.|++|+|.||+
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 489999999999999999999999999999999986 79999999999999999998864 78999999999998
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
.+...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 77654
No 126
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=140.02 Aligned_cols=85 Identities=40% Similarity=0.566 Sum_probs=79.9
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 445899999999999999999999999999999999987 7899999999999999999999999999999999999999
Q ss_pred cCchhh
Q 036905 235 QTKRER 240 (354)
Q Consensus 235 ~~~~~~ 240 (354)
+++..+
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987654
No 127
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=133.94 Aligned_cols=84 Identities=25% Similarity=0.344 Sum_probs=78.8
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhh------hCccC
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLY------AATVE 120 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~ln------g~~i~ 120 (354)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|++|++.|| +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678899999999999999999999999999999999998 89999999999999999999999999 99999
Q ss_pred CeEEEeccccc
Q 036905 121 GMELYAPSLRA 131 (354)
Q Consensus 121 g~~i~~~~~~~ 131 (354)
|+.|.+.+...
T Consensus 90 g~~l~v~~a~~ 100 (111)
T 1x4h_A 90 GRQLKVDLAVT 100 (111)
T ss_dssp SCEEEEECCCC
T ss_pred CEEEEEEECCC
Confidence 99999888765
No 128
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=133.52 Aligned_cols=86 Identities=20% Similarity=0.365 Sum_probs=79.4
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeC-C-CCCceeEEEEEeecHHHHHHHHHHh-hhCccCCeEE
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-Q-DGKSKGYGFVQYSTQESALNAIEKL-YAATVEGMEL 124 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d-~-~g~skg~aFV~F~~~e~A~~Ai~~l-ng~~i~g~~i 124 (354)
......++|||+|||+++|+++|+++|+.||.|.+|+|+.+ . ++.++|||||+|.+.++|++|++.| |+..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 44567899999999999999999999999999999999999 5 8999999999999999999999999 8999999999
Q ss_pred Eeccccccc
Q 036905 125 YAPSLRAGR 133 (354)
Q Consensus 125 ~~~~~~~~~ 133 (354)
.+.+.....
T Consensus 90 ~v~~a~~~~ 98 (107)
T 2cph_A 90 VLEWADSEV 98 (107)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 988877643
No 129
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=2.2e-18 Score=128.07 Aligned_cols=80 Identities=18% Similarity=0.351 Sum_probs=73.4
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||+++|+++|+++|++||.|.+|+++.++ +|+++|||||+|.+.++|++|++ +++..+.|+.|.+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 345677899999999999999999999999999999999998 89999999999999999999996 5888899999987
Q ss_pred cc
Q 036905 127 PS 128 (354)
Q Consensus 127 ~~ 128 (354)
.+
T Consensus 85 ~~ 86 (87)
T 3s7r_A 85 KK 86 (87)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 130
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=143.19 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcC--CeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFG--DIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
...++|||+|||+++|+++|+++|+.|| .|.+|+|+.|+ +|+++|||||+|.+.++|++||+.|||..|.|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999998 99999999999999999999999999999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 7654
No 131
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=131.10 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=74.7
Q ss_pred ceEEEeCCCCccCHHHHH----HHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 159 KNLYVKNINDDVDEIELK----QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~----~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
++|||+|||.++++++|+ ++|++||.|.+|+|+.+..+ +|||||+|.+.++|.+|++.|||..|.|++|+|.+|
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 789999999999999999 99999999999999998865 899999999999999999999999999999999999
Q ss_pred cCchh
Q 036905 235 QTKRE 239 (354)
Q Consensus 235 ~~~~~ 239 (354)
+++..
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87643
No 132
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=2.8e-18 Score=131.77 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=76.4
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++++++|+++|+.|| |.+|+|+.+. +|.++|||||+|.+.++|.+|+ .|||..|.|++|+|.++++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 48999999999999999999999997 9999999998 7999999999999999999999 8999999999999999987
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+..+
T Consensus 93 ~~~~ 96 (103)
T 2dng_A 93 RKQD 96 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 133
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=133.01 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=81.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR 133 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~ 133 (354)
++|||+|||+++|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..+.|+.|.+.+.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 48999999999999999999999999999999877 78999999999999999999999999999999988876633
Q ss_pred cccccccccccccCCCchhhhhcCCceEEEeCCC
Q 036905 134 IQESASFNNLYVKNLDDDVTEEILDKNLYVKNIN 167 (354)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 167 (354)
...... ..........+|||+||+
T Consensus 77 ~~~~~~----------~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 77 RRSRFD----------RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSCCC----------SCCCSCCCCSCCCSCCCC
T ss_pred CcccCC----------CCCccccCCCceecCCCC
Confidence 111100 000111334789999986
No 134
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=9.9e-19 Score=139.89 Aligned_cols=84 Identities=31% Similarity=0.401 Sum_probs=78.9
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
...++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345899999999999999999999999999999999987 7899999999999999999999999999999999999999
Q ss_pred cCchh
Q 036905 235 QTKRE 239 (354)
Q Consensus 235 ~~~~~ 239 (354)
+++..
T Consensus 124 ~~~~p 128 (129)
T 2kxn_B 124 ITKRP 128 (129)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 88753
No 135
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=3.9e-18 Score=146.06 Aligned_cols=126 Identities=14% Similarity=0.230 Sum_probs=101.7
Q ss_pred eeeecc-CCCCccceeEEEecCchhhHHHHHHhcccccccc--cc----------ccCCCCCCeEEEcCCCCCCcHHHHH
Q 036905 5 LRALNN-NDSAILGTPFSLYVGDLDSTDLLRLCSALIASID--VH----------SAMATPTFIPFTVNLASTIDNWKLH 71 (354)
Q Consensus 5 ~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~lfV~nLp~~~te~~L~ 71 (354)
++.+.+ +.+.+.|++|+.|....+++.++..+...+.... +. .......++|||+|||+++|+++|+
T Consensus 43 v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~ 122 (196)
T 1l3k_A 43 CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLR 122 (196)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHH
T ss_pred EEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHH
Confidence 444443 4567899999999999999999887554443111 11 1122345899999999999999999
Q ss_pred HHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 72 QIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 72 ~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|+.. +|..++|+.|.+.+...
T Consensus 123 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALS 182 (196)
T ss_dssp HHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-
T ss_pred HHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCC
Confidence 999999999999999998 899999999999999999999985 89999999999877665
No 136
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=130.73 Aligned_cols=85 Identities=28% Similarity=0.427 Sum_probs=77.7
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|++|++.|||..|.|+.|.+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999998754 8999999999999999999999999999999998
Q ss_pred cccccc
Q 036905 127 PSLRAG 132 (354)
Q Consensus 127 ~~~~~~ 132 (354)
.+....
T Consensus 88 ~~a~~~ 93 (103)
T 2cq3_A 88 NNATAR 93 (103)
T ss_dssp EECCSS
T ss_pred EEcccC
Confidence 887653
No 137
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=131.83 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhh--CccCCeEEEec
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA--ATVEGMELYAP 127 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng--~~i~g~~i~~~ 127 (354)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|++.++|++|++.|++ ..+.|+.|.+.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456789999999999999999999999999999999865 79999999999999999998874 68999999998
Q ss_pred cccccc
Q 036905 128 SLRAGR 133 (354)
Q Consensus 128 ~~~~~~ 133 (354)
+.+...
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 877643
No 138
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=130.58 Aligned_cols=82 Identities=30% Similarity=0.437 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCC--C--CceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQD--G--KSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~--g--~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
.+.++|||+|||+++|+++|+++|+.||.|.+|++..+.. | .++|||||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998763 4 89999999999999999999999999999999998
Q ss_pred cccccc
Q 036905 127 PSLRAG 132 (354)
Q Consensus 127 ~~~~~~ 132 (354)
.+....
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 887663
No 139
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.2e-18 Score=127.15 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
.+..|||+||++.+||++|+++|.+||+|.+|++.. +||||||+|.+.++|++|++.||+..+.|+.|.+.+..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 367899999999999999999999999999999974 69999999999999999999999999999999988764
No 140
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-18 Score=130.39 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=76.4
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
......++|||+|||+++|+++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 44567899999999999999999999999999999999998633 68999999999999999999999999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 89 ~a~~ 92 (103)
T 2cqi_A 89 WATT 92 (103)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 8765
No 141
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=135.73 Aligned_cols=82 Identities=23% Similarity=0.444 Sum_probs=77.6
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4899999999999999999999999999999999988 6899999999999999999999 9999999999999999987
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+..+
T Consensus 104 ~~~~ 107 (114)
T 2cq4_A 104 EKNR 107 (114)
T ss_dssp HHHH
T ss_pred CccC
Confidence 6654
No 142
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=2.2e-18 Score=129.40 Aligned_cols=81 Identities=30% Similarity=0.469 Sum_probs=76.6
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.++|||+|||.++++++|+++|++||.|.+|+++++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.+++++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 489999999999999999999999999999999985 7889999999999999999999999999999999999999876
Q ss_pred hh
Q 036905 238 RE 239 (354)
Q Consensus 238 ~~ 239 (354)
..
T Consensus 87 ~~ 88 (92)
T 2dgv_A 87 SG 88 (92)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 143
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=9.4e-19 Score=137.86 Aligned_cols=82 Identities=24% Similarity=0.322 Sum_probs=76.7
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||+++|+++|+++|++||.|.+|+++.++ +|+++|||||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445567899999999999999999999999999999999997 8999999999999999999999999999999999988
Q ss_pred ccc
Q 036905 127 PSL 129 (354)
Q Consensus 127 ~~~ 129 (354)
.+.
T Consensus 115 ~~a 117 (118)
T 2khc_A 115 QLK 117 (118)
T ss_dssp EEC
T ss_pred Eec
Confidence 764
No 144
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=1.3e-18 Score=134.34 Aligned_cols=84 Identities=23% Similarity=0.429 Sum_probs=78.5
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCcee---CCeeEEEE
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILF---HQKPLYVA 232 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i---~g~~l~v~ 232 (354)
..++|||+|||.++|+++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..+ .|++|+|.
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 91 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK 91 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEE
Confidence 34899999999999999999999999999999999987 799999999999999999999999999988 89999999
Q ss_pred eccCchhh
Q 036905 233 IAQTKRER 240 (354)
Q Consensus 233 ~a~~~~~~ 240 (354)
+++.+..+
T Consensus 92 ~a~~~~~~ 99 (106)
T 2dgp_A 92 PADSESRG 99 (106)
T ss_dssp ECCCCSCC
T ss_pred ECCccccc
Confidence 99887543
No 145
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=6.1e-18 Score=125.63 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=73.0
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
...++|||+|||.++++++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|++ +++..|+|++|+|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 344899999999999999999999999999999999997 79999999999999999999996 5888999999999986
No 146
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.8e-18 Score=136.18 Aligned_cols=80 Identities=31% Similarity=0.512 Sum_probs=75.4
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
...++|||+|||.++++++|+++|++||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|||..|+|++|+|.|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 345899999999999999999999999999999999986 7899999999999999999999999999999999999998
Q ss_pred c
Q 036905 235 Q 235 (354)
Q Consensus 235 ~ 235 (354)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 5
No 147
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=135.21 Aligned_cols=85 Identities=28% Similarity=0.504 Sum_probs=79.2
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCee--------EEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIIS--------SVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~--------~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g 226 (354)
...++|||+|||.++|+++|+++|+.||.|. .|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3458999999999999999999999999999 69999985 89999999999999999999999999999999
Q ss_pred eeEEEEeccCchhh
Q 036905 227 KPLYVAIAQTKRER 240 (354)
Q Consensus 227 ~~l~v~~a~~~~~~ 240 (354)
++|+|.+++++..+
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999887654
No 148
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=131.15 Aligned_cols=82 Identities=24% Similarity=0.424 Sum_probs=77.6
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCee-EEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCee----EE
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIIS-SVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKP----LY 230 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~-~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~----l~ 230 (354)
..++|||+|||.++++++|+++|++||.|. +|+++.++ +|.++|||||+|.+.++|.+|++.|||..|.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 348999999999999999999999999999 99999997 8999999999999999999999999999999999 99
Q ss_pred EEeccCch
Q 036905 231 VAIAQTKR 238 (354)
Q Consensus 231 v~~a~~~~ 238 (354)
|.||+...
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99998653
No 149
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=127.55 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=75.9
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.++|||+|||.++++++|+++|+.| .|.+|+++.+.+|.++|||||+|.+.++|.+|+. |||..|+|+.|+|.+++++
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 4899999999999999999999999 9999999999999999999999999999999999 9999999999999999876
Q ss_pred h
Q 036905 238 R 238 (354)
Q Consensus 238 ~ 238 (354)
.
T Consensus 88 ~ 88 (91)
T 2dgw_A 88 P 88 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=132.22 Aligned_cols=83 Identities=17% Similarity=0.312 Sum_probs=77.7
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++ ++.++|||||+|.+.++|++||+. |+..|.|+.|.+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 445678999999999999999999999999999999999997 899999999999999999999998 999999999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 90 ~~a~~ 94 (105)
T 2dh8_A 90 KPCTP 94 (105)
T ss_dssp CCSCC
T ss_pred EEccC
Confidence 88765
No 151
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=138.67 Aligned_cols=85 Identities=27% Similarity=0.432 Sum_probs=79.3
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
......++|||+|||.++|+++|+++|+.||.|.+|+|+.++ +|+++|||||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345667899999999999999999999999999999999998 8999999999999999999999999999999999998
Q ss_pred cccccc
Q 036905 127 PSLRAG 132 (354)
Q Consensus 127 ~~~~~~ 132 (354)
.+....
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 887763
No 152
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=2.1e-18 Score=134.08 Aligned_cols=84 Identities=24% Similarity=0.406 Sum_probs=78.1
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||+++|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|++|+..|||..+.|+.|.+
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 344567899999999999999999999999999999999997 8999999999999999999999999999999999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 101 ~~a~~ 105 (110)
T 1oo0_B 101 DWCFV 105 (110)
T ss_dssp EESEE
T ss_pred EEccc
Confidence 87654
No 153
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=2.5e-18 Score=128.28 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
.++|||+|||+++|+++|+++|+.||.|.+|++..+. +|+++|||||+|.+.++|++|+ .|||..+.|+.|.+.+.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4799999999999999999999999999999999998 9999999999999999999999 8999999999999887654
No 154
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=128.93 Aligned_cols=80 Identities=23% Similarity=0.412 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCC-ceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGK-SKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~-skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
..++|||+|||.++|+++|+++|+.||.|.+|++..+. ++. ++|||||+|.+.++|++|++.|||..+.|+.|.+.+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46799999999999999999999999999999999988 444 8999999999999999999999999999999998776
Q ss_pred cc
Q 036905 130 RA 131 (354)
Q Consensus 130 ~~ 131 (354)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 155
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=133.74 Aligned_cols=81 Identities=37% Similarity=0.514 Sum_probs=75.9
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
...++|||+|||.++|+++|+++|+.||.|.+|+++.+.. .++|||||+|.+.++|.+|++.|||..|+|++|+|.+++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3448999999999999999999999999999999999864 489999999999999999999999999999999999998
Q ss_pred Cc
Q 036905 236 TK 237 (354)
Q Consensus 236 ~~ 237 (354)
++
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 156
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=4.5e-18 Score=130.61 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
...+.++|||+|||+++|+++|+++|+.|| |.+|+|+.+. +|+++|||||+|.+.++|++|+ .|||..+.|+.|.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999997 9999999998 8999999999999999999999 899999999999988
Q ss_pred ccccc
Q 036905 128 SLRAG 132 (354)
Q Consensus 128 ~~~~~ 132 (354)
+....
T Consensus 89 ~a~~~ 93 (103)
T 2dng_A 89 IAEGR 93 (103)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 87653
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=3.8e-18 Score=146.37 Aligned_cols=120 Identities=15% Similarity=0.245 Sum_probs=102.0
Q ss_pred CCCccceeEEEecCchhhHHHHHHhcccccccc--ccc------------------------cCCCCCCeEEEcCCCCCC
Q 036905 12 DSAILGTPFSLYVGDLDSTDLLRLCSALIASID--VHS------------------------AMATPTFIPFTVNLASTI 65 (354)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------------~~~~~~~~lfV~nLp~~~ 65 (354)
.+.+.|++|+.|.+..+++.++.++...+.... +.. ......++|||+|||.++
T Consensus 47 ~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 126 (198)
T 2yh0_A 47 INQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYL 126 (198)
T ss_dssp EETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTC
T ss_pred ecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCC
Confidence 356689999999999999998866655443111 110 112467999999999999
Q ss_pred cHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 66 DNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 66 te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
|+++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|++|++.|||..++|+.|.+.+...
T Consensus 127 ~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 127 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp CHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 999999999999999999999998 999999999999999999999999999999999999887654
No 158
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=131.94 Aligned_cols=82 Identities=27% Similarity=0.427 Sum_probs=76.8
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-C-CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-R-GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~-g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
..++|||+|||.++++++|+++|+.|| |.+|.|+.+. + |.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 348999999999999999999999999 9999999988 4 899999999999999999999 99999999999999999
Q ss_pred cCchhh
Q 036905 235 QTKRER 240 (354)
Q Consensus 235 ~~~~~~ 240 (354)
+++..+
T Consensus 92 ~~~~~~ 97 (104)
T 1wi8_A 92 DQAQDK 97 (104)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887654
No 159
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=127.93 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCc--cCCeEEEe
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT--VEGMELYA 126 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~--i~g~~i~~ 126 (354)
...++++|||+|||.++|+++|+++|++||.|.+|++++ +||||||+|++.++|.+|++.|++.. +.|+.|++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 345788999999999999999999999999999999984 47999999999999999999999986 78999999
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+++.
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 88765
No 160
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=135.29 Aligned_cols=85 Identities=16% Similarity=0.272 Sum_probs=79.3
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCe-eEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGII-SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v-~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||+++|+++|+++|+.||.| .+|+|+.+.+|.++|||||+|.+.++|.+|+.. |+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEEC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECC
Confidence 34899999999999999999999999999 899999999999999999999999999999987 9999999999999998
Q ss_pred CchhhhH
Q 036905 236 TKRERTS 242 (354)
Q Consensus 236 ~~~~~~~ 242 (354)
+++.+..
T Consensus 93 ~~~~~~~ 99 (114)
T 2cpy_A 93 LEDMREI 99 (114)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776554
No 161
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=131.14 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=75.2
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.++..
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 4789999999999999999999999999988777765 889999999999999999999999999999999999999976
Q ss_pred c
Q 036905 237 K 237 (354)
Q Consensus 237 ~ 237 (354)
+
T Consensus 95 ~ 95 (98)
T 2cqp_A 95 P 95 (98)
T ss_dssp S
T ss_pred C
Confidence 5
No 162
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.4e-18 Score=125.43 Aligned_cols=74 Identities=22% Similarity=0.396 Sum_probs=71.2
Q ss_pred eEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
+|||+|||.++++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|.+|++ |||..|+|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999987 89999999999999999999998 9999999999999986
No 163
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-18 Score=132.24 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=70.9
Q ss_pred CCceEEEeCCCC-ccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc--eeCCeeEEEEe
Q 036905 157 LDKNLYVKNIND-DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI--LFHQKPLYVAI 233 (354)
Q Consensus 157 ~~~~l~v~nl~~-~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~--~i~g~~l~v~~ 233 (354)
..++|||+|||+ ++|+++|+++|++||.|.+|.|+++ +|||||+|++.++|.+|++.||+. .|.|++|+|.|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 458999999999 9999999999999999999999876 689999999999999999999864 59999999999
Q ss_pred ccCch
Q 036905 234 AQTKR 238 (354)
Q Consensus 234 a~~~~ 238 (354)
|+.+.
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98654
No 164
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=2.9e-19 Score=171.42 Aligned_cols=165 Identities=15% Similarity=0.210 Sum_probs=109.7
Q ss_pred HHHHHhhcCCeeEEEEEeC----C--CCCceeEE--EEEeecHHHHHHHHHHhhhCccCCeEEEeccccccc--cccccc
Q 036905 70 LHQIFSKFGDIQSSKVVVS----Q--DGKSKGYG--FVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGR--IQESAS 139 (354)
Q Consensus 70 L~~~F~~~G~i~~v~v~~d----~--~g~skg~a--FV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~--~~~~~~ 139 (354)
|.++|.++|.|..|..+.. . +....|++ |+.|.+..++..++..++......+........... ......
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999988743332 1 12223344 888877666555543332222111100000000000 000000
Q ss_pred cccccccCCCchhhhhcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHH
Q 036905 140 FNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINT 218 (354)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~ 218 (354)
+. . ...........++|||+||+..+|+++|.++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+||..
T Consensus 89 ~~----p-~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 89 WD----P-HNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred cC----C-cccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 00 0 00001112334799999999999999999999999999999999986 899999999999999999999999
Q ss_pred hCCceeCCeeEEEEeccCchh
Q 036905 219 LNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 219 l~g~~i~g~~l~v~~a~~~~~ 239 (354)
|||..|.|+.|.|.|+..+..
T Consensus 164 lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 164 ADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred cCCCEECCEEEEEEEeCCCCC
Confidence 999999999999999987643
No 165
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=133.55 Aligned_cols=85 Identities=19% Similarity=0.258 Sum_probs=79.0
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCee--------EEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCc
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQ--------SSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAAT 118 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~ 118 (354)
....+.++|||+|||+++|+++|+++|+.||.|. .|+|..++ +|+++|||||+|.+.++|++|++.|||..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4556789999999999999999999999999999 69999996 89999999999999999999999999999
Q ss_pred cCCeEEEecccccc
Q 036905 119 VEGMELYAPSLRAG 132 (354)
Q Consensus 119 i~g~~i~~~~~~~~ 132 (354)
+.|+.|.+.+....
T Consensus 90 ~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 90 FQGSKLKVSLARKK 103 (113)
T ss_dssp ETTEECEEECSSCC
T ss_pred cCCCEEEEEECCCC
Confidence 99999998887663
No 166
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=3.6e-18 Score=132.59 Aligned_cols=85 Identities=20% Similarity=0.378 Sum_probs=76.2
Q ss_pred hcCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 036905 155 EILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233 (354)
Q Consensus 155 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 233 (354)
....++|||+|||.++|+++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|+..+ +..|+|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 3445899999999999999999999999999999999997 7999999999999999999999976 5999999999999
Q ss_pred ccCchhh
Q 036905 234 AQTKRER 240 (354)
Q Consensus 234 a~~~~~~ 240 (354)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9877543
No 167
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=7.9e-18 Score=133.76 Aligned_cols=83 Identities=18% Similarity=0.358 Sum_probs=78.5
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
...++|||+|||..+++++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.+|.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 34489999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred Cch
Q 036905 236 TKR 238 (354)
Q Consensus 236 ~~~ 238 (354)
.+.
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 653
No 168
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=131.65 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
.....++|||+|||+++|+++|+++|+.||.|.+++++.+. +|+++|||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556899999999999999999999999999988888887 89999999999999999999999999999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 7653
No 169
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.7e-18 Score=128.81 Aligned_cols=80 Identities=15% Similarity=0.290 Sum_probs=72.6
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh--CCceeCCeeEEEEe
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL--NGILFHQKPLYVAI 233 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l--~g~~i~g~~l~v~~ 233 (354)
...++|||+|||+.+++++|+++|++||.|.+|.++++ ||||||+|++.++|.+|++.| ++..|.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 34589999999999999999999999999999999875 799999999999999999987 56789999999999
Q ss_pred ccCchhh
Q 036905 234 AQTKRER 240 (354)
Q Consensus 234 a~~~~~~ 240 (354)
++.+...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9877544
No 170
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=3.5e-18 Score=134.61 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=76.8
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCC---eeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGI---ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~---v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
.++|||+|||+++|+++|+++|+.||. |.+|+|+.+..|+++|||||+|.+.++|.+|++ |||..|+|+.|+|.++
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKS 95 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEEC
Confidence 488999999999999999999999999 899999999889999999999999999999999 9999999999999999
Q ss_pred cCchh
Q 036905 235 QTKRE 239 (354)
Q Consensus 235 ~~~~~ 239 (354)
..++.
T Consensus 96 ~~~~~ 100 (118)
T 2db1_A 96 HRTEM 100 (118)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76653
No 171
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-18 Score=130.36 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=71.8
Q ss_pred cCCCCCCeEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCc--cCCeEE
Q 036905 48 AMATPTFIPFTVNLAS-TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT--VEGMEL 124 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~--i~g~~i 124 (354)
....++++|||+|||+ ++|+++|+++|++||.|.+|+|+++ +|||||+|++.++|++|++.||+.. +.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 3455789999999999 9999999999999999999999865 6899999999999999999999864 999999
Q ss_pred Eeccccc
Q 036905 125 YAPSLRA 131 (354)
Q Consensus 125 ~~~~~~~ 131 (354)
.|.+...
T Consensus 85 ~V~~a~~ 91 (102)
T 1x4d_A 85 RVHLSQK 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9988775
No 172
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=132.46 Aligned_cols=84 Identities=21% Similarity=0.358 Sum_probs=78.5
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|+.. |+..|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 344899999999999999999999999999999999996 899999999999999999999998 999999999999999
Q ss_pred cCchhh
Q 036905 235 QTKRER 240 (354)
Q Consensus 235 ~~~~~~ 240 (354)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 887643
No 173
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=5.8e-18 Score=139.13 Aligned_cols=122 Identities=16% Similarity=0.241 Sum_probs=99.7
Q ss_pred eeeccCCCCccceeEEEecCchhhHHHHHHh--cccc----c----c-------------ccccccCCCCCCeEEEcCCC
Q 036905 6 RALNNNDSAILGTPFSLYVGDLDSTDLLRLC--SALI----A----S-------------IDVHSAMATPTFIPFTVNLA 62 (354)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~----~----~-------------~~~~~~~~~~~~~lfV~nLp 62 (354)
.++..|+....|++++.+....+++++++.. ...+ . . ...........++|||+|||
T Consensus 3 ~al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 82 (150)
T 2i2y_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLG 82 (150)
T ss_dssp EEEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCC
T ss_pred eEeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 3566788889999999999999998776443 1111 0 0 01223344567999999999
Q ss_pred CCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 63 STIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 63 ~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
+++|+++|+++|+.||.|.+|++..+ ++|||||+|.+.++|++|++.|||..+.|+.|.+.+...
T Consensus 83 ~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 83 NNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp SCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 99999999999999999999999876 589999999999999999999999999999999887654
No 174
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.2e-18 Score=125.65 Aligned_cols=73 Identities=14% Similarity=0.342 Sum_probs=69.8
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 55 IPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 55 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
+|||+|||+++|+++|+++|++||.|.+|++..++ +|+++|||||+|.+.++|++|++ +||..++|+.|.+.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 59999999999999999999999999999999998 89999999999999999999998 999999999998765
No 175
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=131.97 Aligned_cols=81 Identities=31% Similarity=0.473 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
..++|||+|||+++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|++|++.|||..+.|+.|.+.+..
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999997 89999999999999999999999999999999999988876
Q ss_pred cc
Q 036905 131 AG 132 (354)
Q Consensus 131 ~~ 132 (354)
..
T Consensus 87 ~~ 88 (104)
T 1p1t_A 87 SE 88 (104)
T ss_dssp CT
T ss_pred Cc
Confidence 63
No 176
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=126.46 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
.....++|||+|||+++|+++|+++|+.| .|.+|+|+++.+|+++|||||+|.+.++|++|++ |||..+.|+.|.+.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 44567899999999999999999999999 9999999999999999999999999999999999 999999999999877
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 84 a~~ 86 (91)
T 2dgw_A 84 EKS 86 (91)
T ss_dssp ESS
T ss_pred CCc
Confidence 654
No 177
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.7e-18 Score=130.89 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSL 129 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~ 129 (354)
...++|||+|||+++|+++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|++|++.|||..+.|+.|.+.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 446899999999999999999999999999999999887 8999999999999999999999999999999999997764
Q ss_pred c
Q 036905 130 R 130 (354)
Q Consensus 130 ~ 130 (354)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 178
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=2.8e-18 Score=136.70 Aligned_cols=83 Identities=22% Similarity=0.381 Sum_probs=78.6
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||..+|+++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+..
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 4799999999999999999999999999999999987 899999999999999999999999999999999999999987
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+...
T Consensus 102 ~~~~ 105 (126)
T 3ex7_B 102 RGPP 105 (126)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 6544
No 179
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=135.73 Aligned_cols=84 Identities=19% Similarity=0.357 Sum_probs=75.8
Q ss_pred CCceEEEeCCCCccCHHHHH----HHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 036905 157 LDKNLYVKNINDDVDEIELK----QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~----~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 232 (354)
..++|||+||++.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 34899999999999999876 6999999999988864 57789999999999999999999999999999999999
Q ss_pred eccCchhhhH
Q 036905 233 IAQTKRERTS 242 (354)
Q Consensus 233 ~a~~~~~~~~ 242 (354)
||+.+.....
T Consensus 106 ~a~~~~~~~~ 115 (127)
T 2a3j_A 106 FSETPQSQVA 115 (127)
T ss_dssp ECCCCCHHHH
T ss_pred EccCcchhcc
Confidence 9998876543
No 180
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.7e-18 Score=133.45 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=76.3
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
...++|||+|||.++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+ .|.|++|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 344899999999999999999999999999999999987 799999999999999999999999998 899999999999
Q ss_pred cCc
Q 036905 235 QTK 237 (354)
Q Consensus 235 ~~~ 237 (354)
..+
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 765
No 181
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=3e-18 Score=137.91 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=76.9
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCC---eeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGI---ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~---v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
.++|||+|||+++|+++|+++|+.||. |.+|+|+.+..|+++|||||+|++.++|.+|++ |||..|+|+.|+|.++
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 479999999999999999999999999 899999999889999999999999999999999 9999999999999999
Q ss_pred cCchh
Q 036905 235 QTKRE 239 (354)
Q Consensus 235 ~~~~~ 239 (354)
.+++.
T Consensus 123 ~~~e~ 127 (136)
T 2hgl_A 123 HRTEM 127 (136)
T ss_dssp CHHHH
T ss_pred ChHHH
Confidence 76654
No 182
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=3e-18 Score=129.51 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=73.9
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++|+++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 3799999999999999999999999999988888776 889999999999999999999999999999999999999863
No 183
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1.1e-17 Score=138.31 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=79.1
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||.++|+++|+++|+.||.|.+|.|+.+. ++.++|||||+|.+.++|.+|++.|||..|.|++|+|.|++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34899999999999999999999999999999999998 78999999999999999999999999999999999999998
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
.+..+
T Consensus 118 ~~~~~ 122 (156)
T 1h2v_Z 118 GFKEG 122 (156)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 76543
No 184
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.9e-18 Score=131.69 Aligned_cols=81 Identities=27% Similarity=0.514 Sum_probs=76.7
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee--------CCee
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF--------HQKP 228 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i--------~g~~ 228 (354)
..++|||+|||.++|+++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..| .+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~ 103 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 103 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999 5888
Q ss_pred EEEEeccCc
Q 036905 229 LYVAIAQTK 237 (354)
Q Consensus 229 l~v~~a~~~ 237 (354)
|+|.|++++
T Consensus 104 l~v~~a~p~ 112 (114)
T 1x5o_A 104 LLCKFSGPS 112 (114)
T ss_dssp BEEEECCCS
T ss_pred eeEEccCCC
Confidence 999999865
No 185
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=132.79 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=74.8
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC--CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN--RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~--~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 233 (354)
...++|||+|||.++++++|+++|+.|| |.+|+|+.+. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3348999999999999999999999999 9999999986 7999999999999999999999 8999999999999999
Q ss_pred ccCch
Q 036905 234 AQTKR 238 (354)
Q Consensus 234 a~~~~ 238 (354)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98764
No 186
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=8.7e-18 Score=133.51 Aligned_cols=84 Identities=17% Similarity=0.310 Sum_probs=78.8
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
....+.++|||+|||.++++++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 110 ~a~~ 113 (124)
T 2kt5_A 110 LVAS 113 (124)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8665
No 187
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=139.05 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=77.7
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeE--EEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhC----cc
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQS--SKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAA----TV 119 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~----~i 119 (354)
.......++|||+|||+++|+++|+++|++||.|.+ |+|++|+ +|+++|||||+|.+. +|.+|+..|||. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344567789999999999999999999999999977 9999999 999999999999999 999999999999 99
Q ss_pred CCeEEEeccccc
Q 036905 120 EGMELYAPSLRA 131 (354)
Q Consensus 120 ~g~~i~~~~~~~ 131 (354)
.|+.|.+.+...
T Consensus 96 ~gr~l~V~~a~~ 107 (131)
T 2m2b_A 96 DGKTINVEFAKG 107 (131)
T ss_dssp GGCCCCCEECCC
T ss_pred CCEEEEEEECCC
Confidence 999999887765
No 188
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=130.52 Aligned_cols=82 Identities=16% Similarity=0.365 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-C-CCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-D-GKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~-g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
...+.++|||+|||+++|+++|+++|+.|| |.+|+|+.+. + |+++|||||+|.+.++|++|| .||+..+.|+.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 9999999998 5 999999999999999999999 89999999999998
Q ss_pred cccccc
Q 036905 127 PSLRAG 132 (354)
Q Consensus 127 ~~~~~~ 132 (354)
.+....
T Consensus 89 ~~a~~~ 94 (104)
T 1wi8_A 89 DVADQA 94 (104)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 887653
No 189
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=133.24 Aligned_cols=83 Identities=25% Similarity=0.364 Sum_probs=77.3
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
......++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +++++|||||+|.+.++|++||+.+++ .+.|+.|.+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 445667999999999999999999999999999999999998 899999999999999999999999998 899999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 91 ~~a~~ 95 (116)
T 2cqd_A 91 NLAYL 95 (116)
T ss_dssp EESTT
T ss_pred EEccc
Confidence 88765
No 190
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=131.77 Aligned_cols=81 Identities=20% Similarity=0.308 Sum_probs=75.0
Q ss_pred CCceEEEeCCCCcc------CHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-eE
Q 036905 157 LDKNLYVKNINDDV------DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK-PL 229 (354)
Q Consensus 157 ~~~~l~v~nl~~~~------t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~-~l 229 (354)
..++|||+|||..+ |+++|+++|++||.|.+|.|+ ..+|.++|||||+|.+.++|.+|+..|||..|.|+ +|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 34899999999999 789999999999999999998 45889999999999999999999999999999998 99
Q ss_pred EEEeccCch
Q 036905 230 YVAIAQTKR 238 (354)
Q Consensus 230 ~v~~a~~~~ 238 (354)
+|.++...+
T Consensus 93 ~V~~a~~~~ 101 (105)
T 2nlw_A 93 RVNLFTDFD 101 (105)
T ss_dssp EEECSCCCC
T ss_pred EEEEcchHh
Confidence 999997653
No 191
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=133.48 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=72.8
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--ceeCCeeEEEEec
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG--ILFHQKPLYVAIA 234 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g--~~i~g~~l~v~~a 234 (354)
..++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|++.++|.+|++.|++ ..|.|++|+|.|+
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 3489999999999999999999999999999999986 79999999999999999999974 6899999999999
Q ss_pred cCchhh
Q 036905 235 QTKRER 240 (354)
Q Consensus 235 ~~~~~~ 240 (354)
+.++.+
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 887654
No 192
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=132.24 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=75.4
Q ss_pred CceEEEeCCCCccCHHHHH---HHhhcCCCeeEEEEeeCC-C---CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 036905 158 DKNLYVKNINDDVDEIELK---QYFSQCGIISSVKIMRTN-R---GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~---~~F~~~G~v~~v~i~~~~-~---g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 230 (354)
.++|||+|||.++++++|+ ++|++||.|.+|.|+.+. + +.++|||||+|.+.++|.+|++.|||..|.|++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 3799999999999999999 999999999999999886 3 35679999999999999999999999999999999
Q ss_pred EEeccCch
Q 036905 231 VAIAQTKR 238 (354)
Q Consensus 231 v~~a~~~~ 238 (354)
|.||+++.
T Consensus 95 V~~a~~k~ 102 (111)
T 2cpi_A 95 ASLGTTKY 102 (111)
T ss_dssp EESCCCCS
T ss_pred EEeccccc
Confidence 99999875
No 193
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=1.1e-18 Score=130.65 Aligned_cols=80 Identities=30% Similarity=0.475 Sum_probs=72.8
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
++|||+|||.++++++|+++|+.||.|.+|.++.+. +|.++|||||+|.+.+ |.+|+..|||..++|++|+|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999987 7899999999999999 99999999999999999999999876
Q ss_pred hh
Q 036905 238 RE 239 (354)
Q Consensus 238 ~~ 239 (354)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 194
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=127.74 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH----HHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 50 ATPTFIPFTVNLASTIDNWKLH----QIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
....++|||+|||+++++++|+ ++|++||.|.+|+|..|..+ +|||||+|.+.++|++|++.|||..+.|+.|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456799999999999999999 99999999999999998844 88999999999999999999999999999999
Q ss_pred eccccc
Q 036905 126 APSLRA 131 (354)
Q Consensus 126 ~~~~~~ 131 (354)
+.+.+.
T Consensus 84 V~~a~~ 89 (96)
T 2dgx_A 84 VSLATG 89 (96)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 888754
No 195
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.2e-18 Score=132.75 Aligned_cols=82 Identities=24% Similarity=0.415 Sum_probs=77.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++|+++|+++|+.||.|..|.|+.+. +|.++|||||+|.+.++|.+|+.. |+..|.|+.|+|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 3899999999999999999999999999999999997 799999999999999999999997 99999999999999998
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+..+
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7653
No 196
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=126.84 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=76.0
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|++|++ ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3445667899999999999999999999999999999999998 89999999999999999999998 47789999999
Q ss_pred eccccc
Q 036905 126 APSLRA 131 (354)
Q Consensus 126 ~~~~~~ 131 (354)
+.+...
T Consensus 87 v~~a~~ 92 (103)
T 2cqg_A 87 CKLPNS 92 (103)
T ss_dssp EECCCT
T ss_pred EEecCC
Confidence 888765
No 197
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=132.36 Aligned_cols=86 Identities=26% Similarity=0.400 Sum_probs=77.3
Q ss_pred ccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEE
Q 036905 45 VHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124 (354)
Q Consensus 45 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i 124 (354)
.........++|||+|||.++|+++|+++|++||.|.+|++..+.. .++|||||+|.+.++|++|++.|||..++|+.|
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3345566789999999999999999999999999999999998863 489999999999999999999999999999999
Q ss_pred Eeccccc
Q 036905 125 YAPSLRA 131 (354)
Q Consensus 125 ~~~~~~~ 131 (354)
.+.+...
T Consensus 100 ~V~~a~~ 106 (109)
T 2err_A 100 EVNNATA 106 (109)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9887653
No 198
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.7e-18 Score=130.05 Aligned_cols=78 Identities=21% Similarity=0.355 Sum_probs=73.9
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
.+|||+|||+++|+++|+++|+.| .|.+|.|+.+.+|+++|||||+|.+.++|.+|+ .||+..|+||.|.|..+..++
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~ 94 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQ 94 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccc
Confidence 789999999999999999999999 899999999999999999999999999999999 699999999999999887543
No 199
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=4.3e-18 Score=132.14 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=72.5
Q ss_pred cccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEE
Q 036905 46 HSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124 (354)
Q Consensus 46 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i 124 (354)
......+.++|||+|||+++|+++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|++|++.+ +..++|+.|
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 34556678899999999999999999999999999999999998 8999999999999999999999975 588999999
Q ss_pred Eeccccc
Q 036905 125 YAPSLRA 131 (354)
Q Consensus 125 ~~~~~~~ 131 (354)
.+.+...
T Consensus 97 ~V~~a~~ 103 (109)
T 2rs2_A 97 DPKVAFP 103 (109)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9877654
No 200
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=1e-17 Score=133.14 Aligned_cols=81 Identities=22% Similarity=0.500 Sum_probs=76.4
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||.++|+++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34899999999999999999999999999999999986 8999999999999999999999 799999999999999998
Q ss_pred Cch
Q 036905 236 TKR 238 (354)
Q Consensus 236 ~~~ 238 (354)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 201
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=4.6e-18 Score=136.82 Aligned_cols=83 Identities=10% Similarity=0.103 Sum_probs=76.3
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCC---eeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEE
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGD---IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i 124 (354)
......++|||+|||+++|+++|+++|+.||. |.+|+|++|+.|+++|||||+|.+.++|++||+ +|+..++|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34456789999999999999999999999999 899999999999999999999999999999999 99999999999
Q ss_pred Eeccccc
Q 036905 125 YAPSLRA 131 (354)
Q Consensus 125 ~~~~~~~ 131 (354)
.+.+...
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9776543
No 202
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.7e-18 Score=129.77 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=73.9
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.++|||+|||+++|+++|+++|+.||. .+|+|+.+++|+++|||||+|.+.++|.+||+ +|+..|.|+.|+|.++...
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCC
Confidence 479999999999999999999999995 49999999999999999999999999999995 7999999999999998766
Q ss_pred h
Q 036905 238 R 238 (354)
Q Consensus 238 ~ 238 (354)
+
T Consensus 93 ~ 93 (102)
T 1wez_A 93 G 93 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 203
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=128.84 Aligned_cols=81 Identities=23% Similarity=0.410 Sum_probs=74.7
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||.++|+++|+++|++||.|.+|+|..+ +.++|||||+|.+.++|.+|++.||+..|.|+.|+|.|++.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 3489999999999999999999999999999999665 44799999999999999999999999999999999999987
Q ss_pred chh
Q 036905 237 KRE 239 (354)
Q Consensus 237 ~~~ 239 (354)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 204
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-18 Score=140.23 Aligned_cols=83 Identities=18% Similarity=0.384 Sum_probs=77.7
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeE--EEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCc----eeCCee
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISS--VKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGI----LFHQKP 228 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~----~i~g~~ 228 (354)
...++|||+|||+++|+++|+++|++||.|.. |+|++++ +|.+||||||+|.+. +|.+|+..|||. .|.|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34589999999999999999999999999977 9999998 999999999999999 999999999999 999999
Q ss_pred EEEEeccCchh
Q 036905 229 LYVAIAQTKRE 239 (354)
Q Consensus 229 l~v~~a~~~~~ 239 (354)
|+|.++++++.
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987643
No 205
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-18 Score=130.43 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=71.7
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc--eeCCeeEEEEec
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI--LFHQKPLYVAIA 234 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~--~i~g~~l~v~~a 234 (354)
..++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|++.++|.+|++.|++. .|.|++|+|.|+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 3489999999999999999999999999999999874 789999999999999999998764 599999999999
Q ss_pred cCchhh
Q 036905 235 QTKRER 240 (354)
Q Consensus 235 ~~~~~~ 240 (354)
+.+..+
T Consensus 89 ~~~~~~ 94 (104)
T 1wex_A 89 TSKRIT 94 (104)
T ss_dssp SSSSCC
T ss_pred cCcccc
Confidence 877543
No 206
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=125.90 Aligned_cols=73 Identities=26% Similarity=0.414 Sum_probs=67.2
Q ss_pred CCeEEEcCCCCCC------cHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCe-EEE
Q 036905 53 TFIPFTVNLASTI------DNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGM-ELY 125 (354)
Q Consensus 53 ~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~-~i~ 125 (354)
+++|||+|||.++ ++++|+++|++||.|.+|++. ..+|+++|||||+|.+.++|++|++.|||..+.|+ .|.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999999 789999999999999999987 45899999999999999999999999999999998 765
Q ss_pred e
Q 036905 126 A 126 (354)
Q Consensus 126 ~ 126 (354)
+
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 4
No 207
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=6e-18 Score=134.83 Aligned_cols=84 Identities=21% Similarity=0.366 Sum_probs=78.5
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|++|++.|||..|.|+.|.+
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 345567899999999999999999999999999999999998 9999999999999999999999999999999999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 97 ~~a~~ 101 (126)
T 3ex7_B 97 DWCFV 101 (126)
T ss_dssp EESEE
T ss_pred EEecC
Confidence 88765
No 208
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-18 Score=124.10 Aligned_cols=75 Identities=21% Similarity=0.426 Sum_probs=72.1
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
++|||+|||.++++++|+++|++||.|.++.++.++ +|.++|||||+|.+.++|.+|++.++ ..++|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999987 79999999999999999999999999 9999999999987
No 209
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=126.08 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=75.6
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||.++++++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+. ++..|.|++|+|.++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecC
Confidence 34899999999999999999999999999999999997 79999999999999999999999 4789999999999998
Q ss_pred Cchh
Q 036905 236 TKRE 239 (354)
Q Consensus 236 ~~~~ 239 (354)
.+..
T Consensus 92 ~~~~ 95 (103)
T 2cqg_A 92 SKQS 95 (103)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 8754
No 210
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=128.07 Aligned_cols=80 Identities=23% Similarity=0.410 Sum_probs=73.8
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||.++|+++|+++|++||.| +++.+.++.++|||||+|.+.++|.+|+..|||..|.|++|+|.|+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 45899999999999999999999999977 667777889999999999999999999999999999999999999987
Q ss_pred chh
Q 036905 237 KRE 239 (354)
Q Consensus 237 ~~~ 239 (354)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 211
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=128.89 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=75.7
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|..+ +.++|||||+|.+.++|++|++.||+..|.|+.|.+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34556789999999999999999999999999999999654 5689999999999999999999999999999999998
Q ss_pred cccccc
Q 036905 128 SLRAGR 133 (354)
Q Consensus 128 ~~~~~~ 133 (354)
+....+
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 877643
No 212
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=1.8e-17 Score=137.16 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=78.8
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|++||+.||+..|.|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999999999999998 8999999999999999999999999999999999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 114 ~~a~~ 118 (156)
T 1h2v_Z 114 DWDAG 118 (156)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 88765
No 213
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=6.2e-18 Score=133.14 Aligned_cols=81 Identities=9% Similarity=0.114 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCC---eeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGD---IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|++||+ +|+..|+|+.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 455789999999999999999999999999 899999999999999999999999999999999 9999999999997
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 76654
No 214
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=4.6e-18 Score=128.97 Aligned_cols=85 Identities=27% Similarity=0.485 Sum_probs=77.3
Q ss_pred cCCceEEEeCCCCccCHHHHH----HHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 036905 156 ILDKNLYVKNINDDVDEIELK----QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~----~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 231 (354)
...++|||+|||.++++++|+ ++|+.||.|.+|.+.. +|.++|||||+|.+.++|.+|+..|||..|.|++|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 345899999999999999999 9999999999999874 4667899999999999999999999999999999999
Q ss_pred EeccCchhhhH
Q 036905 232 AIAQTKRERTS 242 (354)
Q Consensus 232 ~~a~~~~~~~~ 242 (354)
.|++++.....
T Consensus 84 ~~a~~~~~~~~ 94 (97)
T 1nu4_A 84 QYAKTDSDIIA 94 (97)
T ss_dssp EECSSCCTHHH
T ss_pred EEccCCCcccc
Confidence 99998876543
No 215
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.73 E-value=9.3e-18 Score=141.17 Aligned_cols=118 Identities=19% Similarity=0.232 Sum_probs=98.6
Q ss_pred ccCCCCccceeEEEecCchhhHHHHHHhcccccccccc--------ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCe
Q 036905 9 NNNDSAILGTPFSLYVGDLDSTDLLRLCSALIASIDVH--------SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDI 80 (354)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i 80 (354)
....+.+.|++|+.|.+..+++.+++++...+....+. .......++|||+|||.++|+++|+++|+.||.|
T Consensus 47 ~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v 126 (175)
T 1fje_B 47 DVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEI 126 (175)
T ss_dssp EEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEE
T ss_pred ECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeE
Confidence 33456789999999999999999998776655422221 1223356899999999999999999999999988
Q ss_pred eEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 81 QSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 81 ~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
..+ +.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.+.+..
T Consensus 127 ~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 127 RLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp EEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred EEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 755 5589999999999999999999999999999999999988765
No 216
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-18 Score=124.94 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=70.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
++|||+|||+++|+++|+++|++||.|.+|++..++ +|+++|||||+|.+.++|++|++.++ ..++|+.|.+.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 479999999999999999999999999999999998 89999999999999999999999988 999999988765
No 217
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.4e-18 Score=130.40 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
.....++|||+|||+++|+++|+++|+.||. .+|+|++|++|+++|||||+|.+.++|++||+ +|+..+.++.|.+..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456689999999999999999999999995 59999999999999999999999999999995 799999999998765
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 89 ~~~ 91 (102)
T 1wez_A 89 NST 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 443
No 218
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=129.93 Aligned_cols=75 Identities=19% Similarity=0.365 Sum_probs=69.7
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~ 122 (354)
......++|||+|||+++|+++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|++|++.|||..+.++
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 445567899999999999999999999999999999999999999999999999999999999999999999543
No 219
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=135.21 Aligned_cols=82 Identities=26% Similarity=0.427 Sum_probs=76.7
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.....+.++|||+|||.++|+++|+++|+.||.|.+|++..++ +|+++|||||+|.+.++|++|++.|||..+.|+.|.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999999999999999999997 899999999999999999999999999999999998
Q ss_pred ecc
Q 036905 126 APS 128 (354)
Q Consensus 126 ~~~ 128 (354)
+.+
T Consensus 137 v~~ 139 (140)
T 2ku7_A 137 VNL 139 (140)
T ss_dssp EEC
T ss_pred EEe
Confidence 765
No 220
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-18 Score=127.69 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=74.0
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
.++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 3799999999999999999999999999999999986 89999999999999999999999999999999999988764
No 221
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=6.9e-18 Score=130.06 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCC------cHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCe
Q 036905 49 MATPTFIPFTVNLASTI------DNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~ 122 (354)
.....++|||+|||+++ |+++|+++|++||.|.+|+|. ..+|+++|||||+|.+.++|++|+..|||..+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34457899999999999 789999999999999999988 45899999999999999999999999999999998
Q ss_pred -EEEeccccc
Q 036905 123 -ELYAPSLRA 131 (354)
Q Consensus 123 -~i~~~~~~~ 131 (354)
.|.+.+...
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 999877654
No 222
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.8e-18 Score=129.23 Aligned_cols=80 Identities=18% Similarity=0.257 Sum_probs=75.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeE-EEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISS-VKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~-v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||+++|+++|+++|+.||.|.. |.|+.+.+|+++|||||+|.+.++|.+|+.. |+..|+|+.|+|.++.+
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence 489999999999999999999999999987 8898888999999999999999999999997 99999999999999876
Q ss_pred ch
Q 036905 237 KR 238 (354)
Q Consensus 237 ~~ 238 (354)
++
T Consensus 94 ~~ 95 (104)
T 1wg5_A 94 AE 95 (104)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 223
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7e-18 Score=129.78 Aligned_cols=82 Identities=20% Similarity=0.145 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeE-EEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQS-SKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
.....++|||+|||+++|+++|+++|+.||.|.+ |+|+.+.+|+++|||||+|.+.++|++||+. |+..++|+.|.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 4456789999999999999999999999999987 8898888999999999999999999999997 9999999999876
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
....
T Consensus 90 ~~~~ 93 (104)
T 1wg5_A 90 KSSR 93 (104)
T ss_dssp EECT
T ss_pred ECCH
Confidence 6543
No 224
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-18 Score=132.71 Aligned_cols=79 Identities=23% Similarity=0.396 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
..++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|++|| .|||..|.|+.|.+.+..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 45799999999999999999999999999999999998 7999999999999999999999 899999999999988766
Q ss_pred c
Q 036905 131 A 131 (354)
Q Consensus 131 ~ 131 (354)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 5
No 225
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-18 Score=133.27 Aligned_cols=82 Identities=15% Similarity=0.250 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCe-eEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDI-QSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
...+.++|||+|||+++|+++|+++|+.||.| .+|+|+.|.+|+++|||||+|.+.++|++||+. |+..|.|+.|.+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 44567899999999999999999999999999 899999999999999999999999999999986 9999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7665
No 226
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.4e-17 Score=126.48 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCc--cCCeEEEe
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT--VEGMELYA 126 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~--i~g~~i~~ 126 (354)
...++++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|++.++|++|++.|++.. +.|+.|.+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3456789999999999999999999999999999998754 7999999999999999999998764 89999998
Q ss_pred ccccccc
Q 036905 127 PSLRAGR 133 (354)
Q Consensus 127 ~~~~~~~ 133 (354)
.+.....
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 8877533
No 227
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.7e-17 Score=129.88 Aligned_cols=80 Identities=14% Similarity=0.226 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhh--CccCCeEEEe
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA--ATVEGMELYA 126 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng--~~i~g~~i~~ 126 (354)
...++++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|++.++|++|++.|++ ..+.|+.|.+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 4456789999999999999999999999999999999865 89999999999999999999885 5799999998
Q ss_pred ccccccc
Q 036905 127 PSLRAGR 133 (354)
Q Consensus 127 ~~~~~~~ 133 (354)
.+.....
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 8876533
No 228
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=130.26 Aligned_cols=84 Identities=24% Similarity=0.309 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH---HHHhhcCCeeEEEEEeCC-CC---CceeEEEEEeecHHHHHHHHHHhhhCccCC
Q 036905 49 MATPTFIPFTVNLASTIDNWKLH---QIFSKFGDIQSSKVVVSQ-DG---KSKGYGFVQYSTQESALNAIEKLYAATVEG 121 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~v~~d~-~g---~skg~aFV~F~~~e~A~~Ai~~lng~~i~g 121 (354)
.....++|||+|||+++++++|+ ++|++||.|.+|+|..+. ++ +++|||||+|.+.++|++||+.|||..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44567899999999999999999 999999999999999887 44 566999999999999999999999999999
Q ss_pred eEEEecccccc
Q 036905 122 MELYAPSLRAG 132 (354)
Q Consensus 122 ~~i~~~~~~~~ 132 (354)
+.|.+.+....
T Consensus 91 r~l~V~~a~~k 101 (111)
T 2cpi_A 91 RTLKASLGTTK 101 (111)
T ss_dssp EEEEEESCCCC
T ss_pred EEEEEEecccc
Confidence 99998887653
No 229
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=2e-18 Score=133.54 Aligned_cols=83 Identities=11% Similarity=0.188 Sum_probs=77.4
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCC---eeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGI---ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~---v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 233 (354)
..++|||+|||+++|+++|+++|+.||. |.+|+|+.+..|.++|||||+|.+.++|.+|+. ||+..|+|+.|+|.+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYE 88 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEE
Confidence 3489999999999999999999999998 899999999889999999999999999999999 999999999999999
Q ss_pred ccCchhh
Q 036905 234 AQTKRER 240 (354)
Q Consensus 234 a~~~~~~ 240 (354)
+.+++..
T Consensus 89 a~~~~~~ 95 (107)
T 2lmi_A 89 INNEDVD 95 (107)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 9876543
No 230
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=125.74 Aligned_cols=78 Identities=18% Similarity=0.359 Sum_probs=73.0
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC--CeeEEEEec
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH--QKPLYVAIA 234 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~--g~~l~v~~a 234 (354)
..++|||+|||.++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|++.|||..|. |++|+|.|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 3489999999999999999999999999999999865 789999999999999999999999999 999999999
Q ss_pred cCchh
Q 036905 235 QTKRE 239 (354)
Q Consensus 235 ~~~~~ 239 (354)
+++..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88753
No 231
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=1.2e-17 Score=132.64 Aligned_cols=80 Identities=18% Similarity=0.317 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
..++|||+|||.++|+++|+++|+.||.|.+|++..++ +|.++|||||+|.+.++|++|+ .|||..+.|+.|.+.+.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999999999999997 8999999999999999999999 799999999999988876
Q ss_pred cc
Q 036905 131 AG 132 (354)
Q Consensus 131 ~~ 132 (354)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 232
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=3.7e-18 Score=137.71 Aligned_cols=87 Identities=22% Similarity=0.345 Sum_probs=80.0
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+|..+. +++++|||||+|.+.++|++|++.|||..+.|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4445567899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred eccccccc
Q 036905 126 APSLRAGR 133 (354)
Q Consensus 126 ~~~~~~~~ 133 (354)
+.+.+..+
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 98877633
No 233
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.8e-18 Score=130.28 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=75.8
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCC-eeEEEEe-eCC-CCCeeeEEEEEeCCHHHHHHHHHHhC--CceeCCeeEEEE
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGI-ISSVKIM-RTN-RGISKGFGFVCFSNPDEANRAINTLN--GILFHQKPLYVA 232 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~-v~~v~i~-~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~--g~~i~g~~l~v~ 232 (354)
.++|||+|||.++|+++|+++|+.||. |.+|.++ .+. +|.++|||||+|.+.++|.+|+..|| +..|.|++|+|.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 379999999999999999999999998 9999998 565 77899999999999999999999996 589999999999
Q ss_pred eccCchh
Q 036905 233 IAQTKRE 239 (354)
Q Consensus 233 ~a~~~~~ 239 (354)
|++++..
T Consensus 88 ~a~~~~~ 94 (109)
T 2dis_A 88 WAEPEID 94 (109)
T ss_dssp ESCSSCS
T ss_pred EcCCCCC
Confidence 9987754
No 234
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=132.55 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=74.0
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHH----HHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCe
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLH----QIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~ 122 (354)
.....+.++|||+|||+++++++|+ ++|++||.|.+|.+. .+++++|||||+|.+.++|++|++.|||..+.|+
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 3445668899999999999999876 799999999988774 3688999999999999999999999999999999
Q ss_pred EEEeccccc
Q 036905 123 ELYAPSLRA 131 (354)
Q Consensus 123 ~i~~~~~~~ 131 (354)
.|.|.+...
T Consensus 101 ~l~V~~a~~ 109 (127)
T 2a3j_A 101 PLVITFSET 109 (127)
T ss_dssp CCEEEECCC
T ss_pred EEEEEEccC
Confidence 999888765
No 235
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=129.25 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCC-eeEEEEE-eCC-CCCceeEEEEEeecHHHHHHHHHHhh--hCccCCeEE
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGD-IQSSKVV-VSQ-DGKSKGYGFVQYSTQESALNAIEKLY--AATVEGMEL 124 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~v~-~d~-~g~skg~aFV~F~~~e~A~~Ai~~ln--g~~i~g~~i 124 (354)
..+.++|||+|||+++|+++|+++|+.||. |.+|.++ .+. +|+++|||||+|.+.++|++|++.|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 676 78999999999999999999999996 589999999
Q ss_pred Eecccccc
Q 036905 125 YAPSLRAG 132 (354)
Q Consensus 125 ~~~~~~~~ 132 (354)
.+.+....
T Consensus 85 ~V~~a~~~ 92 (109)
T 2dis_A 85 AVDWAEPE 92 (109)
T ss_dssp EEEESCSS
T ss_pred EEEEcCCC
Confidence 98887653
No 236
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.2e-17 Score=129.66 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=70.6
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.+|||+|||+++++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|.+|++.|||..|.|+.|+|.+++.+
T Consensus 29 ~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 29 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp EEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 7999999999999999999999999 9999998643 37899999999999999999999999999999999999765
Q ss_pred h
Q 036905 238 R 238 (354)
Q Consensus 238 ~ 238 (354)
.
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 237
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.72 E-value=1.8e-18 Score=129.42 Aligned_cols=77 Identities=23% Similarity=0.394 Sum_probs=72.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
++|||+|||.++++++|+++|+.||.|.+|++..+. +|+++|||||+|.+.+ |++|+..|||..+.|+.|.+.+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 589999999999999999999999999999999998 8999999999999999 9999999999999999999887665
No 238
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.7e-18 Score=130.36 Aligned_cols=77 Identities=9% Similarity=0.184 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
.++|||+|||+++|+++|+++|+.| .|.+|+|+.|++|+++|||||+|.+.++|++|| .+|+..++|+.|.+.....
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 899999999999999999999999999999999 6999999999999765543
No 239
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=5.2e-18 Score=124.34 Aligned_cols=72 Identities=21% Similarity=0.328 Sum_probs=67.7
Q ss_pred ceEEEeCCCCcc------CHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe-eEEE
Q 036905 159 KNLYVKNINDDV------DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK-PLYV 231 (354)
Q Consensus 159 ~~l~v~nl~~~~------t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~-~l~v 231 (354)
++|||+|||..+ ++++|+++|++||.|.+|.++ ..+|.++|||||+|.+.++|.+|+..|||..|.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 779999999999999999988 45889999999999999999999999999999999 8876
No 240
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=123.54 Aligned_cols=76 Identities=25% Similarity=0.448 Sum_probs=71.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.++|||+|||.++++++|+++|++||.|.+|+++ +|||||+|.+.++|.+|++.|||..|.|++|+|.+++++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 4899999999999999999999999999999998 579999999999999999999999999999999999887
Q ss_pred hhh
Q 036905 238 RER 240 (354)
Q Consensus 238 ~~~ 240 (354)
..+
T Consensus 81 ~~~ 83 (90)
T 2dnq_A 81 SKA 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 241
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=4.1e-18 Score=130.14 Aligned_cols=82 Identities=16% Similarity=0.345 Sum_probs=72.0
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC--CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ--DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~--~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
......++|||+|||+++|+++|+++|+.|| |.+|+|..+. +|+++|||||+|.+.++|++|+ .|||..+.|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3445678999999999999999999999999 9999999986 7999999999999999999999 8999999999998
Q ss_pred eccccc
Q 036905 126 APSLRA 131 (354)
Q Consensus 126 ~~~~~~ 131 (354)
+.+...
T Consensus 92 V~~a~~ 97 (100)
T 2j76_E 92 VDVADQ 97 (100)
T ss_dssp CEECCC
T ss_pred EEeccC
Confidence 777653
No 242
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.3e-18 Score=131.29 Aligned_cols=79 Identities=14% Similarity=0.252 Sum_probs=71.4
Q ss_pred cCCceEEEeCCCCc-cCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--ceeCCeeEEEE
Q 036905 156 ILDKNLYVKNINDD-VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG--ILFHQKPLYVA 232 (354)
Q Consensus 156 ~~~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g--~~i~g~~l~v~ 232 (354)
...++|||+|||++ +|+++|+++|++||.|.+|.|++ +||||||+|++.++|.+|++.||+ ..|.|++|+|.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34589999999998 99999999999999999999985 379999999999999999998864 56999999999
Q ss_pred eccCchh
Q 036905 233 IAQTKRE 239 (354)
Q Consensus 233 ~a~~~~~ 239 (354)
|++.+..
T Consensus 98 ~a~~~~~ 104 (112)
T 1x4f_A 98 LSEKYKK 104 (112)
T ss_dssp EECSCSS
T ss_pred ECccccc
Confidence 9987654
No 243
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=127.32 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=72.2
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC-----eeEEEE
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-----KPLYVA 232 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g-----~~l~v~ 232 (354)
.++|||+|||.++|+++|+++|+.||.|.+|+|+.+ |||||+|.+.++|.+||+.|||..|.| +.|+|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 489999999999999999999999999999999986 799999999999999999999999999 999999
Q ss_pred eccCchh
Q 036905 233 IAQTKRE 239 (354)
Q Consensus 233 ~a~~~~~ 239 (354)
+++++..
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9998654
No 244
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=125.57 Aligned_cols=81 Identities=12% Similarity=0.220 Sum_probs=71.7
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhh--hCccCCeEEE
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY--AATVEGMELY 125 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln--g~~i~g~~i~ 125 (354)
....++++|||+|||+++|+++|+++|++||.|.+|.++++ ||||||+|.+.++|++|++.|+ +..+.|+.|.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 34456789999999999999999999999999999998864 8999999999999999999886 4669999999
Q ss_pred eccccccc
Q 036905 126 APSLRAGR 133 (354)
Q Consensus 126 ~~~~~~~~ 133 (354)
+.+.....
T Consensus 85 V~~a~~~~ 92 (101)
T 2cq1_A 85 IQYSNHKE 92 (101)
T ss_dssp EEECSCSS
T ss_pred EEEcCccc
Confidence 98877533
No 245
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-17 Score=126.34 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=72.9
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||..+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..|.|++|+|.++.+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 34899999999999999999999999988766 44778999999999999999999999999999999999999987
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+..+
T Consensus 91 ~~~~ 94 (96)
T 1fjc_A 91 KGGT 94 (96)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 246
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=132.00 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=77.3
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCe----eEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGII----SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v----~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 232 (354)
...+|||+|||+++|+++|+++|+.||.| .+|.|+.+.+|+++|||||+|++.++|.+|+.. |+..|+||.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 34799999999999999999999999975 689999999999999999999999999999996 9999999999999
Q ss_pred eccCchhhhH
Q 036905 233 IAQTKRERTS 242 (354)
Q Consensus 233 ~a~~~~~~~~ 242 (354)
.+.+++....
T Consensus 101 ~a~~~e~~~~ 110 (123)
T 2dha_A 101 RSTAAEVQQV 110 (123)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHHH
Confidence 9987665443
No 247
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=126.28 Aligned_cols=82 Identities=26% Similarity=0.336 Sum_probs=74.4
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
....+.++|||+|||+++|+++|+++|++||.| +++.+.+++++|||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 345678999999999999999999999999977 56777789999999999999999999999999999999999988
Q ss_pred ccccc
Q 036905 128 SLRAG 132 (354)
Q Consensus 128 ~~~~~ 132 (354)
+....
T Consensus 87 ~a~~~ 91 (101)
T 2fc9_A 87 LQGPR 91 (101)
T ss_dssp ECSSC
T ss_pred EcCCC
Confidence 87653
No 248
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=133.45 Aligned_cols=79 Identities=27% Similarity=0.430 Sum_probs=74.5
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
...++|||+|||..+++++|+++|+.||.|.+++++.++ +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 345899999999999999999999999999999999986 8899999999999999999999999999999999999986
No 249
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=121.17 Aligned_cols=74 Identities=23% Similarity=0.415 Sum_probs=70.0
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh-CCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL-NGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l-~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.| ||..+.|++|+|.||+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3489999999999999999999999999999999974 789999999999999999999 9999999999999985
No 250
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.6e-17 Score=127.06 Aligned_cols=75 Identities=23% Similarity=0.347 Sum_probs=70.9
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.++|||+|||.++++++|+++|+.||.|.++++.+ ++|||||+|.+.++|.+|+..|||..|.|++|+|.|++++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 37999999999999999999999999999999984 4899999999999999999999999999999999999864
No 251
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=121.71 Aligned_cols=77 Identities=19% Similarity=0.393 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...+.++|||+|||+++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 34577899999999999999999999999999999997 68999999999999999999999999999999888
Q ss_pred cccc
Q 036905 129 LRAG 132 (354)
Q Consensus 129 ~~~~ 132 (354)
....
T Consensus 77 a~~~ 80 (90)
T 2dnq_A 77 SKNK 80 (90)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7663
No 252
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=124.66 Aligned_cols=82 Identities=29% Similarity=0.438 Sum_probs=74.3
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
...++|||+|||.++|+++|+++|+.|+ .|.++.+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3448999999999999999999999873 67788776 8899999999999999999999999999999999999999
Q ss_pred cCchhh
Q 036905 235 QTKRER 240 (354)
Q Consensus 235 ~~~~~~ 240 (354)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 987653
No 253
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=128.00 Aligned_cols=76 Identities=29% Similarity=0.482 Sum_probs=72.8
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
++|||+|||.++|+++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.+++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999987 68999999999999999999999999999999999998875
No 254
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3.4e-17 Score=126.81 Aligned_cols=78 Identities=33% Similarity=0.589 Sum_probs=71.9
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
...++|||+|||.++|+++|+++|++||.|.+|.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.|++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 345899999999999999999999999999999998 6899999999999999999999999999999999998
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
.+..+
T Consensus 102 ~~~~r 106 (108)
T 2jvo_A 102 LPAKR 106 (108)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 87554
No 255
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-18 Score=132.33 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=74.3
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||.++|+++|+++|+.||.|.. .++.+. +|.++|||||+|.+.++|.+|++ |||..|.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4589999999999999999999999999988 555554 78899999999999999999998 99999999999999998
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
++..+
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87654
No 256
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=129.48 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
..++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +|+++|||||+|.+.++|++||+. ++..|.|+.|.+.+..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 35899999999999999999999999999999999997 899999999999999999999987 9999999999988876
Q ss_pred c
Q 036905 131 A 131 (354)
Q Consensus 131 ~ 131 (354)
.
T Consensus 105 ~ 105 (116)
T 1x4b_A 105 A 105 (116)
T ss_dssp S
T ss_pred C
Confidence 5
No 257
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=6.7e-17 Score=122.61 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=70.3
Q ss_pred CCceEEEeCCCC-ccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNIND-DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~-~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..++|||+|||. ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|+..|||..+.|++|+|.+++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 448999999998 99999999999999999999993 7899999999999999999999999999999999998
Q ss_pred Cch
Q 036905 236 TKR 238 (354)
Q Consensus 236 ~~~ 238 (354)
.+.
T Consensus 94 ~~~ 96 (97)
T 2xnq_A 94 SNA 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 258
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=127.35 Aligned_cols=78 Identities=23% Similarity=0.406 Sum_probs=73.7
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||..+++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|+..|||..|.|++|+|.|+++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 3489999999999999999999999999999999986 78999999999999999999999999999999999988
Q ss_pred chh
Q 036905 237 KRE 239 (354)
Q Consensus 237 ~~~ 239 (354)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4g_A 99 SPD 101 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 259
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.4e-17 Score=146.35 Aligned_cols=80 Identities=19% Similarity=0.278 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcC--CeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFG--DIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
..++|||+||++++|+++|+++|+.|| .|.+|+|++|+ +|+++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999998 999999999999999999999999999999999999877
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 653
No 260
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=3.6e-18 Score=137.89 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=75.8
Q ss_pred eEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccccccccccccccccccCCCchhhhhcCCceEEEeCCCCccCHHH
Q 036905 95 GYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRAGRIQESASFNNLYVKNLDDDVTEEILDKNLYVKNINDDVDEIE 174 (354)
Q Consensus 95 g~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~ 174 (354)
|++|.+|+..+.+..++..+..+. ++...-... .. ..........++|||+|||+++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-gg~~~g~~~------------g~------~~~~~~~~~~~~lfV~nLp~~~te~d 62 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT-GGQQMGRGS------------GD------SEFTVQSTTGHCVHMRGLPYKATEND 62 (139)
T ss_dssp --------------------------------------------------------------CCCCEECCSCCTTCCHHH
T ss_pred CcccccccCccccchhcccchhcc-CCCCCCCCC------------CC------cccCCCCCCCCEEEEeCCCCCCCHHH
Confidence 578888888877777776544332 221110000 00 00011223347999999999999999
Q ss_pred HHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchhh
Q 036905 175 LKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRER 240 (354)
Q Consensus 175 L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~~ 240 (354)
|+++|+.|| |++|+|+.+.+|+++|||||+|++.++|.+|| .+|+..|.|+.|+|.++..++..
T Consensus 63 L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 63 IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC-
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCC
Confidence 999999999 77999999999999999999999999999999 79999999999999999877543
No 261
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=132.09 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=75.3
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEE-EEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSV-KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v-~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
...+|||+|||+++|+++|+++|+.||.|.++ .+..+.+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 34899999999999999999999999999884 44555599999999999999999999999 99999999999999998
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
+++..
T Consensus 103 ~~~~~ 107 (124)
T 1wel_A 103 KKGML 107 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87644
No 262
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.6e-17 Score=125.39 Aligned_cols=76 Identities=29% Similarity=0.438 Sum_probs=72.1
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.++|||+|||..+|+++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.|++++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 479999999999999999999999999999999865 789999999999999999999999999999999999876
Q ss_pred h
Q 036905 238 R 238 (354)
Q Consensus 238 ~ 238 (354)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 263
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=5.2e-17 Score=135.60 Aligned_cols=83 Identities=24% Similarity=0.412 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
...+.++|||+|||+++|+++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|++||+.|||..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557789999999999999999999999999999999997 99999999999999999999999999999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 148 ~a~~ 151 (165)
T 1rk8_A 148 WCFV 151 (165)
T ss_dssp ESEE
T ss_pred EecC
Confidence 8765
No 264
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-17 Score=131.23 Aligned_cols=79 Identities=20% Similarity=0.171 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCe----eEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDI----QSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.|.+|+++|||||+|.+.++|++||+. |+..+.++.|.+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999985 689999999999999999999999999999985 999999999886
Q ss_pred cccc
Q 036905 127 PSLR 130 (354)
Q Consensus 127 ~~~~ 130 (354)
....
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 5543
No 265
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=7.5e-18 Score=130.34 Aligned_cols=82 Identities=12% Similarity=0.140 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCC---eeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGD---IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
.....++|||+|||+++|+++|+++|+.||. |.+|+|+.+..|+++|||||+|.+.++|++||+ +|+..++|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 4456789999999999999999999999988 899999999899999999999999999999999 999999999998
Q ss_pred eccccc
Q 036905 126 APSLRA 131 (354)
Q Consensus 126 ~~~~~~ 131 (354)
+.+...
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 766543
No 266
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=8.3e-17 Score=144.49 Aligned_cols=118 Identities=22% Similarity=0.252 Sum_probs=102.1
Q ss_pred CccceeEEEecCchhhHHHHH-HhccccccccccccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCC
Q 036905 14 AILGTPFSLYVGDLDSTDLLR-LCSALIASIDVHSAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGK 92 (354)
Q Consensus 14 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~ 92 (354)
.+.|++|+.|.+..++..++. ++...+....+......+.++|||+|||.++|+++|+++|+.||.|.+|+|+.|.+|+
T Consensus 56 ~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 135 (261)
T 3sde_A 56 RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR 135 (261)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSC
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCC
Confidence 347999999999999998876 6666676555555566678899999999999999999999999999999999999999
Q ss_pred ceeEEEEEeecHHHHHHHHHHhhhC-ccC---CeEEEeccccc
Q 036905 93 SKGYGFVQYSTQESALNAIEKLYAA-TVE---GMELYAPSLRA 131 (354)
Q Consensus 93 skg~aFV~F~~~e~A~~Ai~~lng~-~i~---g~~i~~~~~~~ 131 (354)
++|||||+|.+.++|.+|+..||+. .+. ++.|.+.+...
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 9999999999999999999999654 443 88888777654
No 267
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=125.14 Aligned_cols=79 Identities=23% Similarity=0.424 Sum_probs=71.8
Q ss_pred cCCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 156 ILDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
...++|||+|||.++|+++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|.|++|+|.+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3348999999999999999999999999997 666654 468999999999999999999999999999999999998
Q ss_pred Cch
Q 036905 236 TKR 238 (354)
Q Consensus 236 ~~~ 238 (354)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 268
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4e-17 Score=120.60 Aligned_cols=77 Identities=26% Similarity=0.309 Sum_probs=70.4
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHh-hhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKL-YAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~l-ng~~i~g~~i~~ 126 (354)
......++|||+|||.++|+++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.| +|..+.|+.|.+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3445678999999999999999999999999999999986 3899999999999999999999 999999999988
Q ss_pred ccc
Q 036905 127 PSL 129 (354)
Q Consensus 127 ~~~ 129 (354)
.+.
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 765
No 269
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=8.6e-18 Score=121.13 Aligned_cols=74 Identities=18% Similarity=0.394 Sum_probs=70.3
Q ss_pred eEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 160 NLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
+|||+|||.++++++|+++|++||.|.++.++.+. +|.++|||||+|.+.++|.+|++. ++..|.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999987 789999999999999999999994 899999999999886
No 270
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=2.3e-17 Score=127.92 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
.....++|||+|||+++|+++|+++|+.|| .|..|+|.. +.++|||||+|.+.++|++||+.|||..+.|+.|.+.
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344568999999999999999999999999 899998854 3578999999999999999999999999999999987
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 7654
No 271
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.6e-17 Score=123.02 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=72.1
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccC--CeEEE
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE--GMELY 125 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~--g~~i~ 125 (354)
....+.++|||+|||+++|+++|+++|++||.|.+|++..+ +|||||+|.+.++|++|++.|||..+. |+.|.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 34556789999999999999999999999999999998754 789999999999999999999999999 99999
Q ss_pred eccccc
Q 036905 126 APSLRA 131 (354)
Q Consensus 126 ~~~~~~ 131 (354)
+.+...
T Consensus 87 V~~a~~ 92 (97)
T 1why_A 87 VDFAKS 92 (97)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 888765
No 272
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=2.4e-17 Score=126.23 Aligned_cols=80 Identities=33% Similarity=0.614 Sum_probs=75.4
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
++|||+|||.++++++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.++.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCc
Confidence 79999999999999999999999999999999999999999999999999999999999 9999999999999998775
Q ss_pred hh
Q 036905 239 ER 240 (354)
Q Consensus 239 ~~ 240 (354)
..
T Consensus 88 ~~ 89 (102)
T 2xs2_A 88 NL 89 (102)
T ss_dssp --
T ss_pred ch
Confidence 43
No 273
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=127.45 Aligned_cols=75 Identities=27% Similarity=0.333 Sum_probs=70.8
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
++|||+|||..+++++|+++|++||.|.+|.++. ++|||||+|.+.++|.+|+..|||..|.|++|+|.|+....
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 7999999999999999999999999999999885 47899999999999999999999999999999999997643
No 274
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=127.73 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=70.4
Q ss_pred CCCCCCeEEEcCCCCC-CcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhC--ccCCeEEE
Q 036905 49 MATPTFIPFTVNLAST-IDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA--TVEGMELY 125 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~--~i~g~~i~ 125 (354)
...++++|||+|||++ +|+++|+++|++||.|.+|+|++ +||||||+|.+.++|++|++.||+. .+.|+.|+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999998 99999999999999999999974 4899999999999999999999864 59999999
Q ss_pred eccccc
Q 036905 126 APSLRA 131 (354)
Q Consensus 126 ~~~~~~ 131 (354)
+.+...
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 888765
No 275
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=6.5e-18 Score=121.80 Aligned_cols=73 Identities=18% Similarity=0.299 Sum_probs=68.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 55 IPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 55 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
+|||+|||+++|+++|+++|++||.|.+|++..++ +|+++|||||+|.+.++|++|++ +++..+.|+.|.+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEE
Confidence 59999999999999999999999999999999998 89999999999999999999998 589999999887654
No 276
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.9e-17 Score=120.67 Aligned_cols=76 Identities=24% Similarity=0.411 Sum_probs=71.0
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||.++|+++|+++|+.||.|.+|.++++ ||||+|.+.++|.+|+..|||..|.|+.|+|.++++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 3489999999999999999999999999999999854 999999999999999999999999999999999987
Q ss_pred chh
Q 036905 237 KRE 239 (354)
Q Consensus 237 ~~~ 239 (354)
+..
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 754
No 277
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=5.3e-17 Score=124.58 Aligned_cols=76 Identities=28% Similarity=0.489 Sum_probs=71.3
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.++|||+|||.++|+++|+++|+.||.|.+|.+++ +||||+|.+.++|.+|++.|||..|.|++|+|.|++++
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 48999999999999999999999999999999874 59999999999999999999999999999999999887
Q ss_pred hhh
Q 036905 238 RER 240 (354)
Q Consensus 238 ~~~ 240 (354)
..+
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 278
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.7e-18 Score=133.83 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
.....++|||+|||+++|+++|+++|+.||.|.++.++.+. +|+++|||||+|.+.++|++||+ |||..|+|+.|.+.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566899999999999999999999999999885555555 99999999999999999999999 99999999999987
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7654
No 279
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=6.1e-17 Score=126.80 Aligned_cols=79 Identities=22% Similarity=0.420 Sum_probs=73.7
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.++|||+|||..+|+++|+++|+.||.|.+|.++.+. .++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+.++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 4799999999999999999999999999999999764 45899999999999999999999999999999999999864
Q ss_pred h
Q 036905 238 R 238 (354)
Q Consensus 238 ~ 238 (354)
.
T Consensus 86 ~ 86 (115)
T 3lqv_A 86 R 86 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 280
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.5e-17 Score=123.97 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
...++|||+|||.++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|++|+..|||..+.|+.|.+.+.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 446899999999999999999999999999999997 458999999999999999999999999999999988765
No 281
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=1.1e-16 Score=126.85 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=70.6
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCceeCC--eeEEEEecc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGF-GFVCFSNPDEANRAINTLNGILFHQ--KPLYVAIAQ 235 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~-afV~f~~~~~A~~Ai~~l~g~~i~g--~~l~v~~a~ 235 (354)
..|||+||++.+|+++|+++|++||.|.+|++..+ ++|| |||+|.+.++|.+|++.|||..|.| ++|+|.|++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 56889999999999999999999999999999875 3677 9999999999999999999999988 999999998
Q ss_pred Cch
Q 036905 236 TKR 238 (354)
Q Consensus 236 ~~~ 238 (354)
.+.
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 764
No 282
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.7e-17 Score=127.40 Aligned_cols=81 Identities=28% Similarity=0.458 Sum_probs=73.2
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCe----eEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGII----SSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v----~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 232 (354)
..++|||+|||.++|+++|+++|+.||.| ..+.+. +|.++|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34899999999999999999999999998 445444 67889999999999999999999999999999999999
Q ss_pred eccCchhh
Q 036905 233 IAQTKRER 240 (354)
Q Consensus 233 ~a~~~~~~ 240 (354)
|++++..+
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99987654
No 283
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.6e-17 Score=120.48 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=71.5
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
....+.++|||+|||+++|+++|+++|+.||.|.+|++. ++||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 445677899999999999999999999999999999997 4499999999999999999999999999999988
Q ss_pred ccccc
Q 036905 128 SLRAG 132 (354)
Q Consensus 128 ~~~~~ 132 (354)
+....
T Consensus 78 ~a~~~ 82 (92)
T 2dgt_A 78 LSTSR 82 (92)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 87653
No 284
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=6.8e-18 Score=129.10 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
.....++|||+|||+++|+++|+++|+.||.|.+ .++.+. +|+++|||||+|.+.++|++|++ |||..+.|+.|.+.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999999988 666666 89999999999999999999998 99999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 91 ~a~~ 94 (101)
T 1fj7_A 91 KPKG 94 (101)
T ss_dssp CCSC
T ss_pred EcCC
Confidence 7664
No 285
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.9e-17 Score=124.38 Aligned_cols=80 Identities=30% Similarity=0.412 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
.....++|||+|||.++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 4456789999999999999999999999999999999876 79999999999999999999999999999999988
Q ss_pred ccccc
Q 036905 129 LRAGR 133 (354)
Q Consensus 129 ~~~~~ 133 (354)
.+...
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 77633
No 286
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.1e-17 Score=122.98 Aligned_cols=82 Identities=23% Similarity=0.384 Sum_probs=74.4
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||+++|+++|+++|+.|+ +|+++.+. +++++|||||+|.+.++|++||+.|||..|.|+.|.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4456789999999999999999999999873 67888887 8999999999999999999999999999999999998
Q ss_pred cccccc
Q 036905 127 PSLRAG 132 (354)
Q Consensus 127 ~~~~~~ 132 (354)
.+....
T Consensus 87 ~~a~~~ 92 (102)
T 2fc8_A 87 DWAKPK 92 (102)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 887653
No 287
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.5e-17 Score=119.99 Aligned_cols=77 Identities=25% Similarity=0.382 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...+.++|||+|||+++|+++|+++|+.||.|.+|++. ++||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45667899999999999999999999999999999997 44999999999999999999999999999999888
Q ss_pred cccc
Q 036905 129 LRAG 132 (354)
Q Consensus 129 ~~~~ 132 (354)
....
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
No 288
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.8e-17 Score=120.16 Aligned_cols=76 Identities=21% Similarity=0.398 Sum_probs=70.9
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||.++|+++|+++|+.||.|.+|+++++ ||||+|.+.++|.+|++.|||..|.|++|+|.++++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3489999999999999999999999999999999854 999999999999999999999999999999999987
Q ss_pred chh
Q 036905 237 KRE 239 (354)
Q Consensus 237 ~~~ 239 (354)
+..
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 289
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.5e-17 Score=123.34 Aligned_cols=78 Identities=24% Similarity=0.410 Sum_probs=71.2
Q ss_pred cCCceEEEeCCCC-ccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 156 ILDKNLYVKNIND-DVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 156 ~~~~~l~v~nl~~-~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
...++|||+|||. .+++++|+++|+.||.|.+|.+. +|||||+|.+.++|.+|+..|||..+.|++|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 3458999999998 99999999999999999999994 689999999999999999999999999999999999
Q ss_pred cCchhh
Q 036905 235 QTKRER 240 (354)
Q Consensus 235 ~~~~~~ 240 (354)
+.+...
T Consensus 81 ~~~~~~ 86 (96)
T 2kvi_A 81 SSNARP 86 (96)
T ss_dssp ECCCC-
T ss_pred CcCCCC
Confidence 876543
No 290
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=2.1e-17 Score=125.28 Aligned_cols=81 Identities=25% Similarity=0.319 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH----HHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 50 ATPTFIPFTVNLASTIDNWKLH----QIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
..++++|||+|||.++|+++|+ ++|++||.|.+|++.. +|.++|||||+|.+.++|++|++.|||..+.|+.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 4567899999999999999999 9999999999998863 578899999999999999999999999999999999
Q ss_pred ecccccc
Q 036905 126 APSLRAG 132 (354)
Q Consensus 126 ~~~~~~~ 132 (354)
+.+....
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 8887653
No 291
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4e-17 Score=126.46 Aligned_cols=77 Identities=22% Similarity=0.449 Sum_probs=69.9
Q ss_pred CCceEEE--eCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee-----CCeeE
Q 036905 157 LDKNLYV--KNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF-----HQKPL 229 (354)
Q Consensus 157 ~~~~l~v--~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i-----~g~~l 229 (354)
+.++||| +||++++|+++|+++|++||.|.+|.+..+ ||||||+|.+.++|.+|++.|||+.| .|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 3478999 669999999999999999999999988753 79999999999999999999999998 78999
Q ss_pred EEEeccCch
Q 036905 230 YVAIAQTKR 238 (354)
Q Consensus 230 ~v~~a~~~~ 238 (354)
+|.|++...
T Consensus 99 ~v~~a~~~p 107 (114)
T 2cq2_A 99 YLNFVEKVQ 107 (114)
T ss_dssp EEEEESCCC
T ss_pred EEEecccCc
Confidence 999997653
No 292
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.9e-17 Score=123.36 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=72.6
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
....+.++|||+|||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 34456789999999999999999999999999999999854 7999999999999999999999999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 85 ~a~~ 88 (99)
T 2cpj_A 85 FACH 88 (99)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 8765
No 293
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-17 Score=129.97 Aligned_cols=85 Identities=16% Similarity=0.313 Sum_probs=73.2
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....++++|||+|||+++|+++|+++|+.||.|.+|.+..+. +|+++|||||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567899999999999999999999999999443333322 7899999999999999999999999999999999998
Q ss_pred cccccc
Q 036905 127 PSLRAG 132 (354)
Q Consensus 127 ~~~~~~ 132 (354)
.+....
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 887763
No 294
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=1.1e-16 Score=122.69 Aligned_cols=77 Identities=25% Similarity=0.450 Sum_probs=71.0
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
....+.++|||+|||+++|+++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 344567899999999999999999999999999999987 5699999999999999999999999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 79 ~a~~ 82 (103)
T 2dgu_A 79 FAKP 82 (103)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8766
No 295
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=8.2e-17 Score=125.05 Aligned_cols=74 Identities=24% Similarity=0.488 Sum_probs=69.9
Q ss_pred CceEEEeCCCCc-cCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDD-VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.. +++++|+++|++||.|.+|.+ ++|||||+|.+.++|.+|++.|||..|.|+.|+|.+++.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 479999999999 999999999999999999999 478999999999999999999999999999999999985
Q ss_pred ch
Q 036905 237 KR 238 (354)
Q Consensus 237 ~~ 238 (354)
+.
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 296
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.7e-17 Score=124.99 Aligned_cols=81 Identities=15% Similarity=0.253 Sum_probs=73.1
Q ss_pred ceEEEeCC----CCccCHHHHHHHhhcCCCeeEEEEeeCC-CCCeeeEEEEEeCC----HHH----HHHHHH--HhCCce
Q 036905 159 KNLYVKNI----NDDVDEIELKQYFSQCGIISSVKIMRTN-RGISKGFGFVCFSN----PDE----ANRAIN--TLNGIL 223 (354)
Q Consensus 159 ~~l~v~nl----~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~g~~kg~afV~f~~----~~~----A~~Ai~--~l~g~~ 223 (354)
.+|||+|| ++.+++++|+++|+.||+|.+|.++.|+ +|.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999 99999999999996 333 889988 889999
Q ss_pred eCCeeEEEEeccCchh
Q 036905 224 FHQKPLYVAIAQTKRE 239 (354)
Q Consensus 224 i~g~~l~v~~a~~~~~ 239 (354)
|+|++|+|.+-+....
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999876544
No 297
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-18 Score=135.16 Aligned_cols=83 Identities=27% Similarity=0.519 Sum_probs=78.0
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeE--------EEEeeCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISS--------VKIMRTN-RGISKGFGFVCFSNPDEANRAINTLNGILFHQKP 228 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--------v~i~~~~-~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~ 228 (354)
.++|||+|||.++++++|+++|+.||.|.+ |+++.+. +|.++|||||+|.+.++|.+|++.|||..|.|++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 478999999999999999999999999999 8999886 7899999999999999999999999999999999
Q ss_pred EEEEeccCchhh
Q 036905 229 LYVAIAQTKRER 240 (354)
Q Consensus 229 l~v~~a~~~~~~ 240 (354)
|+|.+++++..+
T Consensus 87 l~V~~a~~~~~~ 98 (116)
T 2lcw_A 87 IKVSFATRRADF 98 (116)
Confidence 999999887554
No 298
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=120.41 Aligned_cols=75 Identities=31% Similarity=0.521 Sum_probs=70.1
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcC--CCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQC--GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~--G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
.++|||+|||..+|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|+..|||..|.|++|+|.|++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4899999999999999999999999 999999875 5699999999999999999999999999999999998
Q ss_pred Cchh
Q 036905 236 TKRE 239 (354)
Q Consensus 236 ~~~~ 239 (354)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 299
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=123.87 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCC-----eEE
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG-----MEL 124 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g-----~~i 124 (354)
....++|||+|||+++|+++|+++|+.||.|.+|+|+.+ |||||+|.+.++|++||+.|||..|.| +.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 345789999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred Eeccccc
Q 036905 125 YAPSLRA 131 (354)
Q Consensus 125 ~~~~~~~ 131 (354)
.+.+...
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 9887665
No 300
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.2e-17 Score=126.49 Aligned_cols=78 Identities=12% Similarity=0.199 Sum_probs=70.6
Q ss_pred CeEEEcCC----CCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeec----HHH----HHHHHH--HhhhCc
Q 036905 54 FIPFTVNL----ASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYST----QES----ALNAIE--KLYAAT 118 (354)
Q Consensus 54 ~~lfV~nL----p~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~----~e~----A~~Ai~--~lng~~ 118 (354)
.+|||+|| |+++++.+|+++|+.||+|.+|+++.|+ ||+++|||||+|.+ .++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999 99999999999996 333 899988 789999
Q ss_pred cCCeEEEeccccc
Q 036905 119 VEGMELYAPSLRA 131 (354)
Q Consensus 119 i~g~~i~~~~~~~ 131 (354)
|.|+.|.|...+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999887655
No 301
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=1.3e-16 Score=131.20 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=71.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC--eeEEEEeccC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ--KPLYVAIAQT 236 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g--~~l~v~~a~~ 236 (354)
.+|||+||++.+|+++|+++|++||.|.+|.|..+. ++|||||+|++.++|.+|++.|||..|.| ++|+|.|+++
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 579999999999999999999999999999997653 57899999999999999999999999965 9999999987
Q ss_pred ch
Q 036905 237 KR 238 (354)
Q Consensus 237 ~~ 238 (354)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 74
No 302
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.7e-17 Score=122.40 Aligned_cols=77 Identities=29% Similarity=0.499 Sum_probs=69.8
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCC-eeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC-ceeCCeeEEEEecc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGI-ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG-ILFHQKPLYVAIAQ 235 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~-v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g-~~i~g~~l~v~~a~ 235 (354)
.++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..|.|++|+|.|++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 479999999999999999999999999 6666663 479999999999999999999999 99999999999998
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
++..+
T Consensus 82 ~~~~~ 86 (93)
T 2cqh_A 82 SKKLR 86 (93)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 77543
No 303
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=9.3e-17 Score=135.46 Aligned_cols=83 Identities=18% Similarity=0.379 Sum_probs=78.7
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||..+++++|+++|+.||.|.+|.|..+.+|.++|||||+|.+.++|.+|++.|||..|.|++|+|.||..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 34899999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred chh
Q 036905 237 KRE 239 (354)
Q Consensus 237 ~~~ 239 (354)
...
T Consensus 167 ~~~ 169 (177)
T 2f3j_A 167 QID 169 (177)
T ss_dssp GGG
T ss_pred CCC
Confidence 643
No 304
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=2.3e-17 Score=126.40 Aligned_cols=78 Identities=21% Similarity=0.413 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
...++|||+|||+++|+++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|++|++ ++..++|+.|.+.+..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34579999999999999999999999999999999999999999999999999999999998 8999999999855544
No 305
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.2e-16 Score=123.59 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=70.8
Q ss_pred ccCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 47 SAMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 47 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
.....+.++|||+|||+++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999997 789999999999999999999999999999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 98 ~~a~~ 102 (108)
T 2jvo_A 98 VYSKL 102 (108)
T ss_dssp ESCSC
T ss_pred EEecC
Confidence 88765
No 306
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.3e-17 Score=134.60 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
.....++|||+|||+++|+++|+++|+.|| |.+|+|++|++|+++|||||+|.+.++|++|| .+|+..|.++.|.+..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345568999999999999999999999999 77999999999999999999999999999999 6899999999988765
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 120 a~~ 122 (139)
T 2hgn_A 120 NST 122 (139)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 307
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=3.1e-17 Score=129.99 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=73.3
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCee--EEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIIS--SVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~--~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
..+|||+|||+++|+++|+++|+.| .|. +|+|+.++.|+++|||||+|++.++|.+|++. ++..|+||.|+|..+.
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECC
Confidence 4789999999999999999999999 576 99999998899999999999999999999984 7899999999999987
Q ss_pred Cch
Q 036905 236 TKR 238 (354)
Q Consensus 236 ~~~ 238 (354)
+++
T Consensus 120 ~~e 122 (126)
T 2hgm_A 120 QEE 122 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 308
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=121.61 Aligned_cols=79 Identities=15% Similarity=0.166 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
.....++|||+|||+++|+++|+++|+.||.|. ++++.+ +++|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 344578999999999999999999999999997 677654 6889999999999999999999999999999999887
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 91 a~~ 93 (97)
T 2e5j_A 91 ARQ 93 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 309
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=2e-16 Score=119.98 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=69.5
Q ss_pred cCCCCCCeEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 48 AMATPTFIPFTVNLAS-TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
....+.++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.|||..+.|+.|.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4455688999999998 99999999999999999999883 789999999999999999999999999999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+.+.
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 87654
No 310
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.3e-16 Score=118.67 Aligned_cols=74 Identities=23% Similarity=0.304 Sum_probs=69.7
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
++|||+|||.++++++|+++|++| .|.++++. .++|||||+|.+.++|.+|++.|||..+.|++|+|.++..+.
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 6 SGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 789999999999999999999999 99999985 478999999999999999999999999999999999997653
No 311
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=3.7e-17 Score=129.55 Aligned_cols=81 Identities=21% Similarity=0.159 Sum_probs=72.2
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCee--EEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQ--SSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
......++|||+|||+++|+++|+++|+.| .|. +|+|++|++|+++|||||+|.+.++|++||+ +++..|+|+.|.
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 344567899999999999999999999999 677 9999999899999999999999999999998 578999999988
Q ss_pred ecccc
Q 036905 126 APSLR 130 (354)
Q Consensus 126 ~~~~~ 130 (354)
+....
T Consensus 115 V~~a~ 119 (126)
T 2hgm_A 115 VFKSS 119 (126)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 65543
No 312
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=9.2e-17 Score=135.48 Aligned_cols=83 Identities=17% Similarity=0.314 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...+.++|||+|||+++++++|+++|+.||.|.+|+|..+.+|.++|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
+..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 654
No 313
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=3.8e-18 Score=133.96 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeE--------EEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccC
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQS--------SKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVE 120 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~ 120 (354)
..+.++|||+|||+++|+++|+++|+.||.|.+ |++..++ +|+++|||||+|.+.++|++|++.|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999999 9999997 8999999999999999999999999999999
Q ss_pred CeEEEeccccc
Q 036905 121 GMELYAPSLRA 131 (354)
Q Consensus 121 g~~i~~~~~~~ 131 (354)
|+.|.+.+...
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999888765
No 314
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=117.67 Aligned_cols=71 Identities=27% Similarity=0.404 Sum_probs=64.9
Q ss_pred eEEEeCCCCccCHHH----HHHHhhcC-CCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 036905 160 NLYVKNINDDVDEIE----LKQYFSQC-GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIA 234 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~----L~~~F~~~-G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a 234 (354)
.|||+|||+.+++++ |+++|++| |.|.+| +| |+|||.|.+.++|.+|++.|||..+.||+|+|.||
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 499999999999987 55899999 599998 23 89999999999999999999999999999999999
Q ss_pred cCchh
Q 036905 235 QTKRE 239 (354)
Q Consensus 235 ~~~~~ 239 (354)
+.+.+
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 98764
No 315
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=7e-17 Score=131.55 Aligned_cols=85 Identities=31% Similarity=0.457 Sum_probs=73.2
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEE------EEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSV------KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v------~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 230 (354)
..++|||+|||..+|+++|+++|+.||.|.++ .+....+|.++|||||+|.+.++|.+|+..|||..|.|++|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 44899999999999999999999999998774 122224678999999999999999999999999999999999
Q ss_pred EEeccCchhhh
Q 036905 231 VAIAQTKRERT 241 (354)
Q Consensus 231 v~~a~~~~~~~ 241 (354)
|.||+....+.
T Consensus 124 V~~a~~~~~~~ 134 (143)
T 3egn_A 124 VQFARSARPKQ 134 (143)
T ss_dssp EEECCCSCC--
T ss_pred EEECCCCCCcc
Confidence 99998765443
No 316
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=2.5e-16 Score=117.43 Aligned_cols=75 Identities=25% Similarity=0.427 Sum_probs=63.7
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCce--eCCeeEEEEecc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGIL--FHQKPLYVAIAQ 235 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~--i~g~~l~v~~a~ 235 (354)
..+|||+|||+++|+++|+++|++||.|.+|+|+.+ +||||||+|++.++|.+ |+|.. +.|++|.|.+|.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 489999999999999999999999999999999986 79999999999999983 56655 469999999999
Q ss_pred Cchhh
Q 036905 236 TKRER 240 (354)
Q Consensus 236 ~~~~~ 240 (354)
++..+
T Consensus 83 ~k~~~ 87 (89)
T 3d2w_A 83 PKHNK 87 (89)
T ss_dssp -----
T ss_pred CCCcC
Confidence 87653
No 317
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=9.6e-17 Score=124.88 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
..++|||+|||+++|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.|||..+.|+.|.+.|.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 457999999999999999999999999999998864 588999999999999999999999999999999888765
No 318
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-17 Score=121.74 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...+.++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567899999999999999999999999988765 34789999999999999999999999999999999999887
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 654
No 319
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.3e-16 Score=118.05 Aligned_cols=78 Identities=19% Similarity=0.365 Sum_probs=70.8
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhc--CCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKF--GDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
....+.++|||+|||+++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|++|++.|||..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344567899999999999999999999999 999998874 67999999999999999999999999999999
Q ss_pred ecccccc
Q 036905 126 APSLRAG 132 (354)
Q Consensus 126 ~~~~~~~ 132 (354)
+.+.+..
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 8887653
No 320
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=124.08 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=68.0
Q ss_pred CCCCCCeEEE--cCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCcc-----CC
Q 036905 49 MATPTFIPFT--VNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV-----EG 121 (354)
Q Consensus 49 ~~~~~~~lfV--~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i-----~g 121 (354)
...++++||| +||++++|+++|+++|++||.|.+|.+.. .+|||||+|.+.++|++|++.|||..+ .+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 4456889999 77999999999999999999999988763 379999999999999999999999987 57
Q ss_pred eEEEeccccc
Q 036905 122 MELYAPSLRA 131 (354)
Q Consensus 122 ~~i~~~~~~~ 131 (354)
+.|++.+...
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 7777766553
No 321
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=120.01 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=69.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCC-eeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhh-CccCCeEEEe
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGD-IQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYA-ATVEGMELYA 126 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng-~~i~g~~i~~ 126 (354)
.....++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..+.|+.|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 3456789999999999999999999999999 6666653 489999999999999999999999 9999999998
Q ss_pred ccccc
Q 036905 127 PSLRA 131 (354)
Q Consensus 127 ~~~~~ 131 (354)
.+...
T Consensus 78 ~~a~~ 82 (93)
T 2cqh_A 78 DYSVS 82 (93)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 88765
No 322
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=2.5e-16 Score=122.26 Aligned_cols=75 Identities=28% Similarity=0.388 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCC-CcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 50 ATPTFIPFTVNLAST-IDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
....++|||+|||++ +|+++|+++|++||.|.+|++ ++|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344689999999999 999999999999999999998 489999999999999999999999999999999888
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
No 323
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.66 E-value=5.9e-16 Score=118.90 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=72.7
Q ss_pred CCceEEEeCCCC-----ccCHHHHHHHhhcCCCeeEEEEeeCC--CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 036905 157 LDKNLYVKNIND-----DVDEIELKQYFSQCGIISSVKIMRTN--RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229 (354)
Q Consensus 157 ~~~~l~v~nl~~-----~~t~~~L~~~F~~~G~v~~v~i~~~~--~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 229 (354)
.+++|+|+|+.. +-++++|+++|++||.|.+|.|++++ ++.++|||||+|.+.++|.+|+..|||+.++||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 347999999963 23789999999999999999999986 36889999999999999999999999999999999
Q ss_pred EEEeccCch
Q 036905 230 YVAIAQTKR 238 (354)
Q Consensus 230 ~v~~a~~~~ 238 (354)
+|.|+....
T Consensus 87 ~v~~a~~~~ 95 (105)
T 2pe8_A 87 KACFYNLDK 95 (105)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCHHH
Confidence 999997643
No 324
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.7e-16 Score=117.88 Aligned_cols=76 Identities=26% Similarity=0.365 Sum_probs=69.9
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|+ ++|+++|+++|++||.|.+|.|. .++|||||+|.+.++|.+|+..|||..|.|++|+|.|+++
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 3479999996 89999999999999999999995 3589999999999999999999999999999999999987
Q ss_pred chh
Q 036905 237 KRE 239 (354)
Q Consensus 237 ~~~ 239 (354)
+..
T Consensus 87 ~~~ 89 (97)
T 1x5p_A 87 QPM 89 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 325
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=5.2e-16 Score=122.39 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=68.6
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCceeCC--eeEEEEecc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGF-GFVCFSNPDEANRAINTLNGILFHQ--KPLYVAIAQ 235 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~-afV~f~~~~~A~~Ai~~l~g~~i~g--~~l~v~~a~ 235 (354)
..|||+||++.+|+++|+++|++||.|.+|+|... .|| |||+|.+.++|.+|++.|||..|.| +.|+|.||+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 35789999999999999999999999999999763 276 9999999999999999999999987 699999998
Q ss_pred Cch
Q 036905 236 TKR 238 (354)
Q Consensus 236 ~~~ 238 (354)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 775
No 326
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.7e-16 Score=120.10 Aligned_cols=76 Identities=25% Similarity=0.345 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCC-CCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLAS-TIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
...+.++|||+|||+ ++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|+.|.+.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 345688999999998 99999999999999999999984 7899999999999999999999999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 79 ~a~~ 82 (96)
T 2kvi_A 79 VSSS 82 (96)
T ss_dssp EEEC
T ss_pred EcCc
Confidence 8765
No 327
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=2e-15 Score=136.83 Aligned_cols=82 Identities=29% Similarity=0.515 Sum_probs=75.3
Q ss_pred cCCceEEEeCCCCccCHHHHH----HHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 036905 156 ILDKNLYVKNINDDVDEIELK----QYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYV 231 (354)
Q Consensus 156 ~~~~~l~v~nl~~~~t~~~L~----~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v 231 (354)
...++|||+|||.++|+++|+ ++|+.||.|.+|++++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 345899999999999999977 8999999999999987 6778999999999999999999999999999999999
Q ss_pred EeccCchh
Q 036905 232 AIAQTKRE 239 (354)
Q Consensus 232 ~~a~~~~~ 239 (354)
.|++.+..
T Consensus 85 ~~a~~~~~ 92 (282)
T 3pgw_A 85 QYAKTDSD 92 (282)
T ss_pred EEeccCcc
Confidence 99977653
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=2.1e-16 Score=117.62 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
...++|||+|||+++|+++|+++|++| .|.+|++. +++|||||+|.+.++|++|++.|||..+.|+.|.+.+.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 356899999999999999999999999 99999884 679999999999999999999999999999999988876
Q ss_pred cc
Q 036905 131 AG 132 (354)
Q Consensus 131 ~~ 132 (354)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 329
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6.2e-16 Score=116.50 Aligned_cols=77 Identities=16% Similarity=0.243 Sum_probs=68.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
.....++|||+|||+++|+++|+++|+.||.|.+| +.+. +|+ ||||+|.+.++|++|++ |||..+.|+.|.+.
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 34566899999999999999999999999999987 5555 565 99999999999999999 99999999999987
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 78 ~a~~ 81 (94)
T 2e5g_A 78 PREQ 81 (94)
T ss_dssp CSCC
T ss_pred ECCc
Confidence 6654
No 330
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.6e-16 Score=114.19 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=66.2
Q ss_pred CCCCe-EEEcCCCCCCcHHH----HHHHHhhc-CCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEE
Q 036905 51 TPTFI-PFTVNLASTIDNWK----LHQIFSKF-GDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124 (354)
Q Consensus 51 ~~~~~-lfV~nLp~~~te~~----L~~~F~~~-G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i 124 (354)
.++.+ |||+|||+++++++ |+++|+.| |+|.+| ++ |+|||.|.+.++|++|++.|||..+.||.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 44555 99999999999988 66899999 599987 23 999999999999999999999999999999
Q ss_pred Eecccccccc
Q 036905 125 YAPSLRAGRI 134 (354)
Q Consensus 125 ~~~~~~~~~~ 134 (354)
.+.+.+..+.
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999887553
No 331
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=118.73 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=71.2
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEE-EEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSV-KIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v-~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+|||.++++++|+++|+.||.|.+| .++.++. .|.|||+|.+.++|.+|+..|||..|.|++|+|.++.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4799999999999999999999999999999 4887753 23499999999999999999999999999999999998
Q ss_pred ch
Q 036905 237 KR 238 (354)
Q Consensus 237 ~~ 238 (354)
++
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 332
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=128.90 Aligned_cols=84 Identities=20% Similarity=0.361 Sum_probs=73.6
Q ss_pred cCCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEE------EEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCC
Q 036905 48 AMATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSS------KVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG 121 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v------~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g 121 (354)
....++++|||+|||+++|+++|+++|+.||.|.+| .+....+|+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 345678999999999999999999999999999875 12222478999999999999999999999999999999
Q ss_pred eEEEeccccc
Q 036905 122 MELYAPSLRA 131 (354)
Q Consensus 122 ~~i~~~~~~~ 131 (354)
+.|.+.+...
T Consensus 120 ~~l~V~~a~~ 129 (143)
T 3egn_A 120 KPMVVQFARS 129 (143)
T ss_dssp EECEEEECCC
T ss_pred cEEEEEECCC
Confidence 9999888765
No 333
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=4.5e-16 Score=117.28 Aligned_cols=75 Identities=21% Similarity=0.410 Sum_probs=67.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
++|||+|||.++|+++|+++|+.||.|.+| +....+|. ||||+|.+.++|.+|+. |||..|.|+.|+|.++..+.
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 799999999999999999999999999988 33333544 99999999999999999 99999999999999887654
No 334
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=7.6e-16 Score=126.60 Aligned_cols=80 Identities=24% Similarity=0.220 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCC--eEEEec
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEG--MELYAP 127 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g--~~i~~~ 127 (354)
.....+|||+||++++|+++|+++|++||.|.+|+|..+ .++|||||+|.+.++|++|++.|||..|.| +.|.+.
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 344567999999999999999999999999999998754 357999999999999999999999999965 999988
Q ss_pred ccccc
Q 036905 128 SLRAG 132 (354)
Q Consensus 128 ~~~~~ 132 (354)
|.+..
T Consensus 120 ~Ak~~ 124 (164)
T 1sjr_A 120 FSKLT 124 (164)
T ss_dssp ECSSS
T ss_pred EecCC
Confidence 87764
No 335
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=122.59 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=66.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-C---CCceeEEEEEeecHHHHHHHHHHhhhCccCCeEE
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-D---GKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~---g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i 124 (354)
.....++|||+|||+++|+++|+++|++||.|. +.++.+. + |+++|||||+|.+.++|++||+.|++ ++|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEE
Confidence 345678999999999999999999999999999 8888877 5 79999999999999999999998843 677777
Q ss_pred Eecc
Q 036905 125 YAPS 128 (354)
Q Consensus 125 ~~~~ 128 (354)
.+..
T Consensus 81 ~~~~ 84 (114)
T 2dnl_A 81 LCVS 84 (114)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 6443
No 336
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=115.35 Aligned_cols=77 Identities=23% Similarity=0.277 Sum_probs=69.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...+.++|||+|| ++|+++|+++|++||.|.+|+|. +++|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456789999996 89999999999999999999984 5689999999999999999999999999999999888
Q ss_pred cccc
Q 036905 129 LRAG 132 (354)
Q Consensus 129 ~~~~ 132 (354)
....
T Consensus 84 a~~~ 87 (97)
T 1x5p_A 84 ARKQ 87 (97)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7653
No 337
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=6.2e-16 Score=133.64 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=72.1
Q ss_pred CceEEEeCCC-CccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 158 DKNLYVKNIN-DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 158 ~~~l~v~nl~-~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
.++|||+||+ +.+|+++|+++|+.||.|.+|+++++ ++|||||+|.+.++|.+|++.|||..|.|++|+|.+++.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 3799999999 89999999999999999999999986 478999999999999999999999999999999999975
Q ss_pred ch
Q 036905 237 KR 238 (354)
Q Consensus 237 ~~ 238 (354)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 338
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=2e-16 Score=123.92 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
..++|||+|||+++|+++|+++|++||.|.+|+|+.+ |||||+|.+.++|++||+.|||..|.|+.+.+.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 4689999999999999999999999999999999865 8999999999999999999999999998854433
No 339
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=3.8e-16 Score=122.27 Aligned_cols=73 Identities=18% Similarity=0.320 Sum_probs=66.5
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCee-----EEEE
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKP-----LYVA 232 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~-----l~v~ 232 (354)
.++|||+|||.++|+++|+++|+.||.|.+|.|+.+ |||||+|++.++|.+||+.|||..|.|+. |+|.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 379999999999999999999999999999999876 89999999999999999999999999998 6666
Q ss_pred eccC
Q 036905 233 IAQT 236 (354)
Q Consensus 233 ~a~~ 236 (354)
.+.+
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 6554
No 340
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=8.9e-16 Score=147.20 Aligned_cols=83 Identities=20% Similarity=0.372 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEec
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAP 127 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~ 127 (354)
...+.++|||+|||+++|+++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999997 99999999999999999999999999999999999988
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 178 ~a~~ 181 (437)
T 3pgw_S 178 VERG 181 (437)
T ss_pred EeCC
Confidence 8764
No 341
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=116.86 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEE-EEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSS-KVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
....++|||+|||+++|+++|+++|+.||.|.+| .++.++ ..|.|||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3457899999999999999999999999999999 477775 123399999999999999999999999999999887
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 89 a~~ 91 (96)
T 2e44_A 89 IPD 91 (96)
T ss_dssp CCC
T ss_pred cCc
Confidence 664
No 342
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.7e-15 Score=120.04 Aligned_cols=79 Identities=24% Similarity=0.263 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeE-EEEEeecHHHHHHHHHHhhhCccCC--eEEEec
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGY-GFVQYSTQESALNAIEKLYAATVEG--MELYAP 127 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~-aFV~F~~~e~A~~Ai~~lng~~i~g--~~i~~~ 127 (354)
.....|||+||++.+|+++|+++|++||.|.+|++..+ ++|+ |||+|.+.++|++|++.|||..|.| +.|++.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34457889999999999999999999999999998864 3677 9999999999999999999999988 888888
Q ss_pred cccccc
Q 036905 128 SLRAGR 133 (354)
Q Consensus 128 ~~~~~~ 133 (354)
|.+...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 887643
No 343
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=2.1e-15 Score=115.84 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCC-----CCcHHHHHHHHhhcCCeeEEEEEeCC--CCCceeEEEEEeecHHHHHHHHHHhhhCccCCe
Q 036905 50 ATPTFIPFTVNLAS-----TIDNWKLHQIFSKFGDIQSSKVVVSQ--DGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122 (354)
Q Consensus 50 ~~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~i~~v~v~~d~--~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~ 122 (354)
..++++|+|+||-. +-++++|++.|++||.|.+|+|.+++ +++++|||||+|.+.++|.+|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999962 23789999999999999999999986 368999999999999999999999999999999
Q ss_pred EEEeccccc
Q 036905 123 ELYAPSLRA 131 (354)
Q Consensus 123 ~i~~~~~~~ 131 (354)
.|.+.+...
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999887765
No 344
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=2.8e-15 Score=128.21 Aligned_cols=81 Identities=20% Similarity=0.356 Sum_probs=74.2
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|||.++|+++|+++|+.||.|.+|++.++.+|.++|||||+|++.++|.+|+..+ +..|+|++|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 348999999999999999999999999999999999999999999999999999999999865 4599999999999875
Q ss_pred ch
Q 036905 237 KR 238 (354)
Q Consensus 237 ~~ 238 (354)
-.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 345
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=8.1e-16 Score=113.98 Aligned_cols=71 Identities=13% Similarity=0.247 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhc----C-------CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCcc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKF----G-------DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i 119 (354)
.+.++|||+|||+++|+++|+++|+.| | .|.+|++..+ +|||||+|.+.++|++|+ .|||..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 456899999999999999999999999 8 8999998754 899999999999999999 8999999
Q ss_pred CCeEEEec
Q 036905 120 EGMELYAP 127 (354)
Q Consensus 120 ~g~~i~~~ 127 (354)
.|+.|.+.
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99998865
No 346
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=4.1e-15 Score=130.79 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=90.9
Q ss_pred cceeEEEecCchhhHHHHH-Hhccccc--cccccc---------------------------------------cCCCCC
Q 036905 16 LGTPFSLYVGDLDSTDLLR-LCSALIA--SIDVHS---------------------------------------AMATPT 53 (354)
Q Consensus 16 ~g~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~---------------------------------------~~~~~~ 53 (354)
.|++|+.|.+..+++.+++ ++...+. .+.+.. ....++
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 151 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCC
Confidence 7899999999999998886 4444332 111110 012336
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccC-CeEEEecccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE-GMELYAPSLR 130 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~-g~~i~~~~~~ 130 (354)
++|||+|||.++|+++|+++|+.|| .|.+|+++.+ ++|||||+|.+.++|.+|++.|||..+. |+.|.+.|.+
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 8999999999999999999999999 9999999753 3789999999999999999999999999 9999988765
No 347
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=1.5e-15 Score=113.23 Aligned_cols=74 Identities=14% Similarity=0.293 Sum_probs=61.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCc--cCCeEEEec
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT--VEGMELYAP 127 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~--i~g~~i~~~ 127 (354)
..+.++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++ +++.. +.|+.|.+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 456789999999999999999999999999999999875 79999999999999984 45555 458888876
Q ss_pred cccc
Q 036905 128 SLRA 131 (354)
Q Consensus 128 ~~~~ 131 (354)
+...
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 6543
No 348
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=1.6e-15 Score=119.76 Aligned_cols=77 Identities=26% Similarity=0.351 Sum_probs=70.1
Q ss_pred CCceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 036905 157 LDKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQT 236 (354)
Q Consensus 157 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~ 236 (354)
..++|||+|+ ++|+++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|+..|||..|.|++|+|.|+++
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 3489999996 69999999999999999999996 3589999999999999999999999999999999999988
Q ss_pred chhh
Q 036905 237 KRER 240 (354)
Q Consensus 237 ~~~~ 240 (354)
+...
T Consensus 111 ~~~~ 114 (121)
T 2bz2_A 111 QPML 114 (121)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 7544
No 349
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=2.4e-15 Score=111.38 Aligned_cols=70 Identities=30% Similarity=0.563 Sum_probs=66.0
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcC----C-------CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQC----G-------IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~----G-------~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g 226 (354)
.++|||+|||.++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..|.|
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~g 79 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQG 79 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEECC
Confidence 3799999999999999999999999 8 8999999875 799999999999999999 999999999
Q ss_pred eeEEEEe
Q 036905 227 KPLYVAI 233 (354)
Q Consensus 227 ~~l~v~~ 233 (354)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 350
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=128.28 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=90.9
Q ss_pred cceeEEEecCchhhHHHHH-Hhccccc--cccccc---------------------------------------cCCCCC
Q 036905 16 LGTPFSLYVGDLDSTDLLR-LCSALIA--SIDVHS---------------------------------------AMATPT 53 (354)
Q Consensus 16 ~g~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~---------------------------------------~~~~~~ 53 (354)
.|++|+.|.+..+++.+++ ++...+. .+.+.. ....++
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 120 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 120 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCc
Confidence 6899999999999998887 4444332 111100 011347
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccC-CeEEEecccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE-GMELYAPSLR 130 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~-g~~i~~~~~~ 130 (354)
++|||+|||.++|+++|+++|+.|| .|.+|+++.+ ++|||||+|.+.++|.+|++.|||..++ |+.|.+.|.+
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 8999999999999999999999999 9999999764 3789999999999999999999999999 9999887754
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.3e-16 Score=114.59 Aligned_cols=77 Identities=23% Similarity=0.412 Sum_probs=66.6
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCc
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTK 237 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~ 237 (354)
.++|||+|||.++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|+.. ...+.|++|+|.+++++
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 379999999999999999999999999999999876 689999999999999754321 34568999999999887
Q ss_pred hhh
Q 036905 238 RER 240 (354)
Q Consensus 238 ~~~ 240 (354)
..+
T Consensus 79 ~~~ 81 (88)
T 1wf0_A 79 HNS 81 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 352
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=119.09 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=68.4
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-C---CCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-R---GISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~---g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 233 (354)
.++|||+|||.++|+++|+++|++||.|. +.++.+. + |.++|||||+|.+.++|.+|++.|+ .++|+.+.+..
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~ 84 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVS 84 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence 37999999999999999999999999999 8877766 4 7899999999999999999999984 47888888876
Q ss_pred ccCch
Q 036905 234 AQTKR 238 (354)
Q Consensus 234 a~~~~ 238 (354)
+....
T Consensus 85 ~~~~~ 89 (114)
T 2dnl_A 85 SPTIK 89 (114)
T ss_dssp CSSSC
T ss_pred CCCcC
Confidence 65443
No 353
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=6.2e-15 Score=116.23 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=66.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeE-EEEEeecHHHHHHHHHHhhhCccCC--eEEEecccc
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGY-GFVQYSTQESALNAIEKLYAATVEG--MELYAPSLR 130 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~-aFV~F~~~e~A~~Ai~~lng~~i~g--~~i~~~~~~ 130 (354)
..|||+||++.+|+++|+++|++||.|.+|+|... .|| |||+|.+.++|++|++.|||..|.| +.|.+.+.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45689999999999999999999999999999753 386 9999999999999999999999987 588888876
Q ss_pred cc
Q 036905 131 AG 132 (354)
Q Consensus 131 ~~ 132 (354)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 354
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=3.3e-15 Score=127.71 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
.++|||+|||+++|+++|+++|+.||.|.+|++.++.+|.++|||||+|.+.++|++|+..+ +..+.|+.|.+.+...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 47999999999999999999999999999999999999999999999999999999999754 5689999999877554
No 355
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=1.4e-15 Score=116.61 Aligned_cols=72 Identities=17% Similarity=0.384 Sum_probs=63.6
Q ss_pred EeCCCCccCHHHHHHHh------------hcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 036905 163 VKNINDDVDEIELKQYF------------SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230 (354)
Q Consensus 163 v~nl~~~~t~~~L~~~F------------~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 230 (354)
+.||+..+++++|++.| ++||.|.+|.|+++.++.++|||||+|.+.++|.+|+..|||+.++||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566667776666555 999999999999988889999999999999999999999999999999999
Q ss_pred EEec
Q 036905 231 VAIA 234 (354)
Q Consensus 231 v~~a 234 (354)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=3.5e-15 Score=130.75 Aligned_cols=79 Identities=27% Similarity=0.370 Sum_probs=70.1
Q ss_pred CCceEEEeCCCCcc---------CHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCcee---
Q 036905 157 LDKNLYVKNINDDV---------DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILF--- 224 (354)
Q Consensus 157 ~~~~l~v~nl~~~~---------t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i--- 224 (354)
..++|||+||+..+ ++++|+++|++||.|.+|+|+. +||||||+|.+.++|+.|++.|+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 34899999999998 7999999999999999999996 489999999999999999999999999
Q ss_pred ---------CCeeEEEEeccCchhh
Q 036905 225 ---------HQKPLYVAIAQTKRER 240 (354)
Q Consensus 225 ---------~g~~l~v~~a~~~~~~ 240 (354)
.|+.|.|.||+.+...
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC-----
T ss_pred ccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-15 Score=112.75 Aligned_cols=75 Identities=13% Similarity=0.278 Sum_probs=63.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecccc
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLR 130 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~ 130 (354)
.++++|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++|+.. ...+.++.|.+.+..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 45789999999999999999999999999999999865 689999999999999865432 344689999877765
Q ss_pred c
Q 036905 131 A 131 (354)
Q Consensus 131 ~ 131 (354)
.
T Consensus 77 ~ 77 (88)
T 1wf0_A 77 P 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=6.3e-15 Score=113.19 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=70.9
Q ss_pred CceEEEeCC--CCccC--------HHHHHHHhhcCCCeeEEEEeeCCCC---CeeeEEEEEeCCHHHHHHHHHHhCCcee
Q 036905 158 DKNLYVKNI--NDDVD--------EIELKQYFSQCGIISSVKIMRTNRG---ISKGFGFVCFSNPDEANRAINTLNGILF 224 (354)
Q Consensus 158 ~~~l~v~nl--~~~~t--------~~~L~~~F~~~G~v~~v~i~~~~~g---~~kg~afV~f~~~~~A~~Ai~~l~g~~i 224 (354)
++.|.++|+ +..+. +++|++.|++||.|.+|+|+++..+ .++|+|||+|++.++|.+|+..|||+.+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 478899998 33333 3789999999999999999988743 5799999999999999999999999999
Q ss_pred CCeeEEEEeccCchh
Q 036905 225 HQKPLYVAIAQTKRE 239 (354)
Q Consensus 225 ~g~~l~v~~a~~~~~ 239 (354)
+||.|+|.|+....-
T Consensus 85 ~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 85 ANRVVVTKYCDPDSY 99 (105)
T ss_dssp TTEECEEEEECHHHH
T ss_pred CCCEEEEEEeCHHHH
Confidence 999999999876543
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=6.2e-15 Score=116.32 Aligned_cols=76 Identities=24% Similarity=0.285 Sum_probs=69.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEecc
Q 036905 49 MATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPS 128 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~ 128 (354)
...+.++|||+|| ++|+++|+++|+.||.|.+|++. .++|||||+|.+.++|++|++.|||..+.|+.|.+.+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456789999996 69999999999999999999985 5689999999999999999999999999999999888
Q ss_pred ccc
Q 036905 129 LRA 131 (354)
Q Consensus 129 ~~~ 131 (354)
...
T Consensus 108 a~~ 110 (121)
T 2bz2_A 108 ARK 110 (121)
T ss_dssp CCS
T ss_pred eCC
Confidence 765
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=111.89 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=68.9
Q ss_pred CCceEEEeCCCCcc-----------CHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC
Q 036905 157 LDKNLYVKNINDDV-----------DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH 225 (354)
Q Consensus 157 ~~~~l~v~nl~~~~-----------t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~ 225 (354)
.+++|+|+||.... ++++|+++|++||.|.+|.| .+.. ++|||||+|.+.++|.+|+..|||..|.
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~--~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH--PDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC--TTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC--CCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34899999994432 25899999999999999966 4443 7999999999999999999999999999
Q ss_pred CeeEEEEeccCchh
Q 036905 226 QKPLYVAIAQTKRE 239 (354)
Q Consensus 226 g~~l~v~~a~~~~~ 239 (354)
|++|+|.|+.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987643
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.53 E-value=3.2e-14 Score=111.37 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=71.5
Q ss_pred CCceEEEeCCCC--cc---CHHHHHHHhhcCCCeeEEEEeeCCC-----CCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 036905 157 LDKNLYVKNIND--DV---DEIELKQYFSQCGIISSVKIMRTNR-----GISKGFGFVCFSNPDEANRAINTLNGILFHQ 226 (354)
Q Consensus 157 ~~~~l~v~nl~~--~~---t~~~L~~~F~~~G~v~~v~i~~~~~-----g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g 226 (354)
.+++|+|+|+-. ++ .+++|++.|++||.|.+|+|+++.. +.++||+||+|++.++|.+|+..|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 458999999842 22 3689999999999999999998753 5688999999999999999999999999999
Q ss_pred eeEEEEeccCch
Q 036905 227 KPLYVAIAQTKR 238 (354)
Q Consensus 227 ~~l~v~~a~~~~ 238 (354)
|.|+|.|+....
T Consensus 99 R~i~v~~~~~~~ 110 (118)
T 3ue2_A 99 RKVVAEVYDQER 110 (118)
T ss_dssp EECEEEEECHHH
T ss_pred cEEEEEEcChHh
Confidence 999999987643
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=3.7e-15 Score=114.28 Aligned_cols=72 Identities=18% Similarity=0.303 Sum_probs=64.1
Q ss_pred EcCCCCCCcHHHHHHHH------------hhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 58 TVNLASTIDNWKLHQIF------------SKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 58 V~nLp~~~te~~L~~~F------------~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
+.||++++++++|++.| ++||.|.+|+|.++.+++++|||||+|.+.++|++|++.|||..+.||.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777778887777666 999999999999988889999999999999999999999999999999998
Q ss_pred eccc
Q 036905 126 APSL 129 (354)
Q Consensus 126 ~~~~ 129 (354)
+.+.
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7764
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=1.8e-14 Score=126.22 Aligned_cols=78 Identities=24% Similarity=0.330 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCC---------cHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCcc-
Q 036905 50 ATPTFIPFTVNLASTI---------DNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV- 119 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i- 119 (354)
....++|||+||+.++ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 4567899999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred -----------CCeEEEecccccc
Q 036905 120 -----------EGMELYAPSLRAG 132 (354)
Q Consensus 120 -----------~g~~i~~~~~~~~ 132 (354)
.|+.|.|.|...+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccccCCCCEEEEEEccCC
Confidence 8999999988753
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=2.6e-14 Score=109.69 Aligned_cols=81 Identities=16% Similarity=0.160 Sum_probs=70.9
Q ss_pred CCCCeEEEcCC--CCCCc--------HHHHHHHHhhcCCeeEEEEEeCCC---CCceeEEEEEeecHHHHHHHHHHhhhC
Q 036905 51 TPTFIPFTVNL--ASTID--------NWKLHQIFSKFGDIQSSKVVVSQD---GKSKGYGFVQYSTQESALNAIEKLYAA 117 (354)
Q Consensus 51 ~~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~i~~v~v~~d~~---g~skg~aFV~F~~~e~A~~Ai~~lng~ 117 (354)
.+++.|.|+|+ |.++. +++|++.|++||.|.+|+|.++.. ++++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57889999998 33443 379999999999999999998873 368999999999999999999999999
Q ss_pred ccCCeEEEeccccc
Q 036905 118 TVEGMELYAPSLRA 131 (354)
Q Consensus 118 ~i~g~~i~~~~~~~ 131 (354)
.+.||.|.+.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999887654
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=107.55 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=68.6
Q ss_pred CCCCCCeEEEcCCCCCCc-----------HHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhC
Q 036905 49 MATPTFIPFTVNLASTID-----------NWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA 117 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~ 117 (354)
...++++|+|+||-...+ +++|+++|++||.|.+|.| .+. .++|||||+|.+.++|++|++.|||.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 456789999999944332 6899999999999999965 554 47999999999999999999999999
Q ss_pred ccCCeEEEeccccc
Q 036905 118 TVEGMELYAPSLRA 131 (354)
Q Consensus 118 ~i~g~~i~~~~~~~ 131 (354)
.+.|+.|.+.+...
T Consensus 88 ~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 88 WFGGRQITAQAWDG 101 (112)
T ss_dssp EETTEECEEEECCS
T ss_pred EECCcEEEEEEeCC
Confidence 99999999887654
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.3e-13 Score=107.82 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCC--C---CcHHHHHHHHhhcCCeeEEEEEeCC-----CCCceeEEEEEeecHHHHHHHHHHhhhCccCC
Q 036905 52 PTFIPFTVNLAS--T---IDNWKLHQIFSKFGDIQSSKVVVSQ-----DGKSKGYGFVQYSTQESALNAIEKLYAATVEG 121 (354)
Q Consensus 52 ~~~~lfV~nLp~--~---~te~~L~~~F~~~G~i~~v~v~~d~-----~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g 121 (354)
++++|+|+|+-. + --++||++.|++||.|.+|+|.++. +++++|++||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999932 2 2368999999999999999999986 25688999999999999999999999999999
Q ss_pred eEEEeccccc
Q 036905 122 MELYAPSLRA 131 (354)
Q Consensus 122 ~~i~~~~~~~ 131 (354)
|.|.+.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999887654
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-13 Score=102.35 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=58.9
Q ss_pred CccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCchh
Q 036905 168 DDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKRE 239 (354)
Q Consensus 168 ~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~~ 239 (354)
..+++++|+++|++||.|.+|.|+. .++|||||+|++.++|.+|++.+++ +.|++|+|.|++.+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 4689999999999999999999983 5799999999999999999998655 6799999999987653
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.42 E-value=5.3e-13 Score=103.71 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=67.5
Q ss_pred CceEEEeCCCCcc----------CHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 036905 158 DKNLYVKNINDDV----------DEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQK 227 (354)
Q Consensus 158 ~~~l~v~nl~~~~----------t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~ 227 (354)
+++|.++|+=..- .+++|++.|++||.|.+|.|.++. ++||+||+|++.++|.+|+..|||+.++||
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3678888883321 236899999999999999997764 489999999999999999999999999999
Q ss_pred eEEEEeccCchhh
Q 036905 228 PLYVAIAQTKRER 240 (354)
Q Consensus 228 ~l~v~~a~~~~~~ 240 (354)
.|+|.|+....-.
T Consensus 84 ~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 84 MITAAYVPLPTYH 96 (114)
T ss_dssp ECEEEEECHHHHH
T ss_pred EEEEEEEcHHHHH
Confidence 9999999765443
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.40 E-value=4.9e-13 Score=123.28 Aligned_cols=76 Identities=24% Similarity=0.463 Sum_probs=66.5
Q ss_pred cCCceEEEeC--CCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeC---Ce--e
Q 036905 156 ILDKNLYVKN--INDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFH---QK--P 228 (354)
Q Consensus 156 ~~~~~l~v~n--l~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~---g~--~ 228 (354)
.++.+|||+| |+..+|+++|+++|++||+|.+|.+.. +||||||+|++.++|++|++.|||+.+- |+ .
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 3458999999 578999999999999999999988764 4799999999999999999999999872 44 7
Q ss_pred EEEEeccC
Q 036905 229 LYVAIAQT 236 (354)
Q Consensus 229 l~v~~a~~ 236 (354)
|+|.|+..
T Consensus 91 ly~~~~~~ 98 (345)
T 3tht_A 91 LYLNFVEK 98 (345)
T ss_dssp CEEEECSS
T ss_pred EEEEEeec
Confidence 89999853
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=5.6e-13 Score=122.89 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=64.8
Q ss_pred CCCCCCeEEEcC--CCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccC---Ce-
Q 036905 49 MATPTFIPFTVN--LASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVE---GM- 122 (354)
Q Consensus 49 ~~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~---g~- 122 (354)
...++.+|||+| |+.++|+++|+++|++||+|.+|.+.. +||||||+|++.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 357788999999 578999999999999999999887643 5899999999999999999999999872 45
Q ss_pred -EEEecccc
Q 036905 123 -ELYAPSLR 130 (354)
Q Consensus 123 -~i~~~~~~ 130 (354)
.+++.+..
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 34555553
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.2e-12 Score=96.17 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=61.2
Q ss_pred CCeEEEcCCC-------CCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE
Q 036905 53 TFIPFTVNLA-------STIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY 125 (354)
Q Consensus 53 ~~~lfV~nLp-------~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~ 125 (354)
..+|.|.-.. .++|+++|+++|++||.|.+|.|+ ++++|||||+|.+.++|++|++.+++ +.++.|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 4566666543 458999999999999999999998 47899999999999999999997544 5788899
Q ss_pred eccccc
Q 036905 126 APSLRA 131 (354)
Q Consensus 126 ~~~~~~ 131 (354)
+.|...
T Consensus 84 V~~a~~ 89 (100)
T 2d9o_A 84 ISWLEG 89 (100)
T ss_dssp EECSSC
T ss_pred EEEccC
Confidence 888765
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=3.2e-12 Score=99.26 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCCCC----------cHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCcc
Q 036905 50 ATPTFIPFTVNLASTI----------DNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATV 119 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~----------te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i 119 (354)
..+++.|.++|+=..- -++||++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||..+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3567899999983221 236899999999999999886552 589999999999999999999999999
Q ss_pred CCeEEEeccccc
Q 036905 120 EGMELYAPSLRA 131 (354)
Q Consensus 120 ~g~~i~~~~~~~ 131 (354)
+||.|.+.+...
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999888765
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=5.6e-11 Score=86.73 Aligned_cols=71 Identities=18% Similarity=0.283 Sum_probs=60.6
Q ss_pred ceEEEeCCC----CccCH----HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 036905 159 KNLYVKNIN----DDVDE----IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLY 230 (354)
Q Consensus 159 ~~l~v~nl~----~~~t~----~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~ 230 (354)
.||+|...+ .+..+ .+|.+.|++||+|..+++..+. +||+|.+.++|.+|++ |||..+.||.|+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 567776655 23333 5789999999999999999873 8999999999999998 999999999999
Q ss_pred EEeccCc
Q 036905 231 VAIAQTK 237 (354)
Q Consensus 231 v~~a~~~ 237 (354)
|+++++.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9999864
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.1e-10 Score=90.85 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=72.2
Q ss_pred CceEEEeCCCCc-cCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCC-HHHHHHHHHHhC--CceeCCeeEEEEe
Q 036905 158 DKNLYVKNINDD-VDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSN-PDEANRAINTLN--GILFHQKPLYVAI 233 (354)
Q Consensus 158 ~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~-~~~A~~Ai~~l~--g~~i~g~~l~v~~ 233 (354)
.+.|||+||+.. +++++|+++|+.||.|.+|.+..+.. .|||+|.+ .++|..|+..|| +..|.|..+++..
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 378999999999 99999999999999999999998854 69999999 899999999994 7889999999998
Q ss_pred ccCchhhhHH
Q 036905 234 AQTKRERTSY 243 (354)
Q Consensus 234 a~~~~~~~~~ 243 (354)
..-.++....
T Consensus 93 L~GeeE~~yw 102 (121)
T 1owx_A 93 LEGEVEKEAL 102 (121)
T ss_dssp CCHHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 8877665543
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=4.9e-10 Score=81.75 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCC----C-CcH---HHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCe
Q 036905 51 TPTFIPFTVNLAS----T-IDN---WKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGM 122 (354)
Q Consensus 51 ~~~~~lfV~nLp~----~-~te---~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~ 122 (354)
.+..||+|.-++. + .++ .+|.+.|+.||+|.+++++.|. +||+|.+.++|.+||+ |||..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 4556888887762 2 342 6799999999999999999874 9999999999999998 999999999
Q ss_pred EEEeccccccc
Q 036905 123 ELYAPSLRAGR 133 (354)
Q Consensus 123 ~i~~~~~~~~~ 133 (354)
.|++...+.+.
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99988776644
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.04 E-value=3.9e-10 Score=98.29 Aligned_cols=69 Identities=25% Similarity=0.262 Sum_probs=62.1
Q ss_pred cCHHHHHHHhhcCCCeeEEEEeeCC-----CCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCch
Q 036905 170 VDEIELKQYFSQCGIISSVKIMRTN-----RGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQTKR 238 (354)
Q Consensus 170 ~t~~~L~~~F~~~G~v~~v~i~~~~-----~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~~~~ 238 (354)
-.+++|++.|++||.|.++.|.++. ++.++|++||+|.+.++|.+|+..|||+.++||.|.|.|....+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 3568899999999999999998654 34899999999999999999999999999999999999987554
No 377
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.02 E-value=3.4e-11 Score=85.98 Aligned_cols=35 Identities=37% Similarity=0.617 Sum_probs=32.7
Q ss_pred ccchhhhhcCCHHHHHHhhhcccccccccccCCCC
Q 036905 318 AANNSMLAVASPDERKDILGQGLYPLVKKLKVNFD 352 (354)
Q Consensus 318 ~~~~~~l~~~~~~~q~~~lg~~l~~~v~~~~~~~~ 352 (354)
..+++.|++++|++||+||||+|||+|++++|++|
T Consensus 8 ~~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~A 42 (85)
T 2dyd_A 8 GALASALANSPPETQRMMLGENLYPLVDQLEHDQA 42 (85)
T ss_dssp TTSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHH
T ss_pred hhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCcccc
Confidence 45789999999999999999999999999999986
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=7e-10 Score=86.25 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=66.2
Q ss_pred CCCCCCeEEEcCCCCC-CcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeec-HHHHHHHHHHhh--hCccCCeEE
Q 036905 49 MATPTFIPFTVNLAST-IDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYST-QESALNAIEKLY--AATVEGMEL 124 (354)
Q Consensus 49 ~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~-~e~A~~Ai~~ln--g~~i~g~~i 124 (354)
.-.+.+.|+|+||+++ +++++|+++|+.||+|..|.+..+.+ .|||+|.+ .++|..|++.|| +..|.|..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 3456679999999999 99999999999999999999987752 59999999 899999999995 677888777
Q ss_pred Eeccccc
Q 036905 125 YAPSLRA 131 (354)
Q Consensus 125 ~~~~~~~ 131 (354)
.+..+..
T Consensus 89 ~~evL~G 95 (121)
T 1owx_A 89 TWEVLEG 95 (121)
T ss_dssp EEEECCH
T ss_pred EEEECCC
Confidence 7654443
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=5.8e-10 Score=81.72 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=59.7
Q ss_pred ceEEEeCCCCc-----cCH----HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 036905 159 KNLYVKNINDD-----VDE----IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPL 229 (354)
Q Consensus 159 ~~l~v~nl~~~-----~t~----~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l 229 (354)
.||+|..++.. +.+ .+|.+.|+.||+|..+++..+. +||+|.+.++|.+||+ |||..+.||.|
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 68888887632 222 5688999999999999999882 9999999999999998 99999999999
Q ss_pred EEEecc
Q 036905 230 YVAIAQ 235 (354)
Q Consensus 230 ~v~~a~ 235 (354)
+|++..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 999864
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=2.6e-09 Score=78.24 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=62.5
Q ss_pred cCCCCCCeEEEcCCCCC------CcH---HHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCc
Q 036905 48 AMATPTFIPFTVNLAST------IDN---WKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAAT 118 (354)
Q Consensus 48 ~~~~~~~~lfV~nLp~~------~te---~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~ 118 (354)
....+..||+|.-++.+ .++ .+|.+.|+.||+|..++++.|+ +||+|.+.++|.+||+ |||..
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSE
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCee
Confidence 34456779999988743 332 5699999999999999999874 9999999999999998 99999
Q ss_pred cCCeEEEeccc
Q 036905 119 VEGMELYAPSL 129 (354)
Q Consensus 119 i~g~~i~~~~~ 129 (354)
++||.|.+...
T Consensus 82 v~Gr~L~V~~k 92 (95)
T 1ufw_A 82 VKGRAVKISGP 92 (95)
T ss_dssp ETTEEEEEECC
T ss_pred eCCeEEEEecc
Confidence 99999997654
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.89 E-value=3e-09 Score=92.60 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=60.7
Q ss_pred CCcHHHHHHHHhhcCCeeEEEEEeCC-----CCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEeccccc
Q 036905 64 TIDNWKLHQIFSKFGDIQSSKVVVSQ-----DGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYAPSLRA 131 (354)
Q Consensus 64 ~~te~~L~~~F~~~G~i~~v~v~~d~-----~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~~~~~~ 131 (354)
+-.+++|++.|++||.|.+++|.++. +++++|++||+|.+.++|.+|++.|||..+.||.|.+.+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34668999999999999999998654 458999999999999999999999999999999999877654
No 382
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=98.86 E-value=1.5e-10 Score=82.62 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=32.6
Q ss_pred ccchhhhhcCCHHHHHHhhhcccccccccccCCCC
Q 036905 318 AANNSMLAVASPDERKDILGQGLYPLVKKLKVNFD 352 (354)
Q Consensus 318 ~~~~~~l~~~~~~~q~~~lg~~l~~~v~~~~~~~~ 352 (354)
+.+++.|++++|++||+||||+|||+|++++|++|
T Consensus 9 ~l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~A 43 (85)
T 1nmr_A 9 QNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAA 43 (85)
T ss_dssp CTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccCHHHHHcCChHHHHHHHHHHHHHHHHHhCcccc
Confidence 46788999999999999999999999999999976
No 383
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=98.86 E-value=2.2e-10 Score=83.10 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=33.6
Q ss_pred ccccchhhhhcCCHHHHHHhhhccccccccc--ccCCCC
Q 036905 316 RAAANNSMLAVASPDERKDILGQGLYPLVKK--LKVNFD 352 (354)
Q Consensus 316 ~~~~~~~~l~~~~~~~q~~~lg~~l~~~v~~--~~~~~~ 352 (354)
+.+.+++.|++++|++||+||||+|||+|++ ++|++|
T Consensus 4 ~~p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelA 42 (92)
T 1ifw_A 4 GSPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAA 42 (92)
T ss_dssp SCSSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHH
T ss_pred CCccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 3457788999999999999999999999999 999876
No 384
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=98.84 E-value=4.3e-10 Score=81.11 Aligned_cols=36 Identities=36% Similarity=0.697 Sum_probs=33.1
Q ss_pred cccchhhhhcCCHHHHHHhhhcccccccccccCCCC
Q 036905 317 AAANNSMLAVASPDERKDILGQGLYPLVKKLKVNFD 352 (354)
Q Consensus 317 ~~~~~~~l~~~~~~~q~~~lg~~l~~~v~~~~~~~~ 352 (354)
...+++.||+++|++||+||||+|||+|++++|++|
T Consensus 5 ~~l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A 40 (88)
T 3kuj_A 5 SPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLA 40 (88)
T ss_dssp -CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTH
T ss_pred ccchHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCcc
Confidence 356889999999999999999999999999999987
No 385
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=98.83 E-value=3.8e-09 Score=83.14 Aligned_cols=35 Identities=37% Similarity=0.708 Sum_probs=33.2
Q ss_pred cchhhhhcCCHHHHHHhhhcccccccccccCCCCC
Q 036905 319 ANNSMLAVASPDERKDILGQGLYPLVKKLKVNFDS 353 (354)
Q Consensus 319 ~~~~~l~~~~~~~q~~~lg~~l~~~v~~~~~~~~~ 353 (354)
.+++.|++++|++||+||||+|||||++++|++|-
T Consensus 53 l~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~ 87 (144)
T 1g9l_A 53 LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAG 87 (144)
T ss_dssp CSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCS
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccc
Confidence 58899999999999999999999999999999984
No 386
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=1.3e-07 Score=70.64 Aligned_cols=72 Identities=15% Similarity=0.208 Sum_probs=66.7
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcC-----CCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQC-----GIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~-----G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 232 (354)
.++|-+-|||+.+++..|+.+.+++ |.++.+.+..|.. -|+|+|.+...|.+|.-.|+|..|.||+|+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-----EEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-----ceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 3789999999999999999999999 9999999999854 59999999999999999999999999999998
Q ss_pred ec
Q 036905 233 IA 234 (354)
Q Consensus 233 ~a 234 (354)
-.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=1e-06 Score=65.75 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhc-----CCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEE
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKF-----GDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~-----G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i 124 (354)
.+..++|-+-|||..+++..|+.+.+.+ |.|..+.++.|- +=|+|+|.+..+|-+|.-.|+|..|.|++|
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 3457899999999999999999999999 999999998874 459999999999999999999999999999
Q ss_pred Eec
Q 036905 125 YAP 127 (354)
Q Consensus 125 ~~~ 127 (354)
.+-
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 854
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=1.3e-05 Score=59.75 Aligned_cols=75 Identities=25% Similarity=0.243 Sum_probs=64.6
Q ss_pred CceEEEeCCCCcc-CH----HHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 036905 158 DKNLYVKNINDDV-DE----IELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVA 232 (354)
Q Consensus 158 ~~~l~v~nl~~~~-t~----~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~ 232 (354)
.++|+|.||+.++ .. +.++++|..|+.+......+.-. -..|.|.+.++|.+|-..||+..+.|+.++|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-----RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-----EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-----EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4789999998876 22 57789999999999888877632 47999999999999999999999999999999
Q ss_pred eccCc
Q 036905 233 IAQTK 237 (354)
Q Consensus 233 ~a~~~ 237 (354)
|+++.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99843
No 389
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=97.96 E-value=5.2e-07 Score=60.37 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=20.1
Q ss_pred HHHhhhcccccccccccCCCC
Q 036905 332 RKDILGQGLYPLVKKLKVNFD 352 (354)
Q Consensus 332 q~~~lg~~l~~~v~~~~~~~~ 352 (354)
||+||||+|||+|++++|++|
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A 21 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFA 21 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGH
T ss_pred CHHHHHHHHHHHHHHhCcccc
Confidence 799999999999999999987
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=5.3e-05 Score=56.11 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=55.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhh-c----CCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEE
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSK-F----GDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMEL 124 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~----G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i 124 (354)
.....+|.|.|||.+++++.|.-+|+. - |+|.+++... +-|+|+|.+.+.|++.+++ ..+.+.+..|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 345679999999999999999999986 2 5788877652 4699999999999999974 3567777777
Q ss_pred Ee
Q 036905 125 YA 126 (354)
Q Consensus 125 ~~ 126 (354)
.+
T Consensus 77 sV 78 (104)
T 2dhx_A 77 SL 78 (104)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.63 E-value=0.00021 Score=52.24 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=56.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-C-C-CceeEEEEEeecHHHHHHHHHHhhhCccCC
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-D-G-KSKGYGFVQYSTQESALNAIEKLYAATVEG 121 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~-g-~skg~aFV~F~~~e~A~~Ai~~lng~~i~g 121 (354)
++|-|++||+.+||+++.+.+.....+.....+... + + ..-.-|||.|.+.+++....+.++|+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 579999999999999999999999887776666654 2 2 234679999999999999999999987643
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.61 E-value=0.00031 Score=51.36 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=47.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhh
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY 115 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 115 (354)
..+.++| ++|++....||.++|+.||.|. |+.+-|- .|||.|.+.+.|..|+..++
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 3456667 9999999999999999999654 6666652 79999999999999998765
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.0004 Score=51.44 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=60.2
Q ss_pred ceEEEeCCCCccCHHHHHHHhhc-----CCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQ-----CGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAI 233 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~-----~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~ 233 (354)
++|.|.|||..++++.|.-+|+. -|.|.+++... +-|+|+|.+.+.|++.++. ..+.|.+.+|.|.-
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence 78999999999999999999986 25888888765 3599999999999999873 46788899999976
Q ss_pred ccCch
Q 036905 234 AQTKR 238 (354)
Q Consensus 234 a~~~~ 238 (354)
.-++.
T Consensus 81 ~~~~~ 85 (104)
T 2dhx_A 81 APPRA 85 (104)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 55443
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.55 E-value=0.00086 Score=48.94 Aligned_cols=77 Identities=10% Similarity=0.199 Sum_probs=61.1
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC-C-C-CeeeEEEEEeCCHHHHHHHHHHhCCceeCC-----eeEE
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN-R-G-ISKGFGFVCFSNPDEANRAINTLNGILFHQ-----KPLY 230 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~-~-g-~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g-----~~l~ 230 (354)
++|.|++||..+|++++.+.++....+.....+... + + ..-.-|+|.|++.+++....+.++|..+.+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 478999999999999999999999888777776654 1 1 123569999999999999999999998853 2345
Q ss_pred EEecc
Q 036905 231 VAIAQ 235 (354)
Q Consensus 231 v~~a~ 235 (354)
|.+|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 395
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.47 E-value=0.00022 Score=53.08 Aligned_cols=74 Identities=14% Similarity=0.045 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCCCC-c----HHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEEe
Q 036905 52 PTFIPFTVNLASTI-D----NWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELYA 126 (354)
Q Consensus 52 ~~~~lfV~nLp~~~-t----e~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~~ 126 (354)
-..+|+|.||+.++ + .+.++++|..|+++.+....+. -.-..|.|.+.++|.+|...|++..+.|+.+++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 34689999998865 2 2578999999999988877743 345789999999999999999999999999998
Q ss_pred cccc
Q 036905 127 PSLR 130 (354)
Q Consensus 127 ~~~~ 130 (354)
.+..
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 7765
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.20 E-value=0.0011 Score=50.68 Aligned_cols=73 Identities=8% Similarity=0.091 Sum_probs=58.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhCccCCeEEE-ecc
Q 036905 50 ATPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAATVEGMELY-APS 128 (354)
Q Consensus 50 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~~i~g~~i~-~~~ 128 (354)
....+.|.|-+.|++. ...|.+.|++||+|++... . ....+-.|.|.+..+|++||. .||+.+.+..+. +..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~---~--~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM---S--NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE---C--SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc---C--CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 4446789999999875 6678899999999998765 2 124689999999999999997 599999875555 554
Q ss_pred c
Q 036905 129 L 129 (354)
Q Consensus 129 ~ 129 (354)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 397
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.12 E-value=0.0012 Score=48.31 Aligned_cols=53 Identities=28% Similarity=0.405 Sum_probs=45.8
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l 219 (354)
+.++| +.|.++...||.++|+.||.| .|+.+.|. .|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhc
Confidence 66777 999999999999999999954 47777763 5999999999999999875
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.96 E-value=0.0015 Score=47.91 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=45.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhh
Q 036905 54 FIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY 115 (354)
Q Consensus 54 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 115 (354)
+.++| ++|++....||.++|+.||.| .|+.+-| ..|||.|.+.+.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999954 4666665 269999999999999998764
No 399
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.90 E-value=0.0076 Score=46.00 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=58.9
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC-eeEEEEeccCc
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ-KPLYVAIAQTK 237 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g-~~l~v~~a~~~ 237 (354)
.-|.|-+.+... ...|.+.|++||+|.+...... ..+-.|.|++..+|++||.+ ||..|+| -.|-|.....+
T Consensus 25 ~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 25 TWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp GEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCH
T ss_pred CEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCH
Confidence 677888888774 6678889999999998887321 34899999999999999995 9999985 66777776544
Q ss_pred hh
Q 036905 238 RE 239 (354)
Q Consensus 238 ~~ 239 (354)
..
T Consensus 98 ~v 99 (119)
T 1wwh_A 98 NV 99 (119)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 400
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.69 E-value=0.0023 Score=46.95 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=45.9
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 220 (354)
..++| +.|.++...||.++|+.||. ..|+.+.|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999994 557777763 59999999999999999764
No 401
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.50 E-value=0.0072 Score=44.33 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=55.7
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCC--CC-CeeeEEEEEeCCHHHHHHHHHHhCCceeCC-----eeEE
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTN--RG-ISKGFGFVCFSNPDEANRAINTLNGILFHQ-----KPLY 230 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~--~g-~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g-----~~l~ 230 (354)
.+|.|+.||..+|++++.+.++..-.+.....+... .+ ..-.-|+|.|++.++.....+..+|..+-+ -+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 579999999999999998888776554333332222 11 112359999999999999999999998754 3455
Q ss_pred EEecc
Q 036905 231 VAIAQ 235 (354)
Q Consensus 231 v~~a~ 235 (354)
|+||-
T Consensus 90 VE~AP 94 (97)
T 2l08_A 90 VEFAP 94 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 66663
No 402
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.40 E-value=0.0016 Score=47.80 Aligned_cols=69 Identities=4% Similarity=0.054 Sum_probs=49.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCC-C-CC-ceeEEEEEeecHHHHHHHHHHhhhCccCC
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQ-D-GK-SKGYGFVQYSTQESALNAIEKLYAATVEG 121 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~-~-g~-skg~aFV~F~~~e~A~~Ai~~lng~~i~g 121 (354)
+-+|-|+.||+.+||+++.+.+..+-++.....+... + +. .-.-|||.|.+.++.....+..+|..+-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4589999999999999988888765444322222221 1 11 12569999999999999999998877543
No 403
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.13 E-value=0.0029 Score=60.15 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=42.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHH
Q 036905 51 TPTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIE 112 (354)
Q Consensus 51 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~ 112 (354)
...+.|+|. .|..+++++|.++|++||.|.++....+. .-||.|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHh
Confidence 345789997 79999999999999999999988766542 3699999999999997764
No 404
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.98 E-value=0.0073 Score=46.77 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=53.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeC-------------C-CC-CceeEEEEEeecHHHHHHHHHHhhhC
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVS-------------Q-DG-KSKGYGFVQYSTQESALNAIEKLYAA 117 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d-------------~-~g-~skg~aFV~F~~~e~A~~Ai~~lng~ 117 (354)
...|.|-+.|++.+. .+.+.|++||.|++-.-..+ + .+ ....+-.|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 457888899876655 56689999999876211111 0 00 124678999999999999997 5999
Q ss_pred ccCCeEEEeccccc
Q 036905 118 TVEGMELYAPSLRA 131 (354)
Q Consensus 118 ~i~g~~i~~~~~~~ 131 (354)
.+.|.-|-|....+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99998444555443
No 405
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.68 E-value=0.03 Score=43.32 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=53.5
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeE-EEEeeCC-------------CC-CeeeEEEEEeCCHHHHHHHHHHhCCce
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISS-VKIMRTN-------------RG-ISKGFGFVCFSNPDEANRAINTLNGIL 223 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~-v~i~~~~-------------~g-~~kg~afV~f~~~~~A~~Ai~~l~g~~ 223 (354)
.-|.|-+.|.+ ....+.+.|++||.|.. ....++. .+ ....+..|+|++..+|.+|+.+ ||..
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 34666677655 44557788999999876 2211100 00 1245789999999999999995 9999
Q ss_pred eCCeeEEEEecc
Q 036905 224 FHQKPLYVAIAQ 235 (354)
Q Consensus 224 i~g~~l~v~~a~ 235 (354)
|+|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888774
No 406
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.20 E-value=0.01 Score=56.39 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=45.8
Q ss_pred CceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 036905 158 DKNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQ 226 (354)
Q Consensus 158 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g 226 (354)
.++|+|. .+..+++.+|.++|++||.|.++.+..+. .-|+.|+|.+.+++..++.. .+....+
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~-~~~p~~~ 115 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG-THTPXXX 115 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS-CCCCCCB
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc-cCCCccc
Confidence 3899998 68899999999999999999999988753 35999999999999987654 3334433
No 407
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.18 E-value=1.2 Score=43.03 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhh
Q 036905 53 TFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLY 115 (354)
Q Consensus 53 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~ln 115 (354)
...++|+ +|..+...+|.++|+.||.| +|+.+.| ..|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 4566666 99999999999999999965 4555433 369999999999999999875
No 408
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=82.00 E-value=2.8 Score=40.31 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=44.4
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLN 220 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~ 220 (354)
..++|+ ++..+...+|.+.|+.||. .+|+.+.+ ..|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 566666 8888899999999999995 45665554 359999999999999999885
No 409
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=58.83 E-value=8.2 Score=26.24 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=38.7
Q ss_pred ccCHHHHHHHhhcCC-----CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 036905 169 DVDEIELKQYFSQCG-----IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGILFHQKPLYVAIAQ 235 (354)
Q Consensus 169 ~~t~~~L~~~F~~~G-----~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~~i~g~~l~v~~a~ 235 (354)
.+...+|..++..-+ .|-.+.|..+ |.||+-.. +.|..++..|++..+.|+.+.|..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 355566666665433 4566777654 78998866 56788999999999999999998764
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.46 E-value=45 Score=23.46 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=41.6
Q ss_pred eEEEeCCCCccCHHHHHHHhhc-CC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 036905 160 NLYVKNINDDVDEIELKQYFSQ-CG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 218 (354)
+-|+-.++...+..+|++.++. |+ .|.+|..+.-+.|. .-|+|++....+|......
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC--EEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc--eEEEEEcCCCCcHHHHHHh
Confidence 4455556788999999998875 66 67778777665543 3499999988887766554
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=49.48 E-value=66 Score=22.67 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=47.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHHhhhC
Q 036905 52 PTFIPFTVNLASTIDNWKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEKLYAA 117 (354)
Q Consensus 52 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~lng~ 117 (354)
..+-|.|-|+|..+-..++.-.....|----|..+ .|-|.+.|.+.++...|+.+|-++
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi-------dgqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-------DGQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-------SSCEEEEESSHHHHHHHHHHHEET
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-------cCeeEEEecCChHHHHHHHHHHhc
Confidence 45678899999999888887777778876666654 457999999999999999987443
No 412
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=47.59 E-value=38 Score=27.21 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=32.4
Q ss_pred CcHHHHHHHH--hhcCCeeEEEEEeCCCCCceeEEEEEeecHH-HHHHHH
Q 036905 65 IDNWKLHQIF--SKFGDIQSSKVVVSQDGKSKGYGFVQYSTQE-SALNAI 111 (354)
Q Consensus 65 ~te~~L~~~F--~~~G~i~~v~v~~d~~g~skg~aFV~F~~~e-~A~~Ai 111 (354)
....+|++.| +.|..+. ++.+.+..| +.|++.|.|.+-- .-..|+
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHH
Confidence 4568999977 8998865 677777655 6789999997633 334444
No 413
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=43.39 E-value=36 Score=24.81 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHHhh-cCC---eeEEE-EEeCC-CCCceeEEEEEeecHHHHHHHH
Q 036905 63 STIDNWKLHQIFSK-FGD---IQSSK-VVVSQ-DGKSKGYGFVQYSTQESALNAI 111 (354)
Q Consensus 63 ~~~te~~L~~~F~~-~G~---i~~v~-v~~d~-~g~skg~aFV~F~~~e~A~~Ai 111 (354)
...+..+|++.+.+ |+. +.-|. +.+.- .|++.|||.| |.|.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 56778888888875 443 33333 33333 5788899988 88888776654
No 414
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=42.51 E-value=43 Score=24.63 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHhh-cCC---eeEEEEEeCC--CCCceeEEEEEeecHHHHHHH
Q 036905 63 STIDNWKLHQIFSK-FGD---IQSSKVVVSQ--DGKSKGYGFVQYSTQESALNA 110 (354)
Q Consensus 63 ~~~te~~L~~~F~~-~G~---i~~v~v~~d~--~g~skg~aFV~F~~~e~A~~A 110 (354)
...+..+|++.+.+ |+. +.-|.=++.. .|++.|||.| |.|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45778888887774 543 3333333333 5788899988 8888887764
No 415
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=41.96 E-value=42 Score=24.45 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHhh-cCC---eeEE-EEEeCC-CCCceeEEEEEeecHHHHHHH
Q 036905 63 STIDNWKLHQIFSK-FGD---IQSS-KVVVSQ-DGKSKGYGFVQYSTQESALNA 110 (354)
Q Consensus 63 ~~~te~~L~~~F~~-~G~---i~~v-~v~~d~-~g~skg~aFV~F~~~e~A~~A 110 (354)
...+..+|++.+.+ |+. +.-| .+.+.- .|++.|||.| |.|.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788888888875 443 3333 333333 5788899988 8888877653
No 416
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.54 E-value=91 Score=21.87 Aligned_cols=56 Identities=11% Similarity=0.270 Sum_probs=40.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHHH
Q 036905 56 PFTVNLASTIDNWKLHQIFSK-FG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIEK 113 (354)
Q Consensus 56 lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~~ 113 (354)
-++-.++.+.+..+|++.++. || .|.+|..+..+.|.. -|||++....+|...-.+
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~K--KA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEK--KAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCE--EEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCce--EEEEEcCCCCcHHHHHHh
Confidence 344456788999999999986 66 477777776554433 499999887777665443
No 417
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=37.52 E-value=70 Score=25.69 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=34.8
Q ss_pred ceEEEeCCCC-c--------cCHHHHHHHh--hcCCCeeEEEEeeCCCCCeeeEEEEEeCCHH
Q 036905 159 KNLYVKNIND-D--------VDEIELKQYF--SQCGIISSVKIMRTNRGISKGFGFVCFSNPD 210 (354)
Q Consensus 159 ~~l~v~nl~~-~--------~t~~~L~~~F--~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~ 210 (354)
....|-|++. . ....+|++.| +.|..+. |+...+..| .+|++.|.|.+.-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCCh
Confidence 3556667765 2 3447899977 9998765 666666655 5889999997543
No 418
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=35.43 E-value=1.2e+02 Score=21.42 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=53.3
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCC-------ceeCCeeEEE
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNG-------ILFHQKPLYV 231 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g-------~~i~g~~l~v 231 (354)
+-|-|-|+|..+-..++.-.....|---.|.... |.|.+.|.+.++..-|+..|-+ ..|.|....|
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyid-------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdv 85 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID-------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDV 85 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS-------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEE
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeeec-------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeee
Confidence 5677889999998888877777777666666553 4699999999999999987721 2456776666
Q ss_pred EeccCch
Q 036905 232 AIAQTKR 238 (354)
Q Consensus 232 ~~a~~~~ 238 (354)
--.-+.+
T Consensus 86 istiped 92 (129)
T 4eyt_A 86 ISTIPED 92 (129)
T ss_dssp ECCCCHH
T ss_pred eecCCch
Confidence 5444443
No 419
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=32.80 E-value=86 Score=21.92 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=38.5
Q ss_pred eEEEeCCCCccCHHHHHHHhhc-CC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHH
Q 036905 160 NLYVKNINDDVDEIELKQYFSQ-CG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAI 216 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai 216 (354)
+-|+-.++...+..+|++.++. || .|.+|..+.-+.|. .-|+|++...++|....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~--KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE--KKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSS--EEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCc--eEEEEEECCCCcHHHHH
Confidence 4455566788999999988875 66 67777777655443 34999998776655443
No 420
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=32.31 E-value=1.4e+02 Score=22.81 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCCcHHHHHHHHhh-cCC---eeEEE-EEeCC-CCCceeEEEEEeecHHHHHHH
Q 036905 63 STIDNWKLHQIFSK-FGD---IQSSK-VVVSQ-DGKSKGYGFVQYSTQESALNA 110 (354)
Q Consensus 63 ~~~te~~L~~~F~~-~G~---i~~v~-v~~d~-~g~skg~aFV~F~~~e~A~~A 110 (354)
...+..+|++.+.. |+. +..|. +.+.- .|++.|||.| |.+.+.|.+.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 46788999998875 553 22332 33333 5778899988 8888887654
No 421
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=31.95 E-value=98 Score=24.18 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=40.7
Q ss_pred eEEEeCCCCccCHHHHHHHhhc-CC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 036905 160 NLYVKNINDDVDEIELKQYFSQ-CG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 218 (354)
+-|+--++...+..+|++.++. |+ .|..|..+.-+.|.- -|||++....+|......
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~K--KAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNK--KAYIRLAADSDSLTLANK 146 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCE--EEEEEECSSSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcE--EEEEEcCCCCcHHHHHHh
Confidence 4555556788899999988865 56 677787776655543 499999887777665444
No 422
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=31.39 E-value=37 Score=24.53 Aligned_cols=47 Identities=17% Similarity=0.192 Sum_probs=27.1
Q ss_pred CCCcHHHHHHHHhh-cCC---eeEEEEEeCC--CCCceeEEEEEeecHHHHHHH
Q 036905 63 STIDNWKLHQIFSK-FGD---IQSSKVVVSQ--DGKSKGYGFVQYSTQESALNA 110 (354)
Q Consensus 63 ~~~te~~L~~~F~~-~G~---i~~v~v~~d~--~g~skg~aFV~F~~~e~A~~A 110 (354)
...+..+|++.+.+ |+. +.-|.=++.. .|++.|||.| |.|.+.|.+.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677788877764 433 2222211222 3677888877 7777766553
No 423
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=30.32 E-value=1.1e+02 Score=23.65 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=40.6
Q ss_pred eEEEeCCCCccCHHHHHHHhhc-CC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 036905 160 NLYVKNINDDVDEIELKQYFSQ-CG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 218 (354)
+-|+--++...+..+|++.++. |+ .|..|..+.-..|.- -|||++....+|......
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTK--KAYVRLTADYDALDIANR 138 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCE--EEEEEECTTCCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCce--EEEEEeCCCCcHHHHHHh
Confidence 4555567788999999988865 56 677787776655533 499999887777665443
No 424
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.71 E-value=1.1e+02 Score=21.42 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=27.3
Q ss_pred eeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHhCCc
Q 036905 185 ISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTLNGI 222 (354)
Q Consensus 185 v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l~g~ 222 (354)
|.++.+... ..||-||++...++...++....|.
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 566666543 6899999999999999999888774
No 425
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=26.78 E-value=6.6 Score=30.96 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=17.4
Q ss_pred HHHHHHHhhcCCeeEEEEEeCCCCCceeEEEEEeec
Q 036905 68 WKLHQIFSKFGDIQSSKVVVSQDGKSKGYGFVQYST 103 (354)
Q Consensus 68 ~~L~~~F~~~G~i~~v~v~~d~~g~skg~aFV~F~~ 103 (354)
+|+.++|...|.|.... ..||||||.-.+
T Consensus 2 ~~~~~l~~~~G~Vkwfn-------~~kGfGFI~~~~ 30 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN-------VRMGFGFLSMTA 30 (148)
T ss_dssp ----CCEEEEEEEEEEE-------TTTTEEEEEEEE
T ss_pred CcccccccceeEEEEEE-------CCCCeeEEeeCc
Confidence 45566777777776432 248999998763
No 426
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=25.26 E-value=72 Score=31.51 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=39.8
Q ss_pred CCccCHHHHHHHhh----cCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 036905 167 NDDVDEIELKQYFS----QCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219 (354)
Q Consensus 167 ~~~~t~~~L~~~F~----~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l 219 (354)
+.+.+--||..+|- .+|.|+.+.+..-+.-..+.++++.|.+.++|.+++..+
T Consensus 352 ~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 352 PRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp SSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 34444457888882 678999987765554446778999999999999998866
No 427
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=24.97 E-value=1e+02 Score=24.06 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHhh-cCC---eeEEEEEeCC--CCCceeEEEEEeecHHHHHHH
Q 036905 63 STIDNWKLHQIFSK-FGD---IQSSKVVVSQ--DGKSKGYGFVQYSTQESALNA 110 (354)
Q Consensus 63 ~~~te~~L~~~F~~-~G~---i~~v~v~~d~--~g~skg~aFV~F~~~e~A~~A 110 (354)
...+..+|++.+.. |+. +.-|.=+... .|++.|||.| |.|.+.|.+.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 46788888888875 554 2223323333 5678899988 8888887754
No 428
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=23.75 E-value=1.1e+02 Score=24.00 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=39.4
Q ss_pred eEEEeCCCCccCHHHHHHHhhc-CC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHH
Q 036905 160 NLYVKNINDDVDEIELKQYFSQ-CG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAIN 217 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~ 217 (354)
+-|+-.++...+..+|++.++. |+ .|..|..+.-..|.- -|||++....+|.....
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKK--KAYVKLTPDYDALDVAN 147 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSE--EEEEEECTTSCHHHHHG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCce--EEEEEcCCCCcHHHHHH
Confidence 4555556778888888888865 55 677777776555443 49999988777766544
No 429
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=22.82 E-value=1.3e+02 Score=23.64 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=28.3
Q ss_pred cCHHHHHHHhhcCCCe---eEEEEeeCC-CCCeeeEEEEE
Q 036905 170 VDEIELKQYFSQCGII---SSVKIMRTN-RGISKGFGFVC 205 (354)
Q Consensus 170 ~t~~~L~~~F~~~G~v---~~v~i~~~~-~g~~kg~afV~ 205 (354)
.|+++|+++-...|++ .+..+..+. +|..+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5899999999999987 345666675 89988887753
No 430
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=22.55 E-value=60 Score=30.99 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=29.8
Q ss_pred HHHHHh--hcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHH
Q 036905 174 ELKQYF--SQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRA 215 (354)
Q Consensus 174 ~L~~~F--~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~A 215 (354)
+|+.+| +.+|.|+++.+...+.......+++.|.+.++|.+|
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~ 260 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEI 260 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHH
Confidence 356666 368999998876655444556789999997776553
No 431
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.51 E-value=1.6e+02 Score=18.82 Aligned_cols=55 Identities=9% Similarity=-0.042 Sum_probs=42.8
Q ss_pred ceEEEeCCCCccCHHHHHHHhhcCCCeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 036905 159 KNLYVKNINDDVDEIELKQYFSQCGIISSVKIMRTNRGISKGFGFVCFSNPDEANRAINTL 219 (354)
Q Consensus 159 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~l 219 (354)
.++.|.++.-.--...|...+.. ..|..+.+-.. .+-+.|.|.+.++...+|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----CCEEEEEECCHHHHHHHHHHc
Confidence 46889999888888889999988 88888887653 456888888666677777753
No 432
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.20 E-value=2e+02 Score=22.59 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=39.6
Q ss_pred eEEEeCCCCccCHHHHHHHhhc-CC-CeeEEEEeeCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 036905 160 NLYVKNINDDVDEIELKQYFSQ-CG-IISSVKIMRTNRGISKGFGFVCFSNPDEANRAINT 218 (354)
Q Consensus 160 ~l~v~nl~~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~g~~kg~afV~f~~~~~A~~Ai~~ 218 (354)
+-|+-.++...+..+|++.++. || .|..|..+.-..|. .-|+|++...++|......
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~--KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE--KKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSC--EEEEEEECTTSCHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCc--eEEEEEECCCCcHHHHHHh
Confidence 4555567888999999988875 56 67777776655443 3599999877665554443
No 433
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=21.20 E-value=58 Score=21.26 Aligned_cols=23 Identities=13% Similarity=0.644 Sum_probs=18.3
Q ss_pred eEEEEEeCCCCCceeEEEEEeec
Q 036905 81 QSSKVVVSQDGKSKGYGFVQYST 103 (354)
Q Consensus 81 ~~v~v~~d~~g~skg~aFV~F~~ 103 (354)
..++++.++...+.|+++|.|++
T Consensus 20 R~arlllnrRps~~G~~wiKyED 42 (62)
T 1igq_A 20 RPARLILNRRPPAEGYAWLKYED 42 (62)
T ss_dssp EEEEECTTBCCSSTTEEEEEETT
T ss_pred hhhhhhhccCCCcCceEEEEEec
Confidence 35778877766778999999986
No 434
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=21.07 E-value=1.5e+02 Score=23.38 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=29.0
Q ss_pred CcHHHHHHHHhhcCCe---eEEEEEeCC-CCCceeEEEE
Q 036905 65 IDNWKLHQIFSKFGDI---QSSKVVVSQ-DGKSKGYGFV 99 (354)
Q Consensus 65 ~te~~L~~~F~~~G~i---~~v~v~~d~-~g~skg~aFV 99 (354)
.|+++|+++=...|.+ ..+.+..|. +|+.+.|||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 5889999999999986 356777786 8999988886
No 435
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=20.96 E-value=2e+02 Score=22.14 Aligned_cols=55 Identities=11% Similarity=0.343 Sum_probs=38.3
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHH
Q 036905 56 PFTVNLASTIDNWKLHQIFSK-FG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIE 112 (354)
Q Consensus 56 lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~ 112 (354)
-++--++.+.+..+|++.++. || .|..|..+..+.|.- -|||.+....+|...-.
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~K--KAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTK--KAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCE--EEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCce--EEEEEeCCCCcHHHHHH
Confidence 344446778999999998886 66 477777776655533 49999987766665443
No 436
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=20.67 E-value=2.1e+02 Score=22.31 Aligned_cols=55 Identities=9% Similarity=0.280 Sum_probs=38.4
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-cC-CeeEEEEEeCCCCCceeEEEEEeecHHHHHHHHH
Q 036905 56 PFTVNLASTIDNWKLHQIFSK-FG-DIQSSKVVVSQDGKSKGYGFVQYSTQESALNAIE 112 (354)
Q Consensus 56 lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~v~~d~~g~skg~aFV~F~~~e~A~~Ai~ 112 (354)
-++--++.+.+..+|++.++. || .|..|..+..+.|.- -|||.+....+|...-.
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~K--KAyV~La~~~dAldvAn 145 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNK--KAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCE--EEEEEECSSSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcE--EEEEEcCCCCcHHHHHH
Confidence 334445778999999998886 66 477777776655533 49999987766665443
Done!