BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036907
(209 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001
PE=1 SV=1
Length = 491
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 108/223 (48%), Gaps = 39/223 (17%)
Query: 12 DLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSE 71
D TN IEDCYI SG+D VAVK GW+ YGIA P+ + +RR++ +P + + +GSE
Sbjct: 255 DSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSE 314
Query: 72 MSGGIFNART--------------KIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSH 117
MSGGI + R K GRGG +++I +R + M+ +K + SH
Sbjct: 315 MSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSH 374
Query: 118 PDEGRDPKALPKIRGISFVNVVSVNTIKAPVRAGI--------------IVLAPSVK--- 160
D DPKA P I+GI++ ++V+ N A GI I LA K
Sbjct: 375 ADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVP 434
Query: 161 WQSQFVSGFNSQVFPLPCPQLQNKTRFSWVTSYPFNSCLQNFP 203
W V G +S V P PC L ++ P + L NFP
Sbjct: 435 WTCTDVEGISSGVTPTPCSTLPDQG--------PEKTSLCNFP 469
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana
GN=At3g15720 PE=1 SV=1
Length = 456
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 14 STNVCIEDCYIESGNDLVAVKKGWNHYGIA--MARPSSNITMRRV--SGTTPTYSGVGI- 68
S+NV I+DC I +G+D +A+ G ++ I+ P I++ + G T T V +
Sbjct: 196 SSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQ 255
Query: 69 GSEMSGGIFNARTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSN-SHPDEGRDPKA 126
G + AR K +G G IT I ++ V+ PI I + N D +D K+
Sbjct: 256 NCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKS 314
>sp|P58598|PGLR_RALSO Polygalacturonase OS=Ralstonia solanacearum (strain GMI1000)
GN=pglA PE=3 SV=1
Length = 531
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 45/115 (39%), Gaps = 32/115 (27%)
Query: 14 STNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVG--IGSE 71
STNV + + YI +G+D VA+K S T + Y G G IGSE
Sbjct: 293 STNVVLANSYISTGDDHVAIKA------------SGGATRNLLFAHNHFYYGHGLSIGSE 340
Query: 72 MSGGIFNA------------------RTKIDKGRGGNIENITIRYIKMERVKIPI 108
GG+ N R K D RGG + NI I M VK P+
Sbjct: 341 TDGGVSNMQVTDLAMDGNDSSGGNGLRIKSDISRGGKVNNIVYNGICMRNVKEPL 395
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1
Length = 312
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 32/156 (20%)
Query: 16 NVCIEDCYIESGNDLVAVKKG-----WNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGS 70
NV I G+D +AVK G +A R IT+R P + G+ IGS
Sbjct: 82 NVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETR---GITVRHCL-MQPGHGGLVIGS 137
Query: 71 EMSGGIFNARTK------IDKGR---------GGNIENITIRYIKMERVKIPIRIGR--- 112
EMSGG+ + + D+G GG + NIT+R + ++ V+ +
Sbjct: 138 EMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDGVQTALSANAHYH 197
Query: 113 -GSNSHPD--EGRDPKALPKIRGISFVNVVSVNTIK 145
++ H D + R+P P G FV+ ++V ++
Sbjct: 198 CDADGHDDWVQSRNPA--PVNDGTPFVDGITVEDVE 231
>sp|P20041|PGLR_RALSL Polygalacturonase OS=Ralstonia solanacearum GN=pglA PE=1 SV=1
Length = 529
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 47/115 (40%), Gaps = 32/115 (27%)
Query: 14 STNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVG--IGSE 71
STNV + YI +G+D VAVK A + P+ N+ Y G G IGSE
Sbjct: 291 STNVVLAYSYINTGDDHVAVK--------ASSGPTRNLLFAH----NHFYYGHGLSIGSE 338
Query: 72 MSGGIFNA------------------RTKIDKGRGGNIENITIRYIKMERVKIPI 108
+ G+ N R K D RGG + NI I M VK P+
Sbjct: 339 TNTGVSNMLVTDLTMDGNDSSAGNGLRIKSDASRGGKVTNIVYDGICMRNVKEPL 393
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1
Length = 507
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 19 IEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGS-------- 70
IE C I +G+D VAV G SSNIT++ + T G+ IGS
Sbjct: 247 IEKCTIGTGDDCVAVGTG-----------SSNITIKDL--TCGPGHGMSIGSLGKGNSRS 293
Query: 71 -----EMSGGIF-----NARTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDE 120
+ G F R K +G G +IT ++M + PI I + +
Sbjct: 294 EVSFVHLDGAKFIDTQNGLRIKTWQGGSGLASHITYENVEMINAENPILINQFYCTSAAA 353
Query: 121 GRDPKALPKIRGISFVNVVSVNTIKAPVR 149
++ ++ KI+ ++F N+ + A ++
Sbjct: 354 CKNQRSAVKIQDVTFKNIHGTSATTAAIQ 382
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1
Length = 431
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 9 HYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGI--AMARPSSNITMRRV--SGTTPTYS 64
H T+ + N+ + + I +G+D ++++ G + I P I++ + + S
Sbjct: 246 HITN-TQNIRVSNSDIGTGDDCISIEDGTQNLQIFDLTCGPGHGISIGSLGDDNSKAYVS 304
Query: 65 GVGI-GSEMSGGIFNARTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRD 123
G+ + G++ S R K +G G +NI + I+ME VK PI I + D+ D
Sbjct: 305 GINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVKNPIIIDQ-DYCDKDKCED 363
Query: 124 PKALPKIRGISFVNV 138
++ +++ + + N+
Sbjct: 364 QESAVQVKNVVYKNI 378
>sp|Q4WV10|PELA_ASPFU Probable pectin lyase A OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pelA PE=3
SV=1
Length = 380
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 2 SEKMKRKHY---TDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMR---- 54
+ ++ R+H T + I +CYI+ D A G++++GI + + +TM+
Sbjct: 191 TARIGRQHIVLGTQADNRITISNCYIDGVTDYSATCNGYHYWGIYLDGSNDMVTMKGNYI 250
Query: 55 -RVSGTTPTYSG 65
SG +P G
Sbjct: 251 YHTSGRSPKVQG 262
>sp|Q0I0A9|RS7_SHESR 30S ribosomal protein S7 OS=Shewanella sp. (strain MR-7) GN=rpsG
PE=3 SV=1
Length = 156
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 29 DLVAVKKGWNHYGIAMA-----RPSSNITMRRVSGTT 60
D++A KKG NH I A RPS + RRV G+T
Sbjct: 48 DVIAEKKGANHLDILEAALDNVRPSVEVKSRRVGGST 84
>sp|Q0HNU1|RS7_SHESM 30S ribosomal protein S7 OS=Shewanella sp. (strain MR-4) GN=rpsG
PE=3 SV=1
Length = 156
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 29 DLVAVKKGWNHYGIAMA-----RPSSNITMRRVSGTT 60
D++A KKG NH I A RPS + RRV G+T
Sbjct: 48 DVIAEKKGANHLDILEAALDNVRPSVEVKSRRVGGST 84
>sp|Q8EK72|RS7_SHEON 30S ribosomal protein S7 OS=Shewanella oneidensis (strain MR-1)
GN=rpsG PE=3 SV=1
Length = 156
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 29 DLVAVKKGWNHYGIAMA-----RPSSNITMRRVSGTT 60
D++A KKG NH I A RPS + RRV G+T
Sbjct: 48 DVIAEKKGANHLDILEAALDNVRPSVEVKSRRVGGST 84
>sp|E9PVD1|CCD62_MOUSE Coiled-coil domain-containing protein 62 OS=Mus musculus GN=Ccdc62
PE=3 SV=1
Length = 701
Score = 30.8 bits (68), Expect = 7.4, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 29 DLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSE 71
DL+ +K W+ G P + +T+ +V +P GVG+ +E
Sbjct: 444 DLLDKQKSWSLGGKIQTEPENKVTLCKVHAKSPKCDGVGLPTE 486
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,092,399
Number of Sequences: 539616
Number of extensions: 3330181
Number of successful extensions: 6411
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6402
Number of HSP's gapped (non-prelim): 13
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)