Query 036907
Match_columns 209
No_of_seqs 189 out of 1363
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03003 Probable polygalactur 100.0 5.5E-41 1.2E-45 309.2 21.5 170 2-184 184-394 (456)
2 PLN02793 Probable polygalactur 100.0 1.9E-39 4E-44 299.4 21.7 166 3-181 224-425 (443)
3 PLN02155 polygalacturonase 100.0 1.7E-39 3.6E-44 295.8 20.7 166 2-180 191-393 (394)
4 PLN02218 polygalacturonase ADP 100.0 2.4E-39 5.2E-44 297.7 21.2 162 3-179 239-431 (431)
5 PLN02188 polygalacturonase/gly 100.0 9.3E-39 2E-43 291.8 21.4 164 3-179 202-404 (404)
6 PLN03010 polygalacturonase 100.0 1.1E-38 2.4E-43 291.4 20.7 165 3-180 204-404 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 4.4E-34 9.5E-39 254.7 16.6 135 3-151 139-292 (326)
8 COG5434 PGU1 Endopygalactoruna 99.9 8.4E-23 1.8E-27 191.5 10.8 106 5-111 286-405 (542)
9 PLN02218 polygalacturonase ADP 99.1 2E-09 4.3E-14 99.8 15.7 122 9-150 218-352 (431)
10 PLN02793 Probable polygalactur 99.1 2.6E-09 5.7E-14 99.3 15.4 122 9-150 203-337 (443)
11 PLN02155 polygalacturonase 99.1 5E-09 1.1E-13 96.2 16.3 125 9-150 171-306 (394)
12 PLN03003 Probable polygalactur 99.1 6.2E-09 1.3E-13 96.9 16.4 122 9-150 164-298 (456)
13 PLN03010 polygalacturonase 99.0 8E-09 1.7E-13 95.2 16.1 122 9-150 183-317 (409)
14 PLN02188 polygalacturonase/gly 99.0 9.8E-09 2.1E-13 94.5 16.5 126 9-150 181-317 (404)
15 PF00295 Glyco_hydro_28: Glyco 99.0 8.2E-09 1.8E-13 92.3 13.1 124 9-150 118-252 (326)
16 PF03718 Glyco_hydro_49: Glyco 98.3 4.8E-06 1E-10 78.4 11.3 114 4-150 371-497 (582)
17 COG5434 PGU1 Endopygalactoruna 98.1 3.4E-05 7.5E-10 73.4 11.2 118 8-144 263-399 (542)
18 smart00656 Amb_all Amb_all dom 96.9 0.0031 6.7E-08 52.5 6.4 56 4-71 58-123 (190)
19 PF13229 Beta_helix: Right han 96.5 0.01 2.2E-07 45.6 6.8 62 7-81 1-63 (158)
20 PF13229 Beta_helix: Right han 96.1 0.027 5.8E-07 43.2 7.1 95 5-112 22-121 (158)
21 TIGR03805 beta_helix_1 paralle 96.0 0.031 6.7E-07 50.0 8.1 22 48-69 115-136 (314)
22 TIGR03805 beta_helix_1 paralle 96.0 0.13 2.8E-06 46.0 11.9 52 5-69 106-158 (314)
23 PF00544 Pec_lyase_C: Pectate 95.2 0.02 4.3E-07 48.0 3.6 76 5-104 74-158 (200)
24 PF12708 Pectate_lyase_3: Pect 94.8 0.31 6.7E-06 39.8 9.5 21 92-112 185-206 (225)
25 PF05048 NosD: Periplasmic cop 94.1 0.48 1E-05 39.8 9.3 63 7-82 14-76 (236)
26 PF05048 NosD: Periplasmic cop 93.8 0.52 1.1E-05 39.6 9.1 94 5-112 34-130 (236)
27 PF12541 DUF3737: Protein of u 93.5 0.16 3.4E-06 44.6 5.4 74 12-107 153-228 (277)
28 smart00656 Amb_all Amb_all dom 92.5 0.94 2E-05 37.6 8.5 42 8-61 33-81 (190)
29 PF12708 Pectate_lyase_3: Pect 92.4 0.75 1.6E-05 37.5 7.9 68 8-108 156-224 (225)
30 PF12541 DUF3737: Protein of u 92.3 0.67 1.5E-05 40.7 7.6 14 48-61 57-70 (277)
31 PF00544 Pec_lyase_C: Pectate 91.5 1.1 2.5E-05 37.3 8.0 72 8-110 38-134 (200)
32 PF03211 Pectate_lyase: Pectat 91.4 2.8 6E-05 35.8 10.2 29 6-36 75-104 (215)
33 PF03718 Glyco_hydro_49: Glyco 89.1 9.9 0.00022 36.7 12.7 96 5-110 392-496 (582)
34 COG3866 PelB Pectate lyase [Ca 88.5 5.8 0.00013 35.8 10.2 43 8-61 118-166 (345)
35 COG3866 PelB Pectate lyase [Ca 88.3 1.5 3.3E-05 39.4 6.4 76 6-104 144-229 (345)
36 TIGR03804 para_beta_helix para 84.7 1.6 3.5E-05 27.1 3.5 40 8-59 1-40 (44)
37 TIGR03808 RR_plus_rpt_1 twin-a 77.9 3.7 7.9E-05 38.8 4.7 46 3-60 236-282 (455)
38 TIGR03808 RR_plus_rpt_1 twin-a 70.2 22 0.00048 33.6 7.8 18 8-25 137-154 (455)
39 smart00710 PbH1 Parallel beta- 63.9 11 0.00023 19.5 2.8 21 15-35 2-23 (26)
40 PF01696 Adeno_E1B_55K: Adenov 49.6 2E+02 0.0043 26.8 10.1 99 31-151 67-172 (386)
41 PF07602 DUF1565: Protein of u 37.9 93 0.002 27.1 5.8 20 49-68 122-141 (246)
42 PF07602 DUF1565: Protein of u 20.1 3.3E+02 0.0071 23.7 6.0 25 8-33 116-141 (246)
No 1
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=5.5e-41 Score=309.20 Aligned_cols=170 Identities=24% Similarity=0.318 Sum_probs=142.6
Q ss_pred CCCCCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCC----CEE
Q 036907 2 SEKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSG----GIF 77 (209)
Q Consensus 2 ~~~NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g----~i~ 77 (209)
+.+||||||+++|+||+|+||+|++||||||||+| ++||+|+||+|+. +|||+||||+.+ +|+
T Consensus 184 ~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-----------s~NI~I~n~~c~~--GHGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 184 SSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGIDCGP--GHGISIGSLGKDGETATVE 250 (456)
T ss_pred CCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-----------CccEEEEeeEEEC--CCCeEEeeccCCCCcceEE
Confidence 36899999999999999999999999999999998 7999999999995 599999999853 488
Q ss_pred EE--------------EEeeeCCCCceEEEEEEEEEEEeeccccEEEeecCCCC-CCCCC-CCCCCCeEEeEEEEEEEEE
Q 036907 78 NA--------------RTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSH-PDEGR-DPKALPKIRGISFVNVVSV 141 (209)
Q Consensus 78 nV--------------rIKt~~g~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~-~~~~~-~~~~~~~I~nIt~~nI~gt 141 (209)
|| |||||+|++|+|+||+|+||+|+++++||.|+|+|++. +...+ .+...++|+||+|+||+||
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GT 330 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGT 330 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEE
Confidence 88 99999999999999999999999999999999999853 22212 2345689999999999999
Q ss_pred ccCC-CeEEEEE------------EEeCC-------CCcceEEeEEeecceee-CCCCCCCCCC
Q 036907 142 NTIK-APVRAGI------------IVLAP-------SVKWQSQFVSGFNSQVF-PLPCPQLQNK 184 (209)
Q Consensus 142 ~~~~-a~~l~g~------------i~~~~-------~~~~~c~nv~g~~~~v~-P~~C~~~~~~ 184 (209)
.+.. ++.|.|. +.+.. ...|+|+||+|.+..+. |+||+++.+.
T Consensus 331 s~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~~~ 394 (456)
T PLN03003 331 SKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELSTD 394 (456)
T ss_pred eCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccccCCC
Confidence 8764 7888765 22221 24699999999554454 4589998776
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.9e-39 Score=299.41 Aligned_cols=166 Identities=25% Similarity=0.285 Sum_probs=141.1
Q ss_pred CCCCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccc----cCCCEEE
Q 036907 3 EKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSE----MSGGIFN 78 (209)
Q Consensus 3 ~~NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe----~~g~i~n 78 (209)
..||||||+++|+||+|+||+|++|||||+||++ ++||+|+||+|.. +|||+|||| +.++|+|
T Consensus 224 spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~-----------s~nI~I~n~~c~~--GhGisIGSlg~~~~~~~V~n 290 (443)
T PLN02793 224 SPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN-----------SSRIKIRNIACGP--GHGISIGSLGKSNSWSEVRD 290 (443)
T ss_pred CCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC-----------cCCEEEEEeEEeC--CccEEEecccCcCCCCcEEE
Confidence 4899999999999999999999999999999997 7999999999985 599999997 4577999
Q ss_pred E--------------EEeeeCCCCceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccC
Q 036907 79 A--------------RTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTI 144 (209)
Q Consensus 79 V--------------rIKt~~g~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~ 144 (209)
| |||||+|++|+|+||+|+||+|+++.+||.|+|+|++.......+...+.|+||+|+||+++.+.
T Consensus 291 V~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~ 370 (443)
T PLN02793 291 ITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSAT 370 (443)
T ss_pred EEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcc
Confidence 8 99999999999999999999999999999999999763322222345679999999999999875
Q ss_pred C-CeEEEEE------------EEeC----CCCcceEEeEEe-ecceeeCCCCCCC
Q 036907 145 K-APVRAGI------------IVLA----PSVKWQSQFVSG-FNSQVFPLPCPQL 181 (209)
Q Consensus 145 ~-a~~l~g~------------i~~~----~~~~~~c~nv~g-~~~~v~P~~C~~~ 181 (209)
. ++.|.|. |.+. ....+.|+|++| ..+.+.|+||++.
T Consensus 371 ~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~~~ 425 (443)
T PLN02793 371 EEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCFSD 425 (443)
T ss_pred cccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccccC
Confidence 4 7777765 2222 124689999999 5567899999865
No 3
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.7e-39 Score=295.81 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=139.3
Q ss_pred CCCCCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccc----cCCCEE
Q 036907 2 SEKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSE----MSGGIF 77 (209)
Q Consensus 2 ~~~NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe----~~g~i~ 77 (209)
+.+||||||+++|+||+|+||+|++||||||||++ ++||+|+||+|.. +|||+|||| +.++|+
T Consensus 191 ~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~g-----------s~nI~I~n~~c~~--GhGisIGS~g~~~~~~~V~ 257 (394)
T PLN02155 191 NSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG-----------TRNFLITKLACGP--GHGVSIGSLAKELNEDGVE 257 (394)
T ss_pred CCCCCCccccccceeEEEEeeEEecCCceEEcCCC-----------CceEEEEEEEEEC--CceEEeccccccCCCCcEE
Confidence 36899999999999999999999999999999998 7999999999995 599999998 367899
Q ss_pred EE--------------EEeeeCC-CCceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEc
Q 036907 78 NA--------------RTKIDKG-RGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVN 142 (209)
Q Consensus 78 nV--------------rIKt~~g-~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~ 142 (209)
|| |||||++ ++|+|+||+|+||+|+++++||.|+|+|+........+...+.|+||+|+||+++.
T Consensus 258 nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~ 337 (394)
T PLN02155 258 NVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTS 337 (394)
T ss_pred EEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEe
Confidence 98 9999976 78999999999999999999999999997533221122345799999999999998
Q ss_pred cCC-CeEEEEE------------EEeC----CCCcceEEeEEee-cceeeCCCCCC
Q 036907 143 TIK-APVRAGI------------IVLA----PSVKWQSQFVSGF-NSQVFPLPCPQ 180 (209)
Q Consensus 143 ~~~-a~~l~g~------------i~~~----~~~~~~c~nv~g~-~~~v~P~~C~~ 180 (209)
++. ++.|.|. +.+. ....|+|+||+|. .+.+.|++|++
T Consensus 338 ~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 338 ATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred cCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcccccC
Confidence 854 7788775 2222 2357999999995 45557888975
No 4
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2.4e-39 Score=297.70 Aligned_cols=162 Identities=18% Similarity=0.250 Sum_probs=137.3
Q ss_pred CCCCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccC----CCEEE
Q 036907 3 EKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMS----GGIFN 78 (209)
Q Consensus 3 ~~NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~----g~i~n 78 (209)
+.||||||+++|+||+|+||+|++||||||||+| ++||+|+||+|+. +|||+||||+. ++|+|
T Consensus 239 spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksg-----------s~nI~I~n~~c~~--GHGisIGS~g~~~~~~~V~n 305 (431)
T PLN02218 239 SPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG-----------SQNVQINDITCGP--GHGISIGSLGDDNSKAFVSG 305 (431)
T ss_pred CCCCCcEeecccceEEEEccEEecCCceEEecCC-----------CceEEEEeEEEEC--CCCEEECcCCCCCCCceEEE
Confidence 4799999999999999999999999999999998 8999999999985 59999999984 46888
Q ss_pred E--------------EEeeeCCCCceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccC
Q 036907 79 A--------------RTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTI 144 (209)
Q Consensus 79 V--------------rIKt~~g~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~ 144 (209)
| |||||+|++|+|+||+|+||+|++|++||+|+|+|++++... .+...+.|+||+|+||+++++.
T Consensus 306 V~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~-~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 306 VTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCT-SQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred EEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCC-CCCCCeEEEEEEEEeEEEEecC
Confidence 8 999999999999999999999999999999999998754321 2235679999999999999875
Q ss_pred -CCeEEEEE------------EEeCCCCcceEEeEEeecceeeCCCCC
Q 036907 145 -KAPVRAGI------------IVLAPSVKWQSQFVSGFNSQVFPLPCP 179 (209)
Q Consensus 145 -~a~~l~g~------------i~~~~~~~~~c~nv~g~~~~v~P~~C~ 179 (209)
.|+.|.|. +.+. .....|+||+|.+..+.|++|.
T Consensus 385 ~~ai~l~cs~~~pc~nI~l~nV~i~-~~~~~c~n~~~~~~~~~~p~c~ 431 (431)
T PLN02218 385 DVAITFNCSKNYPCQGIVLDNVNIK-GGKATCTNANVVDKGAVSPQCN 431 (431)
T ss_pred CcEEEEEECCCCCEeeEEEEeEEEE-CCeeeEEEeeEEEcccCCCCCC
Confidence 47788775 2232 2457899999965555555784
No 5
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=9.3e-39 Score=291.83 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=139.0
Q ss_pred CCCCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEcc----ccCCCEEE
Q 036907 3 EKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGS----EMSGGIFN 78 (209)
Q Consensus 3 ~~NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGS----e~~g~i~n 78 (209)
..||||||+++|+||+|+||+|++||||||||++ ++||+|+|+.|.. +|||+||| |+.++|+|
T Consensus 202 spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg-----------~~nI~I~n~~c~~--ghGisiGSlG~~~~~~~V~n 268 (404)
T PLN02188 202 SPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG-----------NSQVTITRIRCGP--GHGISVGSLGRYPNEGDVTG 268 (404)
T ss_pred CCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccC-----------CccEEEEEEEEcC--CCcEEeCCCCCCCcCCcEEE
Confidence 5799999999999999999999999999999998 6899999999985 59999999 77888999
Q ss_pred E--------------EEeeeCC--CCceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEc
Q 036907 79 A--------------RTKIDKG--RGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVN 142 (209)
Q Consensus 79 V--------------rIKt~~g--~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~ 142 (209)
| |||||+| ++|+|+||+|+||+|+++++||.|+|+|++++.....+...+.|+||+|+||+++.
T Consensus 269 V~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~ 348 (404)
T PLN02188 269 LVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTS 348 (404)
T ss_pred EEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEe
Confidence 8 9999987 45899999999999999999999999998644321122345799999999999998
Q ss_pred cCC-CeEEEEE------------EEe--C-C--CCcceEEeEEe-ecceeeCCCCC
Q 036907 143 TIK-APVRAGI------------IVL--A-P--SVKWQSQFVSG-FNSQVFPLPCP 179 (209)
Q Consensus 143 ~~~-a~~l~g~------------i~~--~-~--~~~~~c~nv~g-~~~~v~P~~C~ 179 (209)
+.. ++.|.|. +.+ . . ...|+|+||+| ..+.+.|+||+
T Consensus 349 ~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 349 SSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred cCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 754 7778774 223 2 1 24699999999 56789999996
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=1.1e-38 Score=291.38 Aligned_cols=165 Identities=23% Similarity=0.268 Sum_probs=141.2
Q ss_pred CCCCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCC----EEE
Q 036907 3 EKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGG----IFN 78 (209)
Q Consensus 3 ~~NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~----i~n 78 (209)
++||||||+++|+||+|+||+|++||||||||++ ++|+.|+++.|.. +|||+||||+.++ |+|
T Consensus 204 s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg-----------s~ni~I~~~~C~~--gHGisIGS~g~~~~~~~V~n 270 (409)
T PLN03010 204 SPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG-----------SSNINITQINCGP--GHGISVGSLGADGANAKVSD 270 (409)
T ss_pred CCCCCceeeeccceEEEEeeEEecCCCeEEecCC-----------CCcEEEEEEEeEC--cCCEEEccCCCCCCCCeeEE
Confidence 5899999999999999999999999999999998 6799999999985 5999999997654 888
Q ss_pred E--------------EEeeeCCCCceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccC
Q 036907 79 A--------------RTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTI 144 (209)
Q Consensus 79 V--------------rIKt~~g~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~ 144 (209)
| |||||+|++|+|+||+|+||+|+++++||.|+|+|+........+...+.|+||+|+||+||.+.
T Consensus 271 V~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~ 350 (409)
T PLN03010 271 VHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSN 350 (409)
T ss_pred EEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCC
Confidence 7 99999999999999999999999999999999999864332233456789999999999999775
Q ss_pred -CCeEEEEE------------EEeC----CCCcceEEeEEe-ecceeeCCCCCC
Q 036907 145 -KAPVRAGI------------IVLA----PSVKWQSQFVSG-FNSQVFPLPCPQ 180 (209)
Q Consensus 145 -~a~~l~g~------------i~~~----~~~~~~c~nv~g-~~~~v~P~~C~~ 180 (209)
.++.|.|. +.+. ..+.+.|+||+| ..+.+.|++|++
T Consensus 351 ~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~~ 404 (409)
T PLN03010 351 ENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCFK 404 (409)
T ss_pred CccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCcccc
Confidence 47888863 2332 235799999999 557788888985
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=4.4e-34 Score=254.71 Aligned_cols=135 Identities=35% Similarity=0.451 Sum_probs=115.9
Q ss_pred CCCCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCC----CEEE
Q 036907 3 EKMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSG----GIFN 78 (209)
Q Consensus 3 ~~NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g----~i~n 78 (209)
..||||||+++|+||+|+||+|++||||||||++ ..||+|+||+|++ +|||+||||+.+ .|+|
T Consensus 139 ~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~~--ghGisiGS~~~~~~~~~i~n 205 (326)
T PF00295_consen 139 SPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSG-----------SGNILVENCTCSG--GHGISIGSEGSGGSQNDIRN 205 (326)
T ss_dssp CTS--SEEEESEEEEEEESEEEESSSESEEESSE-----------ECEEEEESEEEES--SSEEEEEEESSSSE--EEEE
T ss_pred CCCcceEEEEeeeEEEEEEeecccccCccccccc-----------ccceEEEeEEEec--cccceeeeccCCccccEEEe
Confidence 4799999999999999999999999999999998 5699999999996 599999999876 4788
Q ss_pred E--------------EEeeeCCCCceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccC
Q 036907 79 A--------------RTKIDKGRGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTI 144 (209)
Q Consensus 79 V--------------rIKt~~g~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~ 144 (209)
| |||||+|++|+|+||+||||+|+++++||.|++.|..... ...+...+.|+||+|+||+++...
T Consensus 206 V~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~-~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 206 VTFENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGP-CGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp EEEEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEE-SSCSSSSSEEEEEEEEEEEEEEST
T ss_pred EEEEEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEeccccccc-cCcccCCceEEEEEEEeeEEEecc
Confidence 8 9999999999999999999999999999999999976221 122334569999999999999886
Q ss_pred -CCeEEEE
Q 036907 145 -KAPVRAG 151 (209)
Q Consensus 145 -~a~~l~g 151 (209)
.++.|.|
T Consensus 285 ~~~i~i~~ 292 (326)
T PF00295_consen 285 SSAISIDC 292 (326)
T ss_dssp SEEEEEE-
T ss_pred ceEEEEEE
Confidence 4677766
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=8.4e-23 Score=191.52 Aligned_cols=106 Identities=35% Similarity=0.512 Sum_probs=98.3
Q ss_pred CCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCCEEEE-----
Q 036907 5 MKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNA----- 79 (209)
Q Consensus 5 NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~i~nV----- 79 (209)
|||||||++|+||+|++|+|++|||||+||+|....+.+...|++||+|+||++..+ +.|+.+|||+.++|+||
T Consensus 286 NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g-hG~~v~Gse~~ggv~ni~ved~ 364 (542)
T COG5434 286 NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG-HGGLVLGSEMGGGVQNITVEDC 364 (542)
T ss_pred CCCccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceeccc-ccceEeeeecCCceeEEEEEee
Confidence 999999999999999999999999999999998888777888999999999999976 66788999999999998
Q ss_pred ---------EEeeeCCCCceEEEEEEEEEEEeeccccEEEe
Q 036907 80 ---------RTKIDKGRGGNIENITIRYIKMERVKIPIRIG 111 (209)
Q Consensus 80 ---------rIKt~~g~gG~v~nI~f~nI~m~~v~~pI~i~ 111 (209)
||||..++||.++||+|++++|.++..+..|.
T Consensus 365 ~~~~~d~GLRikt~~~~gG~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 365 VMDNTDRGLRIKTNDGRGGGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eeccCcceeeeeeecccceeEEEEEEecccccCcccceeee
Confidence 99999999999999999999999997655454
No 9
>PLN02218 polygalacturonase ADPG
Probab=99.13 E-value=2e-09 Score=99.84 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=91.3
Q ss_pred eeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCC-CEEEEEEeeeCCC
Q 036907 9 HYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSG-GIFNARTKIDKGR 87 (209)
Q Consensus 9 Idi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g-~i~nVrIKt~~g~ 87 (209)
+++..|+||.|++.+|.+-.| .++.+|+... .++||+|+||++..+ +.+|+|.|.... .|+|+.+ .+|.
T Consensus 218 i~~~~~~nV~i~~v~I~a~~~------spNTDGIdi~-ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I~n~~c--~~GH 287 (431)
T PLN02218 218 ISIEKCSNVQVSNVVVTAPAD------SPNTDGIHIT-NTQNIRVSNSIIGTG-DDCISIESGSQNVQINDITC--GPGH 287 (431)
T ss_pred EEEEceeeEEEEEEEEeCCCC------CCCCCcEeec-ccceEEEEccEEecC-CceEEecCCCceEEEEeEEE--ECCC
Confidence 566778888888888876322 2456776654 379999999999988 889999985321 2333322 3332
Q ss_pred C------------ceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccCCCeEEE
Q 036907 88 G------------GNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRA 150 (209)
Q Consensus 88 g------------G~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~~a~~l~ 150 (209)
| +.|+||+++|++|.+..++++|...-+ ....++||+|+||++.....++.|.
T Consensus 288 GisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v~nI~f~ni~m~~V~~pI~Id 352 (431)
T PLN02218 288 GISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTASNIIFQNIQMENVKNPIIID 352 (431)
T ss_pred CEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEEEEEEEEeEEEEcccccEEEE
Confidence 2 579999999999999999999997422 2358999999999999988787765
No 10
>PLN02793 Probable polygalacturonase
Probab=99.10 E-value=2.6e-09 Score=99.32 Aligned_cols=122 Identities=17% Similarity=0.140 Sum_probs=89.9
Q ss_pred eeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCC-CEEEEEEeeeCCC
Q 036907 9 HYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSG-GIFNARTKIDKGR 87 (209)
Q Consensus 9 Idi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g-~i~nVrIKt~~g~ 87 (209)
+++..|+||+|++.+|.+..+ .++.+|+... .++||+|+||++..+ +.+|+|.+.... .|+|+.. .+|.
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~------spNTDGIdi~-~s~nV~I~n~~I~~g-DDcIaik~~s~nI~I~n~~c--~~Gh 272 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPAT------SPNTDGIHIS-ASRGVVIKDSIVRTG-DDCISIVGNSSRIKIRNIAC--GPGH 272 (443)
T ss_pred EEEEccCcEEEEEEEEECCCC------CCCCCcEeee-ccceEEEEeCEEeCC-CCeEEecCCcCCEEEEEeEE--eCCc
Confidence 566678888888888876432 2556676554 379999999999988 899999864321 2444422 2222
Q ss_pred C------------ceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccCCCeEEE
Q 036907 88 G------------GNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRA 150 (209)
Q Consensus 88 g------------G~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~~a~~l~ 150 (209)
| +.|+||+|+|++|.+..++++|....+ ....++||+|+||++++...++.|.
T Consensus 273 GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g----------~~G~v~nItf~ni~m~nv~~pI~I~ 337 (443)
T PLN02793 273 GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG----------GSGNASKITFQNIFMENVSNPIIID 337 (443)
T ss_pred cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC----------CCEEEEEEEEEeEEEecCCceEEEE
Confidence 1 569999999999999999999997532 1347999999999999987776664
No 11
>PLN02155 polygalacturonase
Probab=99.09 E-value=5e-09 Score=96.17 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=91.5
Q ss_pred eeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCC-CEEEEEEeeeCC-
Q 036907 9 HYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSG-GIFNARTKIDKG- 86 (209)
Q Consensus 9 Idi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g-~i~nVrIKt~~g- 86 (209)
+++..|+||+|++.+|.+--+ +++.+|+... .++||+|+||++..+ +.+|+|++.... .|+|+...-..|
T Consensus 171 i~~~~~~nv~i~~v~I~~p~~------~~NtDGidi~-~s~nV~I~~~~I~~g-DDcIaik~gs~nI~I~n~~c~~GhGi 242 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAPGN------SPNTDGFHVQ-FSTGVTFTGSTVQTG-DDCVAIGPGTRNFLITKLACGPGHGV 242 (394)
T ss_pred EEEECeeeEEEEEEEEECCCC------CCCCCccccc-cceeEEEEeeEEecC-CceEEcCCCCceEEEEEEEEECCceE
Confidence 566788888888888877322 3566776553 389999999999988 889999985422 244442221111
Q ss_pred ---------CCceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccCCCeEEE
Q 036907 87 ---------RGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRA 150 (209)
Q Consensus 87 ---------~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~~a~~l~ 150 (209)
..|.|+||+++|++|.+..++++|..+... ....++||+|+||++++...++.|.
T Consensus 243 sIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~---------~gG~v~nI~f~ni~m~~v~~pI~i~ 306 (394)
T PLN02155 243 SIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARP---------STGFVRNVFFQDLVMKNVENPIIID 306 (394)
T ss_pred EeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCC---------CCEEEEEEEEEeEEEcCccccEEEE
Confidence 135699999999999999999999874221 1357999999999999987777664
No 12
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.07 E-value=6.2e-09 Score=96.93 Aligned_cols=122 Identities=19% Similarity=0.143 Sum_probs=93.6
Q ss_pred eeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCC-CEEEEEEeeeCCC
Q 036907 9 HYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSG-GIFNARTKIDKGR 87 (209)
Q Consensus 9 Idi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g-~i~nVrIKt~~g~ 87 (209)
+++..|+||+|++.+|.+..+ .++.+|+... .++||+|+||.+..+ +.+|+|++.... .|+|+.+ .+|.
T Consensus 164 i~i~~c~nV~i~~l~I~ap~~------spNTDGIDi~-~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c--~~GH 233 (456)
T PLN03003 164 IHISECNYVTISSLRINAPES------SPNTDGIDVG-ASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDC--GPGH 233 (456)
T ss_pred EEEeccccEEEEEEEEeCCCC------CCCCCcEeec-CcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEE--ECCC
Confidence 677889999999999988542 3566777654 379999999999988 899999986422 3555532 2222
Q ss_pred ------------CceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccCCCeEEE
Q 036907 88 ------------GGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRA 150 (209)
Q Consensus 88 ------------gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~~a~~l~ 150 (209)
.+.|+||+++|++|.+..++++|....+ ....++||+|+||++.+...++.|.
T Consensus 234 GISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~pI~Id 298 (456)
T PLN03003 234 GISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVENPIIID 298 (456)
T ss_pred CeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccceEEEE
Confidence 1459999999999999999999997532 1347999999999999887777665
No 13
>PLN03010 polygalacturonase
Probab=99.05 E-value=8e-09 Score=95.21 Aligned_cols=122 Identities=20% Similarity=0.177 Sum_probs=89.9
Q ss_pred eeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCC-CEEEEEEeeeCC-
Q 036907 9 HYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSG-GIFNARTKIDKG- 86 (209)
Q Consensus 9 Idi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g-~i~nVrIKt~~g- 86 (209)
+++..|++|+|++.+|.+-.+ +++.+|+... .++||+|+||++..+ +.+|+|.+.... .|+++.. ..|
T Consensus 183 i~i~~~~nv~i~~i~I~a~~~------s~NTDGiDi~-~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C--~~gH 252 (409)
T PLN03010 183 ISIKTCNYVAISKINILAPET------SPNTDGIDIS-YSTNINIFDSTIQTG-DDCIAINSGSSNINITQINC--GPGH 252 (409)
T ss_pred EEEeccccEEEEEEEEeCCCC------CCCCCceeee-ccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEe--ECcC
Confidence 556677788888887776432 3566777654 379999999999988 899999986422 2444422 122
Q ss_pred --------CC---ceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccCCCeEEE
Q 036907 87 --------RG---GNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRA 150 (209)
Q Consensus 87 --------~g---G~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~~a~~l~ 150 (209)
.+ ..|+||+|+|++|.+..++++|....+. ...++||+|+||++.....++.|.
T Consensus 253 GisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~----------~G~v~nItf~nI~m~~v~~pI~I~ 317 (409)
T PLN03010 253 GISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGG----------QGYARNISFENITLINTKNPIIID 317 (409)
T ss_pred CEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCC----------CEEEEEeEEEeEEEecCCccEEEE
Confidence 11 4599999999999999999999875321 347999999999999987776664
No 14
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.05 E-value=9.8e-09 Score=94.54 Aligned_cols=126 Identities=21% Similarity=0.202 Sum_probs=91.4
Q ss_pred eeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCC-CEEEEEE------
Q 036907 9 HYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSG-GIFNART------ 81 (209)
Q Consensus 9 Idi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g-~i~nVrI------ 81 (209)
+++..|+||+|++.+|.+--+ +++.+|+... .++||+|+||++..+ +.+|+|++.... .|+|+..
T Consensus 181 i~~~~~~~v~i~~v~I~~~~~------spNtDGidi~-~s~nV~I~n~~I~~G-DDcIaiksg~~nI~I~n~~c~~ghGi 252 (404)
T PLN02188 181 IALVECRNFKGSGLKISAPSD------SPNTDGIHIE-RSSGVYISDSRIGTG-DDCISIGQGNSQVTITRIRCGPGHGI 252 (404)
T ss_pred EEEEccccEEEEEEEEeCCCC------CCCCCcEeee-CcccEEEEeeEEeCC-CcEEEEccCCccEEEEEEEEcCCCcE
Confidence 567788888888888887322 3556676543 379999999999988 889999875432 2455522
Q ss_pred eeeC-C---CCceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccCCCeEEE
Q 036907 82 KIDK-G---RGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRA 150 (209)
Q Consensus 82 Kt~~-g---~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~~a~~l~ 150 (209)
+... | ..+.|+||+|+|++|.+..++++|...... + ....++||+|+||++.+...++.|.
T Consensus 253 siGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~-~-------~~G~v~nI~f~ni~m~~v~~pI~i~ 317 (404)
T PLN02188 253 SVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS-P-------GKSAATNMTFENIVMNNVTNPIIID 317 (404)
T ss_pred EeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC-C-------CceEEEEEEEEeEEecCccceEEEE
Confidence 2111 1 125699999999999999999999874321 1 1347999999999999987776664
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=98.98 E-value=8.2e-09 Score=92.34 Aligned_cols=124 Identities=21% Similarity=0.162 Sum_probs=90.5
Q ss_pred eeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccC-CCEEEEEEeee---
Q 036907 9 HYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMS-GGIFNARTKID--- 84 (209)
Q Consensus 9 Idi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~-g~i~nVrIKt~--- 84 (209)
+++..|+||.|++.+|.+..+. .+.+|+... .++||+|+||.+... +-+|+|.+... =.|+|+.+...
T Consensus 118 ~~~~~~~nv~i~~i~I~~~~~~------~NtDGid~~-~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~ghGi 189 (326)
T PF00295_consen 118 IHINDCDNVTISNITINNPANS------PNTDGIDID-SSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSGGHGI 189 (326)
T ss_dssp EEEESEEEEEEESEEEEEGGGC------TS--SEEEE-SEEEEEEESEEEESS-SESEEESSEECEEEEESEEEESSSEE
T ss_pred EEEEccCCeEEcceEEEecCCC------CCcceEEEE-eeeEEEEEEeecccc-cCcccccccccceEEEeEEEeccccc
Confidence 6777899999999999875432 444555543 389999999999987 78999998653 12444433221
Q ss_pred ----CCCCc---eEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccCCCeEEE
Q 036907 85 ----KGRGG---NIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIKAPVRA 150 (209)
Q Consensus 85 ----~g~gG---~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~~a~~l~ 150 (209)
.+.++ .|+||+|+|++|.+..+++.|..... ....|+||+|+||+++....++.+.
T Consensus 190 siGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~----------~~G~v~nI~f~ni~~~~v~~pi~i~ 252 (326)
T PF00295_consen 190 SIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG----------GGGYVSNITFENITMENVKYPIFID 252 (326)
T ss_dssp EEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT----------TSEEEEEEEEEEEEEEEESEEEEEE
T ss_pred eeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc----------cceEEeceEEEEEEecCCceEEEEE
Confidence 12233 59999999999999999999987421 2458999999999999887666654
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.34 E-value=4.8e-06 Score=78.45 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=63.0
Q ss_pred CCCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCe--EEEccccCCCEEEEEE
Q 036907 4 KMKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSG--VGIGSEMSGGIFNART 81 (209)
Q Consensus 4 ~NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~G--IsIGSe~~g~i~nVrI 81 (209)
.|||||.+. ++=+|+||++.+.||+|-+- -+++.|+||++|.. .+| |-+|-
T Consensus 371 ~qtDGi~ly--~nS~i~dcF~h~nDD~iKlY-------------hS~v~v~~~ViWk~-~Ngpiiq~GW----------- 423 (582)
T PF03718_consen 371 FQTDGIELY--PNSTIRDCFIHVNDDAIKLY-------------HSNVSVSNTVIWKN-ENGPIIQWGW----------- 423 (582)
T ss_dssp TT----B----TT-EEEEEEEEESS-SEE---------------STTEEEEEEEEEE--SSS-SEE--C-----------
T ss_pred eccCCcccc--CCCeeeeeEEEecCchhhee-------------ecCcceeeeEEEec-CCCCeEEeec-----------
Confidence 489999997 67777999999999998443 27999999999964 333 33332
Q ss_pred eeeCCCCceEEEEEEEEEEEeeccc---------cEEEe-ecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccCC-CeEEE
Q 036907 82 KIDKGRGGNIENITIRYIKMERVKI---------PIRIG-RGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIK-APVRA 150 (209)
Q Consensus 82 Kt~~g~gG~v~nI~f~nI~m~~v~~---------pI~i~-~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~~-a~~l~ 150 (209)
. ...+++|+|+|+.+...+. .|+-. .+|.+-.. .......-.|++++|+|+++.+... +++|.
T Consensus 424 ---~--pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s-~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~ 497 (582)
T PF03718_consen 424 ---T--PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMAS-TKTADPSTTIRNMTFSNVRCEGMCPCLFRIY 497 (582)
T ss_dssp ---S-----EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SS-S--BEEEEEEEEEEEEEEEEECCE-ECEEE-
T ss_pred ---c--ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccC-CCCCCcccceeeEEEEeEEEecccceeEEEe
Confidence 1 2468999999999876421 23333 35532111 1011112289999999999998765 44543
No 17
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=98.07 E-value=3.4e-05 Score=73.39 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=84.4
Q ss_pred eeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCC-------EEEE-
Q 036907 8 KHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGG-------IFNA- 79 (209)
Q Consensus 8 GIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~-------i~nV- 79 (209)
++|+..|+|++++|.+|.+-++- +.+|+... .|+|++|++|++..+ ...|.|=|-.... -+||
T Consensus 263 ~~h~~~~~nl~~~nl~I~~~~~~-------NtDG~d~~-sc~NvlI~~~~fdtg-DD~I~iksg~~~~~~~~~~~~~~i~ 333 (542)
T COG5434 263 TVHPVDCDNLTFRNLTIDANRFD-------NTDGFDPG-SCSNVLIEGCRFDTG-DDCIAIKSGAGLDGKKGYGPSRNIV 333 (542)
T ss_pred EEeeecccCceecceEEECCCCC-------CCCccccc-cceeEEEeccEEecC-CceEEeecccCCcccccccccccEE
Confidence 57788888888888888875442 33444332 499999999999976 6777776632221 2344
Q ss_pred ----EEeeeCC-------CCceEEEEEEEEEEEeeccccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccC
Q 036907 80 ----RTKIDKG-------RGGNIENITIRYIKMERVKIPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTI 144 (209)
Q Consensus 80 ----rIKt~~g-------~gG~v~nI~f~nI~m~~v~~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~ 144 (209)
++-+..| -+|-|+||++||..|.+..++|.|...... ...++||+|+++++....
T Consensus 334 i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~----------gG~v~nI~~~~~~~~nv~ 399 (542)
T COG5434 334 IRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGR----------GGGVRNIVFEDNKMRNVK 399 (542)
T ss_pred EecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeeccc----------ceeEEEEEEecccccCcc
Confidence 2222222 247899999999999999999999876432 258999999999998873
No 18
>smart00656 Amb_all Amb_all domain.
Probab=96.85 E-value=0.0031 Score=52.47 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=47.7
Q ss_pred CCCceeeecCcccEEEEeeEEEcC----------CceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccc
Q 036907 4 KMKRKHYTDLSTNVCIEDCYIESG----------NDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSE 71 (209)
Q Consensus 4 ~NtDGIdi~~s~nV~I~nc~I~tg----------DDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe 71 (209)
.+.|+|.+..+++|.|.+|++..+ |.++.+|.+ +.+|+|++|.|... .-+.-||+.
T Consensus 58 ~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~-----------s~~vTvs~~~f~~h-~~~~liG~~ 123 (190)
T smart00656 58 SDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNG-----------STYVTISNNYFHNH-WKVMLLGHS 123 (190)
T ss_pred CCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcc-----------cccEEEECceEecC-CEEEEEccC
Confidence 367999999999999999999987 677788875 79999999999865 567888874
No 19
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=96.50 E-value=0.01 Score=45.58 Aligned_cols=62 Identities=24% Similarity=0.273 Sum_probs=43.5
Q ss_pred ceeeecCcccEEEEeeEEEc-CCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCCEEEEEE
Q 036907 7 RKHYTDLSTNVCIEDCYIES-GNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNART 81 (209)
Q Consensus 7 DGIdi~~s~nV~I~nc~I~t-gDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~i~nVrI 81 (209)
|||.+....++.|++|+|.. +.++|.+... ..++|+||++... ..||.+.......+++..+
T Consensus 1 ~Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~------------~~~~i~n~~i~~~-~~gi~~~~~~~~~i~~~~~ 63 (158)
T PF13229_consen 1 DGISINNGSNVTIRNCTISNNGGDGIHVSGS------------SNITIENCTISNG-GYGIYVSGGSNVTISNNTI 63 (158)
T ss_dssp -CEEETTCEC-EEESEEEESSSSECEEE-SS------------CESEEES-EEESS-TTSEEEECCES-EEES-EE
T ss_pred CEEEEECCcCeEEeeeEEEeCCCeEEEEEcC------------CCeEEECeEEECC-CcEEEEecCCCeEEECeEE
Confidence 79999999999999999997 7889998875 4588888888873 6888887543334444433
No 20
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=96.09 E-value=0.027 Score=43.21 Aligned_cols=95 Identities=24% Similarity=0.232 Sum_probs=60.0
Q ss_pred CCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCCEEEEEEeee
Q 036907 5 MKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTKID 84 (209)
Q Consensus 5 NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~i~nVrIKt~ 84 (209)
..+||.+..+..++|++|+|..+...|.+... .++++++|++... ..|+.+-......+++.+|+..
T Consensus 22 ~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~~------------~~~~i~~~~~~~~-~~~i~~~~~~~~~i~~~~i~~~ 88 (158)
T PF13229_consen 22 GGDGIHVSGSSNITIENCTISNGGYGIYVSGG------------SNVTISNNTISDN-GSGIYVSGSSNITIENNRIENN 88 (158)
T ss_dssp SSECEEE-SSCESEEES-EEESSTTSEEEECC------------ES-EEES-EEES--SEEEECCS-CS-EEES-EEECS
T ss_pred CCeEEEEEcCCCeEEECeEEECCCcEEEEecC------------CCeEEECeEEEEc-cceEEEEecCCceecCcEEEcC
Confidence 57899999999999999999998788888764 7999999999975 3466655333334555566654
Q ss_pred CCCC---ce-EEEEEEEEEEEeecc-ccEEEee
Q 036907 85 KGRG---GN-IENITIRYIKMERVK-IPIRIGR 112 (209)
Q Consensus 85 ~g~g---G~-v~nI~f~nI~m~~v~-~pI~i~~ 112 (209)
.+.| .. ..++++++-++.+.. .++.+..
T Consensus 89 ~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 89 GDYGIYISNSSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp SS-SCE-TCEECS-EEES-EEECCTTSSCEEEE
T ss_pred CCccEEEeccCCCEEEEeEEEEeCcceeEEEEC
Confidence 4333 12 567888888888765 5555554
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=96.02 E-value=0.031 Score=49.96 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=9.3
Q ss_pred eeeEEEEeEEEeCCCCCeEEEc
Q 036907 48 SSNITMRRVSGTTPTYSGVGIG 69 (209)
Q Consensus 48 ~~nI~V~n~~~~~~~~~GIsIG 69 (209)
+++++|++|++.+....||-++
T Consensus 115 s~~v~I~~n~i~g~~d~GIyv~ 136 (314)
T TIGR03805 115 STNVLVEDSYVRGASDAGIYVG 136 (314)
T ss_pred cCCEEEECCEEECCCcccEEEC
Confidence 3444444444443322344443
No 22
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=95.99 E-value=0.13 Score=45.99 Aligned_cols=52 Identities=29% Similarity=0.351 Sum_probs=40.2
Q ss_pred CCceeeecCcccEEEEeeEEEcC-CceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEc
Q 036907 5 MKRKHYTDLSTNVCIEDCYIESG-NDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIG 69 (209)
Q Consensus 5 NtDGIdi~~s~nV~I~nc~I~tg-DDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIG 69 (209)
..+||.+..|++++|++|+++.. |+.|.++. +++++|+|++++.. ..||-+-
T Consensus 106 ~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~------------s~~~~v~nN~~~~n-~~GI~i~ 158 (314)
T TIGR03805 106 GAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ------------SQNIVVRNNVAEEN-VAGIEIE 158 (314)
T ss_pred CcceEEEeccCCEEEECCEEECCCcccEEECC------------CCCeEEECCEEccC-cceEEEE
Confidence 36899999999999999999984 55788774 47788888877754 4566654
No 23
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.24 E-value=0.02 Score=47.96 Aligned_cols=76 Identities=26% Similarity=0.277 Sum_probs=49.8
Q ss_pred CCceeeecCcccEEEEeeEEEcC---------CceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCC
Q 036907 5 MKRKHYTDLSTNVCIEDCYIESG---------NDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGG 75 (209)
Q Consensus 5 NtDGIdi~~s~nV~I~nc~I~tg---------DDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~ 75 (209)
..|+|.+..++||.|.+|++..+ |..+.+|.+ +.+|+|++|.+... ..+.-+|+....
T Consensus 74 ~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~-----------s~~vTiS~n~f~~~-~k~~l~G~~d~~- 140 (200)
T PF00544_consen 74 DGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKG-----------SDNVTISNNIFDNH-NKTMLIGSSDSN- 140 (200)
T ss_dssp S--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESS-----------TEEEEEES-EEEEE-EETCEESSCTTC-
T ss_pred CCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeC-----------CceEEEEchhcccc-ccccccCCCCCc-
Confidence 56899999999999999999866 667777765 78999999999864 345557763211
Q ss_pred EEEEEEeeeCCCCceEEEEEEEEEEEeec
Q 036907 76 IFNARTKIDKGRGGNIENITIRYIKMERV 104 (209)
Q Consensus 76 i~nVrIKt~~g~gG~v~nI~f~nI~m~~v 104 (209)
. ...| .+|+|-+-...++
T Consensus 141 ~---------~~~~--~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 141 S---------TDRG--LRVTFHHNYFANT 158 (200)
T ss_dssp G---------GGTT--EEEEEES-EEEEE
T ss_pred c---------ccCC--ceEEEEeEEECch
Confidence 0 1223 6777777766654
No 24
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=94.78 E-value=0.31 Score=39.79 Aligned_cols=21 Identities=33% Similarity=0.257 Sum_probs=12.6
Q ss_pred EEEEEEEEEEee-ccccEEEee
Q 036907 92 ENITIRYIKMER-VKIPIRIGR 112 (209)
Q Consensus 92 ~nI~f~nI~m~~-v~~pI~i~~ 112 (209)
++++++|...++ ....|.+..
T Consensus 185 ~~~~i~n~~~~~~~~~gi~i~~ 206 (225)
T PF12708_consen 185 NNITISNNTFEGNCGNGINIEG 206 (225)
T ss_dssp EEEEEECEEEESSSSESEEEEE
T ss_pred ceEEEEeEEECCccceeEEEEC
Confidence 466666666665 345665554
No 25
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=94.07 E-value=0.48 Score=39.83 Aligned_cols=63 Identities=22% Similarity=0.161 Sum_probs=45.9
Q ss_pred ceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCCEEEEEEe
Q 036907 7 RKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTK 82 (209)
Q Consensus 7 DGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~i~nVrIK 82 (209)
+||.+..++++.|++..+....|.|.+.. +.+++|+++++... ..||.+-......|++-.++
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~~~gi~~~~------------s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~ 76 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNSRDGIYVEN------------SDNNTISNNTISNN-RYGIHLMGSSNNTIENNTIS 76 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeCCCEEEEEE------------cCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEE
Confidence 78899988999999999998888886554 47888888888765 67777655433345544333
No 26
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=93.82 E-value=0.52 Score=39.60 Aligned_cols=94 Identities=18% Similarity=0.082 Sum_probs=58.5
Q ss_pred CCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCCEEEEEEeee
Q 036907 5 MKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTKID 84 (209)
Q Consensus 5 NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~i~nVrIKt~ 84 (209)
..|||-+..+.+++|++++|......|.+.. +++.+|+++++... ..||.+.......|++-+|+-.
T Consensus 34 ~~~gi~~~~s~~~~I~~n~i~~~~~GI~~~~------------s~~~~i~~n~i~~n-~~Gi~l~~s~~~~I~~N~i~~n 100 (236)
T PF05048_consen 34 SRDGIYVENSDNNTISNNTISNNRYGIHLMG------------SSNNTIENNTISNN-GYGIYLMGSSNNTISNNTISNN 100 (236)
T ss_pred CCCEEEEEEcCCeEEEeeEEECCCeEEEEEc------------cCCCEEEeEEEEcc-CCCEEEEcCCCcEEECCEecCC
Confidence 5688888888888888888888877777775 36688888888765 4777776543334444444332
Q ss_pred CCCC---ceEEEEEEEEEEEeeccccEEEee
Q 036907 85 KGRG---GNIENITIRYIKMERVKIPIRIGR 112 (209)
Q Consensus 85 ~g~g---G~v~nI~f~nI~m~~v~~pI~i~~ 112 (209)
.. | ....+.++++-++.+-..+|.+..
T Consensus 101 ~~-GI~l~~s~~~~I~~N~i~~~~~GI~l~~ 130 (236)
T PF05048_consen 101 GY-GIYLYGSSNNTISNNTISNNGYGIYLSS 130 (236)
T ss_pred Cc-eEEEeeCCceEEECcEEeCCCEEEEEEe
Confidence 22 1 112334455555555555665554
No 27
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=93.54 E-value=0.16 Score=44.59 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=36.8
Q ss_pred cCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCCEE--EEEEeeeCCCCc
Q 036907 12 DLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIF--NARTKIDKGRGG 89 (209)
Q Consensus 12 ~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~i~--nVrIKt~~g~gG 89 (209)
+.++||.|+|+.+.+.| +-|. ++||+|.+.++.+- =+.==| ..++ |.+|...+|- -
T Consensus 153 q~~kNvei~ns~l~sKD------AFWn---------~eNVtVyDS~i~GE---YLgW~S---kNltliNC~I~g~QpL-C 210 (277)
T PF12541_consen 153 QYCKNVEIHNSKLDSKD------AFWN---------CENVTVYDSVINGE---YLGWNS---KNLTLINCTIEGTQPL-C 210 (277)
T ss_pred eceeeEEEEccEEeccc------cccc---------CCceEEEcceEeee---EEEEEc---CCeEEEEeEEeccCcc-E
Confidence 45666667776666665 2232 56666666666532 110000 1111 1133333322 5
Q ss_pred eEEEEEEEEEEEeecccc
Q 036907 90 NIENITIRYIKMERVKIP 107 (209)
Q Consensus 90 ~v~nI~f~nI~m~~v~~p 107 (209)
|++|++.+|.+|.+...+
T Consensus 211 Y~~~L~l~nC~~~~tdla 228 (277)
T PF12541_consen 211 YCDNLVLENCTMIDTDLA 228 (277)
T ss_pred eecceEEeCcEeecceee
Confidence 677777777777755444
No 28
>smart00656 Amb_all Amb_all domain.
Probab=92.51 E-value=0.94 Score=37.57 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=33.4
Q ss_pred eeeecCcccEEEEeeEEEcC-------CceEEEccCCCcCCcccCCceeeEEEEeEEEeCC
Q 036907 8 KHYTDLSTNVCIEDCYIESG-------NDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTP 61 (209)
Q Consensus 8 GIdi~~s~nV~I~nc~I~tg-------DDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~ 61 (209)
|+.+..++||.|+|.+|+.+ .|+|.+-. +++|.|.+|++...
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~------------~~~VwIDHct~s~~ 81 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDG------------SSNVWIDHVSLSGC 81 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeC------------CCeEEEEccEeEcc
Confidence 67787789999999999975 35666532 68999999999964
No 29
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=92.43 E-value=0.75 Score=37.48 Aligned_cols=68 Identities=25% Similarity=0.353 Sum_probs=42.8
Q ss_pred eeeecC-cccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCCEEEEEEeeeCC
Q 036907 8 KHYTDL-STNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGGIFNARTKIDKG 86 (209)
Q Consensus 8 GIdi~~-s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~i~nVrIKt~~g 86 (209)
|+.+.. +.++.+.++++..+++.+ .-+ .++++|+||++.....+||.+-..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~g~--~~~-----------~~~~~i~n~~~~~~~~~gi~i~~~--------------- 207 (225)
T PF12708_consen 156 GIFIDNGSNNVIVNNCIFNGGDNGI--ILG-----------NNNITISNNTFEGNCGNGINIEGG--------------- 207 (225)
T ss_dssp EEEEESCEEEEEEECEEEESSSCSE--ECE-----------EEEEEEECEEEESSSSESEEEEEC---------------
T ss_pred eeeeccceeEEEECCccccCCCcee--Eee-----------cceEEEEeEEECCccceeEEEECC---------------
Confidence 444443 344566777777777762 222 378899999888633677776431
Q ss_pred CCceEEEEEEEEEEEeeccccE
Q 036907 87 RGGNIENITIRYIKMERVKIPI 108 (209)
Q Consensus 87 ~gG~v~nI~f~nI~m~~v~~pI 108 (209)
.++.++|+++++...+|
T Consensus 208 -----~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 -----SNIIISNNTIENCDDGI 224 (225)
T ss_dssp -----SEEEEEEEEEESSSEEE
T ss_pred -----eEEEEEeEEEECCccCc
Confidence 33777777777766554
No 30
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=92.31 E-value=0.67 Score=40.72 Aligned_cols=14 Identities=29% Similarity=0.161 Sum_probs=8.3
Q ss_pred eeeEEEEeEEEeCC
Q 036907 48 SSNITMRRVSGTTP 61 (209)
Q Consensus 48 ~~nI~V~n~~~~~~ 61 (209)
++++.|+||++...
T Consensus 57 ~~~~~i~~~~f~~~ 70 (277)
T PF12541_consen 57 SDNIKIENCYFTEM 70 (277)
T ss_pred ECCeEEEeeEEeec
Confidence 56666666666543
No 31
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=91.51 E-value=1.1 Score=37.31 Aligned_cols=72 Identities=18% Similarity=0.145 Sum_probs=47.5
Q ss_pred eeeec-CcccEEEEeeEEEc----------------CCceEEEccCCCcCCcccCCceeeEEEEeEEEeCC--------C
Q 036907 8 KHYTD-LSTNVCIEDCYIES----------------GNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTP--------T 62 (209)
Q Consensus 8 GIdi~-~s~nV~I~nc~I~t----------------gDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~--------~ 62 (209)
|+.+. .++||.|+|..|+. +.|+|.|.. ++||.|.+|++... .
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~------------~~nVWIDH~sfs~~~~~~~~~~~ 105 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDN------------SSNVWIDHCSFSWGNFECNSDSS 105 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEES------------TEEEEEES-EEEETTS-GGGSSS
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEe------------cccEEEeccEEeccccccccccC
Confidence 77776 89999999999997 568888884 47999999999864 1
Q ss_pred CCeEEEccccCCCEEEEEEeeeCCCCceEEEEEEEEEEEeeccccEEE
Q 036907 63 YSGVGIGSEMSGGIFNARTKIDKGRGGNIENITIRYIKMERVKIPIRI 110 (209)
Q Consensus 63 ~~GIsIGSe~~g~i~nVrIKt~~g~gG~v~nI~f~nI~m~~v~~pI~i 110 (209)
...+.+. ....+||+++-.+.+......+
T Consensus 106 Dg~idi~-------------------~~s~~vTiS~n~f~~~~k~~l~ 134 (200)
T PF00544_consen 106 DGLIDIK-------------------KGSDNVTISNNIFDNHNKTMLI 134 (200)
T ss_dssp SSSEEEE-------------------SSTEEEEEES-EEEEEEETCEE
T ss_pred CceEEEE-------------------eCCceEEEEchhcccccccccc
Confidence 2222221 1247888888888876544333
No 32
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=91.43 E-value=2.8 Score=35.82 Aligned_cols=29 Identities=14% Similarity=0.120 Sum_probs=25.1
Q ss_pred CceeeecCcccEEEEeeEEEc-CCceEEEccC
Q 036907 6 KRKHYTDLSTNVCIEDCYIES-GNDLVAVKKG 36 (209)
Q Consensus 6 tDGIdi~~s~nV~I~nc~I~t-gDDcIaiKsg 36 (209)
.||||..+ +-+|+|++... ++|++++|..
T Consensus 75 ~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~ 104 (215)
T PF03211_consen 75 ADGIHCKG--SCTLENVWWEDVCEDAATFKGD 104 (215)
T ss_dssp TT-EEEES--CEEEEEEEESS-SSESEEEESS
T ss_pred cCceEEcC--CEEEEEEEecccceeeeEEcCC
Confidence 49999987 89999999986 9999999986
No 33
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=89.08 E-value=9.9 Score=36.74 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=48.0
Q ss_pred CCceeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEeCC--------CCCeEEEccccCCCE
Q 036907 5 MKRKHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTP--------TYSGVGIGSEMSGGI 76 (209)
Q Consensus 5 NtDGIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~--------~~~GIsIGSe~~g~i 76 (209)
|.|+|.+.. ++|.|+||+|--..-.=.|.-||.+ +..+||.|+|+.+-.. ...||---|-...+.
T Consensus 392 nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~p------r~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~ 464 (582)
T PF03718_consen 392 NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTP------RNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDM 464 (582)
T ss_dssp SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---------EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-
T ss_pred cCchhheee-cCcceeeeEEEecCCCCeEEeeccc------cccCceEEeeeEEEeeeeecccCCCCceeEecccccccc
Confidence 789999886 8999999999874333335555543 4478999999966522 012332211111000
Q ss_pred EEEEEeeeCCCCceEEEEEEEEEEEeeccc-cEEE
Q 036907 77 FNARTKIDKGRGGNIENITIRYIKMERVKI-PIRI 110 (209)
Q Consensus 77 ~nVrIKt~~g~gG~v~nI~f~nI~m~~v~~-pI~i 110 (209)
.=.+-++-.-.||+++|+|++++..-. .+.|
T Consensus 465 ---~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri 496 (582)
T PF03718_consen 465 ---ASTKTADPSTTIRNMTFSNVRCEGMCPCLFRI 496 (582)
T ss_dssp ---SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE
T ss_pred ---cCCCCCCcccceeeEEEEeEEEecccceeEEE
Confidence 000000111467899999999887543 3344
No 34
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=88.52 E-value=5.8 Score=35.76 Aligned_cols=43 Identities=16% Similarity=0.068 Sum_probs=31.3
Q ss_pred eeeecCcccEEEEeeEEEc-C-----CceEEEccCCCcCCcccCCceeeEEEEeEEEeCC
Q 036907 8 KHYTDLSTNVCIEDCYIES-G-----NDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTP 61 (209)
Q Consensus 8 GIdi~~s~nV~I~nc~I~t-g-----DDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~ 61 (209)
|+-+...+||.|+|.+|.- . +|.|.|-.+ ..||.|.+|+|..+
T Consensus 118 gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~-----------~~nIWIDH~tf~~~ 166 (345)
T COG3866 118 GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDD-----------GHNIWIDHNTFSGG 166 (345)
T ss_pred eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccC-----------CeEEEEEeeEeccc
Confidence 6667677888888888874 3 578888421 47888888888864
No 35
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=88.32 E-value=1.5 Score=39.42 Aligned_cols=76 Identities=20% Similarity=0.152 Sum_probs=56.4
Q ss_pred Cceeee-cCcccEEEEeeEEEc---------CCceEEEccCCCcCCcccCCceeeEEEEeEEEeCCCCCeEEEccccCCC
Q 036907 6 KRKHYT-DLSTNVCIEDCYIES---------GNDLVAVKKGWNHYGIAMARPSSNITMRRVSGTTPTYSGVGIGSEMSGG 75 (209)
Q Consensus 6 tDGIdi-~~s~nV~I~nc~I~t---------gDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~~~~~GIsIGSe~~g~ 75 (209)
-|+|.+ ..++|+.|++|++.. +|-.+-||-+ +..|+|+++.+... .-++-+|+-....
T Consensus 144 ~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~-----------AnyITiS~n~fhdh-~Kssl~G~sD~~~ 211 (345)
T COG3866 144 YDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKD-----------ANYITISYNKFHDH-DKSSLLGSSDSSN 211 (345)
T ss_pred CCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccC-----------CcEEEEEeeeeecC-CeeeeeccCCccc
Confidence 599999 899999999999998 4666667755 78999999999976 5677788753311
Q ss_pred EEEEEEeeeCCCCceEEEEEEEEEEEeec
Q 036907 76 IFNARTKIDKGRGGNIENITIRYIKMERV 104 (209)
Q Consensus 76 i~nVrIKt~~g~gG~v~nI~f~nI~m~~v 104 (209)
. . +--.+|+|.+-..++.
T Consensus 212 --------~--~-~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 212 --------Y--D-DGKYKVTIHHNYFKNL 229 (345)
T ss_pred --------c--c-CCceeEEEeccccccc
Confidence 0 1 2236677777777764
No 36
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=84.74 E-value=1.6 Score=27.08 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=32.7
Q ss_pred eeeecCcccEEEEeeEEEcCCceEEEccCCCcCCcccCCceeeEEEEeEEEe
Q 036907 8 KHYTDLSTNVCIEDCYIESGNDLVAVKKGWNHYGIAMARPSSNITMRRVSGT 59 (209)
Q Consensus 8 GIdi~~s~nV~I~nc~I~tgDDcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~ 59 (209)
||.+..+.+.+|++.+|....|+|.+-.. .+-+|++.++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~s------------~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTDS------------SNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEeC------------CCCEeECCEEE
Confidence 78999999999999999998889999864 55566666655
No 37
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=77.93 E-value=3.7 Score=38.77 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=40.2
Q ss_pred CCCCceeeecCcccEEEEeeEEEcCC-ceEEEccCCCcCCcccCCceeeEEEEeEEEeC
Q 036907 3 EKMKRKHYTDLSTNVCIEDCYIESGN-DLVAVKKGWNHYGIAMARPSSNITMRRVSGTT 60 (209)
Q Consensus 3 ~~NtDGIdi~~s~nV~I~nc~I~tgD-DcIaiKsg~~~~g~~~~~p~~nI~V~n~~~~~ 60 (209)
.-.-+||++..+.+|+|++-+|+..+ |+|-+.+. +|+.|++.+|..
T Consensus 236 ~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nss------------s~~~i~~N~~~~ 282 (455)
T TIGR03808 236 GQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSA------------SNIQITGNSVSD 282 (455)
T ss_pred CCccccEEEEccCCeEEECCEEeccccceEEEEcc------------cCcEEECcEeee
Confidence 44678999999999999999999999 99999984 788888887774
No 38
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=70.20 E-value=22 Score=33.63 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=8.1
Q ss_pred eeeecCcccEEEEeeEEE
Q 036907 8 KHYTDLSTNVCIEDCYIE 25 (209)
Q Consensus 8 GIdi~~s~nV~I~nc~I~ 25 (209)
||.+..|++|+|++|+|.
T Consensus 137 gI~v~~a~~v~Iedn~L~ 154 (455)
T TIGR03808 137 LIHCQGGRDVRITDCEIT 154 (455)
T ss_pred EEEEccCCceEEEeeEEE
Confidence 344444444444444444
No 39
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=63.91 E-value=11 Score=19.50 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=11.7
Q ss_pred ccEEEEeeEEEcCCc-eEEEcc
Q 036907 15 TNVCIEDCYIESGND-LVAVKK 35 (209)
Q Consensus 15 ~nV~I~nc~I~tgDD-cIaiKs 35 (209)
.+++|+++.|..... +|.++.
T Consensus 2 ~~~~i~~n~i~~~~~~Gi~i~~ 23 (26)
T smart00710 2 SNVTIENNTIRNNGGDGIYIGG 23 (26)
T ss_pred CCEEEECCEEEeCCCCcEEEec
Confidence 456666666665333 665554
No 40
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=49.59 E-value=2e+02 Score=26.82 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred EEEccCCCcCCcccCCceeeEEEEeE-EEeCCCCCeEEEccccCCCEEEEEEeeeCCCCc--eEEEEEEEEEEEeecc--
Q 036907 31 VAVKKGWNHYGIAMARPSSNITMRRV-SGTTPTYSGVGIGSEMSGGIFNARTKIDKGRGG--NIENITIRYIKMERVK-- 105 (209)
Q Consensus 31 IaiKsg~~~~g~~~~~p~~nI~V~n~-~~~~~~~~GIsIGSe~~g~i~nVrIKt~~g~gG--~v~nI~f~nI~m~~v~-- 105 (209)
|++.|+ ..|-+ .+.|.|+.+ ++. |+|-.|--.+.+++- +++-......| .+.+|+|.||+...-.
T Consensus 67 VaL~Pg-~~Y~i-----~~~V~I~~~cYIi---GnGA~V~v~~~~~~~-f~v~~~~~~P~V~gM~~VtF~ni~F~~~~~~ 136 (386)
T PF01696_consen 67 VALRPG-AVYVI-----RKPVNIRSCCYII---GNGATVRVNGPDRVA-FRVCMQSMGPGVVGMEGVTFVNIRFEGRDTF 136 (386)
T ss_pred EEeCCC-CEEEE-----eeeEEecceEEEE---CCCEEEEEeCCCCce-EEEEcCCCCCeEeeeeeeEEEEEEEecCCcc
Q ss_pred ccEEEeecCCCCCCCCCCCCCCCeEEeEEEEEEEEEccCC--CeEEEE
Q 036907 106 IPIRIGRGSNSHPDEGRDPKALPKIRGISFVNVVSVNTIK--APVRAG 151 (209)
Q Consensus 106 ~pI~i~~~y~~~~~~~~~~~~~~~I~nIt~~nI~gt~~~~--a~~l~g 151 (209)
.+++|...+.- .+.+..|.++.++-... ...+.|
T Consensus 137 ~g~~f~~~t~~------------~~hgC~F~gf~g~cl~~~~~~~VrG 172 (386)
T PF01696_consen 137 SGVVFHANTNT------------LFHGCSFFGFHGTCLESWAGGEVRG 172 (386)
T ss_pred ceeEEEecceE------------EEEeeEEecCcceeEEEcCCcEEee
No 41
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=37.86 E-value=93 Score=27.07 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=12.2
Q ss_pred eeEEEEeEEEeCCCCCeEEE
Q 036907 49 SNITMRRVSGTTPTYSGVGI 68 (209)
Q Consensus 49 ~nI~V~n~~~~~~~~~GIsI 68 (209)
.+.+|+||+|....++||.+
T Consensus 122 s~~tI~Nntf~~~~~~GI~v 141 (246)
T PF07602_consen 122 SSPTIANNTFTNNGREGIFV 141 (246)
T ss_pred CCcEEEeeEEECCccccEEE
Confidence 36667777766543556654
No 42
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=20.08 E-value=3.3e+02 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=11.0
Q ss_pred eeeecCcccEEEEeeEEEc-CCceEEE
Q 036907 8 KHYTDLSTNVCIEDCYIES-GNDLVAV 33 (209)
Q Consensus 8 GIdi~~s~nV~I~nc~I~t-gDDcIai 33 (209)
||.+.++ +.+|+||+|.. +-+.|.+
T Consensus 116 Gi~Iess-~~tI~Nntf~~~~~~GI~v 141 (246)
T PF07602_consen 116 GIWIESS-SPTIANNTFTNNGREGIFV 141 (246)
T ss_pred EEEEecC-CcEEEeeEEECCccccEEE
Confidence 3444433 55555555543 2334443
Done!