Query 036908
Match_columns 72
No_of_seqs 126 out of 1061
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15425 gapA glyceraldehyde-3 100.0 3.9E-34 8.5E-39 205.1 5.5 70 1-70 262-331 (331)
2 PTZ00023 glyceraldehyde-3-phos 100.0 5E-34 1.1E-38 205.0 5.7 71 1-71 266-336 (337)
3 PRK07729 glyceraldehyde-3-phos 100.0 7.1E-34 1.5E-38 204.6 5.4 71 1-71 263-333 (343)
4 PRK07403 glyceraldehyde-3-phos 100.0 1.6E-33 3.5E-38 202.4 6.1 71 1-71 265-335 (337)
5 PLN02237 glyceraldehyde-3-phos 100.0 2.4E-33 5.1E-38 206.8 6.4 71 1-71 341-411 (442)
6 PLN02358 glyceraldehyde-3-phos 100.0 2.1E-33 4.5E-38 201.7 5.7 70 1-70 268-337 (338)
7 PRK08955 glyceraldehyde-3-phos 100.0 2.5E-33 5.4E-38 201.1 5.3 71 2-72 264-334 (334)
8 PLN02272 glyceraldehyde-3-phos 100.0 3.4E-33 7.4E-38 205.1 5.8 71 1-71 347-417 (421)
9 PRK13535 erythrose 4-phosphate 100.0 4E-33 8.7E-38 200.2 5.9 70 1-70 265-334 (336)
10 PLN03096 glyceraldehyde-3-phos 100.0 5.7E-33 1.2E-37 202.8 6.4 70 1-70 323-392 (395)
11 PTZ00434 cytosolic glyceraldeh 100.0 5.5E-33 1.2E-37 200.9 5.6 71 1-71 280-354 (361)
12 PTZ00353 glycosomal glyceralde 100.0 5.5E-32 1.2E-36 194.8 5.8 70 1-71 266-336 (342)
13 TIGR01532 E4PD_g-proteo D-eryt 100.0 1.4E-31 3.1E-36 191.3 3.8 63 1-63 263-325 (325)
14 TIGR01534 GAPDH-I glyceraldehy 100.0 2.7E-30 5.9E-35 185.0 4.4 63 1-63 263-327 (327)
15 PRK08289 glyceraldehyde-3-phos 100.0 7.1E-30 1.5E-34 189.5 5.0 69 2-71 401-471 (477)
16 COG0057 GapA Glyceraldehyde-3- 99.9 1.5E-26 3.2E-31 166.1 6.4 70 1-70 263-332 (335)
17 PF02800 Gp_dh_C: Glyceraldehy 99.7 3.4E-18 7.4E-23 111.8 2.4 50 2-51 108-157 (157)
18 KOG0657 Glyceraldehyde 3-phosp 99.6 1.7E-16 3.8E-21 111.9 2.6 40 1-71 246-285 (285)
19 KOG3896 Dynactin, subunit p62 37.5 19 0.00042 27.2 1.3 29 42-70 122-150 (449)
20 PF13540 RCC1_2: Regulator of 28.2 57 0.0012 15.1 1.7 11 46-56 19-29 (30)
21 KOG1469 Predicted acyl-CoA deh 27.6 35 0.00077 25.3 1.2 39 4-43 110-148 (392)
22 PRK10943 cold shock-like prote 23.5 59 0.0013 18.2 1.4 11 47-57 7-17 (69)
23 cd01755 PLAT_lipase PLAT/ LH2 22.3 1.7E+02 0.0036 17.9 3.4 28 25-55 45-72 (120)
24 PRK09507 cspE cold shock prote 21.9 67 0.0015 17.9 1.5 11 47-57 7-17 (69)
25 PHA02106 hypothetical protein 20.5 2.3 4.9E-05 25.4 -5.0 16 46-61 10-25 (91)
26 cd06095 RP_RTVL_H_like Retrope 20.4 69 0.0015 18.1 1.3 21 20-40 2-22 (86)
No 1
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=3.9e-34 Score=205.14 Aligned_cols=70 Identities=71% Similarity=1.155 Sum_probs=67.0
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhh
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 70 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~ 70 (72)
+||+|+|||||+|+|+|+||+||+|+|||||||+.+|++++++++|+++||||||||++||+|++++|++
T Consensus 262 ~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~ 331 (331)
T PRK15425 262 AAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331 (331)
T ss_pred HHhhccccccccccCCcEeeeecCCCCcceEEEcccCEEecCCEEEEEEEecCchhHHHHHHHHHHHHhC
Confidence 3678999999999999999999999999999999999999999999999999999999999999999864
No 2
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=5e-34 Score=204.97 Aligned_cols=71 Identities=68% Similarity=1.141 Sum_probs=68.1
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhhc
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 71 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~~ 71 (72)
+||+|+|||||+|+++|+||+||+|+|||+|||+.+|++++++++|+++||||||||++||+|++.+|+++
T Consensus 266 ~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~~ 336 (337)
T PTZ00023 266 KAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDNEWGYSNRLLDLAHYITQK 336 (337)
T ss_pred HHhcccccCCcCccCCCeeeeecCCCCCCeEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHhhc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999865
No 3
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=7.1e-34 Score=204.60 Aligned_cols=71 Identities=42% Similarity=0.839 Sum_probs=67.8
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhhc
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 71 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~~ 71 (72)
+|++|+|||||+|+++|+||+||+|+|||+|||+.+|++++++++|+++||||||||++||+||+++|+++
T Consensus 263 ~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDNE~Gys~r~~dl~~~~~~~ 333 (343)
T PRK07729 263 TAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSCRVVDLVTLVADE 333 (343)
T ss_pred HHhhCchhhccCccCCCccccccCCCCcceEEEcccCeEecCCEEEEEEEecCchHHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999764
No 4
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.6e-33 Score=202.40 Aligned_cols=71 Identities=48% Similarity=0.853 Sum_probs=67.8
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhhc
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 71 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~~ 71 (72)
+||+++|||||+|+++|+||+||+|+|||+|||+.+|++++++++|+++||||||||++||+||+++|+++
T Consensus 265 ~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyDNE~Gys~r~~dl~~~~~~~ 335 (337)
T PRK07403 265 DASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAELVARK 335 (337)
T ss_pred HHhhCccccccCeecCCEeeeeecCCCCCEEEEcccCEEecCCEEEEEEEecCchhHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999763
No 5
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=99.98 E-value=2.4e-33 Score=206.81 Aligned_cols=71 Identities=44% Similarity=0.738 Sum_probs=68.0
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhhc
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 71 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~~ 71 (72)
+|++|+|||||+|+|+|+||+||+|+|||+|||+.+|++++++++|+++||||||||++||+||+.+|+++
T Consensus 341 ~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~aWYDNEwGys~R~~dl~~~~~~~ 411 (442)
T PLN02237 341 KAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAK 411 (442)
T ss_pred HhhccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEEEEeCCchhHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999763
No 6
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=99.98 E-value=2.1e-33 Score=201.75 Aligned_cols=70 Identities=94% Similarity=1.418 Sum_probs=67.0
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhh
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 70 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~ 70 (72)
+|++++|||||+|+|+|+||+||+|+|||+|||+.+|++++++++|+++||||||||++||+||+++|.+
T Consensus 268 ~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vk~~~WyDNE~gys~r~~dl~~~~~~ 337 (338)
T PLN02358 268 EESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337 (338)
T ss_pred HHhhccccCcccccCCceeeeecCCCCcceEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999999999999999864
No 7
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.98 E-value=2.5e-33 Score=201.09 Aligned_cols=71 Identities=46% Similarity=0.824 Sum_probs=67.6
Q ss_pred CcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhhcC
Q 036908 2 ESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 72 (72)
Q Consensus 2 aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~~~ 72 (72)
|++|+|||||+|+|+|+||+||+|+|||+|||+.+|++++++++|+++||||||||++||+||+++|++.|
T Consensus 264 a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~dl~~~~~~~~ 334 (334)
T PRK08955 264 AAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNEWGYANRTAELARKVGLAD 334 (334)
T ss_pred hcCCCcCceeccccCCcccceeCCCCchHheehhcCEEecCCEEEEEEEeCCchhHHHHHHHHHHHHhcCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999997653
No 8
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=99.98 E-value=3.4e-33 Score=205.15 Aligned_cols=71 Identities=77% Similarity=1.234 Sum_probs=67.5
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhhc
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 71 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~~ 71 (72)
+|++|+|||||+|+|+|+||+||+|++||+|||+.+|++++++++|+++||||||||++||+||+.++++.
T Consensus 347 ~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~~vKv~~WYDNEwGys~R~~dl~~~~~~~ 417 (421)
T PLN02272 347 YASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 417 (421)
T ss_pred HHhccccccccccccCCEeeeecCCCCCcEEEEcccCeEecCCEEEEEEEecCchhHHHHHHHHHHHHHhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999998753
No 9
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=99.98 E-value=4e-33 Score=200.19 Aligned_cols=70 Identities=34% Similarity=0.663 Sum_probs=67.0
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhh
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 70 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~ 70 (72)
+|++|+|||||+|+++|+||+||+|+|||+|||+.+|++++++++|+++||||||||++||+||+.+|.+
T Consensus 265 ~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~ 334 (336)
T PRK13535 265 KAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAA 334 (336)
T ss_pred HhhhccccccccccCCCccccccCCCCcceEEEcccCEEECCCEEEEEEEEcCchHHHHHHHHHHHHHhh
Confidence 3678999999999999999999999999999999999999999999999999999999999999999865
No 10
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=99.98 E-value=5.7e-33 Score=202.77 Aligned_cols=70 Identities=43% Similarity=0.745 Sum_probs=67.4
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhh
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 70 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~ 70 (72)
+||+|+|||||+|+++|+||+||+++|||+|||+.+|++++++++|+++||||||||++||+||+++|++
T Consensus 323 ~aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~ 392 (395)
T PLN03096 323 DAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVAN 392 (395)
T ss_pred hhhhccccceEEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecCchhHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999999999999999999999999976
No 11
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=5.5e-33 Score=200.94 Aligned_cols=71 Identities=55% Similarity=1.012 Sum_probs=67.0
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeee----CCeEEEEEEeCCCCchhhhHHHHHHHhhhc
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALS----KKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 71 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~----~~~vki~~WyDNE~gy~~r~~dl~~~~~~~ 71 (72)
+||+++|||||+|+|+|+||+||+|+|||+|||+.+|++++ ++++|+++||||||||++||+||+.+|++.
T Consensus 280 ~aa~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v~~~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~ 354 (361)
T PTZ00434 280 RASQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAK 354 (361)
T ss_pred HhhhccccCcccccCCCccccccCCCCCCeEEEhhhCeEeccCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhc
Confidence 37889999999999999999999999999999999999996 489999999999999999999999999764
No 12
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=5.5e-32 Score=194.78 Aligned_cols=70 Identities=23% Similarity=0.510 Sum_probs=65.4
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceee-eCCeEEEEEEeCCCCchhhhHHHHHHHhhhc
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIAL-SKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 71 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~-~~~~vki~~WyDNE~gy~~r~~dl~~~~~~~ 71 (72)
+||+|+|||||+|+|+|+||+||+|+|+ ||||+.+|+++ +++++|+++||||||||++||+|++.++.+.
T Consensus 266 ~aa~~~l~gil~~~~~~~VS~Df~~~~~-si~D~~~t~~~~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~ 336 (342)
T PTZ00353 266 EAASDRLNGVLCISKRDMISVDCIPNGK-LCYDATSSSSSREGEVHKMVLWFDVECYYAARLLSLVKQLHQI 336 (342)
T ss_pred HHhhcccCCeEEecCCCeeeeEeCCCCC-eEEEcccCeEEeCCCEEEEEEEecCchHHHHHHHHHHHHHHhc
Confidence 3678999999999999999999999995 99999999995 7899999999999999999999999998754
No 13
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=99.97 E-value=1.4e-31 Score=191.28 Aligned_cols=63 Identities=41% Similarity=0.777 Sum_probs=60.7
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHH
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVD 63 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~d 63 (72)
+|++|+|||||+|+++|+||+||+|+|||+|||+.+|++++++++|+++||||||||++||+|
T Consensus 263 ~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE~gys~r~~d 325 (325)
T TIGR01532 263 EAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNEWGFANRMLD 325 (325)
T ss_pred HhhccccccccccccCCccccccCCCCcceEEEcccCEEecCCEEEEEEEeCCcceeeeEccC
Confidence 367899999999999999999999999999999999999999999999999999999999986
No 14
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=99.96 E-value=2.7e-30 Score=185.00 Aligned_cols=63 Identities=60% Similarity=1.053 Sum_probs=59.4
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeee--CCeEEEEEEeCCCCchhhhHHH
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALS--KKFVKLVSWYDNEWGYSTRVVD 63 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~--~~~vki~~WyDNE~gy~~r~~d 63 (72)
+|++++|||||+|+|+|+||+||+|+|||+|||+.+|++++ ++++|+++||||||||++||+|
T Consensus 263 ~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyDNE~gys~r~~d 327 (327)
T TIGR01534 263 EAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYDNEWGYSNRVVD 327 (327)
T ss_pred hhhhcccCceeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeCCCceeeeEccC
Confidence 36788999999999999999999999999999999999954 8999999999999999999986
No 15
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.96 E-value=7.1e-30 Score=189.49 Aligned_cols=69 Identities=38% Similarity=0.665 Sum_probs=65.2
Q ss_pred Cc-ccCcccceeeecc-CccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhhc
Q 036908 2 ES-EGKLKGILGYTED-DVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 71 (72)
Q Consensus 2 aa-~g~lkgil~yte~-~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~~ 71 (72)
|| +++|+|||+|+++ |+||+||+|++||+|||+.+|+++ ++++|+++||||||||++||+|++++|++.
T Consensus 401 aa~~~~L~gil~yt~~~~lVSsDfig~~~SsI~D~~~T~v~-g~~vkv~~WYDNE~GYS~rvvdl~~~~~~~ 471 (477)
T PRK08289 401 MSLHSPLQNQIDYTDSTEVVSSDFVGSRHAGVVDSQATIVN-GNRAVLYVWYDNEFGYSCQVVRVMEQMAGV 471 (477)
T ss_pred HhhcCCccceeeecccCCeeeeeecCCCchhheehhccEEc-CCEEEEEEEecCchhHHHHHHHHHHHHHhc
Confidence 56 5899999999999 799999999999999999999998 799999999999999999999999999764
No 16
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.5e-26 Score=166.07 Aligned_cols=70 Identities=67% Similarity=1.056 Sum_probs=65.5
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhh
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 70 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~ 70 (72)
+|++++|||+++|+|+|+||+||+++|||+|||+.+|++.+++++|+++||||||||++|++|+.++++.
T Consensus 263 ~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydNE~gys~r~vD~~~~~~~ 332 (335)
T COG0057 263 AASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDNEWGYSNRVVDLLAMVAK 332 (335)
T ss_pred HhhcccccceeeeEeccccccccCCCcceeEEEccceEeccCcEEEEEEEEeccccchHHHHHHHHHHhh
Confidence 3678899999999999999999999999999999999999889999999999999999999999777654
No 17
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=99.71 E-value=3.4e-18 Score=111.84 Aligned_cols=50 Identities=60% Similarity=1.007 Sum_probs=48.5
Q ss_pred CcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEe
Q 036908 2 ESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWY 51 (72)
Q Consensus 2 aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~Wy 51 (72)
|++++++||++|+++|+||+||+++++|+|||+.++++++++++|+++||
T Consensus 108 aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY 157 (157)
T PF02800_consen 108 AARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY 157 (157)
T ss_dssp HHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred hhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence 56799999999999999999999999999999999999999999999999
No 18
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.7e-16 Score=111.92 Aligned_cols=40 Identities=65% Similarity=1.065 Sum_probs=35.6
Q ss_pred CCcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeCCCCchhhhHHHHHHHhhhc
Q 036908 1 AESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 71 (72)
Q Consensus 1 ~aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~gy~~r~~dl~~~~~~~ 71 (72)
+|++++||||| ||+ +| ++|||||||||+|++||+.||+++
T Consensus 246 ~~~~~~lkGIL--te~--------------------------~f---ISWYDNE~GYS~rVvDl~~h~ask 285 (285)
T KOG0657|consen 246 LASEIPLKGIL--TEH--------------------------HF---ISWYDNEFGYSNRVVDLMEHMASK 285 (285)
T ss_pred Hhhcccccccc--ccc--------------------------ce---eeeeccccccchHHHHHHHHHhcC
Confidence 36899999999 888 33 899999999999999999999874
No 19
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=37.50 E-value=19 Score=27.16 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCeEEEEEEeCCCCchhhhHHHHHHHhhh
Q 036908 42 KKFVKLVSWYDNEWGYSTRVVDLIVHMSK 70 (72)
Q Consensus 42 ~~~vki~~WyDNE~gy~~r~~dl~~~~~~ 70 (72)
++.+-.-+|.+||.-|.+|+-.|.+||..
T Consensus 122 Dq~vatg~Wp~~Enp~~~r~n~l~eY~q~ 150 (449)
T KOG3896|consen 122 DQSVATGSWPTKENPLVNRLNELTEYMQR 150 (449)
T ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45566778999999999999999999853
No 20
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=28.16 E-value=57 Score=15.13 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=7.0
Q ss_pred EEEEEeCCCCc
Q 036908 46 KLVSWYDNEWG 56 (72)
Q Consensus 46 ki~~WyDNE~g 56 (72)
++.+|=+|++|
T Consensus 19 ~v~~wG~n~~G 29 (30)
T PF13540_consen 19 EVYCWGDNNYG 29 (30)
T ss_dssp EEEEEE--TTS
T ss_pred CEEEEcCCcCC
Confidence 57889888876
No 21
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=27.57 E-value=35 Score=25.26 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=28.4
Q ss_pred ccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCC
Q 036908 4 EGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKK 43 (72)
Q Consensus 4 ~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~ 43 (72)
+|..+..+..||-++.|||-.. -..||.--....++|++
T Consensus 110 eG~irScFaMTEP~VASSDATN-Ie~SI~r~~~~YvINg~ 148 (392)
T KOG1469|consen 110 EGNIRSCFAMTEPDVASSDATN-IECSIRRDGDSYVINGK 148 (392)
T ss_pred cCCceeeEeecCCccccccccc-ceEEEEEcCCEEEEecc
Confidence 5667778899999999999554 34556665566777766
No 22
>PRK10943 cold shock-like protein CspC; Provisional
Probab=23.54 E-value=59 Score=18.16 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=8.0
Q ss_pred EEEEeCCCCch
Q 036908 47 LVSWYDNEWGY 57 (72)
Q Consensus 47 i~~WyDNE~gy 57 (72)
.+.|||.+-||
T Consensus 7 ~Vk~f~~~kGf 17 (69)
T PRK10943 7 QVKWFNESKGF 17 (69)
T ss_pred EEEEEeCCCCc
Confidence 45788887665
No 23
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=22.33 E-value=1.7e+02 Score=17.91 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=20.3
Q ss_pred CCcceeEEeCCCceeeeCCeEEEEEEeCCCC
Q 036908 25 GDSRSSIFDAKAGIALSKKFVKLVSWYDNEW 55 (72)
Q Consensus 25 ~~~~ssi~d~~~t~~~~~~~vki~~WyDNE~ 55 (72)
|..++.++++... + |.+.++--|+||..
T Consensus 45 g~~~sfli~t~~~--l-G~l~~v~~~~dn~~ 72 (120)
T cd01755 45 NKTYSFLIDTEVD--I-GDLLKVKFKWENNV 72 (120)
T ss_pred CCEEEEEEEcCCC--c-cceEEEEEEEcCCC
Confidence 4567777777652 3 67888888999975
No 24
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=21.85 E-value=67 Score=17.92 Aligned_cols=11 Identities=27% Similarity=0.948 Sum_probs=8.0
Q ss_pred EEEEeCCCCch
Q 036908 47 LVSWYDNEWGY 57 (72)
Q Consensus 47 i~~WyDNE~gy 57 (72)
.+.|||.+-||
T Consensus 7 ~Vk~f~~~kGy 17 (69)
T PRK09507 7 NVKWFNESKGF 17 (69)
T ss_pred EEEEEeCCCCc
Confidence 45799987665
No 25
>PHA02106 hypothetical protein
Probab=20.51 E-value=2.3 Score=25.40 Aligned_cols=16 Identities=44% Similarity=1.134 Sum_probs=10.4
Q ss_pred EEEEEeCCCCchhhhH
Q 036908 46 KLVSWYDNEWGYSTRV 61 (72)
Q Consensus 46 ki~~WyDNE~gy~~r~ 61 (72)
|++.||..||-|...+
T Consensus 10 k~ikwyeqew~y~k~i 25 (91)
T PHA02106 10 KAVKWYEQEWYYGKWI 25 (91)
T ss_pred HHHHHHHHHHhhceeE
Confidence 5566888887665443
No 26
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=20.44 E-value=69 Score=18.13 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=15.1
Q ss_pred ccCCCCCcceeEEeCCCceee
Q 036908 20 STDFVGDSRSSIFDAKAGIAL 40 (72)
Q Consensus 20 S~Df~~~~~ssi~d~~~t~~~ 40 (72)
+..+||.|...++|++++..+
T Consensus 2 ~v~InG~~~~fLvDTGA~~ti 22 (86)
T cd06095 2 TITVEGVPIVFLVDTGATHSV 22 (86)
T ss_pred EEEECCEEEEEEEECCCCeEE
Confidence 445678888888888777543
Done!