Query 036908
Match_columns 72
No_of_seqs 126 out of 1061
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 10:46:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036908.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036908hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cmco2 d.81.1.1 (O:149-312) G 99.9 1.2E-23 8.8E-28 136.5 3.8 51 2-52 113-163 (163)
2 d1rm4a2 d.81.1.1 (A:149-312) G 99.9 5.7E-23 4.1E-27 133.2 4.1 51 2-52 113-163 (163)
3 d1u8fo2 d.81.1.1 (O:152-315) G 99.9 9.1E-23 6.7E-27 132.4 4.7 51 2-52 114-164 (164)
4 d2g82a2 d.81.1.1 (A:149-310) G 99.8 8.8E-22 6.4E-26 127.4 3.9 50 2-52 113-162 (162)
5 d1obfo2 d.81.1.1 (O:153-314) G 99.8 1.3E-20 9.4E-25 121.8 3.8 49 2-51 114-162 (162)
6 d1k3ta2 d.81.1.1 (A:165-333) G 99.8 6E-21 4.4E-25 124.1 1.1 50 2-51 116-169 (169)
7 d1xova1 b.34.11.4 (A:181-314) 59.3 1.9 0.00014 25.0 1.4 11 48-58 106-116 (134)
8 d2icha1 b.176.1.1 (A:24-351) A 43.9 3.2 0.00023 27.2 0.8 23 35-57 171-195 (328)
9 d1t3ba1 c.47.1.9 (A:61-210) Di 23.9 30 0.0022 19.1 2.8 25 44-68 27-51 (150)
10 d1g6pa_ b.40.4.5 (A:) Major co 21.7 18 0.0013 18.0 1.3 11 47-57 4-14 (66)
No 1
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}
Probab=99.87 E-value=1.2e-23 Score=136.48 Aligned_cols=51 Identities=49% Similarity=0.857 Sum_probs=49.7
Q ss_pred CcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeC
Q 036908 2 ESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYD 52 (72)
Q Consensus 2 aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyD 52 (72)
|++++|||||+|+++|+||+||+|+|||+|||+.+|++++++++|+++|||
T Consensus 113 as~~~lkgil~~t~~plVSsDf~g~~~SsI~D~~~t~v~~~~~vKv~aWYD 163 (163)
T d3cmco2 113 AAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYD 163 (163)
T ss_dssp HHHTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGGCEEETTTEEEEEEEEC
T ss_pred HhcCCccCcceeeecccchhhccCCCccEEEEcccCEEECCCEEEEEEEeC
Confidence 678999999999999999999999999999999999999999999999998
No 2
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=99.86 E-value=5.7e-23 Score=133.25 Aligned_cols=51 Identities=33% Similarity=0.654 Sum_probs=49.6
Q ss_pred CcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeC
Q 036908 2 ESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYD 52 (72)
Q Consensus 2 aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyD 52 (72)
||+++|+|||+|+++|+||+||+|+|||+|||+.+|++++++++|+++|||
T Consensus 113 as~~~~~~il~~~~eplVSsDf~g~~~SsI~D~~~t~v~~~~lvKi~~WYD 163 (163)
T d1rm4a2 113 SADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYD 163 (163)
T ss_dssp HHTTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGGCEEETTTEEEEEEEEC
T ss_pred HhhCcccCccccccCccccccccCCCCcEEEEcccCEEECCCEEEEEEEcC
Confidence 678999999999999999999999999999999999999999999999998
No 3
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}
Probab=99.86 E-value=9.1e-23 Score=132.43 Aligned_cols=51 Identities=71% Similarity=1.112 Sum_probs=49.6
Q ss_pred CcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeC
Q 036908 2 ESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYD 52 (72)
Q Consensus 2 aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyD 52 (72)
||+++|+|||+|+++|+||+||+|+|||+|||+.+|++++++++|+++|||
T Consensus 114 aa~~~lk~Il~~~~eplVSsDf~g~~~S~IvD~~~T~v~~~~~vKv~aWYD 164 (164)
T d1u8fo2 114 ASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYD 164 (164)
T ss_dssp HHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETTTCEEEETTEEEEEEEEC
T ss_pred HhcCCccCcccccccceeecccCCCCccEEEEccCCEEECCCEEEEEEEcC
Confidence 578999999999999999999999999999999999999999999999998
No 4
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Probab=99.83 E-value=8.8e-22 Score=127.45 Aligned_cols=50 Identities=56% Similarity=0.856 Sum_probs=47.9
Q ss_pred CcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEeC
Q 036908 2 ESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYD 52 (72)
Q Consensus 2 aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~WyD 52 (72)
|++|+|+|||+|+++|+||+||+|+|||+|||+.+|+++ |+++|+++|||
T Consensus 113 aa~~~~~~il~~~~eplVS~Df~g~~~S~I~D~~~T~v~-g~~vKi~~WYD 162 (162)
T d2g82a2 113 AAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKAL-GNMVKVFAWYD 162 (162)
T ss_dssp HHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEE-TTEEEEEEEEC
T ss_pred HccCCCcCeeeEecccceehhcCCCCCceEEEhhHceEe-CCEEEEEEEeC
Confidence 678999999999999999999999999999999999988 58999999998
No 5
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}
Probab=99.79 E-value=1.3e-20 Score=121.83 Aligned_cols=49 Identities=47% Similarity=0.746 Sum_probs=46.2
Q ss_pred CcccCcccceeeeccCccccCCCCCcceeEEeCCCceeeeCCeEEEEEEe
Q 036908 2 ESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWY 51 (72)
Q Consensus 2 aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vki~~Wy 51 (72)
|++++|+|||+|+++|+||+||+|+|||+|||+.+|. ++++++|+++||
T Consensus 114 aa~~~~~~il~~t~eplVSsDf~g~~~S~I~D~~~t~-v~g~~vKi~~WY 162 (162)
T d1obfo2 114 ASEGELKGILDYNTEPLVSVDYNHDPASSTVDASLTK-VSGRLVKVSSWY 162 (162)
T ss_dssp HHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCE-EETTEEEEEEEE
T ss_pred HhhCcccCcccccCCccCCccccCCCceeEEcHHHce-ECCCEEEEEEEC
Confidence 5789999999999999999999999999999999986 478999999999
No 6
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Probab=99.79 E-value=6e-21 Score=124.10 Aligned_cols=50 Identities=52% Similarity=0.997 Sum_probs=47.1
Q ss_pred CcccCcccceeeeccCccccCCCCCcceeEEeCCCceeee----CCeEEEEEEe
Q 036908 2 ESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALS----KKFVKLVSWY 51 (72)
Q Consensus 2 aa~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~----~~~vki~~Wy 51 (72)
|++++|||||+|+++|+||+||+|+|||+|||+.+|++++ ++++|+++||
T Consensus 116 as~~~~kgil~~t~eplVS~Df~g~~~SsI~D~~~t~v~~~~~~~~lvKv~aWY 169 (169)
T d1k3ta2 116 ASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWY 169 (169)
T ss_dssp HHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEHHHHHHSSCTTCSSEEEEEEEE
T ss_pred HhhCCCCCceeEecCcEEeeccCCCCcceEEEcccceecccccCCCEEEEEEeC
Confidence 6789999999999999999999999999999999998765 8999999999
No 7
>d1xova1 b.34.11.4 (A:181-314) Endolysin Ply, C-terminal domain {Bacteriophage Psa [TaxId: 171618]}
Probab=59.33 E-value=1.9 Score=24.96 Aligned_cols=11 Identities=64% Similarity=1.347 Sum_probs=9.3
Q ss_pred EEEeCCCCchh
Q 036908 48 VSWYDNEWGYS 58 (72)
Q Consensus 48 ~~WyDNE~gy~ 58 (72)
++||||.-||-
T Consensus 106 lswy~n~kgyl 116 (134)
T d1xova1 106 LSWYDNKKGYL 116 (134)
T ss_dssp EEEECCSSSSE
T ss_pred eEEEeCCCceE
Confidence 58999998874
No 8
>d2icha1 b.176.1.1 (A:24-351) AttH-related protein NE1406 {Nitrosomonas europaea [TaxId: 915]}
Probab=43.91 E-value=3.2 Score=27.24 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=15.4
Q ss_pred CCceeeeCCeEEE--EEEeCCCCch
Q 036908 35 KAGIALSKKFVKL--VSWYDNEWGY 57 (72)
Q Consensus 35 ~~t~~~~~~~vki--~~WyDNE~gy 57 (72)
.-+..++++.++| .+|||.|||-
T Consensus 171 ~Gtl~~~g~~~~V~G~~W~DheWgs 195 (328)
T d2icha1 171 SGIINRQGEDIPVTGTAWLDREWSS 195 (328)
T ss_dssp EEEEEESSCEEEEEEEEEEEEEEES
T ss_pred eeEEEEcCceEEccCCEEEeeeccc
Confidence 3345566665444 5799999984
No 9
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=23.89 E-value=30 Score=19.11 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=19.4
Q ss_pred eEEEEEEeCCCCchhhhHHHHHHHh
Q 036908 44 FVKLVSWYDNEWGYSTRVVDLIVHM 68 (72)
Q Consensus 44 ~vki~~WyDNE~gy~~r~~dl~~~~ 68 (72)
-++|+-+.|-+++|+.|+...++.+
T Consensus 27 k~~I~~FsD~~CPyC~~~~~~l~~l 51 (150)
T d1t3ba1 27 KHVVTVFMDITCHYCHLLHQQLKEY 51 (150)
T ss_dssp SEEEEEEECTTCHHHHHHHTTHHHH
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHH
Confidence 3567889999999999987655443
No 10
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima [TaxId: 2336]}
Probab=21.75 E-value=18 Score=17.97 Aligned_cols=11 Identities=45% Similarity=1.162 Sum_probs=7.9
Q ss_pred EEEEeCCCCch
Q 036908 47 LVSWYDNEWGY 57 (72)
Q Consensus 47 i~~WyDNE~gy 57 (72)
.+.||+.+-||
T Consensus 4 ~Vk~f~~~kGf 14 (66)
T d1g6pa_ 4 KVKWFDSKKGY 14 (66)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEeCCCCe
Confidence 35799888665
Done!