BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036909
         (100 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P0R|A Chain A, Crystal Structure Of Azoreductase From Bacillus Anthracis
           Str. Sterne
          Length = 211

 Score = 30.8 bits (68), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 43  ETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIPCEENTFIDITSRLERS 100
           E + K   V   YLNQ L  D +      FGF  P+  LTIP   +T+ID  +R  ++
Sbjct: 74  EEEAKAVAVADKYLNQFLEADKVV-----FGF--PLWNLTIPAVLHTYIDYLNRAGKT 124


>pdb|3V4C|A Chain A, Crystal Structure Of A Semialdehyde Dehydrogenase From
           Sinorhizobium Meliloti 1021
 pdb|3V4C|B Chain B, Crystal Structure Of A Semialdehyde Dehydrogenase From
           Sinorhizobium Meliloti 1021
          Length = 528

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 36  FLAVYVGETQRKRFLVPVSYLNQPLFQDLL 65
           F A  VG    +RFL PV+Y N P  +DLL
Sbjct: 495 FGATSVGTXSIRRFLRPVAYQNXP--EDLL 522


>pdb|3PQS|A Chain A, The Crystal Structures Of Porcine Pathogen Aph87_tbpb
          Length = 521

 Score = 25.4 bits (54), Expect = 9.1,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 15  LRQSALTAKKGASTSLDVPKGFLAVYVGE 43
           LR       KG   S ++PKG + VY GE
Sbjct: 116 LRDKGYVYYKGVHPSKELPKGNIIVYQGE 144


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,725,539
Number of Sequences: 62578
Number of extensions: 99398
Number of successful extensions: 171
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 3
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)