Query 036909
Match_columns 100
No_of_seqs 118 out of 648
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:36:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 2.4E-42 5.2E-47 239.9 10.9 96 1-98 1-104 (104)
2 PLN03220 uncharacterized prote 100.0 4.2E-40 9.1E-45 228.9 10.8 95 1-96 1-102 (105)
3 PLN03219 uncharacterized prote 100.0 1.8E-37 3.8E-42 216.7 10.5 97 1-97 1-105 (108)
4 PF02519 Auxin_inducible: Auxi 100.0 1.2E-36 2.7E-41 209.0 9.4 96 1-98 1-100 (100)
5 PF02214 BTB_2: BTB/POZ domain 88.3 0.63 1.4E-05 30.0 3.1 57 39-99 3-62 (94)
6 PRK02899 adaptor protein; Prov 83.5 1 2.2E-05 34.1 2.5 24 59-83 39-62 (197)
7 PRK02315 adaptor protein; Prov 77.7 1.8 3.9E-05 33.4 2.2 24 59-83 39-62 (233)
8 PF02100 ODC_AZ: Ornithine dec 77.6 4.1 8.9E-05 28.1 3.8 50 46-97 24-77 (108)
9 PF05389 MecA: Negative regula 71.6 1.3 2.8E-05 33.4 0.0 25 58-83 38-62 (220)
10 smart00666 PB1 PB1 domain. Pho 66.3 28 0.00062 21.5 5.6 51 42-98 9-69 (81)
11 PRK14172 bifunctional 5,10-met 57.5 54 0.0012 26.3 6.8 52 35-99 34-87 (278)
12 PRK14186 bifunctional 5,10-met 55.8 55 0.0012 26.5 6.6 55 32-99 31-87 (297)
13 PRK14193 bifunctional 5,10-met 54.6 65 0.0014 25.9 6.8 54 33-99 32-87 (284)
14 PRK14188 bifunctional 5,10-met 53.9 70 0.0015 25.7 6.9 55 32-99 31-87 (296)
15 PRK14179 bifunctional 5,10-met 53.8 74 0.0016 25.5 7.0 54 33-99 32-87 (284)
16 PRK14170 bifunctional 5,10-met 50.9 77 0.0017 25.5 6.7 55 32-99 30-86 (284)
17 PF02209 VHP: Villin headpiece 49.6 9.7 0.00021 21.8 1.0 19 55-73 1-19 (36)
18 smart00153 VHP Villin headpiec 48.2 11 0.00025 21.4 1.2 19 55-73 1-19 (36)
19 PRK14177 bifunctional 5,10-met 46.2 1E+02 0.0023 24.8 6.8 52 35-99 35-88 (284)
20 PRK14171 bifunctional 5,10-met 46.1 1.2E+02 0.0026 24.4 7.1 53 34-99 33-87 (288)
21 PRK14176 bifunctional 5,10-met 45.1 1.3E+02 0.0029 24.2 7.2 55 32-99 37-93 (287)
22 PRK14184 bifunctional 5,10-met 44.7 1.1E+02 0.0024 24.6 6.8 55 32-99 30-86 (286)
23 PRK14187 bifunctional 5,10-met 44.2 1.2E+02 0.0027 24.4 7.0 55 32-99 31-87 (294)
24 PF11834 DUF3354: Domain of un 43.3 20 0.00044 23.1 1.9 23 47-75 20-42 (69)
25 PRK14166 bifunctional 5,10-met 43.3 1.2E+02 0.0027 24.3 6.8 55 32-99 29-85 (282)
26 PLN02897 tetrahydrofolate dehy 42.2 1.2E+02 0.0025 25.3 6.6 54 33-99 86-141 (345)
27 PF12058 DUF3539: Protein of u 42.2 4.8 0.0001 27.6 -1.2 12 54-65 4-15 (88)
28 PRK14192 bifunctional 5,10-met 42.2 1.4E+02 0.003 23.7 6.9 55 32-99 32-88 (283)
29 PRK14194 bifunctional 5,10-met 41.8 1.4E+02 0.0031 24.2 7.0 55 32-99 32-88 (301)
30 PRK14190 bifunctional 5,10-met 41.3 1.5E+02 0.0032 23.8 7.0 55 32-99 31-87 (284)
31 PRK14180 bifunctional 5,10-met 41.1 1.5E+02 0.0032 23.8 6.9 55 32-99 30-86 (282)
32 PF08861 DUF1828: Domain of un 39.9 96 0.0021 20.0 4.8 39 58-96 44-82 (90)
33 PRK10792 bifunctional 5,10-met 39.8 1.3E+02 0.0029 24.1 6.5 53 34-99 34-88 (285)
34 PF08948 DUF1859: Domain of un 38.7 13 0.00028 26.7 0.5 28 33-62 86-123 (126)
35 PRK10308 3-methyl-adenine DNA 38.5 1.4E+02 0.003 23.6 6.4 63 34-97 45-121 (283)
36 PRK14189 bifunctional 5,10-met 38.1 1.9E+02 0.0042 23.2 7.2 54 33-99 32-87 (285)
37 PRK14191 bifunctional 5,10-met 36.5 1.8E+02 0.004 23.3 6.8 55 32-99 30-86 (285)
38 PRK14169 bifunctional 5,10-met 36.1 2E+02 0.0042 23.1 6.9 54 33-99 30-85 (282)
39 PF00651 BTB: BTB/POZ domain; 35.0 1.1E+02 0.0025 19.0 5.5 54 37-97 13-71 (111)
40 PLN02516 methylenetetrahydrofo 33.9 2.3E+02 0.0049 23.0 7.0 54 33-99 39-94 (299)
41 PF00763 THF_DHG_CYH: Tetrahyd 33.5 1.6E+02 0.0034 20.1 5.8 56 31-99 27-84 (117)
42 cd01406 SIR2-like Sir2-like: P 32.2 56 0.0012 24.3 3.1 36 35-77 1-36 (242)
43 PRK14174 bifunctional 5,10-met 31.6 2.3E+02 0.0049 22.9 6.6 55 32-99 30-86 (295)
44 PRK14182 bifunctional 5,10-met 31.3 2.5E+02 0.0054 22.6 6.8 55 32-99 29-85 (282)
45 PRK14183 bifunctional 5,10-met 31.1 2.6E+02 0.0056 22.5 6.8 55 32-99 30-86 (281)
46 PF11876 DUF3396: Protein of u 30.8 45 0.00098 25.3 2.4 37 47-83 25-63 (208)
47 PF06544 DUF1115: Protein of u 30.2 1.4E+02 0.003 20.5 4.6 26 49-74 2-27 (128)
48 PLN02616 tetrahydrofolate dehy 30.0 2.5E+02 0.0055 23.5 6.8 55 32-99 102-158 (364)
49 PRK14175 bifunctional 5,10-met 29.5 2.6E+02 0.0057 22.4 6.7 55 32-99 31-87 (286)
50 PRK14178 bifunctional 5,10-met 28.3 3.1E+02 0.0068 22.0 7.5 55 32-99 25-81 (279)
51 PRK14185 bifunctional 5,10-met 28.1 2.4E+02 0.0053 22.8 6.2 55 32-99 30-86 (293)
52 cd06410 PB1_UP2 Uncharacterize 27.9 1.4E+02 0.0031 20.1 4.3 57 34-96 13-81 (97)
53 cd04395 RhoGAP_ARHGAP21 RhoGAP 27.3 1.4E+02 0.003 21.8 4.4 40 59-99 19-58 (196)
54 TIGR02529 EutJ ethanolamine ut 27.1 68 0.0015 24.3 2.8 42 47-89 33-74 (239)
55 PRK14173 bifunctional 5,10-met 26.6 3.4E+02 0.0074 21.8 7.6 53 34-99 30-84 (287)
56 PRK02797 4-alpha-L-fucosyltran 26.5 2.8E+02 0.006 23.0 6.4 45 31-75 141-206 (322)
57 PF11822 DUF3342: Domain of un 26.2 1.1E+02 0.0023 25.3 4.0 50 46-99 13-67 (317)
58 PF05194 UreE_C: UreE urease a 26.2 95 0.0021 20.0 3.0 40 11-68 12-51 (87)
59 PF14317 YcxB: YcxB-like prote 25.8 1.3E+02 0.0029 16.8 3.8 31 33-65 28-58 (62)
60 TIGR03687 pupylate_cterm ubiqu 25.5 35 0.00075 19.5 0.7 17 61-77 12-30 (33)
61 PRK14167 bifunctional 5,10-met 24.7 3.8E+02 0.0082 21.7 6.9 55 32-99 30-86 (297)
62 PRK14168 bifunctional 5,10-met 24.4 3.6E+02 0.0079 21.8 6.6 54 33-99 33-88 (297)
63 PF07429 Glyco_transf_56: 4-al 23.8 2.3E+02 0.0051 23.8 5.5 44 31-74 180-244 (360)
64 cd05992 PB1 The PB1 domain is 23.5 1.8E+02 0.0039 17.6 7.0 49 46-98 11-69 (81)
65 cd06536 CIDE_N_ICAD CIDE_N dom 22.9 1.3E+02 0.0028 20.1 3.2 34 47-85 14-47 (80)
66 COG4862 MecA Negative regulato 22.7 60 0.0013 25.6 1.8 26 58-84 38-63 (224)
67 cd04751 Commd3 COMM_Domain con 22.5 44 0.00096 22.3 0.9 20 79-98 65-84 (95)
68 PF05041 Pecanex_C: Pecanex pr 21.5 83 0.0018 24.8 2.4 31 5-43 190-220 (232)
69 PRK13347 coproporphyrinogen II 21.1 2.8E+02 0.006 23.0 5.5 49 34-90 102-150 (453)
70 PF11731 Cdd1: Pathogenicity l 20.7 1.4E+02 0.003 20.3 3.1 31 62-98 45-75 (93)
71 COG1759 5-formaminoimidazole-4 20.6 45 0.00098 28.0 0.8 24 30-53 88-112 (361)
72 cd06396 PB1_NBR1 The PB1 domai 20.1 2.8E+02 0.006 18.4 5.0 45 46-92 11-63 (81)
73 PF06344 Parecho_VpG: Parechov 20.0 55 0.0012 16.6 0.7 12 28-39 7-18 (20)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=239.92 Aligned_cols=96 Identities=51% Similarity=0.867 Sum_probs=87.8
Q ss_pred CCccchh----HHHHHHHHHHhhhhhhcCC----CCcCCCCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhc
Q 036909 1 MGIRLPG----FILAKQILRQSALTAKKGA----STSLDVPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEF 72 (100)
Q Consensus 1 m~~~~~~----~~~~k~~l~r~~~~~~~~~----s~~~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEf 72 (100)
|||++++ ++++||+|+||+|.+++.+ ..+.+||+||||||||++ ++||+||++|||||+|++||++|||||
T Consensus 1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~-~~RfvVp~~~L~hP~F~~LL~~aeeEf 79 (104)
T PLN03090 1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGEN-RSRYIVPISFLTHPEFQSLLQQAEEEF 79 (104)
T ss_pred CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCC-CEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence 8888776 5789999999999987654 367799999999999995 799999999999999999999999999
Q ss_pred CCccCCCceeeeCcHHHHHHHHHHhh
Q 036909 73 GFNHPMGGLTIPCEENTFIDITSRLE 98 (100)
Q Consensus 73 G~~~~~G~L~IPC~~~~F~~vl~~l~ 98 (100)
||+|+ |+|+|||+++.|++++|+|+
T Consensus 80 Gf~~~-G~L~IPC~~~~Fe~ll~~i~ 104 (104)
T PLN03090 80 GFDHD-MGLTIPCEEVVFRSLTSMIR 104 (104)
T ss_pred CCCCC-CcEEEeCCHHHHHHHHHHhC
Confidence 99998 89999999999999999983
No 2
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=4.2e-40 Score=228.93 Aligned_cols=95 Identities=57% Similarity=0.994 Sum_probs=84.0
Q ss_pred CCccchhHHHH-HHHHHHhhhhhhcC---CCCcCCCCCCeEEEEEcCC---CceEEEEeccccCcHHHHHHHHhhHHhcC
Q 036909 1 MGIRLPGFILA-KQILRQSALTAKKG---ASTSLDVPKGFLAVYVGET---QRKRFLVPVSYLNQPLFQDLLSRAEEEFG 73 (100)
Q Consensus 1 m~~~~~~~~~~-k~~l~r~~~~~~~~---~s~~~~vpkG~~aVyVG~~---~~~RfvVp~~~L~hP~F~~LL~~aeEEfG 73 (100)
||+++++|... ||+|+||+ .+++. ++.+.+|||||||||||++ +++|||||++|||||.|++||++||||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfG 79 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNS-LANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFG 79 (105)
T ss_pred CCcchhhhHHHHHHHHHHHh-hcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhC
Confidence 99999999854 99999999 44332 2466799999999999983 47999999999999999999999999999
Q ss_pred CccCCCceeeeCcHHHHHHHHHH
Q 036909 74 FNHPMGGLTIPCEENTFIDITSR 96 (100)
Q Consensus 74 ~~~~~G~L~IPC~~~~F~~vl~~ 96 (100)
|+|++|+|+|||+++.|++++..
T Consensus 80 f~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 80 FNHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCCEEeeCCHHHHHHHHHh
Confidence 99855999999999999999863
No 3
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=216.68 Aligned_cols=97 Identities=53% Similarity=0.927 Sum_probs=84.5
Q ss_pred CCccchhHHHHHHHHHHhhhhhhcCC-------CCcCCCCCCeEEEEEcC-CCceEEEEeccccCcHHHHHHHHhhHHhc
Q 036909 1 MGIRLPGFILAKQILRQSALTAKKGA-------STSLDVPKGFLAVYVGE-TQRKRFLVPVSYLNQPLFQDLLSRAEEEF 72 (100)
Q Consensus 1 m~~~~~~~~~~k~~l~r~~~~~~~~~-------s~~~~vpkG~~aVyVG~-~~~~RfvVp~~~L~hP~F~~LL~~aeEEf 72 (100)
||+.++.+..+||+.+-.+...+..+ +.+.+||+||+|||||+ ++++|||||++|||||+|++||++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf 80 (108)
T PLN03219 1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC 80 (108)
T ss_pred CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence 89999999999999986666544332 24467999999999998 35899999999999999999999999999
Q ss_pred CCccCCCceeeeCcHHHHHHHHHHh
Q 036909 73 GFNHPMGGLTIPCEENTFIDITSRL 97 (100)
Q Consensus 73 G~~~~~G~L~IPC~~~~F~~vl~~l 97 (100)
||+|++|+|+|||+++.|+++++.-
T Consensus 81 Gf~~~~G~L~IPCd~~~F~~ll~~~ 105 (108)
T PLN03219 81 GFHHSMGGLTIPCREESFLHLITSH 105 (108)
T ss_pred CCCCCCCCEEEeCCHHHHHHHHHhh
Confidence 9998669999999999999999864
No 4
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=1.2e-36 Score=208.95 Aligned_cols=96 Identities=51% Similarity=0.826 Sum_probs=76.8
Q ss_pred CCccchhHHHHHHHHHHhhhhhhcC----CCCcCCCCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCcc
Q 036909 1 MGIRLPGFILAKQILRQSALTAKKG----ASTSLDVPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNH 76 (100)
Q Consensus 1 m~~~~~~~~~~k~~l~r~~~~~~~~----~s~~~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~ 76 (100)
|..++..+...++...+++...... ++...++|+||||||||++ ++||+||++|||||+|++||++|||||||+|
T Consensus 1 M~~~~k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~-~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~ 79 (100)
T PF02519_consen 1 MASRLKSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEE-RRRFVVPVSYLNHPLFQELLEQAEEEFGFDQ 79 (100)
T ss_pred CccHHHHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCcc-ceEEEechHHcCchhHHHHHHHHhhhcCcCC
Confidence 4445555555555544444322211 1234789999999999995 7999999999999999999999999999999
Q ss_pred CCCceeeeCcHHHHHHHHHHhh
Q 036909 77 PMGGLTIPCEENTFIDITSRLE 98 (100)
Q Consensus 77 ~~G~L~IPC~~~~F~~vl~~l~ 98 (100)
+ |+|+|||+++.|++++|+|+
T Consensus 80 ~-G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 80 D-GPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred C-CcEEeeCCHHHHHHHHHHhC
Confidence 7 99999999999999999985
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=88.29 E-value=0.63 Score=29.98 Aligned_cols=57 Identities=25% Similarity=0.241 Sum_probs=41.6
Q ss_pred EEEcCCCceEEEEeccccC-cH--HHHHHHHhhHHhcCCccCCCceeeeCcHHHHHHHHHHhhc
Q 036909 39 VYVGETQRKRFLVPVSYLN-QP--LFQDLLSRAEEEFGFNHPMGGLTIPCEENTFIDITSRLER 99 (100)
Q Consensus 39 VyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l~~ 99 (100)
+-||. ++|.++.+.|. +| .|..++........ ..++|.+-|-++...|++|+..++.
T Consensus 3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~-~~~~~~~fiDRdp~~F~~IL~ylr~ 62 (94)
T PF02214_consen 3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDY-DDDDGEYFIDRDPELFEYILNYLRT 62 (94)
T ss_dssp EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGE-ETTTTEEEESS-HHHHHHHHHHHHH
T ss_pred EEECC---EEEEEcHHHHhhCCCChhhhHHhhcccccc-CCccceEEeccChhhhhHHHHHHhh
Confidence 45775 79999999887 54 68888886522211 2234899999999999999998864
No 6
>PRK02899 adaptor protein; Provisional
Probab=83.54 E-value=1 Score=34.06 Aligned_cols=24 Identities=33% Similarity=0.803 Sum_probs=20.7
Q ss_pred HHHHHHHHhhHHhcCCccCCCceee
Q 036909 59 PLFQDLLSRAEEEFGFNHPMGGLTI 83 (100)
Q Consensus 59 P~F~~LL~~aeEEfG~~~~~G~L~I 83 (100)
-+|.++|++|..|+||.-+ |||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~-~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFEAD-GPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcccC-CeEEE
Confidence 4588889999999999986 89985
No 7
>PRK02315 adaptor protein; Provisional
Probab=77.70 E-value=1.8 Score=33.39 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.5
Q ss_pred HHHHHHHHhhHHhcCCccCCCceee
Q 036909 59 PLFQDLLSRAEEEFGFNHPMGGLTI 83 (100)
Q Consensus 59 P~F~~LL~~aeEEfG~~~~~G~L~I 83 (100)
-+|.++|++|..|+||..+ |||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~~~-~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFADE-GPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCcccC-CeEEE
Confidence 4699999999999999985 99986
No 8
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=77.58 E-value=4.1 Score=28.13 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=26.5
Q ss_pred ceEEE-EeccccCc---HHHHHHHHhhHHhcCCccCCCceeeeCcHHHHHHHHHHh
Q 036909 46 RKRFL-VPVSYLNQ---PLFQDLLSRAEEEFGFNHPMGGLTIPCEENTFIDITSRL 97 (100)
Q Consensus 46 ~~Rfv-Vp~~~L~h---P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l 97 (100)
+.=|| +|-..+.+ ..|.+|||.|||.++.++ -.+.++=+-.....++..+
T Consensus 24 ~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Llr~l 77 (108)
T PF02100_consen 24 RTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLLRTL 77 (108)
T ss_dssp TEEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHHHHH
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhhhhc
Confidence 46666 56555444 459999999999999875 4677776555555555443
No 9
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=71.60 E-value=1.3 Score=33.36 Aligned_cols=25 Identities=40% Similarity=0.748 Sum_probs=0.0
Q ss_pred cHHHHHHHHhhHHhcCCccCCCceee
Q 036909 58 QPLFQDLLSRAEEEFGFNHPMGGLTI 83 (100)
Q Consensus 58 hP~F~~LL~~aeEEfG~~~~~G~L~I 83 (100)
+-.|.++|++|.+|+||..+ |+|++
T Consensus 38 e~fF~~ileea~~e~~F~~~-~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFEND-GPLTF 62 (220)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHhccccCcccC-CeEEE
Confidence 35799999999999999985 88875
No 10
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=66.30 E-value=28 Score=21.48 Aligned_cols=51 Identities=22% Similarity=0.432 Sum_probs=35.7
Q ss_pred cCCCceEEEEeccccCcHHHHHHHHhhHHhcCCc----------cCCCceeeeCcHHHHHHHHHHhh
Q 036909 42 GETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFN----------HPMGGLTIPCEENTFIDITSRLE 98 (100)
Q Consensus 42 G~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~F~~vl~~l~ 98 (100)
|++ .+||.+|- ...|.+|..+..+.|+.. .++..++|.++. .++..+.+..
T Consensus 9 ~~~-~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~ 69 (81)
T smart00666 9 GGE-TRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYD 69 (81)
T ss_pred CCE-EEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHH
Confidence 553 68999885 677999999999988874 122367888865 4555555443
No 11
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.53 E-value=54 Score=26.29 Aligned_cols=52 Identities=12% Similarity=0.311 Sum_probs=38.9
Q ss_pred CeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 35 GFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 35 G~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
+-..|+||++. ..-.....-.++.|+.|+..+ .+.+| |+.+++...+..|+.
T Consensus 34 ~Laii~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (278)
T PRK14172 34 KIASILVGNDG-----------GSIYYMNNQEKVANSLGIDFK--KIKLDESISEEDLINEIEELNK 87 (278)
T ss_pred eEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 77788999841 123355566788999999865 57788 888999999888864
No 12
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.84 E-value=55 Score=26.45 Aligned_cols=55 Identities=16% Similarity=0.336 Sum_probs=40.5
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||+.. ..-....--.++.|++|++.+ .+.+| ++.++|...+..++.
T Consensus 31 ~~p~LaiI~vgdd~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (297)
T PRK14186 31 RPPGLAVLRVGDDP-----------ASAVYVRNKEKACARVGIASF--GKHLPADTSQAEVEALIAQLNQ 87 (297)
T ss_pred CCceEEEEEeCCCh-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34478889999741 123456677788999999875 56676 888899999988864
No 13
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.60 E-value=65 Score=25.90 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=41.0
Q ss_pred CCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 33 PKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 33 pkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
+.+-..|+||++. ..-.....-.++.|+.|++.+ .+.+| ++.+.|...+..++.
T Consensus 32 ~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~el~~~I~~lN~ 87 (284)
T PRK14193 32 TPGLGTVLVGDDP-----------GSQAYVRGKHRDCAEVGITSI--RRDLPADATQEELNAVIDELNA 87 (284)
T ss_pred CceEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 4477889999841 123566777888999999875 57788 889999999988864
No 14
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.89 E-value=70 Score=25.73 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=40.7
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||++. ..-....--.++.|++|++.+ .+.+| ++.++|...+..++.
T Consensus 31 ~~p~La~i~vg~~~-----------~s~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN~ 87 (296)
T PRK14188 31 VTPGLAVVLVGEDP-----------ASQVYVRSKGKQTKEAGMASF--EHKLPADTSQAELLALIARLNA 87 (296)
T ss_pred CCCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44588889999841 123456677788999999865 56777 888899999988864
No 15
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.76 E-value=74 Score=25.55 Aligned_cols=54 Identities=17% Similarity=0.420 Sum_probs=40.6
Q ss_pred CCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 33 PKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 33 pkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
+.+...|.||++. ..-....--.++.|+.|+..+ .+.+| ++.+.|...+..|+.
T Consensus 32 ~P~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 87 (284)
T PRK14179 32 VPGLVVILVGDNP-----------ASQVYVRNKERSALAAGFKSE--VVRLPETISQEELLDLIERYNQ 87 (284)
T ss_pred CceEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3478888999841 123456667788999999875 57888 889999999988864
No 16
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.93 E-value=77 Score=25.49 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=40.7
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||++. ..-.....-.++.+++|+..+ .+.+| ++.++|...+..++.
T Consensus 30 ~~P~Laii~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 30 KKPGLAVVLVGDNQ-----------ASRTYVRNKQKRTEEAGMKSV--LIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred CCCeEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44478889999841 124566777788999999875 56777 778889998888864
No 17
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=49.64 E-value=9.7 Score=21.82 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=15.3
Q ss_pred ccCcHHHHHHHHhhHHhcC
Q 036909 55 YLNQPLFQDLLSRAEEEFG 73 (100)
Q Consensus 55 ~L~hP~F~~LL~~aeEEfG 73 (100)
||+.-.|.+++.++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7889999999999999984
No 18
>smart00153 VHP Villin headpiece domain.
Probab=48.25 E-value=11 Score=21.42 Aligned_cols=19 Identities=32% Similarity=0.600 Sum_probs=17.0
Q ss_pred ccCcHHHHHHHHhhHHhcC
Q 036909 55 YLNQPLFQDLLSRAEEEFG 73 (100)
Q Consensus 55 ~L~hP~F~~LL~~aeEEfG 73 (100)
||+.-.|+.++.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7889999999999999984
No 19
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.23 E-value=1e+02 Score=24.76 Aligned_cols=52 Identities=10% Similarity=0.277 Sum_probs=39.1
Q ss_pred CeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 35 GFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 35 G~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
+...|.||++. ..-....--.++.+++|+..+ .+.+| |+.+.|...+..|+.
T Consensus 35 ~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~ 88 (284)
T PRK14177 35 KLATILVGNNP-----------ASETYVSMKVKACHKVGMGSE--MIRLKEQTTTEELLGVIDKLNL 88 (284)
T ss_pred eEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 77788899841 123455666778899999875 57777 889999999988864
No 20
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.10 E-value=1.2e+02 Score=24.45 Aligned_cols=53 Identities=13% Similarity=0.229 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 34 KGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 34 kG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+...|.||++. ..-....--.++.++.|+..+ .+.+| ++.+.+...+..|+.
T Consensus 33 P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 33 PKLAIVLVGDNP-----------ASIIYVKNKIKNAHKIGIDTL--LVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred CeEEEEEeCCCc-----------cHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 368889999841 123455666778899999875 57787 888888888888764
No 21
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.09 E-value=1.3e+02 Score=24.22 Aligned_cols=55 Identities=16% Similarity=0.439 Sum_probs=41.4
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+-..|.||++. ..-....--.++.|+.|+..+ .+.+| ++.+.+...+..|+.
T Consensus 37 ~~P~Laii~vg~d~-----------aS~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~LN~ 93 (287)
T PRK14176 37 ITPGLATILVGDDP-----------ASKMYVRLKHKACERVGIRAE--DQFLPADTTQEELLELIDSLNK 93 (287)
T ss_pred CCCeEEEEEECCCc-----------chHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34488889999841 124567778888999999875 57777 788899999988864
No 22
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.68 E-value=1.1e+02 Score=24.56 Aligned_cols=55 Identities=20% Similarity=0.371 Sum_probs=40.8
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||++. ..-....--.++.++.|+..+ .+.+| ++.++|...+..++.
T Consensus 30 ~~P~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 30 RAPGLAVILVGEDP-----------ASQVYVRNKERACEDAGIVSE--AFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred CCCEEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34478889999841 113455666778899999875 57788 889999999998864
No 23
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.23 E-value=1.2e+02 Score=24.44 Aligned_cols=55 Identities=18% Similarity=0.380 Sum_probs=40.2
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||++. ..-.....-.++.++.|+..+ .+.+| ++.+.|...+..|+.
T Consensus 31 ~~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~e~~l~~~I~~lN~ 87 (294)
T PRK14187 31 LFPCLIVILVGDDP-----------ASQLYVRNKQRKAEMLGLRSE--TILLPSTISESSLIEKINELNN 87 (294)
T ss_pred CCCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34478889999741 124466677788899999875 57777 778888888888764
No 24
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=43.30 E-value=20 Score=23.07 Aligned_cols=23 Identities=39% Similarity=0.712 Sum_probs=18.8
Q ss_pred eEEEEeccccCcHHHHHHHHhhHHhcCCc
Q 036909 47 KRFLVPVSYLNQPLFQDLLSRAEEEFGFN 75 (100)
Q Consensus 47 ~RfvVp~~~L~hP~F~~LL~~aeEEfG~~ 75 (100)
+=..+| -.+.+||+.|++.||+.
T Consensus 20 Kvi~lP------~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 20 KVIWLP------DSLEELLKIASEKFGFS 42 (69)
T ss_pred EEEEcC------ccHHHHHHHHHHHhCCC
Confidence 455556 46999999999999995
No 25
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.26 E-value=1.2e+02 Score=24.29 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=40.9
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
+..+...|.||++. ..-.....-.++++++|++.+ .+.+| ++.+.|...+..|+.
T Consensus 29 ~~P~Laii~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 29 IESCLAVILVGDNP-----------ASQTYVKSKAKACEECGIKSL--VYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred CCceEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34478889999841 123456677788899999865 57788 888999999988864
No 26
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=42.23 E-value=1.2e+02 Score=25.29 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=40.0
Q ss_pred CCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 33 PKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 33 pkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
+.+...|.||++. ..-....--.++.|++|+..+ .+.+| ++.+++...+..++.
T Consensus 86 ~P~LaiIlvGddp-----------aS~~Yv~~k~K~a~~~GI~~~--~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 86 VPGLAVVLVGQQR-----------DSQTYVRNKIKACEETGIKSL--LAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred CCeEEEEEeCCCh-----------HHHHHHHHHHHHHHhcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3478889999841 012456667788999999875 57777 788889999888864
No 27
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=42.22 E-value=4.8 Score=27.58 Aligned_cols=12 Identities=50% Similarity=0.849 Sum_probs=8.6
Q ss_pred cccCcHHHHHHH
Q 036909 54 SYLNQPLFQDLL 65 (100)
Q Consensus 54 ~~L~hP~F~~LL 65 (100)
.|||||.|.-|-
T Consensus 4 ~YLNHPtFGlLy 15 (88)
T PF12058_consen 4 TYLNHPTFGLLY 15 (88)
T ss_dssp -EEEETTTEEEE
T ss_pred ccccCCccchhe
Confidence 589999986553
No 28
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.20 E-value=1.4e+02 Score=23.66 Aligned_cols=55 Identities=9% Similarity=0.193 Sum_probs=40.6
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceee--eCcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTI--PCEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~I--PC~~~~F~~vl~~l~~ 99 (100)
.+.+-..|+||++. ..-.....-.++.++.|.+.. -+.+ .|+.+.|+.++..++.
T Consensus 32 ~~p~L~~i~vg~~~-----------~s~~Y~~~~~~~~~~~Gi~~~--~~~l~~~~~~~~l~~~i~~Ln~ 88 (283)
T PRK14192 32 RTPILATILVGDDP-----------ASATYVRMKGNACRRVGMDSL--KVELPQETTTEQLLAKIEELNA 88 (283)
T ss_pred CCCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34488889999841 124567778888999998764 5667 4888899999988764
No 29
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.80 E-value=1.4e+02 Score=24.17 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=40.9
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||++. ..-.....-.++.|+.|...+ .+.+| ++.+.+...+..++.
T Consensus 32 ~~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 32 IEPALAVILVGNDP-----------ASQVYVRNKILRAEEAGIRSL--EHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred CCCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 34488889999841 123456677788999999875 57787 788899999888864
No 30
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.34 E-value=1.5e+02 Score=23.83 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=40.5
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||++. ..-....--.++.|+.|+..+ .+.+| ++.++|...+..++.
T Consensus 31 ~~P~Laii~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 87 (284)
T PRK14190 31 IVPGLAVILVGDDP-----------ASHSYVRGKKKAAEKVGIYSE--LYEFPADITEEELLALIDRLNA 87 (284)
T ss_pred CCCeEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34477788899741 124456677888999999865 57788 778889999888864
No 31
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.10 E-value=1.5e+02 Score=23.84 Aligned_cols=55 Identities=16% Similarity=0.392 Sum_probs=39.6
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
++.+-..|.||++. ..-....--.++.++.|+..+ .+.+| ++.++|...+..++.
T Consensus 30 ~~P~La~I~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (282)
T PRK14180 30 ITPKLVAIIVGNDP-----------ASKTYVASKEKACAQVGIDSQ--VITLPEHTTESELLELIDQLNN 86 (282)
T ss_pred CCCeEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34478889999741 113356667778899999875 56777 677889999888864
No 32
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=39.92 E-value=96 Score=20.04 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=33.1
Q ss_pred cHHHHHHHHhhHHhcCCccCCCceeeeCcHHHHHHHHHH
Q 036909 58 QPLFQDLLSRAEEEFGFNHPMGGLTIPCEENTFIDITSR 96 (100)
Q Consensus 58 hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~ 96 (100)
.|.=+++|+..-..||..-++|.|.+.++.+.|-.....
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~ 82 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHR 82 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHH
Confidence 577789999999999999877999999999988766554
No 33
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.83 E-value=1.3e+02 Score=24.10 Aligned_cols=53 Identities=23% Similarity=0.416 Sum_probs=39.8
Q ss_pred CCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 34 KGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 34 kG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+...|.||+.. ..-....--.++.+|.|++.+ .+.+| ++.++|...+..++.
T Consensus 34 P~Laii~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~ 88 (285)
T PRK10792 34 PGLAVVLVGSDP-----------ASQVYVASKRKACEEVGFVSR--SYDLPETTSEAELLALIDELNA 88 (285)
T ss_pred ceEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 377788899841 123456667788899999865 57787 889999999988864
No 34
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=38.67 E-value=13 Score=26.65 Aligned_cols=28 Identities=32% Similarity=0.677 Sum_probs=8.2
Q ss_pred CCCeEEEEEcCCCceEEE----------EeccccCcHHHH
Q 036909 33 PKGFLAVYVGETQRKRFL----------VPVSYLNQPLFQ 62 (100)
Q Consensus 33 pkG~~aVyVG~~~~~Rfv----------Vp~~~L~hP~F~ 62 (100)
..||+|+.|-. +.+|+ +|+-|||.|+-+
T Consensus 86 ~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 86 KQGYFPLLVPG--RAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp --SS--EEE----SSSSEEEEEEEESS----S--------
T ss_pred Ccccceeeccc--hhhhhhhhccCCCcceeeEEEeceeee
Confidence 47999999964 34555 688888888643
No 35
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=38.51 E-value=1.4e+02 Score=23.58 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=41.5
Q ss_pred CCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccC--------------CCceeeeCcHHHHHHHHHHh
Q 036909 34 KGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHP--------------MGGLTIPCEENTFIDITSRL 97 (100)
Q Consensus 34 kG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~--------------~G~L~IPC~~~~F~~vl~~l 97 (100)
.|++.|.-.++ +..+.+.++.-.-+....++.....-|+.+.+ .-+|+||...+.||.+++.|
T Consensus 45 ~~~~~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aI 121 (283)
T PRK10308 45 RGVVTVIPDIA-RHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAI 121 (283)
T ss_pred cEEEEEEEcCC-CceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence 45555555443 34566655553335555677777777776654 24699999999999998876
No 36
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.13 E-value=1.9e+02 Score=23.17 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=41.3
Q ss_pred CCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 33 PKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 33 pkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
+.+...|.||++. ..-....--.++.+|.|+..+ .+.+| ++.+.|...+..++.
T Consensus 32 ~p~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 32 QPGLAVILVGDNP-----------ASQVYVRNKVKACEDNGFHSL--KDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCeEEEEEeCCCc-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 3488889999841 124566777888999999875 57888 889999999998864
No 37
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.46 E-value=1.8e+02 Score=23.34 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=40.8
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||++. ..-.....-.++.++.|+..+ .+.+| ++.+.|...+..++.
T Consensus 30 ~~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (285)
T PRK14191 30 KRPKLAVILVGKDP-----------ASQTYVNMKIKACERVGMDSD--LHTLQENTTEAELLSLIKDLNT 86 (285)
T ss_pred CCCeEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34478888899841 123466777888999999875 57888 778899999988864
No 38
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.06 E-value=2e+02 Score=23.15 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=39.9
Q ss_pred CCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 33 PKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 33 pkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
+.+...|.||++. ..-....--.++.+++|+..+ .+.+| ++.++|...+..++.
T Consensus 30 ~P~Laii~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 30 TPTLAVVLVGSDP-----------ASEVYVRNKQRRAEDIGVRSL--MFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred CCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3478889999741 123456667788899999875 57777 888899999888864
No 39
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=35.01 E-value=1.1e+02 Score=18.99 Aligned_cols=54 Identities=22% Similarity=0.505 Sum_probs=37.0
Q ss_pred EEEEEcCCCceEEEEecccc--CcHHHHHHHHhhHHhcCCccCCC--ceeee-CcHHHHHHHHHHh
Q 036909 37 LAVYVGETQRKRFLVPVSYL--NQPLFQDLLSRAEEEFGFNHPMG--GLTIP-CEENTFIDITSRL 97 (100)
Q Consensus 37 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~~~~~G--~L~IP-C~~~~F~~vl~~l 97 (100)
+.+.||+ .++|-+.-..| ..|.|+.+++.. +.... + .+.++ |+...|+.++..+
T Consensus 13 ~~i~v~d--~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~~l~~~ 71 (111)
T PF00651_consen 13 VTIRVGD--GKTFYVHKNILAARSPYFRNLFEGS----KFKES-TVPEISLPDVSPEAFEAFLEYM 71 (111)
T ss_dssp EEEEETT--TEEEEE-HHHHHHHBHHHHHHHTTT----TSTTS-SEEEEEETTSCHHHHHHHHHHH
T ss_pred EEEEECC--CEEEeechhhhhccchhhhhccccc----ccccc-cccccccccccccccccccccc
Confidence 4566665 27888888877 458999999988 21212 3 35555 7899999998865
No 40
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=33.91 E-value=2.3e+02 Score=23.02 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=39.3
Q ss_pred CCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 33 PKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 33 pkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
..+...|.||+.. ..-....--.++.|+.|+..+ .+.+| ++.+.+...+..|+.
T Consensus 39 ~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~s~~el~~~I~~lN~ 94 (299)
T PLN02516 39 VPGLAVVIVGSRK-----------DSQTYVNMKRKACAEVGIKSF--DVDLPENISEAELISKVHELNA 94 (299)
T ss_pred CCeEEEEEECCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3488889999741 124566677888999999865 56776 677888888887764
No 41
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=33.48 E-value=1.6e+02 Score=20.07 Aligned_cols=56 Identities=14% Similarity=0.368 Sum_probs=35.9
Q ss_pred CCCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 31 DVPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 31 ~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.++.+...|+||++. ..-.......++.+++|..-. .+.+| ++.+.|...+..++.
T Consensus 27 ~~~P~Laii~vg~d~-----------~S~~Y~~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 27 GITPKLAIILVGDDP-----------ASISYVRSKQKAAEKLGIEFE--LIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp T---EEEEEEES--H-----------HHHHHHHHHHHHHHHHT-EEE--EEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCh-----------hHHHHHHHHHHHHHHcCCceE--EEECCCCcCHHHHHHHHHHHhC
Confidence 366788889999841 113467778888999998864 56776 677888888887764
No 42
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=32.22 E-value=56 Score=24.32 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccC
Q 036909 35 GFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHP 77 (100)
Q Consensus 35 G~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~ 77 (100)
|+++++||.+--.. .+-|...+|++...++++.+.+
T Consensus 1 g~lvlFiGAG~S~~-------~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAGVSVS-------SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCccccc-------cCCCChHHHHHHHHHHcCCccc
Confidence 78999999862122 5789999999999999987643
No 43
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.60 E-value=2.3e+02 Score=22.88 Aligned_cols=55 Identities=18% Similarity=0.362 Sum_probs=40.8
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+-..|+||+.. ..-....--.++.++.|+..+ .+.+| ++.++|+..+..++.
T Consensus 30 ~~P~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (295)
T PRK14174 30 KVPGLTVIIVGEDP-----------ASQVYVRNKAKSCKEIGMNST--VIELPADTTEEHLLKKIEDLNN 86 (295)
T ss_pred CCCeEEEEEeCCCh-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34488889999741 123466677788999999865 56777 788899999988864
No 44
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.29 E-value=2.5e+02 Score=22.58 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=40.5
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
++.+...|.||++. ..-....--.++.++.|+..+ .+.+| ++.+.+...+..++.
T Consensus 29 ~~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 29 VQTGLTVVRVGDDP-----------ASAIYVRGKRKDCEEVGITSV--EHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred CCCeEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44578889999841 123456667788899999875 57787 788889998888764
No 45
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.14 E-value=2.6e+02 Score=22.48 Aligned_cols=55 Identities=11% Similarity=0.323 Sum_probs=39.6
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||+.. ..-.....-.++.++.|+..+ .+.+| ++.+.+...+..|+.
T Consensus 30 ~~P~Laii~vgdd~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 86 (281)
T PRK14183 30 IVPGLAVILVGDDP-----------ASHTYVKMKAKACDRVGIYSI--THEMPSTISQKEILETIAMMNN 86 (281)
T ss_pred CCCeEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 44588899999741 124456777888999999864 46676 677788888888764
No 46
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=30.76 E-value=45 Score=25.29 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=29.0
Q ss_pred eEEEEeccccCcH--HHHHHHHhhHHhcCCccCCCceee
Q 036909 47 KRFLVPVSYLNQP--LFQDLLSRAEEEFGFNHPMGGLTI 83 (100)
Q Consensus 47 ~RfvVp~~~L~hP--~F~~LL~~aeEEfG~~~~~G~L~I 83 (100)
-+|.+|++||..+ .|++|+....+++.+.|.-+++.+
T Consensus 25 l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~ 63 (208)
T PF11876_consen 25 LSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAF 63 (208)
T ss_pred EEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEE
Confidence 5899999999872 499999999998777665455554
No 47
>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function.
Probab=30.18 E-value=1.4e+02 Score=20.54 Aligned_cols=26 Identities=8% Similarity=0.245 Sum_probs=22.0
Q ss_pred EEEeccccCcHHHHHHHHhhHHhcCC
Q 036909 49 FLVPVSYLNQPLFQDLLSRAEEEFGF 74 (100)
Q Consensus 49 fvVp~~~L~hP~F~~LL~~aeEEfG~ 74 (100)
++-.+..|.||.-+--++.-++|++.
T Consensus 2 ~~~~I~~L~~p~~R~kI~~nA~ql~L 27 (128)
T PF06544_consen 2 YVHHIKSLSNPKKRFKIDKNAKQLHL 27 (128)
T ss_pred EEEEeCcccCHHHHHHHHHHHHHhCC
Confidence 35567889999999999999999875
No 48
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=30.04 E-value=2.5e+02 Score=23.55 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=39.1
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
++.+...|.||++. ..-....--.++.|+.|+... .+.+| ++.+++...+..|+.
T Consensus 102 ~~P~LaiIlvG~dp-----------aS~~Yv~~k~K~~e~~GI~~~--~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 102 VVPGLAVILVGDRK-----------DSATYVRNKKKACDSVGINSF--EVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred CCCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHcC
Confidence 34488889999841 123456667788999999864 57777 667788888887764
No 49
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.52 E-value=2.6e+02 Score=22.38 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=39.8
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
++.+...|.||+.. ..-....--.++.++.|+..+ .+.+| ++.+.|...+..++.
T Consensus 31 ~~p~Laii~vg~~~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 31 FTPKLSVILVGNDG-----------ASQSYVRSKKKAAEKIGMISE--IVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred CCCeEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34478889999841 123456667788899999875 57777 778888888888764
No 50
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.35 E-value=3.1e+02 Score=21.96 Aligned_cols=55 Identities=22% Similarity=0.422 Sum_probs=40.3
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||++. ..-.....-.++.|+.|+..+ .+.+| ++.++|...+..++.
T Consensus 25 ~~P~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 81 (279)
T PRK14178 25 LYPRLATVIVGDDP-----------ASQMYVRMKHRACERVGIGSV--GIELPGDATTRTVLERIRRLNE 81 (279)
T ss_pred CCCeEEEEEeCCCh-----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34478889999841 123456667788999999875 57776 788899999888864
No 51
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.06 E-value=2.4e+02 Score=22.76 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=40.3
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||+.. ..-.....-.++.+|.|...+ .+.+| ++.+++...+..++.
T Consensus 30 ~~P~LaiI~vg~d~-----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (293)
T PRK14185 30 KRPHLAAILVGHDG-----------GSETYVANKVKACEECGFKSS--LIRYESDVTEEELLAKVRELNQ 86 (293)
T ss_pred CCCeEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34588899999841 113455667788999999865 57788 778889988888864
No 52
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=27.95 E-value=1.4e+02 Score=20.11 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccC------------CCceeeeCcHHHHHHHHHH
Q 036909 34 KGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHP------------MGGLTIPCEENTFIDITSR 96 (100)
Q Consensus 34 kG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~------------~G~L~IPC~~~~F~~vl~~ 96 (100)
.+--.=|||.+ .+-..|+-+ ..|.+|..+..+.++..+. ++-+.|.||.+ ..+++..
T Consensus 13 ~dg~l~Y~GG~-tr~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeD-l~~M~~e 81 (97)
T cd06410 13 PDGQLRYVGGE-TRIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDED-LKNMMEE 81 (97)
T ss_pred CCCCEEEcCCc-eEEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHH-HHHHHHh
Confidence 33345799985 466677765 3567777777777766541 24567888874 3444443
No 53
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=27.28 E-value=1.4e+02 Score=21.77 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=31.1
Q ss_pred HHHHHHHHhhHHhcCCccCCCceeeeCcHHHHHHHHHHhhc
Q 036909 59 PLFQDLLSRAEEEFGFNHPMGGLTIPCEENTFIDITSRLER 99 (100)
Q Consensus 59 P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l~~ 99 (100)
|.|....-..-++.|.+.+ |.-++|.+...-+.+...+++
T Consensus 19 P~iv~~~~~~l~~~g~~~e-GIFR~~g~~~~i~~l~~~l~~ 58 (196)
T cd04395 19 PLIVEVCCNIVEARGLETV-GIYRVPGNNAAISALQEELNR 58 (196)
T ss_pred ChHHHHHHHHHHHcCCCCc-cceeCCCcHHHHHHHHHHHhc
Confidence 5555555556678899887 999999999988888887764
No 54
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=27.13 E-value=68 Score=24.29 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=28.3
Q ss_pred eEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeeeCcHHH
Q 036909 47 KRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIPCEENT 89 (100)
Q Consensus 47 ~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~ 89 (100)
.+.++-.+-.. -.++.|++++++-.|...++-.+++||+...
T Consensus 33 ~g~I~d~~~~~-~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~ 74 (239)
T TIGR02529 33 DGIVVDFLGAV-EIVRRLKDTLEQKLGIELTHAATAIPPGTIE 74 (239)
T ss_pred CCeEEEhHHHH-HHHHHHHHHHHHHhCCCcCcEEEEECCCCCc
Confidence 44444443332 3588888888888888765567999987543
No 55
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.58 E-value=3.4e+02 Score=21.82 Aligned_cols=53 Identities=17% Similarity=0.350 Sum_probs=40.1
Q ss_pred CCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 34 KGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 34 kG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+...|.||+.. ..-.....-.++.|++|+..+ .+.+| ++.++|...+..|+.
T Consensus 30 P~Laii~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 84 (287)
T PRK14173 30 PHLRVVRLGEDP-----------ASVSYVRLKDRQAKALGLRSQ--VEVLPESTSQEELLELIARLNA 84 (287)
T ss_pred CcEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 378889999841 113456677788999999875 67888 888999999988864
No 56
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=26.52 E-value=2.8e+02 Score=23.02 Aligned_cols=45 Identities=22% Similarity=0.456 Sum_probs=33.7
Q ss_pred CCCCCeEEEEEcCC-------------------CceEEEEeccc--cCcHHHHHHHHhhHHhcCCc
Q 036909 31 DVPKGFLAVYVGET-------------------QRKRFLVPVSY--LNQPLFQDLLSRAEEEFGFN 75 (100)
Q Consensus 31 ~vpkG~~aVyVG~~-------------------~~~RfvVp~~~--L~hP~F~~LL~~aeEEfG~~ 75 (100)
..+++.+.|.||.. +.-|++||++| =|.-..++..+.+.+-||-+
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~ 206 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE 206 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc
Confidence 34778899999941 23599999999 56667777777778888843
No 57
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=26.19 E-value=1.1e+02 Score=25.28 Aligned_cols=50 Identities=18% Similarity=0.393 Sum_probs=36.7
Q ss_pred ceEEEEeccccCc--HHHHHHHHh---hHHhcCCccCCCceeeeCcHHHHHHHHHHhhc
Q 036909 46 RKRFLVPVSYLNQ--PLFQDLLSR---AEEEFGFNHPMGGLTIPCEENTFIDITSRLER 99 (100)
Q Consensus 46 ~~RfvVp~~~L~h--P~F~~LL~~---aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l~~ 99 (100)
++=|..|.+.|-. ..|++.|.. +.++.. + =.|.+-||+..|+.++..+++
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~---~-idisVhCDv~iF~WLm~yv~~ 67 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE---E-IDISVHCDVHIFEWLMRYVKG 67 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCC---C-cceEEecChhHHHHHHHHhhc
Confidence 5778888888754 569999965 333322 2 358899999999999987754
No 58
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=26.15 E-value=95 Score=20.03 Aligned_cols=40 Identities=18% Similarity=0.400 Sum_probs=24.1
Q ss_pred HHHHHHHhhhhhhcCCCCcCCCCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhh
Q 036909 11 AKQILRQSALTAKKGASTSLDVPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRA 68 (100)
Q Consensus 11 ~k~~l~r~~~~~~~~~s~~~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~a 68 (100)
.+++.+-|=-.+| =|+|++++++ +..|| ..+.+.+||++-
T Consensus 12 ~~~~a~l~~~iGN-----------rH~p~~i~~~---~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 12 PKEMARLAYHIGN-----------RHWPLFIEED---ELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp HHHHHHHHHHHHH-----------TT--EEEETT---EEEEE------HHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-----------CccceEEcCC---EEEec----CcHHHHHHHHHC
Confidence 3445555555555 4889999983 78888 566677777763
No 59
>PF14317 YcxB: YcxB-like protein
Probab=25.80 E-value=1.3e+02 Score=16.78 Aligned_cols=31 Identities=16% Similarity=0.509 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCceEEEEeccccCcHHHHHHH
Q 036909 33 PKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLL 65 (100)
Q Consensus 33 pkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL 65 (100)
-+.++-+|+++ ..-++||.+.++.-...++.
T Consensus 28 ~~~~~~l~~~~--~~~~~iPk~~f~~~e~~~f~ 58 (62)
T PF14317_consen 28 TKDYFYLYLGK--NQAFIIPKRAFSEEEKEEFR 58 (62)
T ss_pred eCCEEEEEECC--CeEEEEEHHHCCHhHHHHHH
Confidence 46788889987 38999999999844444443
No 60
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=25.51 E-value=35 Score=19.47 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=13.5
Q ss_pred HHHHHHhhHHhc--CCccC
Q 036909 61 FQDLLSRAEEEF--GFNHP 77 (100)
Q Consensus 61 F~~LL~~aeEEf--G~~~~ 77 (100)
+-.+|+..+||| ||-|+
T Consensus 12 Id~vLe~NAe~FV~~fVQK 30 (33)
T TIGR03687 12 IDGVLESNAEEFVRGFVQK 30 (33)
T ss_pred HHHHHHHhHHHHHHHHHHc
Confidence 456788888998 88887
No 61
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.74 E-value=3.8e+02 Score=21.69 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=40.1
Q ss_pred CCCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 32 VPKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 32 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
.+.+...|.||+.. ..-....--.++.++.|++.+ .+.+| ++.+.+...+..++.
T Consensus 30 ~~P~LaiI~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~lN~ 86 (297)
T PRK14167 30 VTPGLATVLMSDDP-----------ASETYVSMKQRDCEEVGIEAI--DVEIDPDAPAEELYDTIDELNA 86 (297)
T ss_pred CCceEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 34478888999841 123456667788899999875 57787 778889998888864
No 62
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.39 E-value=3.6e+02 Score=21.77 Aligned_cols=54 Identities=15% Similarity=0.327 Sum_probs=40.1
Q ss_pred CCCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeee--CcHHHHHHHHHHhhc
Q 036909 33 PKGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIP--CEENTFIDITSRLER 99 (100)
Q Consensus 33 pkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IP--C~~~~F~~vl~~l~~ 99 (100)
..+-..|.||++. ..-.....-.++.++.|+... .+.+| ++.+++...+..++.
T Consensus 33 ~P~LaiI~vg~d~-----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~t~~el~~~I~~lN~ 88 (297)
T PRK14168 33 VPGLVTILVGESP-----------ASLSYVTLKIKTAHRLGFHEI--QDNQSVDITEEELLALIDKYNN 88 (297)
T ss_pred CCeEEEEEeCCCH-----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHHhC
Confidence 3488889999841 123466677888999999864 56676 888999999988864
No 63
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=23.79 E-value=2.3e+02 Score=23.83 Aligned_cols=44 Identities=34% Similarity=0.570 Sum_probs=34.2
Q ss_pred CCCCCeEEEEEcC-------------------CCceEEEEecccc--CcHHHHHHHHhhHHhcCC
Q 036909 31 DVPKGFLAVYVGE-------------------TQRKRFLVPVSYL--NQPLFQDLLSRAEEEFGF 74 (100)
Q Consensus 31 ~vpkG~~aVyVG~-------------------~~~~RfvVp~~~L--~hP~F~~LL~~aeEEfG~ 74 (100)
..+++-+.|.||. ++..|++||++|= |.-...++.+.+++-||-
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~ 244 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGA 244 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCc
Confidence 3467899999994 1348999999996 456788888888888884
No 64
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=23.46 E-value=1.8e+02 Score=17.56 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=34.3
Q ss_pred ceEEEEeccccCcHHHHHHHHhhHHhcCCc----------cCCCceeeeCcHHHHHHHHHHhh
Q 036909 46 RKRFLVPVSYLNQPLFQDLLSRAEEEFGFN----------HPMGGLTIPCEENTFIDITSRLE 98 (100)
Q Consensus 46 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~----------~~~G~L~IPC~~~~F~~vl~~l~ 98 (100)
.+||.+|. .++.|.+|..+..+.|++. .++-.++|.++ +.|+..+....
T Consensus 11 ~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~ 69 (81)
T cd05992 11 IRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEAR 69 (81)
T ss_pred CEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHh
Confidence 58999997 7788999999988888874 12224556665 46666666543
No 65
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=22.89 E-value=1.3e+02 Score=20.07 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=23.1
Q ss_pred eEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeeeC
Q 036909 47 KRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIPC 85 (100)
Q Consensus 47 ~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC 85 (100)
+||=|=+. .+++|+.++.+-|....++++++|=+
T Consensus 14 ~k~GV~A~-----sL~eL~~K~~~~l~l~~~~~~~~lvL 47 (80)
T cd06536 14 KQHGVAAS-----SLEELRIKACESLGFDSSSAPITLVL 47 (80)
T ss_pred eeEeEEcC-----CHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 55555543 46899999999999984423455544
No 66
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=22.69 E-value=60 Score=25.65 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.9
Q ss_pred cHHHHHHHHhhHHhcCCccCCCceeee
Q 036909 58 QPLFQDLLSRAEEEFGFNHPMGGLTIP 84 (100)
Q Consensus 58 hP~F~~LL~~aeEEfG~~~~~G~L~IP 84 (100)
|-+|-++++.+.+|-+|..+ |||+|-
T Consensus 38 EE~F~~mMdEl~~ee~F~~~-GpL~iq 63 (224)
T COG4862 38 EELFYEMMDELNLEEDFKDE-GPLWIQ 63 (224)
T ss_pred HHHHHHHHHhcCCccccccC-CceEEE
Confidence 57899999999999999887 999874
No 67
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=22.49 E-value=44 Score=22.26 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=17.9
Q ss_pred CceeeeCcHHHHHHHHHHhh
Q 036909 79 GGLTIPCEENTFIDITSRLE 98 (100)
Q Consensus 79 G~L~IPC~~~~F~~vl~~l~ 98 (100)
..+.+-|+++.|++++..|.
T Consensus 65 ~~i~f~c~~e~L~~Li~~Lk 84 (95)
T cd04751 65 PDINFTCTLEQLQDLVNKLK 84 (95)
T ss_pred ceEEEEeCHHHHHHHHHHHH
Confidence 47999999999999999875
No 68
>PF05041 Pecanex_C: Pecanex protein (C-terminus); InterPro: IPR007735 This family consists of pecanex protein homologues. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila [].; GO: 0016021 integral to membrane
Probab=21.54 E-value=83 Score=24.77 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHhhhhhhcCCCCcCCCCCCeEEEEEcC
Q 036909 5 LPGFILAKQILRQSALTAKKGASTSLDVPKGFLAVYVGE 43 (100)
Q Consensus 5 ~~~~~~~k~~l~r~~~~~~~~~s~~~~vpkG~~aVyVG~ 43 (100)
+.||-..+++||..--. +++.|=|| |+||..
T Consensus 190 R~SIQ~~~~~LRNl~~q-------s~d~PlGY-PiYvSP 220 (232)
T PF05041_consen 190 RYSIQNHKQLLRNLINQ-------SADPPLGY-PIYVSP 220 (232)
T ss_pred cccccchHHHHHHHHHh-------hccCCCCc-ceEecc
Confidence 34566666666655444 36899999 999985
No 69
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=21.06 E-value=2.8e+02 Score=23.04 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCceEEEEeccccCcHHHHHHHHhhHHhcCCccCCCceeeeCcHHHH
Q 036909 34 KGFLAVYVGETQRKRFLVPVSYLNQPLFQDLLSRAEEEFGFNHPMGGLTIPCEENTF 90 (100)
Q Consensus 34 kG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F 90 (100)
.+...||+|.+. -..|+.+.+.+|++...+.|++..+ ..+++-|+...+
T Consensus 102 ~~v~~i~fgGGT-------Ps~l~~~~l~~ll~~i~~~~~~~~~-~e~tie~~p~~l 150 (453)
T PRK13347 102 RRVSQLHWGGGT-------PTILNPDQFERLMAALRDAFDFAPE-AEIAVEIDPRTV 150 (453)
T ss_pred CeEEEEEEcCcc-------cccCCHHHHHHHHHHHHHhCCCCCC-ceEEEEeccccC
Confidence 467788998764 2467789999999999999988654 457777775544
No 70
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=20.66 E-value=1.4e+02 Score=20.35 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=24.3
Q ss_pred HHHHHhhHHhcCCccCCCceeeeCcHHHHHHHHHHhh
Q 036909 62 QDLLSRAEEEFGFNHPMGGLTIPCEENTFIDITSRLE 98 (100)
Q Consensus 62 ~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l~ 98 (100)
.+|-++..+-.|..|| ||-.+.|..++-..+
T Consensus 45 ~~Ly~~lc~~~G~~~D------pCvldvfr~av~~a~ 75 (93)
T PF11731_consen 45 EELYERLCALTGQRHD------PCVLDVFRCAVYFAN 75 (93)
T ss_pred HHHHHHHHHHcCCcCC------cHHHHHHHHHHHHHc
Confidence 4566666777788887 899999999987654
No 71
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=20.61 E-value=45 Score=28.02 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=17.7
Q ss_pred CCCCCCeEEEEEcCC-CceEEEEec
Q 036909 30 LDVPKGFLAVYVGET-QRKRFLVPV 53 (100)
Q Consensus 30 ~~vpkG~~aVyVG~~-~~~RfvVp~ 53 (100)
--+|-|-|++|||-+ --..|.||+
T Consensus 88 I~IP~gSfv~Y~G~d~ie~~~~vP~ 112 (361)
T COG1759 88 IFIPHGSFVAYVGYDGIENEFEVPM 112 (361)
T ss_pred EEecCCceEEEecchhhhhcccCcc
Confidence 458999999999953 125677774
No 72
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=20.09 E-value=2.8e+02 Score=18.41 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=32.7
Q ss_pred ceEEEEeccccCcHHHHHHHHhhHHhcCCc--------cCCCceeeeCcHHHHHH
Q 036909 46 RKRFLVPVSYLNQPLFQDLLSRAEEEFGFN--------HPMGGLTIPCEENTFID 92 (100)
Q Consensus 46 ~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~--------~~~G~L~IPC~~~~F~~ 92 (100)
..||.++- -.++.|.+|..+-+.-|+++ .++-+++|.|+.+.=|.
T Consensus 11 ~~rf~~~~--~~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eLeE~ 63 (81)
T cd06396 11 SQSFLVSD--SENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEYEEA 63 (81)
T ss_pred EEEEEecC--CCCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhHHHH
Confidence 58999883 11457999999999999863 33458899998765443
No 73
>PF06344 Parecho_VpG: Parechovirus Genome-linked protein; InterPro: IPR009407 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C)) []. This entry consists of the genome-linked protein Vpg type P3B.; GO: 0019015 viral genome
Probab=20.05 E-value=55 Score=16.60 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=8.9
Q ss_pred CcCCCCCCeEEE
Q 036909 28 TSLDVPKGFLAV 39 (100)
Q Consensus 28 ~~~~vpkG~~aV 39 (100)
.+..-|||.|||
T Consensus 7 lp~~kpkgtfpv 18 (20)
T PF06344_consen 7 LPVAKPKGTFPV 18 (20)
T ss_pred ccccccCCcccc
Confidence 445568999987
Done!