BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036910
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 272 bits (696), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 126/204 (61%), Positives = 152/204 (74%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQ 168
+SPVK+QG CGSCWTFSTTG+LE+A A GK +SL+EQQLVDCAQ FNN GC GGLPSQ
Sbjct: 14 VSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQ 73
Query: 169 AFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRP 228
AFEYI+YN G+ E+ YPY G+D CKF + V D NIT+ E+ + AV L P
Sbjct: 74 AFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNP 133
Query: 229 VSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWG 288
VS AFEV + F Y+ G+YSST C TP VNHAV+AVGYG E+G+PYW++KNSWG WG
Sbjct: 134 VSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWG 193
Query: 289 DHGYFKMEMGKNMCGIATCASYPV 312
+GYF +E GKNMCG+A CASYP+
Sbjct: 194 MNGYFLIERGKNMCGLAACASYPI 217
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 136/221 (61%), Gaps = 8/221 (3%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
K + +R ++PVK+Q CGSCW FS TG+LE + GK +SLSEQ LVDC++ N
Sbjct: 3 KSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGN 62
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
QGCNGG ++AF+Y+K NGGLD+EE+YPY D +CK+ EN Q + G E
Sbjct: 63 QGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKEKA 122
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + F+FYKSG+Y C + +D H V+ VGYG E D
Sbjct: 123 LMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLD--HGVLVVGYGFEGANSDN 180
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 313
YWL+KNSWG WG +GY K+ K N CGIAT ASYP V
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 135/221 (61%), Gaps = 8/221 (3%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
K + +R ++PVK+Q CGS W FS TG+LE + GK +SLSEQ LVDC++ N
Sbjct: 3 KSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGN 62
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
QGCNGG ++AF+Y+K NGGLD+EE+YPY D +CK+ EN Q + G E
Sbjct: 63 QGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKEKA 122
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + F+FYKSG+Y C + +D H V+ VGYG E D
Sbjct: 123 LMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLD--HGVLVVGYGFEGANSDN 180
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCASYPVV 313
YWL+KNSWG WG +GY K+ K N CGIAT ASYP V
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 200 bits (508), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 141/215 (65%), Gaps = 4/215 (1%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++ VKDQG+CGS W FSTTG++E Y + IS SEQQLVDC++ + N G
Sbjct: 96 IDWRESGYVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNG 155
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GGL A++Y+K GL+TE +YPYT +G C+++ + +V + G+E EL+
Sbjct: 156 CGGGLMENAYQYLK-QFGLETESSYPYTAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELK 214
Query: 221 HAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIK 280
+ VG P +VA +V F Y+SG+Y S C +P+ VNHAV+AVGYG + G YW++K
Sbjct: 215 NLVGAEGPAAVAVDVESDFMMYRSGIYQSQTC--SPLRVNHAVLAVGYGTQGGTDYWIVK 272
Query: 281 NSWGENWGDHGYFKMEMGK-NMCGIATCASYPVVA 314
NSWG +WG+ GY +M + NMCGIA+ AS P+VA
Sbjct: 273 NSWGLSWGERGYIRMVRNRGNMCGIASLASLPMVA 307
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 133/221 (60%), Gaps = 9/221 (4%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGSCW FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 41 RSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 100
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 101 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKA 159
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E D
Sbjct: 160 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDN 217
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
YWL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 218 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 258
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 131/213 (61%), Gaps = 6/213 (2%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ YR ++PVK+QG CGSCW FS+ G+LE + GK ++LS Q LVDC N G
Sbjct: 104 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDG 161
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG + AF+Y++ N G+D+E+AYPY G++ C ++ + I G E L+
Sbjct: 162 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALK 221
Query: 221 HAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
AV V PVSVA + + F+FY GVY C + ++NHAV+AVGYG++ G +W+I
Sbjct: 222 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD--NLNHAVLAVGYGIQKGNKHWII 279
Query: 280 KNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 311
KNSWGENWG+ GY M K N CGIA AS+P
Sbjct: 280 KNSWGENWGNKGYILMARNKNNACGIANLASFP 312
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 133/221 (60%), Gaps = 9/221 (4%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGS W FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 95 RSVDWREKGYVTPVKNQGQCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGN 154
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 155 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKA 213
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E DG
Sbjct: 214 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDG 271
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
YWL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 272 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 312
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 133/221 (60%), Gaps = 9/221 (4%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGSCW FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 4 RSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 63
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 64 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKA 122
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E D
Sbjct: 123 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDN 180
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
YWL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 181 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 131/213 (61%), Gaps = 6/213 (2%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ YR ++PVK+QG CGSCW FS+ G+LE + GK ++LS Q LVDC N G
Sbjct: 5 IDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG + AF+Y++ N G+D+E+AYPY G+D C ++ + I G E L+
Sbjct: 63 CGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALK 122
Query: 221 HAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
AV V PVSVA + + F+FY GVY C + ++NHAV+AVGYG++ G +W+I
Sbjct: 123 RAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSD--NLNHAVLAVGYGIQKGNKHWII 180
Query: 280 KNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 311
KNSWGE+WG+ GY M K N CGIA AS+P
Sbjct: 181 KNSWGESWGNKGYILMARNKNNACGIANLASFP 213
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 131/213 (61%), Gaps = 6/213 (2%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ YR ++PVK+QG CGSCW FS+ G+LE + GK ++LS Q LVDC N G
Sbjct: 3 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDG 60
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG + AF+Y++ N G+D+E+AYPY G++ C ++ + I G E L+
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALK 120
Query: 221 HAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
AV V PVSVA + + F+FY GVY C + ++NHAV+AVGYG++ G +W+I
Sbjct: 121 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD--NLNHAVLAVGYGIQKGNKHWII 178
Query: 280 KNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 311
KNSWGENWG+ GY M K N CGIA AS+P
Sbjct: 179 KNSWGENWGNKGYILMARNKNNACGIANLASFP 211
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 133/221 (60%), Gaps = 9/221 (4%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGSCW FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 3 RSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 63 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKA 121
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E D
Sbjct: 122 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDN 179
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
YWL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 131/213 (61%), Gaps = 6/213 (2%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ YR ++PVK+QG CGSCW FS+ G+LE + GK ++LS Q LVDC N G
Sbjct: 7 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDG 64
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG + AF+Y++ N G+D+E+AYPY G++ C ++ + I G E L+
Sbjct: 65 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALK 124
Query: 221 HAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
AV V PVSVA + + F+FY GVY C + ++NHAV+AVGYG++ G +W+I
Sbjct: 125 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD--NLNHAVLAVGYGIQKGNKHWII 182
Query: 280 KNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 311
KNSWGENWG+ GY M K N CGIA AS+P
Sbjct: 183 KNSWGENWGNKGYILMARNKNNACGIANLASFP 215
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 133/221 (60%), Gaps = 9/221 (4%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGSCW FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 3 RSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 63 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKA 121
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E D
Sbjct: 122 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDN 179
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
YWL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 131/213 (61%), Gaps = 6/213 (2%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ YR ++PVK+QG CGSCW FS+ G+LE + GK ++LS Q LVDC N G
Sbjct: 4 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDG 61
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG + AF+Y++ N G+D+E+AYPY G++ C ++ + I G E L+
Sbjct: 62 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALK 121
Query: 221 HAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
AV V PVSVA + + F+FY GVY C + ++NHAV+AVGYG++ G +W+I
Sbjct: 122 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD--NLNHAVLAVGYGIQKGNKHWII 179
Query: 280 KNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 311
KNSWGENWG+ GY M K N CGIA AS+P
Sbjct: 180 KNSWGENWGNKGYILMARNKNNACGIANLASFP 212
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 131/213 (61%), Gaps = 6/213 (2%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ YR ++PVK+QG CGSCW FS+ G+LE + GK ++LS Q LVDC N G
Sbjct: 5 VDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG + AF+Y++ N G+D+E+AYPY G++ C ++ + I G E L+
Sbjct: 63 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALK 122
Query: 221 HAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
AV V PVSVA + + F+FY GVY C + ++NHAV+AVGYG++ G +W+I
Sbjct: 123 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD--NLNHAVLAVGYGIQKGNKHWII 180
Query: 280 KNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 311
KNSWGENWG+ GY M K N CGIA AS+P
Sbjct: 181 KNSWGENWGNKGYILMARNKNNACGIANLASFP 213
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 132/221 (59%), Gaps = 9/221 (4%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGS W FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 99 RSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 158
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 159 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKA 217
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E D
Sbjct: 218 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDN 275
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
YWL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 276 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 131/213 (61%), Gaps = 6/213 (2%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ YR ++PVK+QG CGSCW FS+ G+LE +A G ++L+ Q LVDC N G
Sbjct: 5 IDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVS--ENDG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG + AF+Y++ N G+D+E+AYPY G+D C ++ + I G E L+
Sbjct: 63 CGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEAALK 122
Query: 221 HAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
AV V PVSVA + + F+FY +GVY C + + NHAV+AVGYG++ G +W+I
Sbjct: 123 RAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDAL--NHAVLAVGYGIQAGNKHWII 180
Query: 280 KNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 311
KNSWGE+WG+ GY M K N CGIA AS+P
Sbjct: 181 KNSWGESWGNAGYILMARNKNNACGIANLASFP 213
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 132/221 (59%), Gaps = 9/221 (4%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGS W FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 4 RSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 63
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 64 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKA 122
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E D
Sbjct: 123 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDN 180
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
YWL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 181 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 132/221 (59%), Gaps = 9/221 (4%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGS W FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 3 RSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 63 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKA 121
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E D
Sbjct: 122 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDN 179
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
YWL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 129/213 (60%), Gaps = 6/213 (2%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ YR ++PVK+QG CGSCW FS+ G+LE + GK ++LS Q LVDC N G
Sbjct: 5 VDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVS--ENDG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG + AF+Y++ N G+D+E+AYPY G++ C ++ + I G E L+
Sbjct: 63 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALK 122
Query: 221 HAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
AV V PVSVA + + F+FY GVY C + ++NHAV+AVGYG G +W+I
Sbjct: 123 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSD--NLNHAVLAVGYGESKGNKHWII 180
Query: 280 KNSWGENWGDHGYFKMEMGK-NMCGIATCASYP 311
KNSWGENWG GY KM K N CGIA AS+P
Sbjct: 181 KNSWGENWGMGGYIKMARNKNNACGIANLASFP 213
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 132/221 (59%), Gaps = 9/221 (4%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGS W FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 3 RSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 63 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKA 121
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E D
Sbjct: 122 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDN 179
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
YWL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 132/221 (59%), Gaps = 9/221 (4%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGS W FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 3 RSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 63 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKA 121
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DG 273
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E D
Sbjct: 122 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFESTESDD 179
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
YWL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 124/206 (60%), Gaps = 4/206 (1%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQ 168
+S VKDQG CGS W+FSTTG++E G+ SLSEQ L+DC+ ++ N GC+GG
Sbjct: 127 VSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDS 186
Query: 169 AFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRP 228
AF YI ++ G+ +E AYPY + C+F S + ++ G E+ L AVG P
Sbjct: 187 AFSYI-HDYGIMSESAYPYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGP 245
Query: 229 VSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWG 288
V+VA + D +FY G++ C + D+NH V+ VGYG ++G YW++KNSWG WG
Sbjct: 246 VAVAIDATDELQFYSGGLFYDQTCNQS--DLNHGVLVVGYGSDNGQDYWILKNSWGSGWG 303
Query: 289 DHGYFKMEMG-KNMCGIATCASYPVV 313
+ GY++ N CGIAT ASYP +
Sbjct: 304 ESGYWRQVRNYGNNCGIATAASYPAL 329
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 135/218 (61%), Gaps = 6/218 (2%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CG+ + FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 3 RSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + + V+I E
Sbjct: 63 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDVGFVDIPK-QEKA 121
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYG-VEDGVPY 276
L AV V P+SVA + + F FYK G+Y S+ + +NHA++ VGYG + + Y
Sbjct: 122 LMKAVATVGPISVAIDAGHESFLFYKEGIYFSSD--CSSSSLNHAMLVVGYGFISNNQKY 179
Query: 277 WLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
WL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 180 WLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 130/218 (59%), Gaps = 14/218 (6%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R + PVK+QG CGSCW FST ++E G ISLSEQQLVDC A N G
Sbjct: 7 IDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA--NHG 64
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDEL 219
C GG + AF++I NGG+++EE YPY G+DG+C S+ N V +DS N+ E L
Sbjct: 65 CRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICN-STVNAPVVSIDSYENVPSHNEQSL 123
Query: 220 QHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWL 278
Q AV +PVSV + F+ Y+SG+++ G+ + NHA+ VGYG E+ +W+
Sbjct: 124 QKAVAN-QPVSVTMDAAGRDFQLYRSGIFT----GSCNISANHALTVVGYGTENDKDFWI 178
Query: 279 IKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 312
+KNSWG+NWG+ GY + E CGI ASYPV
Sbjct: 179 VKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 128/217 (58%), Gaps = 10/217 (4%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R + +KDQG CGSCW FST ++E A G ISLSEQ+LVDC + N +G
Sbjct: 5 VDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRG 64
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDEL 219
C+GG + F++I NGG++TE YPYT ++G C + +D+ N+ E L
Sbjct: 65 CDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWAL 124
Query: 220 QHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWL 278
Q AV +PVSVA E F+ Y SG+++ CG V+HAV VGYG E G+ YW+
Sbjct: 125 QTAVAY-QPVSVALEAAGYNFQHYSSGIFTG-PCGTA---VDHAVTIVGYGTEGGIDYWI 179
Query: 279 IKNSWGENWGDHGYFKMEM---GKNMCGIATCASYPV 312
+KNSWG WG+ GY +++ G CGIA ASYPV
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 127/219 (57%), Gaps = 13/219 (5%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++ VKDQG CGSCW FST ++E K +SLSEQ+LVDC NQG
Sbjct: 6 VDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDC-DTDQNQG 64
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDS-VNITLGAEDEL 219
CNGGL AFE+IK GG+ TE YPY DG C S EN +D N+ E+ L
Sbjct: 65 CNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENAL 124
Query: 220 QHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGVPYW 277
AV +PVSVA + F+FY GV++ + CG +++H V VGYG DG YW
Sbjct: 125 LKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS-CG---TELDHGVAIVGYGTTIDGTKYW 179
Query: 278 LIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 312
+KNSWG WG+ GY +ME G + +CGIA ASYP+
Sbjct: 180 TVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 122/208 (58%), Gaps = 7/208 (3%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGI--SLSEQQLVDCAQAFNNQGCNGGLP 166
+SPVK+QG CGS W FS+TG++E+ A G G S+SEQQLVDC N GC+GG
Sbjct: 128 VSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVP--NALGCSGGWM 185
Query: 167 SQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLV 226
+ AF Y+ NGG+D+E AYPY DG C + V ++ V ++ E+ L V
Sbjct: 186 NDAFTYVAQNGGIDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATK 245
Query: 227 RPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PV+VAF+ D F Y GVY + C HAV+ VGYG E+G YWL+KNSWG+
Sbjct: 246 GPVAVAFDADDPFGSYSGGVYYNPTCETNKF--THAVLIVGYGNENGQDYWLVKNSWGDG 303
Query: 287 WGDHGYFKM-EMGKNMCGIATCASYPVV 313
WG GYFK+ N CGIA AS P +
Sbjct: 304 WGLDGYFKIARNANNHCGIAGVASVPTL 331
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+CW FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 13 VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 72
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 73 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCRKYTELPYGREDVLKEAVANKG 132
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 133 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 190 FGEKGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+CW FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 16 VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 75
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 76 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 135
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 136 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 192
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 193 FGEEGYIRMARNKGNHCGIASFPSYPEI 220
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+CW FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 14 VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 73
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 74 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 133
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 134 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 190
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 191 FGEEGYIRMARNKGNHCGIASFPSYPEI 218
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+CW FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 13 VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 72
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 73 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 132
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 133 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 190 FGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R + +K QG CG CW FS ++E G ISLSEQ+L+DC + N +G
Sbjct: 5 VDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRG 64
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDEL 219
CNGG + F++I NGG++TEE YPYT +DG C +N +D+ N+ E L
Sbjct: 65 CNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNNEWAL 124
Query: 220 QHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWL 278
Q AV +PVSVA + D F+ Y SG+++ CG ++HAV VGYG E G+ YW+
Sbjct: 125 QTAV-TYQPVSVALDAAGDAFKQYSSGIFTG-PCGTA---IDHAVTIVGYGTEGGIDYWI 179
Query: 279 IKNSWGENWGDHGYFKMEM---GKNMCGIATCASYPV 312
+KNSW WG+ GY ++ G CGIAT SYPV
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+CW FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 14 VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 73
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 74 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 133
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 134 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 190
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 191 FGEEGYIRMARNKGNHCGIASFPSYPEI 218
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+CW FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 13 VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 72
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 73 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 132
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 133 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 190 FGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 130/222 (58%), Gaps = 16/222 (7%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++ VKDQG CGSCW FST S+E G +SLSEQ+L+DC A +N G
Sbjct: 8 VDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA-DNDG 66
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFS----SENVGVQVLDSVNITLGAE 216
C GGL AFEYIK NGGL TE AYPY G C + + V V + ++ +E
Sbjct: 67 CQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSE 126
Query: 217 DELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV-EDGV 274
++L AV +PVSVA E F FY GV++ +CG +++H V VGYGV EDG
Sbjct: 127 EDLARAVAN-QPVSVAVEASGKAFMFYSEGVFTG-ECG---TELDHGVAVVGYGVAEDGK 181
Query: 275 PYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 312
YW +KNSWG +WG+ GY ++E +CGIA ASYPV
Sbjct: 182 AYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 121/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+CW FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 13 VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMT 72
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S + G ED L+ AV
Sbjct: 73 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSAYRAATCRKYTELPYGREDVLKEAVANKG 132
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 133 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 190 FGEKGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 122/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+CW FS G+LEA GK ++LS Q LVDC+ + + N+GCNGG +
Sbjct: 13 VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMT 72
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 73 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 132
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 133 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 190 FGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 127/217 (58%), Gaps = 10/217 (4%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R + +KDQG CGS W FST ++E A G ISLSEQ+LVDC + N +G
Sbjct: 5 VDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRG 64
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDEL 219
C+GG + F++I NGG++TE YPYT ++G C + +D+ N+ E L
Sbjct: 65 CDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWAL 124
Query: 220 QHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWL 278
Q AV +PVSVA E F+ Y SG+++ CG V+HAV VGYG E G+ YW+
Sbjct: 125 QTAVAY-QPVSVALEAAGYNFQHYSSGIFTG-PCGTA---VDHAVTIVGYGTEGGIDYWI 179
Query: 279 IKNSWGENWGDHGYFKMEM---GKNMCGIATCASYPV 312
+KNSWG WG+ GY +++ G CGIA ASYPV
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 121/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+ W FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 111 VTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 170
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 171 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 230
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 231 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 287
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 288 FGEEGYIRMARNKGNHCGIASFPSYPEI 315
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 121/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+ W FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 14 VTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 73
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 74 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 133
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 134 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 190
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 191 FGEEGYIRMARNKGNHCGIASFPSYPEI 218
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 121/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+ W FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 13 VTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 72
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 73 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 132
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 133 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 190 FGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 121/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+ W FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 15 VTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 74
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 75 TAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 134
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 135 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 191
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 192 FGEEGYIRMARNKGNHCGIASFPSYPEI 219
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 132/216 (61%), Gaps = 16/216 (7%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQ 168
I+ VK QG CGS W FS TG++EAA+ A G +SLSEQ+L+DC ++GC G Q
Sbjct: 14 ITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVD--ESEGCYNGWHYQ 71
Query: 169 AFEYIKYNGGLDTEEAYPYTGKDGVCKFSS-------ENVGVQVLDSVNITLGAEDELQH 221
+FE++ +GG+ +E YPY +DG CK + +N GVQ+L + + AE LQ
Sbjct: 72 SFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQS 131
Query: 222 AVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKN 281
V L +P+SV+ + D F FY G+Y C ++P +NH V+ VGYG EDGV YW+ KN
Sbjct: 132 FV-LEQPISVSIDAKD-FHFYSGGIYDGGNC-SSPYGINHFVLIVGYGSEDGVDYWIAKN 188
Query: 282 SWGENWGDHGYFKMEMGK----NMCGIATCASYPVV 313
SWGE+WG GY +++ +CG+ ASYP++
Sbjct: 189 SWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPII 224
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 121/208 (58%), Gaps = 6/208 (2%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCA-QAFNNQGCNGGLPS 167
++ VK QG CG+ W FS G+LEA GK +SLS Q LVDC+ + + N+GCNGG +
Sbjct: 13 VTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMT 72
Query: 168 QAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVR 227
AF+YI N G+D++ +YPY D C++ S+ + G ED L+ AV
Sbjct: 73 TAFQYIIDNKGIDSDASYPYKAMDLKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKG 132
Query: 228 PVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PVSV + F Y+SGVY C +VNH V+ VGYG +G YWL+KNSWG N
Sbjct: 133 PVSVGVDARHPSFFLYRSGVYYEPSC---TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHN 189
Query: 287 WGDHGYFKMEMGK-NMCGIATCASYPVV 313
+G+ GY +M K N CGIA+ SYP +
Sbjct: 190 FGEEGYIRMARNKGNHCGIASFPSYPEI 217
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 135/220 (61%), Gaps = 11/220 (5%)
Query: 100 GLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQ 159
G+ +R ++PVKDQ CGSCW FSTTG+LE A+ GK +SLSEQ+L+DC++A NQ
Sbjct: 10 GVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQ 69
Query: 160 GCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDEL 219
C+GG + AF+Y+ +GG+ +E+AYPY +D C+ S V++L ++ +E +
Sbjct: 70 SCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVVKILGFKDVPRRSEAAM 129
Query: 220 QHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV--EDGVPY 276
+ A+ PVS+A E F+FY GV+ ++ CG D++H V+ VGYG E +
Sbjct: 130 KAALA-KSPVSIAIEADQMPFQFYHEGVFDAS-CGT---DLDHGVLLVGYGTDKESKKDF 184
Query: 277 WLIKNSWGENWGDHGYFKMEMGK---NMCGIATCASYPVV 313
W++KNSWG WG GY M M K CG+ AS+PV+
Sbjct: 185 WIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 126/217 (58%), Gaps = 10/217 (4%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R + +K QG CG W FS ++E G ISLSEQ+L+DC + N +G
Sbjct: 5 VDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQNTRG 64
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDEL 219
C+GG + F++I +GG++TEE YPYT +DG C + ++ +D+ N+ E L
Sbjct: 65 CDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNNEWAL 124
Query: 220 QHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWL 278
Q AV +PVSVA + D F+ Y SG+++ CG V+HA+V VGYG E GV YW+
Sbjct: 125 QTAV-TYQPVSVALDAAGDAFKQYASGIFTG-PCGTA---VDHAIVIVGYGTEGGVDYWI 179
Query: 279 IKNSWGENWGDHGYFKMEM---GKNMCGIATCASYPV 312
+KNSW WG+ GY ++ G CGIAT SYPV
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 124/219 (56%), Gaps = 13/219 (5%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++ +K+Q CGSCW FS ++E+ G+ ISLSEQ+LVDC A + G
Sbjct: 5 VDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA--SHG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
CNGG + AF+YI NGG+DT++ YPY+ G CK V V + +T E LQ
Sbjct: 63 CNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRV-VSINGFQRVTRNNESALQ 121
Query: 221 HAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
AV +PVSV E F+ Y SG+++ CG NH VV VGYG + G YW++
Sbjct: 122 SAVA-SQPVSVTVEAAGAPFQHYSSGIFTG-PCGTAQ---NHGVVIVGYGTQSGKNYWIV 176
Query: 280 KNSWGENWGDHGYFKMEMG----KNMCGIATCASYPVVA 314
+NSWG+NWG+ GY ME +CGIA SYP A
Sbjct: 177 RNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTKA 215
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 129/213 (60%), Gaps = 8/213 (3%)
Query: 103 YRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCN 162
+R ++ VKDQG CGSCW FS TG++E + G +SLSEQ+L+DC + ++ C
Sbjct: 7 WRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM--DKACM 64
Query: 163 GGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHA 222
GGLPS A+ IK GGL+TE+ Y Y G C+FS+E V + DSV ++ ++E + A
Sbjct: 65 GGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELS---QNEQKLA 121
Query: 223 VGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIK 280
L + P+SVA G +FY+ G+ + +P ++HAV+ VGYG VP+W IK
Sbjct: 122 AWLAKRGPISVAINAF-GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIK 180
Query: 281 NSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 313
NSWG +WG+ GY+ + G CG+ T AS VV
Sbjct: 181 NSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 213
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 124/217 (57%), Gaps = 16/217 (7%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R + P+K+QG CGSCW FST ++E+ G ISLSEQQLVDC++ N G
Sbjct: 5 VDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSK--KNHG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG +A++YI NGG+DTE YPY G C+ + + V + V E+ L+
Sbjct: 63 CKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAKKVVRIDGCKGVPQC--NENALK 120
Query: 221 HAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
+AV +P VA + F+ YK G+++ CG +NH VV VGYG + YW++
Sbjct: 121 NAVA-SQPSVVAIDASSKQFQHYKGGIFTGP-CG---TKLNHGVVIVGYGKD----YWIV 171
Query: 280 KNSWGENWGDHGYFKMEM--GKNMCGIATCASYPVVA 314
+NSWG +WG+ GY +M+ G +CGIA YP A
Sbjct: 172 RNSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYPTKA 208
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 145 bits (366), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 135/229 (58%), Gaps = 28/229 (12%)
Query: 102 SYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGC 161
+RL ++PVKDQ +CGSCW FS+ GS+E+ Y K I+LSEQ+LVDC +F N GC
Sbjct: 23 DWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC--SFKNYGC 80
Query: 162 NGGLPSQAFEYIKYNGGLDTEEAYPY-TGKDGVCKFS--SENVGVQVLDSVNITLGAEDE 218
NGGL + AFE + GG+ + YPY + +C +E G++ SV +++
Sbjct: 81 NGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSV-----PDNK 135
Query: 219 LQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP--- 275
L+ A+ + P+S++ V D F FYK G++ +CG+ +NHAV+ VG+G+++ V
Sbjct: 136 LKEALRFLGPISISVAVSDDFAFYKEGIFDG-ECGDQ---LNHAVMLVGFGMKEIVNPLT 191
Query: 276 -------YWLIKNSWGENWGDHGYFKMEMGKN----MCGIATCASYPVV 313
Y++IKNSWG+ WG+ G+ +E ++ CG+ T A P++
Sbjct: 192 KKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI 240
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 121/217 (55%), Gaps = 16/217 (7%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVK+QG CGSCW FST ++E+ G ISLSEQQLVDC + N G
Sbjct: 5 IDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNK--KNHG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG A++YI NGG+DTE YPY G C+ + + V + V E+ L+
Sbjct: 63 CKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAKKVVRIDGYKGVPHC--NENALK 120
Query: 221 HAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
AV +P VA + F+ YKSG++S CG +NH VV VGY + YW++
Sbjct: 121 KAVA-SQPSVVAIDASSKQFQHYKSGIFSGP-CG---TKLNHGVVIVGYWKD----YWIV 171
Query: 280 KNSWGENWGDHGYFKMEM--GKNMCGIATCASYPVVA 314
+NSWG WG+ GY +M+ G +CGIA YP A
Sbjct: 172 RNSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYPTKA 208
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 134/229 (58%), Gaps = 28/229 (12%)
Query: 102 SYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGC 161
+RL ++PVKDQ +CGS W FS+ GS+E+ Y K I+LSEQ+LVDC +F N GC
Sbjct: 22 DWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDC--SFKNYGC 79
Query: 162 NGGLPSQAFEYIKYNGGLDTEEAYPY-TGKDGVCKFS--SENVGVQVLDSVNITLGAEDE 218
NGGL + AFE + GG+ + YPY + +C +E G++ SV +++
Sbjct: 80 NGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSV-----PDNK 134
Query: 219 LQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP--- 275
L+ A+ + P+S++ V D F FYK G++ +CG+ +NHAV+ VG+G+++ V
Sbjct: 135 LKEALRFLGPISISVAVSDDFAFYKEGIFDG-ECGDQ---LNHAVMLVGFGMKEIVNPLT 190
Query: 276 -------YWLIKNSWGENWGDHGYFKMEMGKN----MCGIATCASYPVV 313
Y++IKNSWG+ WG+ G+ +E ++ CG+ T A P++
Sbjct: 191 KKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLI 239
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/174 (44%), Positives = 104/174 (59%), Gaps = 4/174 (2%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGSCW FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 3 RSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 63 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKA 121
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE 271
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E
Sbjct: 122 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFE 173
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 120/217 (55%), Gaps = 16/217 (7%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVK+QG CGSCW FST ++E+ G ISLSEQ+LVDC + N G
Sbjct: 5 IDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK--KNHG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG A++YI NGG+DT+ YPY G C+ +S+ V + + V E L+
Sbjct: 63 CLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSIDGYNGVPFC--NEXALK 120
Query: 221 HAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLI 279
AV V+P +VA + F+ Y SG++S CG +NH V VGY YW++
Sbjct: 121 QAVA-VQPSTVAIDASSAQFQQYSSGIFSG-PCG---TKLNHGVTIVGYQAN----YWIV 171
Query: 280 KNSWGENWGDHGYFKMEM--GKNMCGIATCASYPVVA 314
+NSWG WG+ GY +M G +CGIA YP A
Sbjct: 172 RNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPTKA 208
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 103/174 (59%), Gaps = 4/174 (2%)
Query: 99 KGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNN 158
+ + +R ++PVK+QG CGS W FS TG+LE + G+ ISLSEQ LVDC+ N
Sbjct: 3 RSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGN 62
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDE 218
+GCNGGL AF+Y++ NGGLD+EE+YPY + CK++ + V+I E
Sbjct: 63 EGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKA 121
Query: 219 LQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE 271
L AV V P+SVA + + F FYK G+Y C + MD H V+ VGYG E
Sbjct: 122 LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD--HGVLVVGYGFE 173
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 123/218 (56%), Gaps = 18/218 (8%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVK+Q CGSCW FST ++E G+ ISLSEQ+L+DC + + G
Sbjct: 5 IDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCER--RSHG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C+GG + + +Y+ N G+ TE YPY K G C+ + + G +V + + A DE+
Sbjct: 63 CDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCR-AKDKKGPKVYITGYKYVPANDEIS 120
Query: 221 HAVGLV-RPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWL 278
+ +PVSV + GF+FYK G+Y CG + +HAV AVGYG Y L
Sbjct: 121 LIQAIANQPVSVVTDSRGRGFQFYKGGIYEGP-CG---TNTDHAVTAVGYGKT----YLL 172
Query: 279 IKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 312
+KNSWG NWG+ GY +++ K CG+ T + +P+
Sbjct: 173 LKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 118/220 (53%), Gaps = 17/220 (7%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++ VKDQG CGSCW FS G++E + A +LSEQ LV C + + G
Sbjct: 5 VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDK--TDSG 62
Query: 161 CNGGLPSQAFEYI--KYNGGLDTEEAYPYTGKDGV---CKFSSENVGVQVLDSVNITLGA 215
C+GGL + AFE+I + NG + TE++YPY +G+ C S VG + V +
Sbjct: 63 CSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVEL---P 119
Query: 216 EDELQHAVGLV--RPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 273
+DE Q A L PV+VA + + Y GV T C + +D H V+ VGY
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA-SSWMTYTGGVM--TSCVSEALD--HGVLLVGYNDSAA 174
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 313
VPYW+IKNSW WG+ GY ++ G N C + AS VV
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 119/220 (54%), Gaps = 17/220 (7%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++ VKDQG CGSCW FS G++E + A +LSEQ LV C + + G
Sbjct: 5 VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDK--TDSG 62
Query: 161 CNGGLPSQAFEYI--KYNGGLDTEEAYPYTGKDGV---CKFSSENVGVQVLDSVNITLGA 215
C+GGL + AFE+I + NG + TE++YPY +G+ C S VG + V +
Sbjct: 63 CSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVEL---P 119
Query: 216 EDELQHAVGLV--RPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 273
+DE Q A L PV+VA + + Y GV +S C + +D H V+ VGY
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA-SSWMTYTGGVMTS--CVSEQLD--HGVLLVGYNDSAA 174
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 313
VPYW+IKNSW WG+ GY ++ G N C + AS VV
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 134 bits (336), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 127/252 (50%), Gaps = 30/252 (11%)
Query: 77 EEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQ 136
E++ ++ LD I +RL ++PVKDQ CGSCW FS+ GS+E+ Y
Sbjct: 6 EDVIKKYKPADAKLDRI------AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAI 59
Query: 137 AFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGK-DGVCK 195
SEQ+LVDC + N GC GG + AF+ + GGL +++ YPY C
Sbjct: 60 RKKALFLFSEQELVDC--SVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCN 117
Query: 196 FSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNT 255
N + V+I +D+ + A+ + P+S++ D F FY+ G Y +CG
Sbjct: 118 LKRCNERYTIKSYVSI---PDDKFKEALRYLGPISISIAASDDFAFYRGGFYDG-ECGAA 173
Query: 256 PMDVNHAVVAVGYGVED----------GVPYWLIKNSWGENWGDHGYFKMEMGKN----M 301
P NHAV+ VGYG++D Y++IKNSWG +WG+ GY +E +N
Sbjct: 174 P---NHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKT 230
Query: 302 CGIATCASYPVV 313
C I T A P++
Sbjct: 231 CSIGTEAYVPLL 242
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 119/220 (54%), Gaps = 17/220 (7%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++ VKDQG CGSCW FS G++E + A +L+EQ LV C + + G
Sbjct: 5 VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDK--TDSG 62
Query: 161 CNGGLPSQAFEYI--KYNGGLDTEEAYPYTGKDGV---CKFSSENVGVQVLDSVNITLGA 215
C+GGL + AFE+I + NG + TE++YPY +G+ C S VG + V +
Sbjct: 63 CSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP--- 119
Query: 216 EDELQHAVGLV--RPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 273
+DE Q A L PV+VA + + Y GV +S C + +D H V+ VGY
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA-SSWMTYTGGVMTS--CVSEQLD--HGVLLVGYNDGAA 174
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 313
VPYW+IKNSW WG+ GY ++ G N C + AS VV
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 119/220 (54%), Gaps = 17/220 (7%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++ VKDQG CGSCW FS G++E + A +L+EQ LV C + + G
Sbjct: 5 VDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDK--TDSG 62
Query: 161 CNGGLPSQAFEYI--KYNGGLDTEEAYPYTGKDGV---CKFSSENVGVQVLDSVNITLGA 215
C+GGL + AFE+I + NG + TE++YPY +G+ C S VG + V +
Sbjct: 63 CSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP--- 119
Query: 216 EDELQHAVGLV--RPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 273
+DE Q A L PV+VA + + Y GV +S C + +D H V+ VGY
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA-SSWMTYTGGVMTS--CVSEQLD--HGVLLVGYNDGAA 174
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 313
VPYW+IKNSW WG+ GY ++ G N C + AS VV
Sbjct: 175 VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 115/218 (52%), Gaps = 13/218 (5%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVKDQG CGSCW FST G++E + A +SLSEQ LV C + G
Sbjct: 5 VDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTI--DFG 62
Query: 161 CNGGLPSQAFEYI-KYNGG-LDTEEAYPYTGKDG---VCKFSSENVGVQVLDSVNITLGA 215
C GGL AF +I NGG + TE +YPY +G C+ + +G + D V++
Sbjct: 63 CGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQD- 121
Query: 216 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP 275
ED + + P+++A + F Y G+ +S T ++H V+ VGY P
Sbjct: 122 EDAIAAYLAENGPLAIAVDATS-FMDYNGGILTSC----TSEQLDHGVLLVGYNDASNPP 176
Query: 276 YWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 313
YW+IKNSW WG+ GY ++E G N C + S VV
Sbjct: 177 YWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVV 214
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 99/342 (28%), Positives = 151/342 (44%), Gaps = 87/342 (25%)
Query: 41 GLRDFETSVLQVIGQARHALS--------FARFARRYGKIYESVEEMKLRFATFSKNLDL 92
G D + ++G +++ L+ F + ++ KIY++++E RF F NL
Sbjct: 37 GTDDDDKMDFSIVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKY 96
Query: 93 IRSTNCKGLSYRLGLNI------------------------------------------- 109
I TN K SY LGLN+
Sbjct: 97 IDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYV 156
Query: 110 --------SPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGC 161
+PVK+QG CGS W FS ++E+ G SEQ+L+DC + + GC
Sbjct: 157 DWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDR--RSYGC 214
Query: 162 NGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK------FSSENVGVQVLDSVNITLGA 215
NGG P A + + G+ YPY G C+ ++++ GV+ + N
Sbjct: 215 NGGYPWSALQLVA-QYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN----- 268
Query: 216 EDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV 274
E L +++ +PVSV E F+ Y+ G++ CGN V+HAV AVGYG
Sbjct: 269 EGALLYSIA-NQPVSVVLEAAGKDFQLYRGGIFVGP-CGNK---VDHAVAAVGYGPN--- 320
Query: 275 PYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 312
Y LI+NSWG WG++GY +++ G +CG+ T + YPV
Sbjct: 321 -YILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 361
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 137/309 (44%), Gaps = 68/309 (22%)
Query: 62 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLN------------- 108
F + + K YE+V+E RF F NL+ I TN K SY LGLN
Sbjct: 22 FNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEK 81
Query: 109 -------------------------------------ISPVKDQGHCGSCWTFSTTGSLE 131
++PV+ QG CGSCW FS ++E
Sbjct: 82 YVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVE 141
Query: 132 AAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKD 191
GK + LSEQ+LVDC + + GC GG P A EY+ N G+ YPY K
Sbjct: 142 GINKIRTGKLVELSEQELVDCER--RSHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQ 198
Query: 192 GVCKFSSENVGVQVLDSV---NITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVY 247
G C+ ++ VG ++ + + E L +A+ +PVSV E F+ YK G++
Sbjct: 199 GTCR--AKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIF 255
Query: 248 SSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCG 303
CG V+ AV AVGYG G Y LIKNSWG WG+ GY +++ +CG
Sbjct: 256 EGP-CG---TKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCG 311
Query: 304 IATCASYPV 312
+ + YP
Sbjct: 312 LYKSSYYPT 320
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 111/219 (50%), Gaps = 12/219 (5%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++ VKDQG CG CW F TG++E G+ IS+SEQQ+VDC
Sbjct: 5 IDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXXXX- 63
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
GG AF ++ NGG+ ++ YPYTG DG C ++ + ++ N+ + L
Sbjct: 64 -XGGDADDAFRWVITNGGIASDANYPYTGVDGTCDL-NKPIAARIDGYTNVP-NSSSALL 120
Query: 221 HAVGLVRPVSV-AFEVVDGFRFYK-SGVYSSTKCGNTPMDVNHAVVAVGYGVE-DGVPYW 277
AV +PVSV + F+ Y G+++ + C + P V+H V+ VGYG YW
Sbjct: 121 DAVAK-QPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYW 179
Query: 278 LIKNSWGENWGDHGYFKMEMGKN----MCGIATCASYPV 312
++KNSWG WG GY + N +C I SYP
Sbjct: 180 IVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPT 218
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 115/215 (53%), Gaps = 14/215 (6%)
Query: 106 GLN-ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGIS--LSEQQLVDCAQAFNNQGCN 162
G+N +SPV++Q CGSC++F++ G LEA + LS Q++V C+Q QGC
Sbjct: 218 GINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQY--AQGCE 275
Query: 163 GGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSE--NVGVQVLDSVNITLGAEDELQ 220
GG P + GL E +PYTG D CK + V G +E
Sbjct: 276 GGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEAL 335
Query: 221 HAVGLVR--PVSVAFEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVED--G 273
+ LV P++VAFEV D F YK G+Y T + P ++ NHAV+ VGYG + G
Sbjct: 336 MKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASG 395
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 308
+ YW++KNSWG WG++GYF++ G + C I + A
Sbjct: 396 MDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIA 430
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 14/217 (6%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVK+QG CGS W FST ++E G + LSEQ+LVDC + ++ G
Sbjct: 5 IDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDK--HSYG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQ 220
C GG + + +Y+ N G+ T + YPY K C+ +++ G +V + + + E
Sbjct: 63 CKGGYQTTSLQYVA-NNGVHTSKVYPYQAKQYKCR-ATDKPGPKVKITGYKRVPSNXETS 120
Query: 221 HAVGLV-RPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWL 278
L +P+SV E F+ YKSGV+ CG ++HAV AVGYG DG Y +
Sbjct: 121 FLGALANQPLSVLVEAGGKPFQLYKSGVFDGP-CG---TKLDHAVTAVGYGTSDGKNYII 176
Query: 279 IKNSWGENWGDHGYFKMEM----GKNMCGIATCASYP 311
IKNSWG NWG+ GY +++ + CG+ + YP
Sbjct: 177 IKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 213
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 128/249 (51%), Gaps = 31/249 (12%)
Query: 76 VEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYH 135
+E++ + + ++ D N +G+++ +SPV++Q CGSC++F++ G LEA
Sbjct: 196 TDEIQQQILSLPESWDW---RNVRGINF-----VSPVRNQESCGSCYSFASLGMLEARIR 247
Query: 136 QAFGKGIS--LSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGV 193
+ LS Q++V C+ QGC+GG P + G+ E +PYT D
Sbjct: 248 ILTNNSQTPILSPQEVVSCSPY--AQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAP 305
Query: 194 CK--------FSSENVGVQVLDSV-NITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKS 244
CK +SSE V N L + ++H P++VAFEV D F Y S
Sbjct: 306 CKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHG-----PMAVAFEVHDDFLHYHS 360
Query: 245 GVYSSTKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGK 299
G+Y T + P ++ NHAV+ VGYG + G+ YW++KNSWG WG+ GYF++ G
Sbjct: 361 GIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGT 420
Query: 300 NMCGIATCA 308
+ C I + A
Sbjct: 421 DECAIESIA 429
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 115/220 (52%), Gaps = 18/220 (8%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PV+ QG CGSCW FS ++E GK + LSEQ+LVDC + + G
Sbjct: 5 VDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER--RSHG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV---NITLGAED 217
C GG P A EY+ N G+ YPY K G C+ ++ VG ++ + + E
Sbjct: 63 CKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCR--AKQVGGPIVKTSGVGRVQPNNEG 119
Query: 218 ELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPY 276
L +A+ +PVSV E F+ YK G++ CG V+HAV AVGYG G Y
Sbjct: 120 NLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP-CG---TKVDHAVTAVGYGKSGGKGY 174
Query: 277 WLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 312
LIKNSWG WG+ GY +++ +CG+ + YP
Sbjct: 175 ILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 114/220 (51%), Gaps = 18/220 (8%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PV+ QG CGSCW FS ++E GK + LSEQ+LVDC + + G
Sbjct: 5 VDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER--RSHG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV---NITLGAED 217
C GG P A EY+ N G+ YPY K G C+ ++ VG ++ + + E
Sbjct: 63 CKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCR--AKQVGGPIVKTSGVGRVQPNNEG 119
Query: 218 ELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPY 276
L +A+ +PVSV E F+ YK G++ CG V HAV AVGYG G Y
Sbjct: 120 NLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP-CG---TKVEHAVTAVGYGKSGGKGY 174
Query: 277 WLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 312
LIKNSWG WG+ GY +++ +CG+ + YP
Sbjct: 175 ILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPT 214
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 28/223 (12%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVK+QG CGSCW FS ++E G SEQ+L+DC + + G
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDR--RSYG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK------FSSENVGVQVLDSVNITLG 214
CNGG P A + + G+ YPY G C+ ++++ GV+ + N
Sbjct: 63 CNGGYPWSALQLVA-QYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---- 117
Query: 215 AEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 273
E L +++ +PVSV E F+ Y+ G++ CGN V+HAV AVGYG
Sbjct: 118 -EGALLYSIA-NQPVSVVLEAAGKDFQLYRGGIFVGP-CGN---KVDHAVAAVGYGPN-- 169
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 312
Y LIKNSWG WG++GY +++ G +CG+ T + YPV
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 28/223 (12%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVK+QG CGSCW FS ++E G SEQ+L+DC + + G
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR--RSYG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK------FSSENVGVQVLDSVNITLG 214
CNGG P A + + G+ YPY G C+ ++++ GV+ + N
Sbjct: 63 CNGGYPWSALQLVA-QYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---- 117
Query: 215 AEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 273
+ L +++ +PVSV + F+ Y+ G++ CGN V+HAV AVGYG
Sbjct: 118 -QGALLYSIA-NQPVSVVLQAAGKDFQLYRGGIFVGP-CGN---KVDHAVAAVGYGPN-- 169
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 312
Y LIKNSWG WG++GY +++ G +CG+ T + YPV
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 28/223 (12%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVK+QG CGSCW FS ++E G SEQ+L+DC + + G
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR--RSYG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK------FSSENVGVQVLDSVNITLG 214
CNGG P A + + G+ YPY G C+ ++++ GV+ + N
Sbjct: 63 CNGGYPWSALQLVA-QYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---- 117
Query: 215 AEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 273
+ L +++ +PVSV + F+ Y+ G++ CGN V+HAV AVGYG
Sbjct: 118 -QGALLYSIA-NQPVSVVLQAAGKDFQLYRGGIFVGP-CGN---KVDHAVAAVGYGPN-- 169
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 312
Y LIKNSWG WG++GY +++ G +CG+ T + YPV
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 28/223 (12%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVK+QG CGS W FS ++E G SEQ+L+DC + + G
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR--RSYG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK------FSSENVGVQVLDSVNITLG 214
CNGG P A + + G+ YPY G C+ ++++ GV+ + N
Sbjct: 63 CNGGYPWSALQLVA-QYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---- 117
Query: 215 AEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 273
E L +++ +PVSV E F+ Y+ G++ CGN V+HAV AVGYG
Sbjct: 118 -EGALLYSIA-NQPVSVVLEAAGKDFQLYRGGIFVGP-CGN---KVDHAVAAVGYGPN-- 169
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 312
Y LIKNSWG WG++GY +++ G +CG+ T + YPV
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 28/223 (12%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVK+QG CGS W FS ++E G SEQ+L+DC + + G
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDR--RSYG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK------FSSENVGVQVLDSVNITLG 214
CNGG P A + + G+ YPY G C+ ++++ GV+ + N
Sbjct: 63 CNGGYPWSALQLVA-QYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---- 117
Query: 215 AEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 273
E L +++ +PVSV E F+ Y+ G++ CGN V+HAV AVGYG
Sbjct: 118 -EGALLYSIA-NQPVSVVLEAAGKDFQLYRGGIFVGP-CGN---KVDHAVAAVGYGPN-- 169
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 312
Y LIKNSWG WG++GY +++ G +CG+ T + YPV
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 115/223 (51%), Gaps = 28/223 (12%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVK+QG CGS W FS ++E G SEQ+L+DC + + G
Sbjct: 5 VDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR--RSYG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK------FSSENVGVQVLDSVNITLG 214
CNGG P A + + G+ YPY G C+ ++++ GV+ + N
Sbjct: 63 CNGGYPWSALQLVA-QYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---- 117
Query: 215 AEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 273
+ L +++ +PVSV + F+ Y+ G++ CGN V+HAV AVGYG
Sbjct: 118 -QGALLYSIA-NQPVSVVLQAAGKDFQLYRGGIFVGP-CGN---KVDHAVAAVGYGPN-- 169
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 312
Y LIKNSWG WG++GY +++ G +CG+ T + YPV
Sbjct: 170 --YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 114/223 (51%), Gaps = 24/223 (10%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PVK QG+C SCW FST ++E G + LSEQ+LVDC + G
Sbjct: 5 VDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCD--LQSYG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSS------ENVGVQVLDSVNITLG 214
CN G S + +Y+ NG + YPY K C+ + + GV + S N
Sbjct: 63 CNRGYQSTSLQYVAQNG-IHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNN---- 117
Query: 215 AEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG 273
E L +A+ +PVSV E F+ YK G++ + CG V+HAV AVGYG G
Sbjct: 118 -EGSLLNAIAH-QPVSVVVESAGRDFQNYKGGIFEGS-CG---TKVDHAVTAVGYGKSGG 171
Query: 274 VPYWLIKNSWGENWGDHGYFKMEMGK----NMCGIATCASYPV 312
Y LIKNSWG WG++GY ++ +CG+ + YP+
Sbjct: 172 KGYILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 214
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 111/240 (46%), Gaps = 17/240 (7%)
Query: 60 LSFARFARRYGKIYESVEEMKLRFATFSK-NLDLIRSTNCKGLSYRLGLNISPVKDQGHC 118
LS F R+ E+ E +K +F ++ N I + R ++P++ QG C
Sbjct: 52 LSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGC 111
Query: 119 GSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGG 178
GS W FS + E+AY + + L+EQ+LVDCA + GC+G + EYI++NG
Sbjct: 112 GSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA---SQHGCHGDTIPRGIEYIQHNGV 168
Query: 179 LDTEEAYPYTGKDGVCK------FSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVA 232
+ E Y Y ++ C+ F N + N A + A+ ++ +
Sbjct: 169 VQ-ESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVI----IG 223
Query: 233 FEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGY 292
+ +D FR Y G P HAV VGY GV YW+++NSW NWGD+GY
Sbjct: 224 IKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 107/219 (48%), Gaps = 19/219 (8%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
L R ++P++ QG CGSCW FS + E+AY + LSEQ+LVDCA + G
Sbjct: 15 LDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCA---SQHG 71
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKF-SSENVGV----QVL-DSVNITLG 214
C+G + EYI+ NG ++ E +YPY ++ C+ +S++ G+ Q+ V
Sbjct: 72 CHGDTIPRGIEYIQQNGVVE-ERSYPYVAREQRCRRPNSQHYGISNYCQIYPPDVKQIRE 130
Query: 215 AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV 274
A + A+ ++ + + + F+ Y G P HAV VGYG G
Sbjct: 131 ALTQTHTAIAVI----IGIKDLRAFQHYDGRTIIQHDNGYQPN--YHAVNIVGYGSTQGD 184
Query: 275 PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 313
YW+++NSW WGD GY + G N+ I YP V
Sbjct: 185 DYWIVRNSWDTTWGDSGYGYFQAGNNLMMI---EQYPYV 220
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 97/198 (48%), Gaps = 16/198 (8%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ R ++P++ QG CGSCW FS + E+AY + + L+EQ+LVDCA + G
Sbjct: 14 IDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCA---SQHG 70
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVC------KFSSENVGVQVLDSVNITLG 214
C+G + EYI++NG + E Y Y ++ C +F N +VN
Sbjct: 71 CHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNVNKIRE 129
Query: 215 AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV 274
A + A+ ++ + + +D FR Y G P HAV VGY GV
Sbjct: 130 ALAQTHSAIAVI----IGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNIVGYSNAQGV 183
Query: 275 PYWLIKNSWGENWGDHGY 292
YW+++NSW NWGD+GY
Sbjct: 184 DYWIVRNSWDTNWGDNGY 201
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 118/218 (54%), Gaps = 18/218 (8%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ +R ++PV++QG CGSCWTFS+ ++E G+ +SLSEQ+L+DC + + G
Sbjct: 5 IDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCER--RSYG 62
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSV-NITLGAEDEL 219
C GG P A +Y+ N G+ + YPY G C+ S D V + E L
Sbjct: 63 CRGGFPLYALQYVA-NSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQAL 121
Query: 220 QHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWL 278
+ ++PVS+ E F+ Y+ G+++ CG + ++HAV AVGYG + Y L
Sbjct: 122 IQRI-AIQPVSIVVEAKGRAFQNYRGGIFAGP-CGTS---IDHAVAAVGYGND----YIL 172
Query: 279 IKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 312
IKNSWG WG+ GY +++ G + CG+ + + +P
Sbjct: 173 IKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPT 210
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ R ++P++ QG CGSCW FS + E+AY + + L+EQ+LVDCA + G
Sbjct: 14 IDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCA---SQHG 70
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVC------KFSSENVGVQVLDSVNITLG 214
C+G + EYI++NG + E Y Y ++ C +F N + N
Sbjct: 71 CHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIRE 129
Query: 215 AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV 274
A + A+ ++ + + +D FR Y G P HAV VGY GV
Sbjct: 130 ALAQTHSAIAVI----IGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNIVGYSNAQGV 183
Query: 275 PYWLIKNSWGENWGDHGY 292
YW+++NSW NWGD+GY
Sbjct: 184 DYWIVRNSWDTNWGDNGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 95/198 (47%), Gaps = 16/198 (8%)
Query: 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQG 160
+ R ++P++ QG CGS W FS + E+AY + + L+EQ+LVDCA + G
Sbjct: 14 IDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCA---SQHG 70
Query: 161 CNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCK------FSSENVGVQVLDSVNITLG 214
C+G + EYI++NG + E Y Y ++ C+ F N + N
Sbjct: 71 CHGDTIPRGIEYIQHNGVVQ-ESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIRE 129
Query: 215 AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGV 274
A + A+ ++ + + +D FR Y G P HAV VGY GV
Sbjct: 130 ALAQTHSAIAVI----IGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNIVGYSNAQGV 183
Query: 275 PYWLIKNSWGENWGDHGY 292
YW+++NSW NWGD+GY
Sbjct: 184 DYWIVRNSWDTNWGDNGY 201
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 117/258 (45%), Gaps = 45/258 (17%)
Query: 86 FSKNLDLIRSTNCKGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEA-----AYHQAFGK 140
F+++L L S + + + I ++DQG CGSCW F G++EA H
Sbjct: 58 FTEDLKLPASFDAR-EQWPQCPTIKEIRDQGSCGSCWAF---GAVEAISDRICIHTNAHV 113
Query: 141 GISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIK----YNGGLDTEEA--YPYT------ 188
+ +S + L+ C + GCNGG P++A+ + +GGL PY+
Sbjct: 114 SVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEH 173
Query: 189 ---GKDGVCKFSSENVGVQVL-----------------DSVNITLGAEDELQHAVGLVRP 228
G C + + +S +++ +E ++ + P
Sbjct: 174 HVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVS-NSEKDIMAEIYKNGP 232
Query: 229 VSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWG 288
V AF V F YKSGVY M HA+ +G+GVE+G PYWL+ NSW +WG
Sbjct: 233 VEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG 289
Query: 289 DHGYFKMEMGKNMCGIAT 306
D+G+FK+ G++ CGI +
Sbjct: 290 DNGFFKILRGQDHCGIES 307
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 116/260 (44%), Gaps = 49/260 (18%)
Query: 86 FSKNLDLIRSTNCKGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEA-----AYHQAFGK 140
FS++++L S + + + I+ ++DQG CGSCW F G++EA H
Sbjct: 1 FSEDINLPESFDAR-EQWSNCPTIAQIRDQGSCGSCWAF---GAVEAMSDRICIHTNGRV 56
Query: 141 GISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAY-------PYT----- 188
+ +S + L+ C GCNGG PS A+ + G L + Y PYT
Sbjct: 57 NVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKG-LVSGGVYNSHIGCLPYTIPPCE 115
Query: 189 ----GKDGVCKFSSENVGVQVLDSVNITLG----------------AEDELQHAVGLVRP 228
G C + + + +E E+ + P
Sbjct: 116 HHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGP 175
Query: 229 VSVAFEVVDGFRFYKSGVYSSTKCGNTPMDV--NHAVVAVGYGVEDGVPYWLIKNSWGEN 286
V AF V F YKSGVY + DV HA+ +G+G+E+GVPYWL+ NSW +
Sbjct: 176 VEGAFTVFSDFLTYKSGVYK-----HEAGDVMGGHAIRILGWGIENGVPYWLVANSWNAD 230
Query: 287 WGDHGYFKMEMGKNMCGIAT 306
WGD+G+FK+ G+N CGI +
Sbjct: 231 WGDNGFFKILRGENHCGIES 250
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 105/238 (44%), Gaps = 50/238 (21%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEA-----AYHQAFGKGISLSEQQLVDCAQAFNNQGCNG 163
I ++DQG CGSCW F G++EA H + +S + L+ C + GCNG
Sbjct: 19 IKEIRDQGSCGSCWAF---GAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNG 75
Query: 164 GLPSQAFEYIK----YNGGLDTEEA------------------YPYTGKDGVCKFSS--- 198
G P++A+ + +GGL P TG+ K S
Sbjct: 76 GYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICE 135
Query: 199 ----------ENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYS 248
++ G N +E ++ + PV AF V F YKSGVY
Sbjct: 136 PGYSPTYKQDKHYGYNSYSVSN----SEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ 191
Query: 249 STKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIAT 306
M HA+ +G+GVE+G PYWL+ NSW +WGD+G+FK+ G++ CGI +
Sbjct: 192 HV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 246
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 105/238 (44%), Gaps = 50/238 (21%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEA-----AYHQAFGKGISLSEQQLVDCAQAFNNQGCNG 163
I ++DQG CGSCW F G++EA H + +S + L+ C + GCNG
Sbjct: 17 IKEIRDQGSCGSCWAF---GAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNG 73
Query: 164 GLPSQAFEYIK----YNGGLDTEEA------------------YPYTGKDGVCKFSS--- 198
G P++A+ + +GGL P TG+ K S
Sbjct: 74 GYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICE 133
Query: 199 ----------ENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYS 248
++ G N +E ++ + PV AF V F YKSGVY
Sbjct: 134 PGYSPTYKQDKHYGYNSYSVSN----SEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ 189
Query: 249 STKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIAT 306
M HA+ +G+GVE+G PYWL+ NSW +WGD+G+FK+ G++ CGI +
Sbjct: 190 HV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 105/238 (44%), Gaps = 50/238 (21%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEA-----AYHQAFGKGISLSEQQLVDCAQAFNNQGCNG 163
I ++DQG CGSCW F G++EA H + +S + L+ C + GCNG
Sbjct: 18 IKEIRDQGSCGSCWAF---GAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNG 74
Query: 164 GLPSQAFEYIK----YNGGLDTEEA------------------YPYTGKDGVCKFSS--- 198
G P++A+ + +GGL P TG+ K S
Sbjct: 75 GYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICE 134
Query: 199 ----------ENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYS 248
++ G N +E ++ + PV AF V F YKSGVY
Sbjct: 135 PGYSPTYKQDKHYGYNSYSVSN----SEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ 190
Query: 249 STKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIAT 306
M HA+ +G+GVE+G PYWL+ NSW +WGD+G+FK+ G++ CGI +
Sbjct: 191 HV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 245
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 105/237 (44%), Gaps = 48/237 (20%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEA-----AYHQAFGKGISLSEQQLVDCAQAFNNQGCNG 163
I+ ++DQG CGSCW F G++EA H + +S + L+ C GCNG
Sbjct: 17 IAQIRDQGSCGSCWAF---GAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNG 73
Query: 164 GLPSQAFEYIKYNGGLDTEEAY-------PYT---------GKDGVCKFSSENVGVQVLD 207
G PS A+ + G L + Y PYT G C + +
Sbjct: 74 GYPSGAWNFWTRKG-LVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCNKMC 132
Query: 208 SVNITLG----------------AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTK 251
+ +E E+ + PV AF V F YKSGVY
Sbjct: 133 EAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYK--- 189
Query: 252 CGNTPMDV--NHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIAT 306
+ DV HA+ +G+G+E+GVPYWL+ NSW +WGD+G+FK+ G+N CGI +
Sbjct: 190 --HEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 244
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 115/261 (44%), Gaps = 51/261 (19%)
Query: 86 FSKNLDLIRSTNCKGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEA-----AYHQAFGK 140
F+++L L S + + + I ++DQG CGS W F G++EA H
Sbjct: 1 FTEDLKLPASFDAR-EQWPQCPTIKEIRDQGSCGSAWAF---GAVEAISDRICIHTNAHV 56
Query: 141 GISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNG----------------GLDTEEA 184
+ +S + L+ C + GCNGG P++A+ + G + EA
Sbjct: 57 SVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEA 116
Query: 185 Y------PYTGKDGVCKFSS-------------ENVGVQVLDSVNITLGAEDELQHAVGL 225
+ P TG+ K S ++ G N +E ++ +
Sbjct: 117 HVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN----SEKDIMAEIYK 172
Query: 226 VRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGE 285
PV AF V F YKSGVY M HA+ +G+GVE+G PYWL+ NSW
Sbjct: 173 NGPVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNT 229
Query: 286 NWGDHGYFKMEMGKNMCGIAT 306
+WGD+G+FK+ G++ CGI +
Sbjct: 230 DWGDNGFFKILRGQDHCGIES 250
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 34/223 (15%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFG-KGISLSEQQLVDCAQAFNNQGCNGGLPS 167
I + DQ CGSCW + ++ + G + + +S L+ C + GCNGG P
Sbjct: 110 IPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPD 168
Query: 168 QAFEYIKYNGGL-DTEEAYPYT-------GKDGV------------CKFSSENVGVQVLD 207
+A+ Y G + D + YP+ K+G C ++ ++ + V++
Sbjct: 169 RAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVN 228
Query: 208 SVNIT---LGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVY---SSTKCGNTPMDVNH 261
+ T L ED+ + P VAF+V + F Y SGVY S G H
Sbjct: 229 YRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGG------H 282
Query: 262 AVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 304
AV VG+G +GVPYW I NSW WG GYF + G + CGI
Sbjct: 283 AVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 325
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 115/260 (44%), Gaps = 49/260 (18%)
Query: 86 FSKNLDLIRSTNCKGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEA-----AYHQAFGK 140
FS++++L S + + + I+ ++DQG CGS W F G++EA H
Sbjct: 57 FSEDINLPESFDAR-EQWSNCPTIAQIRDQGSCGSSWAF---GAVEAMSDRICIHTNGRV 112
Query: 141 GISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAY-------PYT----- 188
+ +S + L+ C GCNGG PS A+ + G L + Y PYT
Sbjct: 113 NVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKG-LVSGGVYNSHIGCLPYTIPPCE 171
Query: 189 ----GKDGVCKFSSENVGVQVLDSVNITLG----------------AEDELQHAVGLVRP 228
G C + + + +E E+ + P
Sbjct: 172 HHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGP 231
Query: 229 VSVAFEVVDGFRFYKSGVYSSTKCGNTPMDV--NHAVVAVGYGVEDGVPYWLIKNSWGEN 286
V AF V F YKSGVY + DV HA+ +G+G+E+GVPYWL+ NSW +
Sbjct: 232 VEGAFTVFSDFLTYKSGVYK-----HEAGDVMGGHAIRILGWGIENGVPYWLVANSWNAD 286
Query: 287 WGDHGYFKMEMGKNMCGIAT 306
WGD+G+FK+ G+N CGI +
Sbjct: 287 WGDNGFFKILRGENHCGIES 306
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 34/223 (15%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFG-KGISLSEQQLVDCAQAFNNQGCNGGLPS 167
I + DQ CGSCW + ++ + G + + +S L+ C + GCNGG P
Sbjct: 88 IPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPD 146
Query: 168 QAFEYIKYNGGL-DTEEAYPYT-------GKDGV------------CKFSSENVGVQVLD 207
+A+ Y G + D + YP+ K+G C ++ ++ + V++
Sbjct: 147 RAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVN 206
Query: 208 SVNIT---LGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVY---SSTKCGNTPMDVNH 261
+ T L ED+ + P VAF+V + F Y SGVY S G H
Sbjct: 207 YRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGG------H 260
Query: 262 AVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 304
AV VG+G +GVPYW I NSW WG GYF + G + CGI
Sbjct: 261 AVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 303
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 34/223 (15%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFG-KGISLSEQQLVDCAQAFNNQGCNGGLPS 167
I + DQ CGSCW + ++ + G + + +S L+ C + GCNGG P
Sbjct: 87 IPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPD 145
Query: 168 QAFEYIKYNGGL-DTEEAYPYT-------GKDGV------------CKFSSENVGVQVLD 207
+A+ Y G + D + YP+ K+G C ++ ++ + V++
Sbjct: 146 RAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVN 205
Query: 208 SVNIT---LGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVY---SSTKCGNTPMDVNH 261
+ T L ED+ + P VAF+V + F Y SGVY S G H
Sbjct: 206 YRSWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGG------H 259
Query: 262 AVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 304
AV VG+G +GVPYW I NSW WG GYF + G + CGI
Sbjct: 260 AVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGI 302
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 106/234 (45%), Gaps = 40/234 (17%)
Query: 108 NISPVKDQGHCGSCWTFSTTGSL-EAAYHQAFGK-GISLSEQQLVDCAQAFNNQGCNGGL 165
+I+ ++DQ CGSCW F ++ + + Q+ GK + LS L+ C ++ GC GG+
Sbjct: 18 SIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCG-LGCEGGI 76
Query: 166 PSQAFEYIKYNG---GLDTE-----EAYPYTGKDGVCKFSSENVGVQVLD---------- 207
A++Y G G E E YP+ + K G ++
Sbjct: 77 LGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQK 136
Query: 208 ---------------SVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKC 252
S N+ E +Q + PV F V + F YKSG+Y
Sbjct: 137 KYKTPYTQDKHRGKSSYNVK-NDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHIT- 194
Query: 253 GNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIAT 306
G T HA+ +G+GVE+ PYWLI NSW E+WG++GYF++ G++ C I +
Sbjct: 195 GETLG--GHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIES 246
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 87/200 (43%), Gaps = 42/200 (21%)
Query: 142 ISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIK----YNGGLDTEEA------------- 184
+ +S + L+ C + GCNGG P++A+ + +GGL
Sbjct: 3 VEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHH 62
Query: 185 -----YPYTGKDGVCKFSS-------------ENVGVQVLDSVNITLGAEDELQHAVGLV 226
P TG+ K S ++ G N +E ++ +
Sbjct: 63 VNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN----SEKDIMAEIYKN 118
Query: 227 RPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGEN 286
PV AF V F YKSGVY M HA+ +G+GVE+G PYWL+ NSW +
Sbjct: 119 GPVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTD 175
Query: 287 WGDHGYFKMEMGKNMCGIAT 306
WGD+G+FK+ G++ CGI +
Sbjct: 176 WGDNGFFKILRGQDHCGIES 195
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 103/238 (43%), Gaps = 50/238 (21%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEA-----AYHQAFGKGISLSEQQLVDCAQAFNNQGCNG 163
I ++DQG CGSCW F G++EA H + +S + ++ C GCNG
Sbjct: 17 IKEIRDQGSCGSCWAF---GAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNG 73
Query: 164 GLPSQAFEYIK----YNGGLDTEEA------------------YPYTGKDGVCKFSS--- 198
G PS A+ + +GGL P TG+ K S
Sbjct: 74 GFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKTCE 133
Query: 199 ----------ENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYS 248
++ G N E E+ + PV AF V F YKSGVY
Sbjct: 134 PGYSPSYKEDKHFGCSSYSVAN----NEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ 189
Query: 249 STKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIAT 306
+ + HA+ +G+GVE+G PYWL+ NSW +WGD+G+FK+ G++ CGI +
Sbjct: 190 HV---SGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 103/238 (43%), Gaps = 50/238 (21%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEA-----AYHQAFGKGISLSEQQLVDCAQAFNNQGCNG 163
I ++DQG CGSCW F G++EA H + +S + ++ C GCNG
Sbjct: 17 IKEIRDQGSCGSCWAF---GAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNG 73
Query: 164 GLPSQAFEYIK----YNGGLDTEEA------------------YPYTGKDGVCKFSS--- 198
G PS A+ + +GGL P TG+ K S
Sbjct: 74 GEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKTCE 133
Query: 199 ----------ENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYS 248
++ G N E E+ + PV AF V F YKSGVY
Sbjct: 134 PGYSPSYKEDKHFGCSSYSVAN----NEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ 189
Query: 249 STKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIAT 306
+ + HA+ +G+GVE+G PYWL+ NSW +WGD+G+FK+ G++ CGI +
Sbjct: 190 HV---SGEIMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 244
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 106 GLN-ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGIS--LSEQQLVDCAQAFNNQGCN 162
G+N +SPV++Q CGSC++F++ G LEA + LS Q++V C+Q QGC
Sbjct: 12 GINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQY--AQGCE 69
Query: 163 GGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSE--NVGVQVLDSVNITLGAEDELQ 220
GG P + GL E +PYTG D CK + V G +E
Sbjct: 70 GGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEAL 129
Query: 221 HAVGLVR--PVSVAFEVVDGFRFYKSGVYSST 250
+ LV P++VAFEV D F YK G+Y T
Sbjct: 130 MKLELVHHGPMAVAFEVYDDFLHYKKGIYHHT 161
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 216 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVP 275
E E+ + PV AF V F YKSGVY + + HA+ +G+GVE+G P
Sbjct: 109 EKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHV---SGEIMGGHAIRILGWGVENGTP 165
Query: 276 YWLIKNSWGENWGDHGYFKMEMGKNMCGIAT 306
YWL+ NSW +WGD+G+FK+ G++ CGI +
Sbjct: 166 YWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 30/225 (13%)
Query: 91 DLIRSTNCKGLSYRLGLNISPVKDQGH----CGSCWTFSTTGSLEAAYH---QAFGKGIS 143
DL +S + + + G+N + + H CGSCW ++T ++ + +
Sbjct: 35 DLPKSWDWRNVD---GVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTL 91
Query: 144 LSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVC-KFSSENVG 202
LS Q ++DC A + C GG ++Y + G+ E Y KD C KF+
Sbjct: 92 LSVQNVIDCGNAGS---CEGGNDLSVWDY-AHQHGIPDETCNNYQAKDQECDKFNQCGTC 147
Query: 203 VQVLDSVNI------------TLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSST 250
+ + I +L +++ + P+S + Y G+Y+
Sbjct: 148 NEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEY 207
Query: 251 KCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKM 295
+ +NH V G+G+ DG YW+++NSWGE WG+ G+ ++
Sbjct: 208 Q---DTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 90/210 (42%), Gaps = 27/210 (12%)
Query: 106 GLNISPVKDQGH----CGSCWTFSTTGSLEAAYH---QAFGKGISLSEQQLVDCAQAFNN 158
G+N + + H CGSCW ++T ++ + + LS Q ++DC A +
Sbjct: 12 GVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGS- 70
Query: 159 QGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVC-KFSSENVGVQVLDSVNI------ 211
C GG ++Y + G+ E Y KD C KF+ + + I
Sbjct: 71 --CEGGNDLSVWDY-AHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLW 127
Query: 212 ------TLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVA 265
+L +++ + P+S + Y G+Y+ + +NH V
Sbjct: 128 RVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQ---DTTYINHVVSV 184
Query: 266 VGYGVEDGVPYWLIKNSWGENWGDHGYFKM 295
G+G+ DG YW+++NSWGE WG+ G+ ++
Sbjct: 185 AGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 63.5 bits (153), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 260 NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 308
NHAV+ VGYG + G+ YW++KNSWG WG++GYF++ G + C I + A
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIA 60
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 90/221 (40%), Gaps = 39/221 (17%)
Query: 112 VKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCN-GGLPSQAF 170
V+DQG+C + W F++ LE + +S + +C + + C+ G P +
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 171 EYIKYNGGLDTEEAYPYTG-KDGVCKFSSENVGVQVLDSVNITLGA-------------- 215
+ I+ G L E YPY K G E+ + + D+ I
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 216 -----EDELQHAVGLVRP---------VSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNH 261
D + V +++ + E V G+ F SG CG+ D H
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEF--SGKKVKNLCGDDTAD--H 200
Query: 262 AVVAVGYGVE-----DGVPYWLIKNSWGENWGDHGYFKMEM 297
AV VGYG + YW+++NSWG WGD GYFK++M
Sbjct: 201 AVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 241
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 90/221 (40%), Gaps = 39/221 (17%)
Query: 112 VKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCN-GGLPSQAF 170
V+DQG+C + W F++ LE + +S + +C + + C+ G P +
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 171 EYIKYNGGLDTEEAYPYTG-KDGVCKFSSENVGVQVLDSVNITLGA-------------- 215
+ I+ G L E YPY K G E+ + + D+ I
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 216 -----EDELQHAVGLVRP---------VSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNH 261
D + V +++ + E V G+ F SG CG+ D H
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEF--SGKKVQNLCGDDTAD--H 199
Query: 262 AVVAVGYGVE-----DGVPYWLIKNSWGENWGDHGYFKMEM 297
AV VGYG + YW+++NSWG WGD GYFK++M
Sbjct: 200 AVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDM 240
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 276 YWLIKNSWGENWGDHGYFKMEMG-KNMCGIATCASYPVV 313
YWL+KNSWGE WG GY KM +N CGIA+ ASYP V
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 229 VSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVN-------HAVVAVGYGVEDGVPYWLIKN 281
++V V GF Y S V +++ P+ HAV+ VGY +D + ++ I+N
Sbjct: 198 LAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGY--DDEIRHFRIRN 255
Query: 282 SWGENWGDHGYFKM 295
SWG N G+ GYF M
Sbjct: 256 SWGNNVGEDGYFWM 269
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 61 SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLN 108
+F+ F Y K Y + EE + R+A F NL I + N +G SY L +N
Sbjct: 24 AFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMN 71
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEA 132
I ++DQG CGSCW F G++EA
Sbjct: 17 IKEIRDQGSCGSCWAF---GAVEA 37
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 109 ISPVKDQGHCGSCWTFSTTGSLEA 132
I ++DQG CGSCW F G++EA
Sbjct: 17 IKEIRDQGSCGSCWAF---GAVEA 37
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between
Alpha- Naphthoflavone And Human Cytochrome P450 1b1
(Cyp1b1)
Length = 507
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 53 IGQARHALSFARFARRYGKIYE 74
+GQA H LSFAR ARRYG +++
Sbjct: 26 VGQAAH-LSFARLARRYGDVFQ 46
>pdb|2ACF|A Chain A, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|B Chain B, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|C Chain C, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
pdb|2ACF|D Chain D, Nmr Structure Of Sars-cov Non-structural Protein Nsp3a
(sars1) From Sars Coronavirus
Length = 182
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 158 NQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAED 217
N+ NG + ++ +YIK NG L G C S N+ + L V L A +
Sbjct: 60 NKATNGAMQKESDDYIKLNGPLTV---------GGSCLLSGHNLAKKCLHVVGPNLNAGE 110
Query: 218 ELQ 220
++Q
Sbjct: 111 DIQ 113
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 277 WLIKNSWGENWGDHGYFKM 295
W ++NSWGE+ G GY M
Sbjct: 391 WRVENSWGEDHGHKGYLCM 409
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 277 WLIKNSWGENWGDHGYFKM 295
W ++NSWGE+ G GY M
Sbjct: 391 WRVENSWGEDHGHKGYLCM 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,367,433
Number of Sequences: 62578
Number of extensions: 402683
Number of successful extensions: 1281
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 143
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)