Query 036910
Match_columns 314
No_of_seqs 317 out of 1768
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:37:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2.8E-76 6.1E-81 526.6 21.4 249 59-313 68-371 (372)
2 PTZ00203 cathepsin L protease; 100.0 6.4E-71 1.4E-75 513.2 30.6 245 60-312 36-339 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 1.5E-67 3.3E-72 504.5 26.9 247 58-313 165-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 5.2E-66 1.1E-70 492.3 26.7 244 59-313 123-445 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 3.7E-64 8E-69 464.7 26.3 244 66-313 30-324 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 5.1E-57 1.1E-61 404.0 21.7 200 109-311 17-240 (243)
7 cd02248 Peptidase_C1A Peptidas 100.0 1.3E-56 2.7E-61 392.6 22.0 199 109-311 12-210 (210)
8 cd02620 Peptidase_C1A_Cathepsi 100.0 2.2E-56 4.8E-61 397.9 20.8 195 109-309 16-234 (236)
9 cd02698 Peptidase_C1A_Cathepsi 100.0 1.1E-55 2.4E-60 394.1 21.8 195 109-312 16-237 (239)
10 PF00112 Peptidase_C1: Papain 100.0 3.6E-54 7.8E-59 378.4 18.5 201 109-312 14-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 7.5E-53 1.6E-57 411.6 21.6 201 109-312 397-675 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 2.3E-52 4.9E-57 404.2 21.3 197 109-309 220-455 (548)
13 PTZ00462 Serine-repeat antigen 100.0 3.8E-48 8.2E-53 388.2 21.2 202 109-313 544-781 (1004)
14 smart00645 Pept_C1 Papain fami 100.0 3.4E-48 7.4E-53 329.7 17.1 156 109-308 13-170 (174)
15 cd02619 Peptidase_C1 C1 Peptid 100.0 5.1E-47 1.1E-51 333.6 20.0 190 109-299 9-213 (223)
16 KOG1544 Predicted cysteine pro 100.0 6.9E-39 1.5E-43 283.2 7.3 198 109-309 223-456 (470)
17 COG4870 Cysteine protease [Pos 100.0 3.6E-29 7.7E-34 226.7 7.8 183 109-299 111-314 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 1.3E-26 2.9E-31 220.3 17.1 191 101-298 46-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.8 1.2E-19 2.7E-24 172.9 18.0 232 61-297 6-399 (438)
20 COG3579 PepC Aminopeptidase C 99.3 5.5E-11 1.2E-15 107.1 11.8 87 101-188 49-162 (444)
21 PF08246 Inhibitor_I29: Cathep 98.9 2.4E-09 5.2E-14 74.1 5.1 47 62-108 1-48 (58)
22 smart00848 Inhibitor_I29 Cathe 98.6 6.6E-08 1.4E-12 66.4 4.7 47 62-108 1-48 (57)
23 KOG4128 Bleomycin hydrolases a 98.3 6E-07 1.3E-11 81.2 3.4 78 109-187 62-168 (457)
24 PF13529 Peptidase_C39_2: Pept 97.4 0.0018 4E-08 51.8 10.4 127 111-283 4-144 (144)
25 PF05543 Peptidase_C47: Stapho 96.4 0.05 1.1E-06 45.6 10.3 120 113-284 17-145 (175)
26 PF09778 Guanylate_cyc_2: Guan 93.2 0.38 8.1E-06 41.9 7.2 63 215-281 112-180 (212)
27 PF14399 Transpep_BrtH: NlpC/p 91.0 0.61 1.3E-05 43.0 6.5 56 216-281 78-133 (317)
28 COG4990 Uncharacterized protei 87.3 1.4 3.1E-05 37.1 5.3 54 209-285 116-169 (195)
29 PF12385 Peptidase_C70: Papain 82.6 20 0.00044 29.7 9.8 39 215-271 97-135 (166)
30 PF05984 Cytomega_UL20A: Cytom 81.1 1.5 3.2E-05 32.1 2.4 20 1-20 1-20 (100)
31 cd02549 Peptidase_C39A A sub-f 79.2 6.8 0.00015 31.0 6.2 45 219-283 70-114 (141)
32 cd00044 CysPc Calpains, domain 75.7 9.8 0.00021 35.2 7.0 27 259-285 235-263 (315)
33 PF00648 Peptidase_C2: Calpain 48.0 29 0.00063 31.6 4.6 27 259-285 213-243 (298)
34 PF01640 Peptidase_C10: Peptid 40.0 1.5E+02 0.0033 25.2 7.5 52 217-294 141-192 (192)
35 smart00230 CysPc Calpain-like 38.4 58 0.0012 30.2 5.0 27 259-285 227-255 (318)
36 PF05887 Trypan_PARP: Procycli 37.8 11 0.00023 30.3 0.0 18 1-18 1-18 (143)
37 PF10731 Anophelin: Thrombin i 36.3 65 0.0014 22.1 3.5 13 1-13 1-13 (65)
38 COG1792 MreC Cell shape-determ 23.8 3.6E+02 0.0079 24.6 7.5 30 61-90 60-89 (284)
39 KOG3554 Histone deacetylase co 23.5 1.4E+02 0.0031 29.2 4.8 19 58-76 292-310 (693)
40 cd03581 NTR_Sfrp3_like NTR dom 23.2 84 0.0018 24.4 2.8 41 248-288 52-92 (111)
41 PF13085 Fer2_3: 2Fe-2S iron-s 20.7 88 0.0019 24.3 2.4 29 89-123 34-62 (110)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-76 Score=526.64 Aligned_cols=249 Identities=43% Similarity=0.810 Sum_probs=230.9
Q ss_pred HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHhhCCCCc-ccccccc-----------------------------
Q 036910 59 ALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGL-SYRLGLN----------------------------- 108 (314)
Q Consensus 59 ~~~f~~f~~~~~k~y~~~~e~~~R~~~f~~n~~~i~~~n~~~~-~y~l~~n----------------------------- 108 (314)
+.+|..|+.+|+|+|.+.+|...|+.||+.|+..+++++.... +..+|+|
T Consensus 68 ~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~~~~~ 147 (372)
T KOG1542|consen 68 EDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLPGDAA 147 (372)
T ss_pred HHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccccCccccc
Confidence 5899999999999999999999999999999999988776544 5555555
Q ss_pred ---------------------cCccccCCCCchhHHHhhHHHHHHHHHHHcCCCcccCHHHHHhhhcCCCCCCCCCCChh
Q 036910 109 ---------------------ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPS 167 (314)
Q Consensus 109 ---------------------vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g~~~~lS~q~l~dc~~~~~~~gC~GG~~~ 167 (314)
||||||||+||||||||+|+++|+++++++|++++||||+|+||+. .+.||+||.+.
T Consensus 148 ~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~--~d~gC~GGl~~ 225 (372)
T KOG1542|consen 148 EAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS--CDNGCNGGLMD 225 (372)
T ss_pred cCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC--cCCcCCCCChh
Confidence 9999999999999999999999999999999999999999999995 68999999999
Q ss_pred hHHHHHHHcCCcCCCCCCCCCCCCC-cccCCCCCcceEeceeEEecCCCHHHHHHHHHccCCeEEEEEecccccccCCce
Q 036910 168 QAFEYIKYNGGLDTEEAYPYTGKDG-VCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGV 246 (314)
Q Consensus 168 ~a~~~~~~~~Gi~~e~~yPY~~~~~-~c~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi 246 (314)
.||+|+++.+|+..|++|||+++.+ .|.++.....+.|.++..++. +|++|.++|.++|||+|+|++ ..+|+|++||
T Consensus 226 nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~~~~~v~I~~f~~l~~-nE~~ia~wLv~~GPi~vgiNa-~~mQ~YrgGV 303 (372)
T KOG1542|consen 226 NAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDKSKIVVSIKDFSMLSN-NEDQIAAWLVTFGPLSVGINA-KPMQFYRGGV 303 (372)
T ss_pred HHHHHHHHhCCccccccCCccccCCCccccchhhceEEEeccEecCC-CHHHHHHHHHhcCCeEEEEch-HHHHHhcccc
Confidence 9999988889999999999999988 999999999999999999884 899999999999999999997 4699999999
Q ss_pred Eec--CCCCCCCCCCCeEEEEEEeeecC-CcceEEEEcCCCCCcCCCcEEEEEeCCCccccCCceeeeee
Q 036910 247 YSS--TKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVV 313 (314)
Q Consensus 247 ~~~--~~~~~~~~~~~Hav~iVGyg~~~-g~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~p~~ 313 (314)
..+ ..|+.. .++|+|||||||..+ .++|||||||||++|||+||+|+.||.|.|||+++++.+++
T Consensus 304 ~~P~~~~Cs~~--~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~v 371 (372)
T KOG1542|consen 304 SCPSKYICSPK--LLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAAV 371 (372)
T ss_pred cCCCcccCCcc--ccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccccccccchhhhhc
Confidence 988 568653 489999999999988 89999999999999999999999999999999999987764
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=6.4e-71 Score=513.24 Aligned_cols=245 Identities=40% Similarity=0.774 Sum_probs=213.4
Q ss_pred HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHhhCCCCcccccccc-------------------------------
Q 036910 60 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLN------------------------------- 108 (314)
Q Consensus 60 ~~f~~f~~~~~k~y~~~~e~~~R~~~f~~n~~~i~~~n~~~~~y~l~~n------------------------------- 108 (314)
.+|++|+++|+|.|.+.+|+.+|+.+|.+|+++|++||++..+|++++|
T Consensus 36 ~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~~~~~~~ 115 (348)
T PTZ00203 36 ALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQHAGQH 115 (348)
T ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHHHHHhcCCCccccccccccccc
Confidence 5799999999999999888999999999999999999965444544444
Q ss_pred ----------------------cCccccCCCCchhHHHhhHHHHHHHHHHHcCCCcccCHHHHHhhhcCCCCCCCCCCCh
Q 036910 109 ----------------------ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLP 166 (314)
Q Consensus 109 ----------------------vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g~~~~lS~q~l~dc~~~~~~~gC~GG~~ 166 (314)
|+||||||.||||||||+++++|+++++++++.++||+|||+||+. .+.||+||++
T Consensus 116 ~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~--~~~GC~GG~~ 193 (348)
T PTZ00203 116 YRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH--VDNGCGGGLM 193 (348)
T ss_pred ccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC--CCCCCCCCCH
Confidence 8999999999999999999999999999999999999999999985 3779999999
Q ss_pred hhHHHHHHHc--CCcCCCCCCCCCCCCC---cccCCCC-CcceEeceeEEecCCCHHHHHHHHHccCCeEEEEEeccccc
Q 036910 167 SQAFEYIKYN--GGLDTEEAYPYTGKDG---VCKFSSE-NVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFR 240 (314)
Q Consensus 167 ~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~c~~~~~-~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~ 240 (314)
..||+|+.++ +|+++|++|||.+.++ .|..... ....++..+..++. +++.|+.+|..+|||+|+|++. +|+
T Consensus 194 ~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a~-~f~ 271 (348)
T PTZ00203 194 LQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVDAS-SFM 271 (348)
T ss_pred HHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEEhh-hhc
Confidence 9999999864 6799999999998766 6864332 23456677776654 7889999999899999999995 899
Q ss_pred ccCCceEecCCCCCCCCCCCeEEEEEEeeecCCcceEEEEcCCCCCcCCCcEEEEEeCCCccccCCceeeee
Q 036910 241 FYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 312 (314)
Q Consensus 241 ~y~~Gi~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~p~ 312 (314)
+|++|||.. |... .++|||+|||||+++|++|||||||||++||++|||||.||.|.|||++++....
T Consensus 272 ~Y~~GIy~~--c~~~--~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~~ 339 (348)
T PTZ00203 272 SYHSGVLTS--CIGE--QLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSVH 339 (348)
T ss_pred CccCceeec--cCCC--CCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEEe
Confidence 999999973 7543 4699999999999889999999999999999999999999999999997766543
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=1.5e-67 Score=504.45 Aligned_cols=247 Identities=41% Similarity=0.819 Sum_probs=216.3
Q ss_pred hHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHhhCCCC-cccccccc----------------------------
Q 036910 58 HALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKG-LSYRLGLN---------------------------- 108 (314)
Q Consensus 58 ~~~~f~~f~~~~~k~y~~~~e~~~R~~~f~~n~~~i~~~n~~~-~~y~l~~n---------------------------- 108 (314)
....|++|+.+|+|.|.+.+|+.+|+.+|.+|+++|++||... .+|++++|
T Consensus 165 ~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~~~ 244 (489)
T PTZ00021 165 NVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNGKK 244 (489)
T ss_pred HHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhcccccccccccccc
Confidence 4478999999999999999999999999999999999999531 12211111
Q ss_pred ---------------------------------cCccccCCCCchhHHHhhHHHHHHHHHHHcCCCcccCHHHHHhhhcC
Q 036910 109 ---------------------------------ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQA 155 (314)
Q Consensus 109 ---------------------------------vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g~~~~lS~q~l~dc~~~ 155 (314)
||||||||.||||||||+++++|+++++++++.++||||+|+||+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~- 323 (489)
T PTZ00021 245 SPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSF- 323 (489)
T ss_pred ccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhcc-
Confidence 7899999999999999999999999999999999999999999985
Q ss_pred CCCCCCCCCChhhHHHHHHHcCCcCCCCCCCCCCC-CCcccCCCCCcceEeceeEEecCCCHHHHHHHHHccCCeEEEEE
Q 036910 156 FNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGK-DGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFE 234 (314)
Q Consensus 156 ~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~c~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~ 234 (314)
.+.||+||++..|++|+.+++|+++|++|||.+. ++.|........+++.++..++ +++++++|...|||+|+|+
T Consensus 324 -~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~~~~~~~i~~y~~i~---~~~lk~al~~~GPVsv~i~ 399 (489)
T PTZ00021 324 -KNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDRCKEKYKIKSYVSIP---EDKFKEAIRFLGPISVSIA 399 (489)
T ss_pred -CCCCCCCcchHhhhhhhhhccccCcccccCccCCCCCccccccccccceeeeEEEec---HHHHHHHHHhcCCeEEEEE
Confidence 4789999999999999988889999999999987 4789876555567777777775 5789999998999999999
Q ss_pred ecccccccCCceEecCCCCCCCCCCCeEEEEEEeeecCC----------cceEEEEcCCCCCcCCCcEEEEEeCC----C
Q 036910 235 VVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDG----------VPYWLIKNSWGENWGDHGYFKMEMGK----N 300 (314)
Q Consensus 235 ~~~~f~~y~~Gi~~~~~~~~~~~~~~Hav~iVGyg~~~g----------~~ywivkNSWG~~WG~~Gy~~i~~~~----~ 300 (314)
+..+|++|++|||.. .|+. .++|||+|||||++++ .+|||||||||++|||+|||||+|+. |
T Consensus 400 a~~~f~~YkgGIy~~-~C~~---~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n 475 (489)
T PTZ00021 400 VSDDFAFYKGGIFDG-ECGE---EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMK 475 (489)
T ss_pred eecccccCCCCcCCC-CCCC---ccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCC
Confidence 977899999999976 6864 3799999999997532 47999999999999999999999986 5
Q ss_pred ccccCCceeeeee
Q 036910 301 MCGIATCASYPVV 313 (314)
Q Consensus 301 ~cgi~~~~~~p~~ 313 (314)
+|||++.++||++
T Consensus 476 ~CGI~t~a~yP~~ 488 (489)
T PTZ00021 476 TCSLGTEAYVPLI 488 (489)
T ss_pred CCCCcccceeEec
Confidence 8999999999986
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=5.2e-66 Score=492.27 Aligned_cols=244 Identities=39% Similarity=0.763 Sum_probs=207.4
Q ss_pred HHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHhhCCC-----------------------C--cc-----------
Q 036910 59 ALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCK-----------------------G--LS----------- 102 (314)
Q Consensus 59 ~~~f~~f~~~~~k~y~~~~e~~~R~~~f~~n~~~i~~~n~~-----------------------~--~~----------- 102 (314)
..+|++|+++|+|.|.+.+|+..|+.+|.+|++.|++||.. + .+
T Consensus 123 ~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~~~~~~ 202 (448)
T PTZ00200 123 YLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGDEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNSTSHNND 202 (448)
T ss_pred HHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCcCCeEEeccccccCCHHHHHHHhccCCCcccccccccccc
Confidence 45899999999999999999999999999999999999841 0 00
Q ss_pred ----------ccc----------cc-----------c------cCccccCC-CCchhHHHhhHHHHHHHHHHHcCCCccc
Q 036910 103 ----------YRL----------GL-----------N------ISPVKDQG-HCGSCWTFSTTGSLEAAYHQAFGKGISL 144 (314)
Q Consensus 103 ----------y~l----------~~-----------n------vtpVkdQg-~cGsCwAfa~~~~lE~~~~~~~g~~~~l 144 (314)
|.. .+ + |+|||||| .||||||||+++++|+++++++++.+.|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~L 282 (448)
T PTZ00200 203 FKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDL 282 (448)
T ss_pred cccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhcCCCeec
Confidence 000 01 0 89999999 9999999999999999999999999999
Q ss_pred CHHHHHhhhcCCCCCCCCCCChhhHHHHHHHcCCcCCCCCCCCCCCCCcccCCCCCcceEeceeEEecCCCHHHHHHHHH
Q 036910 145 SEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVG 224 (314)
Q Consensus 145 S~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~ 224 (314)
|+|||+||+. .+.||+||++..|++|++++ |+++|++|||.+.++.|...... ...+..+..++ ..+.+++++
T Consensus 283 SeQqLvDC~~--~~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~~~-~~~i~~y~~~~--~~~~l~~~l- 355 (448)
T PTZ00200 283 SEQELVNCDT--KSQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSSTK-KVYIDSYLVAK--GKDVLNKSL- 355 (448)
T ss_pred CHHHHhhccC--ccCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCCCCC-eeEecceEecC--HHHHHHHHH-
Confidence 9999999985 47899999999999999876 99999999999999999865433 34565555432 345566666
Q ss_pred ccCCeEEEEEecccccccCCceEecCCCCCCCCCCCeEEEEEEeee--cCCcceEEEEcCCCCCcCCCcEEEEEeC---C
Q 036910 225 LVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGV--EDGVPYWLIKNSWGENWGDHGYFKMEMG---K 299 (314)
Q Consensus 225 ~~gPV~v~~~~~~~f~~y~~Gi~~~~~~~~~~~~~~Hav~iVGyg~--~~g~~ywivkNSWG~~WG~~Gy~~i~~~---~ 299 (314)
..|||+|+|++.++|+.|++|||.+ +|+. .++|||+|||||. ++|.+|||||||||++||++|||||+|+ .
T Consensus 356 ~~GPV~v~i~~~~~f~~Yk~GIy~~-~C~~---~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~ 431 (448)
T PTZ00200 356 VISPTVVYIAVSRELLKYKSGVYNG-ECGK---SLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGT 431 (448)
T ss_pred hcCCEEEEeecccccccCCCCcccc-ccCC---CCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCCC
Confidence 4799999999988999999999976 5865 3799999999984 4688999999999999999999999996 5
Q ss_pred CccccCCceeeeee
Q 036910 300 NMCGIATCASYPVV 313 (314)
Q Consensus 300 ~~cgi~~~~~~p~~ 313 (314)
|.|||++.+.||++
T Consensus 432 n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 432 DKCGILTVGLTPVF 445 (448)
T ss_pred CcCCccccceeeEE
Confidence 89999999999986
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-64 Score=464.69 Aligned_cols=244 Identities=49% Similarity=0.891 Sum_probs=217.4
Q ss_pred HHHhCCccCCHHHHHHHHHHHHHHHHHHHhhCCC-Ccccccccc------------------------------------
Q 036910 66 ARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCK-GLSYRLGLN------------------------------------ 108 (314)
Q Consensus 66 ~~~~~k~y~~~~e~~~R~~~f~~n~~~i~~~n~~-~~~y~l~~n------------------------------------ 108 (314)
..+|.+.|.+..|...|+.+|.+|++.++.||.. ..+|.+++|
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIKRDKFTEKLDGDDL 109 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccccccccccccchhhC
Confidence 5566777777788999999999999999999875 455555544
Q ss_pred ------------cCccccCCCCchhHHHhhHHHHHHHHHHHcC-CCcccCHHHHHhhhcCCCCCCCCCCChhhHHHHHHH
Q 036910 109 ------------ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFG-KGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKY 175 (314)
Q Consensus 109 ------------vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g-~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~ 175 (314)
++||||||.||||||||++++||+++++++| .+++||+|+|+||+.. ++.||+||.+..|++|+.+
T Consensus 110 p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A~~yi~~ 188 (325)
T KOG1543|consen 110 PDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNAFKYIKK 188 (325)
T ss_pred CCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHHHHHHHH
Confidence 6669999999999999999999999999999 8999999999999976 6789999999999999999
Q ss_pred cCCcCCCCCCCCCCCCCcccCCCCCcceEeceeEEecCCCHHHHHHHHHccCCeEEEEEecccccccCCceEecCCCCCC
Q 036910 176 NGGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNT 255 (314)
Q Consensus 176 ~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~~~~~ 255 (314)
+|++.++++|||.+..+.|+.+.....+.+.+++.++.. +++|+.+|+.+|||+|+|++.++|+.|++|||.++.|...
T Consensus 189 ~G~~t~~~~Ypy~~~~~~C~~~~~~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~~~~~~~~ 267 (325)
T KOG1543|consen 189 NGGVTECENYPYIGKDGTCKSNKKDKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYEDFSLYKGGVYAEEKGDDK 267 (325)
T ss_pred hCCCCCCcCCCCcCCCCCccCCCccceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehhhhhhccCceEeCCCCCCC
Confidence 965555999999999999999887666777777777754 9999999999999999999988999999999999877653
Q ss_pred CCCCCeEEEEEEeeecCCcceEEEEcCCCCCcCCCcEEEEEeCCCccccCCceee-eee
Q 036910 256 PMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASY-PVV 313 (314)
Q Consensus 256 ~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~-p~~ 313 (314)
.++|||+|||||..++.+|||||||||+.|||+|||||.|+.+.|+|++.++| |+.
T Consensus 268 --~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 268 --EGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPIK 324 (325)
T ss_pred --CCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCCC
Confidence 58999999999996678999999999999999999999999999999999999 753
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=5.1e-57 Score=403.95 Aligned_cols=200 Identities=41% Similarity=0.757 Sum_probs=171.9
Q ss_pred cCccccCCCCchhHHHhhHHHHHHHHHHHcCC------CcccCHHHHHhhhcCCCCCCCCCCChhhHHHHHHHcCCcCCC
Q 036910 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGK------GISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTE 182 (314)
Q Consensus 109 vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g~------~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e 182 (314)
|+||||||.||||||||++++||+++.+++++ .+.||+|||+||+. .+.||+||++..|++|+.++ |+++|
T Consensus 17 v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~--~~~GC~GG~~~~a~~~~~~~-Gi~~e 93 (243)
T cd02621 17 VSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ--YSQGCDGGFPFLVGKFAEDF-GIVTE 93 (243)
T ss_pred cccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC--CCCCCCCCCHHHHHHHHHhc-CcCCC
Confidence 89999999999999999999999999998776 78999999999985 36799999999999999876 89999
Q ss_pred CCCCCCC-CCCcccCCC-CCcceEeceeEEe----cCCCHHHHHHHHHccCCeEEEEEecccccccCCceEecCC----C
Q 036910 183 EAYPYTG-KDGVCKFSS-ENVGVQVLDSVNI----TLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTK----C 252 (314)
Q Consensus 183 ~~yPY~~-~~~~c~~~~-~~~~~~~~~~~~~----~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~----~ 252 (314)
++|||.+ ..+.|.... .....++.++..+ ...++++||++|.++|||+++|++.++|++|++|||.... |
T Consensus 94 ~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~~~~~C 173 (243)
T cd02621 94 DYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVS 173 (243)
T ss_pred ceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEecccccccCCeEECcCCccccc
Confidence 9999998 778898654 3333333333332 2347899999999999999999998899999999998764 6
Q ss_pred CCCC------CCCCeEEEEEEeeecC--CcceEEEEcCCCCCcCCCcEEEEEeCCCccccCCceeee
Q 036910 253 GNTP------MDVNHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYP 311 (314)
Q Consensus 253 ~~~~------~~~~Hav~iVGyg~~~--g~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~p 311 (314)
.... ..++|||+|||||+++ +.+|||||||||++||++|||||+|+.|.|||++.+.++
T Consensus 174 ~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~~ 240 (243)
T cd02621 174 DGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFA 240 (243)
T ss_pred ccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccceEee
Confidence 5321 2479999999999876 899999999999999999999999999999999998654
No 7
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=1.3e-56 Score=392.58 Aligned_cols=199 Identities=55% Similarity=1.089 Sum_probs=182.6
Q ss_pred cCccccCCCCchhHHHhhHHHHHHHHHHHcCCCcccCHHHHHhhhcCCCCCCCCCCChhhHHHHHHHcCCcCCCCCCCCC
Q 036910 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYT 188 (314)
Q Consensus 109 vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~ 188 (314)
++||+|||.||+|||||++++||+++++++++.+.||+|+|++|... .+.+|+||++..|++++.+. |+++|++|||.
T Consensus 12 ~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~ 89 (210)
T cd02248 12 VTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYVKNG-GLASESDYPYT 89 (210)
T ss_pred CCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHHHHC-CcCccccCCcc
Confidence 89999999999999999999999999999999999999999999863 47899999999999988766 99999999999
Q ss_pred CCCCcccCCCCCcceEeceeEEecCCCHHHHHHHHHccCCeEEEEEecccccccCCceEecCCCCCCCCCCCeEEEEEEe
Q 036910 189 GKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGY 268 (314)
Q Consensus 189 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~~~~~~~~~~Hav~iVGy 268 (314)
.....|+........++.++..+...++++||++|+++|||++++.+.++|+.|++|||..+.|. ...++|||+||||
T Consensus 90 ~~~~~C~~~~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~~~~--~~~~~Hav~iVGy 167 (210)
T cd02248 90 GKDGTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCS--NTNLNHAVLLVGY 167 (210)
T ss_pred CCCCCccCCCCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeCCCCC--CCcCCEEEEEEEE
Confidence 98889988776677888888888776789999999999999999999889999999999987663 2357999999999
Q ss_pred eecCCcceEEEEcCCCCCcCCCcEEEEEeCCCccccCCceeee
Q 036910 269 GVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYP 311 (314)
Q Consensus 269 g~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~p 311 (314)
|++.+.+|||||||||++||++|||||+++.|.|||++.+.||
T Consensus 168 ~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~ 210 (210)
T cd02248 168 GTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210 (210)
T ss_pred eecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence 9998999999999999999999999999999999999888876
No 8
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=2.2e-56 Score=397.94 Aligned_cols=195 Identities=37% Similarity=0.761 Sum_probs=166.2
Q ss_pred cCccccCCCCchhHHHhhHHHHHHHHHHHcC--CCcccCHHHHHhhhcCCCCCCCCCCChhhHHHHHHHcCCcCCCCCCC
Q 036910 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFG--KGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYP 186 (314)
Q Consensus 109 vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g--~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yP 186 (314)
|+||||||.||||||||++++||+++.++++ +.+.||+|+|+||+.. .+.||+||++..|++|++++ |+++|++||
T Consensus 16 v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~-~~~gC~GG~~~~a~~~i~~~-G~~~e~~yP 93 (236)
T cd02620 16 IGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG-CGDGCNGGYPDAAWKYLTTT-GVVTGGCQP 93 (236)
T ss_pred ccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC-CCCCCCCCCHHHHHHHHHhc-CCCcCCEec
Confidence 6799999999999999999999999999887 7899999999999863 47899999999999999987 899999999
Q ss_pred CCCCCCc------------------ccCCCC----CcceEeceeEEecCCCHHHHHHHHHccCCeEEEEEecccccccCC
Q 036910 187 YTGKDGV------------------CKFSSE----NVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKS 244 (314)
Q Consensus 187 Y~~~~~~------------------c~~~~~----~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~ 244 (314)
|.+.+.. |..... ....++..+..+. .++++||.+|.++|||+++|.+.++|+.|++
T Consensus 94 Y~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~v~i~~~~~f~~Y~~ 172 (236)
T cd02620 94 YTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQAAFTVYEDFLYYKS 172 (236)
T ss_pred CcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeEEEEEechhhhhcCC
Confidence 9876543 332211 1123334444443 3688999999999999999999889999999
Q ss_pred ceEecCCCCCCCCCCCeEEEEEEeeecCCcceEEEEcCCCCCcCCCcEEEEEeCCCccccCCcee
Q 036910 245 GVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 309 (314)
Q Consensus 245 Gi~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~ 309 (314)
|||... |.. ..++|||+|||||++++++|||||||||++|||+|||||+|+.|+|||++.+.
T Consensus 173 Giy~~~-~~~--~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~ 234 (236)
T cd02620 173 GVYQHT-SGK--QLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVV 234 (236)
T ss_pred cEEeec-CCC--CcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccCccccccccee
Confidence 999764 433 24799999999999999999999999999999999999999999999998765
No 9
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=1.1e-55 Score=394.14 Aligned_cols=195 Identities=30% Similarity=0.640 Sum_probs=169.2
Q ss_pred cCccccCC---CCchhHHHhhHHHHHHHHHHHcC---CCcccCHHHHHhhhcCCCCCCCCCCChhhHHHHHHHcCCcCCC
Q 036910 109 ISPVKDQG---HCGSCWTFSTTGSLEAAYHQAFG---KGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTE 182 (314)
Q Consensus 109 vtpVkdQg---~cGsCwAfa~~~~lE~~~~~~~g---~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e 182 (314)
|+|||||| .||||||||++++||+++.++++ +.+.||+|||+||+. +.||+||++..|++|+.++ |+++|
T Consensus 16 v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~~~a~~~~~~~-Gl~~e 91 (239)
T cd02698 16 VSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDPGGVYEYAHKH-GIPDE 91 (239)
T ss_pred cCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCHHHHHHHHHHc-CcCCC
Confidence 89999998 89999999999999999998765 367999999999985 6799999999999999886 89999
Q ss_pred CCCCCCCCCCcccCCC---------------CCcceEeceeEEecCCCHHHHHHHHHccCCeEEEEEecccccccCCceE
Q 036910 183 EAYPYTGKDGVCKFSS---------------ENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVY 247 (314)
Q Consensus 183 ~~yPY~~~~~~c~~~~---------------~~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~ 247 (314)
++|||.+.++.|.... ....+++.++..++ ++++||++|.++|||+++|++.++|+.|++|||
T Consensus 92 ~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy 169 (239)
T cd02698 92 TCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGIMATEALENYTGGVY 169 (239)
T ss_pred CeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEEEecccccccCCeEE
Confidence 9999998777775311 11123444444443 578999999999999999999889999999999
Q ss_pred ecCCCCCCCCCCCeEEEEEEeeecC-CcceEEEEcCCCCCcCCCcEEEEEeCC-----CccccCCceeeee
Q 036910 248 SSTKCGNTPMDVNHAVVAVGYGVED-GVPYWLIKNSWGENWGDHGYFKMEMGK-----NMCGIATCASYPV 312 (314)
Q Consensus 248 ~~~~~~~~~~~~~Hav~iVGyg~~~-g~~ywivkNSWG~~WG~~Gy~~i~~~~-----~~cgi~~~~~~p~ 312 (314)
....|.. .++|||+|||||+++ +++|||||||||++||++|||||+|+. |+|||++.+.|+.
T Consensus 170 ~~~~~~~---~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~~~ 237 (239)
T cd02698 170 KEYVQDP---LINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWAD 237 (239)
T ss_pred ccCCCCC---cCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceEEEe
Confidence 8766643 579999999999876 899999999999999999999999999 9999999999875
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=3.6e-54 Score=378.35 Aligned_cols=201 Identities=43% Similarity=0.871 Sum_probs=175.7
Q ss_pred cCccccCCCCchhHHHhhHHHHHHHHHHHc-CCCcccCHHHHHhhhcCCCCCCCCCCChhhHHHHHHHcCCcCCCCCCCC
Q 036910 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAF-GKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPY 187 (314)
Q Consensus 109 vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~-g~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY 187 (314)
++||+|||.||+|||||+++++|++++++. +..+.||+|+|++|.. ..+.+|+||++..|+++++++.|+++|++|||
T Consensus 14 ~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~~~~~~~Gi~~e~~~pY 92 (219)
T PF00112_consen 14 ITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALKYIKNNNGIVTEEDYPY 92 (219)
T ss_dssp SG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHHHHHHHTSBEBTTTS--
T ss_pred cCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccceeecccCcccccccccc
Confidence 899999999999999999999999999998 7899999999999987 34679999999999999998459999999999
Q ss_pred CCCC-CcccCCCCCc-ceEeceeEEecCCCHHHHHHHHHccCCeEEEEEecc-cccccCCceEecCCCCCCCCCCCeEEE
Q 036910 188 TGKD-GVCKFSSENV-GVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVV 264 (314)
Q Consensus 188 ~~~~-~~c~~~~~~~-~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~-~f~~y~~Gi~~~~~~~~~~~~~~Hav~ 264 (314)
.... ..|....... ..++..+..+...++++||++|.++|||++++.+.+ +|+.|++|||..++|.. ..++|||+
T Consensus 93 ~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~~~--~~~~Hav~ 170 (219)
T PF00112_consen 93 NGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDCSN--ESGGHAVL 170 (219)
T ss_dssp SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSSSS--SSEEEEEE
T ss_pred cccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecccccc--cccccccc
Confidence 9877 6898765443 367888888887779999999999999999999977 69999999999877764 35899999
Q ss_pred EEEeeecCCcceEEEEcCCCCCcCCCcEEEEEeCCC-ccccCCceeeee
Q 036910 265 AVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKN-MCGIATCASYPV 312 (314)
Q Consensus 265 iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~-~cgi~~~~~~p~ 312 (314)
|||||++.+++|||||||||++||++||+||+|+.+ +|||++.++||+
T Consensus 171 iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 171 IVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp EEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred ccccccccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 999999999999999999999999999999999987 999999999996
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=7.5e-53 Score=411.57 Aligned_cols=201 Identities=33% Similarity=0.596 Sum_probs=167.1
Q ss_pred cCccccCCCCchhHHHhhHHHHHHHHHHHcCC-----C-----cccCHHHHHhhhcCCCCCCCCCCChhhHHHHHHHcCC
Q 036910 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGK-----G-----ISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGG 178 (314)
Q Consensus 109 vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g~-----~-----~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~G 178 (314)
++||+|||.||||||||++++||+++++++++ . ..||+|+|+||+. .+.||+||++..|++|+.+. |
T Consensus 397 vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~--~nqGC~GG~~~~A~kya~~~-G 473 (693)
T PTZ00049 397 EYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF--YDQGCNGGFPYLVSKMAKLQ-G 473 (693)
T ss_pred ccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC--CCCCcCCCcHHHHHHHHHHC-C
Confidence 79999999999999999999999999998642 1 2799999999985 47899999999999999876 9
Q ss_pred cCCCCCCCCCCCCCcccCCCCCc---------------------------------------ceEeceeEEec-------
Q 036910 179 LDTEEAYPYTGKDGVCKFSSENV---------------------------------------GVQVLDSVNIT------- 212 (314)
Q Consensus 179 i~~e~~yPY~~~~~~c~~~~~~~---------------------------------------~~~~~~~~~~~------- 212 (314)
+++|++|||.+..+.|+...... ...+.++..+.
T Consensus 474 I~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k~y~yI~g~y~~~~ 553 (693)
T PTZ00049 474 IPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAKDYNYIGGCYGCNQ 553 (693)
T ss_pred CCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccceeeeeeEEecccccccC
Confidence 99999999999888886532111 11122333332
Q ss_pred CCCHHHHHHHHHccCCeEEEEEecccccccCCceEecC------CCCCC------------CCCCCeEEEEEEeeec--C
Q 036910 213 LGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSST------KCGNT------------PMDVNHAVVAVGYGVE--D 272 (314)
Q Consensus 213 ~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~------~~~~~------------~~~~~Hav~iVGyg~~--~ 272 (314)
..++++|+++|+.+|||+|+|++.++|++|++|||..+ .|... ....+|||+|||||.+ +
T Consensus 554 ~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~en 633 (693)
T PTZ00049 554 CNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEIN 633 (693)
T ss_pred CCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEeccccCC
Confidence 23688999999999999999999878999999999864 37432 1246999999999975 4
Q ss_pred Cc--ceEEEEcCCCCCcCCCcEEEEEeCCCccccCCceeeee
Q 036910 273 GV--PYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 312 (314)
Q Consensus 273 g~--~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~p~ 312 (314)
|. +|||||||||++||++|||||.||.|.|||++.+.|+.
T Consensus 634 G~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~ 675 (693)
T PTZ00049 634 GKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIE 675 (693)
T ss_pred CcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEe
Confidence 53 79999999999999999999999999999999998875
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=2.3e-52 Score=404.22 Aligned_cols=197 Identities=25% Similarity=0.476 Sum_probs=165.6
Q ss_pred cCccccCCC---CchhHHHhhHHHHHHHHHHHc------CCCcccCHHHHHhhhcCCCCCCCCCCChhhHHHHHHHcCCc
Q 036910 109 ISPVKDQGH---CGSCWTFSTTGSLEAAYHQAF------GKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGL 179 (314)
Q Consensus 109 vtpVkdQg~---cGsCwAfa~~~~lE~~~~~~~------g~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi 179 (314)
|+||||||. ||||||||++++||+++++++ ++.+.||+|+|+||+. .+.||+||++..|++|+.++ |+
T Consensus 220 VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~--~n~GCdGG~p~~A~~yi~~~-GI 296 (548)
T PTZ00364 220 LPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ--YGQGCAGGFPEEVGKFAETF-GI 296 (548)
T ss_pred CCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC--CCCCCCCCcHHHHHHHHHhC-Cc
Confidence 899999999 999999999999999999987 3478999999999985 37899999999999999876 99
Q ss_pred CCCCCC--CCCCCCC---cccCCCCCcceEecee------EEecCCCHHHHHHHHHccCCeEEEEEecccccccCCceEe
Q 036910 180 DTEEAY--PYTGKDG---VCKFSSENVGVQVLDS------VNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYS 248 (314)
Q Consensus 180 ~~e~~y--PY~~~~~---~c~~~~~~~~~~~~~~------~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~ 248 (314)
++|++| ||.+.++ .|+.......+++.++ +... .++++|+.+|+.+|||+|+|++..+|+.|++|||.
T Consensus 297 ~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVsVaIda~~df~~YksGiy~ 375 (548)
T PTZ00364 297 LTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTE 375 (548)
T ss_pred ccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeEEEEEechHHHhcCCCCcc
Confidence 999999 9987665 5876544443444333 2222 46889999999999999999998889999999986
Q ss_pred cC--------CCCCC--------CCCCCeEEEEEEeee-cCCcceEEEEcCCCC--CcCCCcEEEEEeCCCccccCCcee
Q 036910 249 ST--------KCGNT--------PMDVNHAVVAVGYGV-EDGVPYWLIKNSWGE--NWGDHGYFKMEMGKNMCGIATCAS 309 (314)
Q Consensus 249 ~~--------~~~~~--------~~~~~Hav~iVGyg~-~~g~~ywivkNSWG~--~WG~~Gy~~i~~~~~~cgi~~~~~ 309 (314)
.. .|... ...++|||+|||||. ++|.+|||||||||+ +|||+|||||.||.|+|||++.+.
T Consensus 376 gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~N~CGIes~~v 455 (548)
T PTZ00364 376 DVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVV 455 (548)
T ss_pred CeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCCCcccccceee
Confidence 31 12110 124799999999997 478899999999999 999999999999999999999986
No 13
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=3.8e-48 Score=388.24 Aligned_cols=202 Identities=24% Similarity=0.442 Sum_probs=165.7
Q ss_pred cCccccCCCCchhHHHhhHHHHHHHHHHHcCCCcccCHHHHHhhhcCCCCCCCCCCChh-hHHHHHHHcCCcCCCCCCCC
Q 036910 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPS-QAFEYIKYNGGLDTEEAYPY 187 (314)
Q Consensus 109 vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g~~~~lS~q~l~dc~~~~~~~gC~GG~~~-~a~~~~~~~~Gi~~e~~yPY 187 (314)
..||||||.||+|||||+++++|+++++++++.+.||+|+|+||+...++.||.||+.. .++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 57999999999999999999999999999999999999999999875567899999754 56689988878999999999
Q ss_pred CC--CCCcccCCCCC------------------cceEeceeEEecCC----C----HHHHHHHHHccCCeEEEEEecccc
Q 036910 188 TG--KDGVCKFSSEN------------------VGVQVLDSVNITLG----A----EDELQHAVGLVRPVSVAFEVVDGF 239 (314)
Q Consensus 188 ~~--~~~~c~~~~~~------------------~~~~~~~~~~~~~~----~----~~~ik~~l~~~gPV~v~~~~~~~f 239 (314)
.+ ..+.|+..... ..+.+.++..+... + ++.|+++|+.+|||+|+|++. +|
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs-df 702 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE-NV 702 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee-hH
Confidence 75 56678743211 01222333333321 1 468999999999999999985 68
Q ss_pred cccC-CceEecCCCCCCCCCCCeEEEEEEeeec-----CCcceEEEEcCCCCCcCCCcEEEEEe-CCCccccCCceeeee
Q 036910 240 RFYK-SGVYSSTKCGNTPMDVNHAVVAVGYGVE-----DGVPYWLIKNSWGENWGDHGYFKMEM-GKNMCGIATCASYPV 312 (314)
Q Consensus 240 ~~y~-~Gi~~~~~~~~~~~~~~Hav~iVGyg~~-----~g~~ywivkNSWG~~WG~~Gy~~i~~-~~~~cgi~~~~~~p~ 312 (314)
+.|. +|||....|+.. .++|||+|||||.+ ++++|||||||||+.||++|||||.| |.++|||....++|+
T Consensus 703 ~~Y~~sGIyv~~~Cgs~--~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~ 780 (1004)
T PTZ00462 703 LGYEFNGKKVQNLCGDD--TADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVI 780 (1004)
T ss_pred HhhhcCCccccCCCCCC--cCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeee
Confidence 8884 899887778753 47999999999964 25789999999999999999999998 789999999888888
Q ss_pred e
Q 036910 313 V 313 (314)
Q Consensus 313 ~ 313 (314)
+
T Consensus 781 f 781 (1004)
T PTZ00462 781 F 781 (1004)
T ss_pred E
Confidence 6
No 14
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=3.4e-48 Score=329.75 Aligned_cols=156 Identities=60% Similarity=1.221 Sum_probs=139.9
Q ss_pred cCccccCCCCchhHHHhhHHHHHHHHHHHcCCCcccCHHHHHhhhcCCCCCCCCCCChhhHHHHHHHcCCcCCCCCCCCC
Q 036910 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYT 188 (314)
Q Consensus 109 vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~ 188 (314)
++||||||.||+|||||+++++|+++++++++.++||+|+|++|... .+.||+||.+..|++|+.+++|+++|++|||+
T Consensus 13 ~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~~~~~~Gi~~e~~~PY~ 91 (174)
T smart00645 13 VTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEYIKKNGGLETESCYPYT 91 (174)
T ss_pred CCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHHHHHcCCcccccccCcc
Confidence 89999999999999999999999999999998999999999999864 46699999999999999887689999999997
Q ss_pred CCCCcccCCCCCcceEeceeEEecCCCHHHHHHHHHccCCeEEEEEecccccccCCceEecCCCCCCCCCCCeEEEEEEe
Q 036910 189 GKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGY 268 (314)
Q Consensus 189 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~~~~~~~~~~Hav~iVGy 268 (314)
. ++.+.+. +|+.|++|||..++|... ..+|+|+||||
T Consensus 92 ~----------------------------------------~~~~~~~-~f~~Y~~Gi~~~~~~~~~--~~~Hav~ivGy 128 (174)
T smart00645 92 G----------------------------------------SVAIDAS-DFQFYKSGIYDHPGCGSG--TLDHAVLIVGY 128 (174)
T ss_pred c----------------------------------------EEEEEcc-cccCCcCeEECCCCCCCC--cccEEEEEEEE
Confidence 5 4555554 599999999988777542 36999999999
Q ss_pred eec-CCcceEEEEcCCCCCcCCCcEEEEEeCC-CccccCCce
Q 036910 269 GVE-DGVPYWLIKNSWGENWGDHGYFKMEMGK-NMCGIATCA 308 (314)
Q Consensus 269 g~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~cgi~~~~ 308 (314)
|.+ +|++|||||||||+.||++|||||+|+. |.|||+...
T Consensus 129 g~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~ 170 (174)
T smart00645 129 GTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV 170 (174)
T ss_pred eecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeee
Confidence 987 8899999999999999999999999998 999997544
No 15
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=5.1e-47 Score=333.63 Aligned_cols=190 Identities=33% Similarity=0.551 Sum_probs=161.4
Q ss_pred cCccccCCCCchhHHHhhHHHHHHHHHHHcC--CCcccCHHHHHhhhcCCC---CCCCCCCChhhHHH-HHHHcCCcCCC
Q 036910 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFG--KGISLSEQQLVDCAQAFN---NQGCNGGLPSQAFE-YIKYNGGLDTE 182 (314)
Q Consensus 109 vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g--~~~~lS~q~l~dc~~~~~---~~gC~GG~~~~a~~-~~~~~~Gi~~e 182 (314)
++||||||.||+|||||+++++|+++.++++ +.++||+|+|++|..... ..+|.||.+..++. +++++ |+++|
T Consensus 9 ~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~~~~-Gi~~e 87 (223)
T cd02619 9 LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLVALK-GIPPE 87 (223)
T ss_pred CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHHHHc-CCCcc
Confidence 6999999999999999999999999999987 889999999999986432 37999999999998 77655 99999
Q ss_pred CCCCCCCCCCcccCC----CCCcceEeceeEEecCCCHHHHHHHHHccCCeEEEEEecccccccCCceEe---cCCCCCC
Q 036910 183 EAYPYTGKDGVCKFS----SENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYS---STKCGNT 255 (314)
Q Consensus 183 ~~yPY~~~~~~c~~~----~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~---~~~~~~~ 255 (314)
++|||......|... ......++..+..+...++++||++|.++|||++++.+.+.|..|++|++. ...+...
T Consensus 88 ~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
T cd02619 88 EDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYED 167 (223)
T ss_pred ccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCccccccccccccCC
Confidence 999999887777532 333456777777777666899999999999999999998899999999873 1111222
Q ss_pred CCCCCeEEEEEEeeecC--CcceEEEEcCCCCCcCCCcEEEEEeCC
Q 036910 256 PMDVNHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGK 299 (314)
Q Consensus 256 ~~~~~Hav~iVGyg~~~--g~~ywivkNSWG~~WG~~Gy~~i~~~~ 299 (314)
...++|||+|||||++. +++|||||||||+.||++||+||+++.
T Consensus 168 ~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 168 GDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred CccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 33589999999999987 899999999999999999999999963
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=6.9e-39 Score=283.25 Aligned_cols=198 Identities=32% Similarity=0.589 Sum_probs=164.2
Q ss_pred cCccccCCCCchhHHHhhHHHHHHHHHHHcC-C-CcccCHHHHHhhhcCCCCCCCCCCChhhHHHHHHHcCCcCCCCCCC
Q 036910 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFG-K-GISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEAYP 186 (314)
Q Consensus 109 vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g-~-~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yP 186 (314)
+.||-|||+|++.|||+++++...+++|... + ...||+|+|++|... ...||+||..+.|+-|+.+. |++...+||
T Consensus 223 iH~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h-~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP 300 (470)
T KOG1544|consen 223 IHEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTH-QQQGCRGGRLDRAWWYLRKR-GVVSDHCYP 300 (470)
T ss_pred ccCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhh-hhccCccCcccchheeeecc-ccccccccc
Confidence 8899999999999999999999999988753 3 568999999999853 57899999999999999876 999999999
Q ss_pred CCCC----CCc------------------ccCC--CCCcceEeceeEEecCCCHHHHHHHHHccCCeEEEEEeccccccc
Q 036910 187 YTGK----DGV------------------CKFS--SENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFY 242 (314)
Q Consensus 187 Y~~~----~~~------------------c~~~--~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y 242 (314)
|.+. .+. |... .++..+++...+.++ .+|++|++.|+.+|||-+.+.|.++|+.|
T Consensus 301 ~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVS-SnE~eImkElM~NGPVQA~m~VHEDFF~Y 379 (470)
T KOG1544|consen 301 FSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVS-SNEKEIMKELMENGPVQALMEVHEDFFLY 379 (470)
T ss_pred ccCCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeecc-CCHHHHHHHHHhCCChhhhhhhhhhhhhh
Confidence 9742 122 3322 123345566666665 46899999999999999999999999999
Q ss_pred CCceEecCCCCCC-----CCCCCeEEEEEEeeecCC-----cceEEEEcCCCCCcCCCcEEEEEeCCCccccCCcee
Q 036910 243 KSGVYSSTKCGNT-----PMDVNHAVVAVGYGVEDG-----VPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCAS 309 (314)
Q Consensus 243 ~~Gi~~~~~~~~~-----~~~~~Hav~iVGyg~~~g-----~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~ 309 (314)
++|||.+.+.... ...+.|+|.|.|||++.+ .+|||..||||+.|||+|||||-||.|.|-|++.+.
T Consensus 380 kgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvI 456 (470)
T KOG1544|consen 380 KGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVI 456 (470)
T ss_pred ccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhh
Confidence 9999998654322 224789999999998632 479999999999999999999999999999998753
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.6e-29 Score=226.72 Aligned_cols=183 Identities=28% Similarity=0.450 Sum_probs=123.8
Q ss_pred cCccccCCCCchhHHHhhHHHHHHHHHHHcCCCcccCHHHHHh-----hhcCCCCCCCCCCChhhHHHHHHHcCCcCCCC
Q 036910 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVD-----CAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEE 183 (314)
Q Consensus 109 vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g~~~~lS~q~l~d-----c~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~ 183 (314)
|+||||||.||+||||++++++|+.+.-.. ...+|+..+.. |...+...--+||....+..|+.++.|.+.|.
T Consensus 111 vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~a~l~e~sgpv~et 188 (372)
T COG4870 111 VSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSAAYLTEWSGPVYET 188 (372)
T ss_pred cccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCccccccccccccCCcchhh
Confidence 999999999999999999999999876432 34555544432 33222111124777777777888999999999
Q ss_pred CCCCCCCCCcccCCCCCcceEeceeEEecC----CCHHHHHHHHHccCCeEEEEEe--cccccccCCceEecCCCCCCCC
Q 036910 184 AYPYTGKDGVCKFSSENVGVQVLDSVNITL----GAEDELQHAVGLVRPVSVAFEV--VDGFRFYKSGVYSSTKCGNTPM 257 (314)
Q Consensus 184 ~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~----~~~~~ik~~l~~~gPV~v~~~~--~~~f~~y~~Gi~~~~~~~~~~~ 257 (314)
+-||......|..... ...++.....++. .+...|++++...|-++.+|.+ ...+. ...+.+.... . .
T Consensus 189 ~d~y~~~s~~~~~~~p-~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~-~~~~~~~~~s---~-~ 262 (372)
T COG4870 189 DDPYSENSYFSPTNLP-VTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLG-ICIPYPYVDS---G-E 262 (372)
T ss_pred cCccccccccCCcCCc-hhhccccceecccchhhhcccchHHHHhhhccccceeEEecccccc-cccCCCCCCc---c-c
Confidence 9999887666654221 1122222222221 2344588888888887755554 33222 2223333221 1 3
Q ss_pred CCCeEEEEEEeeec----------CCcceEEEEcCCCCCcCCCcEEEEEeCC
Q 036910 258 DVNHAVVAVGYGVE----------DGVPYWLIKNSWGENWGDHGYFKMEMGK 299 (314)
Q Consensus 258 ~~~Hav~iVGyg~~----------~g~~ywivkNSWG~~WG~~Gy~~i~~~~ 299 (314)
..+|||+||||||. .|.++||||||||++||++|||||++..
T Consensus 263 ~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 263 NWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred cccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 57999999999984 3567999999999999999999999864
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.94 E-value=1.3e-26 Score=220.30 Aligned_cols=191 Identities=24% Similarity=0.386 Sum_probs=138.3
Q ss_pred cccccccccCccccCCCCchhHHHhhHHHHHHHHHHH-cCCCcccCHHHHHhhhcC------------------------
Q 036910 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQA-FGKGISLSEQQLVDCAQA------------------------ 155 (314)
Q Consensus 101 ~~y~l~~nvtpVkdQg~cGsCwAfa~~~~lE~~~~~~-~g~~~~lS~q~l~dc~~~------------------------ 155 (314)
..|+..+..+||+||++.|.||.||++..||..+.++ ..+.+.||+.++...++-
T Consensus 46 ~~Fs~~v~~~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~ 125 (437)
T cd00585 46 RVFSIEVPTEPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQ 125 (437)
T ss_pred CceEEEeCCCCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHH
Confidence 3465666678999999999999999999999988875 456899999998763320
Q ss_pred --CCCCCCCCCChhhHHHHHHHcCCcCCCCCCCCCCC---------------------------CC--------------
Q 036910 156 --FNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGK---------------------------DG-------------- 192 (314)
Q Consensus 156 --~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~---------------------------~~-------------- 192 (314)
......+||....+...+.++ |+++++.||-+.. .+
T Consensus 126 ~ll~~~~~DGGqw~m~~~li~KY-GvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~ 204 (437)
T cd00585 126 FLLANPQNDGGQWDMLVNLIEKY-GLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEML 204 (437)
T ss_pred HHHhCCcCCCCchHHHHHHHHHc-CCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 024567899999999998876 9999999996411 00
Q ss_pred ------------c---------------------------------ccC--------CCC--C---cce-----------
Q 036910 193 ------------V---------------------------------CKF--------SSE--N---VGV----------- 203 (314)
Q Consensus 193 ------------~---------------------------------c~~--------~~~--~---~~~----------- 203 (314)
. |.. .+. + ..+
T Consensus 205 ~~iy~il~~~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g 284 (437)
T cd00585 205 KEVYRILAIALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGG 284 (437)
T ss_pred HHHHHHHHHHcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCccccc
Confidence 0 000 000 0 000
Q ss_pred EeceeEEecCCCHHHHH----HHHHccCCeEEEEEecccccccCCceEecCC--------------------CCCCCCCC
Q 036910 204 QVLDSVNITLGAEDELQ----HAVGLVRPVSVAFEVVDGFRFYKSGVYSSTK--------------------CGNTPMDV 259 (314)
Q Consensus 204 ~~~~~~~~~~~~~~~ik----~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~--------------------~~~~~~~~ 259 (314)
+...+.+++ .+.++ ++|..++||.+++++. .|..|++||+.... |. ....
T Consensus 285 ~~~~y~Nvp---~d~l~~~~~~~L~~g~pV~~g~Dv~-~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~--es~~ 358 (437)
T cd00585 285 RPILYLNVP---MDVLKKAAIAQLKDGEPVWFGCDVG-KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYG--ESLM 358 (437)
T ss_pred ccceEEecC---HHHHHHHHHHHHhcCCCEEEEEEcC-hhhccCCccccCcccchhhhcCccccCCHHHHHhhc--CCcC
Confidence 111223332 44555 6778899999999996 47799999995431 21 1246
Q ss_pred CeEEEEEEeeecC-Cc-ceEEEEcCCCCCcCCCcEEEEEeC
Q 036910 260 NHAVVAVGYGVED-GV-PYWLIKNSWGENWGDHGYFKMEMG 298 (314)
Q Consensus 260 ~Hav~iVGyg~~~-g~-~ywivkNSWG~~WG~~Gy~~i~~~ 298 (314)
+|||+|||||.+. |+ .||+||||||+.||++||++|+++
T Consensus 359 tHAM~ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 359 THAMVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CeEEEEEEEEecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 8999999999754 76 699999999999999999999974
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.84 E-value=1.2e-19 Score=172.86 Aligned_cols=232 Identities=21% Similarity=0.337 Sum_probs=130.4
Q ss_pred HHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHh----hCCCCcccccccccCccccCCCCchhHHHhhHHHHHHHHHH
Q 036910 61 SFARFARRYGKIYESVEEMKLRFATFSKNLDLIRS----TNCKGLSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQ 136 (314)
Q Consensus 61 ~f~~f~~~~~k~y~~~~e~~~R~~~f~~n~~~i~~----~n~~~~~y~l~~nvtpVkdQg~cGsCwAfa~~~~lE~~~~~ 136 (314)
...+|...|.+. ..-...+..+-..++..+.. .+.....|+..+...||+||++.|.||.||++..++..+.+
T Consensus 6 ~l~~~~~~~~~~---~~~~~a~na~~~~~i~~a~~~~~~~~~~~~~Fs~~v~~~~vtnQk~SGRCW~FA~lN~lR~~~~k 82 (438)
T PF03051_consen 6 QLSKWRSEFASD---PKNRLAQNAVTKNGINDAALNREAVKKNDFVFSVEVDTGPVTNQKSSGRCWLFAALNVLRHEIMK 82 (438)
T ss_dssp HHHHHHHHHCTS---HHHHHHHHHHTTS-HHHHHB-HHHHHH-----SEEESS-S--B--BSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHhcCHHHHhhChhhhhccCCceeEeeccCCCCCCCCCCCcchhhchHHHHHHHHH
Confidence 455666666543 23333344444444433221 11223446666667899999999999999999999999998
Q ss_pred HcC-CCcccCHHHHHhhhc----------------C----------CCCCCCCCCChhhHHHHHHHcCCcCCCCCCCCCC
Q 036910 137 AFG-KGISLSEQQLVDCAQ----------------A----------FNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYTG 189 (314)
Q Consensus 137 ~~g-~~~~lS~q~l~dc~~----------------~----------~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~ 189 (314)
+.+ +.+.||+.++...++ . ......+||....+...++++ |+++.+.||-+.
T Consensus 83 k~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~DGGqw~~~~nli~KY-GvVPk~~mpet~ 161 (438)
T PF03051_consen 83 KLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSDGGQWDMVVNLIKKY-GVVPKSVMPETF 161 (438)
T ss_dssp HCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S-B-HHHHHHHHHHH----BGGGSTTGC
T ss_pred HcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCCCCchHHHHHHHHHc-CcCcHhhCCCCC
Confidence 876 789999999874321 0 012357899999998888876 999999999652
Q ss_pred C---------------------------C--------------------------Ccc----------------------
Q 036910 190 K---------------------------D--------------------------GVC---------------------- 194 (314)
Q Consensus 190 ~---------------------------~--------------------------~~c---------------------- 194 (314)
. . |.+
T Consensus 162 ~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~~lG~PP~~F~~ey~dkd~~~~~~~~~T 241 (438)
T PF03051_consen 162 SSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAIYLGEPPEKFTWEYRDKDKKYHRGKNYT 241 (438)
T ss_dssp GCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHH---SSSEEEEEE-TTS-EEEEEEE-
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCChheeEEEeccccccccccccC
Confidence 1 0 000
Q ss_pred ---------cCCCC---------------Ccce-----------EeceeEEecCCC-HHHHHHHHHccCCeEEEEEeccc
Q 036910 195 ---------KFSSE---------------NVGV-----------QVLDSVNITLGA-EDELQHAVGLVRPVSVAFEVVDG 238 (314)
Q Consensus 195 ---------~~~~~---------------~~~~-----------~~~~~~~~~~~~-~~~ik~~l~~~gPV~v~~~~~~~ 238 (314)
..+.+ ...+ +...+.+++... .+.+..+|..+.||..+.+|...
T Consensus 242 P~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvpid~lk~~~i~~Lk~G~~VwfgcDV~k~ 321 (438)
T PF03051_consen 242 PLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVPIDELKDAAIKSLKAGYPVWFGCDVGKF 321 (438)
T ss_dssp HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--HHHHHHHHHHHHHTT--EEEEEETTTT
T ss_pred chhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccCHHHHHHHHHHHHHcCCcEEEeccCCcc
Confidence 00000 0001 111233443221 23455677789999999999764
Q ss_pred ccccCCceEecCCCC------------------CCCCCCCeEEEEEEeee-cCCc-ceEEEEcCCCCCcCCCcEEEEEe
Q 036910 239 FRFYKSGVYSSTKCG------------------NTPMDVNHAVVAVGYGV-EDGV-PYWLIKNSWGENWGDHGYFKMEM 297 (314)
Q Consensus 239 f~~y~~Gi~~~~~~~------------------~~~~~~~Hav~iVGyg~-~~g~-~ywivkNSWG~~WG~~Gy~~i~~ 297 (314)
...+.||.....-+ ......+|||+|||.+. ++|+ .+|+|+||||+..|.+||+.|+.
T Consensus 322 -~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd 399 (438)
T PF03051_consen 322 -FDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSD 399 (438)
T ss_dssp -EETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred -ccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCCeeEEEEEcCCCCCCCCCcEEEECH
Confidence 45678988543211 11234689999999997 5665 59999999999999999999985
No 20
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=99.26 E-value=5.5e-11 Score=107.12 Aligned_cols=87 Identities=16% Similarity=0.304 Sum_probs=64.4
Q ss_pred cccccccccCccccCCCCchhHHHhhHHHHHHHHHHHcC-CCcccCHHHHHhhhcC------------------------
Q 036910 101 LSYRLGLNISPVKDQGHCGSCWTFSTTGSLEAAYHQAFG-KGISLSEQQLVDCAQA------------------------ 155 (314)
Q Consensus 101 ~~y~l~~nvtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g-~~~~lS~q~l~dc~~~------------------------ 155 (314)
.-|+..+.-.||.||.+.|.||.||++.++.-.+....+ +.+.||..++...++-
T Consensus 49 ~vFs~~~~~d~vtNQk~SGRCWmFAAlNtfRhk~~~el~le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~ 128 (444)
T COG3579 49 PVFSTDLTKDKVTNQKQSGRCWMFAALNTFRHKLISELKLEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVS 128 (444)
T ss_pred ceeeeeeccCccccccccceehHHHHHHHHHHHHHHhcCcceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHH
Confidence 346666667799999999999999999998877665554 5688998887655430
Q ss_pred --CCCCCCCCCChhhHHHHHHHcCCcCCCCCCCCC
Q 036910 156 --FNNQGCNGGLPSQAFEYIKYNGGLDTEEAYPYT 188 (314)
Q Consensus 156 --~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~ 188 (314)
-...--+||-.+.....+.+. |+++.+.||-.
T Consensus 129 ~LL~~PqqDGGQwdM~v~l~eKY-GvVpK~~ypes 162 (444)
T COG3579 129 FLLATPQQDGGQWDMFVSLFEKY-GVVPKSVYPES 162 (444)
T ss_pred HHHcCccccCchHHHHHHHHHHh-CCCchhhcccc
Confidence 012345788777766666655 99999999964
No 21
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=98.90 E-value=2.4e-09 Score=74.08 Aligned_cols=47 Identities=47% Similarity=0.782 Sum_probs=40.4
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHhhC-CCCcccccccc
Q 036910 62 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTN-CKGLSYRLGLN 108 (314)
Q Consensus 62 f~~f~~~~~k~y~~~~e~~~R~~~f~~n~~~i~~~n-~~~~~y~l~~n 108 (314)
|++|+.+|+|.|.+.+|...|+.+|++|++.|.+|| ....+|++++|
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N 48 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLN 48 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SS
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCc
Confidence 789999999999999999999999999999999999 66778999987
No 22
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=98.60 E-value=6.6e-08 Score=66.39 Aligned_cols=47 Identities=47% Similarity=0.759 Sum_probs=42.9
Q ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHhhCCCC-cccccccc
Q 036910 62 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKG-LSYRLGLN 108 (314)
Q Consensus 62 f~~f~~~~~k~y~~~~e~~~R~~~f~~n~~~i~~~n~~~-~~y~l~~n 108 (314)
|++|+.+|+|.|.+.+|...|+.+|.+|++.|+.||..+ .+|++++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N 48 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLN 48 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCc
Confidence 678999999999999999999999999999999999765 57888887
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=98.26 E-value=6e-07 Score=81.20 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=60.1
Q ss_pred cCccccCCCCchhHHHhhHHHHHHHHHHHcC-CCcccCHHHHHhhhcC----------------------------CCCC
Q 036910 109 ISPVKDQGHCGSCWTFSTTGSLEAAYHQAFG-KGISLSEQQLVDCAQA----------------------------FNNQ 159 (314)
Q Consensus 109 vtpVkdQg~cGsCwAfa~~~~lE~~~~~~~g-~~~~lS~q~l~dc~~~----------------------------~~~~ 159 (314)
-+||.||.+.|-||.|+.+..+.-.+.++.+ +.+.||..+|+..++- -.+.
T Consensus 62 ~~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP 141 (457)
T KOG4128|consen 62 RQPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNP 141 (457)
T ss_pred CcccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCC
Confidence 7899999999999999999998777666654 5688999988753320 0133
Q ss_pred CCCCCChhhHHHHHHHcCCcCCCCCCCC
Q 036910 160 GCNGGLPSQAFEYIKYNGGLDTEEAYPY 187 (314)
Q Consensus 160 gC~GG~~~~a~~~~~~~~Gi~~e~~yPY 187 (314)
.-+||........+++. |+.+.++||-
T Consensus 142 ~~DGGqw~MfvNlVkKY-GviPKkcy~~ 168 (457)
T KOG4128|consen 142 VPDGGQWQMFVNLVKKY-GVIPKKCYLH 168 (457)
T ss_pred CCCCchHHHHHHHHHHh-CCCcHHhccc
Confidence 45788888888877766 9999999974
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.42 E-value=0.0018 Score=51.85 Aligned_cols=127 Identities=23% Similarity=0.314 Sum_probs=59.9
Q ss_pred ccccC--CCCchhHHHhhHHHHHHHHHHHcCCCcccCHHHHHhhhcCCC----C--------CCCCCCChhhHHHHHHHc
Q 036910 111 PVKDQ--GHCGSCWTFSTTGSLEAAYHQAFGKGISLSEQQLVDCAQAFN----N--------QGCNGGLPSQAFEYIKYN 176 (314)
Q Consensus 111 pVkdQ--g~cGsCwAfa~~~~lE~~~~~~~g~~~~lS~q~l~dc~~~~~----~--------~gC~GG~~~~a~~~~~~~ 176 (314)
|...| ..-..|+.-|++-+++.. |+ ..++.+|.+-..... + .....|.....+..+.+.
T Consensus 4 p~~~Q~~~~~~~Cg~as~~mvl~~~-----g~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (144)
T PF13529_consen 4 PYYSQYDETSYGCGPASAAMVLNYY-----GK--NISQEDLADEAGTNPDGDPNTGFVGNPYYDSGYGTSPDDLARYLEK 76 (144)
T ss_dssp -----TTT-TT-HHHHHHHHHHHHT-----T------HHHHHHHS-EE-E--TTTSEEB-SSTS-B----HHHHHHHHHH
T ss_pred CcEEeCCCCCCcCHHHHHHHHHHHc-----CC--CCCHHHHHHHhhhccCCCCCcccccCccccCCCccccHHHHHHHHH
Confidence 44556 555679998888777754 33 688888887653211 0 011223333333333222
Q ss_pred CCcCCCCCCCCCCCCCcccCCCCCcceEeceeEEecCCCHHHHHHHHHccCCeEEEEEecccccccCCceEecCCCCCCC
Q 036910 177 GGLDTEEAYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTP 256 (314)
Q Consensus 177 ~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~~~~~~ 256 (314)
.|. ........+.+.|++.|..+.||.+.+... +....++.+...
T Consensus 77 ~~~---------------------------~~~~~~~~~~~~i~~~i~~G~Pvi~~~~~~--~~~~~~~~~~~~------ 121 (144)
T PF13529_consen 77 YGY---------------------------KATDTSDASFDDIKQEIDAGRPVIVSVNSG--WRPPNGDGYDGT------ 121 (144)
T ss_dssp H-T---------------------------TEEE-TTS-HHHHHHHHHTT--EEEEEETT--SS--TTEEEEE-------
T ss_pred cCc---------------------------ceeeccCCcHHHHHHHHHCCCcEEEEEEcc--cccCCCCCcCCC------
Confidence 232 011112235788999999999999999742 100122223221
Q ss_pred CCCCeEEEEEEeeecCCcceEEEEcCC
Q 036910 257 MDVNHAVVAVGYGVEDGVPYWLIKNSW 283 (314)
Q Consensus 257 ~~~~Hav~iVGyg~~~g~~ywivkNSW 283 (314)
..+|.|+|+||+++. +++|..+|
T Consensus 122 -~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 122 -YGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp -TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred -cCCEEEEEEEEeCCC---EEEEeCCC
Confidence 368999999998743 78888887
No 25
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.35 E-value=0.05 Score=45.60 Aligned_cols=120 Identities=23% Similarity=0.306 Sum_probs=69.5
Q ss_pred ccCCCCchhHHHhhHHHHHHHHHHH--------cCCCcccCHHHHHhhhcCCCCCCCCCCChhhHHHHHHHcCCcCCCCC
Q 036910 113 KDQGHCGSCWTFSTTGSLEAAYHQA--------FGKGISLSEQQLVDCAQAFNNQGCNGGLPSQAFEYIKYNGGLDTEEA 184 (314)
Q Consensus 113 kdQg~cGsCwAfa~~~~lE~~~~~~--------~g~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~ 184 (314)
..||.-+=|-+|+.++.|-+..... ..-...+|+++|-+++. .+.+.++|.+.. |....
T Consensus 17 EtQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~----------~~~~~i~y~ks~-g~~~~-- 83 (175)
T PF05543_consen 17 ETQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL----------TPNQMIKYAKSQ-GRNPQ-- 83 (175)
T ss_dssp ---SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B-----------HHHHHHHHHHT-TEEEE--
T ss_pred eccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC----------CHHHHHHHHHHc-Ccchh--
Confidence 4589999999999998887652211 11235677777766542 345778887655 43211
Q ss_pred CCCCCCCCcccCCCCCcceEeceeEEecCCCHHHHHHHHHccCCeEEEEEecccccccCCceEecCCCCCCCCCCCeEEE
Q 036910 185 YPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVV 264 (314)
Q Consensus 185 yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~~~~~~~~~~Hav~ 264 (314)
+.+ ...+.+++++.+.++.|+.+..+..+ +. + ....+||++
T Consensus 84 -----------------------~~n-~~~s~~eV~~~~~~nk~i~i~~~~v~------~~--------~-~~~~gHAla 124 (175)
T PF05543_consen 84 -----------------------YNN-RMPSFDEVKKLIDNNKGIAILADRVE------QT--------N-GPHAGHALA 124 (175)
T ss_dssp -----------------------EEC-S---HHHHHHHHHTT-EEEEEEEETT------SC--------T-TB--EEEEE
T ss_pred -----------------------Hhc-CCCCHHHHHHHHHcCCCeEEEecccc------cC--------C-CCccceeEE
Confidence 000 01247889999998899998776422 11 0 114689999
Q ss_pred EEEeee-cCCcceEEEEcCCC
Q 036910 265 AVGYGV-EDGVPYWLIKNSWG 284 (314)
Q Consensus 265 iVGyg~-~~g~~ywivkNSWG 284 (314)
||||-. .+|.++.++=|=|=
T Consensus 125 vvGya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 125 VVGYAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp EEEEEEETTSEEEEEEE-TT-
T ss_pred EEeeeecCCCCeEEEEeCCcc
Confidence 999987 55688999988874
No 26
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=93.17 E-value=0.38 Score=41.93 Aligned_cols=63 Identities=21% Similarity=0.315 Sum_probs=38.9
Q ss_pred CHHHHHHHHHccCCeEEEEEecccccc---cCCceEe--cCC-CCCCCCCCCeEEEEEEeeecCCcceEEEEc
Q 036910 215 AEDELQHAVGLVRPVSVAFEVVDGFRF---YKSGVYS--STK-CGNTPMDVNHAVVAVGYGVEDGVPYWLIKN 281 (314)
Q Consensus 215 ~~~~ik~~l~~~gPV~v~~~~~~~f~~---y~~Gi~~--~~~-~~~~~~~~~Hav~iVGyg~~~g~~ywivkN 281 (314)
+.++|...|..+||+.+-++.. +.. -+..... .+. +...+...+|-|+|+||+...+. ++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~--~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~~--~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS--LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATKE--FEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc--cccChhhcccccccccccccCCCCCccEEEEEEEeecCCCCe--EEEeC
Confidence 4789999999989888877763 111 0111111 111 12234467999999999875433 66666
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=91.01 E-value=0.61 Score=42.98 Aligned_cols=56 Identities=25% Similarity=0.465 Sum_probs=37.0
Q ss_pred HHHHHHHHHccCCeEEEEEecccccccCCceEecCCCCCCCCCCCeEEEEEEeeecCCcceEEEEc
Q 036910 216 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKN 281 (314)
Q Consensus 216 ~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkN 281 (314)
.+.|++.|..+.||.+.++.+ +..|...-|. ....+|.|+|+||+++++ .+.++-+
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~--~lpy~~~~~~-------~~~~~H~i~v~G~d~~~~-~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY--YLPYRPNYYK-------KHHADHYIVVYGYDEEED-VFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc--cCCCCccccc-------cccCCcEEEEEEEeCCCC-EEEEEcC
Confidence 568899998888999998873 2334333221 113589999999987543 3555433
No 28
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.27 E-value=1.4 Score=37.13 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=38.7
Q ss_pred EEecCCCHHHHHHHHHccCCeEEEEEecccccccCCceEecCCCCCCCCCCCeEEEEEEeeecCCcceEEEEcCCCC
Q 036910 209 VNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGE 285 (314)
Q Consensus 209 ~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~ 285 (314)
.+++-.+..+|+..|..+.||.+-... |-. ..-|+|+|.|||+. ++..-++||.
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~---~~~----------------~s~H~v~itgyDk~----n~yynDpyG~ 169 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN---FHS----------------YSIHSVLITGYDKY----NIYYNDPYGY 169 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec---ccc----------------cceeeeEeeccccc----ceEecccccc
Confidence 344556788999999999999876543 211 13699999999873 5666777753
No 29
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=82.56 E-value=20 Score=29.72 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=28.5
Q ss_pred CHHHHHHHHHccCCeEEEEEecccccccCCceEecCCCCCCCCCCCeEEEEEEeeec
Q 036910 215 AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE 271 (314)
Q Consensus 215 ~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~~~~~~~~~~Hav~iVGyg~~ 271 (314)
+.+.+...|.++||+-++..... .....|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~------------------~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPG------------------DSWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC------------------CcceeeEEEEEeecCC
Confidence 36789999999999999954421 0124699999998654
No 30
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=81.12 E-value=1.5 Score=32.07 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=14.5
Q ss_pred CCchhHHHHHHHHHHHHHHh
Q 036910 1 MARPVQLVSSVILLLCCAAA 20 (314)
Q Consensus 1 M~~~~~l~~~ll~~~~~~~~ 20 (314)
|||++.||++|.|-++++.+
T Consensus 1 MaRRlwiLslLAVtLtVALA 20 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALA 20 (100)
T ss_pred CchhhHHHHHHHHHHHHHhh
Confidence 99988888877765655443
No 31
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=79.18 E-value=6.8 Score=31.02 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=31.3
Q ss_pred HHHHHHccCCeEEEEEecccccccCCceEecCCCCCCCCCCCeEEEEEEeeecCCcceEEEEcCC
Q 036910 219 LQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSW 283 (314)
Q Consensus 219 ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 283 (314)
+++.+....||.+.++.. . . ....+|.|+|+||+. + +..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~---------~----~----~~~~gH~vVv~g~~~-~--~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG---------V----S----ITPSGHAMVVIGYDR-K--GNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC---------c----c----cCCCCeEEEEEEEcC-C--CCEEEECCC
Confidence 778888899999988651 0 0 113689999999972 1 336677775
No 32
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=75.66 E-value=9.8 Score=35.22 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.9
Q ss_pred CCeEEEEEEeeecC--CcceEEEEcCCCC
Q 036910 259 VNHAVVAVGYGVED--GVPYWLIKNSWGE 285 (314)
Q Consensus 259 ~~Hav~iVGyg~~~--g~~ywivkNSWG~ 285 (314)
.+||-.|++...-+ +.+...+||-||.
T Consensus 235 ~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEEccCceEEEEecCCccC
Confidence 58999999998766 7889999999995
No 33
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=48.02 E-value=29 Score=31.65 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=19.6
Q ss_pred CCeEEEEEEeeecCC----cceEEEEcCCCC
Q 036910 259 VNHAVVAVGYGVEDG----VPYWLIKNSWGE 285 (314)
Q Consensus 259 ~~Hav~iVGyg~~~g----~~ywivkNSWG~ 285 (314)
.+||-.|+++...++ ...-.++|-||.
T Consensus 213 ~~HaY~Vl~~~~~~~~~~~~~lv~LrNPwg~ 243 (298)
T PF00648_consen 213 PGHAYAVLDVREVNGNGEGHRLVKLRNPWGS 243 (298)
T ss_dssp TTS-EEEEEEEEEEETTEEEEEEEEE-TTSS
T ss_pred cceeEEEEEEEeeccccceeEEEEEcCCCcc
Confidence 589999999976432 567889999995
No 34
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=40.05 E-value=1.5e+02 Score=25.20 Aligned_cols=52 Identities=27% Similarity=0.507 Sum_probs=31.3
Q ss_pred HHHHHHHHccCCeEEEEEecccccccCCceEecCCCCCCCCCCCeEEEEEEeeecCCcceEEEEcCCCCCcCCCcEEE
Q 036910 217 DELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFK 294 (314)
Q Consensus 217 ~~ik~~l~~~gPV~v~~~~~~~f~~y~~Gi~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~ 294 (314)
+.|+..|.++.||.+.-.-.. .+||.+|=||..+ .||-+==.||-. .+|||+
T Consensus 141 ~~i~~el~~~rPV~~~g~~~~---------------------~GHawViDGy~~~---~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSKS---------------------GGHAWVIDGYDSD---GYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEETT---------------------EEEEEEEEEEESS---SEEEEE-SSTTT--T-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecCC---------------------CCeEEEEcCccCC---CeEEEeeCccCC--CCCccC
Confidence 568888888999986543211 1799999999543 466443334433 678885
No 35
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=38.39 E-value=58 Score=30.24 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=22.2
Q ss_pred CCeEEEEEEeeecCCcc--eEEEEcCCCC
Q 036910 259 VNHAVVAVGYGVEDGVP--YWLIKNSWGE 285 (314)
Q Consensus 259 ~~Hav~iVGyg~~~g~~--ywivkNSWG~ 285 (314)
.+||-.|++...-++.+ -..+||-||.
T Consensus 227 ~~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 227 KGHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred cCccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 58999999997655555 8999999993
No 36
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=37.84 E-value=11 Score=30.28 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHH
Q 036910 1 MARPVQLVSSVILLLCCA 18 (314)
Q Consensus 1 M~~~~~l~~~ll~~~~~~ 18 (314)
|+-|.++|+++|||.+++
T Consensus 1 m~pr~l~~LavLL~~A~L 18 (143)
T PF05887_consen 1 MTPRHLCLLAVLLFGAAL 18 (143)
T ss_dssp ------------------
T ss_pred Cccccccccccccccccc
Confidence 665555555555544433
No 37
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=36.29 E-value=65 Score=22.07 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=8.4
Q ss_pred CCchhHHHHHHHH
Q 036910 1 MARPVQLVSSVIL 13 (314)
Q Consensus 1 M~~~~~l~~~ll~ 13 (314)
||..++++++|-+
T Consensus 1 MA~Kl~vialLC~ 13 (65)
T PF10731_consen 1 MASKLIVIALLCV 13 (65)
T ss_pred CcchhhHHHHHHH
Confidence 8887666655543
No 38
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=23.84 E-value=3.6e+02 Score=24.61 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCccCCHHHHHHHHHHHHHHH
Q 036910 61 SFARFARRYGKIYESVEEMKLRFATFSKNL 90 (314)
Q Consensus 61 ~f~~f~~~~~k~y~~~~e~~~R~~~f~~n~ 90 (314)
.+.++...|.+.+...++...+.....+-+
T Consensus 60 ~~~~~~~~~~~~~~en~~Lk~~l~~~~~~~ 89 (284)
T COG1792 60 GVLEFLKSLKDLALENEELKKELAELEQLL 89 (284)
T ss_pred hHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 455556666666665555555544444433
No 39
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=23.48 E-value=1.4e+02 Score=29.20 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhCCccCCH
Q 036910 58 HALSFARFARRYGKIYESV 76 (314)
Q Consensus 58 ~~~~f~~f~~~~~k~y~~~ 76 (314)
...+|++-..+|+|.|++.
T Consensus 292 EanLFEeALeKyGKDFndI 310 (693)
T KOG3554|consen 292 EANLFEEALEKYGKDFNDI 310 (693)
T ss_pred hhHHHHHHHHHhcccHHHH
Confidence 4579999999999998754
No 40
>cd03581 NTR_Sfrp3_like NTR domain, Secreted frizzled-related protein (Sfrp) 3-like subfamily; composed of proteins similar to human Sfrp3 and Sfrp4. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse functions and are thought to work in Wnt signaling indirectly, as modulators or antagonists by binding Wnt ligands, and directly, via the Wnt receptor, Frizzled. They participate in regulating the patterning along the anteroposterior axis in vertebrates. Human Sfrp3 may suppress the growth and invasiveness of androgen-independent prostate cancer cells.
Probab=23.23 E-value=84 Score=24.37 Aligned_cols=41 Identities=24% Similarity=0.533 Sum_probs=29.7
Q ss_pred ecCCCCCCCCCCCeEEEEEEeeecCCcceEEEEcCCCCCcC
Q 036910 248 SSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWG 288 (314)
Q Consensus 248 ~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG 288 (314)
....|..+....+..-+|.|.++.....|.+-+|||=..|=
T Consensus 52 ~~~~C~cp~l~~gk~YLImG~~~~~~~~~~ld~~S~Ve~W~ 92 (111)
T cd03581 52 TNSGCLCPPLTPNEEYIIMGYEDEERSRLLLVEGSLAEKWK 92 (111)
T ss_pred EcCCCCCccccCCCEEEEEecCCCCcceEEeCCceEEEEhh
Confidence 34567665555799999999975534678888888866663
No 41
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=20.71 E-value=88 Score=24.32 Aligned_cols=29 Identities=31% Similarity=0.626 Sum_probs=15.7
Q ss_pred HHHHHHhhCCCCcccccccccCccccCCCCchhHH
Q 036910 89 NLDLIRSTNCKGLSYRLGLNISPVKDQGHCGSCWT 123 (314)
Q Consensus 89 n~~~i~~~n~~~~~y~l~~nvtpVkdQg~cGsCwA 123 (314)
-|.+|+++....+.|+.+ --+|.||||-.
T Consensus 34 ~L~~Ik~~~D~sLafr~s------Cr~giCGsCam 62 (110)
T PF13085_consen 34 ALNYIKEEQDPSLAFRYS------CRSGICGSCAM 62 (110)
T ss_dssp HHHHHHHHT-TT--B--S------SSSSSSSTTEE
T ss_pred HHHHHHhccCCCeEEEec------CCCCCCCCCEE
Confidence 345666655556666533 44799999954
Done!