BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036911
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 312 bits (800), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 171/375 (45%), Positives = 232/375 (61%), Gaps = 27/375 (7%)
Query: 1 MEVQQVLCMNGGRGDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLP---ECLKIADL 57
ME+Q+VL MNGG GDTSYA NS + + KP+L+ +++L LP +C+K+ADL
Sbjct: 1 MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 58 GCSSGPNTLSLLWEIIDTID--GTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEK 115
GC+SGPNTL + +I+ +ID G K+ E P Q+FLNDL NDFN++FK LP FY K
Sbjct: 61 GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 116 LKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNK 175
L++ G G C I +PGSFY RLFP +S+HF+HS Y L WLSQVP GLV+E G+ NK
Sbjct: 121 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTNK 180
Query: 176 GHICMAKTS--PVG--------RDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTG 225
G I +K S PV +DFT FL SEE+ S G +LL+ I + D R
Sbjct: 181 GSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICKGVEL-DAR-NA 238
Query: 226 WELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDWD 285
+LL + +ND+V+EG +EE K+D FNLP Y PS EEV+ +++ EGSF I + V +D
Sbjct: 239 IDLLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYD 298
Query: 286 A--NKDDGSKSLTSGRHTRGKNIAKSIRAVSESMLASHFGEEIMDDLFERLAKKISEYLE 343
A + DD H + + +A S+RAV E +LASHFGE I+ D+F R AK ++ L
Sbjct: 299 AGFSIDD--------EHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKHAAKVLP 350
Query: 344 FAPGHSTTMVISMTK 358
G ++IS+ K
Sbjct: 351 LGKGFYNNLIISLAK 365
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 309 bits (792), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/380 (43%), Positives = 236/380 (62%), Gaps = 25/380 (6%)
Query: 1 MEVQQVLCMNGGRGDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLP---ECLKIADL 57
ME+Q+VL MNGG GDTSYA NS ++ KP+L+ I++L LP +C K+ DL
Sbjct: 1 MELQEVLHMNGGEGDTSYAKNSSYN-LFLIRVKPVLEQCIQELLRANLPNINKCFKVGDL 59
Query: 58 GCSSGPNTLSLLWEIIDTID--GTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEK 115
GC+SGPNT S + +I+ +ID G K+ E P Q+FLNDL NDFN++FK LP FY
Sbjct: 60 GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119
Query: 116 LKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNK 175
L++ G G C I +PGSFY RLFP +S+HF+HS Y LHWLSQVP GLV+E G+ +NK
Sbjct: 120 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNK 179
Query: 176 GHICMAKTS--PVG--------RDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTG 225
G I +K S P+ +DFT FL SEE++S G +LL+ I + + P
Sbjct: 180 GCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHP--NS 237
Query: 226 WELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDWD 285
+LL +++ND+V+EG +EE K+D FN+P YAPS EEV+ +++ EGSF I + +D
Sbjct: 238 MDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYD 297
Query: 286 A--NKDDGSKS-----LTSGRHTRGKNIAKSIRAVSESMLASHFGEEIMDDLFERLAKKI 338
A + DD + ++ H R ++A +R++ E +LASHFGE I+ DL R+AK
Sbjct: 298 AGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKNA 357
Query: 339 SEYLEFAPGHSTTMVISMTK 358
++ L G +++IS+ K
Sbjct: 358 AKVLRSGKGFYDSVIISLAK 377
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/372 (43%), Positives = 222/372 (59%), Gaps = 30/372 (8%)
Query: 1 MEVQQVLCMNGGRGDTSYANNSKIQKRAMLTAKPILQDSIKKLYC-NRLPECLKIADLGC 59
M+V+QVL M GG G+ SYA NS IQ++ + KPI + +I LY + + L IADLGC
Sbjct: 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60
Query: 60 SSGPNTLSLLWEIIDTIDGTCKRLNRE-APMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE 118
SSGPN L + E+I T++ K++ RE +P YQ+FLNDLPGNDFN IF+SLP
Sbjct: 61 SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP-------- 112
Query: 119 VKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHI 178
++ G CFI G+PGSFYGRLFP +LHF+HSSYSL WLSQVP G+ S NKG+I
Sbjct: 113 IENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES------NKGNI 166
Query: 179 CMAKTSP----------VGRDFTLFLTSRSEEILSGGHVLLSIIG--NDRKPGDPRCTGW 226
MA T P D LFL R++E++ GG ++L+I+G ++ + C W
Sbjct: 167 YMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIW 226
Query: 227 ELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDWDA 286
+LL + LN MV EGL+EE K+D FN+P Y PSP EV I EGSF I + + W +
Sbjct: 227 QLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSS 286
Query: 287 NKDDGSKSLTSGRHTRGKNIAKSIRAVSESMLASHFGEEIMDDLFERLAKKISEYLEFAP 346
DG G N+A+ +RAV+E +L HFGE I++D+F R I E +
Sbjct: 287 CTKDGDGG--GSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSKEK 344
Query: 347 GHSTTMVISMTK 358
+++S+ +
Sbjct: 345 TKFINVIVSLIR 356
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 189/363 (52%), Gaps = 31/363 (8%)
Query: 1 MEVQQVLCMNGGRGDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRL--PECLKIADLG 58
M+++++L M GG+G SYANNS Q + +L+++++ ++ N P DLG
Sbjct: 1 MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60
Query: 59 CSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEK--L 116
CSSG NT+ ++ I+ I + P + F +DLP NDFNT+F+ LP +
Sbjct: 61 CSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM 120
Query: 117 KEVKGSNFGPC-FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNK 175
+E ++ F+AG+PGSFY RLFP +++ F HS++SLHWLSQVPE + N+
Sbjct: 121 EECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNR 180
Query: 176 GHICM-----AKTSPVGRDFTL----FLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGW 226
G + + T+ R F FL +R+ E+ GG + L +G R DP G
Sbjct: 181 GRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLG--RTSVDPTDQGG 238
Query: 227 E--LLGVTL----NDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIH 280
L G +D+V EGLV K D FN+P YAPS ++ + V+ GSF I + ++
Sbjct: 239 AGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVY 298
Query: 281 T--VDWDANKDDGSKSLTSGRHTRGKNIAKSIRAVSESMLASHFGEEIMDDLFERLAKKI 338
N+ D + + G+ A S R+V+ ++ +H GEE+ + LF R+ +
Sbjct: 299 KGGSPLVVNEPDDASEV-------GRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESRA 351
Query: 339 SEY 341
+ +
Sbjct: 352 TSH 354
>pdb|2YBR|A Chain A, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YBR|D Chain D, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YBR|G Chain G, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YC1|A Chain A, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
pdb|2YC1|D Chain D, Crystal Structure Of The Human Derived Single Chain
Antibody Fragment (scfv) 9004g In Complex With Cn2 Toxin
From The Scorpion Centruroides Noxius Hoffmann
Length = 117
Score = 31.6 bits (70), Expect = 0.64, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 148 FVHSSYSLHWLSQVP-EGLVSESGVPLNKGHICMAKT 183
F +Y++HWL QVP EGL SG+ + G I A +
Sbjct: 27 FTFDNYAMHWLRQVPGEGLEWVSGISRSSGDIDYADS 63
>pdb|1MJG|M Chain M, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|N Chain N, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|O Chain O, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
pdb|1MJG|P Chain P, Crystal Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica (F. Clostridium Thermoaceticum)
Length = 729
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 274 IRRFDIHTVDWDANKDDGSKSLTSGRHTRGKNIAKSIRAVSESMLASHFGEEIMDDLFER 333
+RRF I VDW +++ GR K +AK ++ + +E ++ L E
Sbjct: 141 VRRFGIKMVDWTIP----GEAIILGRAKDSKALAKIVKELMGMGFMLFICDEAVEQLLEE 196
Query: 334 LAKKISEYLEFAPGHSTTMV 353
K +Y+ + G+ T +V
Sbjct: 197 NVKLGIDYIAYPLGNFTQIV 216
>pdb|3I04|M Chain M, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|N Chain N, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|O Chain O, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
pdb|3I04|P Chain P, Cyanide-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase From Moorella
Thermoacetica, Cyanide-Bound C-Cluster
Length = 728
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 274 IRRFDIHTVDWDANKDDGSKSLTSGRHTRGKNIAKSIRAVSESMLASHFGEEIMDDLFER 333
+RRF I VDW +++ GR K +AK ++ + +E ++ L E
Sbjct: 140 VRRFGIKMVDWTIP----GEAIILGRAKDSKALAKIVKELMGMGFMLFICDEAVEQLLEE 195
Query: 334 LAKKISEYLEFAPGHSTTMV 353
K +Y+ + G+ T +V
Sbjct: 196 NVKLGIDYIAYPLGNFTQIV 215
>pdb|1OAO|C Chain C, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|1OAO|D Chain D, Nizn[fe4s4] And Nini[fe4s4] Clusters In Closed And Open
Alpha Subunits Of Acetyl-Coa SynthaseCARBON MONOXIDE
Dehydrogenase
pdb|2Z8Y|M Chain M, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|N Chain N, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|O Chain O, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|2Z8Y|P Chain P, Xenon-Bound Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL-Coa Synthase(CodhACS) FROM MOORELLA
Thermoacetica
pdb|3I01|M Chain M, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|N Chain N, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|O Chain O, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster.
pdb|3I01|P Chain P, Native Structure Of Bifunctional Carbon Monoxide
DehydrogenaseACETYL- Coa Synthase From Moorella
Thermoacetica, Water-Bound C-Cluster
Length = 729
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 274 IRRFDIHTVDWDANKDDGSKSLTSGRHTRGKNIAKSIRAVSESMLASHFGEEIMDDLFER 333
+RRF I VDW +++ GR K +AK ++ + +E ++ L E
Sbjct: 141 VRRFGIKMVDWTIP----GEAIILGRAKDSKALAKIVKELMGMGFMLFICDEAVEQLLEE 196
Query: 334 LAKKISEYLEFAPGHSTTMV 353
K +Y+ + G+ T +V
Sbjct: 197 NVKLGIDYIAYPLGNFTQIV 216
>pdb|2FAF|A Chain A, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAF|B Chain B, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAH|A Chain A, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|B Chain B, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|C Chain C, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|D Chain D, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2QZY|A Chain A, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
pdb|2QZY|B Chain B, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
Length = 608
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 94 LNDLPGNDFNTIFKSLPGFYE----KLKEVKGSNFG 125
L LPG D++ +F GF+E +L+E G NFG
Sbjct: 552 LGGLPGVDYSQLFPMEKGFWEEECRQLREYYGENFG 587
>pdb|1W72|H Chain H, Crystal Structure Of Hla-A1:mage-A1 In Complex With Fab-
Hyb3
pdb|1W72|I Chain I, Crystal Structure Of Hla-A1:mage-A1 In Complex With Fab-
Hyb3
Length = 223
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 138 GRLFPNKSLH-------FVHSSYSLHWLSQVP-EGLVSESGVPLNKGHICMAKT 183
G + P +SL F Y++HW+ Q P +GL SG+ N G I A +
Sbjct: 10 GLVQPGRSLRLSCAASGFTFDDYAMHWVRQAPGKGLEWVSGISWNSGSIGYADS 63
>pdb|1ADQ|H Chain H, Crystal Structure Of A Human Igm Rheumatoid Factor Fab In
Complex With Its Autoantigen Igg Fc
Length = 225
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 138 GRLFPNKSLH-------FVHSSYSLHWLSQVP-EGLVSESGVPLNKGHICMAKT 183
G + P +SL F Y++HW+ Q P +GL SG+ N G I A +
Sbjct: 10 GLVQPGRSLRLSCVTSGFTFDDYAMHWVRQSPGKGLEWVSGISWNTGTIIYADS 63
>pdb|1BZ7|B Chain B, Fab Fragment From Murine Ascites
Length = 217
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 148 FVHSSYSLHWLSQVPE------GLVSESGVPLN-----KGHICMAKTSPVGRDFTLFLTS 196
F S++ +HW+ Q PE +S G +N KG +++ +P F +
Sbjct: 27 FTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSL 86
Query: 197 RSEE 200
RSE+
Sbjct: 87 RSED 90
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 44 YCNRLPECLKIADLGCSSGPNTLSL 68
+ N L + KIAD+GC +G TL L
Sbjct: 40 FINELTDDAKIADIGCGTGGQTLFL 64
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase
From Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 44 YCNRLPECLKIADLGCSSGPNTLSL 68
+ N L + KIAD+GC +G TL L
Sbjct: 46 FINELTDDAKIADIGCGTGGQTLFL 70
>pdb|1R24|B Chain B, Fab From Murine Igg3 Kappa
pdb|1R24|D Chain D, Fab From Murine Igg3 Kappa
Length = 217
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 148 FVHSSYSLHWLSQVPE------GLVSESGVPLN-----KGHICMAKTSPVGRDFTLFLTS 196
F S++ +HW+ Q PE +S G +N KG +++ +P F +
Sbjct: 27 FTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSL 86
Query: 197 RSEE 200
RSE+
Sbjct: 87 RSED 90
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 170 GVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELL 229
G P KG + +A++SPV F + + G V++ G RKPG R +LL
Sbjct: 42 GTPQGKG-LDIAESSPVDGFDAKFTGANDYAAIEGADVVIVTAGVPRKPGMSRD---DLL 97
Query: 230 GVTLNDM 236
G+ L M
Sbjct: 98 GINLKVM 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,376,925
Number of Sequences: 62578
Number of extensions: 500890
Number of successful extensions: 1290
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 20
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)