Query 036911
Match_columns 359
No_of_seqs 169 out of 672
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 4.5E-95 1E-99 711.8 36.3 350 1-357 13-384 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 7.3E-86 1.6E-90 642.7 29.4 315 36-359 1-334 (334)
3 PRK01683 trans-aconitate 2-met 99.7 7.2E-15 1.6E-19 138.2 20.2 247 14-359 5-257 (258)
4 PRK14103 trans-aconitate 2-met 99.7 6.7E-15 1.5E-19 138.5 19.2 242 15-358 4-253 (255)
5 PRK10258 biotin biosynthesis p 99.6 1.5E-14 3.2E-19 135.6 19.6 230 15-359 17-251 (251)
6 TIGR02072 BioC biotin biosynth 99.6 4E-13 8.7E-18 123.5 19.4 217 14-338 5-222 (240)
7 COG4106 Tam Trans-aconitate me 99.4 1E-11 2.3E-16 112.5 15.1 220 50-359 30-256 (257)
8 PLN02233 ubiquinone biosynthes 99.3 8.4E-11 1.8E-15 111.4 17.0 167 50-278 73-247 (261)
9 COG2226 UbiE Methylase involve 99.2 4.9E-11 1.1E-15 111.2 10.6 164 50-276 51-221 (238)
10 TIGR02752 MenG_heptapren 2-hep 99.2 9.5E-11 2.1E-15 108.2 12.2 169 51-280 46-219 (231)
11 PLN02336 phosphoethanolamine N 99.2 8.1E-10 1.8E-14 113.0 20.0 192 50-341 266-460 (475)
12 PTZ00098 phosphoethanolamine N 99.2 7.6E-10 1.6E-14 105.0 17.0 195 50-339 52-246 (263)
13 TIGR00740 methyltransferase, p 99.2 5.6E-10 1.2E-14 104.0 15.5 161 50-273 53-221 (239)
14 PRK15068 tRNA mo(5)U34 methylt 99.2 1.3E-10 2.7E-15 113.5 9.7 153 51-280 123-275 (322)
15 PRK08317 hypothetical protein; 99.1 1.4E-08 3E-13 93.0 22.4 220 50-359 19-240 (241)
16 PRK11036 putative S-adenosyl-L 99.1 5.3E-10 1.1E-14 105.3 12.9 163 50-282 44-210 (255)
17 PF01209 Ubie_methyltran: ubiE 99.1 6.8E-11 1.5E-15 110.3 6.1 164 50-278 47-219 (233)
18 PLN02396 hexaprenyldihydroxybe 99.1 9.4E-10 2E-14 107.3 13.9 154 51-280 132-290 (322)
19 PLN02244 tocopherol O-methyltr 99.1 2.6E-09 5.6E-14 105.0 15.6 156 50-278 118-277 (340)
20 PF13489 Methyltransf_23: Meth 99.1 2.3E-10 5E-15 98.6 7.1 138 49-276 21-160 (161)
21 PRK15451 tRNA cmo(5)U34 methyl 99.0 5.3E-09 1.2E-13 98.2 14.6 162 49-273 55-224 (247)
22 PRK11705 cyclopropane fatty ac 99.0 3.7E-08 8.1E-13 98.4 21.2 201 51-355 168-371 (383)
23 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 1E-08 2.2E-13 93.3 15.5 167 50-281 39-212 (223)
24 PF08241 Methyltransf_11: Meth 99.0 7.3E-10 1.6E-14 86.7 6.5 95 55-209 1-95 (95)
25 TIGR00452 methyltransferase, p 99.0 1.7E-09 3.7E-14 105.1 9.9 153 51-280 122-274 (314)
26 PRK00216 ubiE ubiquinone/menaq 99.0 8E-09 1.7E-13 95.0 13.9 167 51-281 52-227 (239)
27 PLN02490 MPBQ/MSBQ methyltrans 99.0 1.1E-08 2.4E-13 100.3 14.8 148 51-284 114-261 (340)
28 smart00828 PKS_MT Methyltransf 99.0 3.8E-09 8.2E-14 97.1 10.2 143 53-282 2-147 (224)
29 PRK06202 hypothetical protein; 98.8 2.3E-07 5E-12 86.0 16.9 168 49-284 59-227 (232)
30 PRK11207 tellurite resistance 98.8 5.1E-08 1.1E-12 88.5 11.5 135 51-278 31-169 (197)
31 PRK11873 arsM arsenite S-adeno 98.8 8.5E-08 1.8E-12 91.0 12.4 151 50-279 77-230 (272)
32 KOG2940 Predicted methyltransf 98.7 3.1E-07 6.8E-12 84.3 14.7 155 50-279 72-227 (325)
33 PF02353 CMAS: Mycolic acid cy 98.7 1.3E-06 2.9E-11 83.4 19.4 152 51-280 63-218 (273)
34 TIGR00477 tehB tellurite resis 98.7 1.5E-07 3.3E-12 85.3 12.0 136 51-279 31-169 (195)
35 PRK11088 rrmA 23S rRNA methylt 98.7 3.4E-07 7.4E-12 87.1 14.9 102 50-216 85-186 (272)
36 KOG1540 Ubiquinone biosynthesi 98.7 1.1E-07 2.5E-12 88.4 11.2 168 50-276 100-278 (296)
37 PRK05785 hypothetical protein; 98.7 6.2E-07 1.3E-11 83.3 15.5 99 51-216 52-150 (226)
38 PLN02336 phosphoethanolamine N 98.7 1.1E-07 2.5E-12 97.2 11.4 135 51-270 38-174 (475)
39 PF08242 Methyltransf_12: Meth 98.7 1E-08 2.2E-13 82.1 2.8 99 55-207 1-99 (99)
40 TIGR02716 C20_methyl_CrtF C-20 98.7 7.4E-07 1.6E-11 86.2 16.1 155 50-276 149-303 (306)
41 PRK12335 tellurite resistance 98.7 1.7E-07 3.8E-12 89.9 11.4 136 51-278 121-258 (287)
42 KOG1541 Predicted protein carb 98.6 2.3E-07 4.9E-12 84.8 10.8 142 15-216 20-165 (270)
43 PF12847 Methyltransf_18: Meth 98.6 3.9E-07 8.4E-12 74.1 10.9 105 51-211 2-111 (112)
44 PF13847 Methyltransf_31: Meth 98.6 1.1E-07 2.5E-12 82.2 6.5 106 50-214 3-113 (152)
45 PRK06922 hypothetical protein; 98.6 2.6E-07 5.6E-12 96.8 10.0 115 51-211 419-537 (677)
46 PRK00121 trmB tRNA (guanine-N( 98.5 3.2E-07 6.9E-12 83.7 8.8 140 24-212 14-157 (202)
47 TIGR01983 UbiG ubiquinone bios 98.5 2.4E-06 5.1E-11 78.3 14.4 157 50-280 45-204 (224)
48 TIGR02021 BchM-ChlM magnesium 98.5 2.3E-06 5.1E-11 78.5 14.3 182 18-281 24-208 (219)
49 TIGR00138 gidB 16S rRNA methyl 98.5 7.8E-07 1.7E-11 79.9 9.3 131 51-253 43-173 (181)
50 TIGR03438 probable methyltrans 98.4 1.6E-06 3.4E-11 83.9 11.2 115 50-216 63-182 (301)
51 TIGR02081 metW methionine bios 98.4 3E-06 6.4E-11 76.5 12.2 150 51-281 14-169 (194)
52 PF08003 Methyltransf_9: Prote 98.4 1.4E-06 3E-11 83.6 10.1 150 51-277 116-265 (315)
53 TIGR03840 TMPT_Se_Te thiopurin 98.4 6.5E-06 1.4E-10 75.9 14.1 145 50-282 34-190 (213)
54 KOG2361 Predicted methyltransf 98.4 2.8E-06 6E-11 78.7 11.3 182 33-280 54-238 (264)
55 PRK05134 bifunctional 3-demeth 98.4 7.5E-06 1.6E-10 75.7 14.0 156 50-279 48-205 (233)
56 PRK11188 rrmJ 23S rRNA methylt 98.4 4.8E-06 1E-10 76.4 12.0 111 51-216 52-170 (209)
57 TIGR00091 tRNA (guanine-N(7)-) 98.3 3.4E-06 7.5E-11 76.3 10.5 112 51-211 17-132 (194)
58 COG2230 Cfa Cyclopropane fatty 98.3 5.4E-05 1.2E-09 72.4 19.0 151 50-280 72-224 (283)
59 PRK13255 thiopurine S-methyltr 98.3 1.4E-05 3E-10 73.9 14.6 150 50-281 37-192 (218)
60 PF03848 TehB: Tellurite resis 98.3 2.2E-06 4.8E-11 77.6 8.8 136 50-278 30-168 (192)
61 PF00891 Methyltransf_2: O-met 98.3 1.3E-05 2.7E-10 74.7 14.2 104 49-216 99-204 (241)
62 TIGR00537 hemK_rel_arch HemK-r 98.3 6.9E-06 1.5E-10 73.1 11.4 123 51-214 20-143 (179)
63 KOG3010 Methyltransferase [Gen 98.3 1.2E-05 2.7E-10 74.5 13.0 103 51-216 34-141 (261)
64 smart00138 MeTrc Methyltransfe 98.3 6E-06 1.3E-10 78.5 11.4 49 134-209 192-240 (264)
65 PRK07580 Mg-protoporphyrin IX 98.3 3.6E-05 7.9E-10 70.6 16.0 32 251-283 187-218 (230)
66 PF13649 Methyltransf_25: Meth 98.3 6.3E-07 1.4E-11 72.1 3.7 99 54-205 1-101 (101)
67 TIGR03587 Pse_Me-ase pseudamin 98.3 6.8E-06 1.5E-10 75.2 10.2 106 14-159 14-119 (204)
68 KOG1270 Methyltransferases [Co 98.2 5.9E-06 1.3E-10 77.5 8.7 150 52-278 91-248 (282)
69 PRK15001 SAM-dependent 23S rib 98.2 5E-06 1.1E-10 82.9 8.4 108 52-211 230-340 (378)
70 PRK08287 cobalt-precorrin-6Y C 98.2 1.2E-05 2.5E-10 72.2 9.7 103 50-216 31-136 (187)
71 PRK04266 fibrillarin; Provisio 98.2 1.8E-05 4E-10 73.5 11.3 105 51-215 73-180 (226)
72 TIGR02469 CbiT precorrin-6Y C5 98.2 1.2E-05 2.5E-10 66.1 8.7 100 51-212 20-123 (124)
73 PRK00107 gidB 16S rRNA methylt 98.1 6.9E-06 1.5E-10 74.2 7.7 99 50-212 45-146 (187)
74 PRK13944 protein-L-isoaspartat 98.1 1.6E-05 3.4E-10 72.7 9.6 99 51-212 73-174 (205)
75 PTZ00146 fibrillarin; Provisio 98.1 6.5E-05 1.4E-09 72.2 14.0 60 18-98 107-166 (293)
76 PLN02585 magnesium protoporphy 98.1 0.00016 3.5E-09 70.5 16.2 27 254-281 275-301 (315)
77 PRK09489 rsmC 16S ribosomal RN 98.1 8.1E-06 1.8E-10 80.5 6.8 107 51-211 197-303 (342)
78 PF05401 NodS: Nodulation prot 98.0 2.5E-05 5.4E-10 70.7 9.3 105 49-212 42-147 (201)
79 PF05175 MTS: Methyltransferas 98.0 1.7E-05 3.6E-10 70.3 7.9 108 50-212 31-141 (170)
80 PF05148 Methyltransf_8: Hypot 98.0 7.9E-05 1.7E-09 68.1 12.0 116 48-279 70-185 (219)
81 PRK14121 tRNA (guanine-N(7)-)- 98.0 1.5E-05 3.2E-10 79.6 7.9 110 51-211 123-235 (390)
82 PRK14967 putative methyltransf 98.0 6E-05 1.3E-09 69.6 11.3 168 51-270 37-204 (223)
83 PLN02232 ubiquinone biosynthes 98.0 2.4E-05 5.3E-10 68.6 7.6 109 134-277 33-145 (160)
84 TIGR00080 pimt protein-L-isoas 97.9 6.2E-05 1.3E-09 69.1 10.0 99 50-212 77-178 (215)
85 COG2227 UbiG 2-polyprenyl-3-me 97.9 1.7E-05 3.7E-10 73.7 5.9 151 51-279 60-215 (243)
86 TIGR03533 L3_gln_methyl protei 97.9 8.8E-05 1.9E-09 71.3 11.0 123 51-212 122-252 (284)
87 PRK13942 protein-L-isoaspartat 97.9 6.1E-05 1.3E-09 69.2 9.5 81 50-157 76-157 (212)
88 PHA03411 putative methyltransf 97.9 0.00011 2.4E-09 70.1 11.4 120 51-214 65-186 (279)
89 TIGR03534 RF_mod_PrmC protein- 97.9 8.4E-05 1.8E-09 69.1 9.5 125 50-211 87-217 (251)
90 TIGR00536 hemK_fam HemK family 97.8 0.00015 3.2E-09 69.6 10.9 122 52-212 116-245 (284)
91 PRK11805 N5-glutamine S-adenos 97.8 0.00019 4.1E-09 69.8 11.6 121 52-211 135-263 (307)
92 PF06080 DUF938: Protein of un 97.8 0.00042 9.1E-09 63.3 12.8 155 53-275 28-188 (204)
93 PRK00312 pcm protein-L-isoaspa 97.8 0.00014 2.9E-09 66.5 9.5 96 50-212 78-176 (212)
94 PF05891 Methyltransf_PK: AdoM 97.8 0.00011 2.3E-09 67.7 8.6 143 50-280 55-202 (218)
95 PRK00517 prmA ribosomal protei 97.8 0.00029 6.2E-09 66.3 11.6 21 193-213 195-215 (250)
96 KOG4300 Predicted methyltransf 97.8 0.00018 3.8E-09 65.6 9.5 109 51-216 77-187 (252)
97 TIGR00438 rrmJ cell division p 97.7 0.00023 4.9E-09 63.9 10.1 107 50-215 32-150 (188)
98 cd02440 AdoMet_MTases S-adenos 97.7 0.00019 4.1E-09 55.3 8.3 102 53-210 1-103 (107)
99 TIGR00406 prmA ribosomal prote 97.7 0.00016 3.5E-09 69.5 8.9 102 51-216 160-264 (288)
100 PRK14966 unknown domain/N5-glu 97.7 0.00024 5.2E-09 71.6 10.0 123 51-211 252-381 (423)
101 PF07021 MetW: Methionine bios 97.7 0.00016 3.6E-09 65.2 7.9 106 133-284 61-172 (193)
102 PRK00377 cbiT cobalt-precorrin 97.6 0.00023 4.9E-09 64.5 8.5 102 50-211 40-145 (198)
103 PF03141 Methyltransf_29: Puta 97.6 0.0001 2.2E-09 75.0 6.5 72 138-238 174-246 (506)
104 PRK09328 N5-glutamine S-adenos 97.6 0.00028 6.1E-09 66.7 9.2 126 50-211 108-238 (275)
105 COG4123 Predicted O-methyltran 97.6 0.0002 4.4E-09 67.3 7.3 126 49-211 43-170 (248)
106 PLN03075 nicotianamine synthas 97.5 0.0013 2.9E-08 63.4 12.4 111 50-211 123-233 (296)
107 PRK01544 bifunctional N5-gluta 97.5 0.00029 6.4E-09 73.0 8.5 128 51-211 139-269 (506)
108 KOG3178 Hydroxyindole-O-methyl 97.5 0.0016 3.4E-08 63.8 12.6 188 9-279 138-330 (342)
109 PRK14968 putative methyltransf 97.5 0.0016 3.5E-08 57.5 11.5 125 51-212 24-149 (188)
110 KOG3045 Predicted RNA methylas 97.4 0.00061 1.3E-08 64.0 8.1 88 48-212 178-265 (325)
111 PF13659 Methyltransf_26: Meth 97.4 0.00083 1.8E-08 54.8 8.1 110 52-212 2-116 (117)
112 PRK13256 thiopurine S-methyltr 97.4 0.0017 3.6E-08 60.5 10.5 165 33-279 29-197 (226)
113 PRK00811 spermidine synthase; 97.3 0.001 2.2E-08 63.9 9.0 114 49-211 75-191 (283)
114 TIGR03704 PrmC_rel_meth putati 97.3 0.0023 5E-08 60.4 10.5 123 51-212 87-217 (251)
115 COG2813 RsmC 16S RNA G1207 met 97.2 0.0017 3.8E-08 62.4 8.9 113 51-216 159-271 (300)
116 TIGR01177 conserved hypothetic 97.2 0.0025 5.4E-08 62.4 10.3 117 51-216 183-299 (329)
117 TIGR00563 rsmB ribosomal RNA s 97.1 0.0024 5.3E-08 64.7 10.0 122 51-216 239-373 (426)
118 COG2264 PrmA Ribosomal protein 97.1 0.0032 7E-08 60.8 10.0 102 50-212 162-264 (300)
119 COG2890 HemK Methylase of poly 97.1 0.0016 3.4E-08 62.6 7.4 117 53-211 113-238 (280)
120 PRK14903 16S rRNA methyltransf 97.1 0.0029 6.4E-08 64.3 9.7 124 51-216 238-371 (431)
121 COG4976 Predicted methyltransf 97.1 0.0019 4.2E-08 59.8 7.5 87 141-284 184-270 (287)
122 KOG2904 Predicted methyltransf 97.0 0.0092 2E-07 56.7 11.9 129 51-216 149-290 (328)
123 PRK04457 spermidine synthase; 97.0 0.0028 6.1E-08 60.2 8.5 115 49-216 65-182 (262)
124 PRK10901 16S rRNA methyltransf 96.9 0.0041 8.8E-08 63.2 9.5 118 51-214 245-375 (427)
125 PF03291 Pox_MCEL: mRNA cappin 96.9 0.0011 2.5E-08 65.0 4.9 50 140-214 138-189 (331)
126 PF06325 PrmA: Ribosomal prote 96.9 0.0092 2E-07 57.7 11.0 101 51-214 162-262 (295)
127 PF02390 Methyltransf_4: Putat 96.9 0.0022 4.8E-08 58.3 6.4 114 52-211 19-133 (195)
128 PF05724 TPMT: Thiopurine S-me 96.8 0.047 1E-06 50.5 14.7 164 32-281 22-192 (218)
129 PRK13943 protein-L-isoaspartat 96.8 0.0049 1.1E-07 60.4 8.5 77 51-156 81-160 (322)
130 KOG3191 Predicted N6-DNA-methy 96.8 0.031 6.8E-07 50.2 12.7 144 32-216 28-173 (209)
131 PRK07402 precorrin-6B methylas 96.8 0.013 2.7E-07 52.9 10.5 25 189-213 120-144 (196)
132 PRK01544 bifunctional N5-gluta 96.8 0.0052 1.1E-07 63.8 8.9 139 24-211 324-462 (506)
133 PRK14904 16S rRNA methyltransf 96.8 0.0063 1.4E-07 62.1 9.4 120 51-216 251-382 (445)
134 PRK14902 16S rRNA methyltransf 96.8 0.0064 1.4E-07 62.0 9.4 122 51-214 251-382 (444)
135 TIGR03439 methyl_EasF probable 96.8 0.014 3.1E-07 57.1 11.4 136 35-216 62-202 (319)
136 PRK01581 speE spermidine synth 96.7 0.011 2.3E-07 58.8 9.9 121 48-211 148-268 (374)
137 COG2242 CobL Precorrin-6B meth 96.7 0.0088 1.9E-07 53.8 8.3 120 34-216 16-140 (187)
138 TIGR00417 speE spermidine synt 96.6 0.0043 9.4E-08 59.1 6.7 113 49-210 71-185 (270)
139 PF01135 PCMT: Protein-L-isoas 96.6 0.0043 9.3E-08 57.1 6.2 99 51-213 73-174 (209)
140 PHA03412 putative methyltransf 96.6 0.0092 2E-07 55.9 8.4 72 51-152 50-121 (241)
141 PRK14901 16S rRNA methyltransf 96.6 0.02 4.3E-07 58.3 11.5 123 51-214 253-387 (434)
142 PLN02366 spermidine synthase 96.6 0.014 3.1E-07 56.7 9.8 115 49-211 90-206 (308)
143 COG2518 Pcm Protein-L-isoaspar 96.5 0.014 3E-07 53.6 8.7 20 50-69 72-91 (209)
144 PF12147 Methyltransf_20: Puta 96.5 0.13 2.9E-06 49.4 15.4 170 32-273 119-292 (311)
145 KOG1331 Predicted methyltransf 96.5 0.0041 8.8E-08 59.3 5.0 132 17-216 17-148 (293)
146 PRK03612 spermidine synthase; 96.4 0.012 2.5E-07 61.5 8.7 162 49-267 296-457 (521)
147 smart00650 rADc Ribosomal RNA 96.4 0.0035 7.6E-08 55.2 4.1 76 51-157 14-89 (169)
148 KOG1271 Methyltransferases [Ge 96.2 0.1 2.2E-06 47.0 12.3 19 51-69 68-86 (227)
149 PLN02781 Probable caffeoyl-CoA 96.2 0.015 3.3E-07 54.2 7.3 35 50-98 68-102 (234)
150 COG0220 Predicted S-adenosylme 96.1 0.022 4.7E-07 53.1 7.7 114 52-211 50-164 (227)
151 PLN02672 methionine S-methyltr 96.1 0.017 3.6E-07 64.7 8.0 131 52-216 120-283 (1082)
152 TIGR00446 nop2p NOL1/NOP2/sun 96.0 0.02 4.4E-07 54.3 7.1 28 189-216 177-204 (264)
153 PF11968 DUF3321: Putative met 95.7 0.069 1.5E-06 49.3 9.2 163 5-279 4-181 (219)
154 KOG1499 Protein arginine N-met 95.6 0.022 4.8E-07 55.8 5.7 104 51-208 61-164 (346)
155 COG2519 GCD14 tRNA(1-methylade 95.5 0.068 1.5E-06 50.4 8.5 124 51-246 95-218 (256)
156 PF05185 PRMT5: PRMT5 arginine 95.5 0.041 8.8E-07 56.4 7.6 108 51-208 187-294 (448)
157 PF10294 Methyltransf_16: Puta 95.5 0.036 7.8E-07 49.3 6.3 115 50-216 45-161 (173)
158 KOG1500 Protein arginine N-met 95.3 0.081 1.8E-06 51.8 8.5 105 51-211 178-282 (517)
159 PF04672 Methyltransf_19: S-ad 95.3 0.7 1.5E-05 44.1 14.6 179 32-286 52-244 (267)
160 PRK11783 rlmL 23S rRNA m(2)G24 95.3 0.08 1.7E-06 57.2 9.3 113 51-211 539-656 (702)
161 PRK13168 rumA 23S rRNA m(5)U19 95.1 0.11 2.5E-06 52.9 9.3 19 51-69 298-316 (443)
162 PF07942 N2227: N2227-like pro 95.0 0.5 1.1E-05 45.2 12.7 98 129-283 146-247 (270)
163 PF08704 GCD14: tRNA methyltra 94.9 0.17 3.8E-06 47.7 9.4 100 51-212 41-147 (247)
164 PRK00274 ksgA 16S ribosomal RN 94.6 0.013 2.9E-07 55.8 1.0 56 5-70 7-62 (272)
165 PF01728 FtsJ: FtsJ-like methy 94.6 0.11 2.4E-06 46.0 6.8 37 50-100 23-59 (181)
166 PRK14896 ksgA 16S ribosomal RN 94.4 0.071 1.5E-06 50.4 5.6 74 51-157 30-103 (258)
167 KOG2899 Predicted methyltransf 94.3 0.35 7.6E-06 45.5 9.6 25 187-211 185-209 (288)
168 KOG1975 mRNA cap methyltransfe 94.3 0.072 1.6E-06 51.9 5.3 116 51-215 118-241 (389)
169 COG1352 CheR Methylase of chem 94.2 0.52 1.1E-05 45.0 10.9 128 50-216 96-243 (268)
170 TIGR00755 ksgA dimethyladenosi 94.1 0.12 2.7E-06 48.5 6.5 20 50-69 29-48 (253)
171 PF01596 Methyltransf_3: O-met 94.1 0.059 1.3E-06 49.4 4.1 109 50-212 45-156 (205)
172 PRK15128 23S rRNA m(5)C1962 me 94.0 0.35 7.5E-06 48.8 9.8 111 51-211 221-339 (396)
173 PF01739 CheR: CheR methyltran 93.8 0.19 4.1E-06 45.8 6.8 43 140-209 131-173 (196)
174 COG4122 Predicted O-methyltran 93.4 0.24 5.3E-06 45.9 6.8 106 50-214 59-169 (219)
175 PLN02476 O-methyltransferase 93.3 0.2 4.3E-06 48.1 6.4 35 50-98 118-152 (278)
176 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.1 0.14 3E-06 48.7 4.8 82 144-278 157-238 (256)
177 PF02384 N6_Mtase: N-6 DNA Met 93.1 0.49 1.1E-05 45.6 8.8 135 50-212 46-184 (311)
178 PLN02589 caffeoyl-CoA O-methyl 93.0 0.21 4.5E-06 47.2 5.9 35 50-98 79-113 (247)
179 PF05219 DREV: DREV methyltran 92.9 0.59 1.3E-05 44.4 8.6 96 50-212 94-189 (265)
180 PRK10611 chemotaxis methyltran 92.5 0.22 4.8E-06 48.0 5.4 44 143-216 221-264 (287)
181 PLN02823 spermine synthase 92.3 1.6 3.5E-05 43.0 11.3 21 49-69 102-122 (336)
182 COG0500 SmtA SAM-dependent met 92.1 1.2 2.6E-05 35.2 8.6 48 139-216 112-160 (257)
183 PRK11727 23S rRNA mA1618 methy 91.9 0.43 9.4E-06 46.8 6.7 34 50-98 114-147 (321)
184 PRK04338 N(2),N(2)-dimethylgua 91.1 1.4 3E-05 44.3 9.5 63 12-98 28-90 (382)
185 PTZ00338 dimethyladenosine tra 90.6 0.29 6.2E-06 47.4 4.0 19 51-69 37-55 (294)
186 PF13679 Methyltransf_32: Meth 90.1 0.47 1E-05 40.5 4.5 55 30-97 7-61 (141)
187 KOG2798 Putative trehalase [Ca 90.0 4.7 0.0001 39.4 11.6 67 191-284 276-342 (369)
188 PRK03522 rumB 23S rRNA methylu 89.9 0.45 9.8E-06 46.3 4.8 31 51-98 174-204 (315)
189 TIGR00478 tly hemolysin TlyA f 89.5 0.42 9E-06 44.6 4.0 35 50-100 75-109 (228)
190 COG2263 Predicted RNA methylas 88.2 0.29 6.3E-06 44.3 1.9 19 51-69 46-64 (198)
191 PRK11933 yebU rRNA (cytosine-C 88.0 1.4 3.1E-05 45.4 7.1 35 51-99 114-148 (470)
192 PRK04148 hypothetical protein; 85.2 2.9 6.4E-05 35.8 6.4 19 51-69 17-36 (134)
193 PF09243 Rsm22: Mitochondrial 84.1 15 0.00032 35.1 11.4 17 50-66 33-49 (274)
194 PRK10909 rsmD 16S rRNA m(2)G96 83.8 1.1 2.5E-05 40.7 3.5 19 51-69 54-72 (199)
195 KOG1269 SAM-dependent methyltr 82.2 3.1 6.7E-05 41.5 6.1 56 132-216 165-220 (364)
196 PF02527 GidB: rRNA small subu 81.7 12 0.00025 33.8 9.1 100 53-214 51-150 (184)
197 KOG1661 Protein-L-isoaspartate 80.5 4.5 9.9E-05 37.4 6.0 19 51-69 83-101 (237)
198 TIGR02085 meth_trns_rumB 23S r 79.9 2.3 5E-05 42.4 4.4 18 52-69 235-252 (374)
199 COG0030 KsgA Dimethyladenosine 77.2 4.9 0.00011 38.2 5.5 52 51-106 31-94 (259)
200 TIGR00479 rumA 23S rRNA (uraci 77.1 2.9 6.2E-05 42.4 4.2 19 51-69 293-311 (431)
201 TIGR00095 RNA methyltransferas 75.6 3.6 7.8E-05 37.0 4.0 19 51-69 50-68 (189)
202 PRK01747 mnmC bifunctional tRN 75.0 11 0.00024 40.4 8.2 139 50-210 57-205 (662)
203 PF03514 GRAS: GRAS domain fam 73.5 74 0.0016 31.8 13.1 43 50-100 110-152 (374)
204 PRK00536 speE spermidine synth 73.4 18 0.00039 34.5 8.2 101 48-211 70-171 (262)
205 COG5459 Predicted rRNA methyla 72.9 46 0.001 33.3 10.9 66 193-268 207-272 (484)
206 PRK05031 tRNA (uracil-5-)-meth 72.5 5.3 0.00011 39.7 4.6 18 52-69 208-225 (362)
207 PF02475 Met_10: Met-10+ like- 72.4 6.8 0.00015 35.8 4.9 32 51-97 102-133 (200)
208 COG1189 Predicted rRNA methyla 71.9 4.1 9E-05 38.2 3.4 36 49-100 78-113 (245)
209 PRK11524 putative methyltransf 71.7 6.6 0.00014 37.6 4.9 21 191-211 60-80 (284)
210 TIGR02143 trmA_only tRNA (urac 71.5 5.5 0.00012 39.5 4.5 18 52-69 199-216 (353)
211 KOG3420 Predicted RNA methylas 70.5 2.9 6.4E-05 36.5 2.0 19 50-68 48-66 (185)
212 PF07757 AdoMet_MTase: Predict 69.5 2.8 6.1E-05 34.6 1.6 20 50-69 58-77 (112)
213 PF03141 Methyltransf_29: Puta 67.8 16 0.00036 37.8 7.0 130 11-209 332-465 (506)
214 COG4627 Uncharacterized protei 65.9 1.1 2.4E-05 39.5 -1.6 54 134-214 36-89 (185)
215 PRK13699 putative methylase; P 65.0 12 0.00026 34.7 5.1 20 191-210 52-71 (227)
216 PF01564 Spermine_synth: Sperm 63.5 38 0.00082 31.8 8.2 119 49-214 75-194 (246)
217 PF08123 DOT1: Histone methyla 62.4 12 0.00027 34.2 4.6 18 51-68 43-60 (205)
218 PRK00050 16S rRNA m(4)C1402 me 62.1 12 0.00025 36.4 4.5 33 51-97 20-52 (296)
219 TIGR01444 fkbM_fam methyltrans 61.3 5.2 0.00011 33.4 1.7 17 53-69 1-17 (143)
220 KOG3115 Methyltransferase-like 61.1 2.3 5E-05 39.2 -0.5 19 51-69 61-79 (249)
221 KOG2915 tRNA(1-methyladenosine 61.0 69 0.0015 31.0 9.3 40 198-248 196-235 (314)
222 PF07091 FmrO: Ribosomal RNA m 59.7 9.1 0.0002 36.2 3.2 35 49-98 104-138 (251)
223 PRK11760 putative 23S rRNA C24 57.7 12 0.00025 37.2 3.7 20 50-69 211-230 (357)
224 PF06859 Bin3: Bicoid-interact 55.1 8.7 0.00019 31.8 2.0 44 146-212 2-45 (110)
225 COG0742 N6-adenine-specific me 54.4 1E+02 0.0023 27.9 9.0 19 51-69 44-62 (187)
226 TIGR02987 met_A_Alw26 type II 54.2 17 0.00036 37.9 4.5 42 50-98 31-72 (524)
227 KOG4589 Cell division protein 53.9 26 0.00056 32.1 4.9 34 51-98 70-103 (232)
228 PF10672 Methyltrans_SAM: S-ad 52.3 19 0.00041 34.8 4.1 112 51-212 124-239 (286)
229 PF01269 Fibrillarin: Fibrilla 50.7 1.4E+02 0.003 28.0 9.3 22 51-73 74-95 (229)
230 PF09445 Methyltransf_15: RNA 47.1 12 0.00027 33.0 1.8 17 53-69 2-18 (163)
231 COG0144 Sun tRNA and rRNA cyto 46.8 1.1E+02 0.0025 30.2 8.9 132 51-216 157-293 (355)
232 PF02636 Methyltransf_28: Puta 43.3 33 0.00072 32.0 4.2 22 51-72 19-40 (252)
233 PF00398 RrnaAD: Ribosomal RNA 43.1 43 0.00092 31.5 5.0 21 50-70 30-50 (262)
234 PRK00050 16S rRNA m(4)C1402 me 42.0 51 0.0011 32.0 5.3 30 187-216 212-241 (296)
235 KOG2920 Predicted methyltransf 40.2 23 0.0005 34.1 2.6 35 31-69 100-135 (282)
236 COG2521 Predicted archaeal met 39.1 24 0.00052 33.4 2.5 59 131-215 189-249 (287)
237 KOG0820 Ribosomal RNA adenine 36.9 1.2E+02 0.0025 29.5 6.7 51 50-101 58-120 (315)
238 COG3963 Phospholipid N-methylt 36.8 43 0.00093 30.1 3.6 24 193-216 138-161 (194)
239 KOG1501 Arginine N-methyltrans 34.9 29 0.00063 35.7 2.5 23 49-71 65-87 (636)
240 PF14904 FAM86: Family of unkn 34.9 41 0.00088 27.3 2.9 31 307-337 67-99 (100)
241 PF02375 JmjN: jmjN domain; I 34.7 14 0.0003 24.0 0.1 15 253-267 1-15 (34)
242 COG4076 Predicted RNA methylas 33.7 51 0.0011 30.2 3.6 20 52-71 34-53 (252)
243 COG0357 GidB Predicted S-adeno 33.2 94 0.002 28.7 5.4 31 51-96 68-98 (215)
244 PF01170 UPF0020: Putative RNA 33.0 3.2E+02 0.0069 24.0 8.7 19 133-151 94-112 (179)
245 COG5124 Protein predicted to b 32.2 29 0.00064 31.1 1.8 37 223-259 39-75 (209)
246 TIGR00308 TRM1 tRNA(guanine-26 31.7 56 0.0012 32.8 3.9 65 14-98 14-78 (374)
247 PF02268 TFIIA_gamma_N: Transc 31.6 43 0.00092 23.6 2.2 23 224-246 10-32 (49)
248 KOG1663 O-methyltransferase [S 31.5 1.7E+02 0.0037 27.5 6.7 36 50-99 73-108 (237)
249 PF03962 Mnd1: Mnd1 family; I 30.1 32 0.00069 31.1 1.7 35 227-261 30-64 (188)
250 cd08788 CARD_NOD2_2_CARD15 Cas 30.1 49 0.0011 25.8 2.5 42 225-267 12-53 (81)
251 PF03269 DUF268: Caenorhabditi 29.9 59 0.0013 29.0 3.2 29 187-216 88-116 (177)
252 PF04816 DUF633: Family of unk 29.7 31 0.00067 31.6 1.6 24 257-281 103-126 (205)
253 PHA00457 inhibitor of host bac 29.6 49 0.0011 24.2 2.2 29 249-278 26-58 (63)
254 PF01555 N6_N4_Mtase: DNA meth 29.1 78 0.0017 28.0 4.1 24 191-214 36-59 (231)
255 COG1565 Uncharacterized conser 28.8 83 0.0018 31.5 4.5 24 48-71 75-98 (370)
256 COG0293 FtsJ 23S rRNA methylas 28.3 1.1E+02 0.0024 28.1 5.0 51 16-72 14-67 (205)
257 COG0279 GmhA Phosphoheptose is 28.3 3.3E+02 0.0071 24.4 7.6 62 16-81 7-68 (176)
258 PF12242 Eno-Rase_NADH_b: NAD( 27.9 75 0.0016 24.6 3.1 23 49-74 37-59 (78)
259 smart00400 ZnF_CHCC zinc finge 27.4 54 0.0012 23.1 2.2 22 51-72 21-42 (55)
260 PF11899 DUF3419: Protein of u 27.4 96 0.0021 31.2 4.8 57 133-216 281-339 (380)
261 PF05958 tRNA_U5-meth_tr: tRNA 27.3 77 0.0017 31.4 4.0 17 53-69 199-215 (352)
262 COG0421 SpeE Spermidine syntha 26.7 5.8E+02 0.013 24.5 9.8 19 192-210 171-189 (282)
263 PF05206 TRM13: Methyltransfer 26.6 1.5E+02 0.0034 28.1 5.8 42 49-100 17-58 (259)
264 KOG4068 Uncharacterized conser 25.2 70 0.0015 28.2 2.8 56 226-282 68-127 (174)
265 KOG4058 Uncharacterized conser 24.9 97 0.0021 27.4 3.7 62 7-68 24-90 (199)
266 COG1041 Predicted DNA modifica 24.6 6E+02 0.013 25.4 9.6 131 32-212 181-311 (347)
267 TIGR00006 S-adenosyl-methyltra 24.6 77 0.0017 30.9 3.4 30 187-216 216-245 (305)
268 COG1092 Predicted SAM-dependen 24.5 3.8E+02 0.0083 27.1 8.4 117 51-214 218-339 (393)
269 PRK11783 rlmL 23S rRNA m(2)G24 24.4 5.2E+02 0.011 28.2 10.0 19 51-69 191-209 (702)
270 PF09851 SHOCT: Short C-termin 24.3 54 0.0012 20.5 1.5 17 232-248 7-23 (31)
271 COG0275 Predicted S-adenosylme 23.7 81 0.0018 30.8 3.3 30 187-216 220-249 (314)
272 PHA03297 envelope glycoprotein 23.6 30 0.00065 30.1 0.3 50 49-98 38-93 (185)
273 COG1942 Uncharacterized protei 22.4 2.1E+02 0.0046 21.5 4.7 44 58-101 7-51 (69)
274 smart00545 JmjN Small domain f 21.6 52 0.0011 22.3 1.1 16 252-267 2-17 (42)
275 COG2231 Uncharacterized protei 20.4 1.5E+02 0.0031 27.5 4.0 39 225-270 44-82 (215)
276 KOG3987 Uncharacterized conser 20.3 1.4E+02 0.0031 27.8 4.0 20 50-69 112-131 (288)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=4.5e-95 Score=711.76 Aligned_cols=350 Identities=33% Similarity=0.589 Sum_probs=317.3
Q ss_pred CcccceeeccCCCCcchHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCC-CcceEEeecCCCCcchHHHHHHHHHHHHHH
Q 036911 1 MEVQQVLCMNGGRGDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLP-ECLKIADLGCSSGPNTLSLLWEIIDTIDGT 79 (359)
Q Consensus 1 ~~~~~~l~M~gG~g~~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~-~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~ 79 (359)
|+++++|||+||+|++||++||.+|+.++..++|+|+++|++++....+ ++++|||||||+|+||+.+++.||++|+++
T Consensus 13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~ 92 (386)
T PLN02668 13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKR 92 (386)
T ss_pred ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999988654334 689999999999999999999999999999
Q ss_pred hhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHH--Hhh--CCCCCCeEEecccCCcccCCCCCCceeEEEecccc
Q 036911 80 CKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLK--EVK--GSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSL 155 (359)
Q Consensus 80 ~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~--~~~--~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~al 155 (359)
|.+.+.++|++||||||||+||||+||++|+.+...+. ... ....++||++|||||||+||||++|+||+||++||
T Consensus 93 ~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl 172 (386)
T PLN02668 93 YESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSL 172 (386)
T ss_pred hhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccc
Confidence 98877778899999999999999999999998765431 110 01113699999999999999999999999999999
Q ss_pred cccccCCCCccccCCCCCCCcceeecCCCCc---------cccHHHHHHHHHHhhccCceEEEEEecCCCCCCCCc----
Q 036911 156 HWLSQVPEGLVSESGVPLNKGHICMAKTSPV---------GRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPR---- 222 (359)
Q Consensus 156 hWls~~p~~~~~~~~~~~n~g~i~~~~~~~~---------~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~---- 222 (359)
||||++|+.+.+..++.||||+||+.++++. ++||..||++||+||+|||+|+++++||++ .+++
T Consensus 173 HWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~--~~~~~~~~ 250 (386)
T PLN02668 173 HWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTS--VDPTDQGG 250 (386)
T ss_pred eecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCC--CCcccCCc
Confidence 9999999999999999999999999999964 899999999999999999999999999987 5554
Q ss_pred -hhHHHH-HHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEEeecCCCCCCCCCcccccccc
Q 036911 223 -CTGWEL-LGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDWDANKDDGSKSLTSGRH 300 (359)
Q Consensus 223 -~~~~~~-l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~~~~~~~~~~~~~~d~~ 300 (359)
+.+|+. ++++|++||.||+|++||+|+||+|+|+||++|++++|+++|+|+|+++|.++..|+. ..+..+ |..
T Consensus 251 ~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~-~~~~~~----d~~ 325 (386)
T PLN02668 251 AGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPL-VVNEPD----DAA 325 (386)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcc-cccCcc----cHH
Confidence 456776 9999999999999999999999999999999999999999999999999999999886 332221 556
Q ss_pred cchhHHHHHHHHHhHHHHHhhcChhHHHHHHHHHHHHHHHHHhh--CCCCEEEEEEEEe
Q 036911 301 TRGKNIAKSIRAVSESMLASHFGEEIMDDLFERLAKKISEYLEF--APGHSTTMVISMT 357 (359)
Q Consensus 301 ~~~~~~~~~~Ra~~ep~l~~h~~~~i~delf~r~~~~~~~~~~~--~~~~~~~~~~~l~ 357 (359)
..++.+++++||++||+|.+|||++|+|+||+||+++++++++. ++.++.+++++|+
T Consensus 326 ~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~~~sL~ 384 (386)
T PLN02668 326 EVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELLEKLQFFHIVASLS 384 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEe
Confidence 78899999999999999999999999999999999999999988 8999999999986
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=7.3e-86 Score=642.72 Aligned_cols=315 Identities=51% Similarity=0.908 Sum_probs=263.2
Q ss_pred HHHHHHHhhhc-CCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhcc-CCCCcceEEecCCCCCchhhhhhcccchH
Q 036911 36 LQDSIKKLYCN-RLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLN-REAPMYQVFLNDLPGNDFNTIFKSLPGFY 113 (359)
Q Consensus 36 l~~ai~~~~~~-~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~-~~~p~~~v~~nDLp~NDFn~lF~~l~~~~ 113 (359)
|++||.+++.. ..+++++|||||||+|+||+.+++.||++|+++|.+.+ +++|++||||||||+||||+||++|+.+.
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~ 80 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ 80 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence 57888888753 46789999999999999999999999999999998776 67889999999999999999999999887
Q ss_pred HHHHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCc-------
Q 036911 114 EKLKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPV------- 186 (359)
Q Consensus 114 ~~~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~------- 186 (359)
.++.. .++||++|||||||+||||++|+||+||++||||||++|+.+.++.+++||||+||+..++++
T Consensus 81 ~~~~~-----~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~ 155 (334)
T PF03492_consen 81 QSLKK-----FRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYA 155 (334)
T ss_dssp HHHHH-----TTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHH
T ss_pred hccCC-----CceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHH
Confidence 76554 268999999999999999999999999999999999999999999999999999999977765
Q ss_pred ---cccHHHHHHHHHHhhccCceEEEEEecCCCCCCCCc----hhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCH
Q 036911 187 ---GRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPR----CTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSP 259 (359)
Q Consensus 187 ---~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~----~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~ 259 (359)
++||..||++||+||+|||+|+++++|+++ .++. +.+|++|+++|+|||.||+|++|++|+||+|+|+||+
T Consensus 156 ~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~--~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~ 233 (334)
T PF03492_consen 156 KQFQKDFSSFLKARAEELVPGGRMVLTFLGRDE--EDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSP 233 (334)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-ST--SSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---H
T ss_pred HHHHHHHHHHHHHhhheeccCcEEEEEEeeccc--cccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCH
Confidence 899999999999999999999999999998 5554 6799999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEeEEEEEeecCCCCCCCCCcccccccccchhHHHHHHHHHhHHHHHhhcChhHHHHHHHHHHHHHH
Q 036911 260 EEVRHVIQTEGSFNIRRFDIHTVDWDANKDDGSKSLTSGRHTRGKNIAKSIRAVSESMLASHFGEEIMDDLFERLAKKIS 339 (359)
Q Consensus 260 ~E~~~~i~~~Gsf~i~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~Ra~~ep~l~~h~~~~i~delf~r~~~~~~ 339 (359)
+|++++|+++|+|+|+++|.+..+|.. .... .....|..++|+.+++++||++||+|++|||++++|+||+||+++++
T Consensus 234 eEv~~~I~~~gsF~I~~le~~~~~~~~-~~~~-~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~ 311 (334)
T PF03492_consen 234 EEVRAIIEEEGSFEIEKLELFEQPWWS-VPDD-ESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVA 311 (334)
T ss_dssp HHHHHHHHHHTSEEEEEEEEEEEETCC-TCTT-T-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEEEEEeecccc-cchh-hhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 999999999999999999999966543 2211 11223567899999999999999999999999999999999999999
Q ss_pred HHHhhCC---CCEEEEEEEEeeC
Q 036911 340 EYLEFAP---GHSTTMVISMTKS 359 (359)
Q Consensus 340 ~~~~~~~---~~~~~~~~~l~r~ 359 (359)
++++.+. +++++++++|+||
T Consensus 312 ~~~~~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 312 EHLEKEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HHHHHTHTT-BEEEEEEEEEEE-
T ss_pred HHHHHhhccCCCcEEEEEEEeeC
Confidence 9998766 8999999999998
No 3
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=7.2e-15 Score=138.19 Aligned_cols=247 Identities=14% Similarity=0.175 Sum_probs=156.2
Q ss_pred CcchHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEE
Q 036911 14 GDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVF 93 (359)
Q Consensus 14 g~~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~ 93 (359)
-+..|++++..|.+....++..+. .....+|+|+|||+|..+..+++.. |..+|+
T Consensus 5 ~~~~Y~~~~~~~~~~~~~ll~~~~----------~~~~~~vLDiGcG~G~~~~~la~~~---------------~~~~v~ 59 (258)
T PRK01683 5 NPSLYLKFEDERTRPARDLLARVP----------LENPRYVVDLGCGPGNSTELLVERW---------------PAARIT 59 (258)
T ss_pred CHHHHHHHHHHhhcHHHHHHhhCC----------CcCCCEEEEEcccCCHHHHHHHHHC---------------CCCEEE
Confidence 356899999988777765543321 1246799999999999988776322 457899
Q ss_pred ecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCC
Q 036911 94 LNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPL 173 (359)
Q Consensus 94 ~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~ 173 (359)
..|+.. ......++... +..|+. +++. .+.+++++|+++|+.++||+.+.+
T Consensus 60 gvD~s~-----------~~i~~a~~~~~---~~~~~~---~d~~-~~~~~~~fD~v~~~~~l~~~~d~~----------- 110 (258)
T PRK01683 60 GIDSSP-----------AMLAEARSRLP---DCQFVE---ADIA-SWQPPQALDLIFANASLQWLPDHL----------- 110 (258)
T ss_pred EEECCH-----------HHHHHHHHhCC---CCeEEE---Cchh-ccCCCCCccEEEEccChhhCCCHH-----------
Confidence 999752 11121211110 122333 4553 345678999999999999976532
Q ss_pred CCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcC
Q 036911 174 NKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLP 253 (359)
Q Consensus 174 n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P 253 (359)
.+|+...+.|+|||.+++++.+... .+ .+ ..++++.....+...-...-..+
T Consensus 111 ------------------~~l~~~~~~LkpgG~~~~~~~~~~~---~~---~~----~~~~~~~~~~~w~~~~~~~~~~~ 162 (258)
T PRK01683 111 ------------------ELFPRLVSLLAPGGVLAVQMPDNLD---EP---SH----VLMREVAENGPWEQNLPDRGARR 162 (258)
T ss_pred ------------------HHHHHHHHhcCCCcEEEEECCCCCC---CH---HH----HHHHHHHccCchHHHhccccccC
Confidence 3788889999999999998644322 11 11 12233332221111111111234
Q ss_pred ccCCCHHHHHHHHhcCCceEEeEEEEEeecCCCCCCCCCcccccccccchhHHHHHHHHHh-HHHHHhhcChhHHHHHHH
Q 036911 254 YYAPSPEEVRHVIQTEGSFNIRRFDIHTVDWDANKDDGSKSLTSGRHTRGKNIAKSIRAVS-ESMLASHFGEEIMDDLFE 332 (359)
Q Consensus 254 ~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~Ra~~-ep~l~~h~~~~i~delf~ 332 (359)
.++++++++...+...| +.++..+... ... +. ....+..|++++. .|++ .+++++..++|.+
T Consensus 163 ~~~~~~~~~~~~l~~~g-~~v~~~~~~~-~~~--~~------------~~~~~~~~~~~~~~~~~~-~~l~~~~~~~f~~ 225 (258)
T PRK01683 163 APLPPPHAYYDALAPAA-CRVDIWHTTY-YHP--MP------------SAQAIVEWVKGTGLRPFL-DPLTESEQAAFLA 225 (258)
T ss_pred cCCCCHHHHHHHHHhCC-Cceeeeeeee-eee--cC------------CchhhhhhhhhccHHHHH-hhCCHHHHHHHHH
Confidence 57789999999999998 6665544321 111 11 1346777888754 6776 7799999999999
Q ss_pred HHHHHHHHHHh--hC---CCCEEEEEEEEeeC
Q 036911 333 RLAKKISEYLE--FA---PGHSTTMVISMTKS 359 (359)
Q Consensus 333 r~~~~~~~~~~--~~---~~~~~~~~~~l~r~ 359 (359)
.|.+.+.+... .. ...|..++++-+|+
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (258)
T PRK01683 226 AYLARIAEAYPLQADGKVLLAFPRLFIVARRK 257 (258)
T ss_pred HHHHHHHHHCCCCCCCcEEcccceEEEEEEec
Confidence 99999988743 22 35677778877764
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.66 E-value=6.7e-15 Score=138.51 Aligned_cols=242 Identities=14% Similarity=0.181 Sum_probs=152.1
Q ss_pred cchHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEe
Q 036911 15 DTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFL 94 (359)
Q Consensus 15 ~~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~ 94 (359)
...|.+++..|.+....++..+.. ....+|+|+|||+|..+..+.+.. |..+|+.
T Consensus 4 ~~~y~~~~~~~~~~~~~ll~~l~~----------~~~~~vLDlGcG~G~~~~~l~~~~---------------p~~~v~g 58 (255)
T PRK14103 4 PDVYLAFADHRGRPFYDLLARVGA----------ERARRVVDLGCGPGNLTRYLARRW---------------PGAVIEA 58 (255)
T ss_pred HHHHHHHHhHhhCHHHHHHHhCCC----------CCCCEEEEEcCCCCHHHHHHHHHC---------------CCCEEEE
Confidence 467999999998777655443321 245899999999999887665221 4578899
Q ss_pred cCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCC
Q 036911 95 NDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLN 174 (359)
Q Consensus 95 nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n 174 (359)
.|+.. ......+. . +-.|+. +++. .+.+++++|+++|+.++||+.+.+
T Consensus 59 vD~s~-----------~~~~~a~~-~----~~~~~~---~d~~-~~~~~~~fD~v~~~~~l~~~~d~~------------ 106 (255)
T PRK14103 59 LDSSP-----------EMVAAARE-R----GVDART---GDVR-DWKPKPDTDVVVSNAALQWVPEHA------------ 106 (255)
T ss_pred EECCH-----------HHHHHHHh-c----CCcEEE---cChh-hCCCCCCceEEEEehhhhhCCCHH------------
Confidence 99742 11111111 1 122333 5664 445778999999999999976532
Q ss_pred CcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhc--cCCc
Q 036911 175 KGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVD--WFNL 252 (359)
Q Consensus 175 ~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d--~f~~ 252 (359)
.+|+.-++.|+|||++++++.+... . + .+ ..+..+..++.+... +. .+..
T Consensus 107 -----------------~~l~~~~~~LkpgG~l~~~~~~~~~--~-~---~~----~~~~~~~~~~~w~~~-~~~~~~~~ 158 (255)
T PRK14103 107 -----------------DLLVRWVDELAPGSWIAVQVPGNFD--A-P---SH----AAVRALARREPWAKL-LRDIPFRV 158 (255)
T ss_pred -----------------HHHHHHHHhCCCCcEEEEEcCCCcC--C-h---hH----HHHHHHhccCchhHH-hccccccc
Confidence 3777778999999999998766422 1 1 11 112222222211111 11 1233
Q ss_pred CccCCCHHHHHHHHhcCCceEEeEEEEEeecCCCCCCCCCcccccccccchhHHHHHHHHH-hHHHHHhhcChhHHHHHH
Q 036911 253 PYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDWDANKDDGSKSLTSGRHTRGKNIAKSIRAV-SESMLASHFGEEIMDDLF 331 (359)
Q Consensus 253 P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~Ra~-~ep~l~~h~~~~i~delf 331 (359)
+..+.+++++.+++++.| |++...+..... .. . ....+..|+++. +.+++ +.++++.++++.
T Consensus 159 ~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~-~~--~------------~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 221 (255)
T PRK14103 159 GAVVQTPAGYAELLTDAG-CKVDAWETTYVH-QL--T------------GEDPVLDWITGTALRPVR-ERLSDDSWEQFR 221 (255)
T ss_pred CcCCCCHHHHHHHHHhCC-CeEEEEeeeeee-eC--C------------Cchhhhhhhhccchhhhh-hhCCHHHHHHHH
Confidence 456789999999999999 987766543221 11 1 123566677755 35666 479999999999
Q ss_pred HHHHHHHHHHH-hhCC----CCEEEEEEEEee
Q 036911 332 ERLAKKISEYL-EFAP----GHSTTMVISMTK 358 (359)
Q Consensus 332 ~r~~~~~~~~~-~~~~----~~~~~~~~~l~r 358 (359)
+.+.+.+++.+ .... ..|.-++++=+|
T Consensus 222 ~~~~~~l~~~~~~~~~g~~~~~~~~~~~~a~~ 253 (255)
T PRK14103 222 AELIPLLREAYPPRADGTTFFPFRRVFVVARV 253 (255)
T ss_pred HHHHHHHHHHCCCCCCCcEEeeeccEEEEEEe
Confidence 99999988774 3232 334445554443
No 5
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.64 E-value=1.5e-14 Score=135.64 Aligned_cols=230 Identities=12% Similarity=0.159 Sum_probs=147.0
Q ss_pred cchHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEe
Q 036911 15 DTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFL 94 (359)
Q Consensus 15 ~~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~ 94 (359)
..+|++++.+|+.++..+...+.. ....+|+|+|||+|.+|..+. +. ..+++.
T Consensus 17 a~~Y~~~~~~q~~~a~~l~~~l~~----------~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~ 69 (251)
T PRK10258 17 AAHYEQHAELQRQSADALLAMLPQ----------RKFTHVLDAGCGPGWMSRYWR--------ER---------GSQVTA 69 (251)
T ss_pred HHhHhHHHHHHHHHHHHHHHhcCc----------cCCCeEEEeeCCCCHHHHHHH--------Hc---------CCeEEE
Confidence 468999999999999887765542 235789999999998877653 11 267888
Q ss_pred cCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCC
Q 036911 95 NDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLN 174 (359)
Q Consensus 95 nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n 174 (359)
.|+.. ...+..+.... ...|+. +++....++++++|+|+|+.++||+.+.+
T Consensus 70 ~D~s~-----------~~l~~a~~~~~---~~~~~~---~d~~~~~~~~~~fD~V~s~~~l~~~~d~~------------ 120 (251)
T PRK10258 70 LDLSP-----------PMLAQARQKDA---ADHYLA---GDIESLPLATATFDLAWSNLAVQWCGNLS------------ 120 (251)
T ss_pred EECCH-----------HHHHHHHhhCC---CCCEEE---cCcccCcCCCCcEEEEEECchhhhcCCHH------------
Confidence 89742 12121211110 123433 57767778899999999999999976643
Q ss_pred CcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCc
Q 036911 175 KGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPY 254 (359)
Q Consensus 175 ~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~ 254 (359)
.+|+.-.+-|+|||.++++.++.++. .-+.++|..+- + -....
T Consensus 121 -----------------~~l~~~~~~Lk~gG~l~~~~~~~~~~---------~el~~~~~~~~--~---------~~~~~ 163 (251)
T PRK10258 121 -----------------TALRELYRVVRPGGVVAFTTLVQGSL---------PELHQAWQAVD--E---------RPHAN 163 (251)
T ss_pred -----------------HHHHHHHHHcCCCeEEEEEeCCCCch---------HHHHHHHHHhc--c---------CCccc
Confidence 37778899999999999999988761 11333443321 1 11223
Q ss_pred cCCCHHHHHHHHhcCCceEEeEEEEEeecCCCCCCCCCcccccccccchhHHHHHHHHHhHHHHH-----hhcChhHHHH
Q 036911 255 YAPSPEEVRHVIQTEGSFNIRRFDIHTVDWDANKDDGSKSLTSGRHTRGKNIAKSIRAVSESMLA-----SHFGEEIMDD 329 (359)
Q Consensus 255 y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~Ra~~ep~l~-----~h~~~~i~de 329 (359)
-+++.+|+.+.+...+ +++ ..+.+...++ .+..+...+|......+. ..++...+.+
T Consensus 164 ~~~~~~~l~~~l~~~~-~~~-~~~~~~~~f~----------------~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~ 225 (251)
T PRK10258 164 RFLPPDAIEQALNGWR-YQH-HIQPITLWFD----------------DALSAMRSLKGIGATHLHEGRDPRILTRSQLQR 225 (251)
T ss_pred cCCCHHHHHHHHHhCC-cee-eeeEEEEECC----------------CHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHH
Confidence 4678999999998665 554 3344444432 245677888877764432 2344444444
Q ss_pred HHHHHHHHHHHHHhhCCCCEEEEEEEEeeC
Q 036911 330 LFERLAKKISEYLEFAPGHSTTMVISMTKS 359 (359)
Q Consensus 330 lf~r~~~~~~~~~~~~~~~~~~~~~~l~r~ 359 (359)
+.+.| .+.-......|-.+|..+.|.
T Consensus 226 ~~~~~----~~~~g~~~lty~v~~~~~~~~ 251 (251)
T PRK10258 226 LQLAW----PQQQGRYPLTYHLFLGVIERD 251 (251)
T ss_pred HHHhc----cccCCCcceEEEEEEEEEEcC
Confidence 44444 222223457888888888764
No 6
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.55 E-value=4e-13 Score=123.46 Aligned_cols=217 Identities=16% Similarity=0.282 Sum_probs=141.6
Q ss_pred CcchHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEE
Q 036911 14 GDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVF 93 (359)
Q Consensus 14 g~~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~ 93 (359)
...+|++.+..|+.+...+.+.+... ....+.+|+|+|||+|..+..+.+.. |..+++
T Consensus 5 ~~~~y~~~~~~q~~~~~~l~~~~~~~-------~~~~~~~vLDlG~G~G~~~~~l~~~~---------------~~~~~~ 62 (240)
T TIGR02072 5 AAKTYDRHAKIQREMAKRLLALLKEK-------GIFIPASVLDIGCGTGYLTRALLKRF---------------PQAEFI 62 (240)
T ss_pred hhhchhHHHHHHHHHHHHHHHHhhhh-------ccCCCCeEEEECCCccHHHHHHHHhC---------------CCCcEE
Confidence 35789999999999998888877652 11235799999999999888776322 447788
Q ss_pred ecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCC
Q 036911 94 LNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPL 173 (359)
Q Consensus 94 ~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~ 173 (359)
..|+... .....+..... +..|+. +++....++++++|+++++.++||+.+..
T Consensus 63 ~~D~~~~-----------~~~~~~~~~~~--~~~~~~---~d~~~~~~~~~~fD~vi~~~~l~~~~~~~----------- 115 (240)
T TIGR02072 63 ALDISAG-----------MLAQAKTKLSE--NVQFIC---GDAEKLPLEDSSFDLIVSNLALQWCDDLS----------- 115 (240)
T ss_pred EEeChHH-----------HHHHHHHhcCC--CCeEEe---cchhhCCCCCCceeEEEEhhhhhhccCHH-----------
Confidence 8887432 11111111111 123333 57777788999999999999999975532
Q ss_pred CCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcC
Q 036911 174 NKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLP 253 (359)
Q Consensus 174 n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P 253 (359)
.+|+...+-|+|||.++++.++.+.. . .+.+...+ ..
T Consensus 116 ------------------~~l~~~~~~L~~~G~l~~~~~~~~~~------------~-~~~~~~~~------------~~ 152 (240)
T TIGR02072 116 ------------------QALSELARVLKPGGLLAFSTFGPGTL------------H-ELRQSFGQ------------HG 152 (240)
T ss_pred ------------------HHHHHHHHHcCCCcEEEEEeCCccCH------------H-HHHHHHHH------------hc
Confidence 47888999999999999998776651 0 11111110 12
Q ss_pred ccCCCHHHHHHHHhcCCceEEeEEEEEeecCCCCCCCCCcccccccccchhHHHHHHHHHhHHHH-HhhcChhHHHHHHH
Q 036911 254 YYAPSPEEVRHVIQTEGSFNIRRFDIHTVDWDANKDDGSKSLTSGRHTRGKNIAKSIRAVSESML-ASHFGEEIMDDLFE 332 (359)
Q Consensus 254 ~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~Ra~~ep~l-~~h~~~~i~delf~ 332 (359)
..+++.+++.+++.+. |.+..++........ . ....+..++|....... ...++.+...++.+
T Consensus 153 ~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~~--~------------~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 216 (240)
T TIGR02072 153 LRYLSLDELKALLKNS--FELLTLEEELITLSF--D------------DPLDVLRHLKKTGANGLSSGRTSRKQLKAFLE 216 (240)
T ss_pred cCCCCHHHHHHHHHHh--cCCcEEEEEEEEEeC--C------------CHHHHHHHHHHhccCcCCCCCCCHHHHHHHHH
Confidence 3567899999998765 777666544333211 1 13467777777655222 23366666777777
Q ss_pred HHHHHH
Q 036911 333 RLAKKI 338 (359)
Q Consensus 333 r~~~~~ 338 (359)
.|.+..
T Consensus 217 ~~~~~~ 222 (240)
T TIGR02072 217 RYEQEF 222 (240)
T ss_pred HHHHhh
Confidence 776554
No 7
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.39 E-value=1e-11 Score=112.52 Aligned_cols=220 Identities=17% Similarity=0.223 Sum_probs=143.5
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
.+.+|.|||||+|..|.+|. +++ |..++..-|-. +.+.++..+.. +.-.|.
T Consensus 30 ~~~~v~DLGCGpGnsTelL~--------~Rw-------P~A~i~GiDsS-----------~~Mla~Aa~rl---p~~~f~ 80 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLA--------RRW-------PDAVITGIDSS-----------PAMLAKAAQRL---PDATFE 80 (257)
T ss_pred ccceeeecCCCCCHHHHHHH--------HhC-------CCCeEeeccCC-----------HHHHHHHHHhC---CCCcee
Confidence 47899999999999999998 444 67888888843 33333332221 122333
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
-| +. ...-|+...|++||+.+||||.+.|. .|..--.+|.|||.|.+
T Consensus 81 ~a---Dl-~~w~p~~~~dllfaNAvlqWlpdH~~-----------------------------ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 81 EA---DL-RTWKPEQPTDLLFANAVLQWLPDHPE-----------------------------LLPRLVSQLAPGGVLAV 127 (257)
T ss_pred cc---cH-hhcCCCCccchhhhhhhhhhccccHH-----------------------------HHHHHHHhhCCCceEEE
Confidence 32 22 35568999999999999999888775 45555778999999999
Q ss_pred EEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCc-CccCCCHHHHHHHHhcCCceEEeEEEEEeecCCCCC
Q 036911 210 SIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNL-PYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDWDANK 288 (359)
Q Consensus 210 ~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~-P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~~~~~ 288 (359)
.|++.-+ +|+ ...+++.+.++- -+.++.++.. ----+|+.-|-+++...+ -+|+.-++..- .
T Consensus 128 QmPdN~d---eps-------H~~mr~~A~~~p-~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T~Y~---h-- 190 (257)
T COG4106 128 QMPDNLD---EPS-------HRLMRETADEAP-FAQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHTTYY---H-- 190 (257)
T ss_pred ECCCccC---chh-------HHHHHHHHhcCc-hhhhhCccccccCCCCCHHHHHHHhCccc-ceeeeeeeecc---c--
Confidence 9987654 232 233344444442 2222332211 123468888888887665 44444443321 1
Q ss_pred CCCCcccccccccchhHHHHHHHHHhH-HHHHhhcChhHHHHHHHHHHHHHHHHH-hhCC----CCEEEEEEEEeeC
Q 036911 289 DDGSKSLTSGRHTRGKNIAKSIRAVSE-SMLASHFGEEIMDDLFERLAKKISEYL-EFAP----GHSTTMVISMTKS 359 (359)
Q Consensus 289 ~~~~~~~~~d~~~~~~~~~~~~Ra~~e-p~l~~h~~~~i~delf~r~~~~~~~~~-~~~~----~~~~~~~~~l~r~ 359 (359)
. -..+..+..|+++..- |++ ..++++-...|.++|..++.+++ ...+ ..|.-+||+-+|+
T Consensus 191 -~---------l~~a~aIvdWvkgTgLrP~L-~~L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRlFiVA~~~ 256 (257)
T COG4106 191 -Q---------LPGADAIVDWVKGTGLRPYL-DRLDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRLFIVATRG 256 (257)
T ss_pred -c---------CCCccchhhheeccccceec-cccCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceEEEEEecC
Confidence 0 0124578999997766 888 55999999999999999999864 3322 3455677776663
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.31 E-value=8.4e-11 Score=111.44 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=100.1
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh-----CCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK-----GSNF 124 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~-----~~~~ 124 (359)
...+|+|+|||+|..+..+.+.+ .|..+|+..|+..+ ..+..++.. ....
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~--------------~~~~~V~gvD~S~~-----------ml~~A~~r~~~~~~~~~~ 127 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKV--------------GSDGKVMGLDFSSE-----------QLAVAASRQELKAKSCYK 127 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHh--------------CCCCEEEEEECCHH-----------HHHHHHHHhhhhhhccCC
Confidence 35799999999999887665322 24468899997532 212111110 0010
Q ss_pred CCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccC
Q 036911 125 GPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSG 204 (359)
Q Consensus 125 ~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pG 204 (359)
+-.|+. ++.....+|++|+|++++++++||+.+.. .+|+.-++.|+||
T Consensus 128 ~i~~~~---~d~~~lp~~~~sfD~V~~~~~l~~~~d~~-----------------------------~~l~ei~rvLkpG 175 (261)
T PLN02233 128 NIEWIE---GDATDLPFDDCYFDAITMGYGLRNVVDRL-----------------------------KAMQEMYRVLKPG 175 (261)
T ss_pred CeEEEE---cccccCCCCCCCEeEEEEecccccCCCHH-----------------------------HHHHHHHHHcCcC
Confidence 122333 57777788999999999999999976532 4788889999999
Q ss_pred ceEEEEEecCCCCCCCCchhHHHHHH-HHHHHHHH-hccchhhhhccC-CcCccCCCHHHHHHHHhcCCceEEeEEE
Q 036911 205 GHVLLSIIGNDRKPGDPRCTGWELLG-VTLNDMVL-EGLVEEAKVDWF-NLPYYAPSPEEVRHVIQTEGSFNIRRFD 278 (359)
Q Consensus 205 G~l~~~~~g~~~~~~~~~~~~~~~l~-~al~~mv~-eGli~~e~~d~f-~~P~y~~s~~E~~~~i~~~Gsf~i~~~e 278 (359)
|++++..+++.+ ......+++.+- ..+.-+.. -|. .+++... ..=-.+++.+|+.+.+++.| |++.+..
T Consensus 176 G~l~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~~~~~ 247 (261)
T PLN02233 176 SRVSILDFNKST--QPFTTSMQEWMIDNVVVPVATGYGL--AKEYEYLKSSINEYLTGEELEKLALEAG-FSSAKHY 247 (261)
T ss_pred cEEEEEECCCCC--cHHHHHHHHHHHhhhhhHHHHHhCC--hHHHHHHHHHHHhcCCHHHHHHHHHHCC-CCEEEEE
Confidence 999999988766 211011111111 11111100 121 1111000 00012789999999999999 9876543
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=4.9e-11 Score=111.17 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=108.2
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCC-CC-CCe
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGS-NF-GPC 127 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~-~~-~~~ 127 (359)
...+|||+|||||..|+.+.+.+ ++.+|+..|...+ ++ ...++.... .. .-.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~---------------g~g~v~~~D~s~~----------ML-~~a~~k~~~~~~~~i~ 104 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV---------------GTGEVVGLDISES----------ML-EVAREKLKKKGVQNVE 104 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc---------------CCceEEEEECCHH----------HH-HHHHHHhhccCccceE
Confidence 46999999999999999887443 2588999997543 22 212221111 00 123
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
|+. |++.+.+||++|+|++.+++.||++.+.+. .|+--++.|||||++
T Consensus 105 fv~---~dAe~LPf~D~sFD~vt~~fglrnv~d~~~-----------------------------aL~E~~RVlKpgG~~ 152 (238)
T COG2226 105 FVV---GDAENLPFPDNSFDAVTISFGLRNVTDIDK-----------------------------ALKEMYRVLKPGGRL 152 (238)
T ss_pred EEE---echhhCCCCCCccCEEEeeehhhcCCCHHH-----------------------------HHHHHHHhhcCCeEE
Confidence 444 799999999999999999999999998775 666779999999999
Q ss_pred EEEEecCCCCCCCCc-hhHHHHHHH-HHHHHHHhccch--hhhhc-cCCcCccCCCHHHHHHHHhcCCceEEeE
Q 036911 208 LLSIIGNDRKPGDPR-CTGWELLGV-TLNDMVLEGLVE--EAKVD-WFNLPYYAPSPEEVRHVIQTEGSFNIRR 276 (359)
Q Consensus 208 ~~~~~g~~~~~~~~~-~~~~~~l~~-al~~mv~eGli~--~e~~d-~f~~P~y~~s~~E~~~~i~~~Gsf~i~~ 276 (359)
++.-+++++ ..+. ......... ++-.+. .++. .+++. -.....-+|+.+++.+.+++.| |+...
T Consensus 153 ~vle~~~p~--~~~~~~~~~~~~~~~v~P~~g--~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~ 221 (238)
T COG2226 153 LVLEFSKPD--NPVLRKAYILYYFKYVLPLIG--KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVR 221 (238)
T ss_pred EEEEcCCCC--chhhHHHHHHHHHHhHhhhhc--eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEe
Confidence 999999877 3222 111112222 211111 1111 11111 1123446899999999999999 88655
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.23 E-value=9.5e-11 Score=108.23 Aligned_cols=169 Identities=13% Similarity=0.132 Sum_probs=100.6
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh-CCCCCCeEE
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK-GSNFGPCFI 129 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~-~~~~~~~f~ 129 (359)
..+|+|+|||+|..+..+.+.+ .|..+++..|+..+ .....+... ....+++
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~~-----------~~~~a~~~~~~~~~~~v-- 98 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAV--------------GPEGHVIGLDFSEN-----------MLSVGRQKVKDAGLHNV-- 98 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHh--------------CCCCEEEEEECCHH-----------HHHHHHHHHHhcCCCce--
Confidence 5799999999999888776432 24578999998421 111111110 1111121
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
..+.+++....+|++++|+|+++.++||+++.. .+|+...+-|+|||++++
T Consensus 99 ~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~-----------------------------~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 99 ELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYM-----------------------------QVLREMYRVVKPGGKVVC 149 (231)
T ss_pred EEEEechhcCCCCCCCccEEEEecccccCCCHH-----------------------------HHHHHHHHHcCcCeEEEE
Confidence 223456666667889999999999999976532 377788899999999998
Q ss_pred EEecCCCCCCCCchhHH----HHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEE
Q 036911 210 SIIGNDRKPGDPRCTGW----ELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIH 280 (359)
Q Consensus 210 ~~~g~~~~~~~~~~~~~----~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~ 280 (359)
...+.++ .......+ ..+-..+......+..+..... ..-..+|+.+|+++.+++.| |++.+++.+
T Consensus 150 ~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 150 LETSQPT--IPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred EECCCCC--ChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 8776655 21101110 0001111111111100000000 01235789999999999999 998877654
No 11
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.22 E-value=8.1e-10 Score=112.99 Aligned_cols=192 Identities=19% Similarity=0.226 Sum_probs=121.8
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh-hCCCCCCeE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV-KGSNFGPCF 128 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~-~~~~~~~~f 128 (359)
...+|+|+|||+|..++.+.+ . ...+++..|+... .....+.. .+...+-.|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~--------~--------~~~~v~gvDiS~~-----------~l~~A~~~~~~~~~~v~~ 318 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAE--------N--------FDVHVVGIDLSVN-----------MISFALERAIGRKCSVEF 318 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHH--------h--------cCCEEEEEECCHH-----------HHHHHHHHhhcCCCceEE
Confidence 357999999999998776652 2 1367888898521 11111111 111111233
Q ss_pred EecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 129 IAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
.. +++....+|++++|+|+|..+++|+.+.+ .+|+.-++-|+|||+++
T Consensus 319 ~~---~d~~~~~~~~~~fD~I~s~~~l~h~~d~~-----------------------------~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 319 EV---ADCTKKTYPDNSFDVIYSRDTILHIQDKP-----------------------------ALFRSFFKWLKPGGKVL 366 (475)
T ss_pred EE---cCcccCCCCCCCEEEEEECCcccccCCHH-----------------------------HHHHHHHHHcCCCeEEE
Confidence 33 67778888999999999999999976533 37888899999999999
Q ss_pred EEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEEeecCCCCC
Q 036911 209 LSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDWDANK 288 (359)
Q Consensus 209 ~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~~~~~ 288 (359)
+..+.+.. ..+.. .+..... ...+..++.+++.+++++.| |++...+.+..
T Consensus 367 i~~~~~~~--~~~~~--------~~~~~~~------------~~g~~~~~~~~~~~~l~~aG-F~~i~~~d~~~------ 417 (475)
T PLN02336 367 ISDYCRSP--GTPSP--------EFAEYIK------------QRGYDLHDVQAYGQMLKDAG-FDDVIAEDRTD------ 417 (475)
T ss_pred EEEeccCC--CCCcH--------HHHHHHH------------hcCCCCCCHHHHHHHHHHCC-CeeeeeecchH------
Confidence 99887765 22211 1111100 01235678999999999999 99876543321
Q ss_pred CCCCcccccccccchhHHHHHHHHHhH--HHHHhhcChhHHHHHHHHHHHHHHHH
Q 036911 289 DDGSKSLTSGRHTRGKNIAKSIRAVSE--SMLASHFGEEIMDDLFERLAKKISEY 341 (359)
Q Consensus 289 ~~~~~~~~~d~~~~~~~~~~~~Ra~~e--p~l~~h~~~~i~delf~r~~~~~~~~ 341 (359)
.+...+..+..++.. .-+.+.+|++..+.+...+...+...
T Consensus 418 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 460 (475)
T PLN02336 418 ------------QFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVRS 460 (475)
T ss_pred ------------HHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhhh
Confidence 234444444444322 12235688888888888888776643
No 12
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.20 E-value=7.6e-10 Score=105.01 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=115.6
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
...+|+|+|||+|..+..++ +. ...+|+..|+..+ .....+..........|
T Consensus 52 ~~~~VLDiGcG~G~~a~~la--------~~--------~~~~v~giD~s~~-----------~~~~a~~~~~~~~~i~~- 103 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN--------EK--------YGAHVHGVDICEK-----------MVNIAKLRNSDKNKIEF- 103 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH--------hh--------cCCEEEEEECCHH-----------HHHHHHHHcCcCCceEE-
Confidence 45799999999999887665 21 1268888897532 11111111111111223
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
+.+++....+|++++|+|+|..++++++. .|...+|+.-++-|+|||++++
T Consensus 104 --~~~D~~~~~~~~~~FD~V~s~~~l~h~~~---------------------------~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 104 --EANDILKKDFPENTFDMIYSRDAILHLSY---------------------------ADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred --EECCcccCCCCCCCeEEEEEhhhHHhCCH---------------------------HHHHHHHHHHHHHcCCCcEEEE
Confidence 34688778889999999999888766431 1233588889999999999999
Q ss_pred EEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEEeecCCCCCC
Q 036911 210 SIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDWDANKD 289 (359)
Q Consensus 210 ~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~~~~~~ 289 (359)
+-+...+ ... | ...+.+.... . .+..++++++.+++++.| |++...+-....|..
T Consensus 155 ~d~~~~~--~~~----~---~~~~~~~~~~----------~--~~~~~~~~~~~~~l~~aG-F~~v~~~d~~~~~~~--- 209 (263)
T PTZ00098 155 TDYCADK--IEN----W---DEEFKAYIKK----------R--KYTLIPIQEYGDLIKSCN-FQNVVAKDISDYWLE--- 209 (263)
T ss_pred EEecccc--ccC----c---HHHHHHHHHh----------c--CCCCCCHHHHHHHHHHCC-CCeeeEEeCcHHHHH---
Confidence 8876654 111 1 1111111110 0 124579999999999999 988766533222211
Q ss_pred CCCcccccccccchhHHHHHHHHHhHHHHHhhcChhHHHHHHHHHHHHHH
Q 036911 290 DGSKSLTSGRHTRGKNIAKSIRAVSESMLASHFGEEIMDDLFERLAKKIS 339 (359)
Q Consensus 290 ~~~~~~~~d~~~~~~~~~~~~Ra~~ep~l~~h~~~~i~delf~r~~~~~~ 339 (359)
-+. .+..-+++- +.-+...+|++..+.+-.-+.+.+.
T Consensus 210 -----------~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 210 -----------LLQ-VELKKLEEK-KEEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred -----------HHH-HHHHHHHHh-HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 011 122222222 2334456888777777766666554
No 13
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.19 E-value=5.6e-10 Score=104.03 Aligned_cols=161 Identities=20% Similarity=0.175 Sum_probs=99.7
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh---hCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV---KGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~---~~~~~~~ 126 (359)
...+|+|+|||+|..+..+++.+ ..|..+++..|+.. ......++. .+...+-
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~-----------~ml~~a~~~~~~~~~~~~v 108 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQ-----------PMVERCRQHIAAYHSEIPV 108 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-----------HHHHHHHHHHHhcCCCCCe
Confidence 45699999999999988777432 12568899999742 121212111 1111111
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
.| +.+++....++ +.|++++++++||++. .|...+|+...+.|+|||.
T Consensus 109 ~~---~~~d~~~~~~~--~~d~v~~~~~l~~~~~---------------------------~~~~~~l~~i~~~LkpgG~ 156 (239)
T TIGR00740 109 EI---LCNDIRHVEIK--NASMVILNFTLQFLPP---------------------------EDRIALLTKIYEGLNPNGV 156 (239)
T ss_pred EE---EECChhhCCCC--CCCEEeeecchhhCCH---------------------------HHHHHHHHHHHHhcCCCeE
Confidence 23 34688665554 4789999999999753 1233588899999999999
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHHHHHHHH-hccchhhhh----ccCCcCccCCCHHHHHHHHhcCCceE
Q 036911 207 VLLSIIGNDRKPGDPRCTGWELLGVTLNDMVL-EGLVEEAKV----DWFNLPYYAPSPEEVRHVIQTEGSFN 273 (359)
Q Consensus 207 l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~-eGli~~e~~----d~f~~P~y~~s~~E~~~~i~~~Gsf~ 273 (359)
++++-..+.+ .. ...+.+...+..+.. +|. +.+++ +.+.-.....|++|+.+++++.| |+
T Consensus 157 l~i~d~~~~~--~~---~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 157 LVLSEKFRFE--DT---KINHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred EEEeecccCC--CH---hHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 9998765544 21 122333333333332 443 43333 22222345579999999999999 76
No 14
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.15 E-value=1.3e-10 Score=113.51 Aligned_cols=153 Identities=19% Similarity=0.234 Sum_probs=97.4
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..+..++ +. .+ -+|+..|.. ..+..-++.. ....+.. .++-
T Consensus 123 g~~VLDIGCG~G~~~~~la--------~~-------g~-~~V~GiD~S-~~~l~q~~a~-------~~~~~~~-~~i~-- 175 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRML--------GA-------GA-KLVVGIDPS-QLFLCQFEAV-------RKLLGND-QRAH-- 175 (322)
T ss_pred CCEEEEeccCCcHHHHHHH--------Hc-------CC-CEEEEEcCC-HHHHHHHHHH-------HHhcCCC-CCeE--
Confidence 4699999999999988775 21 13 358888843 2222111111 0111111 1222
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
-+++++....+ ++++|+|+|..+||+..+.. .+|+.-++.|+|||.+++.
T Consensus 176 ~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~-----------------------------~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 176 LLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPL-----------------------------DHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred EEeCCHHHCCC-cCCcCEEEECChhhccCCHH-----------------------------HHHHHHHHhcCCCcEEEEE
Confidence 23467765555 78999999999999865422 3788889999999999998
Q ss_pred EecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEE
Q 036911 211 IIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIH 280 (359)
Q Consensus 211 ~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~ 280 (359)
.+..+.. ... .++..+.+..+...++.||.+++..++++.| |++.++...
T Consensus 226 ~~~i~~~-~~~------------------~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~ 275 (322)
T PRK15068 226 TLVIDGD-ENT------------------VLVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDV 275 (322)
T ss_pred EEEecCC-Ccc------------------ccCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeC
Confidence 7655441 110 1112222333444456799999999999999 998877654
No 15
>PRK08317 hypothetical protein; Provisional
Probab=99.15 E-value=1.4e-08 Score=93.05 Aligned_cols=220 Identities=19% Similarity=0.169 Sum_probs=122.3
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh-hCCCCCCeE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV-KGSNFGPCF 128 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~-~~~~~~~~f 128 (359)
...+|+|+|||+|..+..+.+.+ .|..+++..|+..+ .....++. ........|
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~-----------~~~~a~~~~~~~~~~~~~ 73 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEA-----------MLALAKERAAGLGPNVEF 73 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHH-----------HHHHHHHHhhCCCCceEE
Confidence 35799999999999888776332 14468888887421 11111111 111111233
Q ss_pred EecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 129 IAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
+. +++....++++++|++++..++||+.+.+ .+|+...+-|+|||+++
T Consensus 74 ~~---~d~~~~~~~~~~~D~v~~~~~~~~~~~~~-----------------------------~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 74 VR---GDADGLPFPDGSFDAVRSDRVLQHLEDPA-----------------------------RALAEIARVLRPGGRVV 121 (241)
T ss_pred Ee---cccccCCCCCCCceEEEEechhhccCCHH-----------------------------HHHHHHHHHhcCCcEEE
Confidence 33 46666667889999999999999976633 37888899999999999
Q ss_pred EEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEEeecCCCCC
Q 036911 209 LSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDWDANK 288 (359)
Q Consensus 209 ~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~~~~~ 288 (359)
+.....+.....+ .....+...+..+.. .+. -..+..++...+++.| |++..++.+...... .
T Consensus 122 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----------~~~---~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~-~ 184 (241)
T PRK08317 122 VLDTDWDTLVWHS--GDRALMRKILNFWSD----------HFA---DPWLGRRLPGLFREAG-LTDIEVEPYTLIETD-L 184 (241)
T ss_pred EEecCCCceeecC--CChHHHHHHHHHHHh----------cCC---CCcHHHHHHHHHHHcC-CCceeEEEEEEeccC-c
Confidence 8875432210000 001111211111111 111 1124568999999999 998888776654322 1
Q ss_pred CCCCcccccccccchhHHHHHHHHHhHHHHHhhcChhHHHHHHHHHHHHHHHHHhhCCC-CEEEEEEEEeeC
Q 036911 289 DDGSKSLTSGRHTRGKNIAKSIRAVSESMLASHFGEEIMDDLFERLAKKISEYLEFAPG-HSTTMVISMTKS 359 (359)
Q Consensus 289 ~~~~~~~~~d~~~~~~~~~~~~Ra~~ep~l~~h~~~~i~delf~r~~~~~~~~~~~~~~-~~~~~~~~l~r~ 359 (359)
.. ......+...++.+.+ ..-+.++-++++++..++... .... -++++++...||
T Consensus 185 ~~---------~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~k 240 (241)
T PRK08317 185 KE---------ADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLAR----AGEFFFSVTGFLVVGRK 240 (241)
T ss_pred ch---------hhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHh----cCCEEEEEEEEEEEEeC
Confidence 10 1122333344444432 122455666777776666432 2222 235556555554
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.14 E-value=5.3e-10 Score=105.31 Aligned_cols=163 Identities=20% Similarity=0.250 Sum_probs=99.7
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh---hCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV---KGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~---~~~~~~~ 126 (359)
.+.+|+|+|||+|..+..++ +. ..+|+..|+.. ......++. .+...+-
T Consensus 44 ~~~~vLDiGcG~G~~a~~la--------~~---------g~~v~~vD~s~-----------~~l~~a~~~~~~~g~~~~v 95 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLA--------EL---------GHQVILCDLSA-----------EMIQRAKQAAEAKGVSDNM 95 (255)
T ss_pred CCCEEEEeCCCchHHHHHHH--------Hc---------CCEEEEEECCH-----------HHHHHHHHHHHhcCCccce
Confidence 46799999999999888776 21 26788889742 121212211 1211112
Q ss_pred eEEecccCCcccC-CCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 127 CFIAGIPGSFYGR-LFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 127 ~f~~~v~gsFy~~-lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
.|+. +++.+. .++++++|++++..+|||+.+.+ .+|+.-++-|+|||
T Consensus 96 ~~~~---~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~-----------------------------~~l~~~~~~LkpgG 143 (255)
T PRK11036 96 QFIH---CAAQDIAQHLETPVDLILFHAVLEWVADPK-----------------------------SVLQTLWSVLRPGG 143 (255)
T ss_pred EEEE---cCHHHHhhhcCCCCCEEEehhHHHhhCCHH-----------------------------HHHHHHHHHcCCCe
Confidence 3333 455443 25678999999999999987633 26777789999999
Q ss_pred eEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEEee
Q 036911 206 HVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTV 282 (359)
Q Consensus 206 ~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~ 282 (359)
++++.+..... ..+-..+..-+ +.+..|+...+.. . ..|.+..+++++.+++++.| |+++...-++.
T Consensus 144 ~l~i~~~n~~~------~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~p~~~~~~~~l~~~l~~aG-f~~~~~~gi~~ 210 (255)
T PRK11036 144 ALSLMFYNANG------LLMHNMVAGNF-DYVQAGMPKRKKR-T-LSPDYPLDPEQVYQWLEEAG-WQIMGKTGVRV 210 (255)
T ss_pred EEEEEEECccH------HHHHHHHccCh-HHHHhcCcccccc-C-CCCCCCCCHHHHHHHHHHCC-CeEeeeeeEEE
Confidence 99988766543 00001111001 1112232111111 1 23566789999999999999 99987766553
No 17
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.13 E-value=6.8e-11 Score=110.34 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=69.9
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh---hCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV---KGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~---~~~~~~~ 126 (359)
...+|+|+|||||..|..+.+.+ .|..+|+..|+.. ......++. .+.. +-
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s~-----------~ML~~a~~k~~~~~~~-~i 100 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDISP-----------GMLEVARKKLKREGLQ-NI 100 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES-H-----------HHHHHHHHHHHHTT---SE
T ss_pred CCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCCH-----------HHHHHHHHHHHhhCCC-Ce
Confidence 36799999999999988776222 3457899999752 222222211 1111 12
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
.|+. |+..+.+||++|+|.+++++.||-+.+.+ ..|+.-.+.|||||+
T Consensus 101 ~~v~---~da~~lp~~d~sfD~v~~~fglrn~~d~~-----------------------------~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 101 EFVQ---GDAEDLPFPDNSFDAVTCSFGLRNFPDRE-----------------------------RALREMYRVLKPGGR 148 (233)
T ss_dssp EEEE----BTTB--S-TT-EEEEEEES-GGG-SSHH-----------------------------HHHHHHHHHEEEEEE
T ss_pred eEEE---cCHHHhcCCCCceeEEEHHhhHHhhCCHH-----------------------------HHHHHHHHHcCCCeE
Confidence 3433 78889999999999999999999876643 367788999999999
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHHHHHHH-H--hccchhh--hhccC-CcCccCCCHHHHHHHHhcCCceEEeEEE
Q 036911 207 VLLSIIGNDRKPGDPRCTGWELLGVTLNDMV-L--EGLVEEA--KVDWF-NLPYYAPSPEEVRHVIQTEGSFNIRRFD 278 (359)
Q Consensus 207 l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv-~--eGli~~e--~~d~f-~~P~y~~s~~E~~~~i~~~Gsf~i~~~e 278 (359)
+++.-++++. . ..+..+-..+...+ - -.++..+ .++-. ..-.-+|+.+|+.+.+++.| |+..+.+
T Consensus 149 l~ile~~~p~--~----~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~~ 219 (233)
T PF01209_consen 149 LVILEFSKPR--N----PLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAG-FKNVEYR 219 (233)
T ss_dssp EEEEEEEB-S--S----HHHHHHHHH----------------------------------------------------
T ss_pred EEEeeccCCC--C----chhhceeeeeecccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 9999999887 2 22222211111110 0 1222222 11100 12224789999999999999 8754433
No 18
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.12 E-value=9.4e-10 Score=107.30 Aligned_cols=154 Identities=15% Similarity=0.064 Sum_probs=97.5
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh---CCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK---GSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~---~~~~~~~ 127 (359)
..+|+|+|||+|..+..+. + +..+|+.-|+.. ......+... +....-.
T Consensus 132 g~~ILDIGCG~G~~s~~La--------~---------~g~~V~GID~s~-----------~~i~~Ar~~~~~~~~~~~i~ 183 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLA--------R---------MGATVTGVDAVD-----------KNVKIARLHADMDPVTSTIE 183 (322)
T ss_pred CCEEEEeeCCCCHHHHHHH--------H---------cCCEEEEEeCCH-----------HHHHHHHHHHHhcCccccee
Confidence 4699999999999887664 1 236888888742 1111121111 1100122
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
|+. +++.+..++++++|+|++..+||++.+.+ .||+..++-|+|||++
T Consensus 184 ~~~---~dae~l~~~~~~FD~Vi~~~vLeHv~d~~-----------------------------~~L~~l~r~LkPGG~l 231 (322)
T PLN02396 184 YLC---TTAEKLADEGRKFDAVLSLEVIEHVANPA-----------------------------EFCKSLSALTIPNGAT 231 (322)
T ss_pred EEe---cCHHHhhhccCCCCEEEEhhHHHhcCCHH-----------------------------HHHHHHHHHcCCCcEE
Confidence 333 56766667788999999999999987743 3889999999999999
Q ss_pred EEEEecCCCCCCCCchhHHHHHH--HHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEE
Q 036911 208 LLSIIGNDRKPGDPRCTGWELLG--VTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIH 280 (359)
Q Consensus 208 ~~~~~g~~~~~~~~~~~~~~~l~--~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~ 280 (359)
+++.+.+.. ...+..+. .-+...+..| ......+.+++|+.+++++.| |++..+.-+
T Consensus 232 iist~nr~~------~~~~~~i~~~eyi~~~lp~g---------th~~~~f~tp~eL~~lL~~aG-f~i~~~~G~ 290 (322)
T PLN02396 232 VLSTINRTM------RAYASTIVGAEYILRWLPKG---------THQWSSFVTPEELSMILQRAS-VDVKEMAGF 290 (322)
T ss_pred EEEECCcCH------HHHHHhhhhHHHHHhcCCCC---------CcCccCCCCHHHHHHHHHHcC-CeEEEEeee
Confidence 999976543 11111110 0011111111 011124789999999999999 999887643
No 19
>PLN02244 tocopherol O-methyltransferase
Probab=99.09 E-value=2.6e-09 Score=105.05 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=96.3
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHH---HhhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLK---EVKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~---~~~~~~~~~ 126 (359)
...+|+|+|||+|.++..+.+.. ..+|+..|+..+ .....+ ...+...+-
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~----------------g~~v~gvD~s~~-----------~i~~a~~~~~~~g~~~~v 170 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY----------------GANVKGITLSPV-----------QAARANALAAAQGLSDKV 170 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc----------------CCEEEEEECCHH-----------HHHHHHHHHHhcCCCCce
Confidence 35799999999999998876321 257777787421 111111 111221122
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
.|.. +++.+..|+++++|+|+|..++|++.+.. .+|+.-.+.|+|||+
T Consensus 171 ~~~~---~D~~~~~~~~~~FD~V~s~~~~~h~~d~~-----------------------------~~l~e~~rvLkpGG~ 218 (340)
T PLN02244 171 SFQV---ADALNQPFEDGQFDLVWSMESGEHMPDKR-----------------------------KFVQELARVAAPGGR 218 (340)
T ss_pred EEEE---cCcccCCCCCCCccEEEECCchhccCCHH-----------------------------HHHHHHHHHcCCCcE
Confidence 3433 57777788999999999999998865422 378888999999999
Q ss_pred EEEEEecCCCCCCCCc-hhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEE
Q 036911 207 VLLSIIGNDRKPGDPR-CTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFD 278 (359)
Q Consensus 207 l~~~~~g~~~~~~~~~-~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e 278 (359)
++++.....+ ..+. ...-..-...+..+. ..+.+| .+.+.+|+.+++++.| |+..+.+
T Consensus 219 lvi~~~~~~~--~~~~~~~l~~~~~~~~~~i~----------~~~~~p-~~~s~~~~~~~l~~aG-f~~v~~~ 277 (340)
T PLN02244 219 IIIVTWCHRD--LEPGETSLKPDEQKLLDKIC----------AAYYLP-AWCSTSDYVKLAESLG-LQDIKTE 277 (340)
T ss_pred EEEEEecccc--cccccccCCHHHHHHHHHHH----------hhccCC-CCCCHHHHHHHHHHCC-CCeeEee
Confidence 9998876544 1111 000000011111111 112233 2358999999999999 8876654
No 20
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.08 E-value=2.3e-10 Score=98.64 Aligned_cols=138 Identities=21% Similarity=0.283 Sum_probs=90.5
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeE
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCF 128 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f 128 (359)
+...+|+|+|||+|.++..+. +. + .+++..|.... .... . ...
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~--------~~--------~-~~~~g~D~~~~-----------~~~~----~----~~~- 63 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA--------KR--------G-FEVTGVDISPQ-----------MIEK----R----NVV- 63 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH--------HT--------T-SEEEEEESSHH-----------HHHH----T----TSE-
T ss_pred CCCCEEEEEcCCCCHHHHHHH--------Hh--------C-CEEEEEECCHH-----------HHhh----h----hhh-
Confidence 457899999999998776663 21 2 48888887421 1000 0 011
Q ss_pred EecccCCc--ccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 129 IAGIPGSF--YGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 129 ~~~v~gsF--y~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
+..| ....+|++++|+|+|+.+|||+.+.+ .+|+.-.+-|+|||+
T Consensus 64 ----~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~-----------------------------~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 64 ----FDNFDAQDPPFPDGSFDLIICNDVLEHLPDPE-----------------------------EFLKELSRLLKPGGY 110 (161)
T ss_dssp ----EEEEECHTHHCHSSSEEEEEEESSGGGSSHHH-----------------------------HHHHHHHHCEEEEEE
T ss_pred ----hhhhhhhhhhccccchhhHhhHHHHhhcccHH-----------------------------HHHHHHHHhcCCCCE
Confidence 1112 14456889999999999999987633 488899999999999
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeE
Q 036911 207 VLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRR 276 (359)
Q Consensus 207 l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~ 276 (359)
++++.+.+.. . ....+..+ ...... +--..+.+.++++.++++.| |+|.+
T Consensus 111 l~~~~~~~~~--~---------~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 111 LVISDPNRDD--P---------SPRSFLKW---RYDRPY-----GGHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp EEEEEEBTTS--H---------HHHHHHHC---CGTCHH-----TTTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred EEEEEcCCcc--h---------hhhHHHhc---CCcCcc-----CceeccCCHHHHHHHHHHCC-CEEEE
Confidence 9999998754 0 11111121 101110 01125669999999999999 98864
No 21
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.03 E-value=5.3e-09 Score=98.20 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=97.6
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh---CCCCC
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK---GSNFG 125 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~---~~~~~ 125 (359)
+...+|+|+|||+|.++..+.+.+ ..|..+++.-|+.. ...+..++.. +...+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~-------------~~~~~~v~gvD~S~-----------~ml~~A~~~~~~~~~~~~ 110 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDNSP-----------AMIERCRRHIDAYKAPTP 110 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhc-------------CCCCCeEEEEeCCH-----------HHHHHHHHHHHhcCCCCC
Confidence 345799999999999988776322 12568899999742 2222222211 11111
Q ss_pred CeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 126 PCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 126 ~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
-.+ +.+++....++ ..|+++++.++||++. + +...+|+..++-|+|||
T Consensus 111 v~~---~~~d~~~~~~~--~~D~vv~~~~l~~l~~-~--------------------------~~~~~l~~i~~~LkpGG 158 (247)
T PRK15451 111 VDV---IEGDIRDIAIE--NASMVVLNFTLQFLEP-S--------------------------ERQALLDKIYQGLNPGG 158 (247)
T ss_pred eEE---EeCChhhCCCC--CCCEEehhhHHHhCCH-H--------------------------HHHHHHHHHHHhcCCCC
Confidence 122 34677554443 5899999999999863 1 12247888899999999
Q ss_pred eEEEEEecCCCCCCCCchhHHHHHHHHHHHHHH-hccchhhhhcc----CCcCccCCCHHHHHHHHhcCCceE
Q 036911 206 HVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVL-EGLVEEAKVDW----FNLPYYAPSPEEVRHVIQTEGSFN 273 (359)
Q Consensus 206 ~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~-eGli~~e~~d~----f~~P~y~~s~~E~~~~i~~~Gsf~ 273 (359)
.++++-.-..+ .. ...+.+...|.++.. .| .+++++.. ..--...-|+++..+++++.| |+
T Consensus 159 ~l~l~e~~~~~--~~---~~~~~~~~~~~~~~~~~g-~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 159 ALVLSEKFSFE--DA---KVGELLFNMHHDFKRANG-YSELEISQKRSMLENVMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred EEEEEEecCCC--cc---hhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-ch
Confidence 99998644333 11 122333444544443 45 45544432 111112248999999999999 54
No 22
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.03 E-value=3.7e-08 Score=98.39 Aligned_cols=201 Identities=12% Similarity=0.147 Sum_probs=122.9
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..+..+++ . ...+|+..|+... ..+..++... ... +.
T Consensus 168 g~rVLDIGcG~G~~a~~la~--------~--------~g~~V~giDlS~~-----------~l~~A~~~~~-~l~---v~ 216 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAE--------H--------YGVSVVGVTISAE-----------QQKLAQERCA-GLP---VE 216 (383)
T ss_pred CCEEEEeCCCccHHHHHHHH--------H--------CCCEEEEEeCCHH-----------HHHHHHHHhc-cCe---EE
Confidence 56999999999998887752 2 1257888887521 1111111111 101 11
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
...+++.. + ++++|.|+|...++|+.. +++..+++.-.+-|+|||++++.
T Consensus 217 ~~~~D~~~-l--~~~fD~Ivs~~~~ehvg~---------------------------~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 217 IRLQDYRD-L--NGQFDRIVSVGMFEHVGP---------------------------KNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EEECchhh-c--CCCCCEEEEeCchhhCCh---------------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 22345432 2 579999999999988632 23446888999999999999999
Q ss_pred EecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCc-cCCCHHHHHHHHhcCCceEEeEEEEEeecCCCCCC
Q 036911 211 IIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPY-YAPSPEEVRHVIQTEGSFNIRRFDIHTVDWDANKD 289 (359)
Q Consensus 211 ~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~-y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~~~~~~ 289 (359)
.++.+.. .. ....-++.+.+|- +.|+++++.+..+ .| |+|..++.+..
T Consensus 267 ~i~~~~~--~~--------------------~~~~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~d~~~~~~------- 315 (383)
T PRK11705 267 TIGSNKT--DT--------------------NVDPWINKYIFPNGCLPSVRQIAQASE-GL-FVMEDWHNFGA------- 315 (383)
T ss_pred EccCCCC--CC--------------------CCCCCceeeecCCCcCCCHHHHHHHHH-CC-cEEEEEecChh-------
Confidence 8887651 00 0111233445563 6799999999876 35 88877664321
Q ss_pred CCCcccccccccchhHHHHHHHHHhH--HHHHhhcChhHHHHHHHHHHHHHHHHHhhCCCCEEEEEEE
Q 036911 290 DGSKSLTSGRHTRGKNIAKSIRAVSE--SMLASHFGEEIMDDLFERLAKKISEYLEFAPGHSTTMVIS 355 (359)
Q Consensus 290 ~~~~~~~~d~~~~~~~~~~~~Ra~~e--p~l~~h~~~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~ 355 (359)
.|++++..|.+.+-. +-+.+-+|++. -..++-|-...+..+........+++++
T Consensus 316 -----------hy~~TL~~W~~~f~~~~~~~~~~~~~~~-~r~w~~yl~~~~~~F~~~~~~~~q~~~~ 371 (383)
T PRK11705 316 -----------DYDRTLMAWHENFEAAWPELADNYSERF-YRMWRYYLLSCAGAFRARDIQLWQVVFS 371 (383)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 245555555554443 22334455543 3456777666666677777777777543
No 23
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.02 E-value=1e-08 Score=93.30 Aligned_cols=167 Identities=17% Similarity=0.204 Sum_probs=99.4
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
...+|+|+|||+|..+..+++.. ++..+++..|+.. ......+.......+..+.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~--------------~~~~~~~~iD~~~-----------~~~~~~~~~~~~~~~i~~~ 93 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA--------------PDRGKVTGVDFSS-----------EMLEVAKKKSELPLNIEFI 93 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc--------------CCCceEEEEECCH-----------HHHHHHHHHhccCCCceEE
Confidence 46899999999999888776332 1126788888631 1111111111111112233
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
.+++.+..++++++|+++++..+|+..+.. .+|+...+.|+|||++++
T Consensus 94 ---~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~-----------------------------~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 94 ---QADAEALPFEDNSFDAVTIAFGLRNVTDIQ-----------------------------KALREMYRVLKPGGRLVI 141 (223)
T ss_pred ---ecchhcCCCCCCcEEEEEEeeeeCCcccHH-----------------------------HHHHHHHHHcCCCcEEEE
Confidence 367777778888999999999999865522 378888999999999998
Q ss_pred EEecCCCCCCCCchhHHHHHHHHHHH-HHH--hccchhhhhccCC----cCccCCCHHHHHHHHhcCCceEEeEEEEEe
Q 036911 210 SIIGNDRKPGDPRCTGWELLGVTLND-MVL--EGLVEEAKVDWFN----LPYYAPSPEEVRHVIQTEGSFNIRRFDIHT 281 (359)
Q Consensus 210 ~~~g~~~~~~~~~~~~~~~l~~al~~-mv~--eGli~~e~~d~f~----~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~ 281 (359)
....... .. .+..+.+.+.. |.. .+..... .+.+. ....+++.+|++.++++.| |++...+...
T Consensus 142 ~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 212 (223)
T TIGR01934 142 LEFSKPA--NA----LLKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FEEVRYRSLT 212 (223)
T ss_pred EEecCCC--ch----hhHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccceeeeee
Confidence 7664433 21 12222222211 110 1111111 11111 0123579999999999999 9988877654
No 24
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.01 E-value=7.3e-10 Score=86.69 Aligned_cols=95 Identities=23% Similarity=0.309 Sum_probs=64.6
Q ss_pred EeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecccC
Q 036911 55 ADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGIPG 134 (359)
Q Consensus 55 aDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~g 134 (359)
||+|||+|.++..+.+. +..+++..|... ......++..... ...+. .+
T Consensus 1 LdiG~G~G~~~~~l~~~----------------~~~~v~~~D~~~-----------~~~~~~~~~~~~~-~~~~~---~~ 49 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR----------------GGASVTGIDISE-----------EMLEQARKRLKNE-GVSFR---QG 49 (95)
T ss_dssp EEET-TTSHHHHHHHHT----------------TTCEEEEEES-H-----------HHHHHHHHHTTTS-TEEEE---ES
T ss_pred CEecCcCCHHHHHHHhc----------------cCCEEEEEeCCH-----------HHHHHHHhccccc-Cchhe---ee
Confidence 79999999999888722 238888888642 2222222222111 11233 36
Q ss_pred CcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 135 SFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 135 sFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
++....||++|+|+++++.++||+.+ ...+++..++-|||||++++
T Consensus 50 d~~~l~~~~~sfD~v~~~~~~~~~~~-----------------------------~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 50 DAEDLPFPDNSFDVVFSNSVLHHLED-----------------------------PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp BTTSSSS-TT-EEEEEEESHGGGSSH-----------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred hHHhCccccccccccccccceeeccC-----------------------------HHHHHHHHHHHcCcCeEEeC
Confidence 88889999999999999999999822 34589999999999999986
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.99 E-value=1.7e-09 Score=105.10 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=92.6
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..+..++ .. .+ -.|+.-|.. -.+-.-|+. .+...+.. ..+.+
T Consensus 122 g~~VLDvGCG~G~~~~~~~--------~~-------g~-~~v~GiDpS-~~ml~q~~~-------~~~~~~~~-~~v~~- 175 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRML--------GH-------GA-KSLVGIDPT-VLFLCQFEA-------VRKLLDND-KRAIL- 175 (314)
T ss_pred CCEEEEeccCCcHHHHHHH--------Hc-------CC-CEEEEEcCC-HHHHHHHHH-------HHHHhccC-CCeEE-
Confidence 4799999999999877665 21 12 357777743 222111111 11111111 12221
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
.++++... .+..++|+|+|+.+|||+.+.. .+|+.-++-|+|||.|++.
T Consensus 176 -~~~~ie~l-p~~~~FD~V~s~gvL~H~~dp~-----------------------------~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 176 -EPLGIEQL-HELYAFDTVFSMGVLYHRKSPL-----------------------------EHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred -EECCHHHC-CCCCCcCEEEEcchhhccCCHH-----------------------------HHHHHHHHhcCCCCEEEEE
Confidence 23455433 3346899999999999975422 3788889999999999998
Q ss_pred EecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEE
Q 036911 211 IIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIH 280 (359)
Q Consensus 211 ~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~ 280 (359)
.+..+.. ... .+...+.+..+...++.||.+++..++++.| |+..++...
T Consensus 225 tl~i~g~-~~~------------------~l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~~ 274 (314)
T TIGR00452 225 TLVIDGD-LNT------------------VLVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILDV 274 (314)
T ss_pred EEEecCc-ccc------------------ccCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEec
Confidence 7654331 100 0111122233444567899999999999999 998776543
No 26
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.99 E-value=8e-09 Score=95.01 Aligned_cols=167 Identities=17% Similarity=0.202 Sum_probs=100.1
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh---CCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK---GSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~---~~~~~~~ 127 (359)
..+|+|+|||+|..+..++... ++..+++..|+..+ .....++.. +...+..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~-----------~~~~a~~~~~~~~~~~~~~ 106 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEG-----------MLAVGREKLRDLGLSGNVE 106 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHH-----------HHHHHHHhhcccccccCeE
Confidence 5799999999999888776332 12578899998531 111111111 1111122
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
|+ .+++....++++++|++++++.+|++++.+ .+|+...+-|+|||.+
T Consensus 107 ~~---~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~-----------------------------~~l~~~~~~L~~gG~l 154 (239)
T PRK00216 107 FV---QGDAEALPFPDNSFDAVTIAFGLRNVPDID-----------------------------KALREMYRVLKPGGRL 154 (239)
T ss_pred EE---ecccccCCCCCCCccEEEEecccccCCCHH-----------------------------HHHHHHHHhccCCcEE
Confidence 32 357766667788999999999999976644 3788889999999999
Q ss_pred EEEEecCCCCCCCCchhHHHHHHHHHHH-HHH-hcc-chh--hhhccC-CcCccCCCHHHHHHHHhcCCceEEeEEEEEe
Q 036911 208 LLSIIGNDRKPGDPRCTGWELLGVTLND-MVL-EGL-VEE--AKVDWF-NLPYYAPSPEEVRHVIQTEGSFNIRRFDIHT 281 (359)
Q Consensus 208 ~~~~~g~~~~~~~~~~~~~~~l~~al~~-mv~-eGl-i~~--e~~d~f-~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~ 281 (359)
++....... . ..+..+...+.. +.. -+. ... +....+ +.--.+++.+++..++++.| |++.+...+.
T Consensus 155 i~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 227 (239)
T PRK00216 155 VILEFSKPT--N----PPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAG-FERVRYRNLT 227 (239)
T ss_pred EEEEecCCC--c----hHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCC-Cceeeeeeee
Confidence 888766554 1 112222222111 000 000 000 000000 00024579999999999999 9988877654
No 27
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.97 E-value=1.1e-08 Score=100.32 Aligned_cols=148 Identities=20% Similarity=0.182 Sum_probs=95.6
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..++.+++.. +..+++..|+..+ .....++.... .+--+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~~-----------mL~~A~~k~~~-~~i~~-- 164 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSPH-----------QLAKAKQKEPL-KECKI-- 164 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCHH-----------HHHHHHHhhhc-cCCeE--
Confidence 5799999999999888776322 2367888887421 11111111110 01122
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
+.++.....++++++|+++++.++|++.+.. ..|+.-.+-|+|||++++.
T Consensus 165 -i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~-----------------------------~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 165 -IEGDAEDLPFPTDYADRYVSAGSIEYWPDPQ-----------------------------RGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred -EeccHHhCCCCCCceeEEEEcChhhhCCCHH-----------------------------HHHHHHHHhcCCCcEEEEE
Confidence 4467777788899999999999999865422 3677889999999999886
Q ss_pred EecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEEeecC
Q 036911 211 IIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDW 284 (359)
Q Consensus 211 ~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~ 284 (359)
.....+ .| +..-+. + .-..+++.+|+.+++++.| |+..+++.....|
T Consensus 215 ~~~~p~--------~~--~~r~~~-------------~---~~~~~~t~eEl~~lL~~aG-F~~V~i~~i~~~~ 261 (340)
T PLN02490 215 GPVHPT--------FW--LSRFFA-------------D---VWMLFPKEEEYIEWFTKAG-FKDVKLKRIGPKW 261 (340)
T ss_pred EecCcc--------hh--HHHHhh-------------h---hhccCCCHHHHHHHHHHCC-CeEEEEEEcChhh
Confidence 432222 00 000000 0 0113579999999999999 9988877655444
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.95 E-value=3.8e-09 Score=97.06 Aligned_cols=143 Identities=16% Similarity=0.203 Sum_probs=92.5
Q ss_pred eEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCeEE
Q 036911 53 KIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPCFI 129 (359)
Q Consensus 53 ~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~f~ 129 (359)
+|+|+|||+|..+..+++. + |..+++..|+..+ .....+. ..+...+.-|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~--------~-------~~~~v~gid~s~~-----------~~~~a~~~~~~~gl~~~i~~~ 55 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAER--------H-------PHLQLHGYTISPE-----------QAEVGRERIRALGLQGRIRIF 55 (224)
T ss_pred eEEEECCCCCHHHHHHHHH--------C-------CCCEEEEEECCHH-----------HHHHHHHHHHhcCCCcceEEE
Confidence 7999999999988766522 1 3467888887421 1111111 11211111232
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
.+++...+++ +++|+++|..++|++.+. ..+|+.-++-|+|||++++
T Consensus 56 ---~~d~~~~~~~-~~fD~I~~~~~l~~~~~~-----------------------------~~~l~~~~~~LkpgG~l~i 102 (224)
T smart00828 56 ---YRDSAKDPFP-DTYDLVFGFEVIHHIKDK-----------------------------MDLFSNISRHLKDGGHLVL 102 (224)
T ss_pred ---ecccccCCCC-CCCCEeehHHHHHhCCCH-----------------------------HHHHHHHHHHcCCCCEEEE
Confidence 2455444444 689999999999996542 2488899999999999999
Q ss_pred EEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEEee
Q 036911 210 SIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTV 282 (359)
Q Consensus 210 ~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~ 282 (359)
..+..+. .. + +..+ ..+.|.++.+++.+.+++.| |++...+.+..
T Consensus 103 ~~~~~~~--~~-------------------~-~~~~-----~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~~~ 147 (224)
T smart00828 103 ADFIANL--LS-------------------A-IEHE-----ETTSYLVTREEWAELLARNN-LRVVEGVDASL 147 (224)
T ss_pred EEccccc--Cc-------------------c-cccc-----ccccccCCHHHHHHHHHHCC-CeEEEeEECcH
Confidence 8764432 00 0 1111 23456899999999999999 99988776543
No 29
>PRK06202 hypothetical protein; Provisional
Probab=98.81 E-value=2.3e-07 Score=86.01 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=94.4
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeE
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCF 128 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f 128 (359)
.+..+|+|+|||+|.++..+.+.. ++. .|..+++..|+.. ......++.... .+--+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~----~~~-------g~~~~v~gvD~s~-----------~~l~~a~~~~~~-~~~~~ 115 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA----RRD-------GLRLEVTAIDPDP-----------RAVAFARANPRR-PGVTF 115 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH----HhC-------CCCcEEEEEcCCH-----------HHHHHHHhcccc-CCCeE
Confidence 346799999999999888766332 111 2447899999752 121111111110 01122
Q ss_pred EecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 129 IAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
..+.. ....++++++|+++|+.+|||+.+. +...+|+.-++-++ |.++
T Consensus 116 ~~~~~---~~l~~~~~~fD~V~~~~~lhh~~d~---------------------------~~~~~l~~~~r~~~--~~~~ 163 (232)
T PRK06202 116 RQAVS---DELVAEGERFDVVTSNHFLHHLDDA---------------------------EVVRLLADSAALAR--RLVL 163 (232)
T ss_pred EEEec---ccccccCCCccEEEECCeeecCChH---------------------------HHHHHHHHHHHhcC--eeEE
Confidence 22222 1223477899999999999998651 12247777666665 5666
Q ss_pred EEEecCCCCCCCCchhHHHHHHHHHHHHHHhc-cchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEEeecC
Q 036911 209 LSIIGNDRKPGDPRCTGWELLGVTLNDMVLEG-LVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDW 284 (359)
Q Consensus 209 ~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eG-li~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~ 284 (359)
+.-+.+.. . .+... .........| .+..+. ...-.-+++.+|+.+.+++ | |+|.+.-.|...|
T Consensus 164 i~dl~~~~--~-----~~~~~-~~~~~~~~~~~~~~~d~---~~s~~~~~~~~el~~ll~~-G-f~~~~~~~~~~~~ 227 (232)
T PRK06202 164 HNDLIRSR--L-----AYALF-WAGTRLLSRSSFVHTDG---LLSVRRSYTPAELAALAPQ-G-WRVERQWPFRYLL 227 (232)
T ss_pred EeccccCH--H-----HHHHH-HHHHHHhccCceeeccc---hHHHHhhcCHHHHHHHhhC-C-CeEEeccceeeEE
Confidence 66665543 1 11111 1111111112 111211 1112357899999999998 7 9998888776554
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.80 E-value=5.1e-08 Score=88.54 Aligned_cols=135 Identities=19% Similarity=0.244 Sum_probs=85.2
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~ 127 (359)
..+|+|+|||+|.+++.+++ + ..+|+.-|+..+ ..+..+. ..+. .+
T Consensus 31 ~~~vLDiGcG~G~~a~~La~--------~---------g~~V~gvD~S~~-----------~i~~a~~~~~~~~~--~~- 79 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAA--------N---------GFDVTAWDKNPM-----------SIANLERIKAAENL--DN- 79 (197)
T ss_pred CCcEEEECCCCCHHHHHHHH--------C---------CCEEEEEeCCHH-----------HHHHHHHHHHHcCC--Cc-
Confidence 57999999999999988762 1 267888887521 1111111 1111 11
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
+..+.+++....+ ++++|+|+|+.++||++. .+...+++.-++-|+|||++
T Consensus 80 -v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~---------------------------~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 80 -LHTAVVDLNNLTF-DGEYDFILSTVVLMFLEA---------------------------KTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred -ceEEecChhhCCc-CCCcCEEEEecchhhCCH---------------------------HHHHHHHHHHHHHcCCCcEE
Confidence 2223345544334 467999999999999753 12335888999999999996
Q ss_pred EE-EEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEE
Q 036911 208 LL-SIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFD 278 (359)
Q Consensus 208 ~~-~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e 278 (359)
++ ..+...+ . + . .-+ |.+..+.+|+.+.++ | |++.+.+
T Consensus 131 ~~~~~~~~~~--~-~---------------------~-----~~~-~~~~~~~~el~~~~~--~-~~~~~~~ 169 (197)
T PRK11207 131 LIVAAMDTAD--Y-P---------------------C-----TVG-FPFAFKEGELRRYYE--G-WEMVKYN 169 (197)
T ss_pred EEEEEecCCC--C-C---------------------C-----CCC-CCCccCHHHHHHHhC--C-CeEEEee
Confidence 55 4433322 0 0 0 001 336679999999887 6 8887764
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.76 E-value=8.5e-08 Score=90.98 Aligned_cols=151 Identities=16% Similarity=0.140 Sum_probs=93.0
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~ 126 (359)
...+|+|+|||+|..++.+...+ .+..+|+..|... ......++ ..+.. +-
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~--------------g~~~~v~gvD~s~-----------~~l~~A~~~~~~~g~~-~v 130 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRV--------------GPTGKVIGVDMTP-----------EMLAKARANARKAGYT-NV 130 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEECCCH-----------HHHHHHHHHHHHcCCC-CE
Confidence 35799999999998877655222 2446788888742 11122221 11211 12
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
.| +.+++....++++++|+++|+.++||..+.+ ..|+.-.+-|+|||+
T Consensus 131 ~~---~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~-----------------------------~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 131 EF---RLGEIEALPVADNSVDVIISNCVINLSPDKE-----------------------------RVFKEAFRVLKPGGR 178 (272)
T ss_pred EE---EEcchhhCCCCCCceeEEEEcCcccCCCCHH-----------------------------HHHHHHHHHcCCCcE
Confidence 23 3367777677889999999999999965433 267777999999999
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEE
Q 036911 207 VLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDI 279 (359)
Q Consensus 207 l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~ 279 (359)
++++-+.... ..+ +.+...+. +. .| ......+.+|+..++++.| |...++..
T Consensus 179 l~i~~~~~~~--~~~-----~~~~~~~~-~~-~~-----------~~~~~~~~~e~~~~l~~aG-f~~v~i~~ 230 (272)
T PRK11873 179 FAISDVVLRG--ELP-----EEIRNDAE-LY-AG-----------CVAGALQEEEYLAMLAEAG-FVDITIQP 230 (272)
T ss_pred EEEEEeeccC--CCC-----HHHHHhHH-HH-hc-----------cccCCCCHHHHHHHHHHCC-CCceEEEe
Confidence 9998664433 111 11111111 10 01 1113457889999999988 88776643
No 32
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.74 E-value=3.1e-07 Score=84.34 Aligned_cols=155 Identities=20% Similarity=0.319 Sum_probs=98.9
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
....++|||||-|+.+..+...=| -+++..|.... +.+.+...+.. .....|.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~v----------------ekli~~DtS~~----------M~~s~~~~qdp-~i~~~~~ 124 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGV----------------EKLIMMDTSYD----------MIKSCRDAQDP-SIETSYF 124 (325)
T ss_pred hCcceeecccchhhhhHHHHhcch----------------hheeeeecchH----------HHHHhhccCCC-ceEEEEE
Confidence 367899999999998877763321 45555665421 22111110000 0012222
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
. |+=....|-++|+|+++|+.++||..++|. .+. .....|||.|.++-
T Consensus 125 v---~DEE~Ldf~ens~DLiisSlslHW~NdLPg----------------------------~m~-~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 125 V---GDEEFLDFKENSVDLIISSLSLHWTNDLPG----------------------------SMI-QCKLALKPDGLFIA 172 (325)
T ss_pred e---cchhcccccccchhhhhhhhhhhhhccCch----------------------------HHH-HHHHhcCCCccchh
Confidence 2 344456689999999999999999999996 133 45899999999999
Q ss_pred EEecCCCCCCCCchhHHHH-HHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEE
Q 036911 210 SIIGNDRKPGDPRCTGWEL-LGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDI 279 (359)
Q Consensus 210 ~~~g~~~~~~~~~~~~~~~-l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~ 279 (359)
+++|-++ ++++ .+--|.+|-.+|=|++- ..|+ -...++-.++...| |....+..
T Consensus 173 smlggdT--------LyELR~slqLAelER~GGiSph-----iSPf--~qvrDiG~LL~rAG-F~m~tvDt 227 (325)
T KOG2940|consen 173 SMLGGDT--------LYELRCSLQLAELEREGGISPH-----ISPF--TQVRDIGNLLTRAG-FSMLTVDT 227 (325)
T ss_pred HHhcccc--------HHHHHHHhhHHHHHhccCCCCC-----cChh--hhhhhhhhHHhhcC-cccceecc
Confidence 9999887 3432 23345677777765553 2232 24556778888888 87655543
No 33
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.73 E-value=1.3e-06 Score=83.41 Aligned_cols=152 Identities=16% Similarity=0.223 Sum_probs=82.0
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~ 127 (359)
-.+|+|+|||-|..++.+++. | ..+|.-..|..+ -....++ ..|.. ..+
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~--------~--------g~~v~gitlS~~-----------Q~~~a~~~~~~~gl~-~~v 114 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAER--------Y--------GCHVTGITLSEE-----------QAEYARERIREAGLE-DRV 114 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHH--------H----------EEEEEES-HH-----------HHHHHHHHHHCSTSS-STE
T ss_pred CCEEEEeCCCccHHHHHHHHH--------c--------CcEEEEEECCHH-----------HHHHHHHHHHhcCCC-Cce
Confidence 579999999999999888733 2 256666665422 1111111 12221 122
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
-+. -.+|.+ ++. ++|-|+|.-++.-+. .+++..|++..++-|+|||++
T Consensus 115 ~v~--~~D~~~--~~~-~fD~IvSi~~~Ehvg---------------------------~~~~~~~f~~~~~~LkpgG~~ 162 (273)
T PF02353_consen 115 EVR--LQDYRD--LPG-KFDRIVSIEMFEHVG---------------------------RKNYPAFFRKISRLLKPGGRL 162 (273)
T ss_dssp EEE--ES-GGG------S-SEEEEESEGGGTC---------------------------GGGHHHHHHHHHHHSETTEEE
T ss_pred EEE--Eeeccc--cCC-CCCEEEEEechhhcC---------------------------hhHHHHHHHHHHHhcCCCcEE
Confidence 222 246533 333 999999965554431 356778999999999999999
Q ss_pred EEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCc-cCCCHHHHHHHHhcCCceEEeEEEEE
Q 036911 208 LLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPY-YAPSPEEVRHVIQTEGSFNIRRFDIH 280 (359)
Q Consensus 208 ~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~-y~~s~~E~~~~i~~~Gsf~i~~~e~~ 280 (359)
++..++..+ . + . ..+.-.+.+-+..+.+|- +.|+.+++...++..| |+|...+.+
T Consensus 163 ~lq~i~~~~--~-~---~-----------~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~-l~v~~~~~~ 218 (273)
T PF02353_consen 163 VLQTITHRD--P-P---Y-----------HAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG-LEVEDVENL 218 (273)
T ss_dssp EEEEEEE----H-H---H-----------HHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT--EEEEEEE-
T ss_pred EEEeccccc--c-c---c-----------hhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC-EEEEEEEEc
Confidence 999888766 1 0 0 000000001122233444 5689999999888888 998776654
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.72 E-value=1.5e-07 Score=85.29 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=84.2
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~ 127 (359)
+.+|+|+|||+|.+++.+++ + ..+|+.-|+..+ ....++. ..+. .
T Consensus 31 ~~~vLDiGcG~G~~a~~la~--------~---------g~~V~~iD~s~~-----------~l~~a~~~~~~~~~--~-- 78 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL--------A---------GYDVRAWDHNPA-----------SIASVLDMKARENL--P-- 78 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCHH-----------HHHHHHHHHHHhCC--C--
Confidence 57999999999999998862 1 267888887521 1111111 1111 1
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
+....+++....+ ++++|+++|+.++||++. .++..+++..++-|+|||++
T Consensus 79 -v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~---------------------------~~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 79 -LRTDAYDINAAAL-NEDYDFIFSTVVFMFLQA---------------------------GRVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred -ceeEeccchhccc-cCCCCEEEEecccccCCH---------------------------HHHHHHHHHHHHHhCCCcEE
Confidence 1122233322223 468999999999999753 12335888889999999996
Q ss_pred EEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEE
Q 036911 208 LLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDI 279 (359)
Q Consensus 208 ~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~ 279 (359)
++...-..+ ..+ .| ..|-|-.+++|+++.++ + |++.+.+.
T Consensus 130 li~~~~~~~--~~~-----------------~~----------~~~~~~~~~~el~~~f~--~-~~~~~~~e 169 (195)
T TIGR00477 130 LIVAAMDTA--DYP-----------------CH----------MPFSFTFKEDELRQYYA--D-WELLKYNE 169 (195)
T ss_pred EEEEecccC--CCC-----------------CC----------CCcCccCCHHHHHHHhC--C-CeEEEeec
Confidence 655432222 100 01 11236789999999885 3 88877763
No 35
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.71 E-value=3.4e-07 Score=87.13 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=65.3
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
...+|+|+|||+|..+..+.+.+ . .....+++..|+..+ ......+.. .+..|+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~----~--------~~~~~~v~giD~s~~-----------~l~~A~~~~---~~~~~~ 138 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL----P--------EITTMQLFGLDISKV-----------AIKYAAKRY---PQVTFC 138 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc----c--------cccCCeEEEECCCHH-----------HHHHHHHhC---CCCeEE
Confidence 35789999999999988876432 0 011257888997521 111111111 122343
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
. ++..+.+|+++++|+|+|..+ |. +++.-++.|+|||++++
T Consensus 139 ~---~d~~~lp~~~~sfD~I~~~~~-------~~-----------------------------~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 139 V---ASSHRLPFADQSLDAIIRIYA-------PC-----------------------------KAEELARVVKPGGIVIT 179 (272)
T ss_pred E---eecccCCCcCCceeEEEEecC-------CC-----------------------------CHHHHHhhccCCCEEEE
Confidence 3 466677889999999998654 32 22344678999999999
Q ss_pred EEecCCC
Q 036911 210 SIIGNDR 216 (359)
Q Consensus 210 ~~~g~~~ 216 (359)
..++...
T Consensus 180 ~~p~~~~ 186 (272)
T PRK11088 180 VTPGPRH 186 (272)
T ss_pred EeCCCcc
Confidence 8877655
No 36
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.71 E-value=1.1e-07 Score=88.45 Aligned_cols=168 Identities=13% Similarity=0.160 Sum_probs=106.3
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh---CCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK---GSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~---~~~~~~ 126 (359)
...+++|.+||||..|+.+++.+-.+- + .-+-+|+..|+.. ......++.. +-....
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~-------~--~~~~~V~v~Dinp-----------~mL~vgkqRa~~~~l~~~~ 159 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQF-------G--DRESKVTVLDINP-----------HMLAVGKQRAKKRPLKASS 159 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhcccc-------C--CCCceEEEEeCCH-----------HHHHHHHHHHhhcCCCcCC
Confidence 468999999999999999886652111 1 1236777778632 2222222211 111111
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
+. .-+.|+....+||++++|...+++.+--+.+++. -|+--.+.|||||+
T Consensus 160 ~~-~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k-----------------------------~l~EAYRVLKpGGr 209 (296)
T KOG1540|consen 160 RV-EWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK-----------------------------ALREAYRVLKPGGR 209 (296)
T ss_pred ce-EEEeCCcccCCCCCCcceeEEEecceecCCCHHH-----------------------------HHHHHHHhcCCCcE
Confidence 12 1245788999999999999999999998777665 34456999999999
Q ss_pred EEEEEecCCCCCCCCc-----hhHHH---HHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeE
Q 036911 207 VLLSIIGNDRKPGDPR-----CTGWE---LLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRR 276 (359)
Q Consensus 207 l~~~~~g~~~~~~~~~-----~~~~~---~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~ 276 (359)
+.+.-|..-+ ..+. .+.++ .+.+.+......+..=-|-+. -+|+.||+...+++.| |....
T Consensus 210 f~cLeFskv~--~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~miedaG-F~~~~ 278 (296)
T KOG1540|consen 210 FSCLEFSKVE--NEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDAG-FSSVN 278 (296)
T ss_pred EEEEEccccc--cHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHcC-Ccccc
Confidence 9999988765 2222 11222 223333333322222112122 4789999999999999 87765
No 37
>PRK05785 hypothetical protein; Provisional
Probab=98.69 E-value=6.2e-07 Score=83.28 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=67.1
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||||.++..+.+.. ..+|+.-|+..+ ..+..+.. ..+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~----------------~~~v~gvD~S~~-----------Ml~~a~~~------~~~-- 96 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF----------------KYYVVALDYAEN-----------MLKMNLVA------DDK-- 96 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc----------------CCEEEEECCCHH-----------HHHHHHhc------cce--
Confidence 5799999999999888765221 257888887421 11111111 112
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
+.+++....|+++|+|+++|+++|||+.+.+. .|+.-++.|+|+ +++.
T Consensus 97 -~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~-----------------------------~l~e~~RvLkp~--~~il 144 (226)
T PRK05785 97 -VVGSFEALPFRDKSFDVVMSSFALHASDNIEK-----------------------------VIAEFTRVSRKQ--VGFI 144 (226)
T ss_pred -EEechhhCCCCCCCEEEEEecChhhccCCHHH-----------------------------HHHHHHHHhcCc--eEEE
Confidence 24688888899999999999999999776543 677788999993 3233
Q ss_pred EecCCC
Q 036911 211 IIGNDR 216 (359)
Q Consensus 211 ~~g~~~ 216 (359)
.++..+
T Consensus 145 e~~~p~ 150 (226)
T PRK05785 145 AMGKPD 150 (226)
T ss_pred EeCCCC
Confidence 444443
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.68 E-value=1.1e-07 Score=97.24 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=85.2
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|.+|..+.+. + .+++..|+.. ..........+....-.|+.
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~--------~---------~~v~giD~s~-----------~~l~~a~~~~~~~~~i~~~~ 89 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK--------A---------GQVIALDFIE-----------SVIKKNESINGHYKNVKFMC 89 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh--------C---------CEEEEEeCCH-----------HHHHHHHHHhccCCceEEEE
Confidence 459999999999999987622 1 4677777532 11111111111111223433
Q ss_pred cccCCcc--cCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 131 GIPGSFY--GRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 131 ~v~gsFy--~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
+++. ...+|++++|+|+|+.++||+++. ++..+|+..++-|+|||+++
T Consensus 90 ---~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~---------------------------~~~~~l~~~~r~Lk~gG~l~ 139 (475)
T PLN02336 90 ---ADVTSPDLNISDGSVDLIFSNWLLMYLSDK---------------------------EVENLAERMVKWLKVGGYIF 139 (475)
T ss_pred ---ecccccccCCCCCCEEEEehhhhHHhCCHH---------------------------HHHHHHHHHHHhcCCCeEEE
Confidence 3443 345788999999999999998651 23358888899999999998
Q ss_pred EEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCC
Q 036911 209 LSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEG 270 (359)
Q Consensus 209 ~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~G 270 (359)
+.-..-.. . | ....-.-|..+++..++..++.++|
T Consensus 140 ~~d~~~~~--~--------------------~-----~~~~~~~~~~~~~~~~~~~~f~~~~ 174 (475)
T PLN02336 140 FRESCFHQ--S--------------------G-----DSKRKNNPTHYREPRFYTKVFKECH 174 (475)
T ss_pred EEeccCCC--C--------------------C-----cccccCCCCeecChHHHHHHHHHhe
Confidence 86432221 0 0 0111134667788999999998876
No 39
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.68 E-value=1e-08 Score=82.05 Aligned_cols=99 Identities=23% Similarity=0.253 Sum_probs=49.6
Q ss_pred EeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecccC
Q 036911 55 ADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGIPG 134 (359)
Q Consensus 55 aDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~g 134 (359)
+|+|||+|..+..+++.. |..+++..|+... + +...++++...... ....+.....
T Consensus 1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~~-~------l~~a~~~~~~~~~~--~~~~~~~~~~ 56 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISPS-M------LERARERLAELGND--NFERLRFDVL 56 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------------EEEEEEEESSSS-T------TSTTCCCHHHCT-----EEEEE--SS
T ss_pred CEeCccChHHHHHHHHhC---------------CCCEEEEEECCHH-H------HHHHHHHhhhcCCc--ceeEEEeecC
Confidence 699999999999888432 4599999998642 1 10000111111100 1122332232
Q ss_pred CcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 135 SFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 135 sFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
+.... .+++++|+|+++.+|||+.+ +..+|+.-++-|+|||+|
T Consensus 57 ~~~~~-~~~~~fD~V~~~~vl~~l~~-----------------------------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 57 DLFDY-DPPESFDLVVASNVLHHLED-----------------------------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---C-CC----SEEEEE-TTS--S------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred Chhhc-ccccccceehhhhhHhhhhh-----------------------------HHHHHHHHHHHcCCCCCC
Confidence 33222 22379999999999999833 335888999999999986
No 40
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.67 E-value=7.4e-07 Score=86.16 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=92.0
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
...+|+|+|||+|..++.++ +++ |..+++.-|+|. . ++...... ...+.. . -+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~--------~~~-------p~~~~~~~D~~~--~------~~~a~~~~-~~~gl~-~--rv 201 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAML--------KHF-------PELDSTILNLPG--A------IDLVNENA-AEKGVA-D--RM 201 (306)
T ss_pred CCCEEEEeCCchhHHHHHHH--------HHC-------CCCEEEEEecHH--H------HHHHHHHH-HhCCcc-c--eE
Confidence 45799999999999888777 332 668888889862 1 11111111 111211 1 23
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
..++++|+...+|+ .|+++.+..+|-..+ . +...+|+.-++.|+|||++++
T Consensus 202 ~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~--~-------------------------~~~~il~~~~~~L~pgG~l~i 252 (306)
T TIGR02716 202 RGIAVDIYKESYPE--ADAVLFCRILYSANE--Q-------------------------LSTIMCKKAFDAMRSGGRLLI 252 (306)
T ss_pred EEEecCccCCCCCC--CCEEEeEhhhhcCCh--H-------------------------HHHHHHHHHHHhcCCCCEEEE
Confidence 34568998766665 499988888883222 1 122478888999999999999
Q ss_pred EEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeE
Q 036911 210 SIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRR 276 (359)
Q Consensus 210 ~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~ 276 (359)
.-+..++. ..+ .+..+...+.. -|.. ..+..+++.+|+.+++++.| |+..+
T Consensus 253 ~d~~~~~~-~~~---~~~~~~~~~~~---~~~~--------~~~~~~~~~~e~~~ll~~aG-f~~v~ 303 (306)
T TIGR02716 253 LDMVIDDP-ENP---NFDYLSHYILG---AGMP--------FSVLGFKEQARYKEILESLG-YKDVT 303 (306)
T ss_pred EEeccCCC-CCc---hhhHHHHHHHH---cccc--------cccccCCCHHHHHHHHHHcC-CCeeE
Confidence 86644431 111 11222222111 1211 01124566899999999999 87544
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.67 E-value=1.7e-07 Score=89.90 Aligned_cols=136 Identities=20% Similarity=0.264 Sum_probs=85.4
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh-CCCCCCeEE
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK-GSNFGPCFI 129 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~-~~~~~~~f~ 129 (359)
+.+|+|+|||+|.+++.+++ . ..+|+.-|.... ....+++.. .... ++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~--------~---------g~~V~avD~s~~-----------ai~~~~~~~~~~~l-~v-- 169 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL--------L---------GFDVTAVDINQQ-----------SLENLQEIAEKENL-NI-- 169 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH--------C---------CCEEEEEECCHH-----------HHHHHHHHHHHcCC-ce--
Confidence 45999999999999988762 1 267888887421 111111111 0111 11
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
..+.+++.... +++++|+|+|+.++|+++. .++..+|+...+-|+|||++++
T Consensus 170 ~~~~~D~~~~~-~~~~fD~I~~~~vl~~l~~---------------------------~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 170 RTGLYDINSAS-IQEEYDFILSTVVLMFLNR---------------------------ERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred EEEEechhccc-ccCCccEEEEcchhhhCCH---------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence 12223443322 3789999999999999752 1344588899999999999777
Q ss_pred EEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcC-ccCCCHHHHHHHHhcCCceEEeEEE
Q 036911 210 SIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLP-YYAPSPEEVRHVIQTEGSFNIRRFD 278 (359)
Q Consensus 210 ~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P-~y~~s~~E~~~~i~~~Gsf~i~~~e 278 (359)
......+ .. ....| .+..+.+|+++.+.. |+|.+.+
T Consensus 222 v~~~~~~--~~----------------------------~~~~p~~~~~~~~el~~~~~~---~~i~~~~ 258 (287)
T PRK12335 222 VCAMDTE--DY----------------------------PCPMPFSFTFKEGELKDYYQD---WEIVKYN 258 (287)
T ss_pred EEecccc--cC----------------------------CCCCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence 5543332 10 01223 356789999998853 8888774
No 42
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.65 E-value=2.3e-07 Score=84.78 Aligned_cols=142 Identities=22% Similarity=0.253 Sum_probs=95.6
Q ss_pred cchHHHhhHH---HHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcce
Q 036911 15 DTSYANNSKI---QKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQ 91 (359)
Q Consensus 15 ~~sY~~ns~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~ 91 (359)
+.-|.+|+.+ |..+.++++.+|.- ..+.+--|+|+|||||--+..+- .+.-+
T Consensus 20 A~kYt~nsri~~IQ~em~eRaLELLal--------p~~~~~~iLDIGCGsGLSg~vL~-----------------~~Gh~ 74 (270)
T KOG1541|consen 20 APKYTQNSRIVLIQAEMAERALELLAL--------PGPKSGLILDIGCGSGLSGSVLS-----------------DSGHQ 74 (270)
T ss_pred hhhccccceeeeehHHHHHHHHHHhhC--------CCCCCcEEEEeccCCCcchheec-----------------cCCce
Confidence 3468888874 67777666665442 12348899999999997665442 24478
Q ss_pred EEecCCCCCchhhhhhcccchHHH-HHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCC
Q 036911 92 VFLNDLPGNDFNTIFKSLPGFYEK-LKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESG 170 (359)
Q Consensus 92 v~~nDLp~NDFn~lF~~l~~~~~~-~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~ 170 (359)
++--|.. |+..+. +..... --++.+.=| .+.+|++++||-++|-+|+|||=..-+..
T Consensus 75 wiGvDiS-----------psML~~a~~~e~e----gdlil~DMG--~GlpfrpGtFDg~ISISAvQWLcnA~~s~----- 132 (270)
T KOG1541|consen 75 WIGVDIS-----------PSMLEQAVERELE----GDLILCDMG--EGLPFRPGTFDGVISISAVQWLCNADKSL----- 132 (270)
T ss_pred EEeecCC-----------HHHHHHHHHhhhh----cCeeeeecC--CCCCCCCCccceEEEeeeeeeecccCccc-----
Confidence 8888875 222222 211111 112222222 57889999999999999999976643311
Q ss_pred CCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 171 VPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 171 ~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
..+++.+..|+..-...|++|++.|+.+.-..+
T Consensus 133 -------------~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~ 165 (270)
T KOG1541|consen 133 -------------HVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE 165 (270)
T ss_pred -------------cChHHHHHHHhhhhhhhhccCceeEEEecccch
Confidence 124788899999889999999999999975544
No 43
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.63 E-value=3.9e-07 Score=74.08 Aligned_cols=105 Identities=22% Similarity=0.324 Sum_probs=68.7
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh---CCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK---GSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~---~~~~~~~ 127 (359)
..+|+|+|||+|..++.+++.. |..+++.-|+. +...+..++.. +...+-.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~---------------~~~~v~gvD~s-----------~~~~~~a~~~~~~~~~~~~i~ 55 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF---------------PGARVVGVDIS-----------PEMLEIARERAAEEGLSDRIT 55 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH---------------TTSEEEEEESS-----------HHHHHHHHHHHHHTTTTTTEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcC---------------CCCEEEEEeCC-----------HHHHHHHHHHHHhcCCCCCeE
Confidence 3689999999999999888421 45889988974 22222222211 2222233
Q ss_pred EEecccCCc-ccCCCCCCceeEEEecc-cccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 128 FIAGIPGSF-YGRLFPNKSLHFVHSSY-SLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 128 f~~~v~gsF-y~~lfp~~S~d~~~S~~-alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
|+. +++ +..- ....+|+++++. ++|++-.. .+...+|+...+-|+|||
T Consensus 56 ~~~---~d~~~~~~-~~~~~D~v~~~~~~~~~~~~~--------------------------~~~~~~l~~~~~~L~pgG 105 (112)
T PF12847_consen 56 FVQ---GDAEFDPD-FLEPFDLVICSGFTLHFLLPL--------------------------DERRRVLERIRRLLKPGG 105 (112)
T ss_dssp EEE---SCCHGGTT-TSSCEEEEEECSGSGGGCCHH--------------------------HHHHHHHHHHHHHEEEEE
T ss_pred EEE---CccccCcc-cCCCCCEEEECCCccccccch--------------------------hHHHHHHHHHHHhcCCCc
Confidence 443 566 2222 334599999999 77754332 245568999999999999
Q ss_pred eEEEEE
Q 036911 206 HVLLSI 211 (359)
Q Consensus 206 ~l~~~~ 211 (359)
++++..
T Consensus 106 ~lvi~~ 111 (112)
T PF12847_consen 106 RLVINT 111 (112)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999874
No 44
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.57 E-value=1.1e-07 Score=82.20 Aligned_cols=106 Identities=23% Similarity=0.290 Sum_probs=72.5
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~ 126 (359)
+..+|+|+|||+|..+..+.+.+ .|..+++..|+.. ......+. ..+.. +-
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~--------------~~~~~i~gvD~s~-----------~~i~~a~~~~~~~~~~-ni 56 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL--------------NPGAKIIGVDISE-----------EMIEYAKKRAKELGLD-NI 56 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS--------------TTTSEEEEEESSH-----------HHHHHHHHHHHHTTST-TE
T ss_pred CCCEEEEecCcCcHHHHHHHHhc--------------CCCCEEEEEECcH-----------HHHHHhhccccccccc-cc
Confidence 36899999999999998877321 2458899999852 22222222 12221 23
Q ss_pred eEEecccCCcccCC--CCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccC
Q 036911 127 CFIAGIPGSFYGRL--FPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSG 204 (359)
Q Consensus 127 ~f~~~v~gsFy~~l--fp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pG 204 (359)
.|+. +++.+.. ++ +.+|+++++.++||+.+.. .+|+.-.+-|++|
T Consensus 57 ~~~~---~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~-----------------------------~~l~~~~~~lk~~ 103 (152)
T PF13847_consen 57 EFIQ---GDIEDLPQELE-EKFDIIISNGVLHHFPDPE-----------------------------KVLKNIIRLLKPG 103 (152)
T ss_dssp EEEE---SBTTCGCGCSS-TTEEEEEEESTGGGTSHHH-----------------------------HHHHHHHHHEEEE
T ss_pred ceEE---eehhccccccC-CCeeEEEEcCchhhccCHH-----------------------------HHHHHHHHHcCCC
Confidence 4444 5665522 44 8999999999999976633 3788889999999
Q ss_pred ceEEEEEecC
Q 036911 205 GHVLLSIIGN 214 (359)
Q Consensus 205 G~l~~~~~g~ 214 (359)
|.+++.....
T Consensus 104 G~~i~~~~~~ 113 (152)
T PF13847_consen 104 GILIISDPNH 113 (152)
T ss_dssp EEEEEEEEEH
T ss_pred cEEEEEECCh
Confidence 9999998773
No 45
>PRK06922 hypothetical protein; Provisional
Probab=98.56 E-value=2.6e-07 Score=96.83 Aligned_cols=115 Identities=20% Similarity=0.116 Sum_probs=74.6
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh-CCCCCCeEE
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK-GSNFGPCFI 129 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~-~~~~~~~f~ 129 (359)
..+|+|+|||+|..+..+.+ .+ |..+++..|++.+ .....++.. ....+..++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~--------~~-------P~~kVtGIDIS~~-----------MLe~Ararl~~~g~~ie~I 472 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEE--------ET-------EDKRIYGIDISEN-----------VIDTLKKKKQNEGRSWNVI 472 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHH--------hC-------CCCEEEEEECCHH-----------HHHHHHHHhhhcCCCeEEE
Confidence 57999999999988776652 21 5689999998632 222222211 111112233
Q ss_pred ecccCCcccCC--CCCCceeEEEeccccccc-ccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 130 AGIPGSFYGRL--FPNKSLHFVHSSYSLHWL-SQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 130 ~~v~gsFy~~l--fp~~S~d~~~S~~alhWl-s~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
. ++..... |+++++|++++++++||+ +.+|..-. .-..++...+|+.-.+.|+|||+
T Consensus 473 ~---gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~-----------------~f~~edl~kiLreI~RVLKPGGr 532 (677)
T PRK06922 473 K---GDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGK-----------------KFNHEVIKKGLQSAYEVLKPGGR 532 (677)
T ss_pred E---cchHhCccccCCCCEEEEEEchHHHhhhhhcccccc-----------------cccHHHHHHHHHHHHHHcCCCcE
Confidence 3 4554433 788999999999999975 44542110 00135677899999999999999
Q ss_pred EEEEE
Q 036911 207 VLLSI 211 (359)
Q Consensus 207 l~~~~ 211 (359)
+++.-
T Consensus 533 LII~D 537 (677)
T PRK06922 533 IIIRD 537 (677)
T ss_pred EEEEe
Confidence 99974
No 46
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.54 E-value=3.2e-07 Score=83.67 Aligned_cols=140 Identities=14% Similarity=0.057 Sum_probs=80.6
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchh
Q 036911 24 IQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFN 103 (359)
Q Consensus 24 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn 103 (359)
+|+.+.....|.+-........-......+|+|+|||+|..+..+.+.. |..+++..|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~~~---------------p~~~v~gVD~s~---- 74 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAKAN---------------PDINFIGIEVHE---- 74 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHHHC---------------CCccEEEEEech----
Confidence 4555555555555222111111011246799999999999998876322 457899999742
Q ss_pred hhhhcccchHHHHHHhh-CCCCCCeEEecccCCc-c--cCCCCCCceeEEEecccccccccCCCCccccCCCCCCCccee
Q 036911 104 TIFKSLPGFYEKLKEVK-GSNFGPCFIAGIPGSF-Y--GRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHIC 179 (359)
Q Consensus 104 ~lF~~l~~~~~~~~~~~-~~~~~~~f~~~v~gsF-y--~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~ 179 (359)
.....++... .....++.+ +.+++ . .+.++++++|.+++++..+|...... ..
T Consensus 75 -------~~i~~a~~~~~~~~~~~v~~--~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~-~~------------- 131 (202)
T PRK00121 75 -------PGVGKALKKIEEEGLTNLRL--LCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHH-KR------------- 131 (202)
T ss_pred -------HHHHHHHHHHHHcCCCCEEE--EecCHHHHHHHHcCccccceEEEECCCCCCCcccc-cc-------------
Confidence 1111121110 011122221 23555 2 23478899999999988888553110 00
Q ss_pred ecCCCCccccHHHHHHHHHHhhccCceEEEEEe
Q 036911 180 MAKTSPVGRDFTLFLTSRSEEILSGGHVLLSII 212 (359)
Q Consensus 180 ~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~ 212 (359)
..+...||+.-++-|+|||.++++..
T Consensus 132 -------~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 132 -------RLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred -------ccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 11234589888999999999998763
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.53 E-value=2.4e-06 Score=78.30 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=88.7
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhC-CCC-CCe
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKG-SNF-GPC 127 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~-~~~-~~~ 127 (359)
...+|+|+|||+|..+..+.+. ...++..|+... .....+.... ... ...
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-----------------~~~v~~iD~s~~-----------~~~~a~~~~~~~~~~~~~ 96 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-----------------GANVTGIDASEE-----------NIEVAKLHAKKDPLLKIE 96 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-----------------CCeEEEEeCCHH-----------HHHHHHHHHHHcCCCceE
Confidence 4689999999999887766421 134777786421 1111111111 000 112
Q ss_pred EEecccCCcccCCCC-CCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 128 FIAGIPGSFYGRLFP-NKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 128 f~~~v~gsFy~~lfp-~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
|.. +++.+.+.+ ++++|+++++.++|+..+.. .+|+...+-|+|||.
T Consensus 97 ~~~---~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~-----------------------------~~l~~~~~~L~~gG~ 144 (224)
T TIGR01983 97 YRC---TSVEDLAEKGAKSFDVVTCMEVLEHVPDPQ-----------------------------AFIRACAQLLKPGGI 144 (224)
T ss_pred EEe---CCHHHhhcCCCCCccEEEehhHHHhCCCHH-----------------------------HHHHHHHHhcCCCcE
Confidence 222 344333333 47999999999999865432 378888899999999
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEE
Q 036911 207 VLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIH 280 (359)
Q Consensus 207 l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~ 280 (359)
++++...+.. ...+..+.. .++. .+..... -.....+.+.+++.+++++.| |+|..+..+
T Consensus 145 l~i~~~~~~~------~~~~~~~~~--~~~~-~~~~~~~----~~~~~~~~~~~~l~~~l~~~G-~~i~~~~~~ 204 (224)
T TIGR01983 145 LFFSTINRTP------KSYLLAIVG--AEYI-LRIVPKG----THDWEKFIKPSELTSWLESAG-LRVKDVKGL 204 (224)
T ss_pred EEEEecCCCc------hHHHHHHHh--hhhh-hhcCCCC----cCChhhcCCHHHHHHHHHHcC-CeeeeeeeE
Confidence 9887654332 111111000 0111 1111110 011123568899999999998 999887643
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.53 E-value=2.3e-06 Score=78.51 Aligned_cols=182 Identities=10% Similarity=0.024 Sum_probs=95.4
Q ss_pred HHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCC
Q 036911 18 YANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDL 97 (359)
Q Consensus 18 Y~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 97 (359)
|+.-..++..+..-..++.+..+..+.. ......+|+|+|||+|..+..+. +. ...++..|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la--------~~---------~~~v~gvD~ 85 (219)
T TIGR02021 24 GDPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELA--------KR---------GAIVKAVDI 85 (219)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHH--------HC---------CCEEEEEEC
Confidence 4444444444433333333333333321 12346899999999999888765 11 257788886
Q ss_pred CCCchhhhhhcccchHHHHHHhh---CCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCC
Q 036911 98 PGNDFNTIFKSLPGFYEKLKEVK---GSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLN 174 (359)
Q Consensus 98 p~NDFn~lF~~l~~~~~~~~~~~---~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n 174 (359)
.. ......++.. +...+..|.. +++... + +++|+++++..+++++. .
T Consensus 86 s~-----------~~i~~a~~~~~~~~~~~~i~~~~---~d~~~~--~-~~fD~ii~~~~l~~~~~--~----------- 135 (219)
T TIGR02021 86 SE-----------QMVQMARNRAQGRDVAGNVEFEV---NDLLSL--C-GEFDIVVCMDVLIHYPA--S----------- 135 (219)
T ss_pred CH-----------HHHHHHHHHHHhcCCCCceEEEE---CChhhC--C-CCcCEEEEhhHHHhCCH--H-----------
Confidence 42 2222222111 1101223333 455432 2 89999999999877532 1
Q ss_pred CcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCc
Q 036911 175 KGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPY 254 (359)
Q Consensus 175 ~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~ 254 (359)
++..+++...+-+++|+. +++..... ... +...+.+ . +... ....++
T Consensus 136 --------------~~~~~l~~i~~~~~~~~~--i~~~~~~~--------~~~-~~~~~~~----~-~~~~---~~~~~~ 182 (219)
T TIGR02021 136 --------------DMAKALGHLASLTKERVI--FTFAPKTA--------WLA-FLKMIGE----L-FPGS---SRATSA 182 (219)
T ss_pred --------------HHHHHHHHHHHHhCCCEE--EEECCCch--------HHH-HHHHHHh----h-CcCc---ccccce
Confidence 223356555555554433 33322211 111 1111111 1 1111 123457
Q ss_pred cCCCHHHHHHHHhcCCceEEeEEEEEe
Q 036911 255 YAPSPEEVRHVIQTEGSFNIRRFDIHT 281 (359)
Q Consensus 255 y~~s~~E~~~~i~~~Gsf~i~~~e~~~ 281 (359)
++++++|+.+++++.| |++...+...
T Consensus 183 ~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 183 YLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred EEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 8899999999999999 9999887554
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.47 E-value=7.8e-07 Score=79.87 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=77.9
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..++.+.. . .|..+|+.-|...+ . + .......+..+. .++ .
T Consensus 43 ~~~vLDiGcGtG~~s~~la~--------~-------~~~~~V~~iD~s~~-~------~-~~a~~~~~~~~~--~~i--~ 95 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI--------A-------RPELKLTLLESNHK-K------V-AFLREVKAELGL--NNV--E 95 (181)
T ss_pred CCeEEEecCCCCccHHHHHH--------H-------CCCCeEEEEeCcHH-H------H-HHHHHHHHHhCC--CCe--E
Confidence 57999999999999987752 1 14478898897532 0 0 010111111221 222 2
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
.+.++..+ +.+.+++|+++|.. +|++. .+++.-.+-|+|||++++.
T Consensus 96 ~i~~d~~~-~~~~~~fD~I~s~~-~~~~~--------------------------------~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 96 IVNGRAED-FQHEEQFDVITSRA-LASLN--------------------------------VLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred EEecchhh-ccccCCccEEEehh-hhCHH--------------------------------HHHHHHHHhcCCCCEEEEE
Confidence 23456644 34578999999965 44322 2555667889999999987
Q ss_pred EecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcC
Q 036911 211 IIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLP 253 (359)
Q Consensus 211 ~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P 253 (359)
. |... ..-+....+.+..+| ++.-+.+++..|
T Consensus 142 ~-~~~~---------~~~~~~~~e~~~~~~-~~~~~~~~~~~~ 173 (181)
T TIGR00138 142 K-GKKY---------LDEIEEAKRKCQVLG-VEPLEVPPLTGP 173 (181)
T ss_pred c-CCCc---------HHHHHHHHHhhhhcC-ceEeeccccCCC
Confidence 4 3332 122333445666678 466667777777
No 50
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.44 E-value=1.6e-06 Score=83.91 Aligned_cols=115 Identities=18% Similarity=0.189 Sum_probs=74.7
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
...+|+|+|||+|..|..+++.+ +...+++.-|+... + |.....++... .+..-+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l--------------~~~~~~~~iDiS~~-m------L~~a~~~l~~~----~p~~~v 117 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDAL--------------RQPARYVPIDISAD-A------LKESAAALAAD----YPQLEV 117 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhh--------------ccCCeEEEEECCHH-H------HHHHHHHHHhh----CCCceE
Confidence 35789999999999999998554 11378999998631 1 00111112111 123444
Q ss_pred ecccCCcccCC-CCCC----ceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccC
Q 036911 130 AGIPGSFYGRL-FPNK----SLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSG 204 (359)
Q Consensus 130 ~~v~gsFy~~l-fp~~----S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pG 204 (359)
.++.|+|...+ +++. ...++++.+++++++ |. +...||+.-++.|+||
T Consensus 118 ~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~--~~-------------------------e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 118 HGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFT--PE-------------------------EAVAFLRRIRQLLGPG 170 (301)
T ss_pred EEEEEcccchhhhhcccccCCeEEEEecccccCCC--HH-------------------------HHHHHHHHHHHhcCCC
Confidence 55668887532 3433 456777778899875 22 3346999999999999
Q ss_pred ceEEEEEecCCC
Q 036911 205 GHVLLSIIGNDR 216 (359)
Q Consensus 205 G~l~~~~~g~~~ 216 (359)
|+|++.+-...+
T Consensus 171 G~~lig~d~~~~ 182 (301)
T TIGR03438 171 GGLLIGVDLVKD 182 (301)
T ss_pred CEEEEeccCCCC
Confidence 999987765544
No 51
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.43 E-value=3e-06 Score=76.50 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=84.7
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..+..+.+ . ...+++.-|+.. ......+. . +..++.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~--------~--------~~~~~~giD~s~-----------~~i~~a~~-~----~~~~~~ 61 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRD--------E--------KQVRGYGIEIDQ-----------DGVLACVA-R----GVNVIQ 61 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHh--------c--------cCCcEEEEeCCH-----------HHHHHHHH-c----CCeEEE
Confidence 46999999999998765541 1 124455567531 11111111 1 112333
Q ss_pred cccCCccc-C-CCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 131 GIPGSFYG-R-LFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 131 ~v~gsFy~-~-lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
+++.. . .++++++|+++|+.++||+.+... +|+ +-++++|..+
T Consensus 62 ---~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~-----------------------------~l~---e~~r~~~~~i 106 (194)
T TIGR02081 62 ---GDLDEGLEAFPDKSFDYVILSQTLQATRNPEE-----------------------------ILD---EMLRVGRHAI 106 (194)
T ss_pred ---EEhhhcccccCCCCcCEEEEhhHhHcCcCHHH-----------------------------HHH---HHHHhCCeEE
Confidence 45543 2 367889999999999999866322 443 2345677777
Q ss_pred EEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhh-h--ccCC-cCccCCCHHHHHHHHhcCCceEEeEEEEEe
Q 036911 209 LSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAK-V--DWFN-LPYYAPSPEEVRHVIQTEGSFNIRRFDIHT 281 (359)
Q Consensus 209 ~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~-~--d~f~-~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~ 281 (359)
+++..... |... ..+...|.....+ + .-++ .+..+++.+|+.+++++.| |+|.....+.
T Consensus 107 i~~p~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 107 VSFPNFGY---------WRVR----WSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred EEcCChhH---------HHHH----HHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 77643322 1111 1111122211111 1 1112 2345789999999999999 9999888764
No 52
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.42 E-value=1.4e-06 Score=83.61 Aligned_cols=150 Identities=22% Similarity=0.323 Sum_probs=102.5
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
.-+|||+||+.|+-+..+. ++ .| -.|+.-| |+-.|..-|..+..+. +.. ..+|..
T Consensus 116 gk~VLDIGC~nGY~~frM~--------~~-------GA-~~ViGiD-P~~lf~~QF~~i~~~l-------g~~-~~~~~l 170 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRML--------GR-------GA-KSVIGID-PSPLFYLQFEAIKHFL-------GQD-PPVFEL 170 (315)
T ss_pred CCEEEEecCCCcHHHHHHh--------hc-------CC-CEEEEEC-CChHHHHHHHHHHHHh-------CCC-ccEEEc
Confidence 4699999999999988776 22 24 5677778 6666666665443322 211 234544
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
|-..+.... .++||+|||.=.|=-+.+ |- ..|+.-..-|+|||.|++.
T Consensus 171 --plgvE~Lp~-~~~FDtVF~MGVLYHrr~-Pl----------------------------~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 171 --PLGVEDLPN-LGAFDTVFSMGVLYHRRS-PL----------------------------DHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred --Ccchhhccc-cCCcCEEEEeeehhccCC-HH----------------------------HHHHHHHHhhCCCCEEEEE
Confidence 334444444 789999999666655444 21 2566668899999999999
Q ss_pred EecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEE
Q 036911 211 IIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRF 277 (359)
Q Consensus 211 ~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~ 277 (359)
++.-+. .+. .-++.++.+..+.-=|+.||..-++.+++..| |+-.++
T Consensus 219 Tlvi~g--~~~-----------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~~ 265 (315)
T PF08003_consen 219 TLVIDG--DEN-----------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVRC 265 (315)
T ss_pred EeeecC--CCc-----------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEEE
Confidence 987655 211 24566666777777788899999999999999 774443
No 53
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.41 E-value=6.5e-06 Score=75.89 Aligned_cols=145 Identities=17% Similarity=0.172 Sum_probs=92.1
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCC------
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSN------ 123 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~------ 123 (359)
...+|+|+|||.|+|++-++ ++ -.+|+..|+...=- +.+.++.+..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA--------~~---------G~~V~gvD~S~~Ai-----------~~~~~~~~~~~~~~~~ 85 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLA--------EQ---------GHRVLGVELSEIAV-----------EQFFAENGLTPTVTQQ 85 (213)
T ss_pred CCCeEEEeCCCchhHHHHHH--------hC---------CCeEEEEeCCHHHH-----------HHHHHHcCCCcceecc
Confidence 34799999999999999887 22 37888888863211 1111111100
Q ss_pred -----CCCeEEecccCCcccCCC-CCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHH
Q 036911 124 -----FGPCFIAGIPGSFYGRLF-PNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSR 197 (359)
Q Consensus 124 -----~~~~f~~~v~gsFy~~lf-p~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~R 197 (359)
.+..-+..+-++|++... +...+|.++-..++| .+|.. +...+++.-
T Consensus 86 ~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~---~l~~~------------------------~R~~~~~~l 138 (213)
T TIGR03840 86 GEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALI---ALPEE------------------------MRQRYAAHL 138 (213)
T ss_pred ccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhc---cCCHH------------------------HHHHHHHHH
Confidence 000011122357765433 135689999988887 34432 334688899
Q ss_pred HHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEE
Q 036911 198 SEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRF 277 (359)
Q Consensus 198 a~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~ 277 (359)
.+-|+|||++++..+..+. .. ..-|.|.-+++|+++.+... |+|+.+
T Consensus 139 ~~lLkpgG~~ll~~~~~~~--~~-----------------------------~~gpp~~~~~~eL~~~f~~~--~~i~~~ 185 (213)
T TIGR03840 139 LALLPPGARQLLITLDYDQ--SE-----------------------------MAGPPFSVSPAEVEALYGGH--YEIELL 185 (213)
T ss_pred HHHcCCCCeEEEEEEEcCC--CC-----------------------------CCCcCCCCCHHHHHHHhcCC--ceEEEE
Confidence 9999999998888776544 10 01255789999999998643 888888
Q ss_pred EEEee
Q 036911 278 DIHTV 282 (359)
Q Consensus 278 e~~~~ 282 (359)
+....
T Consensus 186 ~~~~~ 190 (213)
T TIGR03840 186 ESRDV 190 (213)
T ss_pred eeccc
Confidence 76553
No 54
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.40 E-value=2.8e-06 Score=78.72 Aligned_cols=182 Identities=15% Similarity=0.184 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccch
Q 036911 33 KPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGF 112 (359)
Q Consensus 33 ~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~ 112 (359)
..+|.....++.......+.+|+++|||.|....-+++. .+.|.+.+|..|-..+ -
T Consensus 54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~-------------~~n~~l~v~acDfsp~-----------A 109 (264)
T KOG2361|consen 54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKT-------------SPNNRLKVYACDFSPR-----------A 109 (264)
T ss_pred hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhc-------------CCCCCeEEEEcCCChH-----------H
Confidence 445555555554322122459999999999877766622 1334599998887643 1
Q ss_pred HHHHHHhhCCCCC--CeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccH
Q 036911 113 YEKLKEVKGSNFG--PCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDF 190 (359)
Q Consensus 113 ~~~~~~~~~~~~~--~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~ 190 (359)
.+-+++..+.... ..|+.-..++=....+.++|+|++..-+. ||-+|+. -+
T Consensus 110 i~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~pe------------------------k~ 162 (264)
T KOG2361|consen 110 IELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHPE------------------------KM 162 (264)
T ss_pred HHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE---EeccChH------------------------HH
Confidence 1112222111111 12333222232456677889998876544 3444442 23
Q ss_pred HHHHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhh-ccCCcCccCCCHHHHHHHHhcC
Q 036911 191 TLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKV-DWFNLPYYAPSPEEVRHVIQTE 269 (359)
Q Consensus 191 ~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~-d~f~~P~y~~s~~E~~~~i~~~ 269 (359)
..-+..-.+-|||||.|++-=.|+.+. ++ ++-+ .+-.|+...+ ..=..+.||.+.+|++.++.+.
T Consensus 163 ~~a~~nl~~llKPGG~llfrDYg~~Dl------------aq-lRF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 163 QSVIKNLRTLLKPGGSLLFRDYGRYDL------------AQ-LRFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred HHHHHHHHHHhCCCcEEEEeecccchH------------HH-Hhcc-CCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 345667789999999999999999771 11 1111 2233333322 1113688999999999999999
Q ss_pred CceEEeEEEEE
Q 036911 270 GSFNIRRFDIH 280 (359)
Q Consensus 270 Gsf~i~~~e~~ 280 (359)
| |...+++..
T Consensus 229 g-f~~~~~~~~ 238 (264)
T KOG2361|consen 229 G-FEEVQLEVD 238 (264)
T ss_pred c-cchhcccce
Confidence 9 887776653
No 55
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.38 E-value=7.5e-06 Score=75.66 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=88.8
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh-CCCCCCeE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK-GSNFGPCF 128 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~-~~~~~~~f 128 (359)
...+|+|+|||+|..+..+. +. ..+++..|+..+ .....+... .......+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~--------~~---------~~~v~~iD~s~~-----------~~~~a~~~~~~~~~~~~~ 99 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMA--------RL---------GADVTGIDASEE-----------NIEVARLHALESGLKIDY 99 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHH--------Hc---------CCeEEEEcCCHH-----------HHHHHHHHHHHcCCceEE
Confidence 35799999999998776554 11 145777787422 111111110 00111123
Q ss_pred EecccCCcccCC-CCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 129 IAGIPGSFYGRL-FPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 129 ~~~v~gsFy~~l-fp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
.. +++...+ .+++.+|+++++..+++..+.. .+|+...+-|+|||++
T Consensus 100 ~~---~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~-----------------------------~~l~~~~~~L~~gG~l 147 (233)
T PRK05134 100 RQ---TTAEELAAEHPGQFDVVTCMEMLEHVPDPA-----------------------------SFVRACAKLVKPGGLV 147 (233)
T ss_pred Ee---cCHHHhhhhcCCCccEEEEhhHhhccCCHH-----------------------------HHHHHHHHHcCCCcEE
Confidence 22 2332222 3568999999999888865422 3778889999999999
Q ss_pred EEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEE
Q 036911 208 LLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDI 279 (359)
Q Consensus 208 ~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~ 279 (359)
+++..++.. . ........ ...+..+. .. .......+.+++++.+++++.| |++..+..
T Consensus 148 ~v~~~~~~~--~---~~~~~~~~---~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~ 205 (233)
T PRK05134 148 FFSTLNRNL--K---SYLLAIVG---AEYVLRML-PK----GTHDYKKFIKPSELAAWLRQAG-LEVQDITG 205 (233)
T ss_pred EEEecCCCh--H---HHHHHHhh---HHHHhhhc-Cc----ccCchhhcCCHHHHHHHHHHCC-CeEeeeee
Confidence 988765433 1 11111110 11111111 10 0011234678999999999999 99887764
No 56
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.36 E-value=4.8e-06 Score=76.42 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=71.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..|..+++.. .+..+|+.-|+.. .+ .++ +-.++
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~--------------~~~~~V~aVDi~~--~~----~~~--------------~v~~i- 96 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQI--------------GDKGRVIACDILP--MD----PIV--------------GVDFL- 96 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHc--------------CCCceEEEEeccc--cc----CCC--------------CcEEE-
Confidence 4689999999999888777332 2346888888742 11 011 11233
Q ss_pred cccCCcccC--------CCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhc
Q 036911 131 GIPGSFYGR--------LFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEIL 202 (359)
Q Consensus 131 ~v~gsFy~~--------lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~ 202 (359)
-+++... .++++++|+|+|+.+.||... |. .+.. . ........|+.-.+-|+
T Consensus 97 --~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d~~------~---------~~~~~~~~L~~~~~~Lk 156 (209)
T PRK11188 97 --QGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VDIP------R---------AMYLVELALDMCRDVLA 156 (209)
T ss_pred --ecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HHHH------H---------HHHHHHHHHHHHHHHcC
Confidence 3566653 267899999999999999543 21 0000 0 00012357888899999
Q ss_pred cCceEEEEEecCCC
Q 036911 203 SGGHVLLSIIGNDR 216 (359)
Q Consensus 203 pGG~l~~~~~g~~~ 216 (359)
|||.+++..+..+.
T Consensus 157 pGG~~vi~~~~~~~ 170 (209)
T PRK11188 157 PGGSFVVKVFQGEG 170 (209)
T ss_pred CCCEEEEEEecCcC
Confidence 99999998776654
No 57
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.35 E-value=3.4e-06 Score=76.29 Aligned_cols=112 Identities=14% Similarity=0.216 Sum_probs=69.6
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh-hCCCCCCeEE
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV-KGSNFGPCFI 129 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~-~~~~~~~~f~ 129 (359)
..+|+|+|||+|..+..++.. .|..+++..|+.. ......... ......++-
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~---------------~p~~~v~gvD~~~-----------~~l~~a~~~~~~~~l~ni~- 69 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ---------------NPDKNFLGIEIHT-----------PIVLAANNKANKLGLKNLH- 69 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh---------------CCCCCEEEEEeeH-----------HHHHHHHHHHHHhCCCCEE-
Confidence 469999999999998877722 2668888888742 111111111 111112332
Q ss_pred ecccCCccc---CCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 130 AGIPGSFYG---RLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 130 ~~v~gsFy~---~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
.+.++... ..+|++++|.+++++..+|..+ .... ..+ .-..||+.-++-|+|||.
T Consensus 70 -~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h~~----------~r~----------~~~~~l~~~~r~LkpgG~ 127 (194)
T TIGR00091 70 -VLCGDANELLDKFFPDGSLSKVFLNFPDPWPKK-RHNK----------RRI----------TQPHFLKEYANVLKKGGV 127 (194)
T ss_pred -EEccCHHHHHHhhCCCCceeEEEEECCCcCCCC-Cccc----------ccc----------CCHHHHHHHHHHhCCCCE
Confidence 23356543 3467789999999999999433 1000 000 013588888999999999
Q ss_pred EEEEE
Q 036911 207 VLLSI 211 (359)
Q Consensus 207 l~~~~ 211 (359)
+++.+
T Consensus 128 l~~~t 132 (194)
T TIGR00091 128 IHFKT 132 (194)
T ss_pred EEEEe
Confidence 98877
No 58
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=5.4e-05 Score=72.36 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=91.9
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCC-CeE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFG-PCF 128 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~-~~f 128 (359)
.-.+|||||||=|..++..+ ++| .+.|+-.+|..|-..- .+.+.+ ..|...+ .+-
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA--------~~y--------~v~V~GvTlS~~Q~~~-------~~~r~~-~~gl~~~v~v~ 127 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAA--------EEY--------GVTVVGVTLSEEQLAY-------AEKRIA-ARGLEDNVEVR 127 (283)
T ss_pred CCCEEEEeCCChhHHHHHHH--------HHc--------CCEEEEeeCCHHHHHH-------HHHHHH-HcCCCcccEEE
Confidence 46899999999999888877 333 3788888887541100 001111 1122101 122
Q ss_pred EecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 129 IAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
.. ++ +-|.+. +|=|+|.=+++-+.. +.|..|++.-.+-|+|||+|+
T Consensus 128 l~----d~--rd~~e~-fDrIvSvgmfEhvg~---------------------------~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 128 LQ----DY--RDFEEP-FDRIVSVGMFEHVGK---------------------------ENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred ec----cc--cccccc-cceeeehhhHHHhCc---------------------------ccHHHHHHHHHhhcCCCceEE
Confidence 22 22 222222 999999777766544 345679999999999999999
Q ss_pred EEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcC-ccCCCHHHHHHHHhcCCceEEeEEEEE
Q 036911 209 LSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLP-YYAPSPEEVRHVIQTEGSFNIRRFDIH 280 (359)
Q Consensus 209 ~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P-~y~~s~~E~~~~i~~~Gsf~i~~~e~~ 280 (359)
+-.++.... .. . + ...-.+.+.+| -+.||..++....++.| |.|...+.+
T Consensus 174 lh~I~~~~~-~~----~--------------~--~~~~i~~yiFPgG~lPs~~~i~~~~~~~~-~~v~~~~~~ 224 (283)
T COG2230 174 LHSITGPDQ-EF----R--------------R--FPDFIDKYIFPGGELPSISEILELASEAG-FVVLDVESL 224 (283)
T ss_pred EEEecCCCc-cc----c--------------c--chHHHHHhCCCCCcCCCHHHHHHHHHhcC-cEEehHhhh
Confidence 999987661 10 0 0 00111122223 36689999999988888 887655544
No 59
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.34 E-value=1.4e-05 Score=73.94 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=88.3
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCC-----CC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGS-----NF 124 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~-----~~ 124 (359)
...+|+|+|||.|+|++-|+ ++ ..+|+..|+...=-...++... ..... ...+. ..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA--------~~---------G~~V~avD~s~~Ai~~~~~~~~-l~~~~-~~~~~~~~~~~~ 97 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLA--------EQ---------GHEVLGVELSELAVEQFFAENG-LTPQT-RQSGEFEHYQAG 97 (218)
T ss_pred CCCeEEEeCCCChHhHHHHH--------hC---------CCeEEEEccCHHHHHHHHHHcC-CCccc-cccccccccccC
Confidence 34799999999999999887 21 3788888876321111111000 00000 00000 00
Q ss_pred CCeEEecccCCcccCCCC-CCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhcc
Q 036911 125 GPCFIAGIPGSFYGRLFP-NKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILS 203 (359)
Q Consensus 125 ~~~f~~~v~gsFy~~lfp-~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~p 203 (359)
.-.+. -++++..... ...+|+++-..++|= +|.. +...+++.-++-|+|
T Consensus 98 ~v~~~---~~D~~~l~~~~~~~fd~v~D~~~~~~---l~~~------------------------~R~~~~~~l~~lL~p 147 (218)
T PRK13255 98 EITIY---CGDFFALTAADLADVDAVYDRAALIA---LPEE------------------------MRERYVQQLAALLPA 147 (218)
T ss_pred ceEEE---ECcccCCCcccCCCeeEEEehHhHhh---CCHH------------------------HHHHHHHHHHHHcCC
Confidence 11122 2566654322 247899999888884 3432 234688899999999
Q ss_pred CceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEEe
Q 036911 204 GGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHT 281 (359)
Q Consensus 204 GG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~ 281 (359)
||++++..+...+ .. ..-|.|..+++|+++.+... |+|+.++...
T Consensus 148 gG~~~l~~~~~~~--~~-----------------------------~~gPp~~~~~~el~~~~~~~--~~i~~~~~~~ 192 (218)
T PRK13255 148 GCRGLLVTLDYPQ--EE-----------------------------LAGPPFSVSDEEVEALYAGC--FEIELLERQD 192 (218)
T ss_pred CCeEEEEEEEeCC--cc-----------------------------CCCCCCCCCHHHHHHHhcCC--ceEEEeeecc
Confidence 9976665554433 10 02255788999999998532 8998887654
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.33 E-value=2.2e-06 Score=77.64 Aligned_cols=136 Identities=21% Similarity=0.278 Sum_probs=80.6
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~ 126 (359)
++.+++|+|||.|+||+-|+ ++ -+.|..-|.... ..+++.+ ..+. +
T Consensus 30 ~~g~~LDlgcG~GRNalyLA--------~~---------G~~VtAvD~s~~-----------al~~l~~~a~~~~l---~ 78 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLA--------SQ---------GFDVTAVDISPV-----------ALEKLQRLAEEEGL---D 78 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHH--------HT---------T-EEEEEESSHH-----------HHHHHHHHHHHTT----T
T ss_pred CCCcEEEcCCCCcHHHHHHH--------HC---------CCeEEEEECCHH-----------HHHHHHHHHhhcCc---e
Confidence 36899999999999999987 32 388888897532 2222221 1111 1
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
+...-.++.+.-+ ++.+|+|+|...+|.|.. + .+..+++...+.++|||+
T Consensus 79 --i~~~~~Dl~~~~~-~~~yD~I~st~v~~fL~~--~-------------------------~~~~i~~~m~~~~~pGG~ 128 (192)
T PF03848_consen 79 --IRTRVADLNDFDF-PEEYDFIVSTVVFMFLQR--E-------------------------LRPQIIENMKAATKPGGY 128 (192)
T ss_dssp --EEEEE-BGCCBS--TTTEEEEEEESSGGGS-G--G-------------------------GHHHHHHHHHHTEEEEEE
T ss_pred --eEEEEecchhccc-cCCcCEEEEEEEeccCCH--H-------------------------HHHHHHHHHHhhcCCcEE
Confidence 2222345544444 478999999999999764 1 223478888999999999
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEE
Q 036911 207 VLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFD 278 (359)
Q Consensus 207 l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e 278 (359)
+++..+-..+ . .+. ..+.| +...+.|++.... | |+|.+-+
T Consensus 129 ~li~~~~~~~--d----------------------~p~----~~~~~-f~~~~~EL~~~y~--d-W~il~y~ 168 (192)
T PF03848_consen 129 NLIVTFMETP--D----------------------YPC----PSPFP-FLLKPGELREYYA--D-WEILKYN 168 (192)
T ss_dssp EEEEEEB--S--S----------------------S------SS--S---B-TTHHHHHTT--T-SEEEEEE
T ss_pred EEEEEecccC--C----------------------CCC----CCCCC-cccCHHHHHHHhC--C-CeEEEEE
Confidence 8886653322 1 000 11333 4458889999875 3 8987754
No 61
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.33 E-value=1.3e-05 Score=74.74 Aligned_cols=104 Identities=22% Similarity=0.297 Sum_probs=74.1
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeE
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCF 128 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f 128 (359)
+...+|+|+|+|+|..+..++ ++| |..+++.-|||.. ++. .+. . .++-
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~v--------~~~----~~~--~---~rv~ 146 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALA--------RAY-------PNLRATVFDLPEV--------IEQ----AKE--A---DRVE 146 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHH--------HHS-------TTSEEEEEE-HHH--------HCC----HHH--T---TTEE
T ss_pred cCccEEEeccCcchHHHHHHH--------HHC-------CCCcceeeccHhh--------hhc----ccc--c---cccc
Confidence 345689999999999988887 443 7799999999831 111 111 0 2233
Q ss_pred EecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccC--ce
Q 036911 129 IAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSG--GH 206 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pG--G~ 206 (359)
-+||+|+ ..+|. .|+++-...||=.++ ++-..+|+.-++.|+|| |+
T Consensus 147 --~~~gd~f-~~~P~--~D~~~l~~vLh~~~d---------------------------~~~~~iL~~~~~al~pg~~g~ 194 (241)
T PF00891_consen 147 --FVPGDFF-DPLPV--ADVYLLRHVLHDWSD---------------------------EDCVKILRNAAAALKPGKDGR 194 (241)
T ss_dssp --EEES-TT-TCCSS--ESEEEEESSGGGS-H---------------------------HHHHHHHHHHHHHSEECTTEE
T ss_pred --cccccHH-hhhcc--ccceeeehhhhhcch---------------------------HHHHHHHHHHHHHhCCCCCCe
Confidence 3679999 78887 999999999983222 34457999999999999 99
Q ss_pred EEEEEecCCC
Q 036911 207 VLLSIIGNDR 216 (359)
Q Consensus 207 l~~~~~g~~~ 216 (359)
+++.-.-.++
T Consensus 195 llI~e~~~~~ 204 (241)
T PF00891_consen 195 LLIIEMVLPD 204 (241)
T ss_dssp EEEEEEEECS
T ss_pred EEEEeeccCC
Confidence 9998887666
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.31 E-value=6.9e-06 Score=73.07 Aligned_cols=123 Identities=14% Similarity=0.146 Sum_probs=70.4
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhC-CCCCCeEE
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKG-SNFGPCFI 129 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~-~~~~~~f~ 129 (359)
..+|+|+|||+|..+..+. +. .+ +++..|+.. ......+.... .... +
T Consensus 20 ~~~vLdlG~G~G~~~~~l~--------~~-------~~--~v~~vD~s~-----------~~~~~a~~~~~~~~~~---~ 68 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLK--------GK-------GK--CILTTDINP-----------FAVKELRENAKLNNVG---L 68 (179)
T ss_pred CCeEEEeCCChhHHHHHHH--------hc-------CC--EEEEEECCH-----------HHHHHHHHHHHHcCCc---e
Confidence 4689999999999888776 21 12 788888742 22222221110 0011 1
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
..+.+++++.+ .+++|+++|+..+|.....+.. .+ +. .+-..+..........||+.-.+-|+|||++++
T Consensus 69 ~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~-~~-----~~--~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 69 DVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRR-GD-----WL--DVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred EEEEccccccc--CCcccEEEECCCCCCCcchhcc-cc-----hh--hhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 22345665533 4599999999888765432210 00 00 000111111133467899988999999999998
Q ss_pred EEecC
Q 036911 210 SIIGN 214 (359)
Q Consensus 210 ~~~g~ 214 (359)
...+.
T Consensus 139 ~~~~~ 143 (179)
T TIGR00537 139 IQSSL 143 (179)
T ss_pred EEecc
Confidence 87544
No 63
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.30 E-value=1.2e-05 Score=74.52 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=66.0
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
.-.+.|+|||+|..++.+.+. + -+|+..|+.. .....+++. +++-.+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~----------------~-k~VIatD~s~-----------~mL~~a~k~-----~~~~y~ 80 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEH----------------Y-KEVIATDVSE-----------AMLKVAKKH-----PPVTYC 80 (261)
T ss_pred cceEEEeccCCCcchHHHHHh----------------h-hhheeecCCH-----------HHHHHhhcC-----CCcccc
Confidence 348999999999655555422 2 5677778752 111112211 111111
Q ss_pred cccCCcc-----cCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 131 GIPGSFY-----GRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 131 ~v~gsFy-----~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
-+|-+|- ..+-+++|||+|.+.-|+||+ |+.+|.+.-.+.||+.|
T Consensus 81 ~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF------------------------------dle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 81 HTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF------------------------------DLERFYKEAYRVLRKDG 130 (261)
T ss_pred cCCccccccccccccCCCcceeeehhhhhHHhh------------------------------chHHHHHHHHHHcCCCC
Confidence 2233332 445579999999999999995 34469999999999999
Q ss_pred eEEEEEecCCC
Q 036911 206 HVLLSIIGNDR 216 (359)
Q Consensus 206 ~l~~~~~g~~~ 216 (359)
-++....=+++
T Consensus 131 g~iavW~Y~dd 141 (261)
T KOG3010|consen 131 GLIAVWNYNDD 141 (261)
T ss_pred CEEEEEEccCC
Confidence 77777666655
No 64
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.30 E-value=6e-06 Score=78.51 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=37.8
Q ss_pred CCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 134 GSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 134 gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
++..+..+|.+++|+|+|.++|||++. | +...+|+.-++-|+|||+|++
T Consensus 192 ~dl~~~~~~~~~fD~I~crnvl~yf~~-~--------------------------~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 192 HNLLAESPPLGDFDLIFCRNVLIYFDE-P--------------------------TQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred ccCCCCCCccCCCCEEEechhHHhCCH-H--------------------------HHHHHHHHHHHHhCCCeEEEE
Confidence 344455567889999999999999864 2 123478888999999999976
No 65
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.29 E-value=3.6e-05 Score=70.63 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=25.6
Q ss_pred CcCccCCCHHHHHHHHhcCCceEEeEEEEEeec
Q 036911 251 NLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTVD 283 (359)
Q Consensus 251 ~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~ 283 (359)
..+.++.+.+++.+.++..| |++.+.+.+...
T Consensus 187 ~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~ 218 (230)
T PRK07580 187 TTRIYPHREKGIRRALAAAG-FKVVRTERISSG 218 (230)
T ss_pred CCCccccCHHHHHHHHHHCC-CceEeeeeccch
Confidence 34567789999999999999 999888766533
No 66
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.28 E-value=6.3e-07 Score=72.11 Aligned_cols=99 Identities=24% Similarity=0.300 Sum_probs=61.5
Q ss_pred EEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh-CCCCCCeEEecc
Q 036911 54 IADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK-GSNFGPCFIAGI 132 (359)
Q Consensus 54 IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~-~~~~~~~f~~~v 132 (359)
|+|+|||+|..+..+.... +..|+.+++.-|+.. ......++.. ....+..|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~------------~~~~~~~~~gvD~s~-----------~~l~~~~~~~~~~~~~~~~~~-- 55 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF------------DAGPSSRVIGVDISP-----------EMLELAKKRFSEDGPKVRFVQ-- 55 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-H-----------HHHHHHHHHSHHTTTTSEEEE--
T ss_pred CEEeecCCcHHHHHHHHHh------------hhcccceEEEEECCH-----------HHHHHHHHhchhcCCceEEEE--
Confidence 7999999999999887332 112458899999752 1212122111 0111334544
Q ss_pred cCCcccCCCCCCceeEEEeccc-ccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 133 PGSFYGRLFPNKSLHFVHSSYS-LHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 133 ~gsFy~~lfp~~S~d~~~S~~a-lhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
+++-+..++.+++|+++++.. +|.+++ +++..+|+.-++-|+|||
T Consensus 56 -~D~~~l~~~~~~~D~v~~~~~~~~~~~~---------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 56 -ADARDLPFSDGKFDLVVCSGLSLHHLSP---------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp -SCTTCHHHHSSSEEEEEE-TTGGGGSSH---------------------------HHHHHHHHHHHHTEEEEE
T ss_pred -CCHhHCcccCCCeeEEEEcCCccCCCCH---------------------------HHHHHHHHHHHHHhCCCC
Confidence 566555667889999999655 888664 345679999999999998
No 67
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.25 E-value=6.8e-06 Score=75.19 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=62.8
Q ss_pred CcchHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEE
Q 036911 14 GDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVF 93 (359)
Q Consensus 14 g~~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~ 93 (359)
|.. |.+....+..+ .....++...+..+ +...+|+|+|||+|.++..+.+.+ |..+++
T Consensus 14 g~~-~~~rn~~~~~~-~~~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L~~~~---------------~~~~v~ 71 (204)
T TIGR03587 14 GKE-YIDRNSRQSLV-AAKLAMFARALNRL-----PKIASILELGANIGMNLAALKRLL---------------PFKHIY 71 (204)
T ss_pred cch-hhhccccHHHH-HHHHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHHhC---------------CCCeEE
Confidence 444 44444333222 33444555544422 346789999999999888776221 347888
Q ss_pred ecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccc
Q 036911 94 LNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLS 159 (359)
Q Consensus 94 ~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls 159 (359)
.-|+.. ......+.... +..+. .+++.. .++++++|+|+++.+||+++
T Consensus 72 giDiS~-----------~~l~~A~~~~~---~~~~~---~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 72 GVEINE-----------YAVEKAKAYLP---NINII---QGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred EEECCH-----------HHHHHHHhhCC---CCcEE---EeeccC-CCCCCCEEEEEECChhhhCC
Confidence 889752 12121211111 11232 356666 78999999999999998764
No 68
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.20 E-value=5.9e-06 Score=77.48 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=92.6
Q ss_pred ceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhC--------CC
Q 036911 52 LKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKG--------SN 123 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~--------~~ 123 (359)
.+|+|+|||+|-.|..|+ +. -.+|...|+.. ...+-.+.+.. ..
T Consensus 91 ~~ilDvGCGgGLLSepLA--------rl---------ga~V~GID~s~-----------~~V~vA~~h~~~dP~~~~~~~ 142 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLA--------RL---------GAQVTGIDASD-----------DMVEVANEHKKMDPVLEGAIA 142 (282)
T ss_pred ceEEEeccCccccchhhH--------hh---------CCeeEeecccH-----------HHHHHHHHhhhcCchhccccc
Confidence 679999999999999886 21 38888889751 11111111110 00
Q ss_pred CCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhcc
Q 036911 124 FGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILS 203 (359)
Q Consensus 124 ~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~p 203 (359)
++-.|.....-++ -+ .+|.|+++-.++-..+++ .||.+-.+-|+|
T Consensus 143 y~l~~~~~~~E~~----~~--~fDaVvcsevleHV~dp~-----------------------------~~l~~l~~~lkP 187 (282)
T KOG1270|consen 143 YRLEYEDTDVEGL----TG--KFDAVVCSEVLEHVKDPQ-----------------------------EFLNCLSALLKP 187 (282)
T ss_pred eeeehhhcchhhc----cc--ccceeeeHHHHHHHhCHH-----------------------------HHHHHHHHHhCC
Confidence 0111222222111 12 299999998888865544 499999999999
Q ss_pred CceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEE
Q 036911 204 GGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFD 278 (359)
Q Consensus 204 GG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e 278 (359)
||+|+++...|.-..- ...+ .+.+.+...|-.|--. +--|++++|+..+++.++ +.+..+.
T Consensus 188 ~G~lfittinrt~lS~--~~~i--~~~E~vl~ivp~Gth~---------~ekfi~p~e~~~~l~~~~-~~v~~v~ 248 (282)
T KOG1270|consen 188 NGRLFITTINRTILSF--AGTI--FLAEIVLRIVPKGTHT---------WEKFINPEELTSILNANG-AQVNDVV 248 (282)
T ss_pred CCceEeeehhhhHHHh--hccc--cHHHHHHHhcCCCCcC---------HHHcCCHHHHHHHHHhcC-cchhhhh
Confidence 9999999987754100 0111 1222222355566533 335789999999999987 7776653
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.18 E-value=5e-06 Score=82.85 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=67.3
Q ss_pred ceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCeE
Q 036911 52 LKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPCF 128 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~f 128 (359)
.+|+|+|||+|..++.+. ++ .|..+|++.|... ...+..+. .++.. ...-
T Consensus 230 ~~VLDLGCGtGvi~i~la--------~~-------~P~~~V~~vD~S~-----------~Av~~A~~N~~~n~~~-~~~~ 282 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--------DK-------NPQAKVVFVDESP-----------MAVASSRLNVETNMPE-ALDR 282 (378)
T ss_pred CeEEEEeccccHHHHHHH--------Hh-------CCCCEEEEEECCH-----------HHHHHHHHHHHHcCcc-cCce
Confidence 599999999999888776 32 2678999999841 11111111 11110 0001
Q ss_pred EecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 129 IAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
+..+.++.+..+ ++.++|+|+|+--+|+...+... ....+++.-.+-|+|||.|+
T Consensus 283 v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~------------------------ia~~l~~~a~~~LkpGG~L~ 337 (378)
T PRK15001 283 CEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDN------------------------VAWEMFHHARRCLKINGELY 337 (378)
T ss_pred EEEEEccccccC-CCCCEEEEEECcCcccCccCCHH------------------------HHHHHHHHHHHhcccCCEEE
Confidence 112234555443 55789999999888875433221 12347777788999999999
Q ss_pred EEE
Q 036911 209 LSI 211 (359)
Q Consensus 209 ~~~ 211 (359)
++.
T Consensus 338 iV~ 340 (378)
T PRK15001 338 IVA 340 (378)
T ss_pred EEE
Confidence 985
No 70
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.17 E-value=1.2e-05 Score=72.16 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=62.0
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~ 126 (359)
...+|+|+|||+|..++.+++.. |..+++..|... .....+++ ..+. .+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~---------------~~~~v~~vD~s~-----------~~~~~a~~n~~~~~~--~~ 82 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF---------------PSLQVTAIERNP-----------DALRLIKENRQRFGC--GN 82 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC---------------CCCEEEEEECCH-----------HHHHHHHHHHHHhCC--CC
Confidence 45799999999999998886221 457888889741 11111111 1111 12
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
+- .+.++.. ..+ ++++|++++..+.+. +..++....+.|+|||+
T Consensus 83 i~--~~~~d~~-~~~-~~~~D~v~~~~~~~~--------------------------------~~~~l~~~~~~Lk~gG~ 126 (187)
T PRK08287 83 ID--IIPGEAP-IEL-PGKADAIFIGGSGGN--------------------------------LTAIIDWSLAHLHPGGR 126 (187)
T ss_pred eE--EEecCch-hhc-CcCCCEEEECCCccC--------------------------------HHHHHHHHHHhcCCCeE
Confidence 21 1223432 222 468999998654322 22377777889999999
Q ss_pred EEEEEecCCC
Q 036911 207 VLLSIIGNDR 216 (359)
Q Consensus 207 l~~~~~g~~~ 216 (359)
+++......+
T Consensus 127 lv~~~~~~~~ 136 (187)
T PRK08287 127 LVLTFILLEN 136 (187)
T ss_pred EEEEEecHhh
Confidence 9987654433
No 71
>PRK04266 fibrillarin; Provisional
Probab=98.17 E-value=1.8e-05 Score=73.54 Aligned_cols=105 Identities=14% Similarity=0.060 Sum_probs=59.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..|..+.+.+ +...|+.-|+... ..+.+.+......+-.++.
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v---------------~~g~V~avD~~~~-----------ml~~l~~~a~~~~nv~~i~ 126 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIV---------------EEGVVYAVEFAPR-----------PMRELLEVAEERKNIIPIL 126 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhc---------------CCCeEEEEECCHH-----------HHHHHHHHhhhcCCcEEEE
Confidence 4799999999999988776322 1357888887421 1111111100000112332
Q ss_pred cccCCcccC---CCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 131 GIPGSFYGR---LFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 131 ~v~gsFy~~---lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
++.... ...+.++|++++..+..|- -..+|+.-++.|||||++
T Consensus 127 ---~D~~~~~~~~~l~~~~D~i~~d~~~p~~-------------------------------~~~~L~~~~r~LKpGG~l 172 (226)
T PRK04266 127 ---ADARKPERYAHVVEKVDVIYQDVAQPNQ-------------------------------AEIAIDNAEFFLKDGGYL 172 (226)
T ss_pred ---CCCCCcchhhhccccCCEEEECCCChhH-------------------------------HHHHHHHHHHhcCCCcEE
Confidence 333321 1123569999975442220 012566778899999999
Q ss_pred EEEEecCC
Q 036911 208 LLSIIGND 215 (359)
Q Consensus 208 ~~~~~g~~ 215 (359)
++++..+.
T Consensus 173 vI~v~~~~ 180 (226)
T PRK04266 173 LLAIKARS 180 (226)
T ss_pred EEEEeccc
Confidence 99876543
No 72
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.15 E-value=1.2e-05 Score=66.11 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=61.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~ 127 (359)
..+|+|+|||+|..+..+++.. |..+++..|+.. ...+..+. ..+.. +..
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~-----------~~~~~a~~~~~~~~~~-~~~ 72 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV---------------PNGRVYAIERNP-----------EALRLIERNARRFGVS-NIV 72 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC---------------CCceEEEEcCCH-----------HHHHHHHHHHHHhCCC-ceE
Confidence 4699999999999998886332 447889899742 11111111 11111 122
Q ss_pred EEecccCCccc-CCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 128 FIAGIPGSFYG-RLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 128 f~~~v~gsFy~-~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
++. ++... .....+++|++++..+.++ +..+++.-.+.|+|||+
T Consensus 73 ~~~---~~~~~~~~~~~~~~D~v~~~~~~~~--------------------------------~~~~l~~~~~~Lk~gG~ 117 (124)
T TIGR02469 73 IVE---GDAPEALEDSLPEPDRVFIGGSGGL--------------------------------LQEILEAIWRRLRPGGR 117 (124)
T ss_pred EEe---ccccccChhhcCCCCEEEECCcchh--------------------------------HHHHHHHHHHHcCCCCE
Confidence 322 33322 1123468999988544332 23488899999999999
Q ss_pred EEEEEe
Q 036911 207 VLLSII 212 (359)
Q Consensus 207 l~~~~~ 212 (359)
+++.+.
T Consensus 118 li~~~~ 123 (124)
T TIGR02469 118 IVLNAI 123 (124)
T ss_pred EEEEec
Confidence 999863
No 73
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.14 E-value=6.9e-06 Score=74.20 Aligned_cols=99 Identities=18% Similarity=0.137 Sum_probs=63.3
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~ 126 (359)
...+|+|+|||+|..++.++.. .|..+|+.-|... ......++ ..+. .+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~---------------~~~~~V~giD~s~-----------~~l~~A~~~~~~~~l--~~ 96 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIA---------------RPELKVTLVDSLG-----------KKIAFLREVAAELGL--KN 96 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHH---------------CCCCeEEEEeCcH-----------HHHHHHHHHHHHcCC--CC
Confidence 3689999999999998877632 1457899889742 11111111 1221 12
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
+.-+.++..+... ++++|+++|.. +. ++..|++..++-|+|||+
T Consensus 97 --i~~~~~d~~~~~~-~~~fDlV~~~~-~~--------------------------------~~~~~l~~~~~~LkpGG~ 140 (187)
T PRK00107 97 --VTVVHGRAEEFGQ-EEKFDVVTSRA-VA--------------------------------SLSDLVELCLPLLKPGGR 140 (187)
T ss_pred --EEEEeccHhhCCC-CCCccEEEEcc-cc--------------------------------CHHHHHHHHHHhcCCCeE
Confidence 2223455544333 67999999853 11 233588899999999999
Q ss_pred EEEEEe
Q 036911 207 VLLSII 212 (359)
Q Consensus 207 l~~~~~ 212 (359)
+++...
T Consensus 141 lv~~~~ 146 (187)
T PRK00107 141 FLALKG 146 (187)
T ss_pred EEEEeC
Confidence 998863
No 74
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.12 E-value=1.6e-05 Score=72.68 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=60.8
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~ 127 (359)
..+|+|+|||+|..|..+.+.+ .+.-+|+..|... ......++ ..+.. .++
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~--------------~~~g~V~~iD~~~-----------~~~~~a~~~l~~~~~~-~~v 126 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAI--------------ERRGKVYTVEIVK-----------ELAIYAAQNIERLGYW-GVV 126 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhc--------------CCCCEEEEEeCCH-----------HHHHHHHHHHHHcCCC-CcE
Confidence 4799999999999998776332 1235788888642 11111111 11111 112
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
- -+.+++.+-+.+.+++|.+++..+++++ |. .-.+-|+|||+|
T Consensus 127 ~--~~~~d~~~~~~~~~~fD~Ii~~~~~~~~---~~--------------------------------~l~~~L~~gG~l 169 (205)
T PRK13944 127 E--VYHGDGKRGLEKHAPFDAIIVTAAASTI---PS--------------------------------ALVRQLKDGGVL 169 (205)
T ss_pred E--EEECCcccCCccCCCccEEEEccCcchh---hH--------------------------------HHHHhcCcCcEE
Confidence 1 2235665545556799999999998764 32 113569999999
Q ss_pred EEEEe
Q 036911 208 LLSII 212 (359)
Q Consensus 208 ~~~~~ 212 (359)
++...
T Consensus 170 vi~~~ 174 (205)
T PRK13944 170 VIPVE 174 (205)
T ss_pred EEEEc
Confidence 88763
No 75
>PTZ00146 fibrillarin; Provisional
Probab=98.11 E-value=6.5e-05 Score=72.23 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=36.4
Q ss_pred HHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCC
Q 036911 18 YANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDL 97 (359)
Q Consensus 18 Y~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 97 (359)
|-.=...+.+.++.++-=| ..+. .....+|||+|||+|..|..+...+ .++-.||..|+
T Consensus 107 yR~w~p~rSKlaa~i~~g~----~~l~---IkpG~~VLDLGaG~G~~t~~lAdiV--------------G~~G~VyAVD~ 165 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGV----ANIP---IKPGSKVLYLGAASGTTVSHVSDLV--------------GPEGVVYAVEF 165 (293)
T ss_pred eeeeCCcccHHHHHHHCCc----ceec---cCCCCEEEEeCCcCCHHHHHHHHHh--------------CCCCEEEEEEC
Confidence 5555566655554432211 2121 1234699999999999888776433 23467888886
Q ss_pred C
Q 036911 98 P 98 (359)
Q Consensus 98 p 98 (359)
.
T Consensus 166 s 166 (293)
T PTZ00146 166 S 166 (293)
T ss_pred c
Confidence 4
No 76
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.07 E-value=0.00016 Score=70.51 Aligned_cols=27 Identities=15% Similarity=0.445 Sum_probs=23.0
Q ss_pred ccCCCHHHHHHHHhcCCceEEeEEEEEe
Q 036911 254 YYAPSPEEVRHVIQTEGSFNIRRFDIHT 281 (359)
Q Consensus 254 ~y~~s~~E~~~~i~~~Gsf~i~~~e~~~ 281 (359)
.|+.+.+|+++++++.| |+|.+.+...
T Consensus 275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~ 301 (315)
T PLN02585 275 AYLHAEADVERALKKAG-WKVARREMTA 301 (315)
T ss_pred eeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence 46779999999999999 9998877654
No 77
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.05 E-value=8.1e-06 Score=80.46 Aligned_cols=107 Identities=16% Similarity=0.221 Sum_probs=67.7
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..++.+. ++ .|..+|+..|... ..+ ......+. ..+. ...+
T Consensus 197 ~g~VLDlGCG~G~ls~~la--------~~-------~p~~~v~~vDis~---~Al----~~A~~nl~-~n~l--~~~~-- 249 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLA--------RH-------SPKIRLTLSDVSA---AAL----ESSRATLA-ANGL--EGEV-- 249 (342)
T ss_pred CCeEEEeccCcCHHHHHHH--------Hh-------CCCCEEEEEECCH---HHH----HHHHHHHH-HcCC--CCEE--
Confidence 3589999999999888776 22 2567899999742 111 11111111 1111 1122
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
+.++.+.. .++++|+|+|+-.+||.-..- ......|++.-++-|+|||.|+++
T Consensus 250 -~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~------------------------~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 250 -FASNVFSD--IKGRFDMIISNPPFHDGIQTS------------------------LDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred -EEcccccc--cCCCccEEEECCCccCCcccc------------------------HHHHHHHHHHHHHhcCcCCEEEEE
Confidence 23455442 367899999999999832211 124457898989999999999887
Q ss_pred E
Q 036911 211 I 211 (359)
Q Consensus 211 ~ 211 (359)
.
T Consensus 303 a 303 (342)
T PRK09489 303 A 303 (342)
T ss_pred E
Confidence 6
No 78
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.05 E-value=2.5e-05 Score=70.74 Aligned_cols=105 Identities=19% Similarity=0.323 Sum_probs=65.2
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeE
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCF 128 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f 128 (359)
+..-+++|+|||.|.+|..|+ .+| -.+...|+.. .-.+..++......+-.|
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA--------~rC---------d~LlavDis~-----------~Al~~Ar~Rl~~~~~V~~ 93 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLA--------PRC---------DRLLAVDISP-----------RALARARERLAGLPHVEW 93 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHG--------GGE---------EEEEEEES-H-----------HHHHHHHHHTTT-SSEEE
T ss_pred cccceeEecCCCccHHHHHHH--------Hhh---------CceEEEeCCH-----------HHHHHHHHhcCCCCCeEE
Confidence 346799999999999999887 444 4566667631 111222222222222223
Q ss_pred Eec-ccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 129 IAG-IPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 129 ~~~-v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
..+ +| ...|++++|+++-+-.+++|+.. .|+..++..-.+-|.|||.|
T Consensus 94 ~~~dvp-----~~~P~~~FDLIV~SEVlYYL~~~--------------------------~~L~~~l~~l~~~L~pgG~L 142 (201)
T PF05401_consen 94 IQADVP-----EFWPEGRFDLIVLSEVLYYLDDA--------------------------EDLRAALDRLVAALAPGGHL 142 (201)
T ss_dssp EES-TT-----T---SS-EEEEEEES-GGGSSSH--------------------------HHHHHHHHHHHHTEEEEEEE
T ss_pred EECcCC-----CCCCCCCeeEEEEehHhHcCCCH--------------------------HHHHHHHHHHHHHhCCCCEE
Confidence 332 44 34599999999999999998762 35667888889999999999
Q ss_pred EEEEe
Q 036911 208 LLSII 212 (359)
Q Consensus 208 ~~~~~ 212 (359)
|+-..
T Consensus 143 V~g~~ 147 (201)
T PF05401_consen 143 VFGHA 147 (201)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99765
No 79
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.03 E-value=1.7e-05 Score=70.31 Aligned_cols=108 Identities=20% Similarity=0.255 Sum_probs=67.1
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~ 126 (359)
...+|+|+|||+|..++.+. ++ .|...|+..|.-. ......+. ..+. ..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la--------~~-------~~~~~v~~vDi~~-----------~a~~~a~~n~~~n~~--~~ 82 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALA--------KR-------GPDAKVTAVDINP-----------DALELAKRNAERNGL--EN 82 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHH--------HT-------STCEEEEEEESBH-----------HHHHHHHHHHHHTTC--TT
T ss_pred cCCeEEEecCChHHHHHHHH--------Hh-------CCCCEEEEEcCCH-----------HHHHHHHHHHHhcCc--cc
Confidence 35789999999999999886 32 2557899999742 11111111 1222 22
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
+..+..+.++.+. ++++|+++|+-=+|+-.+ ....-+..|++.-.+-|+|||.
T Consensus 83 --v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~------------------------~~~~~~~~~i~~a~~~Lk~~G~ 135 (170)
T PF05175_consen 83 --VEVVQSDLFEALP-DGKFDLIVSNPPFHAGGD------------------------DGLDLLRDFIEQARRYLKPGGR 135 (170)
T ss_dssp --EEEEESSTTTTCC-TTCEEEEEE---SBTTSH------------------------CHHHHHHHHHHHHHHHEEEEEE
T ss_pred --ccccccccccccc-ccceeEEEEccchhcccc------------------------cchhhHHHHHHHHHHhccCCCE
Confidence 3334567776554 799999999533222110 0123356788888999999999
Q ss_pred EEEEEe
Q 036911 207 VLLSII 212 (359)
Q Consensus 207 l~~~~~ 212 (359)
+++..-
T Consensus 136 l~lv~~ 141 (170)
T PF05175_consen 136 LFLVIN 141 (170)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 988664
No 80
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.02 E-value=7.9e-05 Score=68.07 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=69.1
Q ss_pred CCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCe
Q 036911 48 LPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPC 127 (359)
Q Consensus 48 ~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~ 127 (359)
.|+...|||+|||.+..+..+- ....|+-=||...+ +.+
T Consensus 70 ~~~~~viaD~GCGdA~la~~~~------------------~~~~V~SfDLva~n-----------------------~~V 108 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLAKAVP------------------NKHKVHSFDLVAPN-----------------------PRV 108 (219)
T ss_dssp S-TTS-EEEES-TT-HHHHH--------------------S---EEEEESS-SS-----------------------TTE
T ss_pred cCCCEEEEECCCchHHHHHhcc------------------cCceEEEeeccCCC-----------------------CCE
Confidence 3557899999999998763221 12567766875310 112
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
-+ .+.-..+++++|+|+++.+.||.= .||..||+--.+-|||||.|
T Consensus 109 ta----cdia~vPL~~~svDv~VfcLSLMG------------------------------Tn~~~fi~EA~RvLK~~G~L 154 (219)
T PF05148_consen 109 TA----CDIANVPLEDESVDVAVFCLSLMG------------------------------TNWPDFIREANRVLKPGGIL 154 (219)
T ss_dssp EE----S-TTS-S--TT-EEEEEEES---S------------------------------S-HHHHHHHHHHHEEEEEEE
T ss_pred EE----ecCccCcCCCCceeEEEEEhhhhC------------------------------CCcHHHHHHHHheeccCcEE
Confidence 11 355577889999999999887753 35677999999999999999
Q ss_pred EEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEE
Q 036911 208 LLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDI 279 (359)
Q Consensus 208 ~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~ 279 (359)
.+.-.-.. +.+.+++...++.-| |++.+...
T Consensus 155 ~IAEV~SR----------------------------------------f~~~~~F~~~~~~~G-F~~~~~d~ 185 (219)
T PF05148_consen 155 KIAEVKSR----------------------------------------FENVKQFIKALKKLG-FKLKSKDE 185 (219)
T ss_dssp EEEEEGGG-----------------------------------------S-HHHHHHHHHCTT-EEEEEEE-
T ss_pred EEEEeccc----------------------------------------CcCHHHHHHHHHHCC-CeEEeccc
Confidence 88764321 125778888899889 99888654
No 81
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.01 E-value=1.5e-05 Score=79.57 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=70.5
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHH-HHhhCCCCCCeEE
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKL-KEVKGSNFGPCFI 129 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~-~~~~~~~~~~~f~ 129 (359)
...++|+|||+|..++.++ ++ .|+..++.-|+... ....+ +........++.+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA--------~~-------~P~~~~iGIEI~~~-----------~i~~a~~ka~~~gL~NV~~ 176 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQA--------KN-------NPNKLFIGIEIHTP-----------SIEQVLKQIELLNLKNLLI 176 (390)
T ss_pred CCeEEEEcCcccHHHHHHH--------Hh-------CCCCCEEEEECCHH-----------HHHHHHHHHHHcCCCcEEE
Confidence 4589999999999988877 22 26789999997421 11111 1111111234433
Q ss_pred ecccCCcc--cCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 130 AGIPGSFY--GRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 130 ~~v~gsFy--~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
. .++.. -..+|++++|.++.++...|..+.-. ++ -...||+.-++-|+|||.+
T Consensus 177 i--~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHR-------------Rl----------v~~~fL~e~~RvLkpGG~l 231 (390)
T PRK14121 177 I--NYDARLLLELLPSNSVEKIFVHFPVPWDKKPHR-------------RV----------ISEDFLNEALRVLKPGGTL 231 (390)
T ss_pred E--ECCHHHhhhhCCCCceeEEEEeCCCCccccchh-------------hc----------cHHHHHHHHHHHcCCCcEE
Confidence 3 34442 24689999999999888888322100 00 1245999999999999999
Q ss_pred EEEE
Q 036911 208 LLSI 211 (359)
Q Consensus 208 ~~~~ 211 (359)
.+.+
T Consensus 232 ~l~T 235 (390)
T PRK14121 232 ELRT 235 (390)
T ss_pred EEEE
Confidence 8877
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=98.00 E-value=6e-05 Score=69.59 Aligned_cols=168 Identities=14% Similarity=0.076 Sum_probs=86.5
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..++.+.. . ...+++..|+... .+. ....... ..+. + +.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~--------~--------~~~~v~~vD~s~~---~l~----~a~~n~~-~~~~--~---~~ 87 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAA--------A--------GAGSVTAVDISRR---AVR----SARLNAL-LAGV--D---VD 87 (223)
T ss_pred CCeEEEecCCHHHHHHHHHH--------c--------CCCeEEEEECCHH---HHH----HHHHHHH-HhCC--e---eE
Confidence 46999999999998887651 1 1147788887421 110 0000011 1111 1 12
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
.+-+++.. .++++++|+++++--.+..+.. ...+ ......+. ........+..|++.-.+-|+|||++++.
T Consensus 88 ~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~--~~~~-----~~~~~~~~-~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 88 VRRGDWAR-AVEFRPFDVVVSNPPYVPAPPD--APPS-----RGPARAWD-AGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred EEECchhh-hccCCCeeEEEECCCCCCCCcc--cccc-----cChhHhhh-CCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 23367765 4577899999996432221111 0000 00000110 01112445677888888999999999987
Q ss_pred EecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCC
Q 036911 211 IIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEG 270 (359)
Q Consensus 211 ~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~G 270 (359)
.....+ +.++++.+...|+ ..+.+....+|+ -+..-....++++.|
T Consensus 159 ~~~~~~------------~~~~~~~l~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (223)
T PRK14967 159 QSELSG------------VERTLTRLSEAGL-DAEVVASQWIPF-GPVLRARAAWLERRG 204 (223)
T ss_pred EecccC------------HHHHHHHHHHCCC-CeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence 654433 2344445544553 444444555564 222223445667777
No 83
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.97 E-value=2.4e-05 Score=68.64 Aligned_cols=109 Identities=14% Similarity=0.055 Sum_probs=67.6
Q ss_pred CCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEec
Q 036911 134 GSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIG 213 (359)
Q Consensus 134 gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g 213 (359)
|+.....++++++|++++++++||+.+.. .+|+.-++-|+|||.+++.-++
T Consensus 33 ~d~~~lp~~~~~fD~v~~~~~l~~~~d~~-----------------------------~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 33 GDAIDLPFDDCEFDAVTMGYGLRNVVDRL-----------------------------RAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred echhhCCCCCCCeeEEEecchhhcCCCHH-----------------------------HHHHHHHHHcCcCeEEEEEECC
Confidence 57777788999999999999999975422 4888999999999999999887
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCC-cC---ccCCCHHHHHHHHhcCCceEEeEE
Q 036911 214 NDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFN-LP---YYAPSPEEVRHVIQTEGSFNIRRF 277 (359)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~-~P---~y~~s~~E~~~~i~~~Gsf~i~~~ 277 (359)
..+ .......+..... .-+..-|.+... ...+. +| ..+++++|+.+++++.| |+..+.
T Consensus 84 ~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~~ 145 (160)
T PLN02232 84 KSN--QSVTTFMQGWMID--NVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSACH 145 (160)
T ss_pred CCC--hHHHHHHHHHHcc--chHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcceE
Confidence 755 2110111100000 000001111110 11111 11 24789999999999999 875443
No 84
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.93 E-value=6.2e-05 Score=69.09 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=60.1
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~ 126 (359)
...+|+|+|||+|.+|..+.+.. .++.+|+..|... ......++ ..+.. +.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~--------------~~~g~V~~vD~~~-----------~~~~~A~~~~~~~g~~-~v 130 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIV--------------GRDGLVVSIERIP-----------ELAEKAERRLRKLGLD-NV 130 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCH-----------HHHHHHHHHHHHCCCC-Ce
Confidence 35799999999999998776332 2346788888641 11111111 11211 22
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
.++. ++....+.+.+++|++++..+.+. +|. .-.+.|+|||+
T Consensus 131 ~~~~---~d~~~~~~~~~~fD~Ii~~~~~~~---~~~--------------------------------~~~~~L~~gG~ 172 (215)
T TIGR00080 131 IVIV---GDGTQGWEPLAPYDRIYVTAAGPK---IPE--------------------------------ALIDQLKEGGI 172 (215)
T ss_pred EEEE---CCcccCCcccCCCCEEEEcCCccc---ccH--------------------------------HHHHhcCcCcE
Confidence 3333 566555555678999998766443 221 22456999999
Q ss_pred EEEEEe
Q 036911 207 VLLSII 212 (359)
Q Consensus 207 l~~~~~ 212 (359)
|++...
T Consensus 173 lv~~~~ 178 (215)
T TIGR00080 173 LVMPVG 178 (215)
T ss_pred EEEEEc
Confidence 998763
No 85
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.92 E-value=1.7e-05 Score=73.66 Aligned_cols=151 Identities=19% Similarity=0.124 Sum_probs=90.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh---hCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV---KGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~---~~~~~~~~ 127 (359)
-.+|+|+|||-|..|..++ + .-..|+..|+.. ...+-.+.+ .+.. --
T Consensus 60 g~~vLDvGCGgG~Lse~mA--------r---------~Ga~VtgiD~se-----------~~I~~Ak~ha~e~gv~--i~ 109 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLA--------R---------LGASVTGIDASE-----------KPIEVAKLHALESGVN--ID 109 (243)
T ss_pred CCeEEEecCCccHhhHHHH--------H---------CCCeeEEecCCh-----------HHHHHHHHhhhhcccc--cc
Confidence 4799999999998777665 2 128999999852 111212211 1111 01
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
|.. +.-.+.....+++|+|.|.=.|+-+.+ | ..|+++.++-+||||.|
T Consensus 110 y~~---~~~edl~~~~~~FDvV~cmEVlEHv~d-p----------------------------~~~~~~c~~lvkP~G~l 157 (243)
T COG2227 110 YRQ---ATVEDLASAGGQFDVVTCMEVLEHVPD-P----------------------------ESFLRACAKLVKPGGIL 157 (243)
T ss_pred chh---hhHHHHHhcCCCccEEEEhhHHHccCC-H----------------------------HHHHHHHHHHcCCCcEE
Confidence 211 233345555589999999666665444 2 13999999999999999
Q ss_pred EEEEecCCCCCCCCchhHH--HHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEE
Q 036911 208 LLSIIGNDRKPGDPRCTGW--ELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDI 279 (359)
Q Consensus 208 ~~~~~g~~~~~~~~~~~~~--~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~ 279 (359)
+++++.|.- . .... -..+-+++ ++-.|--+-+ -+-.++|+..++...| +++....-
T Consensus 158 f~STinrt~--k---a~~~~i~~ae~vl~-~vP~gTH~~~---------k~irp~El~~~~~~~~-~~~~~~~g 215 (243)
T COG2227 158 FLSTINRTL--K---AYLLAIIGAEYVLR-IVPKGTHDYR---------KFIKPAELIRWLLGAN-LKIIDRKG 215 (243)
T ss_pred EEeccccCH--H---HHHHHHHHHHHHHH-hcCCcchhHH---------HhcCHHHHHHhcccCC-ceEEeecc
Confidence 999987754 1 1111 11122222 4444432222 1346788888887766 67666543
No 86
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.91 E-value=8.8e-05 Score=71.27 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=68.8
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~ 127 (359)
+.+|+|+|||+|..++.+.... |..+++..|+.. ......+. ..+...+-.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~---------------~~~~v~avDis~-----------~al~~A~~n~~~~~~~~~i~ 175 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF---------------PEAEVDAVDISP-----------DALAVAEINIERHGLEDRVT 175 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC---------------CCCEEEEEECCH-----------HHHHHHHHHHHHcCCCCcEE
Confidence 4699999999999998887322 457899999842 11111111 112111112
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCc-----ceeecCCCCccccHHHHHHHHHHhhc
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKG-----HICMAKTSPVGRDFTLFLTSRSEEIL 202 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g-----~i~~~~~~~~~~d~~~fL~~Ra~EL~ 202 (359)
|+ .+++.+. +|++++|+++|+ |+-+....-....+. ..-..+........+.|++.-.+-|+
T Consensus 176 ~~---~~D~~~~-~~~~~fD~Iv~N---------PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~ 242 (284)
T TIGR03533 176 LI---QSDLFAA-LPGRKYDLIVSN---------PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN 242 (284)
T ss_pred EE---ECchhhc-cCCCCccEEEEC---------CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 33 3566543 466789999995 433321110000000 00000111124556788988899999
Q ss_pred cCceEEEEEe
Q 036911 203 SGGHVLLSII 212 (359)
Q Consensus 203 pGG~l~~~~~ 212 (359)
|||++++.+.
T Consensus 243 ~gG~l~~e~g 252 (284)
T TIGR03533 243 ENGVLVVEVG 252 (284)
T ss_pred CCCEEEEEEC
Confidence 9999988764
No 87
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.91 E-value=6.1e-05 Score=69.20 Aligned_cols=81 Identities=15% Similarity=0.016 Sum_probs=47.4
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh-CCCCCCeE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK-GSNFGPCF 128 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~-~~~~~~~f 128 (359)
...+|+|+|||+|..|..+.+.+ .+..+|+.-|.-. ......++.. .....++
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~--------------~~~~~V~~vE~~~-----------~~~~~a~~~l~~~g~~~v- 129 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIV--------------GKSGKVVTIERIP-----------ELAEKAKKTLKKLGYDNV- 129 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhc--------------CCCCEEEEEeCCH-----------HHHHHHHHHHHHcCCCCe-
Confidence 35799999999999998776322 1335777777531 1111111110 0111222
Q ss_pred EecccCCcccCCCCCCceeEEEecccccc
Q 036911 129 IAGIPGSFYGRLFPNKSLHFVHSSYSLHW 157 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~~S~d~~~S~~alhW 157 (359)
..+.|+....+.+.+.+|++++..+++.
T Consensus 130 -~~~~gd~~~~~~~~~~fD~I~~~~~~~~ 157 (212)
T PRK13942 130 -EVIVGDGTLGYEENAPYDRIYVTAAGPD 157 (212)
T ss_pred -EEEECCcccCCCcCCCcCEEEECCCccc
Confidence 2234666655667789999999877644
No 88
>PHA03411 putative methyltransferase; Provisional
Probab=97.91 E-value=0.00011 Score=70.07 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=71.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..++.+.. + .+..+|+..|+.. ......+.... +..+
T Consensus 65 ~grVLDLGcGsGilsl~la~--------r-------~~~~~V~gVDisp-----------~al~~Ar~n~~---~v~~-- 113 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLH--------R-------CKPEKIVCVELNP-----------EFARIGKRLLP---EAEW-- 113 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHH--------h-------CCCCEEEEEECCH-----------HHHHHHHHhCc---CCEE--
Confidence 46999999999988776652 2 1236888889742 11111111110 1223
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccc--cHHHHHHHHHHhhccCceEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGR--DFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~--d~~~fL~~Ra~EL~pGG~l~ 208 (359)
+.+++.... ++.++|+|+|+-.++++..... .+ ....++...+.+ .+..||+..+.-|+|+|.+.
T Consensus 114 -v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~--~~---------~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 114 -ITSDVFEFE-SNEKFDVVISNPPFGKINTTDT--KD---------VFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred -EECchhhhc-ccCCCcEEEEcCCccccCchhh--hh---------hhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 335765433 4578999999999988643211 10 011111222222 25789999999999999887
Q ss_pred EEEecC
Q 036911 209 LSIIGN 214 (359)
Q Consensus 209 ~~~~g~ 214 (359)
+..-|+
T Consensus 181 ~~yss~ 186 (279)
T PHA03411 181 FAYSGR 186 (279)
T ss_pred EEEecc
Confidence 775443
No 89
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.85 E-value=8.4e-05 Score=69.06 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=71.0
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~ 126 (359)
...+|+|+|||+|..+..+++.. |..+++..|+.. ......+. ..+. .+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~---------------~~~~v~~iD~~~-----------~~~~~a~~~~~~~~~--~~ 138 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER---------------PDARVTAVDISP-----------EALAVARKNAARLGL--DN 138 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC---------------CCCEEEEEECCH-----------HHHHHHHHHHHHcCC--Ce
Confidence 34699999999999988776321 447888888642 11111111 1121 12
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccC---CCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhcc
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQV---PEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILS 203 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~---p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~p 203 (359)
+ .-+.+++.. .++++++|+++|+--.+..+.. +..+.. +..... ..+......++..|++.-.+.|+|
T Consensus 139 ~--~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~-----~e~~~~-~~~~~~~~~~~~~~i~~~~~~L~~ 209 (251)
T TIGR03534 139 V--TFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRF-----HEPRLA-LFGGEDGLDFYRRIIAQAPRLLKP 209 (251)
T ss_pred E--EEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhh-----cCCHHH-HcCCCcHHHHHHHHHHHHHHhccc
Confidence 2 223467765 5678899999996443332221 110000 000000 011122356678899999999999
Q ss_pred CceEEEEE
Q 036911 204 GGHVLLSI 211 (359)
Q Consensus 204 GG~l~~~~ 211 (359)
||.+++..
T Consensus 210 gG~~~~~~ 217 (251)
T TIGR03534 210 GGWLLLEI 217 (251)
T ss_pred CCEEEEEE
Confidence 99998864
No 90
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.82 E-value=0.00015 Score=69.59 Aligned_cols=122 Identities=18% Similarity=0.228 Sum_probs=69.1
Q ss_pred ceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCeE
Q 036911 52 LKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPCF 128 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~f 128 (359)
.+|+|+|||+|..++.++... |..+++..|+... .....+. ..+...+-.|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~---------------~~~~v~avDis~~-----------al~~a~~n~~~~~~~~~v~~ 169 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF---------------PNAEVIAVDISPD-----------ALAVAEENAEKNQLEHRVEF 169 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC---------------CCCEEEEEECCHH-----------HHHHHHHHHHHcCCCCcEEE
Confidence 699999999999888876322 4578999997421 1111111 1121101223
Q ss_pred EecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCc-----ceeecCCCCccccHHHHHHHHHHhhcc
Q 036911 129 IAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKG-----HICMAKTSPVGRDFTLFLTSRSEEILS 203 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g-----~i~~~~~~~~~~d~~~fL~~Ra~EL~p 203 (359)
+.+++++. ++++++|+++|+ |+-+....-...... .....+......+.+.+++.-.+-|+|
T Consensus 170 ---~~~d~~~~-~~~~~fDlIvsN---------PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~ 236 (284)
T TIGR00536 170 ---IQSNLFEP-LAGQKIDIIVSN---------PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP 236 (284)
T ss_pred ---EECchhcc-CcCCCccEEEEC---------CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 33566653 455689999994 333322110000000 000111122256788999988899999
Q ss_pred CceEEEEEe
Q 036911 204 GGHVLLSII 212 (359)
Q Consensus 204 GG~l~~~~~ 212 (359)
||++++.+.
T Consensus 237 gG~l~~e~g 245 (284)
T TIGR00536 237 NGFLVCEIG 245 (284)
T ss_pred CCEEEEEEC
Confidence 999988774
No 91
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.82 E-value=0.00019 Score=69.81 Aligned_cols=121 Identities=15% Similarity=0.175 Sum_probs=67.5
Q ss_pred ceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh---hCCCCCCeE
Q 036911 52 LKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV---KGSNFGPCF 128 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~---~~~~~~~~f 128 (359)
.+|+|+|||+|..++.+... .|..+++..|+.. ......+.. .+...+-.|
T Consensus 135 ~~VLDlG~GsG~iai~la~~---------------~p~~~V~avDis~-----------~al~~A~~n~~~~~l~~~i~~ 188 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA---------------FPDAEVDAVDISP-----------DALAVAEINIERHGLEDRVTL 188 (307)
T ss_pred CEEEEEechhhHHHHHHHHH---------------CCCCEEEEEeCCH-----------HHHHHHHHHHHHhCCCCcEEE
Confidence 68999999999988877632 1558899999842 111111111 121111223
Q ss_pred EecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCC-----cceeecCCCCccccHHHHHHHHHHhhcc
Q 036911 129 IAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNK-----GHICMAKTSPVGRDFTLFLTSRSEEILS 203 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~-----g~i~~~~~~~~~~d~~~fL~~Ra~EL~p 203 (359)
+.+++.+. +|++++|+++|+ |+-+....-..... -..-..+........+.|++.-.+-|+|
T Consensus 189 ---~~~D~~~~-l~~~~fDlIvsN---------PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p 255 (307)
T PRK11805 189 ---IESDLFAA-LPGRRYDLIVSN---------PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE 255 (307)
T ss_pred ---EECchhhh-CCCCCccEEEEC---------CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC
Confidence 34676553 366789999995 33222110000000 0000111112245567889888889999
Q ss_pred CceEEEEE
Q 036911 204 GGHVLLSI 211 (359)
Q Consensus 204 GG~l~~~~ 211 (359)
||++++.+
T Consensus 256 gG~l~~E~ 263 (307)
T PRK11805 256 DGVLVVEV 263 (307)
T ss_pred CCEEEEEE
Confidence 99999865
No 92
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.80 E-value=0.00042 Score=63.30 Aligned_cols=155 Identities=13% Similarity=0.132 Sum_probs=92.5
Q ss_pred eEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhC--CCCCCeEEe
Q 036911 53 KIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKG--SNFGPCFIA 130 (359)
Q Consensus 53 ~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~--~~~~~~f~~ 130 (359)
+|+|+|||||--+.-+.+.+ |.+++.=+|+..+-+.++-.-+ .+.+ ...++..+=
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l---------------P~l~WqPSD~~~~~~~sI~a~~--------~~~~~~Nv~~P~~lD 84 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL---------------PHLTWQPSDPDDNLRPSIRAWI--------AEAGLPNVRPPLALD 84 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC---------------CCCEEcCCCCChHHHhhHHHHH--------HhcCCcccCCCeEee
Confidence 69999999998777666433 6788888898766443332211 1111 011122211
Q ss_pred cccCCc--cc--CCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 131 GIPGSF--YG--RLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 131 ~v~gsF--y~--~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
. .... .. -.+..+++|.++|.+.+|-++--- . ..+++.-++.|+|||.
T Consensus 85 v-~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~---~------------------------~~lf~~a~~~L~~gG~ 136 (204)
T PF06080_consen 85 V-SAPPWPWELPAPLSPESFDAIFCINMLHISPWSA---V------------------------EGLFAGAARLLKPGGL 136 (204)
T ss_pred c-CCCCCccccccccCCCCcceeeehhHHHhcCHHH---H------------------------HHHHHHHHHhCCCCCE
Confidence 1 0000 00 112568999999999999855421 1 2478888999999999
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEe
Q 036911 207 VLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIR 275 (359)
Q Consensus 207 l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~ 275 (359)
|++--+=..+ +..+..-=..+...|++ -+.-|-.+..+++.++-.+.| +++.
T Consensus 137 L~~YGPF~~~--G~~ts~SN~~FD~sLr~--------------rdp~~GiRD~e~v~~lA~~~G-L~l~ 188 (204)
T PF06080_consen 137 LFLYGPFNRD--GKFTSESNAAFDASLRS--------------RDPEWGIRDIEDVEALAAAHG-LELE 188 (204)
T ss_pred EEEeCCcccC--CEeCCcHHHHHHHHHhc--------------CCCCcCccCHHHHHHHHHHCC-CccC
Confidence 9887664444 22211111223333333 133467899999999999888 5543
No 93
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.78 E-value=0.00014 Score=66.52 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=57.6
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~ 126 (359)
...+|+|+|||+|..|..+.... .+++.-|... ......++ ..+. .+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~-----------------~~v~~vd~~~-----------~~~~~a~~~~~~~~~--~~ 127 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV-----------------RRVFSVERIK-----------TLQWEAKRRLKQLGL--HN 127 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh-----------------CEEEEEeCCH-----------HHHHHHHHHHHHCCC--Cc
Confidence 35899999999999988554211 2456666531 11111111 1111 12
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
+..+.+++.+.+.+.+++|++++..+++++ |. .-.+-|+|||+
T Consensus 128 --v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~---~~--------------------------------~l~~~L~~gG~ 170 (212)
T PRK00312 128 --VSVRHGDGWKGWPAYAPFDRILVTAAAPEI---PR--------------------------------ALLEQLKEGGI 170 (212)
T ss_pred --eEEEECCcccCCCcCCCcCEEEEccCchhh---hH--------------------------------HHHHhcCCCcE
Confidence 223345655444455899999998877764 32 12467999999
Q ss_pred EEEEEe
Q 036911 207 VLLSII 212 (359)
Q Consensus 207 l~~~~~ 212 (359)
+++...
T Consensus 171 lv~~~~ 176 (212)
T PRK00312 171 LVAPVG 176 (212)
T ss_pred EEEEEc
Confidence 999875
No 94
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.78 E-value=0.00011 Score=67.67 Aligned_cols=143 Identities=22% Similarity=0.349 Sum_probs=84.0
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCc-ceEEecCCCCCchhhhhhcccchHHHHHHhhCC---CCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPM-YQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGS---NFG 125 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~-~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~---~~~ 125 (359)
...+.+|.|||.|+-|-.++ .|. -+|-+.|. .+.|.+.+++..+. ...
T Consensus 55 ~~~~alDcGAGIGRVTk~lL-----------------l~~f~~VDlVEp-----------~~~Fl~~a~~~l~~~~~~v~ 106 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLL-----------------LPVFDEVDLVEP-----------VEKFLEQAKEYLGKDNPRVG 106 (218)
T ss_dssp --SEEEEET-TTTHHHHHTC-----------------CCC-SEEEEEES------------HHHHHHHHHHTCCGGCCEE
T ss_pred CcceEEecccccchhHHHHH-----------------HHhcCEeEEecc-----------CHHHHHHHHHHhcccCCCcc
Confidence 47899999999999988665 121 22322231 12344434332222 223
Q ss_pred CeEEecccCCcccCCCCC-CceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccC
Q 036911 126 PCFIAGIPGSFYGRLFPN-KSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSG 204 (359)
Q Consensus 126 ~~f~~~v~gsFy~~lfp~-~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pG 204 (359)
.+|.+|.- +| -|+ +.+|+||.-|++-.|.+ .|+..||+...+.|+||
T Consensus 107 ~~~~~gLQ-~f----~P~~~~YDlIW~QW~lghLTD---------------------------~dlv~fL~RCk~~L~~~ 154 (218)
T PF05891_consen 107 EFYCVGLQ-DF----TPEEGKYDLIWIQWCLGHLTD---------------------------EDLVAFLKRCKQALKPN 154 (218)
T ss_dssp EEEES-GG-G--------TT-EEEEEEES-GGGS-H---------------------------HHHHHHHHHHHHHEEEE
T ss_pred eEEecCHh-hc----cCCCCcEeEEEehHhhccCCH---------------------------HHHHHHHHHHHHhCcCC
Confidence 56666643 33 354 79999999777777665 58889999999999999
Q ss_pred ceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEE
Q 036911 205 GHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIH 280 (359)
Q Consensus 205 G~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~ 280 (359)
|.+++=--...+ . ....++ .| -...||.+.++.++++.| ++|.+.+..
T Consensus 155 G~IvvKEN~~~~--~-------------------~~~~D~--~D----sSvTRs~~~~~~lF~~AG-l~~v~~~~Q 202 (218)
T PF05891_consen 155 GVIVVKENVSSS--G-------------------FDEFDE--ED----SSVTRSDEHFRELFKQAG-LRLVKEEKQ 202 (218)
T ss_dssp EEEEEEEEEESS--S-------------------EEEEET--TT----TEEEEEHHHHHHHHHHCT--EEEEEEE-
T ss_pred cEEEEEecCCCC--C-------------------CcccCC--cc----CeeecCHHHHHHHHHHcC-CEEEEeccc
Confidence 998875322222 0 001111 12 347789999999999999 888776653
No 95
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.76 E-value=0.00029 Score=66.32 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.8
Q ss_pred HHHHHHHhhccCceEEEEEec
Q 036911 193 FLTSRSEEILSGGHVLLSIIG 213 (359)
Q Consensus 193 fL~~Ra~EL~pGG~l~~~~~g 213 (359)
++..-.+-|+|||+++++.+.
T Consensus 195 l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 195 LAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred HHHHHHHhcCCCcEEEEEECc
Confidence 666678889999999987543
No 96
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.76 E-value=0.00018 Score=65.58 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=68.1
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCC--CeE
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFG--PCF 128 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~--~~f 128 (359)
..-|+++|||||+|=-- | +..|--.|++-| |+.-| ..+..+-..++ .+. ..|
T Consensus 77 K~~vLEvgcGtG~Nfkf------------y----~~~p~~svt~lD-pn~~m-------ee~~~ks~~E~--k~~~~~~f 130 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKF------------Y----PWKPINSVTCLD-PNEKM-------EEIADKSAAEK--KPLQVERF 130 (252)
T ss_pred ccceEEecccCCCCccc------------c----cCCCCceEEEeC-CcHHH-------HHHHHHHHhhc--cCcceEEE
Confidence 56789999999998321 1 123567888888 42211 12222111111 111 357
Q ss_pred EecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 129 IAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
+.|-+-+.-+ ++++|+|.|+....|-=.. |-..-|+.-.+-|+|||+++
T Consensus 131 vva~ge~l~~--l~d~s~DtVV~TlvLCSve-----------------------------~~~k~L~e~~rlLRpgG~ii 179 (252)
T KOG4300|consen 131 VVADGENLPQ--LADGSYDTVVCTLVLCSVE-----------------------------DPVKQLNEVRRLLRPGGRII 179 (252)
T ss_pred EeechhcCcc--cccCCeeeEEEEEEEeccC-----------------------------CHHHHHHHHHHhcCCCcEEE
Confidence 7776644311 3999999999977664322 22346777789999999999
Q ss_pred EEEecCCC
Q 036911 209 LSIIGNDR 216 (359)
Q Consensus 209 ~~~~g~~~ 216 (359)
|.--|+..
T Consensus 180 fiEHva~~ 187 (252)
T KOG4300|consen 180 FIEHVAGE 187 (252)
T ss_pred EEeccccc
Confidence 99988877
No 97
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.74 E-value=0.00023 Score=63.88 Aligned_cols=107 Identities=17% Similarity=0.186 Sum_probs=64.3
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
...+|+|+|||+|..|..+.... .+...++..|+...- ..+ +-.++
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~--------------~~~~~v~~vDis~~~------~~~--------------~i~~~ 77 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQV--------------GGKGRVIAVDLQPMK------PIE--------------NVDFI 77 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHh--------------CCCceEEEEeccccc------cCC--------------CceEE
Confidence 45799999999999888776332 123567777874210 000 11222
Q ss_pred ecccCCcccC--------CCCCCceeEEEeccccc----ccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHH
Q 036911 130 AGIPGSFYGR--------LFPNKSLHFVHSSYSLH----WLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSR 197 (359)
Q Consensus 130 ~~v~gsFy~~--------lfp~~S~d~~~S~~alh----Wls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~R 197 (359)
. +++.+. .++.+++|+++|..+.| |..+.+. ...+...+|+.-
T Consensus 78 ~---~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~----------------------~~~~~~~~l~~~ 132 (188)
T TIGR00438 78 R---GDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLR----------------------SIDLVELALDIA 132 (188)
T ss_pred E---eeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHH----------------------HHHHHHHHHHHH
Confidence 2 233321 35778899999976532 3221111 012345688888
Q ss_pred HHhhccCceEEEEEecCC
Q 036911 198 SEEILSGGHVLLSIIGND 215 (359)
Q Consensus 198 a~EL~pGG~l~~~~~g~~ 215 (359)
.+-|+|||++++..+...
T Consensus 133 ~~~LkpgG~lvi~~~~~~ 150 (188)
T TIGR00438 133 KEVLKPKGNFVVKVFQGE 150 (188)
T ss_pred HHHccCCCEEEEEEccCc
Confidence 999999999999764433
No 98
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.73 E-value=0.00019 Score=55.27 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=62.6
Q ss_pred eEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecc
Q 036911 53 KIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGI 132 (359)
Q Consensus 53 ~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v 132 (359)
+|+|+|||+|.++..+++ .+..+++..|+..+-....-+ . ..........++.
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~--------~-~~~~~~~~~~~~~-- 53 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARK--------A-AAALLADNVEVLK-- 53 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHH--------H-HhcccccceEEEE--
Confidence 589999999998877752 123788888875321110000 0 0011111222332
Q ss_pred cCCcccCCC-CCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 133 PGSFYGRLF-PNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 133 ~gsFy~~lf-p~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
+++..... +.+++|+++++..+++.+ .+...+++...+-|+|||.++++
T Consensus 54 -~~~~~~~~~~~~~~d~i~~~~~~~~~~----------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 54 -GDAEELPPEADESFDVIISDPPLHHLV----------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -cChhhhccccCCceEEEEEccceeehh----------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 44544443 668899999999999861 12335788888889999999876
No 99
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.69 E-value=0.00016 Score=69.48 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=60.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~ 127 (359)
..+|+|+|||+|..++.+. +. .+ .+++..|+... .....+. ..+.. ..+
T Consensus 160 g~~VLDvGcGsG~lai~aa--------~~-------g~-~~V~avDid~~-----------al~~a~~n~~~n~~~-~~~ 211 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAAL--------KL-------GA-AKVVGIDIDPL-----------AVESARKNAELNQVS-DRL 211 (288)
T ss_pred CCEEEEeCCChhHHHHHHH--------Hc-------CC-CeEEEEECCHH-----------HHHHHHHHHHHcCCC-cce
Confidence 4799999999998876553 11 12 47888887421 1111111 11111 111
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
... .++ ...++++++|+++++...+++ ..++..-.+-|+|||++
T Consensus 212 ~~~--~~~--~~~~~~~~fDlVvan~~~~~l--------------------------------~~ll~~~~~~LkpgG~l 255 (288)
T TIGR00406 212 QVK--LIY--LEQPIEGKADVIVANILAEVI--------------------------------KELYPQFSRLVKPGGWL 255 (288)
T ss_pred EEE--ecc--cccccCCCceEEEEecCHHHH--------------------------------HHHHHHHHHHcCCCcEE
Confidence 111 112 123456799999998655443 13666778899999999
Q ss_pred EEEEecCCC
Q 036911 208 LLSIIGNDR 216 (359)
Q Consensus 208 ~~~~~g~~~ 216 (359)
+++.+....
T Consensus 256 i~sgi~~~~ 264 (288)
T TIGR00406 256 ILSGILETQ 264 (288)
T ss_pred EEEeCcHhH
Confidence 998876544
No 100
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.67 E-value=0.00024 Score=71.56 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=69.8
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh-CCCCCCeEE
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK-GSNFGPCFI 129 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~-~~~~~~~f~ 129 (359)
..+|+|+|||+|..++.+... .|..+++..|+.. ...+..++.. ....+-.|
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~---------------~p~a~VtAVDiS~-----------~ALe~AreNa~~~g~rV~f- 304 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALE---------------RPDAFVRASDISP-----------PALETARKNAADLGARVEF- 304 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHh---------------CCCCEEEEEECCH-----------HHHHHHHHHHHHcCCcEEE-
Confidence 359999999999999877622 2557899999842 1111121111 11112223
Q ss_pred ecccCCcccCCCC-CCceeEEEecccccccccCCCCccccCCCCCC-----CcceeecCCCCccccHHHHHHHHHHhhcc
Q 036911 130 AGIPGSFYGRLFP-NKSLHFVHSSYSLHWLSQVPEGLVSESGVPLN-----KGHICMAKTSPVGRDFTLFLTSRSEEILS 203 (359)
Q Consensus 130 ~~v~gsFy~~lfp-~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n-----~g~i~~~~~~~~~~d~~~fL~~Ra~EL~p 203 (359)
+.+++.+..+| .+++|+++|+ |+-+......... +..+...+.......++.+++.-.+-|+|
T Consensus 305 --i~gDl~e~~l~~~~~FDLIVSN---------PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp 373 (423)
T PRK14966 305 --AHGSWFDTDMPSEGKWDIIVSN---------PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE 373 (423)
T ss_pred --EEcchhccccccCCCccEEEEC---------CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC
Confidence 34677665444 4689999995 4333221100000 11112222233355677888888889999
Q ss_pred CceEEEEE
Q 036911 204 GGHVLLSI 211 (359)
Q Consensus 204 GG~l~~~~ 211 (359)
||.+++..
T Consensus 374 gG~lilEi 381 (423)
T PRK14966 374 GGFLLLEH 381 (423)
T ss_pred CcEEEEEE
Confidence 99987655
No 101
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.67 E-value=0.00016 Score=65.22 Aligned_cols=106 Identities=19% Similarity=0.374 Sum_probs=70.4
Q ss_pred cCCcccCC--CCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 133 PGSFYGRL--FPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 133 ~gsFy~~l--fp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
.++..+-| ||++|||.|+-+-+||=+.+ |..+. .+-|+-|...+++
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~-P~~vL-------------------------------~EmlRVgr~~IVs 108 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTLQAVRR-PDEVL-------------------------------EEMLRVGRRAIVS 108 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHHHhHhH-HHHHH-------------------------------HHHHHhcCeEEEE
Confidence 34554333 89999999999999999877 54332 4457889999988
Q ss_pred EecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhh---ccCCcC-ccCCCHHHHHHHHhcCCceEEeEEEEEeecC
Q 036911 211 IIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKV---DWFNLP-YYAPSPEEVRHVIQTEGSFNIRRFDIHTVDW 284 (359)
Q Consensus 211 ~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~---d~f~~P-~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~ 284 (359)
++.-. .|. .-..+.-.|.....+. .-++-| +.+.|..++++..++.| ++|.+-..+...+
T Consensus 109 FPNFg---------~W~----~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 109 FPNFG---------HWR----NRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLDGGR 172 (193)
T ss_pred ecChH---------HHH----HHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEcCCC
Confidence 85322 333 2234444566555532 122323 23579999999999998 8998887776544
No 102
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.63 E-value=0.00023 Score=64.51 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=59.9
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~ 126 (359)
...+|+|+|||+|..++.++... .+..+|+..|+-. ...+..++ ..+....-
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~--------------~~~~~v~avD~~~-----------~~~~~a~~n~~~~g~~~~v 94 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLV--------------GETGKVYAVDKDE-----------KAINLTRRNAEKFGVLNNI 94 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHh--------------CCCCEEEEEECCH-----------HHHHHHHHHHHHhCCCCCe
Confidence 35799999999999988776322 2347888889741 11121211 12211111
Q ss_pred eEEecccCCcccCCC-CCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 127 CFIAGIPGSFYGRLF-PNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 127 ~f~~~v~gsFy~~lf-p~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
.++ .+++.+.+. .++++|.+++.... .+...+|+.-.+-|+|||
T Consensus 95 ~~~---~~d~~~~l~~~~~~~D~V~~~~~~--------------------------------~~~~~~l~~~~~~LkpgG 139 (198)
T PRK00377 95 VLI---KGEAPEILFTINEKFDRIFIGGGS--------------------------------EKLKEIISASWEIIKKGG 139 (198)
T ss_pred EEE---EechhhhHhhcCCCCCEEEECCCc--------------------------------ccHHHHHHHHHHHcCCCc
Confidence 232 345543222 23678998884321 123347888788999999
Q ss_pred eEEEEE
Q 036911 206 HVLLSI 211 (359)
Q Consensus 206 ~l~~~~ 211 (359)
++++..
T Consensus 140 ~lv~~~ 145 (198)
T PRK00377 140 RIVIDA 145 (198)
T ss_pred EEEEEe
Confidence 998755
No 103
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.62 E-value=0.0001 Score=74.98 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=46.7
Q ss_pred cCCCCCCceeEEEeccccc-ccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 138 GRLFPNKSLHFVHSSYSLH-WLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 138 ~~lfp~~S~d~~~S~~alh-Wls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
..+||+++||++||+-|+- |.+.- | + +|----+-|+|||+++++..-..+
T Consensus 174 rLPfp~~~fDmvHcsrc~i~W~~~~--------------g-~--------------~l~evdRvLRpGGyfv~S~ppv~~ 224 (506)
T PF03141_consen 174 RLPFPSNAFDMVHCSRCLIPWHPND--------------G-F--------------LLFEVDRVLRPGGYFVLSGPPVYQ 224 (506)
T ss_pred cccCCccchhhhhcccccccchhcc--------------c-c--------------eeehhhhhhccCceEEecCCcccc
Confidence 7889999999999999875 75542 1 1 233447889999999999875442
Q ss_pred CCCCCchhHHHHHHHHHHHHHH
Q 036911 217 KPGDPRCTGWELLGVTLNDMVL 238 (359)
Q Consensus 217 ~~~~~~~~~~~~l~~al~~mv~ 238 (359)
...+.....|+.+++....|--
T Consensus 225 r~~~~~~~~~~~~~~l~~~lCW 246 (506)
T PF03141_consen 225 RTDEDLEEEWNAMEDLAKSLCW 246 (506)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 1011114566666555444443
No 104
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.62 E-value=0.00028 Score=66.66 Aligned_cols=126 Identities=19% Similarity=0.260 Sum_probs=68.1
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh--CCCCCCe
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK--GSNFGPC 127 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~--~~~~~~~ 127 (359)
...+|+|+|||+|..++.++... |..+++..|.... .....+... ....+..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~---------------~~~~v~~iDis~~-----------~l~~a~~n~~~~~~~~i~ 161 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER---------------PDAEVTAVDISPE-----------ALAVARRNAKHGLGARVE 161 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC---------------CCCEEEEEECCHH-----------HHHHHHHHHHhCCCCcEE
Confidence 35799999999999888776332 4578999997421 111111111 1111122
Q ss_pred EEecccCCcccCCCCCCceeEEEeccccc---ccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccC
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLH---WLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSG 204 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alh---Wls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pG 204 (359)
++ .+++... ++++++|+++|+--.. -+..++..+.+ .+-.....+.......+..|++.-.+-|+||
T Consensus 162 ~~---~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~------~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~g 231 (275)
T PRK09328 162 FL---QGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRD------HEPHLALFGGEDGLDFYRRIIEQAPRYLKPG 231 (275)
T ss_pred EE---EccccCc-CCCCceeEEEECCCcCCcchhhhCCchhhh------cCCchhhcCCCCHHHHHHHHHHHHHHhcccC
Confidence 32 2455432 3468999999952100 00000110100 0001111112223677888999888999999
Q ss_pred ceEEEEE
Q 036911 205 GHVLLSI 211 (359)
Q Consensus 205 G~l~~~~ 211 (359)
|++++..
T Consensus 232 G~l~~e~ 238 (275)
T PRK09328 232 GWLLLEI 238 (275)
T ss_pred CEEEEEE
Confidence 9999855
No 105
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.57 E-value=0.0002 Score=67.27 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=68.3
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeE
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCF 128 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f 128 (359)
+...+|+|+|||+|..++.+.+.. +..++...++-.-......+++ +.+++..+-.+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~---------------~~a~I~~VEiq~~~a~~A~~nv--------~ln~l~~ri~v 99 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRT---------------EKAKIVGVEIQEEAAEMAQRNV--------ALNPLEERIQV 99 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccC---------------CCCcEEEEEeCHHHHHHHHHHH--------HhCcchhceeE
Confidence 347899999999999999888432 2256655555321111111111 11122111122
Q ss_pred EecccCCcc--cCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 129 IAGIPGSFY--GRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 129 ~~~v~gsFy--~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
+-+|+- ....+..++|+|+| -|+-...... .|+...+-...-...-++..+++.-++-|||||.
T Consensus 100 ---~~~Di~~~~~~~~~~~fD~Ii~---------NPPyf~~~~~--~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~ 165 (248)
T COG4123 100 ---IEADIKEFLKALVFASFDLIIC---------NPPYFKQGSR--LNENPLRAIARHEITLDLEDLIRAAAKLLKPGGR 165 (248)
T ss_pred ---ehhhHHHhhhcccccccCEEEe---------CCCCCCCccc--cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCE
Confidence 224442 34445568999999 3543332111 1111111000001167788999999999999999
Q ss_pred EEEEE
Q 036911 207 VLLSI 211 (359)
Q Consensus 207 l~~~~ 211 (359)
+.++.
T Consensus 166 l~~V~ 170 (248)
T COG4123 166 LAFVH 170 (248)
T ss_pred EEEEe
Confidence 98877
No 106
>PLN03075 nicotianamine synthase; Provisional
Probab=97.52 E-value=0.0013 Score=63.44 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=65.5
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
.+-+|||+|||.|+.|..++.. +. .|.-+++--|.-. +-+.+.+.+ .....+...+-.|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa------~~-------~p~~~~~giD~d~-~ai~~Ar~~------~~~~~gL~~rV~F~ 182 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAK------HH-------LPTTSFHNFDIDP-SANDVARRL------VSSDPDLSKRMFFH 182 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHH------hc-------CCCCEEEEEeCCH-HHHHHHHHH------hhhccCccCCcEEE
Confidence 5789999999999887766522 11 2556788778741 111111110 10111222234566
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
.+ +-.+..-+.+.+|+||+. ++|-+.+.+. ...|+.-++-|+|||.+++
T Consensus 183 ~~---Da~~~~~~l~~FDlVF~~-ALi~~dk~~k---------------------------~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 183 TA---DVMDVTESLKEYDVVFLA-ALVGMDKEEK---------------------------VKVIEHLGKHMAPGALLML 231 (296)
T ss_pred EC---chhhcccccCCcCEEEEe-cccccccccH---------------------------HHHHHHHHHhcCCCcEEEE
Confidence 54 322221124789999999 6665443111 2367788999999999988
Q ss_pred EE
Q 036911 210 SI 211 (359)
Q Consensus 210 ~~ 211 (359)
-+
T Consensus 232 r~ 233 (296)
T PLN03075 232 RS 233 (296)
T ss_pred ec
Confidence 87
No 107
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.52 E-value=0.00029 Score=73.01 Aligned_cols=128 Identities=20% Similarity=0.247 Sum_probs=69.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~ 127 (359)
..+|+|+|||+|..++.++... |..+++..|+.. ......+. ..+.. ..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~---------------p~~~v~avDis~-----------~al~~A~~N~~~~~l~-~~- 190 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL---------------PNANVIATDISL-----------DAIEVAKSNAIKYEVT-DR- 190 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC---------------CCCeEEEEECCH-----------HHHHHHHHHHHHcCCc-cc-
Confidence 4689999999999998776332 458899999842 11111111 11211 11
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
+..+.+++... ++++++|+++|+--....+..+....+ ... .+-.+...+.......++.+++.-.+-|+|||++
T Consensus 191 -v~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~--v~~-~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l 265 (506)
T PRK01544 191 -IQIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIE--TIN-YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKI 265 (506)
T ss_pred -eeeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCch--hhc-cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEE
Confidence 12234676543 356789999996322222111110000 000 0000111112222566788898888999999999
Q ss_pred EEEE
Q 036911 208 LLSI 211 (359)
Q Consensus 208 ~~~~ 211 (359)
++.+
T Consensus 266 ~lEi 269 (506)
T PRK01544 266 ILEI 269 (506)
T ss_pred EEEE
Confidence 8864
No 108
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.50 E-value=0.0016 Score=63.75 Aligned_cols=188 Identities=18% Similarity=0.229 Sum_probs=113.2
Q ss_pred ccCCCCcchHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCC
Q 036911 9 MNGGRGDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAP 88 (359)
Q Consensus 9 M~gG~g~~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p 88 (359)
|-||-+..+|.-+-.+|+.+. .+..++.+.+.+.+.. .......+|.|-|.|+.+-.+++. | |
T Consensus 138 ~l~~~~~~~~~~~~~~~~sm~-~l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~--------f-------p 200 (342)
T KOG3178|consen 138 MLGGYGGADERFSKDFNGSMS-FLSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSK--------Y-------P 200 (342)
T ss_pred hhhhhcccccccHHHHHHHHH-HHHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHh--------C-------C
Confidence 567777777765555664443 2233333333222221 334679999999999988887742 2 5
Q ss_pred cceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCcccc
Q 036911 89 MYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSE 168 (359)
Q Consensus 89 ~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~ 168 (359)
.+..+==|||. ......... ++ |.-+.|++++- .|++- ++|.-+.||=+.
T Consensus 201 ~ik~infdlp~-------------v~~~a~~~~--~g---V~~v~gdmfq~-~P~~d--aI~mkWiLhdwt--------- 250 (342)
T KOG3178|consen 201 HIKGINFDLPF-------------VLAAAPYLA--PG---VEHVAGDMFQD-TPKGD--AIWMKWILHDWT--------- 250 (342)
T ss_pred CCceeecCHHH-------------HHhhhhhhc--CC---cceeccccccc-CCCcC--eEEEEeecccCC---------
Confidence 67777667752 100110010 01 33356888988 77776 899888887322
Q ss_pred CCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCC-CCCCCc----hhHHHHHHHHHHHHHHhccch
Q 036911 169 SGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDR-KPGDPR----CTGWELLGVTLNDMVLEGLVE 243 (359)
Q Consensus 169 ~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~-~~~~~~----~~~~~~l~~al~~mv~eGli~ 243 (359)
.+|+..||+..++-|+|||.+++.-.-.++ ...+.. ....+++..+..+ -|
T Consensus 251 ------------------DedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~---~G--- 306 (342)
T KOG3178|consen 251 ------------------DEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTS---GG--- 306 (342)
T ss_pred ------------------hHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhc---cc---
Confidence 268889999999999999999998774332 101110 1222322222211 24
Q ss_pred hhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEE
Q 036911 244 EAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDI 279 (359)
Q Consensus 244 ~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~ 279 (359)
-.++.+|++..+.++| |.+-..-.
T Consensus 307 -----------kert~~e~q~l~~~~g-F~~~~~~~ 330 (342)
T KOG3178|consen 307 -----------KERTLKEFQALLPEEG-FPVCMVAL 330 (342)
T ss_pred -----------eeccHHHHHhcchhhc-CceeEEEe
Confidence 3467899999999999 88765544
No 109
>PRK14968 putative methyltransferase; Provisional
Probab=97.46 E-value=0.0016 Score=57.47 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=65.2
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCC-CeEE
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFG-PCFI 129 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~-~~f~ 129 (359)
..+|+|+|||+|..+..+... ..+++..|...+ .-.. ....+. ..+...+ ..+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~-----------------~~~v~~~D~s~~-~~~~------a~~~~~-~~~~~~~~~~~- 77 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN-----------------GKKVVGVDINPY-AVEC------AKCNAK-LNNIRNNGVEV- 77 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh-----------------cceEEEEECCHH-HHHH------HHHHHH-HcCCCCcceEE-
Confidence 468999999999987777621 156777786421 1000 001111 1111111 222
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
+.+++... ++++++|+++++..+.+-. |..... ..++ ...............|++.-.+-|+|||.+++
T Consensus 78 --~~~d~~~~-~~~~~~d~vi~n~p~~~~~--~~~~~~---~~~~---~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 78 --IRSDLFEP-FRGDKFDVILFNPPYLPTE--EEEEWD---DWLN---YALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred --Eecccccc-ccccCceEEEECCCcCCCC--chhhhh---hhhh---hhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 23566554 4556999999875543311 110000 0000 00000111133466789998999999999988
Q ss_pred EEe
Q 036911 210 SII 212 (359)
Q Consensus 210 ~~~ 212 (359)
...
T Consensus 147 ~~~ 149 (188)
T PRK14968 147 LQS 149 (188)
T ss_pred EEc
Confidence 763
No 110
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.40 E-value=0.00061 Score=64.02 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=62.3
Q ss_pred CCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCe
Q 036911 48 LPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPC 127 (359)
Q Consensus 48 ~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~ 127 (359)
.|+.+.|+|+|||.+..+.. + + -.|+--||..- + ..+
T Consensus 178 r~~~~vIaD~GCGEakiA~~----------~---------~-~kV~SfDL~a~--------------------~---~~V 214 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIASS----------E---------R-HKVHSFDLVAV--------------------N---ERV 214 (325)
T ss_pred CcCceEEEecccchhhhhhc----------c---------c-cceeeeeeecC--------------------C---Cce
Confidence 36789999999999875441 0 1 34444466420 0 122
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
++.++-+.++++.|+|+++.+.+|+= .||..|++--.+.|+|||.+
T Consensus 215 ----~~cDm~~vPl~d~svDvaV~CLSLMg------------------------------tn~~df~kEa~RiLk~gG~l 260 (325)
T KOG3045|consen 215 ----IACDMRNVPLEDESVDVAVFCLSLMG------------------------------TNLADFIKEANRILKPGGLL 260 (325)
T ss_pred ----eeccccCCcCccCcccEEEeeHhhhc------------------------------ccHHHHHHHHHHHhccCceE
Confidence 23466678889999999998777653 35667999999999999999
Q ss_pred EEEEe
Q 036911 208 LLSII 212 (359)
Q Consensus 208 ~~~~~ 212 (359)
.+.-.
T Consensus 261 ~IAEv 265 (325)
T KOG3045|consen 261 YIAEV 265 (325)
T ss_pred EEEeh
Confidence 88764
No 111
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.40 E-value=0.00083 Score=54.77 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=64.2
Q ss_pred ceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCeE
Q 036911 52 LKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPCF 128 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~f 128 (359)
.+|+|+|||+|..++.+++. - ..+++..|+- .+ .....+. ..+...+..+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~---------------~-~~~~~gvdi~--~~---------~~~~a~~~~~~~~~~~~~~~ 54 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRR---------------G-AARVTGVDID--PE---------AVELARRNLPRNGLDDRVEV 54 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHH---------------C-TCEEEEEESS--HH---------HHHHHHHHCHHCTTTTTEEE
T ss_pred CEEEEcCcchHHHHHHHHHH---------------C-CCeEEEEEEC--HH---------HHHHHHHHHHHccCCceEEE
Confidence 58999999999987776622 1 3788888873 11 1111111 1122112334
Q ss_pred EecccCCcccCC--CCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 129 IAGIPGSFYGRL--FPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 129 ~~~v~gsFy~~l--fp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
+. +++.... ++++++|+++++-=.+.....+ ....++...|++.-.+-|+|||.
T Consensus 55 ~~---~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~---------------------~~~~~~~~~~~~~~~~~L~~gG~ 110 (117)
T PF13659_consen 55 IV---GDARDLPEPLPDGKFDLIVTNPPYGPRSGDK---------------------AALRRLYSRFLEAAARLLKPGGV 110 (117)
T ss_dssp EE---SHHHHHHHTCTTT-EEEEEE--STTSBTT-------------------------GGCHHHHHHHHHHHHEEEEEE
T ss_pred EE---CchhhchhhccCceeEEEEECCCCccccccc---------------------hhhHHHHHHHHHHHHHHcCCCeE
Confidence 33 4555443 7889999999942221110000 01134677899999999999999
Q ss_pred EEEEEe
Q 036911 207 VLLSII 212 (359)
Q Consensus 207 l~~~~~ 212 (359)
+++.+.
T Consensus 111 ~~~~~~ 116 (117)
T PF13659_consen 111 LVFITP 116 (117)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 999874
No 112
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.36 E-value=0.0017 Score=60.51 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccch
Q 036911 33 KPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGF 112 (359)
Q Consensus 33 ~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~ 112 (359)
-|.|.+.+..+. .+...||++.|||.|.+..-|+ ++ -.+|+..|+...=-...|+.....
T Consensus 29 np~L~~~~~~l~---~~~~~rvLvPgCGkg~D~~~LA--------~~---------G~~V~GvDlS~~Ai~~~~~e~~~~ 88 (226)
T PRK13256 29 NEFLVKHFSKLN---INDSSVCLIPMCGCSIDMLFFL--------SK---------GVKVIGIELSEKAVLSFFSQNTIN 88 (226)
T ss_pred CHHHHHHHHhcC---CCCCCeEEEeCCCChHHHHHHH--------hC---------CCcEEEEecCHHHHHHHHHHcCCC
Confidence 345555444332 1235799999999999999887 22 377888888743222222211100
Q ss_pred HHHHHHh-hCCCCCCeEEecccCCcccCCCC---CCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccc
Q 036911 113 YEKLKEV-KGSNFGPCFIAGIPGSFYGRLFP---NKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGR 188 (359)
Q Consensus 113 ~~~~~~~-~~~~~~~~f~~~v~gsFy~~lfp---~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~ 188 (359)
.. +... ........-+.-+.|+|++.-.+ .+.+|+|+=..+|+=| |+..
T Consensus 89 ~~-~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al---pp~~----------------------- 141 (226)
T PRK13256 89 YE-VIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL---PNDL----------------------- 141 (226)
T ss_pred cc-eecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC---CHHH-----------------------
Confidence 00 0000 00000001122234788875432 2579999988888874 4422
Q ss_pred cHHHHHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhc
Q 036911 189 DFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQT 268 (359)
Q Consensus 189 d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~ 268 (359)
..++.+.-++-|+|||.+++.++-.+. . -.-|-+.-+.+|+++.+..
T Consensus 142 -R~~Y~~~l~~lL~pgg~llll~~~~~~--~------------------------------~~GPPf~v~~~e~~~lf~~ 188 (226)
T PRK13256 142 -RTNYAKMMLEVCSNNTQILLLVMEHDK--K------------------------------SQTPPYSVTQAELIKNFSA 188 (226)
T ss_pred -HHHHHHHHHHHhCCCcEEEEEEEecCC--C------------------------------CCCCCCcCCHHHHHHhccC
Confidence 235777878889999999999974332 0 0235566778999999865
Q ss_pred CCceEEeEEEE
Q 036911 269 EGSFNIRRFDI 279 (359)
Q Consensus 269 ~Gsf~i~~~e~ 279 (359)
. |+|+.++.
T Consensus 189 ~--~~i~~l~~ 197 (226)
T PRK13256 189 K--IKFELIDS 197 (226)
T ss_pred C--ceEEEeee
Confidence 5 78877764
No 113
>PRK00811 spermidine synthase; Provisional
Probab=97.33 E-value=0.001 Score=63.93 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=64.8
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhh-C--CCCC
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVK-G--SNFG 125 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~-~--~~~~ 125 (359)
+++.+|+|+|||+|..+..++ ++ ++..+|...|+-. ..-.+.+. .+.... + ..++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l--------~~-------~~~~~V~~VEid~-~vv~~a~~------~~~~~~~~~~~d~r 132 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVL--------KH-------PSVEKITLVEIDE-RVVEVCRK------YLPEIAGGAYDDPR 132 (283)
T ss_pred CCCCEEEEEecCchHHHHHHH--------cC-------CCCCEEEEEeCCH-HHHHHHHH------HhHHhccccccCCc
Confidence 567899999999999877665 21 1225777778742 11111111 011000 1 1112
Q ss_pred CeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 126 PCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 126 ~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
--++.+.+..|-.. +++++|+|++-.+-+|. .+..+. -..|++..++-|+|||
T Consensus 133 v~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~~--~~~~l~-----------------------t~ef~~~~~~~L~~gG 185 (283)
T PRK00811 133 VELVIGDGIKFVAE--TENSFDVIIVDSTDPVG--PAEGLF-----------------------TKEFYENCKRALKEDG 185 (283)
T ss_pred eEEEECchHHHHhh--CCCcccEEEECCCCCCC--chhhhh-----------------------HHHHHHHHHHhcCCCc
Confidence 23444444333333 56899999997665551 111111 1358888899999999
Q ss_pred eEEEEE
Q 036911 206 HVLLSI 211 (359)
Q Consensus 206 ~l~~~~ 211 (359)
.+++..
T Consensus 186 vlv~~~ 191 (283)
T PRK00811 186 IFVAQS 191 (283)
T ss_pred EEEEeC
Confidence 998753
No 114
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.25 E-value=0.0023 Score=60.37 Aligned_cols=123 Identities=13% Similarity=0.172 Sum_probs=65.5
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..++.+.+.. |..+++..|+.. ......+...... ...|+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~---------------~~~~v~~vDis~-----------~al~~A~~N~~~~-~~~~~~ 139 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL---------------DGIELHAADIDP-----------AAVRCARRNLADA-GGTVHE 139 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC---------------CCCEEEEEECCH-----------HHHHHHHHHHHHc-CCEEEE
Confidence 4689999999999998887332 346888889731 1111111111000 112333
Q ss_pred cccCCcccCCC--CCCceeEEEecccccccccCCCCccccCCCCCC------CcceeecCCCCccccHHHHHHHHHHhhc
Q 036911 131 GIPGSFYGRLF--PNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLN------KGHICMAKTSPVGRDFTLFLTSRSEEIL 202 (359)
Q Consensus 131 ~v~gsFy~~lf--p~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n------~g~i~~~~~~~~~~d~~~fL~~Ra~EL~ 202 (359)
+++.+.+. ..+++|+++++ |+-+........+ +-..-..+.....+-++.++..-.+-|+
T Consensus 140 ---~D~~~~l~~~~~~~fDlVv~N---------PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~ 207 (251)
T TIGR03704 140 ---GDLYDALPTALRGRVDILAAN---------APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA 207 (251)
T ss_pred ---eechhhcchhcCCCEeEEEEC---------CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 45544321 13579999994 4433211000000 0000011111224446788888889999
Q ss_pred cCceEEEEEe
Q 036911 203 SGGHVLLSII 212 (359)
Q Consensus 203 pGG~l~~~~~ 212 (359)
|||++++...
T Consensus 208 ~gG~l~l~~~ 217 (251)
T TIGR03704 208 PGGHLLVETS 217 (251)
T ss_pred CCCEEEEEEC
Confidence 9999998763
No 115
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0017 Score=62.43 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=65.6
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|||+|||-|..++.+. +. .|+.++.+.|. |+..+ ...+..+.. ++. ....+.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la--------~~-------~p~~~vtmvDv---n~~Av----~~ar~Nl~~-N~~--~~~~v~ 213 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLA--------KK-------SPQAKLTLVDV---NARAV----ESARKNLAA-NGV--ENTEVW 213 (300)
T ss_pred CCcEEEeCCCccHHHHHHH--------Hh-------CCCCeEEEEec---CHHHH----HHHHHhHHH-cCC--CccEEE
Confidence 3499999999999999887 32 36899999996 33222 111111211 111 121111
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
..+-|..+.. ++|+|+|| |+-... .-.. +.--..++..=++-|++||.|.++
T Consensus 214 --~s~~~~~v~~--kfd~IisN---------PPfh~G---------~~v~------~~~~~~~i~~A~~~L~~gGeL~iV 265 (300)
T COG2813 214 --ASNLYEPVEG--KFDLIISN---------PPFHAG---------KAVV------HSLAQEIIAAAARHLKPGGELWIV 265 (300)
T ss_pred --Eecccccccc--cccEEEeC---------CCccCC---------cchh------HHHHHHHHHHHHHhhccCCEEEEE
Confidence 1355555555 99999994 442221 1000 000114666668999999999998
Q ss_pred EecCCC
Q 036911 211 IIGNDR 216 (359)
Q Consensus 211 ~~g~~~ 216 (359)
.-|-.+
T Consensus 266 an~~l~ 271 (300)
T COG2813 266 ANRHLP 271 (300)
T ss_pred EcCCCC
Confidence 864433
No 116
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.18 E-value=0.0025 Score=62.40 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=65.1
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|.|||||..++... . ....++..|+-. ..+ ......++ ..+. .. +.
T Consensus 183 g~~vLDp~cGtG~~lieaa--------~---------~~~~v~g~Di~~---~~~----~~a~~nl~-~~g~--~~--i~ 233 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAG--------L---------MGAKVIGCDIDW---KMV----AGARINLE-HYGI--ED--FF 233 (329)
T ss_pred cCEEEECCCCCCHHHHHHH--------H---------hCCeEEEEcCCH---HHH----HHHHHHHH-HhCC--CC--Ce
Confidence 4689999999997654322 1 126788888731 111 00011111 1222 12 11
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
.+.+++.+..++++++|+++++- |-...... ++ .....-...+|+.-++-|+|||++++.
T Consensus 234 ~~~~D~~~l~~~~~~~D~Iv~dP--------Pyg~~~~~-----~~-------~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 234 VKRGDATKLPLSSESVDAIATDP--------PYGRSTTA-----AG-------DGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred EEecchhcCCcccCCCCEEEECC--------CCcCcccc-----cC-------CchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 23467777667788999999932 21111000 00 000122467888889999999999998
Q ss_pred EecCCC
Q 036911 211 IIGNDR 216 (359)
Q Consensus 211 ~~g~~~ 216 (359)
+....+
T Consensus 294 ~~~~~~ 299 (329)
T TIGR01177 294 VPTRID 299 (329)
T ss_pred EcCCCC
Confidence 865543
No 117
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.14 E-value=0.0024 Score=64.73 Aligned_cols=122 Identities=16% Similarity=0.056 Sum_probs=70.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh---hCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV---KGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~---~~~~~~~~ 127 (359)
..+|+|+|||+|.-|..+++.+ +..+++.+|...+ ....++.. .|. . +
T Consensus 239 g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~-----------~l~~~~~n~~r~g~--~-~ 289 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEH-----------RLKRVYENLKRLGL--T-I 289 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHH-----------HHHHHHHHHHHcCC--C-e
Confidence 4799999999999999877332 2368999997421 11112111 121 1 2
Q ss_pred EEecccCCcccCCC--CCCceeEEEe---cccccccccCCCCccccCCCCCCCcceeecCCCCc-----cccHHHHHHHH
Q 036911 128 FIAGIPGSFYGRLF--PNKSLHFVHS---SYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPV-----GRDFTLFLTSR 197 (359)
Q Consensus 128 f~~~v~gsFy~~lf--p~~S~d~~~S---~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~-----~~d~~~fL~~R 197 (359)
-+..+.++.....+ +.+++|.|++ +++.--+.+.|..... .++. .+.-..+|..-
T Consensus 290 ~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~---------------~~~~~~~~l~~lQ~~lL~~a 354 (426)
T TIGR00563 290 KAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWL---------------RKPRDIAELAELQSEILDAI 354 (426)
T ss_pred EEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhc---------------CCHHHHHHHHHHHHHHHHHH
Confidence 22223344433222 5678999986 3444444444432110 0111 12235678887
Q ss_pred HHhhccCceEEEEEecCCC
Q 036911 198 SEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 198 a~EL~pGG~l~~~~~g~~~ 216 (359)
++-|+|||+|+.++..-..
T Consensus 355 ~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 355 WPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred HHhcCCCcEEEEEeCCCCh
Confidence 8889999999999876643
No 118
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0032 Score=60.79 Aligned_cols=102 Identities=18% Similarity=0.265 Sum_probs=59.9
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
+..+|+|+|||||-.++..+ +. | + ..++..|+- =.++= .-++.. ..++.. + .+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~--------kL----G---A-~~v~g~DiD---p~AV~----aa~eNa-~~N~v~--~-~~ 214 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA--------KL----G---A-KKVVGVDID---PQAVE----AARENA-RLNGVE--L-LV 214 (300)
T ss_pred CCCEEEEecCChhHHHHHHH--------Hc----C---C-ceEEEecCC---HHHHH----HHHHHH-HHcCCc--h-hh
Confidence 57899999999999988765 21 1 2 667878862 11110 000100 011211 1 11
Q ss_pred ecccCCcccCCCCCC-ceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 130 AGIPGSFYGRLFPNK-SLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~-S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
--..|+..-.+.+ .+|+|++|- |-++ +..+..--.+.|+|||+++
T Consensus 215 --~~~~~~~~~~~~~~~~DvIVANI----LA~v----------------------------l~~La~~~~~~lkpgg~lI 260 (300)
T COG2264 215 --QAKGFLLLEVPENGPFDVIVANI----LAEV----------------------------LVELAPDIKRLLKPGGRLI 260 (300)
T ss_pred --hcccccchhhcccCcccEEEehh----hHHH----------------------------HHHHHHHHHHHcCCCceEE
Confidence 1135566667775 999999965 2221 1124556688899999999
Q ss_pred EEEe
Q 036911 209 LSII 212 (359)
Q Consensus 209 ~~~~ 212 (359)
++-.
T Consensus 261 lSGI 264 (300)
T COG2264 261 LSGI 264 (300)
T ss_pred EEee
Confidence 9874
No 119
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0016 Score=62.62 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=71.0
Q ss_pred eEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCeEE
Q 036911 53 KIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPCFI 129 (359)
Q Consensus 53 ~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~f~ 129 (359)
+|+|+|||||..++.++... |...|+..|+.. .-....+. ..+. .+..++
T Consensus 113 ~ilDlGTGSG~iai~la~~~---------------~~~~V~a~Dis~-----------~Al~~A~~Na~~~~l-~~~~~~ 165 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---------------PDAEVIAVDISP-----------DALALARENAERNGL-VRVLVV 165 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---------------cCCeEEEEECCH-----------HHHHHHHHHHHHcCC-ccEEEE
Confidence 89999999999999887332 558999999852 11111111 1221 111222
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcc------eeecCCCCccccHHHHHHHHHHhhcc
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGH------ICMAKTSPVGRDFTLFLTSRSEEILS 203 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~------i~~~~~~~~~~d~~~fL~~Ra~EL~p 203 (359)
. ++.+..+-. .+|+++| -|+-+..+ ......+- ....+........++|+..-.+-|+|
T Consensus 166 ~---~dlf~~~~~--~fDlIVs---------NPPYip~~-~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~ 230 (280)
T COG2890 166 Q---SDLFEPLRG--KFDLIVS---------NPPYIPAE-DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP 230 (280)
T ss_pred e---eecccccCC--ceeEEEe---------CCCCCCCc-ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC
Confidence 2 266555544 8999999 57777664 11111110 00111112366788999999999999
Q ss_pred CceEEEEE
Q 036911 204 GGHVLLSI 211 (359)
Q Consensus 204 GG~l~~~~ 211 (359)
||.+++..
T Consensus 231 ~g~l~le~ 238 (280)
T COG2890 231 GGVLILEI 238 (280)
T ss_pred CcEEEEEE
Confidence 99988876
No 120
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.07 E-value=0.0029 Score=64.34 Aligned_cols=124 Identities=13% Similarity=0.050 Sum_probs=72.1
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCC-eEE
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGP-CFI 129 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~-~f~ 129 (359)
..+|+|+|||+|..|..+++.. .+..+|+.+|+..+ -+ ....+.++ ..|. .+ .++
T Consensus 238 g~~VLD~cagpGgkt~~la~~~--------------~~~g~V~a~Dis~~---rl----~~~~~n~~-r~g~--~~v~~~ 293 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELM--------------KDQGKILAVDISRE---KI----QLVEKHAK-RLKL--SSIEIK 293 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEECCHH---HH----HHHHHHHH-HcCC--CeEEEE
Confidence 4689999999999999887332 23478999998421 11 01111111 1122 12 233
Q ss_pred ecccCCcccCC-CCCCceeEEEe---cccccccccCCCCccccCCCCCCCcceeecCCCCc-----cccHHHHHHHHHHh
Q 036911 130 AGIPGSFYGRL-FPNKSLHFVHS---SYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPV-----GRDFTLFLTSRSEE 200 (359)
Q Consensus 130 ~~v~gsFy~~l-fp~~S~d~~~S---~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~-----~~d~~~fL~~Ra~E 200 (359)
. ++..... +.++++|.|+. ++.+..+.+.|..... .+++ .+.-..+|..-++-
T Consensus 294 ~---~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~~~~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 294 I---ADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKEDFKKLSEIQLRIVSQAWKL 355 (431)
T ss_pred E---CchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHh---------------CCHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3432211 34678999986 3455555555532211 0111 23446678888999
Q ss_pred hccCceEEEEEecCCC
Q 036911 201 ILSGGHVLLSIIGNDR 216 (359)
Q Consensus 201 L~pGG~l~~~~~g~~~ 216 (359)
|+|||.|+.++.....
T Consensus 356 LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 356 LEKGGILLYSTCTVTK 371 (431)
T ss_pred cCCCCEEEEEECCCCh
Confidence 9999999999977654
No 121
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.06 E-value=0.0019 Score=59.79 Aligned_cols=87 Identities=14% Similarity=0.219 Sum_probs=59.9
Q ss_pred CCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCCCCCC
Q 036911 141 FPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGD 220 (359)
Q Consensus 141 fp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~ 220 (359)
.-+..+|+|.+.-.|.+|-.+- .++-.-+.-|+|||.+.|+.=.-+. ..
T Consensus 184 ~~~er~DLi~AaDVl~YlG~Le-----------------------------~~~~~aa~~L~~gGlfaFSvE~l~~--~~ 232 (287)
T COG4976 184 LTQERFDLIVAADVLPYLGALE-----------------------------GLFAGAAGLLAPGGLFAFSVETLPD--DG 232 (287)
T ss_pred ccCCcccchhhhhHHHhhcchh-----------------------------hHHHHHHHhcCCCceEEEEecccCC--CC
Confidence 3457789999887777765543 3666779999999999999843333 10
Q ss_pred CchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEEEeecC
Q 036911 221 PRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDIHTVDW 284 (359)
Q Consensus 221 ~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~~~~~~ 284 (359)
.. .+-+ .--|..+..=+++.++..| |+|..++...+.-
T Consensus 233 ~f------------------~l~p-------s~RyAH~~~YVr~~l~~~G-l~~i~~~~ttiR~ 270 (287)
T COG4976 233 GF------------------VLGP-------SQRYAHSESYVRALLAASG-LEVIAIEDTTIRR 270 (287)
T ss_pred Ce------------------ecch-------hhhhccchHHHHHHHHhcC-ceEEEeecccchh
Confidence 00 0111 1126778888999999999 9999998766543
No 122
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.04 E-value=0.0092 Score=56.72 Aligned_cols=129 Identities=17% Similarity=0.178 Sum_probs=76.7
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh----hCCCCCC
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV----KGSNFGP 126 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~----~~~~~~~ 126 (359)
...|+|+|||||..|+.++..+ |+..+...|+..- .-++..+ .+. .+.
T Consensus 149 ~~~ildlgtGSGaIslsll~~L---------------~~~~v~AiD~S~~------------Ai~La~eN~qr~~l-~g~ 200 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGL---------------PQCTVTAIDVSKA------------AIKLAKENAQRLKL-SGR 200 (328)
T ss_pred cceEEEecCCccHHHHHHHhcC---------------CCceEEEEeccHH------------HHHHHHHHHHHHhh-cCc
Confidence 4589999999999999988544 4577777787521 1111111 000 011
Q ss_pred eEEec--ccCCcccCC-CCCCceeEEEecccccccccCCCCccccCCCCCCC-ccee-----ecCCCCccccHHHHHHHH
Q 036911 127 CFIAG--IPGSFYGRL-FPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNK-GHIC-----MAKTSPVGRDFTLFLTSR 197 (359)
Q Consensus 127 ~f~~~--v~gsFy~~l-fp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~-g~i~-----~~~~~~~~~d~~~fL~~R 197 (359)
+-+.- .-++-|... .+.+.+|+++| .|+-+.+........ -..| ..+......-+..|+..-
T Consensus 201 i~v~~~~me~d~~~~~~l~~~~~dllvs---------NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a 271 (328)
T KOG2904|consen 201 IEVIHNIMESDASDEHPLLEGKIDLLVS---------NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLA 271 (328)
T ss_pred eEEEecccccccccccccccCceeEEec---------CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhh
Confidence 22110 123444333 78899999999 577666543211111 0111 222222356677788888
Q ss_pred HHhhccCceEEEEEecCCC
Q 036911 198 SEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 198 a~EL~pGG~l~~~~~g~~~ 216 (359)
.+-|+|||.+.|.+.+++.
T Consensus 272 ~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 272 TRMLQPGGFEQLELVERKE 290 (328)
T ss_pred HhhcccCCeEEEEeccccc
Confidence 9999999999999998865
No 123
>PRK04457 spermidine synthase; Provisional
Probab=97.01 E-value=0.0028 Score=60.19 Aligned_cols=115 Identities=11% Similarity=0.101 Sum_probs=65.4
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhC---CCCC
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKG---SNFG 125 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~---~~~~ 125 (359)
+.+.+|+|+|||+|..+..+. +. .|..+++..|+- |...+..++..+ ...+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~--------~~-------~p~~~v~~VEid-----------p~vi~~A~~~f~~~~~~~r 118 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIY--------TY-------LPDTRQTAVEIN-----------PQVIAVARNHFELPENGER 118 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHH--------Hh-------CCCCeEEEEECC-----------HHHHHHHHHHcCCCCCCCc
Confidence 456799999999999877665 22 255778888873 122221222111 1112
Q ss_pred CeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 126 PCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 126 ~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
--++.+-...|..+ .++++|+|+... .+-- ..|..+. -..|++.-.+-|+|||
T Consensus 119 v~v~~~Da~~~l~~--~~~~yD~I~~D~-~~~~-~~~~~l~-----------------------t~efl~~~~~~L~pgG 171 (262)
T PRK04457 119 FEVIEADGAEYIAV--HRHSTDVILVDG-FDGE-GIIDALC-----------------------TQPFFDDCRNALSSDG 171 (262)
T ss_pred eEEEECCHHHHHHh--CCCCCCEEEEeC-CCCC-CCccccC-----------------------cHHHHHHHHHhcCCCc
Confidence 22333333333332 236799998742 2211 1222111 1358988899999999
Q ss_pred eEEEEEecCCC
Q 036911 206 HVLLSIIGNDR 216 (359)
Q Consensus 206 ~l~~~~~g~~~ 216 (359)
++++...+++.
T Consensus 172 vlvin~~~~~~ 182 (262)
T PRK04457 172 IFVVNLWSRDK 182 (262)
T ss_pred EEEEEcCCCch
Confidence 99998776544
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.94 E-value=0.0041 Score=63.19 Aligned_cols=118 Identities=16% Similarity=0.134 Sum_probs=65.1
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh---hCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV---KGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~---~~~~~~~~ 127 (359)
..+|+|+|||+|..|..+++.. +...|+..|+.. .....++.. .|. ...
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~s~-----------~~l~~~~~n~~~~g~--~~~ 296 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA---------------PQAQVVALDIDA-----------QRLERVRENLQRLGL--KAT 296 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc---------------CCCEEEEEeCCH-----------HHHHHHHHHHHHcCC--CeE
Confidence 5699999999999998777332 226788888742 111112111 121 122
Q ss_pred EEecccCCcccC--CCCCCceeEEEecc---cccccccCCCCccccCCCCCCCcceeecCCCCc-----cccHHHHHHHH
Q 036911 128 FIAGIPGSFYGR--LFPNKSLHFVHSSY---SLHWLSQVPEGLVSESGVPLNKGHICMAKTSPV-----GRDFTLFLTSR 197 (359)
Q Consensus 128 f~~~v~gsFy~~--lfp~~S~d~~~S~~---alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~-----~~d~~~fL~~R 197 (359)
++. ++.... .++++++|.|++.. ..--+.+-|.... . .++. ......+|..-
T Consensus 297 ~~~---~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~-------~--------~~~~~l~~l~~~q~~iL~~a 358 (427)
T PRK10901 297 VIV---GDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKW-------L--------RRPEDIAALAALQSEILDAL 358 (427)
T ss_pred EEE---cCcccchhhcccCCCCEEEECCCCCcccccccCccccc-------c--------CCHHHHHHHHHHHHHHHHHH
Confidence 333 454332 24567899999521 1111112222100 0 0010 12335688888
Q ss_pred HHhhccCceEEEEEecC
Q 036911 198 SEEILSGGHVLLSIIGN 214 (359)
Q Consensus 198 a~EL~pGG~l~~~~~g~ 214 (359)
.+-|+|||+|+.++..-
T Consensus 359 ~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 359 WPLLKPGGTLLYATCSI 375 (427)
T ss_pred HHhcCCCCEEEEEeCCC
Confidence 89999999999888543
No 125
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.90 E-value=0.0011 Score=65.04 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=37.6
Q ss_pred CCCCC--ceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecC
Q 036911 140 LFPNK--SLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGN 214 (359)
Q Consensus 140 lfp~~--S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~ 214 (359)
.+++. .+|+|=+-+|||..=.- .+-.+.||+.-++-|+|||+++.+++..
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fes-------------------------e~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFES-------------------------EEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSS-------------------------HHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred hccccCCCcceeehHHHHHHhcCC-------------------------HHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 44544 99999999999995442 2345679999999999999999999743
No 126
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=96.90 E-value=0.0092 Score=57.73 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=56.1
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||||-+++..+ +. | . -+|+..|. |=.++-... +.. ..++.. ..+.+.
T Consensus 162 g~~vLDvG~GSGILaiaA~--------kl----G---A-~~v~a~Di---Dp~Av~~a~----~N~-~~N~~~-~~~~v~ 216 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAA--------KL----G---A-KKVVAIDI---DPLAVEAAR----ENA-ELNGVE-DRIEVS 216 (295)
T ss_dssp TSEEEEES-TTSHHHHHHH--------HT----T---B-SEEEEEES---SCHHHHHHH----HHH-HHTT-T-TCEEES
T ss_pred CCEEEEeCCcHHHHHHHHH--------Hc----C---C-CeEEEecC---CHHHHHHHH----HHH-HHcCCC-eeEEEE
Confidence 4699999999999888665 21 2 2 46888885 322221111 000 112322 234332
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
... -.+...+|++++|--.+=|-. ......+-|+|||+|+++
T Consensus 217 -~~~-----~~~~~~~dlvvANI~~~vL~~--------------------------------l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 217 -LSE-----DLVEGKFDLVVANILADVLLE--------------------------------LAPDIASLLKPGGYLILS 258 (295)
T ss_dssp -CTS-----CTCCS-EEEEEEES-HHHHHH--------------------------------HHHHCHHHEEEEEEEEEE
T ss_pred -Eec-----ccccccCCEEEECCCHHHHHH--------------------------------HHHHHHHhhCCCCEEEEc
Confidence 222 234589999999754443322 444557789999999998
Q ss_pred EecC
Q 036911 211 IIGN 214 (359)
Q Consensus 211 ~~g~ 214 (359)
-+-.
T Consensus 259 GIl~ 262 (295)
T PF06325_consen 259 GILE 262 (295)
T ss_dssp EEEG
T ss_pred cccH
Confidence 7543
No 127
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=96.89 E-value=0.0022 Score=58.29 Aligned_cols=114 Identities=20% Similarity=0.373 Sum_probs=66.9
Q ss_pred ceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCe-EEe
Q 036911 52 LKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPC-FIA 130 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~-f~~ 130 (359)
..++|+|||.|...+.++ .. .|+..++.-|.-.+ .+.+.+ .+... .+ ..++ ++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A--------~~-------~Pd~n~iGiE~~~~---~v~~a~----~~~~~-~~--l~Nv~~~~ 73 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELA--------KR-------NPDINFIGIEIRKK---RVAKAL----RKAEK-RG--LKNVRFLR 73 (195)
T ss_dssp EEEEEET-TTSHHHHHHH--------HH-------STTSEEEEEES-HH---HHHHHH----HHHHH-HT--TSSEEEEE
T ss_pred CeEEEecCCCCHHHHHHH--------HH-------CCCCCEEEEecchH---HHHHHH----HHHHh-hc--ccceEEEE
Confidence 399999999999888776 22 37799998887422 221111 11111 11 2344 444
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
+-...+...+++++|+|-++-++-=-|-.+-- .|.++.- ..||..-++-|+|||.+.+.
T Consensus 74 ~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH-----------~krRl~~----------~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 74 GDARELLRRLFPPGSVDRIYINFPDPWPKKRH-----------HKRRLVN----------PEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp S-CTTHHHHHSTTTSEEEEEEES-----SGGG-----------GGGSTTS----------HHHHHHHHHHEEEEEEEEEE
T ss_pred ccHHHHHhhcccCCchheEEEeCCCCCcccch-----------hhhhcCC----------chHHHHHHHHcCCCCEEEEE
Confidence 44555667889999999999877666622210 0111110 24999999999999999776
Q ss_pred E
Q 036911 211 I 211 (359)
Q Consensus 211 ~ 211 (359)
+
T Consensus 133 T 133 (195)
T PF02390_consen 133 T 133 (195)
T ss_dssp E
T ss_pred e
Confidence 6
No 128
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.82 E-value=0.047 Score=50.50 Aligned_cols=164 Identities=21% Similarity=0.267 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccc
Q 036911 32 AKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPG 111 (359)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~ 111 (359)
..|.|.+.+.++. .+...+|++-|||.|.....|+ ++ -.+|+..|+...=-...|+...
T Consensus 22 ~~p~L~~~~~~l~---~~~~~rvLvPgCG~g~D~~~La--------~~---------G~~VvGvDls~~Ai~~~~~e~~- 80 (218)
T PF05724_consen 22 PNPALVEYLDSLA---LKPGGRVLVPGCGKGYDMLWLA--------EQ---------GHDVVGVDLSPTAIEQAFEENN- 80 (218)
T ss_dssp STHHHHHHHHHHT---TSTSEEEEETTTTTSCHHHHHH--------HT---------TEEEEEEES-HHHHHHHHHHCT-
T ss_pred CCHHHHHHHHhcC---CCCCCeEEEeCCCChHHHHHHH--------HC---------CCeEEEEecCHHHHHHHHHHhc-
Confidence 4566666665532 2345799999999999988776 22 2788888886321111111000
Q ss_pred hHHHHHHhhCCCCCCe------EEecccCCcccCCCCC-CceeEEEecccccccccCCCCccccCCCCCCCcceeecCCC
Q 036911 112 FYEKLKEVKGSNFGPC------FIAGIPGSFYGRLFPN-KSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTS 184 (359)
Q Consensus 112 ~~~~~~~~~~~~~~~~------f~~~v~gsFy~~lfp~-~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~ 184 (359)
+. ......... .+.-+.|||++.-... +++|+|+=..+|+=| |+..
T Consensus 81 ----~~-~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al---pp~~------------------- 133 (218)
T PF05724_consen 81 ----LE-PTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL---PPEM------------------- 133 (218)
T ss_dssp ----TE-EECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS----GGG-------------------
T ss_pred ----cC-CCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC---CHHH-------------------
Confidence 00 000000111 1223457998733222 369999998888764 4322
Q ss_pred CccccHHHHHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHH
Q 036911 185 PVGRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRH 264 (359)
Q Consensus 185 ~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~ 264 (359)
...+-+.-++-|+|||++++.++-.+. . ...-|-|.-+.+|+++
T Consensus 134 -----R~~Ya~~l~~ll~p~g~~lLi~l~~~~--~-----------------------------~~~GPPf~v~~~ev~~ 177 (218)
T PF05724_consen 134 -----RERYAQQLASLLKPGGRGLLITLEYPQ--G-----------------------------EMEGPPFSVTEEEVRE 177 (218)
T ss_dssp -----HHHHHHHHHHCEEEEEEEEEEEEES-C--S-----------------------------CSSSSS----HHHHHH
T ss_pred -----HHHHHHHHHHHhCCCCcEEEEEEEcCC--c-----------------------------CCCCcCCCCCHHHHHH
Confidence 235777779999999996555553332 1 0123667778999999
Q ss_pred HHhcCCceEEeEEEEEe
Q 036911 265 VIQTEGSFNIRRFDIHT 281 (359)
Q Consensus 265 ~i~~~Gsf~i~~~e~~~ 281 (359)
.+. .+ |+|+.++..+
T Consensus 178 l~~-~~-f~i~~l~~~~ 192 (218)
T PF05724_consen 178 LFG-PG-FEIEELEEED 192 (218)
T ss_dssp HHT-TT-EEEEEEEEEE
T ss_pred Hhc-CC-cEEEEEeccc
Confidence 998 44 9999999855
No 129
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.81 E-value=0.0049 Score=60.37 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=44.4
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~ 127 (359)
..+|+|+|||+|.+|..+.+.+ ...-+|+.-|... ......+. ..+.. +-.
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~--------------~~~g~VvgVDis~-----------~~l~~Ar~~l~~~g~~-nV~ 134 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVV--------------GEKGLVVSVEYSR-----------KICEIAKRNVRRLGIE-NVI 134 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhc--------------CCCCEEEEEECCH-----------HHHHHHHHHHHHcCCC-cEE
Confidence 5799999999999998886322 1113566667531 11111111 11221 223
Q ss_pred EEecccCCcccCCCCCCceeEEEeccccc
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLH 156 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alh 156 (359)
++ .|+....+.+.+++|++++..+++
T Consensus 135 ~i---~gD~~~~~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 135 FV---CGDGYYGVPEFAPYDVIFVTVGVD 160 (322)
T ss_pred EE---eCChhhcccccCCccEEEECCchH
Confidence 33 356665555557899999976654
No 130
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.031 Score=50.17 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccc
Q 036911 32 AKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPG 111 (359)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~ 111 (359)
+++.|+....++.. ..+.-++|+|||||--|-.|++.+ .|....+..|+ | |.
T Consensus 28 LlDaLekd~~eL~~---~~~~i~lEIG~GSGvvstfL~~~i--------------~~~~~~latDi--N---------p~ 79 (209)
T KOG3191|consen 28 LLDALEKDAAELKG---HNPEICLEIGCGSGVVSTFLASVI--------------GPQALYLATDI--N---------PE 79 (209)
T ss_pred HHHHHHHHHHHHhh---cCceeEEEecCCcchHHHHHHHhc--------------CCCceEEEecC--C---------HH
Confidence 66777777766643 236789999999999888887665 14577888887 2 11
Q ss_pred hHHH-HHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCc-ceeecCCCCcccc
Q 036911 112 FYEK-LKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKG-HICMAKTSPVGRD 189 (359)
Q Consensus 112 ~~~~-~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g-~i~~~~~~~~~~d 189 (359)
-.+. +....- +.+-+-.|..|+..-+-+ +++|+.+= -|+-+.....+-..++ ..-..+....+.-
T Consensus 80 A~~~Tl~TA~~---n~~~~~~V~tdl~~~l~~-~~VDvLvf---------NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v 146 (209)
T KOG3191|consen 80 ALEATLETARC---NRVHIDVVRTDLLSGLRN-ESVDVLVF---------NPPYVPTSDEEIGDEGIASAWAGGKDGREV 146 (209)
T ss_pred HHHHHHHHHHh---cCCccceeehhHHhhhcc-CCccEEEE---------CCCcCcCCcccchhHHHHHHHhcCcchHHH
Confidence 1111 111110 112233455677666666 88998765 3554443221110000 0001111222444
Q ss_pred HHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 190 FTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 190 ~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
..+||..--.-|.|-|.+++...-++.
T Consensus 147 ~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 147 TDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred HHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 567777777778888888887765443
No 131
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.79 E-value=0.013 Score=52.89 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHhhccCceEEEEEec
Q 036911 189 DFTLFLTSRSEEILSGGHVLLSIIG 213 (359)
Q Consensus 189 d~~~fL~~Ra~EL~pGG~l~~~~~g 213 (359)
++..+|+.-.+-|+|||++++....
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeec
Confidence 4566888888899999999998753
No 132
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.79 E-value=0.0052 Score=63.82 Aligned_cols=139 Identities=15% Similarity=0.105 Sum_probs=85.8
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchh
Q 036911 24 IQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFN 103 (359)
Q Consensus 24 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn 103 (359)
.|++.++...|.+.-...++. ..+...++|+|||.|..+..++ +. .|+..++.-|.-.+
T Consensus 324 ~q~~~~e~~~p~~~i~~eklf---~~~~p~~lEIG~G~G~~~~~~A--------~~-------~p~~~~iGiE~~~~--- 382 (506)
T PRK01544 324 VQQNLLDNELPKYLFSKEKLV---NEKRKVFLEIGFGMGEHFINQA--------KM-------NPDALFIGVEVYLN--- 382 (506)
T ss_pred HHHHHHHhhhhhhCCCHHHhC---CCCCceEEEECCCchHHHHHHH--------Hh-------CCCCCEEEEEeeHH---
Confidence 788888887776654333322 1246799999999999888776 22 37788888887432
Q ss_pred hhhhcccchHHHHHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCC
Q 036911 104 TIFKSLPGFYEKLKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKT 183 (359)
Q Consensus 104 ~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~ 183 (359)
.+-+. ++........++.+......+....||++|+|-++-++.=-| |+.-- .|.++..
T Consensus 383 ~~~~~-------~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW----pKkrh-------~krRl~~--- 441 (506)
T PRK01544 383 GVANV-------LKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW----IKNKQ-------KKKRIFN--- 441 (506)
T ss_pred HHHHH-------HHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCC----CCCCC-------ccccccC---
Confidence 11111 111111122455544322233467789999999999887777 33110 1112211
Q ss_pred CCccccHHHHHHHHHHhhccCceEEEEE
Q 036911 184 SPVGRDFTLFLTSRSEEILSGGHVLLSI 211 (359)
Q Consensus 184 ~~~~~d~~~fL~~Ra~EL~pGG~l~~~~ 211 (359)
..||+.-++-|+|||.+.+.+
T Consensus 442 -------~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 442 -------KERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -------HHHHHHHHHhcCCCCEEEEEc
Confidence 248999999999999998765
No 133
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.79 E-value=0.0063 Score=62.14 Aligned_cols=120 Identities=15% Similarity=0.049 Sum_probs=67.5
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~ 127 (359)
..+|+|+|||+|..|..+.+.+ ....+|+..|+... ....+++ ..|. .+
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~--------------~~~~~V~avD~s~~-----------~l~~~~~~~~~~g~--~~- 302 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELM--------------QNRGQITAVDRYPQ-----------KLEKIRSHASALGI--TI- 302 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHh--------------CCCcEEEEEECCHH-----------HHHHHHHHHHHhCC--Ce-
Confidence 4699999999999998776433 12368999997531 2122221 1221 12
Q ss_pred EEecccCCcccCCCCCCceeEEEe----cccccccccCCCCccccCCCCCCCcceeecCCCCc-----cccHHHHHHHHH
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHS----SYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPV-----GRDFTLFLTSRS 198 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S----~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~-----~~d~~~fL~~Ra 198 (359)
+..+.++... +.+++++|.++. +.+-+|- +-|.... ..++. .+.-..+|..-+
T Consensus 303 -v~~~~~Da~~-~~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~---------------~~~~~~~~~l~~~q~~iL~~a~ 364 (445)
T PRK14904 303 -IETIEGDARS-FSPEEQPDAILLDAPCTGTGVLG-RRAELRW---------------KLTPEKLAELVGLQAELLDHAA 364 (445)
T ss_pred -EEEEeCcccc-cccCCCCCEEEEcCCCCCcchhh-cCcchhh---------------cCCHHHHHHHHHHHHHHHHHHH
Confidence 1222345432 346778999985 1111221 1121110 00111 123346888889
Q ss_pred HhhccCceEEEEEecCCC
Q 036911 199 EEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 199 ~EL~pGG~l~~~~~g~~~ 216 (359)
+-|+|||+|+.++..-..
T Consensus 365 ~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 365 SLLKPGGVLVYATCSIEP 382 (445)
T ss_pred HhcCCCcEEEEEeCCCCh
Confidence 999999999999876643
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.78 E-value=0.0064 Score=62.02 Aligned_cols=122 Identities=16% Similarity=0.056 Sum_probs=66.1
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..|+.+++.+ .+..+++..|+..+ . +......++ ..|. .+ +.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~--------------~~~~~v~avDi~~~---~----l~~~~~n~~-~~g~--~~--v~ 304 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL--------------KNTGKVVALDIHEH---K----LKLIEENAK-RLGL--TN--IE 304 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEeCCHH---H----HHHHHHHHH-HcCC--Ce--EE
Confidence 4689999999999999877432 13468999998421 1 011111111 1122 12 22
Q ss_pred cccCCcccCC--CCCCceeEEEec---ccccccccCCCCccccCCCCCCCcceeecCCCCc-----cccHHHHHHHHHHh
Q 036911 131 GIPGSFYGRL--FPNKSLHFVHSS---YSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPV-----GRDFTLFLTSRSEE 200 (359)
Q Consensus 131 ~v~gsFy~~l--fp~~S~d~~~S~---~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~-----~~d~~~fL~~Ra~E 200 (359)
.+.+++...+ ++ +++|+|++. +....+++.|.... .+ ++. .+--..+|+.-.+-
T Consensus 305 ~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~-------~~--------~~~~~~~l~~~q~~iL~~a~~~ 368 (444)
T PRK14902 305 TKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKY-------NK--------TKEDIESLQEIQLEILESVAQY 368 (444)
T ss_pred EEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhh-------cC--------CHHHHHHHHHHHHHHHHHHHHH
Confidence 2335554322 33 789999973 22333333332111 00 010 11124578888889
Q ss_pred hccCceEEEEEecC
Q 036911 201 ILSGGHVLLSIIGN 214 (359)
Q Consensus 201 L~pGG~l~~~~~g~ 214 (359)
|+|||+|+.++..-
T Consensus 369 LkpGG~lvystcs~ 382 (444)
T PRK14902 369 LKKGGILVYSTCTI 382 (444)
T ss_pred cCCCCEEEEEcCCC
Confidence 99999999776543
No 135
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.78 E-value=0.014 Score=57.06 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHH
Q 036911 35 ILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYE 114 (359)
Q Consensus 35 ~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~ 114 (359)
+|++...++... .+...+|+|+|||+|.-|..|++.+. +. ...+..+--|+... +..
T Consensus 62 iL~~~~~~Ia~~-i~~~~~lIELGsG~~~Kt~~LL~aL~----~~-------~~~~~Y~plDIS~~-----------~L~ 118 (319)
T TIGR03439 62 ILKKHSSDIAAS-IPSGSMLVELGSGNLRKVGILLEALE----RQ-------KKSVDYYALDVSRS-----------ELQ 118 (319)
T ss_pred HHHHHHHHHHHh-cCCCCEEEEECCCchHHHHHHHHHHH----hc-------CCCceEEEEECCHH-----------HHH
Confidence 444444444322 23456899999999999999987762 11 12378888898631 111
Q ss_pred HHHHhhC-CCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCc---cccH
Q 036911 115 KLKEVKG-SNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPV---GRDF 190 (359)
Q Consensus 115 ~~~~~~~-~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~---~~d~ 190 (359)
....... ...+.+-+.|+.|+|.. .++||.+ |.. .. ++.-++.-+.+-. ...-
T Consensus 119 ~a~~~L~~~~~p~l~v~~l~gdy~~---------------~l~~l~~-~~~-~~------~~r~~~flGSsiGNf~~~ea 175 (319)
T TIGR03439 119 RTLAELPLGNFSHVRCAGLLGTYDD---------------GLAWLKR-PEN-RS------RPTTILWLGSSIGNFSRPEA 175 (319)
T ss_pred HHHHhhhhccCCCeEEEEEEecHHH---------------HHhhccc-ccc-cC------CccEEEEeCccccCCCHHHH
Confidence 1111111 23355777778888853 3344432 100 00 1112333333322 5566
Q ss_pred HHHHHHHHH-hhccCceEEEEEecCCC
Q 036911 191 TLFLTSRSE-EILSGGHVLLSIIGNDR 216 (359)
Q Consensus 191 ~~fL~~Ra~-EL~pGG~l~~~~~g~~~ 216 (359)
..||+.-++ -|.|||.|++.+=+.++
T Consensus 176 ~~fL~~~~~~~l~~~d~lLiG~D~~k~ 202 (319)
T TIGR03439 176 AAFLAGFLATALSPSDSFLIGLDGCKD 202 (319)
T ss_pred HHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 679988888 89999999887644433
No 136
>PRK01581 speE spermidine synthase; Validated
Probab=96.70 E-value=0.011 Score=58.81 Aligned_cols=121 Identities=12% Similarity=0.142 Sum_probs=62.2
Q ss_pred CCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCe
Q 036911 48 LPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPC 127 (359)
Q Consensus 48 ~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~ 127 (359)
.+++.+|+++|||+|.....++ +. ++..++...|+-. ..-.+.+..+.+.. +....-..++--
T Consensus 148 h~~PkrVLIIGgGdG~tlrelL--------k~-------~~v~~It~VEIDp-eVIelAr~~~~L~~-~~~~~~~DpRV~ 210 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVL--------KY-------ETVLHVDLVDLDG-SMINMARNVPELVS-LNKSAFFDNRVN 210 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHH--------hc-------CCCCeEEEEeCCH-HHHHHHHhccccch-hccccCCCCceE
Confidence 3567899999999998554444 21 2346788888742 22222222111100 000000111222
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
.+.+.+..|-.. .++++|+|++-. |.+..... ...| =..|++...+-|+|||.|
T Consensus 211 vvi~Da~~fL~~--~~~~YDVIIvDl--------~DP~~~~~------~~Ly----------T~EFy~~~~~~LkPgGV~ 264 (374)
T PRK01581 211 VHVCDAKEFLSS--PSSLYDVIIIDF--------PDPATELL------STLY----------TSELFARIATFLTEDGAF 264 (374)
T ss_pred EEECcHHHHHHh--cCCCccEEEEcC--------CCccccch------hhhh----------HHHHHHHHHHhcCCCcEE
Confidence 333333333322 356899999862 22111000 0111 134888889999999999
Q ss_pred EEEE
Q 036911 208 LLSI 211 (359)
Q Consensus 208 ~~~~ 211 (359)
++..
T Consensus 265 V~Qs 268 (374)
T PRK01581 265 VCQS 268 (374)
T ss_pred EEec
Confidence 8873
No 137
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.67 E-value=0.0088 Score=53.84 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhhcC--CCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccc
Q 036911 34 PILQDSIKKLYCNR--LPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPG 111 (359)
Q Consensus 34 ~~l~~ai~~~~~~~--~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~ 111 (359)
|+-++.|+.+..+. .....+++|+|||||..|+..+ .+ .|.-++|.-|--. .
T Consensus 16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~--------------~p~~~v~AIe~~~-----------~ 69 (187)
T COG2242 16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LA--------------GPSGRVIAIERDE-----------E 69 (187)
T ss_pred CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-Hh--------------CCCceEEEEecCH-----------H
Confidence 34445555543322 1235699999999999998776 21 2567788777421 1
Q ss_pred hHHHHHH---hhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccc
Q 036911 112 FYEKLKE---VKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGR 188 (359)
Q Consensus 112 ~~~~~~~---~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~ 188 (359)
-.+..+. ..+ .+++-+. .|+..+-|-...++|.+| +.++ .
T Consensus 70 a~~~~~~N~~~fg--~~n~~vv--~g~Ap~~L~~~~~~daiF-----------------------------IGGg----~ 112 (187)
T COG2242 70 ALELIERNAARFG--VDNLEVV--EGDAPEALPDLPSPDAIF-----------------------------IGGG----G 112 (187)
T ss_pred HHHHHHHHHHHhC--CCcEEEE--eccchHhhcCCCCCCEEE-----------------------------ECCC----C
Confidence 1111111 112 1333332 355544443322444444 3333 2
Q ss_pred cHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 189 DFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 189 d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
.....|+.-.+-|+|||++|+...-..+
T Consensus 113 ~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 113 NIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred CHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 3445788888999999999998865444
No 138
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.65 E-value=0.0043 Score=59.05 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=59.5
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhC--CCCCC
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKG--SNFGP 126 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~--~~~~~ 126 (359)
+++.+|+|+|||+|..+..+++ . .+..++...|+..+ +.+....+ +....+ ...+-
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~--------~-------~~~~~v~~veid~~----vi~~a~~~---~~~~~~~~~~~~v 128 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLK--------H-------KSVEKATLVDIDEK----VIELSKKF---LPSLAGSYDDPRV 128 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHh--------C-------CCcceEEEEeCCHH----HHHHHHHH---hHhhcccccCCce
Confidence 4567999999999997765542 1 12256777777422 11111000 000001 01111
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
-++.+-+..|..+ .++++|+|++..+-++-. +..+. -..|++..++-|+|||.
T Consensus 129 ~i~~~D~~~~l~~--~~~~yDvIi~D~~~~~~~--~~~l~-----------------------~~ef~~~~~~~L~pgG~ 181 (270)
T TIGR00417 129 DLQIDDGFKFLAD--TENTFDVIIVDSTDPVGP--AETLF-----------------------TKEFYELLKKALNEDGI 181 (270)
T ss_pred EEEECchHHHHHh--CCCCccEEEEeCCCCCCc--ccchh-----------------------HHHHHHHHHHHhCCCcE
Confidence 2222222223222 257899999865543311 11110 13588888999999999
Q ss_pred EEEE
Q 036911 207 VLLS 210 (359)
Q Consensus 207 l~~~ 210 (359)
+++.
T Consensus 182 lv~~ 185 (270)
T TIGR00417 182 FVAQ 185 (270)
T ss_pred EEEc
Confidence 9987
No 139
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.62 E-value=0.0043 Score=57.08 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=54.2
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh---hCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV---KGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~---~~~~~~~~ 127 (359)
..+|+|+|||||++|..+..-+ .+...|+-.|.- +.+....++. .+.. +..
T Consensus 73 g~~VLeIGtGsGY~aAlla~lv--------------g~~g~Vv~vE~~-----------~~l~~~A~~~l~~~~~~-nv~ 126 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAHLV--------------GPVGRVVSVERD-----------PELAERARRNLARLGID-NVE 126 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--------------STTEEEEEEESB-----------HHHHHHHHHHHHHHTTH-SEE
T ss_pred CCEEEEecCCCcHHHHHHHHhc--------------CccceEEEECcc-----------HHHHHHHHHHHHHhccC-cee
Confidence 5799999999999999876322 123445544431 1222111111 1111 123
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
++. |+-+.-+-+...+|.|++..+. .++|.. + -+-|++||+|
T Consensus 127 ~~~---gdg~~g~~~~apfD~I~v~~a~---~~ip~~----------------------------l----~~qL~~gGrL 168 (209)
T PF01135_consen 127 VVV---GDGSEGWPEEAPFDRIIVTAAV---PEIPEA----------------------------L----LEQLKPGGRL 168 (209)
T ss_dssp EEE---S-GGGTTGGG-SEEEEEESSBB---SS--HH----------------------------H----HHTEEEEEEE
T ss_pred EEE---cchhhccccCCCcCEEEEeecc---chHHHH----------------------------H----HHhcCCCcEE
Confidence 444 3444444455689999999887 366752 2 3458999999
Q ss_pred EEEEec
Q 036911 208 LLSIIG 213 (359)
Q Consensus 208 ~~~~~g 213 (359)
++-+.-
T Consensus 169 V~pi~~ 174 (209)
T PF01135_consen 169 VAPIGQ 174 (209)
T ss_dssp EEEESS
T ss_pred EEEEcc
Confidence 987753
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=96.62 E-value=0.0092 Score=55.88 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=41.6
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..++.++..+ ...+..+|+.-|+-.+ .....+... ....++.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~------------~~~~~~~V~aVEID~~-----------Al~~Ar~n~---~~~~~~~ 103 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMM------------MYAKPREIVCVELNHT-----------YYKLGKRIV---PEATWIN 103 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhc------------ccCCCcEEEEEECCHH-----------HHHHHHhhc---cCCEEEE
Confidence 5799999999999888776332 0112468888887321 111111111 0122333
Q ss_pred cccCCcccCCCCCCceeEEEec
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSS 152 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~ 152 (359)
++|.... +++++|+|+||
T Consensus 104 ---~D~~~~~-~~~~FDlIIsN 121 (241)
T PHA03412 104 ---ADALTTE-FDTLFDMAISN 121 (241)
T ss_pred ---cchhccc-ccCCccEEEEC
Confidence 5775433 35799999993
No 141
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.60 E-value=0.02 Score=58.34 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=65.5
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~~~ 127 (359)
..+|+|+|||+|..|..+.+.+ .+...|+..|... .....++. ..|. .++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~--------------~~~g~v~a~D~~~-----------~rl~~~~~n~~r~g~--~~v 305 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELM--------------GDQGEIWAVDRSA-----------SRLKKLQENAQRLGL--KSI 305 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHh--------------CCCceEEEEcCCH-----------HHHHHHHHHHHHcCC--CeE
Confidence 4799999999999999887432 1336889889742 11111211 1222 221
Q ss_pred EEecccCCcccCC----CCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCc-----cccHHHHHHHHH
Q 036911 128 FIAGIPGSFYGRL----FPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPV-----GRDFTLFLTSRS 198 (359)
Q Consensus 128 f~~~v~gsFy~~l----fp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~-----~~d~~~fL~~Ra 198 (359)
..+.++..... ++++++|.|+. +.|+.-... ..-+...-| ..+++ .+.-..+|..-+
T Consensus 306 --~~~~~D~~~~~~~~~~~~~~fD~Vl~--------DaPCSg~G~--~~r~p~~~~--~~~~~~~~~l~~~Q~~iL~~a~ 371 (434)
T PRK14901 306 --KILAADSRNLLELKPQWRGYFDRILL--------DAPCSGLGT--LHRHPDARW--RQTPEKIQELAPLQAELLESLA 371 (434)
T ss_pred --EEEeCChhhcccccccccccCCEEEE--------eCCCCcccc--cccCcchhh--hCCHHHHHHHHHHHHHHHHHHH
Confidence 12234443222 34678999886 333311100 000000000 00111 122357788889
Q ss_pred HhhccCceEEEEEecC
Q 036911 199 EEILSGGHVLLSIIGN 214 (359)
Q Consensus 199 ~EL~pGG~l~~~~~g~ 214 (359)
+-|+|||+|+.++..-
T Consensus 372 ~~lkpgG~lvystcsi 387 (434)
T PRK14901 372 PLLKPGGTLVYATCTL 387 (434)
T ss_pred HhcCCCCEEEEEeCCC
Confidence 9999999999887544
No 142
>PLN02366 spermidine synthase
Probab=96.57 E-value=0.014 Score=56.74 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=61.9
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhc-ccchHHHHHHhhC-CCCCC
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKS-LPGFYEKLKEVKG-SNFGP 126 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~-l~~~~~~~~~~~~-~~~~~ 126 (359)
+++.+|+++|||+|.....++ +. ++..++...|+... --.+.+. ++. . ..+ .+++-
T Consensus 90 ~~pkrVLiIGgG~G~~~rell--------k~-------~~v~~V~~VEiD~~-Vi~~ar~~f~~----~--~~~~~dpRv 147 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIA--------RH-------SSVEQIDICEIDKM-VIDVSKKFFPD----L--AVGFDDPRV 147 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHH--------hC-------CCCCeEEEEECCHH-HHHHHHHhhhh----h--ccccCCCce
Confidence 568899999999998665554 21 12356777776421 1111111 010 0 001 11122
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
-++.+.+..|.+. .+++++|+|++-.+-+|-. +..+.. ..|++.-++-|+|||.
T Consensus 148 ~vi~~Da~~~l~~-~~~~~yDvIi~D~~dp~~~--~~~L~t-----------------------~ef~~~~~~~L~pgGv 201 (308)
T PLN02366 148 NLHIGDGVEFLKN-APEGTYDAIIVDSSDPVGP--AQELFE-----------------------KPFFESVARALRPGGV 201 (308)
T ss_pred EEEEChHHHHHhh-ccCCCCCEEEEcCCCCCCc--hhhhhH-----------------------HHHHHHHHHhcCCCcE
Confidence 3333333333332 2567899999855544411 111111 2488888999999999
Q ss_pred EEEEE
Q 036911 207 VLLSI 211 (359)
Q Consensus 207 l~~~~ 211 (359)
++...
T Consensus 202 lv~q~ 206 (308)
T PLN02366 202 VCTQA 206 (308)
T ss_pred EEECc
Confidence 97654
No 143
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.014 Score=53.60 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.6
Q ss_pred CcceEEeecCCCCcchHHHH
Q 036911 50 ECLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~ 69 (359)
...+|+|+|||||++|..+.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla 91 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLA 91 (209)
T ss_pred CCCeEEEECCCchHHHHHHH
Confidence 36899999999999998765
No 144
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.48 E-value=0.13 Score=49.42 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccc
Q 036911 32 AKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPG 111 (359)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~ 111 (359)
+..+|+++|..+... ..+.+|+|+-||+|+- +.+++.+. +..| .++.++|... -| +..
T Consensus 119 l~~~i~~ai~~L~~~--g~pvrIlDIAaG~GRY-------vlDal~~~-----~~~~-~~i~LrDys~--~N-----v~~ 176 (311)
T PF12147_consen 119 LEELIRQAIARLREQ--GRPVRILDIAAGHGRY-------VLDALEKH-----PERP-DSILLRDYSP--IN-----VEK 176 (311)
T ss_pred HHHHHHHHHHHHHhc--CCceEEEEeccCCcHH-------HHHHHHhC-----CCCC-ceEEEEeCCH--HH-----HHH
Confidence 566777777766432 4689999999999974 45555543 1124 6888888741 11 100
Q ss_pred hHHHHHHhhCCCCCCeEEecccCCc--ccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCcccc
Q 036911 112 FYEKLKEVKGSNFGPCFIAGIPGSF--YGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRD 189 (359)
Q Consensus 112 ~~~~~~~~~~~~~~~~f~~~v~gsF--y~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d 189 (359)
-..+-++.|...-.-|..+-..+. |..+-| ..++++.+=-.--+++ .+-
T Consensus 177 -g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p--~P~l~iVsGL~ElF~D--------------------------n~l 227 (311)
T PF12147_consen 177 -GRALIAERGLEDIARFEQGDAFDRDSLAALDP--APTLAIVSGLYELFPD--------------------------NDL 227 (311)
T ss_pred -HHHHHHHcCCccceEEEecCCCCHhHhhccCC--CCCEEEEecchhhCCc--------------------------HHH
Confidence 011222333321124555443333 233333 2233333221111111 111
Q ss_pred HHHHHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccC--CCHHHHHHHHh
Q 036911 190 FTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYA--PSPEEVRHVIQ 267 (359)
Q Consensus 190 ~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~--~s~~E~~~~i~ 267 (359)
.+.-|+--+..+.|||.|+.+.--. ....+.++.+|..-- + ..||.. +|..|+.++++
T Consensus 228 v~~sl~gl~~al~pgG~lIyTgQPw--------HPQle~IAr~LtsHr-~-----------g~~WvMRrRsq~EmD~Lv~ 287 (311)
T PF12147_consen 228 VRRSLAGLARALEPGGYLIYTGQPW--------HPQLEMIARVLTSHR-D-----------GKAWVMRRRSQAEMDQLVE 287 (311)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCC--------CcchHHHHHHHhccc-C-----------CCceEEEecCHHHHHHHHH
Confidence 3335667788999999998765211 223445555544321 1 235654 79999999999
Q ss_pred cCCceE
Q 036911 268 TEGSFN 273 (359)
Q Consensus 268 ~~Gsf~ 273 (359)
..| |+
T Consensus 288 ~aG-F~ 292 (311)
T PF12147_consen 288 AAG-FE 292 (311)
T ss_pred HcC-Cc
Confidence 999 76
No 145
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.46 E-value=0.0041 Score=59.31 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=83.6
Q ss_pred hHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecC
Q 036911 17 SYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLND 96 (359)
Q Consensus 17 sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nD 96 (359)
-|++.+..=........|+..+.+.. .+....++|.|||.|.-+. .. |...++-.|
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~-----~~~gsv~~d~gCGngky~~------------------~~-p~~~~ig~D 72 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDS-----QPTGSVGLDVGCGNGKYLG------------------VN-PLCLIIGCD 72 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhc-----cCCcceeeecccCCcccCc------------------CC-Ccceeeecc
Confidence 45555555333334456666666542 2446899999999996422 22 447777778
Q ss_pred CCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCc
Q 036911 97 LPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKG 176 (359)
Q Consensus 97 Lp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g 176 (359)
+..- ++. ..+..+. .... -++..+.++++.|+|...|.+.+||||.--.-
T Consensus 73 ~c~~-------l~~-----~ak~~~~--~~~~----~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR------------ 122 (293)
T KOG1331|consen 73 LCTG-------LLG-----GAKRSGG--DNVC----RADALKLPFREESFDAALSIAVIHHLSTRERR------------ 122 (293)
T ss_pred hhhh-------hcc-----ccccCCC--ceee----hhhhhcCCCCCCccccchhhhhhhhhhhHHHH------------
Confidence 7521 110 0011111 0111 13667899999999999999999999884321
Q ss_pred ceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 177 HICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 177 ~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
...|+.-.++|+|||.+.+..-+...
T Consensus 123 --------------~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 123 --------------ERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred --------------HHHHHHHHHHhcCCCceEEEEehhhc
Confidence 12566668899999999998888766
No 146
>PRK03612 spermidine synthase; Provisional
Probab=96.42 E-value=0.012 Score=61.47 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=79.3
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeE
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCF 128 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f 128 (359)
+++.+|+|+|||+|..+..++ ++ ++..++...|+-. +.-.+.+..+.+. .+....-.+++--+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll--------~~-------~~v~~v~~VEid~-~vi~~ar~~~~l~-~~~~~~~~dprv~v 358 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVL--------KY-------PDVEQVTLVDLDP-AMTELARTSPALR-ALNGGALDDPRVTV 358 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHH--------hC-------CCcCeEEEEECCH-HHHHHHHhCCcch-hhhccccCCCceEE
Confidence 457899999999998776655 21 1225777777631 1111111100000 00000001112233
Q ss_pred EecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 129 IAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
+.+.+..|-.. .++++|+|++...-+|-.. +. +.|. ..|++.-.+-|+|||.++
T Consensus 359 i~~Da~~~l~~--~~~~fDvIi~D~~~~~~~~-~~-------------~L~t----------~ef~~~~~~~L~pgG~lv 412 (521)
T PRK03612 359 VNDDAFNWLRK--LAEKFDVIIVDLPDPSNPA-LG-------------KLYS----------VEFYRLLKRRLAPDGLLV 412 (521)
T ss_pred EEChHHHHHHh--CCCCCCEEEEeCCCCCCcc-hh-------------ccch----------HHHHHHHHHhcCCCeEEE
Confidence 44333333222 3478999999754433111 00 1110 248888889999999998
Q ss_pred EEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHh
Q 036911 209 LSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQ 267 (359)
Q Consensus 209 ~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~ 267 (359)
+....+.- --+.+..+.+.|.+.|. .- ..-...+|.| .++--.+.
T Consensus 413 ~~~~~~~~--------~~~~~~~i~~~l~~~gf-~v-~~~~~~vps~----g~w~f~~a 457 (521)
T PRK03612 413 VQSTSPYF--------APKAFWSIEATLEAAGL-AT-TPYHVNVPSF----GEWGFVLA 457 (521)
T ss_pred EecCCccc--------chHHHHHHHHHHHHcCC-EE-EEEEeCCCCc----chhHHHee
Confidence 87532211 12334455556655665 11 1122345666 45555444
No 147
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.42 E-value=0.0035 Score=55.21 Aligned_cols=76 Identities=16% Similarity=0.067 Sum_probs=46.7
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..|..+++. ..+++.-|+.. .....+++..... .++-
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-----------------~~~v~~vE~~~-----------~~~~~~~~~~~~~-~~v~-- 62 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-----------------AARVTAIEIDP-----------RLAPRLREKFAAA-DNLT-- 62 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-----------------CCeEEEEECCH-----------HHHHHHHHHhccC-CCEE--
Confidence 468999999999999988732 14566677631 1112222211111 1222
Q ss_pred cccCCcccCCCCCCceeEEEecccccc
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHW 157 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhW 157 (359)
.+.+++.+..+++.++|.++|+.-.|+
T Consensus 63 ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 63 VIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred EEECchhcCCccccCCCEEEECCCccc
Confidence 235788877777777999999765554
No 148
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=96.24 E-value=0.1 Score=47.01 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.4
Q ss_pred cceEEeecCCCCcchHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~ 69 (359)
.-+|+|||||.|..-..|.
T Consensus 68 A~~VlDLGtGNG~~L~~L~ 86 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLA 86 (227)
T ss_pred ccceeeccCCchHHHHHHH
Confidence 3499999999998766665
No 149
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.19 E-value=0.015 Score=54.20 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=26.9
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLP 98 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 98 (359)
++.+|+|+|||+|.-++.++..+ ++..+++..|..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~--------------~~~g~v~tiD~d 102 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALAL--------------PEDGRITAIDID 102 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhC--------------CCCCEEEEEECC
Confidence 46799999999999888776332 235788888874
No 150
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=96.08 E-value=0.022 Score=53.10 Aligned_cols=114 Identities=17% Similarity=0.256 Sum_probs=69.6
Q ss_pred ceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe-
Q 036911 52 LKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA- 130 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~- 130 (359)
..++|||||.|.....++ ++ .|+.-++.-+.-.+ .....++........++.+.
T Consensus 50 pi~lEIGfG~G~~l~~~A--------~~-------nP~~nfiGiEi~~~----------~v~~~l~k~~~~~l~Nlri~~ 104 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMA--------KK-------NPEKNFLGIEIRVP----------GVAKALKKIKELGLKNLRLLC 104 (227)
T ss_pred cEEEEECCCCCHHHHHHH--------HH-------CCCCCEEEEEEehH----------HHHHHHHHHHHcCCCcEEEEc
Confidence 589999999998777665 22 47777777776432 11111111111111244443
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
+-.-.+...++|++|+|=++-++.=-| |+.- | +|.++.. ..||+.-++-|+|||.+.+.
T Consensus 105 ~DA~~~l~~~~~~~sl~~I~i~FPDPW----pKkR----H---~KRRl~~----------~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 105 GDAVEVLDYLIPDGSLDKIYINFPDPW----PKKR----H---HKRRLTQ----------PEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred CCHHHHHHhcCCCCCeeEEEEECCCCC----CCcc----c---cccccCC----------HHHHHHHHHHccCCCEEEEE
Confidence 223344577778889999999887777 3211 1 1222211 25999999999999999887
Q ss_pred E
Q 036911 211 I 211 (359)
Q Consensus 211 ~ 211 (359)
+
T Consensus 164 T 164 (227)
T COG0220 164 T 164 (227)
T ss_pred e
Confidence 6
No 151
>PLN02672 methionine S-methyltransferase
Probab=96.07 E-value=0.017 Score=64.71 Aligned_cols=131 Identities=11% Similarity=0.054 Sum_probs=72.5
Q ss_pred ceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCC---------
Q 036911 52 LKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGS--------- 122 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~--------- 122 (359)
.+|+|+|||+|..++.+.... |..+++..|+...= + .......+. ++.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~---------------~~~~v~avDis~~A---l----~~A~~Na~~-n~l~~~~~~~~~ 176 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW---------------LPSKVYGLDINPRA---V----KVAWINLYL-NALDDDGLPVYD 176 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC---------------CCCEEEEEECCHHH---H----HHHHHHHHH-cCcccccccccc
Confidence 589999999999999887332 34789999985210 0 000011111 000
Q ss_pred -----CCCCeEEecccCCcccCCCCC-CceeEEEecccccccccCCCCccccCCCCCCCc---------------ceeec
Q 036911 123 -----NFGPCFIAGIPGSFYGRLFPN-KSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKG---------------HICMA 181 (359)
Q Consensus 123 -----~~~~~f~~~v~gsFy~~lfp~-~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g---------------~i~~~ 181 (359)
...+ +.-+.++....+-.. ..+|+++| -|+-+....-....+. ..-..
T Consensus 177 ~~~~~l~~r--V~f~~sDl~~~~~~~~~~fDlIVS---------NPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~ 245 (1082)
T PLN02672 177 GEGKTLLDR--VEFYESDLLGYCRDNNIELDRIVG---------CIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQ 245 (1082)
T ss_pred ccccccccc--EEEEECchhhhccccCCceEEEEE---------CCCcCCCcchhhcChhhhhccccccccccCcccccc
Confidence 0011 223446776544221 26999999 4665553221111111 00011
Q ss_pred CC---CCccccHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 182 KT---SPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 182 ~~---~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
+. .....-.++++..-.+-|+|||+|++.+..+..
T Consensus 246 g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~ 283 (1082)
T PLN02672 246 GFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPG 283 (1082)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 11 122555678888888999999999998875543
No 152
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.97 E-value=0.02 Score=54.33 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 189 DFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 189 d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
.-..+|+.-++-|+|||+|+.++.....
T Consensus 177 ~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 177 LQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 3456888888899999999988765433
No 153
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.74 E-value=0.069 Score=49.26 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=100.8
Q ss_pred ceeeccCCCCcchHHHhhHHHHHHHHH-------hHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHH
Q 036911 5 QVLCMNGGRGDTSYANNSKIQKRAMLT-------AKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTID 77 (359)
Q Consensus 5 ~~l~M~gG~g~~sY~~ns~~Q~~~~~~-------~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~ 77 (359)
..+...|| -.+|-..|.. -+..++ +..+|.+...... ..+..++++|+||=+..|.....
T Consensus 4 ~ei~~~GG--l~~YQ~AS~~-Gq~~~RGGdSSK~lv~wL~~~~~~~~--~~~~~lrlLEVGals~~N~~s~~-------- 70 (219)
T PF11968_consen 4 AEIEALGG--LEAYQRASKQ-GQSKDRGGDSSKWLVEWLKELGVRPK--NGRPKLRLLEVGALSTDNACSTS-------- 70 (219)
T ss_pred HHHHHccC--HHHHHHHHHh-cCCCCCCCchhHHHHHHhhhhccccc--cccccceEEeecccCCCCccccc--------
Confidence 34455665 6777665554 222222 3444444322111 11236999999999888865321
Q ss_pred HHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecccCCcccCCCC---CCceeEEEeccc
Q 036911 78 GTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGIPGSFYGRLFP---NKSLHFVHSSYS 154 (359)
Q Consensus 78 ~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~gsFy~~lfp---~~S~d~~~S~~a 154 (359)
+-+.|.--||-+. .| .+. --||.+++.| .+++|+|.+|..
T Consensus 71 ----------~~fdvt~IDLns~--------~~---------------~I~----qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 71 ----------GWFDVTRIDLNSQ--------HP---------------GIL----QQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred ----------CceeeEEeecCCC--------CC---------------Cce----eeccccCCCCCCcccceeEEEEEEE
Confidence 3477888898432 01 111 1388889886 678999999999
Q ss_pred ccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce-----EEEEEecCCCCCCCCchhHHHHH
Q 036911 155 LHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH-----VLLSIIGNDRKPGDPRCTGWELL 229 (359)
Q Consensus 155 lhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~-----l~~~~~g~~~~~~~~~~~~~~~l 229 (359)
|..+.+ +.. +|. -|+.-.+-|+|+|. |+++++-+.- .
T Consensus 114 LNfVP~---p~~--------RG~---------------Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv--~---------- 155 (219)
T PF11968_consen 114 LNFVPD---PKQ--------RGE---------------MLRRAHKFLKPPGLSLFPSLFLVLPLPCV--T---------- 155 (219)
T ss_pred EeeCCC---HHH--------HHH---------------HHHHHHHHhCCCCccCcceEEEEeCchHh--h----------
Confidence 998444 221 232 46666888999999 8888864422 0
Q ss_pred HHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEE
Q 036911 230 GVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDI 279 (359)
Q Consensus 230 ~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~ 279 (359)
| .-|-+.+-++++++.-| |...+-+.
T Consensus 156 ---------------------N--SRy~~~~~l~~im~~LG-f~~~~~~~ 181 (219)
T PF11968_consen 156 ---------------------N--SRYMTEERLREIMESLG-FTRVKYKK 181 (219)
T ss_pred ---------------------c--ccccCHHHHHHHHHhCC-cEEEEEEe
Confidence 0 03445677888888888 88777654
No 154
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=95.58 E-value=0.022 Score=55.82 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=66.9
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
.-+|+|.|||||..|+-.++. | + ..|+.-| ++.+. .+..++...++.. .-+.
T Consensus 61 dK~VlDVGcGtGILS~F~akA------------G---A-~~V~aVe-----~S~ia----~~a~~iv~~N~~~---~ii~ 112 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKA------------G---A-RKVYAVE-----ASSIA----DFARKIVKDNGLE---DVIT 112 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHh------------C---c-ceEEEEe-----chHHH----HHHHHHHHhcCcc---ceEE
Confidence 569999999999988866522 1 1 4444444 22222 2222232333321 2344
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
.+.|.-.+-.+|...+|+++|=|-=+||-.- .=+...|-+|-+=|+|||.++
T Consensus 113 vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~E--------------------------sMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 113 VIKGKVEDIELPVEKVDIIVSEWMGYFLLYE--------------------------SMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EeecceEEEecCccceeEEeehhhhHHHHHh--------------------------hhhhhhhhhhhhccCCCceEc
Confidence 4667888888888999999998877776531 112346779999999999884
No 155
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.068 Score=50.39 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=76.5
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
-.+|+|.|.|||..|..++..+ .|+-+|+--|.- -||-...+. .+.. .+-..+..+.
T Consensus 95 g~rVlEAGtGSG~lt~~La~~v--------------g~~G~v~tyE~r-~d~~k~A~~------Nl~~-~~l~d~v~~~- 151 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAV--------------GPEGHVTTYEIR-EDFAKTARE------NLSE-FGLGDRVTLK- 151 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhh--------------CCCceEEEEEec-HHHHHHHHH------HHHH-hccccceEEE-
Confidence 4799999999999999887444 255677666653 244332211 1111 1211111222
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
-|+..+-.++. .+|.++- ++|++- ..|..-++.|+|||.+++-
T Consensus 152 --~~Dv~~~~~~~-~vDav~L--------Dmp~PW--------------------------~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 152 --LGDVREGIDEE-DVDAVFL--------DLPDPW--------------------------NVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred --ecccccccccc-ccCEEEE--------cCCChH--------------------------HHHHHHHHHhCCCcEEEEE
Confidence 27888777776 8998886 556532 2677889999999999887
Q ss_pred EecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhh
Q 036911 211 IIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAK 246 (359)
Q Consensus 211 ~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~ 246 (359)
.+.- +.+...+..|-..|.++.+.
T Consensus 195 ~P~v------------eQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 195 SPTV------------EQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred cCCH------------HHHHHHHHHHHhcCccchhh
Confidence 7533 34555555555556555443
No 156
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.51 E-value=0.041 Score=56.36 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=56.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
...|+|+|||+|+.+...++.. .+. + -...||.-.--.|=+-+ . ....+..++. .. |.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~----~~~----~---~a~~VyAVEkn~~A~~~-------l-~~~v~~n~w~-~~--V~ 244 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAG----ARA----G---GAVKVYAVEKNPNAVVT-------L-QKRVNANGWG-DK--VT 244 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTT----HHH----C---CESEEEEEESSTHHHHH-------H-HHHHHHTTTT-TT--EE
T ss_pred ceEEEEeCCCccHHHHHHHHHH----HHh----C---CCeEEEEEcCCHhHHHH-------H-HHHHHhcCCC-Ce--EE
Confidence 5799999999999887766433 111 1 12777766642210000 0 0111223332 22 33
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
.+.|+. +.+-++..+|+++| -||=. ...|+- .-..|.+|.+=|+|||.++
T Consensus 245 vi~~d~-r~v~lpekvDIIVS----ElLGs----------fg~nEl-------------~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 245 VIHGDM-REVELPEKVDIIVS----ELLGS----------FGDNEL-------------SPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEES-T-TTSCHSS-EEEEEE-------BT----------TBTTTS-------------HHHHHHHGGGGEEEEEEEE
T ss_pred EEeCcc-cCCCCCCceeEEEE----eccCC----------cccccc-------------CHHHHHHHHhhcCCCCEEe
Confidence 455777 45555679999999 44321 112221 1135779999999999885
No 157
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.48 E-value=0.036 Score=49.25 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=58.0
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
...+|+|||||+|--++.+.... ....|++.|++. +...+ ....+.........+.+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~---------------~~~~Vv~TD~~~-----~l~~l---~~Ni~~N~~~~~~~v~v 101 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF---------------GAARVVLTDYNE-----VLELL---RRNIELNGSLLDGRVSV 101 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S------HHHHH---HHHHHTT--------EE
T ss_pred CCceEEEECCccchhHHHHHhcc---------------CCceEEEeccch-----hhHHH---HHHHHhccccccccccC
Confidence 46799999999998888776220 237899999863 11111 11111100000012222
Q ss_pred ec--ccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 130 AG--IPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 130 ~~--v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
.. .+.......+.+.++|+|+.+=++.+= +.+..|++.-.+-|+|+|.+
T Consensus 102 ~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~-----------------------------~~~~~L~~tl~~ll~~~~~v 152 (173)
T PF10294_consen 102 RPLDWGDELDSDLLEPHSFDVILASDVLYDE-----------------------------ELFEPLVRTLKRLLKPNGKV 152 (173)
T ss_dssp EE--TTS-HHHHHHS-SSBSEEEEES--S-G-----------------------------GGHHHHHHHHHHHBTT-TTE
T ss_pred cEEEecCcccccccccccCCEEEEecccchH-----------------------------HHHHHHHHHHHHHhCCCCEE
Confidence 21 111122233455688888887666652 23345888889999999997
Q ss_pred EEEEecCCC
Q 036911 208 LLSIIGNDR 216 (359)
Q Consensus 208 ~~~~~g~~~ 216 (359)
++...-|..
T Consensus 153 l~~~~~R~~ 161 (173)
T PF10294_consen 153 LLAYKRRRK 161 (173)
T ss_dssp EEEEE-S-T
T ss_pred EEEeCEecH
Confidence 777766644
No 158
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=95.34 E-value=0.081 Score=51.77 Aligned_cols=105 Identities=19% Similarity=0.262 Sum_probs=64.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
.-.|+|.|||+|..|+..++.= . -.||...-. | +.....++...+. -...+.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG---------------A-~~vYAvEAS-~--------MAqyA~~Lv~~N~---~~~rIt 229 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG---------------A-KKVYAVEAS-E--------MAQYARKLVASNN---LADRIT 229 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC---------------c-ceEEEEehh-H--------HHHHHHHHHhcCC---ccceEE
Confidence 4689999999999988766321 1 344433321 1 1122233322111 135677
Q ss_pred cccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
.+||-..+--+| ..+|+++| -|-+-. .+| ++=+..+|.+| +=|+|.|.|+=+
T Consensus 230 VI~GKiEdieLP-Ek~DviIS---------EPMG~m-----L~N------------ERMLEsYl~Ar-k~l~P~GkMfPT 281 (517)
T KOG1500|consen 230 VIPGKIEDIELP-EKVDVIIS---------EPMGYM-----LVN------------ERMLESYLHAR-KWLKPNGKMFPT 281 (517)
T ss_pred EccCccccccCc-hhccEEEe---------ccchhh-----hhh------------HHHHHHHHHHH-hhcCCCCcccCc
Confidence 789998665555 77999998 343211 112 34577899998 999999999654
Q ss_pred E
Q 036911 211 I 211 (359)
Q Consensus 211 ~ 211 (359)
.
T Consensus 282 ~ 282 (517)
T KOG1500|consen 282 V 282 (517)
T ss_pred c
Confidence 3
No 159
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.30 E-value=0.7 Score=44.07 Aligned_cols=179 Identities=17% Similarity=0.210 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHhhhcCCCCcceEEeecCCC--CcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcc
Q 036911 32 AKPILQDSIKKLYCNRLPECLKIADLGCSS--GPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSL 109 (359)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~--G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l 109 (359)
-...|..+++-+.. .-+.-..+|||||- -.|+-.+++.+ .|+..|++.| ||=-.+--
T Consensus 52 nR~Fl~RaVr~la~--~~GIrQFLDlGsGlPT~~nvHevAq~~--------------~P~aRVVYVD---~DPvv~ah-- 110 (267)
T PF04672_consen 52 NRAFLRRAVRYLAE--EAGIRQFLDLGSGLPTAGNVHEVAQRV--------------APDARVVYVD---NDPVVLAH-- 110 (267)
T ss_dssp HHHHHHHHHHHHHC--TT---EEEEET--S--SS-HHHHHHHH---------------TT-EEEEEE---SSHHHHHC--
T ss_pred HHHHHHHHHHHHHH--hcCcceEEEcccCCCCCCCHhHHHHhh--------------CCCceEEEEC---CCchHHHH--
Confidence 44445555554432 12567899999994 34666666544 3778898888 44211110
Q ss_pred cchHHHHHHhhCCCCC--CeEEecccC---Cccc-----CCC-CCCceeEEEecccccccccCCCCccccCCCCCCCcce
Q 036911 110 PGFYEKLKEVKGSNFG--PCFIAGIPG---SFYG-----RLF-PNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHI 178 (359)
Q Consensus 110 ~~~~~~~~~~~~~~~~--~~f~~~v~g---sFy~-----~lf-p~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i 178 (359)
-...+ ....+ ..|+.+-.. +..+ .++ .+..+= +.-...|||+++-
T Consensus 111 --~ralL----~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVa-vll~~vLh~v~D~----------------- 166 (267)
T PF04672_consen 111 --ARALL----ADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVA-VLLVAVLHFVPDD----------------- 166 (267)
T ss_dssp --CHHHH----TT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--E-EEECT-GGGS-CG-----------------
T ss_pred --HHhhh----cCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCee-eeeeeeeccCCCc-----------------
Confidence 00001 11112 345443211 1111 222 333333 4455789997652
Q ss_pred eecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCC
Q 036911 179 CMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPS 258 (359)
Q Consensus 179 ~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s 258 (359)
+|-...++.-...|.||.+|+++-...+. . + .... .+.++. ..-..|.+.+|
T Consensus 167 ---------~dp~~iv~~l~d~lapGS~L~ish~t~d~--~-p--~~~~----~~~~~~----------~~~~~~~~~Rs 218 (267)
T PF04672_consen 167 ---------DDPAGIVARLRDALAPGSYLAISHATDDG--A-P--ERAE----ALEAVY----------AQAGSPGRPRS 218 (267)
T ss_dssp ---------CTHHHHHHHHHCCS-TT-EEEEEEEB-TT--S-H--HHHH----HHHHHH----------HHCCS----B-
T ss_pred ---------cCHHHHHHHHHHhCCCCceEEEEecCCCC--C-H--HHHH----HHHHHH----------HcCCCCceecC
Confidence 12234666667889999999999997754 1 1 1111 122221 12267999999
Q ss_pred HHHHHHHHhcCCceEEeEEEEEe-ecCCC
Q 036911 259 PEEVRHVIQTEGSFNIRRFDIHT-VDWDA 286 (359)
Q Consensus 259 ~~E~~~~i~~~Gsf~i~~~e~~~-~~~~~ 286 (359)
.+|+.+.++ | |++..=-... ..|.+
T Consensus 219 ~~ei~~~f~--g-~elvePGlv~~~~WrP 244 (267)
T PF04672_consen 219 REEIAAFFD--G-LELVEPGLVPVPRWRP 244 (267)
T ss_dssp HHHHHHCCT--T-SEE-TT-SEEGGGSS-
T ss_pred HHHHHHHcC--C-CccCCCceecccccCC
Confidence 999999986 5 7765433333 34766
No 160
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.26 E-value=0.08 Score=57.24 Aligned_cols=113 Identities=14% Similarity=0.201 Sum_probs=63.8
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCC-CCC
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSN-FGP 126 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~-~~~ 126 (359)
..+|+|+|||||..|+.++. . .. .+|+..|+... ..+..+. .++.. .+-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~--------~-------Ga-~~V~~vD~s~~-----------al~~a~~N~~~ng~~~~~v 591 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAAL--------G-------GA-KSTTTVDMSNT-----------YLEWAERNFALNGLSGRQH 591 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHH--------C-------CC-CEEEEEeCCHH-----------HHHHHHHHHHHhCCCccce
Confidence 46999999999999997761 1 11 46888887521 1111111 12221 122
Q ss_pred eEEecccCCcccCCC-CCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 127 CFIAGIPGSFYGRLF-PNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 127 ~f~~~v~gsFy~~lf-p~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
-|+. ++.++-+- ..+++|+|++. |+..... +. ....-...+|+..++..-.+-|+|||
T Consensus 592 ~~i~---~D~~~~l~~~~~~fDlIilD---------PP~f~~~------~~---~~~~~~~~~~y~~l~~~a~~lL~~gG 650 (702)
T PRK11783 592 RLIQ---ADCLAWLKEAREQFDLIFID---------PPTFSNS------KR---MEDSFDVQRDHVALIKDAKRLLRPGG 650 (702)
T ss_pred EEEE---ccHHHHHHHcCCCcCEEEEC---------CCCCCCC------Cc---cchhhhHHHHHHHHHHHHHHHcCCCC
Confidence 3444 45432110 15689999993 4433320 00 00000125677788887788999999
Q ss_pred eEEEEE
Q 036911 206 HVLLSI 211 (359)
Q Consensus 206 ~l~~~~ 211 (359)
.++++.
T Consensus 651 ~l~~~~ 656 (702)
T PRK11783 651 TLYFSN 656 (702)
T ss_pred EEEEEe
Confidence 998765
No 161
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.06 E-value=0.11 Score=52.92 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=16.9
Q ss_pred cceEEeecCCCCcchHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~ 69 (359)
..+|+|+|||+|..|+.+.
T Consensus 298 ~~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CCEEEEEeccCCHHHHHHH
Confidence 4699999999999998876
No 162
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.98 E-value=0.5 Score=45.18 Aligned_cols=98 Identities=18% Similarity=0.241 Sum_probs=62.1
Q ss_pred EecccCCcccCCCCC---CceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 129 IAGIPGSFYGRLFPN---KSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 129 ~~~v~gsFy~~lfp~---~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
...+.|+|.+---++ +++|.|++++=+ +. .++.-.+|....+-|||||
T Consensus 146 ~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI----DT-------------------------A~Ni~~Yi~tI~~lLkpgG 196 (270)
T PF07942_consen 146 LSMCAGDFLEVYGPDENKGSFDVVVTCFFI----DT-------------------------AENIIEYIETIEHLLKPGG 196 (270)
T ss_pred eeEecCccEEecCCcccCCcccEEEEEEEe----ec-------------------------hHHHHHHHHHHHHHhccCC
Confidence 344668997665555 689998886322 22 2334458999999999999
Q ss_pred eEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEEE-Eeec
Q 036911 206 HVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFDI-HTVD 283 (359)
Q Consensus 206 ~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e~-~~~~ 283 (359)
+...+|+--.+- + ++ + +. +-...-.|.||++++++.-| |++++-+. ....
T Consensus 197 --~WIN~GPLlyh~-------~-------~~---~-~~-------~~~sveLs~eEi~~l~~~~G-F~~~~~~~~i~~~ 247 (270)
T PF07942_consen 197 --YWINFGPLLYHF-------E-------PM---S-IP-------NEMSVELSLEEIKELIEKLG-FEIEKEESSILSG 247 (270)
T ss_pred --EEEecCCccccC-------C-------CC---C-CC-------CCcccCCCHHHHHHHHHHCC-CEEEEEEEeeecC
Confidence 556666643100 0 00 0 00 11125678999999999999 99988776 4333
No 163
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=94.92 E-value=0.17 Score=47.71 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=55.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh---hCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV---KGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~---~~~~~~~~ 127 (359)
-.+|+|-|.|||..|..++..+ .|.-.|+--|. +. .+....++. .+.. .+
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v--------------~p~G~v~t~E~-----~~------~~~~~A~~n~~~~gl~-~~- 93 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAV--------------GPTGHVYTYEF-----RE------DRAEKARKNFERHGLD-DN- 93 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHH--------------TTTSEEEEEES-----SH------HHHHHHHHHHHHTTCC-TT-
T ss_pred CCEEEEecCCcHHHHHHHHHHh--------------CCCeEEEcccc-----CH------HHHHHHHHHHHHcCCC-CC-
Confidence 5799999999999999998665 24566664443 22 222222211 1221 12
Q ss_pred EEecccCCcccCCCC---CCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhh-cc
Q 036911 128 FIAGIPGSFYGRLFP---NKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEI-LS 203 (359)
Q Consensus 128 f~~~v~gsFy~~lfp---~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL-~p 203 (359)
+...-++.++--|+ ++.+|.+|- ++|.+-. .+..-.+.| +|
T Consensus 94 -v~~~~~Dv~~~g~~~~~~~~~DavfL--------Dlp~Pw~--------------------------~i~~~~~~L~~~ 138 (247)
T PF08704_consen 94 -VTVHHRDVCEEGFDEELESDFDAVFL--------DLPDPWE--------------------------AIPHAKRALKKP 138 (247)
T ss_dssp -EEEEES-GGCG--STT-TTSEEEEEE--------ESSSGGG--------------------------GHHHHHHHE-EE
T ss_pred -ceeEecceecccccccccCcccEEEE--------eCCCHHH--------------------------HHHHHHHHHhcC
Confidence 22223555544443 367898886 6676433 355668889 89
Q ss_pred CceEEEEEe
Q 036911 204 GGHVLLSII 212 (359)
Q Consensus 204 GG~l~~~~~ 212 (359)
||++++-.+
T Consensus 139 gG~i~~fsP 147 (247)
T PF08704_consen 139 GGRICCFSP 147 (247)
T ss_dssp EEEEEEEES
T ss_pred CceEEEECC
Confidence 999976653
No 164
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=94.61 E-value=0.013 Score=55.81 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=36.7
Q ss_pred ceeeccCCCCcchHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHH
Q 036911 5 QVLCMNGGRGDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLW 70 (359)
Q Consensus 5 ~~l~M~gG~g~~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~ 70 (359)
..|.|.|=.-..+|.+|-..+..+++.+...+. .....+|+|+|||+|..|..+++
T Consensus 7 ~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~----------~~~~~~VLEiG~G~G~lt~~L~~ 62 (272)
T PRK00274 7 ELLERYGHRAKKSLGQNFLIDENILDKIVDAAG----------PQPGDNVLEIGPGLGALTEPLLE 62 (272)
T ss_pred HHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcC----------CCCcCeEEEeCCCccHHHHHHHH
Confidence 345555545566777776666666654443321 12346899999999999998873
No 165
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=94.56 E-value=0.11 Score=46.03 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=27.7
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGN 100 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~N 100 (359)
+..+|+|+|||.|..|..+++.. .+...|+..|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecc--------------cccceEEEEecccc
Confidence 47999999999999998877322 13488899998744
No 166
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=94.45 E-value=0.071 Score=50.39 Aligned_cols=74 Identities=19% Similarity=0.134 Sum_probs=43.0
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+|||+|..|..+++. . .+++.-|+-. .....++..... ..++-
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~----------------~-~~v~~vEid~-----------~~~~~l~~~~~~-~~~v~-- 78 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR----------------A-KKVYAIELDP-----------RLAEFLRDDEIA-AGNVE-- 78 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh----------------C-CEEEEEECCH-----------HHHHHHHHHhcc-CCCEE--
Confidence 579999999999999988722 1 3566667632 111222211111 12222
Q ss_pred cccCCcccCCCCCCceeEEEecccccc
Q 036911 131 GIPGSFYGRLFPNKSLHFVHSSYSLHW 157 (359)
Q Consensus 131 ~v~gsFy~~lfp~~S~d~~~S~~alhW 157 (359)
.+.+++.+..+| ++|.++|+.-.++
T Consensus 79 ii~~D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 79 IIEGDALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred EEEeccccCCch--hceEEEEcCCccc
Confidence 234677665454 4799999877665
No 167
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=94.33 E-value=0.35 Score=45.47 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=22.6
Q ss_pred cccHHHHHHHHHHhhccCceEEEEE
Q 036911 187 GRDFTLFLTSRSEEILSGGHVLLSI 211 (359)
Q Consensus 187 ~~d~~~fL~~Ra~EL~pGG~l~~~~ 211 (359)
.+.+.+||+..++-|.|||+||+.=
T Consensus 185 D~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 185 DDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 6789999999999999999998754
No 168
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.32 E-value=0.072 Score=51.87 Aligned_cols=116 Identities=20% Similarity=0.295 Sum_probs=67.1
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCC---CCchhhhhhcccchHHHHHHhhCCCCCCe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLP---GNDFNTIFKSLPGFYEKLKEVKGSNFGPC 127 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp---~NDFn~lF~~l~~~~~~~~~~~~~~~~~~ 127 (359)
.-.++|+|||-|.-.+.-- +.. . -+++..|+. .||...-++.+.... ..-.+...
T Consensus 118 ~~~~~~LgCGKGGDLlKw~-------kAg--------I-~~~igiDIAevSI~qa~~RYrdm~~r~------~~~~f~a~ 175 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWD-------KAG--------I-GEYIGIDIAEVSINQARKRYRDMKNRF------KKFIFTAV 175 (389)
T ss_pred ccccceeccCCcccHhHhh-------hhc--------c-cceEeeehhhccHHHHHHHHHHHHhhh------hcccceeE
Confidence 4578899999998644332 111 1 345555554 343333333221100 01122356
Q ss_pred EEecccCCcccC----CC-CCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhc
Q 036911 128 FIAGIPGSFYGR----LF-PNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEIL 202 (359)
Q Consensus 128 f~~~v~gsFy~~----lf-p~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~ 202 (359)
|++| -+|+++ +- ++-++|++=|=+|+|+-=.. .+-.+.+|+.-++-|+
T Consensus 176 f~~~--Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFet-------------------------ee~ar~~l~Nva~~Lk 228 (389)
T KOG1975|consen 176 FIAA--DCFKERLMDLLEFKDPRFDIVSCQFAFHYAFET-------------------------EESARIALRNVAKCLK 228 (389)
T ss_pred EEEe--ccchhHHHHhccCCCCCcceeeeeeeEeeeecc-------------------------HHHHHHHHHHHHhhcC
Confidence 7665 456533 32 33349999999999973221 1223458999999999
Q ss_pred cCceEEEEEecCC
Q 036911 203 SGGHVLLSIIGND 215 (359)
Q Consensus 203 pGG~l~~~~~g~~ 215 (359)
|||.|+-+++-.+
T Consensus 229 pGG~FIgTiPdsd 241 (389)
T KOG1975|consen 229 PGGVFIGTIPDSD 241 (389)
T ss_pred CCcEEEEecCcHH
Confidence 9999998886443
No 169
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.21 E-value=0.52 Score=45.03 Aligned_cols=128 Identities=16% Similarity=0.308 Sum_probs=70.1
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhC---CCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKG---SNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~---~~~~~ 126 (359)
+++||--.|||||-=.-.++=.+.+.... ..+..++|+..|+. =..|=+.-......-....+ .....
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~------~~~~~~~I~AtDId---~~~L~~A~~G~Y~~~~~~~~~~~~~~~r 166 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK------LAGFRVKILATDID---LSVLEKARAGIYPSRELLRGLPPELLRR 166 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc------ccCCceEEEEEECC---HHHHHHHhcCCCChhHhhccCCHHHHhh
Confidence 58999999999996544443223222221 12345999999984 33332222111110000000 01135
Q ss_pred eEEecccCCcc--------------cCCC---CCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCcccc
Q 036911 127 CFIAGIPGSFY--------------GRLF---PNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRD 189 (359)
Q Consensus 127 ~f~~~v~gsFy--------------~~lf---p~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d 189 (359)
+|.-+..|+|- +.+. .++-+|+|+|=+.|=.+++.-+
T Consensus 167 yF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q-------------------------- 220 (268)
T COG1352 167 YFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQ-------------------------- 220 (268)
T ss_pred hEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHH--------------------------
Confidence 66666555341 3333 3467999999777776665221
Q ss_pred HHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 190 FTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 190 ~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
...++.-+.-|+|||.|+ .|..+
T Consensus 221 -~~il~~f~~~L~~gG~Lf---lG~sE 243 (268)
T COG1352 221 -ERILRRFADSLKPGGLLF---LGHSE 243 (268)
T ss_pred -HHHHHHHHHHhCCCCEEE---EccCc
Confidence 235666689999999995 45544
No 170
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.12 E-value=0.12 Score=48.47 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=17.8
Q ss_pred CcceEEeecCCCCcchHHHH
Q 036911 50 ECLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~ 69 (359)
...+|+|+|||+|..|..+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~ 48 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLL 48 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHH
Confidence 35799999999999999887
No 171
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=94.08 E-value=0.059 Score=49.39 Aligned_cols=109 Identities=13% Similarity=0.116 Sum_probs=60.4
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
++-+|+++||++|.-|+.+++.+ ++..+++--|.-. ++..+. .+.-+..|...+--++
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l--------------~~~g~i~tiE~~~-~~~~~A-------~~~~~~ag~~~~I~~~ 102 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEAL--------------PEDGKITTIEIDP-ERAEIA-------RENFRKAGLDDRIEVI 102 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTS--------------TTTSEEEEEESSH-HHHHHH-------HHHHHHTTGGGGEEEE
T ss_pred CCceEEEeccccccHHHHHHHhh--------------cccceEEEecCcH-HHHHHH-------HHHHHhcCCCCcEEEE
Confidence 46899999999999999888443 2346777767521 111111 0011112221122344
Q ss_pred ecccCCcccCCCCC---CceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 130 AGIPGSFYGRLFPN---KSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 130 ~~v~gsFy~~lfp~---~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
.|-+..+..++.+. +.+||||-=. .+.+...++..-.+-|+|||.
T Consensus 103 ~gda~~~l~~l~~~~~~~~fD~VFiDa--------------------------------~K~~y~~y~~~~~~ll~~ggv 150 (205)
T PF01596_consen 103 EGDALEVLPELANDGEEGQFDFVFIDA--------------------------------DKRNYLEYFEKALPLLRPGGV 150 (205)
T ss_dssp ES-HHHHHHHHHHTTTTTSEEEEEEES--------------------------------TGGGHHHHHHHHHHHEEEEEE
T ss_pred EeccHhhHHHHHhccCCCceeEEEEcc--------------------------------cccchhhHHHHHhhhccCCeE
Confidence 44444444455443 4789888711 122334456565678999999
Q ss_pred EEEEEe
Q 036911 207 VLLSII 212 (359)
Q Consensus 207 l~~~~~ 212 (359)
+++-..
T Consensus 151 ii~DN~ 156 (205)
T PF01596_consen 151 IIADNV 156 (205)
T ss_dssp EEEETT
T ss_pred EEEccc
Confidence 988654
No 172
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=94.00 E-value=0.35 Score=48.80 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=60.9
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCC-CC
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNF-GP 126 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~-~~ 126 (359)
..+|+|+|||+|..++..+ . ....+|+..|+.. ......++ .++... .-
T Consensus 221 g~rVLDlfsgtG~~~l~aa--------~--------~ga~~V~~VD~s~-----------~al~~a~~N~~~Ngl~~~~v 273 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSAL--------M--------GGCSQVVSVDTSQ-----------EALDIARQNVELNKLDLSKA 273 (396)
T ss_pred CCeEEEeccCCCHHHHHHH--------h--------CCCCEEEEEECCH-----------HHHHHHHHHHHHcCCCCCcE
Confidence 4689999999999766433 1 1125788888742 11111111 122211 12
Q ss_pred eEEecccCCcccCC---C-CCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhc
Q 036911 127 CFIAGIPGSFYGRL---F-PNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEIL 202 (359)
Q Consensus 127 ~f~~~v~gsFy~~l---f-p~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~ 202 (359)
.++. |+.+.-+ - ...++|+|++ -|+.... ++..+ ....+++..++..-.+-|+
T Consensus 274 ~~i~---~D~~~~l~~~~~~~~~fDlVil---------DPP~f~~------~k~~l-----~~~~~~y~~l~~~a~~lLk 330 (396)
T PRK15128 274 EFVR---DDVFKLLRTYRDRGEKFDVIVM---------DPPKFVE------NKSQL-----MGACRGYKDINMLAIQLLN 330 (396)
T ss_pred EEEE---ccHHHHHHHHHhcCCCCCEEEE---------CCCCCCC------ChHHH-----HHHHHHHHHHHHHHHHHcC
Confidence 3444 4444322 1 2458999997 3443322 11111 0114567777777788899
Q ss_pred cCceEEEEE
Q 036911 203 SGGHVLLSI 211 (359)
Q Consensus 203 pGG~l~~~~ 211 (359)
|||.+++..
T Consensus 331 ~gG~lv~~s 339 (396)
T PRK15128 331 PGGILLTFS 339 (396)
T ss_pred CCeEEEEEe
Confidence 999998665
No 173
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=93.82 E-value=0.19 Score=45.76 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=27.5
Q ss_pred CCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 140 LFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 140 lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
..+.+.+|+|+|-+.|-.+...-. ...++.-++.|+|||.|++
T Consensus 131 ~~~~~~fD~I~CRNVlIYF~~~~~---------------------------~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 131 DPPFGRFDLIFCRNVLIYFDPETQ---------------------------QRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp ------EEEEEE-SSGGGS-HHHH---------------------------HHHHHHHGGGEEEEEEEEE
T ss_pred CcccCCccEEEecCEEEEeCHHHH---------------------------HHHHHHHHHHcCCCCEEEE
Confidence 446678999999998888765221 2467777999999999965
No 174
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=93.39 E-value=0.24 Score=45.86 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=64.8
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHH---HhhCCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLK---EVKGSNFGP 126 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~---~~~~~~~~~ 126 (359)
++-+|+++|.+.|.-|+.++..+ +.+..++-.|... ....-.+ ++.|....-
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l--------------~~~g~l~tiE~~~-----------e~~~~A~~n~~~ag~~~~i 113 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALAL--------------PDDGRLTTIERDE-----------ERAEIARENLAEAGVDDRI 113 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhC--------------CCCCeEEEEeCCH-----------HHHHHHHHHHHHcCCcceE
Confidence 57899999999999999888554 2256777777632 2211111 123433222
Q ss_pred eEEecccCCcccCC--CCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccC
Q 036911 127 CFIAGIPGSFYGRL--FPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSG 204 (359)
Q Consensus 127 ~f~~~v~gsFy~~l--fp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pG 204 (359)
..+.+ |+--+.+ +..+++|++|- .. .+.+...||..--+-|+||
T Consensus 114 ~~~~~--gdal~~l~~~~~~~fDliFI----------Da----------------------dK~~yp~~le~~~~lLr~G 159 (219)
T COG4122 114 ELLLG--GDALDVLSRLLDGSFDLVFI----------DA----------------------DKADYPEYLERALPLLRPG 159 (219)
T ss_pred EEEec--CcHHHHHHhccCCCccEEEE----------eC----------------------ChhhCHHHHHHHHHHhCCC
Confidence 22221 4443222 56789999987 11 1223345887778889999
Q ss_pred ceEEEEEecC
Q 036911 205 GHVLLSIIGN 214 (359)
Q Consensus 205 G~l~~~~~g~ 214 (359)
|.+++=..-.
T Consensus 160 Gliv~DNvl~ 169 (219)
T COG4122 160 GLIVADNVLF 169 (219)
T ss_pred cEEEEeeccc
Confidence 9999876644
No 175
>PLN02476 O-methyltransferase
Probab=93.35 E-value=0.2 Score=48.13 Aligned_cols=35 Identities=9% Similarity=0.106 Sum_probs=25.9
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLP 98 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 98 (359)
++-+|+|+||++|.-|+.++..+ ++...++--|..
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al--------------~~~G~V~TiE~d 152 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVL--------------PESGCLVACERD 152 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhC--------------CCCCEEEEEECC
Confidence 46899999999999999887432 234567766753
No 176
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.13 E-value=0.14 Score=48.67 Aligned_cols=82 Identities=24% Similarity=0.358 Sum_probs=59.0
Q ss_pred CceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCCCCCCCch
Q 036911 144 KSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRC 223 (359)
Q Consensus 144 ~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~ 223 (359)
..+|.+.|+++|.=.++-+ ..+++-|++-..-|||||.|++......+ . +
T Consensus 157 ~~~D~v~s~fcLE~a~~d~-------------------------~~y~~al~ni~~lLkpGG~Lil~~~l~~t--~--Y- 206 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDL-------------------------DEYRRALRNISSLLKPGGHLILAGVLGST--Y--Y- 206 (256)
T ss_dssp SSEEEEEEESSHHHH-SSH-------------------------HHHHHHHHHHHTTEEEEEEEEEEEESS-S--E--E-
T ss_pred cchhhhhhhHHHHHHcCCH-------------------------HHHHHHHHHHHHHcCCCcEEEEEEEcCce--e--E-
Confidence 3599999999998766533 34566788889999999999999886654 1 0
Q ss_pred hHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCCceEEeEEE
Q 036911 224 TGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEGSFNIRRFD 278 (359)
Q Consensus 224 ~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~Gsf~i~~~e 278 (359)
|+ | .-.+|...-+.+.+++.|++.| |+|...+
T Consensus 207 ------------~v--G--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 207 ------------MV--G--------GHKFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp ------------EE--T--------TEEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred ------------EE--C--------CEecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 11 1 1136778889999999999999 9999988
No 177
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.11 E-value=0.49 Score=45.59 Aligned_cols=135 Identities=15% Similarity=0.161 Sum_probs=63.1
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
...+|+|-.||+|..-...+..+.+.-.. .++.+++..|+- ........+... + .+.......+
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~--------~~~~~i~G~ei~--~~~~~la~~nl~---l---~~~~~~~~~i 109 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNK--------IKEINIYGIEID--PEAVALAKLNLL---L---HGIDNSNINI 109 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHH--------HCCEEEEEEES---HHHHHHHHHHHH---H---TTHHCBGCEE
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccc--------cccceeEeecCc--HHHHHHHHhhhh---h---hccccccccc
Confidence 35689999999998877666544322111 245899988872 222111111111 0 0110011111
Q ss_pred ecccCCcc-cCCCC-CCceeEEEecccccccccCCCCccc-cCCCCCCCcceeecCCCCc-cccHHHHHHHHHHhhccCc
Q 036911 130 AGIPGSFY-GRLFP-NKSLHFVHSSYSLHWLSQVPEGLVS-ESGVPLNKGHICMAKTSPV-GRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 130 ~~v~gsFy-~~lfp-~~S~d~~~S~~alhWls~~p~~~~~-~~~~~~n~g~i~~~~~~~~-~~d~~~fL~~Ra~EL~pGG 205 (359)
..++.+ ..... ...+|+|+++ |+-... -......+..-|.....+. ..++ .|+..--+-|++||
T Consensus 110 --~~~d~l~~~~~~~~~~~D~ii~N---------PPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Fi~~~l~~Lk~~G 177 (311)
T PF02384_consen 110 --IQGDSLENDKFIKNQKFDVIIGN---------PPFGSKEWKDEELEKDERFKKYFPPKSNAEY-AFIEHALSLLKPGG 177 (311)
T ss_dssp --EES-TTTSHSCTST--EEEEEEE-----------CTCES-STGGGCTTCCCTTCSSSTTEHHH-HHHHHHHHTEEEEE
T ss_pred --cccccccccccccccccccccCC---------CCccccccccccccccccccccCCCccchhh-hhHHHHHhhccccc
Confidence 123443 33333 5789999994 321111 0000000000011111222 3333 48888899999999
Q ss_pred eEEEEEe
Q 036911 206 HVLLSII 212 (359)
Q Consensus 206 ~l~~~~~ 212 (359)
++++.++
T Consensus 178 ~~~~Ilp 184 (311)
T PF02384_consen 178 RAAIILP 184 (311)
T ss_dssp EEEEEEE
T ss_pred ceeEEec
Confidence 9999986
No 178
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=93.01 E-value=0.21 Score=47.16 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=26.4
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLP 98 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 98 (359)
++-+|+++|+++|.-|+.++..+ ++..+++--|..
T Consensus 79 ~ak~iLEiGT~~GySal~la~al--------------~~~g~v~tiE~~ 113 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALAL--------------PEDGKILAMDIN 113 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhC--------------CCCCEEEEEeCC
Confidence 46799999999999999877433 245677777763
No 179
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=92.86 E-value=0.59 Score=44.35 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=58.8
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEE
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFI 129 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~ 129 (359)
+..+++|||.|.|.-|..+...+ -+|+..+.. +.....|++. | +-+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-----------------~~v~aTE~S-----------~~Mr~rL~~k-g-----~~v 139 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-----------------KEVYATEAS-----------PPMRWRLSKK-G-----FTV 139 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-----------------ceEEeecCC-----------HHHHHHHHhC-C-----CeE
Confidence 46789999999999998876222 235555543 1223334321 1 111
Q ss_pred ecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 130 AGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 130 ~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
..+- +..+ -+..+|+|-+.+-|.=+.+ |. .+|+...+.|+|+|++++
T Consensus 140 l~~~-~w~~---~~~~fDvIscLNvLDRc~~-P~----------------------------~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 140 LDID-DWQQ---TDFKFDVISCLNVLDRCDR-PL----------------------------TLLRDIRRALKPNGRLIL 186 (265)
T ss_pred Eehh-hhhc---cCCceEEEeehhhhhccCC-HH----------------------------HHHHHHHHHhCCCCEEEE
Confidence 1111 1211 1357999988777665555 32 377788889999999999
Q ss_pred EEe
Q 036911 210 SII 212 (359)
Q Consensus 210 ~~~ 212 (359)
...
T Consensus 187 AvV 189 (265)
T PF05219_consen 187 AVV 189 (265)
T ss_pred EEE
Confidence 886
No 180
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=92.46 E-value=0.22 Score=48.01 Aligned_cols=44 Identities=7% Similarity=0.127 Sum_probs=32.4
Q ss_pred CCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 143 NKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 143 ~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
.+.+|+|+|-+.|..++.. +-...++.-++.|+|||+| ++|..+
T Consensus 221 ~~~fD~I~cRNvliyF~~~---------------------------~~~~vl~~l~~~L~pgG~L---~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKT---------------------------TQERILRRFVPLLKPDGLL---FAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcCCHH---------------------------HHHHHHHHHHHHhCCCcEE---EEeCcc
Confidence 5789999998888876541 2234777889999999987 445544
No 181
>PLN02823 spermine synthase
Probab=92.29 E-value=1.6 Score=43.02 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.0
Q ss_pred CCcceEEeecCCCCcchHHHH
Q 036911 49 PECLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~ 69 (359)
+++.+|+.+|+|.|..+..++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 567899999999998766554
No 182
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.07 E-value=1.2 Score=35.23 Aligned_cols=48 Identities=29% Similarity=0.342 Sum_probs=35.5
Q ss_pred CCCCC-CceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 139 RLFPN-KSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 139 ~lfp~-~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
..++. ..+|++.+...+||.. +. ..+....+-|+|||.+++.......
T Consensus 112 ~~~~~~~~~d~~~~~~~~~~~~--~~----------------------------~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 112 LPFEDSASFDLVISLLVLHLLP--PA----------------------------KALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred CCCCCCCceeEEeeeeehhcCC--HH----------------------------HHHHHHHHhcCCCcEEEEEeccCCC
Confidence 44455 4899996666667755 11 3667888889999999999987766
No 183
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=91.89 E-value=0.43 Score=46.79 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=24.4
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLP 98 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 98 (359)
...+|+|||||+|.....+. .+ .+..+++..|+-
T Consensus 114 ~~~~vLDIGtGag~I~~lLa--------~~-------~~~~~~~atDId 147 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIG--------VH-------EYGWRFVGSDID 147 (321)
T ss_pred CCceEEEecCCccHHHHHHH--------hh-------CCCCEEEEEeCC
Confidence 36899999999997666554 21 134788888973
No 184
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=91.13 E-value=1.4 Score=44.34 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=41.6
Q ss_pred CCCcchHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcce
Q 036911 12 GRGDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQ 91 (359)
Q Consensus 12 G~g~~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~ 91 (359)
.++.-.|+-|...-+.+...+...+.. . ....+|+|++||+|..++.++... +..+
T Consensus 28 ~~~~vFyqp~~~~nrdl~~~v~~~~~~--------~-~~~~~vLDl~aGsG~~~l~~a~~~---------------~~~~ 83 (382)
T PRK04338 28 SWAPVFYNPRMELNRDISVLVLRAFGP--------K-LPRESVLDALSASGIRGIRYALET---------------GVEK 83 (382)
T ss_pred CCCCeeeCccccchhhHHHHHHHHHHh--------h-cCCCEEEECCCcccHHHHHHHHHC---------------CCCE
Confidence 335567888877766655554444321 0 123689999999999999886332 1257
Q ss_pred EEecCCC
Q 036911 92 VFLNDLP 98 (359)
Q Consensus 92 v~~nDLp 98 (359)
|+.+|+-
T Consensus 84 V~a~Din 90 (382)
T PRK04338 84 VTLNDIN 90 (382)
T ss_pred EEEEeCC
Confidence 9999974
No 185
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=90.64 E-value=0.29 Score=47.41 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=17.1
Q ss_pred cceEEeecCCCCcchHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~ 69 (359)
..+|+|+|||+|..|..++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll 55 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLL 55 (294)
T ss_pred cCEEEEecCchHHHHHHHH
Confidence 5689999999999998876
No 186
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=90.10 E-value=0.47 Score=40.49 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCC
Q 036911 30 LTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDL 97 (359)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 97 (359)
+++..++...++... ....+.+|+|+|||.|+.|+.+...+ .+ ..+..+|+.-|.
T Consensus 7 ~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La~~l----~~-------~~~~~~v~~iD~ 61 (141)
T PF13679_consen 7 ERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALAHLL----CN-------SSPNLRVLGIDC 61 (141)
T ss_pred HHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHHHHH----Hh-------cCCCCeEEEEEC
Confidence 344445555444321 12357999999999999999887422 11 124588888886
No 187
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=90.04 E-value=4.7 Score=39.43 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCC
Q 036911 191 TLFLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEG 270 (359)
Q Consensus 191 ~~fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~G 270 (359)
-.+|....+-|||||..+ .+|+--..-.+ ..|. -+-+..-.+.|++..+.+.-|
T Consensus 276 leYi~tI~~iLk~GGvWi--NlGPLlYHF~d----------------~~g~--------~~~~siEls~edl~~v~~~~G 329 (369)
T KOG2798|consen 276 LEYIDTIYKILKPGGVWI--NLGPLLYHFED----------------THGV--------ENEMSIELSLEDLKRVASHRG 329 (369)
T ss_pred HHHHHHHHHhccCCcEEE--eccceeeeccC----------------CCCC--------cccccccccHHHHHHHHHhcC
Confidence 348999999999999764 44442210000 0121 245678889999999999889
Q ss_pred ceEEeEEEEEeecC
Q 036911 271 SFNIRRFDIHTVDW 284 (359)
Q Consensus 271 sf~i~~~e~~~~~~ 284 (359)
|++++-+.++..+
T Consensus 330 -F~~~ke~~Idt~Y 342 (369)
T KOG2798|consen 330 -FEVEKERGIDTTY 342 (369)
T ss_pred -cEEEEeeeeeccc
Confidence 9999988666443
No 188
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=89.91 E-value=0.45 Score=46.27 Aligned_cols=31 Identities=23% Similarity=0.125 Sum_probs=24.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCC
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLP 98 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 98 (359)
..+|+|+|||+|..++.+++ +..+|+..|+.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~-----------------~~~~V~gvD~s 204 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT-----------------PGMQLTGIEIS 204 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh-----------------cCCEEEEEeCC
Confidence 47999999999999988762 12578888874
No 189
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=89.49 E-value=0.42 Score=44.61 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=26.2
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGN 100 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~N 100 (359)
...+|+|+|||||..|..+++. .--+|+.-|...+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~----------------ga~~v~avD~~~~ 109 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK----------------GAKEVYGVDVGYN 109 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc----------------CCCEEEEEeCCHH
Confidence 3568999999999999987721 1267888887543
No 190
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.19 E-value=0.29 Score=44.33 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.1
Q ss_pred cceEEeecCCCCcchHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~ 69 (359)
.-+|+|+|||||..++...
T Consensus 46 g~~V~DlG~GTG~La~ga~ 64 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAA 64 (198)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4579999999999988664
No 191
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=87.95 E-value=1.4 Score=45.39 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=27.3
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCC
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPG 99 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~ 99 (359)
..+|+|++||.|.-|..+++.+ ..+-.|+.||...
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l--------------~~~g~lvA~D~~~ 148 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALM--------------NNQGAIVANEYSA 148 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEeCCH
Confidence 5799999999999999887443 1236899999754
No 192
>PRK04148 hypothetical protein; Provisional
Probab=85.23 E-value=2.9 Score=35.76 Aligned_cols=19 Identities=26% Similarity=0.067 Sum_probs=14.5
Q ss_pred cceEEeecCCCCc-chHHHH
Q 036911 51 CLKIADLGCSSGP-NTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~-nt~~l~ 69 (359)
..+|+|+|||+|. .+..|.
T Consensus 17 ~~kileIG~GfG~~vA~~L~ 36 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLK 36 (134)
T ss_pred CCEEEEEEecCCHHHHHHHH
Confidence 5799999999996 444443
No 193
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=84.12 E-value=15 Score=35.12 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.0
Q ss_pred CcceEEeecCCCCcchH
Q 036911 50 ECLKIADLGCSSGPNTL 66 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~ 66 (359)
.+.+|+|+|||.|.-+.
T Consensus 33 ~P~~vLD~GsGpGta~w 49 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALW 49 (274)
T ss_pred CCceEEEecCChHHHHH
Confidence 47899999999997544
No 194
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=83.82 E-value=1.1 Score=40.75 Aligned_cols=19 Identities=26% Similarity=0.123 Sum_probs=16.0
Q ss_pred cceEEeecCCCCcchHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~ 69 (359)
..+|+|+|||+|..++.++
T Consensus 54 ~~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 54 DARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CCEEEEcCCCccHHHHHHH
Confidence 4699999999999888654
No 195
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=82.22 E-value=3.1 Score=41.54 Aligned_cols=56 Identities=9% Similarity=0.040 Sum_probs=43.5
Q ss_pred ccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEE
Q 036911 132 IPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSI 211 (359)
Q Consensus 132 v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~ 211 (359)
+-+.|-..+|+++.+|++.+.-+.+..++.- ..++.-.+.++|||+.+...
T Consensus 165 ~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~-----------------------------~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 165 VVADFGKMPFEDNTFDGVRFLEVVCHAPDLE-----------------------------KVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred ehhhhhcCCCCccccCcEEEEeecccCCcHH-----------------------------HHHHHHhcccCCCceEEeHH
Confidence 4468889999999999999988888755532 25666678899999998877
Q ss_pred ecCCC
Q 036911 212 IGNDR 216 (359)
Q Consensus 212 ~g~~~ 216 (359)
..+..
T Consensus 216 ~i~~~ 220 (364)
T KOG1269|consen 216 WIKTA 220 (364)
T ss_pred HHHhh
Confidence 65543
No 196
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=81.72 E-value=12 Score=33.76 Aligned_cols=100 Identities=21% Similarity=0.226 Sum_probs=57.6
Q ss_pred eEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecc
Q 036911 53 KIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGI 132 (359)
Q Consensus 53 ~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v 132 (359)
+|+|+|+|-|.=.+.+. | . .|+.++++.|=-. =.. .|........+. .++-+.
T Consensus 51 ~~lDiGSGaGfPGipLa--I----~---------~p~~~~~LvEs~~--KK~------~FL~~~~~~L~L--~nv~v~-- 103 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLA--I----A---------RPDLQVTLVESVG--KKV------AFLKEVVRELGL--SNVEVI-- 103 (184)
T ss_dssp EEEEETSTTTTTHHHHH--H----H----------TTSEEEEEESSH--HHH------HHHHHHHHHHT---SSEEEE--
T ss_pred eEEecCCCCCChhHHHH--H----h---------CCCCcEEEEeCCc--hHH------HHHHHHHHHhCC--CCEEEE--
Confidence 89999999998877664 1 1 2778899888320 000 111111122232 244443
Q ss_pred cCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEe
Q 036911 133 PGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSII 212 (359)
Q Consensus 133 ~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~ 212 (359)
.+...+ .....++|+++|=. -..+..++..-..-+++||++++. -
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRA---------------------------------v~~l~~l~~~~~~~l~~~G~~l~~-K 148 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARA---------------------------------VAPLDKLLELARPLLKPGGRLLAY-K 148 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEES---------------------------------SSSHHHHHHHHGGGEEEEEEEEEE-E
T ss_pred Eeeecc-cccCCCccEEEeeh---------------------------------hcCHHHHHHHHHHhcCCCCEEEEE-c
Confidence 344444 56778999999811 112445777777788999998665 3
Q ss_pred cC
Q 036911 213 GN 214 (359)
Q Consensus 213 g~ 214 (359)
|+
T Consensus 149 G~ 150 (184)
T PF02527_consen 149 GP 150 (184)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 197
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.48 E-value=4.5 Score=37.39 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=16.3
Q ss_pred cceEEeecCCCCcchHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~ 69 (359)
-.+.||+|.|||++|..+.
T Consensus 83 G~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFA 101 (237)
T ss_pred CcceeecCCCccHHHHHHH
Confidence 4789999999999987654
No 198
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=79.92 E-value=2.3 Score=42.43 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=16.3
Q ss_pred ceEEeecCCCCcchHHHH
Q 036911 52 LKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~ 69 (359)
.+|+|+|||+|..|+.++
T Consensus 235 ~~vLDL~cG~G~~~l~la 252 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA 252 (374)
T ss_pred CEEEEccCCccHHHHHHh
Confidence 589999999999998776
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=77.23 E-value=4.9 Score=38.24 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=37.1
Q ss_pred cceEEeecCCCCcchHHHHHHHHH------------HHHHHhhhccCCCCcceEEecCCCCCchhhhh
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIID------------TIDGTCKRLNREAPMYQVFLNDLPGNDFNTIF 106 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~------------~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF 106 (359)
.-+|+|+|+|.|..|..|++..-. .++++. .....++++..|--.=||.+++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~----~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF----APYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc----ccccceEEEeCchhcCcchhhc
Confidence 579999999999999999875432 333331 1234588998888777777643
No 200
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=77.12 E-value=2.9 Score=42.41 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=17.1
Q ss_pred cceEEeecCCCCcchHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~ 69 (359)
..+|+|+|||+|..|+.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4799999999999999876
No 201
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=75.58 E-value=3.6 Score=36.99 Aligned_cols=19 Identities=21% Similarity=0.069 Sum_probs=17.0
Q ss_pred cceEEeecCCCCcchHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~ 69 (359)
..+++|++||+|..++.++
T Consensus 50 g~~vLDLfaGsG~lglea~ 68 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEAL 68 (189)
T ss_pred CCEEEEecCCCcHHHHHHH
Confidence 4689999999999998887
No 202
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=74.97 E-value=11 Score=40.39 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=70.8
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCC--CCcceEEecCC-C--CCchhhhhhcccchHHHHHHhhCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNRE--APMYQVFLNDL-P--GNDFNTIFKSLPGFYEKLKEVKGSNF 124 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~--~p~~~v~~nDL-p--~NDFn~lF~~l~~~~~~~~~~~~~~~ 124 (359)
..++|+|+|=|+|.|++.+++..-+. +++ +++ ...++++--+. | .-|+..+.+..|.+..-.+.-.
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~-~~~----~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~---- 127 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQF-RQR----HPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQ---- 127 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHh-hhh----CCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHH----
Confidence 46999999999999999998664211 111 110 11245544443 2 2345554444443322111100
Q ss_pred CCeEEecccCCcccCCCCCCce--eEEEecccccccccCCCCccccCCCCCCCcceeecCCCCc--cccH-HHHHHHHHH
Q 036911 125 GPCFIAGIPGSFYGRLFPNKSL--HFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPV--GRDF-TLFLTSRSE 199 (359)
Q Consensus 125 ~~~f~~~v~gsFy~~lfp~~S~--d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~--~~d~-~~fL~~Ra~ 199 (359)
..|...++ .++...|..+.+ ++.+- -+...+++++. .-+.+|..+++|. -+=| ..||+.-++
T Consensus 128 -~~~~~~~~-g~~~~~~~~~~~~l~l~~g-d~~~~~~~~~~----------~~d~~~lD~FsP~~np~~W~~~~~~~l~~ 194 (662)
T PRK01747 128 -AQWPLLLP-GCHRLLFDDGRVTLDLWFG-DANELLPQLDA----------RADAWFLDGFAPAKNPDMWSPNLFNALAR 194 (662)
T ss_pred -HhCCccCC-CceEEEecCCcEEEEEEec-CHHHHHHhccc----------cccEEEeCCCCCccChhhccHHHHHHHHH
Confidence 01222233 244444555433 33332 22223333331 1247888888885 1122 347777789
Q ss_pred hhccCceEEEE
Q 036911 200 EILSGGHVLLS 210 (359)
Q Consensus 200 EL~pGG~l~~~ 210 (359)
-++|||.++-.
T Consensus 195 ~~~~~~~~~t~ 205 (662)
T PRK01747 195 LARPGATLATF 205 (662)
T ss_pred HhCCCCEEEEe
Confidence 99999998743
No 203
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=73.48 E-value=74 Score=31.82 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=31.2
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGN 100 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~N 100 (359)
..+.|+|||.+.|..=..|++.+ ..+. ..+|.+.++.-+.|..
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaL----a~R~----~gpp~LrIT~i~~~~~ 152 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQAL----ASRP----GGPPSLRITGIGPPNS 152 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHH----hcCC----CCCCeEEEEeccCCCC
Confidence 47999999999997655555444 4431 2467899999998754
No 204
>PRK00536 speE spermidine synthase; Provisional
Probab=73.38 E-value=18 Score=34.51 Aligned_cols=101 Identities=13% Similarity=0.000 Sum_probs=60.0
Q ss_pred CCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhc-ccchHHHHHHhhCCCCCC
Q 036911 48 LPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKS-LPGFYEKLKEVKGSNFGP 126 (359)
Q Consensus 48 ~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~-l~~~~~~~~~~~~~~~~~ 126 (359)
.|++-+|+=+|=|.|.....++ +. |+ +|.+.|+-. ..-.+.+. +|.+...+ ..++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvL--------kh--------~~-~v~mVeID~-~Vv~~~k~~lP~~~~~~------~DpR 125 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLF--------KY--------DT-HVDFVQADE-KILDSFISFFPHFHEVK------NNKN 125 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHH--------Cc--------CC-eeEEEECCH-HHHHHHHHHCHHHHHhh------cCCC
Confidence 4778999999999998777665 21 33 888888742 12222332 34322211 1122
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
+-+.. ++.. -..+++|+|+.=++ ++ ..|.+...+-|+|||.
T Consensus 126 v~l~~----~~~~-~~~~~fDVIIvDs~-------~~---------------------------~~fy~~~~~~L~~~Gi 166 (262)
T PRK00536 126 FTHAK----QLLD-LDIKKYDLIICLQE-------PD---------------------------IHKIDGLKRMLKEDGV 166 (262)
T ss_pred EEEee----hhhh-ccCCcCCEEEEcCC-------CC---------------------------hHHHHHHHHhcCCCcE
Confidence 22221 2211 12468999987432 11 1388888999999999
Q ss_pred EEEEE
Q 036911 207 VLLSI 211 (359)
Q Consensus 207 l~~~~ 211 (359)
|+...
T Consensus 167 ~v~Qs 171 (262)
T PRK00536 167 FISVA 171 (262)
T ss_pred EEECC
Confidence 98875
No 205
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=72.90 E-value=46 Score=33.35 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=47.1
Q ss_pred HHHHHHHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhc
Q 036911 193 FLTSRSEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQT 268 (359)
Q Consensus 193 fL~~Ra~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~ 268 (359)
.+..--+-+.|||.||+.-.|.+- .|+.|..|=..+.+.|..+.|. .|+.-+..|++-+-+.+|.-
T Consensus 207 ~ie~lw~l~~~gg~lVivErGtp~--------Gf~~I~rAR~~ll~~~~~~~e~--~~~ahiiAPCPH~~~CPl~v 272 (484)
T COG5459 207 NIERLWNLLAPGGHLVIVERGTPA--------GFERILRARQILLAPGNFPDEF--NYFAHIIAPCPHQRKCPLQV 272 (484)
T ss_pred HHHHHHHhccCCCeEEEEeCCCch--------hHHHHHHHHHHHhcCCCCcccc--ccceeeeccCCCCCCCCccC
Confidence 455556778999999999877655 6888888877777777555543 55666666777776666653
No 206
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=72.47 E-value=5.3 Score=39.71 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.9
Q ss_pred ceEEeecCCCCcchHHHH
Q 036911 52 LKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~ 69 (359)
.+|+|++||+|..|+.+.
T Consensus 208 ~~vLDl~~G~G~~sl~la 225 (362)
T PRK05031 208 GDLLELYCGNGNFTLALA 225 (362)
T ss_pred CeEEEEeccccHHHHHHH
Confidence 479999999999999665
No 207
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=72.39 E-value=6.8 Score=35.79 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.6
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCC
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDL 97 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 97 (359)
..+|+|.-||.|+.|+.+++. .....|+.+|+
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~---------------~~~~~V~A~d~ 133 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKH---------------GKAKRVYAVDL 133 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHH---------------T-SSEEEEEES
T ss_pred ceEEEEccCCccHHHHHHhhh---------------cCccEEEEecC
Confidence 579999999999999987631 02267999998
No 208
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=71.92 E-value=4.1 Score=38.24 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=28.5
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCC
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGN 100 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~N 100 (359)
.+..+++|+|.|||..|.-+++. .. -.||.-|.-.|
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~---------------gA-k~VyavDVG~~ 113 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR---------------GA-KHVYAVDVGYG 113 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc---------------CC-cEEEEEEccCC
Confidence 45789999999999999988732 12 67888888765
No 209
>PRK11524 putative methyltransferase; Provisional
Probab=71.67 E-value=6.6 Score=37.56 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhccCceEEEEE
Q 036911 191 TLFLTSRSEEILSGGHVLLSI 211 (359)
Q Consensus 191 ~~fL~~Ra~EL~pGG~l~~~~ 211 (359)
..+|..-.+-|+|||.|++..
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEEc
Confidence 467778888999999999853
No 210
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=71.50 E-value=5.5 Score=39.49 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=15.9
Q ss_pred ceEEeecCCCCcchHHHH
Q 036911 52 LKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~ 69 (359)
.+|+|+|||+|..|+.+.
T Consensus 199 ~~vlDl~~G~G~~sl~la 216 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALA 216 (353)
T ss_pred CcEEEEeccccHHHHHHH
Confidence 479999999999999665
No 211
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=70.46 E-value=2.9 Score=36.51 Aligned_cols=19 Identities=37% Similarity=0.719 Sum_probs=15.4
Q ss_pred CcceEEeecCCCCcchHHH
Q 036911 50 ECLKIADLGCSSGPNTLSL 68 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l 68 (359)
...+|+|+|||.|-.++..
T Consensus 48 Egkkl~DLgcgcGmLs~a~ 66 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAF 66 (185)
T ss_pred cCcchhhhcCchhhhHHHh
Confidence 3579999999999887543
No 212
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=69.51 E-value=2.8 Score=34.61 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=16.1
Q ss_pred CcceEEeecCCCCcchHHHH
Q 036911 50 ECLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~ 69 (359)
.+...+|+|||.|-..-.|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~ 77 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILN 77 (112)
T ss_pred CCCceEEccCCchHHHHHHH
Confidence 47799999999997666554
No 213
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=67.83 E-value=16 Score=37.84 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCCCcchHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcc
Q 036911 11 GGRGDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMY 90 (359)
Q Consensus 11 gG~g~~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~ 90 (359)
+|.....|.+....=++..+.-+.++.-.+ ....--.|.|...|.|..+..|. + .|
T Consensus 332 ~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i------~~~~iRNVMDMnAg~GGFAAAL~--------~--------~~-- 387 (506)
T PF03141_consen 332 PGISPEEFKEDTKHWKKRVSHYKKLLGLAI------KWGRIRNVMDMNAGYGGFAAALI--------D--------DP-- 387 (506)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhcccc------cccceeeeeeecccccHHHHHhc--------c--------CC--
Confidence 444555666655554444444333332111 11235689999999999988775 1 23
Q ss_pred eEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEecccCCcc----cCCCCCCceeEEEecccccccccCCCCcc
Q 036911 91 QVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIAGIPGSFY----GRLFPNKSLHFVHSSYSLHWLSQVPEGLV 166 (359)
Q Consensus 91 ~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~~v~gsFy----~~lfp~~S~d~~~S~~alhWls~~p~~~~ 166 (359)
..+.|=.|...-||| +-. |-=|.-|.++ .-.+-|.++|++|++.-+-=..+ .+.+
T Consensus 388 VWVMNVVP~~~~ntL----~vI---------------ydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~-rC~~- 446 (506)
T PF03141_consen 388 VWVMNVVPVSGPNTL----PVI---------------YDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKD-RCEM- 446 (506)
T ss_pred ceEEEecccCCCCcc----hhh---------------hhcccchhccchhhccCCCCcchhheehhhhhhhhcc-cccH-
Confidence 445676776655553 211 1112223332 12235689999999655432222 1322
Q ss_pred ccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEE
Q 036911 167 SESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLL 209 (359)
Q Consensus 167 ~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~ 209 (359)
...|--.-+-|+|||.+++
T Consensus 447 ------------------------~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 447 ------------------------EDILLEMDRILRPGGWVII 465 (506)
T ss_pred ------------------------HHHHHHhHhhcCCCceEEE
Confidence 2356667899999999876
No 214
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.85 E-value=1.1 Score=39.49 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=38.4
Q ss_pred CCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEec
Q 036911 134 GSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSIIG 213 (359)
Q Consensus 134 gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~g 213 (359)
.+-.++.|-++|+|+++....+--|.- ..-..+|+...+-|||||+|-+.++.
T Consensus 36 ~As~e~~F~dns~d~iyaeHvlEHlt~---------------------------~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 36 RASNESMFEDNSVDAIYAEHVLEHLTY---------------------------DEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred hhhhhccCCCcchHHHHHHHHHHHHhH---------------------------HHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 334478899999999877544433322 11234888999999999999999874
Q ss_pred C
Q 036911 214 N 214 (359)
Q Consensus 214 ~ 214 (359)
-
T Consensus 89 l 89 (185)
T COG4627 89 L 89 (185)
T ss_pred c
Confidence 3
No 215
>PRK13699 putative methylase; Provisional
Probab=65.02 E-value=12 Score=34.66 Aligned_cols=20 Identities=0% Similarity=-0.205 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhccCceEEEE
Q 036911 191 TLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 191 ~~fL~~Ra~EL~pGG~l~~~ 210 (359)
..++..-++.|||||.|++.
T Consensus 52 ~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEE
Confidence 46677778899999988764
No 216
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=63.54 E-value=38 Score=31.75 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhC-CCCCCe
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKG-SNFGPC 127 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~-~~~~~~ 127 (359)
+++.+||=+|=|.|..+..++ +. ++..++...|+-.. --.+.+. +.... ..+ .+++--
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell--------~~-------~~~~~i~~VEiD~~-Vv~~a~~---~f~~~--~~~~~d~r~~ 133 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELL--------KH-------PPVESITVVEIDPE-VVELARK---YFPEF--SEGLDDPRVR 133 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHT--------TS-------TT-SEEEEEES-HH-HHHHHHH---HTHHH--HTTGGSTTEE
T ss_pred CCcCceEEEcCCChhhhhhhh--------hc-------CCcceEEEEecChH-HHHHHHH---hchhh--ccccCCCceE
Confidence 578999999999998766654 21 22356766676311 1011110 00000 001 111222
Q ss_pred EEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceE
Q 036911 128 FIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHV 207 (359)
Q Consensus 128 f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l 207 (359)
.+.+.+..|-++.--. .+|+++.=..--+ ...+. +. -..|++..++-|+|||.+
T Consensus 134 i~~~Dg~~~l~~~~~~-~yDvIi~D~~dp~-~~~~~-l~-----------------------t~ef~~~~~~~L~~~Gv~ 187 (246)
T PF01564_consen 134 IIIGDGRKFLKETQEE-KYDVIIVDLTDPD-GPAPN-LF-----------------------TREFYQLCKRRLKPDGVL 187 (246)
T ss_dssp EEESTHHHHHHTSSST--EEEEEEESSSTT-SCGGG-GS-----------------------SHHHHHHHHHHEEEEEEE
T ss_pred EEEhhhHHHHHhccCC-cccEEEEeCCCCC-CCccc-cc-----------------------CHHHHHHHHhhcCCCcEE
Confidence 3444444554443322 8999987332211 00000 11 125999999999999999
Q ss_pred EEEEecC
Q 036911 208 LLSIIGN 214 (359)
Q Consensus 208 ~~~~~g~ 214 (359)
++...+.
T Consensus 188 v~~~~~~ 194 (246)
T PF01564_consen 188 VLQAGSP 194 (246)
T ss_dssp EEEEEET
T ss_pred EEEccCc
Confidence 9988444
No 217
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=62.36 E-value=12 Score=34.16 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=12.7
Q ss_pred cceEEeecCCCCcchHHH
Q 036911 51 CLKIADLGCSSGPNTLSL 68 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l 68 (359)
.-+++|||||.|.-.+..
T Consensus 43 ~dvF~DlGSG~G~~v~~a 60 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQA 60 (205)
T ss_dssp T-EEEEES-TTSHHHHHH
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 579999999999865543
No 218
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=62.08 E-value=12 Score=36.40 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=25.7
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCC
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDL 97 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDL 97 (359)
...++|.+||.|.-|..+++.+ ++...|+.-|.
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~--------------~~~g~VigiD~ 52 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERL--------------GPKGRLIAIDR 52 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhC--------------CCCCEEEEEcC
Confidence 4699999999999999988443 23467777776
No 219
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=61.29 E-value=5.2 Score=33.41 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=14.8
Q ss_pred eEEeecCCCCcchHHHH
Q 036911 53 KIADLGCSSGPNTLSLL 69 (359)
Q Consensus 53 ~IaDlGCs~G~nt~~l~ 69 (359)
+|+|+||+.|..|..+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 58999999999888765
No 220
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=61.11 E-value=2.3 Score=39.15 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=15.3
Q ss_pred cceEEeecCCCCcchHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~ 69 (359)
..-+||||||=|...+.|.
T Consensus 61 kvefaDIGCGyGGLlv~Ls 79 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLA 79 (249)
T ss_pred cceEEeeccCccchhhhcc
Confidence 3679999999998776554
No 221
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=60.96 E-value=69 Score=30.97 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=29.8
Q ss_pred HHhhccCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHhccchhhhhc
Q 036911 198 SEEILSGGHVLLSIIGNDRKPGDPRCTGWELLGVTLNDMVLEGLVEEAKVD 248 (359)
Q Consensus 198 a~EL~pGG~l~~~~~g~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d 248 (359)
++.||.+|.-++++ ..+.+.+..+...|.+-|.++.+.++
T Consensus 196 ~~~lk~~g~r~csF-----------SPCIEQvqrtce~l~~~gf~~i~~vE 235 (314)
T KOG2915|consen 196 AKILKDEGGRLCSF-----------SPCIEQVQRTCEALRSLGFIEIETVE 235 (314)
T ss_pred HHHhhhcCceEEec-----------cHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 55677777544444 34778888899999999999888766
No 222
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=59.71 E-value=9.1 Score=36.22 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=22.3
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCC
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLP 98 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 98 (359)
+.+-+|+|+|||-=|.++..+ ..+|...++..|+-
T Consensus 104 ~~p~sVlDigCGlNPlalp~~---------------~~~~~a~Y~a~DID 138 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWM---------------PEAPGATYIAYDID 138 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTT---------------TSSTT-EEEEEESB
T ss_pred CCCchhhhhhccCCceehhhc---------------ccCCCcEEEEEeCC
Confidence 458899999999887777555 12355788888873
No 223
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=57.70 E-value=12 Score=37.25 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.9
Q ss_pred CcceEEeecCCCCcchHHHH
Q 036911 50 ECLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~ 69 (359)
...+++|+|||+|.-|-.++
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 46799999999999998887
No 224
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=55.07 E-value=8.7 Score=31.76 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=31.5
Q ss_pred eeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEEEe
Q 036911 146 LHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLSII 212 (359)
Q Consensus 146 ~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~~~ 212 (359)
+|++.+.+...|+.= |- ....++.|++..++-|+|||.|++.--
T Consensus 2 yDvilclSVtkWIHL-------------n~----------GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 2 YDVILCLSVTKWIHL-------------NW----------GDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp EEEEEEES-HHHHHH-------------HH----------HHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred ccEEEEEEeeEEEEe-------------cC----------cCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 688888888888421 11 134677899999999999999998753
No 225
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=54.37 E-value=1e+02 Score=27.86 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=17.0
Q ss_pred cceEEeecCCCCcchHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~ 69 (359)
.-+++|+=+|||...+..+
T Consensus 44 g~~~LDlFAGSGaLGlEAl 62 (187)
T COG0742 44 GARVLDLFAGSGALGLEAL 62 (187)
T ss_pred CCEEEEecCCccHhHHHHH
Confidence 5799999999999998776
No 226
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=54.19 E-value=17 Score=37.91 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=27.0
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLP 98 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 98 (359)
...+|+|.|||+|.....++..+.. . ......+.+++..|+-
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~----~---~~~~~~~~~i~g~DId 72 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEE----I---NYFKEVELNIYFADID 72 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHh----c---CCcccceeeeeeechh
Confidence 4679999999999988877655421 1 0001124677777763
No 227
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=53.88 E-value=26 Score=32.06 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=24.7
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCC
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLP 98 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 98 (359)
-.+|+|+||+.|.=|...++.+ .|.--|+-.||-
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~--------------~p~g~v~gVDll 103 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRV--------------NPNGMVLGVDLL 103 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhh--------------CCCceEEEEeee
Confidence 5799999999999877666333 255666666763
No 228
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=52.33 E-value=19 Score=34.79 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=62.2
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHH---hhCCCCC-C
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKE---VKGSNFG-P 126 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~---~~~~~~~-~ 126 (359)
..+|||+=|=||..|+..+ .. .. .+|+..|... ...+..+. .++.... -
T Consensus 124 gkrvLnlFsYTGgfsv~Aa--------~g-------GA-~~v~~VD~S~-----------~al~~a~~N~~lNg~~~~~~ 176 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAA--------AG-------GA-KEVVSVDSSK-----------RALEWAKENAALNGLDLDRH 176 (286)
T ss_dssp TCEEEEET-TTTHHHHHHH--------HT-------TE-SEEEEEES-H-----------HHHHHHHHHHHHTT-CCTCE
T ss_pred CCceEEecCCCCHHHHHHH--------HC-------CC-CEEEEEeCCH-----------HHHHHHHHHHHHcCCCccce
Confidence 3699999999999988654 11 12 5788888741 11121211 1232212 2
Q ss_pred eEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCce
Q 036911 127 CFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGH 206 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~ 206 (359)
.|+.+-.-.|..++--.+.+|+|+. =|+.... ++ ....+|+...++.-.+-|+|||.
T Consensus 177 ~~~~~Dvf~~l~~~~~~~~fD~IIl---------DPPsF~k--------~~------~~~~~~y~~L~~~a~~ll~~gG~ 233 (286)
T PF10672_consen 177 RFIQGDVFKFLKRLKKGGRFDLIIL---------DPPSFAK--------SK------FDLERDYKKLLRRAMKLLKPGGL 233 (286)
T ss_dssp EEEES-HHHHHHHHHHTT-EEEEEE-----------SSEES--------ST------CEHHHHHHHHHHHHHHTEEEEEE
T ss_pred EEEecCHHHHHHHHhcCCCCCEEEE---------CCCCCCC--------CH------HHHHHHHHHHHHHHHHhcCCCCE
Confidence 4554333233344334568999998 3544431 21 11267899999888889999999
Q ss_pred EEEEEe
Q 036911 207 VLLSII 212 (359)
Q Consensus 207 l~~~~~ 212 (359)
|+++..
T Consensus 234 l~~~sc 239 (286)
T PF10672_consen 234 LLTCSC 239 (286)
T ss_dssp EEEEE-
T ss_pred EEEEcC
Confidence 876654
No 229
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=50.71 E-value=1.4e+02 Score=27.99 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=16.4
Q ss_pred cceEEeecCCCCcchHHHHHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLLWEII 73 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii 73 (359)
..+|+-||.++|. |..-++.|+
T Consensus 74 gskVLYLGAasGT-TVSHvSDIv 95 (229)
T PF01269_consen 74 GSKVLYLGAASGT-TVSHVSDIV 95 (229)
T ss_dssp T-EEEEETTTTSH-HHHHHHHHH
T ss_pred CCEEEEecccCCC-ccchhhhcc
Confidence 5799999999996 666666664
No 230
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=47.11 E-value=12 Score=33.03 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=15.1
Q ss_pred eEEeecCCCCcchHHHH
Q 036911 53 KIADLGCSSGPNTLSLL 69 (359)
Q Consensus 53 ~IaDlGCs~G~nt~~l~ 69 (359)
+|+|+-||.|.||+.++
T Consensus 2 ~vlD~fcG~GGNtIqFA 18 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFA 18 (163)
T ss_dssp EEEETT-TTSHHHHHHH
T ss_pred EEEEeccCcCHHHHHHH
Confidence 69999999999999998
No 231
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=46.84 E-value=1.1e+02 Score=30.22 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=69.0
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHhhCCCCCCeEEe
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEVKGSNFGPCFIA 130 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~f~~ 130 (359)
..+|+|+=++-|.-|..+++.. ......|+.+|...+-...|..++ +..|. .++-+.
T Consensus 157 ge~VlD~cAAPGGKTthla~~~-------------~~~~~iV~A~D~~~~Rl~~l~~nl--------~RlG~--~nv~~~ 213 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELM-------------ENEGAIVVAVDVSPKRLKRLRENL--------KRLGV--RNVIVV 213 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhc-------------CCCCceEEEEcCCHHHHHHHHHHH--------HHcCC--CceEEE
Confidence 5899999999999999887443 122366799998643222222111 11222 232222
Q ss_pred cccCCcccCCCCCC-ceeEEEecccccccccCCCCccccC----CCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 131 GIPGSFYGRLFPNK-SLHFVHSSYSLHWLSQVPEGLVSES----GVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 131 ~v~gsFy~~lfp~~-S~d~~~S~~alhWls~~p~~~~~~~----~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
-..++.+....+.. .+|-|.- +.|+.-...- ..-|++..-.+.. -.+-=..+|..=.+-|||||
T Consensus 214 ~~d~~~~~~~~~~~~~fD~iLl--------DaPCSg~G~irr~Pd~~~~~~~~~i~~---l~~lQ~~iL~~a~~~lk~GG 282 (355)
T COG0144 214 NKDARRLAELLPGGEKFDRILL--------DAPCSGTGVIRRDPDVKWRRTPEDIAE---LAKLQKEILAAALKLLKPGG 282 (355)
T ss_pred ecccccccccccccCcCcEEEE--------CCCCCCCcccccCccccccCCHHHHHH---HHHHHHHHHHHHHHhcCCCC
Confidence 22233333344444 4777754 5565332100 0001110000000 02223457777788899999
Q ss_pred eEEEEEecCCC
Q 036911 206 HVLLSIIGNDR 216 (359)
Q Consensus 206 ~l~~~~~g~~~ 216 (359)
.|+-++.....
T Consensus 283 ~LVYSTCS~~~ 293 (355)
T COG0144 283 VLVYSTCSLTP 293 (355)
T ss_pred EEEEEccCCch
Confidence 99999976654
No 232
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=43.30 E-value=33 Score=31.99 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=15.7
Q ss_pred cceEEeecCCCCcchHHHHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLLWEI 72 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~i 72 (359)
+++|+|+|.|+|.+..-+++.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHH
Confidence 6999999999998766555443
No 233
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=43.07 E-value=43 Score=31.52 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.7
Q ss_pred CcceEEeecCCCCcchHHHHH
Q 036911 50 ECLKIADLGCSSGPNTLSLLW 70 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~ 70 (359)
....|+|+|.|.|..|..+.+
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~ 50 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLK 50 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhc
Confidence 468999999999999999973
No 234
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=41.97 E-value=51 Score=32.02 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=26.4
Q ss_pred cccHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 187 GRDFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 187 ~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
...++.+|..-.+-|+|||+|++..+-.-+
T Consensus 212 l~~L~~~L~~~~~~L~~gGrl~visfHSlE 241 (296)
T PRK00050 212 LEELERALEAALDLLKPGGRLAVISFHSLE 241 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCcHH
Confidence 778899999999999999999999986644
No 235
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=40.17 E-value=23 Score=34.12 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=22.2
Q ss_pred HhHHHHHHHH-HHhhhcCCCCcceEEeecCCCCcchHHHH
Q 036911 31 TAKPILQDSI-KKLYCNRLPECLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 31 ~~~~~l~~ai-~~~~~~~~~~~~~IaDlGCs~G~nt~~l~ 69 (359)
.+.+.+.+++ .++. -.--||+|||||+|--.+...
T Consensus 100 dl~~~l~~e~~~~~~----~~~k~vLELgCg~~Lp~i~~~ 135 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMS----FSGKRVLELGCGAALPGIFAF 135 (282)
T ss_pred HHHHHHHHHhhhheE----ecCceeEecCCcccccchhhh
Confidence 3556666654 2221 124699999999997666443
No 236
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=39.13 E-value=24 Score=33.36 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=38.8
Q ss_pred cccCCccc--CCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEE
Q 036911 131 GIPGSFYG--RLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVL 208 (359)
Q Consensus 131 ~v~gsFy~--~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~ 208 (359)
-+.|+-|+ +-|++.|||+++- + |+-+.- .|..|.. .|-+.-++-|+|||+|+
T Consensus 189 iilGD~~e~V~~~~D~sfDaIiH--------D-PPRfS~-------AgeLYse----------efY~El~RiLkrgGrlF 242 (287)
T COG2521 189 IILGDAYEVVKDFDDESFDAIIH--------D-PPRFSL-------AGELYSE----------EFYRELYRILKRGGRLF 242 (287)
T ss_pred EecccHHHHHhcCCccccceEee--------C-CCccch-------hhhHhHH----------HHHHHHHHHcCcCCcEE
Confidence 35677775 4579999999875 3 443321 1344432 47778899999999997
Q ss_pred EEEecCC
Q 036911 209 LSIIGND 215 (359)
Q Consensus 209 ~~~~g~~ 215 (359)
=-...++
T Consensus 243 HYvG~Pg 249 (287)
T COG2521 243 HYVGNPG 249 (287)
T ss_pred EEeCCCC
Confidence 6654333
No 237
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=36.91 E-value=1.2e+02 Score=29.51 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=33.0
Q ss_pred CcceEEeecCCCCcchHHHHHHH------------HHHHHHHhhhccCCCCcceEEecCCCCCc
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEI------------IDTIDGTCKRLNREAPMYQVFLNDLPGND 101 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~i------------i~~i~~~~~~~~~~~p~~~v~~nDLp~ND 101 (359)
.+-.|+++|-|||..|..+++.. +..+.++.... +-....||++.|.-.-|
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt-p~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT-PKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC-CccceeeEEecccccCC
Confidence 47899999999999999888653 33444443211 11134777777765544
No 238
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=36.81 E-value=43 Score=30.11 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=19.0
Q ss_pred HHHHHHHhhccCceEEEEEecCCC
Q 036911 193 FLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 193 fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
+|+.--.-|.+||.++....|.-+
T Consensus 138 ile~~~~rl~~gg~lvqftYgp~s 161 (194)
T COG3963 138 ILESLLYRLPAGGPLVQFTYGPLS 161 (194)
T ss_pred HHHHHHHhcCCCCeEEEEEecCCC
Confidence 666666778999999999888654
No 239
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=34.95 E-value=29 Score=35.66 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=18.2
Q ss_pred CCcceEEeecCCCCcchHHHHHH
Q 036911 49 PECLKIADLGCSSGPNTLSLLWE 71 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ 71 (359)
.+..-|+|||.|||-.|+..+..
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvra 87 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRA 87 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHh
Confidence 34678999999999999865543
No 240
>PF14904 FAM86: Family of unknown function
Probab=34.88 E-value=41 Score=27.34 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=25.4
Q ss_pred HHHHHHHhHHHHHhh--cChhHHHHHHHHHHHH
Q 036911 307 AKSIRAVSESMLASH--FGEEIMDDLFERLAKK 337 (359)
Q Consensus 307 ~~~~Ra~~ep~l~~h--~~~~i~delf~r~~~~ 337 (359)
.+|.|+|...++..| .+.+..|+||+.|+..
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 468889999888854 4679999999999874
No 241
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=34.71 E-value=14 Score=23.97 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=8.4
Q ss_pred CccCCCHHHHHHHHh
Q 036911 253 PYYAPSPEEVRHVIQ 267 (359)
Q Consensus 253 P~y~~s~~E~~~~i~ 267 (359)
|.++||.+|+++.+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 678899999887664
No 242
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=33.74 E-value=51 Score=30.22 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=16.7
Q ss_pred ceEEeecCCCCcchHHHHHH
Q 036911 52 LKIADLGCSSGPNTLSLLWE 71 (359)
Q Consensus 52 ~~IaDlGCs~G~nt~~l~~~ 71 (359)
-+++|+|.|||..|+.....
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~ 53 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA 53 (252)
T ss_pred hceeeccCCcchHHHHHHhh
Confidence 57899999999999866544
No 243
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=33.20 E-value=94 Score=28.74 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=24.0
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecC
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLND 96 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nD 96 (359)
..+++|+|+|-|-=++.++ | . -|+.+|++-|
T Consensus 68 ~~~~~DIGSGaGfPGipLA--I----~---------~p~~~vtLle 98 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA--I----A---------FPDLKVTLLE 98 (215)
T ss_pred CCEEEEeCCCCCCchhhHH--H----h---------ccCCcEEEEc
Confidence 5799999999998888665 2 1 2668888777
No 244
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=32.96 E-value=3.2e+02 Score=24.03 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=14.0
Q ss_pred cCCcccCCCCCCceeEEEe
Q 036911 133 PGSFYGRLFPNKSLHFVHS 151 (359)
Q Consensus 133 ~gsFy~~lfp~~S~d~~~S 151 (359)
-++|....++++++|.+++
T Consensus 94 ~~D~~~l~~~~~~~d~Ivt 112 (179)
T PF01170_consen 94 QWDARELPLPDGSVDAIVT 112 (179)
T ss_dssp E--GGGGGGTTSBSCEEEE
T ss_pred ecchhhcccccCCCCEEEE
Confidence 3677766678899999999
No 245
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=32.18 E-value=29 Score=31.08 Aligned_cols=37 Identities=19% Similarity=0.080 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHhccchhhhhccCCcCccCCCH
Q 036911 223 CTGWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSP 259 (359)
Q Consensus 223 ~~~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~ 259 (359)
.-+...+.+.+.+||.+|+++-|+.-+-|+=|.|+|.
T Consensus 39 ~IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 39 QIVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred ccHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 3466778899999999999999999988999999864
No 246
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=31.66 E-value=56 Score=32.80 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=41.6
Q ss_pred CcchHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEE
Q 036911 14 GDTSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVF 93 (359)
Q Consensus 14 g~~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~ 93 (359)
+...||-.+..-|.+.-.+.....+.. .....++|+|+.||+|.-++..++.+ +.--+|+
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~------~~~~~~~vLD~faGsG~rgir~a~e~--------------~ga~~Vv 73 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLY------GKECYINIADALSASGIRAIRYAHEI--------------EGVREVF 73 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhh------CCcCCCEEEECCCchhHHHHHHHhhC--------------CCCCEEE
Confidence 457888887777766544333332210 00124899999999999999887332 1126799
Q ss_pred ecCCC
Q 036911 94 LNDLP 98 (359)
Q Consensus 94 ~nDLp 98 (359)
+||+-
T Consensus 74 ~nD~n 78 (374)
T TIGR00308 74 ANDIN 78 (374)
T ss_pred EEeCC
Confidence 99984
No 247
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=31.65 E-value=43 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHhccchhhh
Q 036911 224 TGWELLGVTLNDMVLEGLVEEAK 246 (359)
Q Consensus 224 ~~~~~l~~al~~mv~eGli~~e~ 246 (359)
.+-..|.++|.+|+.+|.|+++-
T Consensus 10 tlG~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 10 TLGIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHHHTTSS-HHH
T ss_pred hHHHHHHHHHHHHHHcCCCCHHH
Confidence 35568999999999999999864
No 248
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.47 E-value=1.7e+02 Score=27.48 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=27.6
Q ss_pred CcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCC
Q 036911 50 ECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPG 99 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~ 99 (359)
++-+.+|+|-=||+-++..+..+ |+.-.|+--|.+.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alal--------------p~dGrv~a~eid~ 108 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALAL--------------PEDGRVVAIEIDA 108 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhc--------------CCCceEEEEecCh
Confidence 46799999999999887776444 3457888888754
No 249
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.08 E-value=32 Score=31.09 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhccchhhhhccCCcCccCCCHHH
Q 036911 227 ELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEE 261 (359)
Q Consensus 227 ~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E 261 (359)
-.+.+++..||.+|+|.-++.-+-|+=|.|||.+-
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~ 64 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAK 64 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeEEEecChHHH
Confidence 45788999999999999999999999999998653
No 250
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=30.06 E-value=49 Score=25.79 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHh
Q 036911 225 GWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQ 267 (359)
Q Consensus 225 ~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~ 267 (359)
+...+..+|+.|-..|.++.++-|....|.+.|+. .-+.+|+
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sq-qARrLLD 53 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQ-QARRLLD 53 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchhhcCCCChHH-HHHHHHH
Confidence 33567888999999999999999999999888864 4555554
No 251
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=29.88 E-value=59 Score=29.01 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=22.8
Q ss_pred cccHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 187 GRDFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 187 ~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
..|++..++. .+-|||||+|++..+--.+
T Consensus 88 ~Gdl~~m~~i-~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 88 IGDLRAMAKI-KCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred cccHHHHHHH-HHhhccCCeEEEEeecCCc
Confidence 5677778765 7899999999999984333
No 252
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=29.67 E-value=31 Score=31.56 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.0
Q ss_pred CCHHHHHHHHhcCCceEEeEEEEEe
Q 036911 257 PSPEEVRHVIQTEGSFNIRRFDIHT 281 (359)
Q Consensus 257 ~s~~E~~~~i~~~Gsf~i~~~e~~~ 281 (359)
....++|.++.+.| |.|..-+...
T Consensus 103 ~~~~~LR~~L~~~g-f~I~~E~lv~ 126 (205)
T PF04816_consen 103 THAYELRRWLYENG-FEIIDEDLVE 126 (205)
T ss_dssp S-HHHHHHHHHHTT-EEEEEEEEEE
T ss_pred CChHHHHHHHHHCC-CEEEEeEEEe
Confidence 46889999999999 9998866543
No 253
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=29.61 E-value=49 Score=24.25 Aligned_cols=29 Identities=34% Similarity=0.603 Sum_probs=23.2
Q ss_pred cCCcCccCCCHHHHHHHHh----cCCceEEeEEE
Q 036911 249 WFNLPYYAPSPEEVRHVIQ----TEGSFNIRRFD 278 (359)
Q Consensus 249 ~f~~P~y~~s~~E~~~~i~----~~Gsf~i~~~e 278 (359)
+|.+|.|..|+||-..+-+ +.| |.|.++.
T Consensus 26 sfEVPV~A~SLeeA~e~AE~~Y~~aG-f~VtRiR 58 (63)
T PHA00457 26 SFEVPVYAKSLEEATELAEWQYVPAG-FVVTRIR 58 (63)
T ss_pred eEEeeeecccHHHHHHHHHHhhhccC-cEEEEec
Confidence 6889999999999777665 346 8888764
No 254
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=29.12 E-value=78 Score=27.99 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhccCceEEEEEecC
Q 036911 191 TLFLTSRSEEILSGGHVLLSIIGN 214 (359)
Q Consensus 191 ~~fL~~Ra~EL~pGG~l~~~~~g~ 214 (359)
..+|..-.+.|+|||.+++.+..+
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHhhcCCCeeEEEEecch
Confidence 444555566779999998876443
No 255
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=28.81 E-value=83 Score=31.50 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=18.0
Q ss_pred CCCcceEEeecCCCCcchHHHHHH
Q 036911 48 LPECLKIADLGCSSGPNTLSLLWE 71 (359)
Q Consensus 48 ~~~~~~IaDlGCs~G~nt~~l~~~ 71 (359)
.|.+..|+++|.|+|....-++..
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~ 98 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRT 98 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHH
Confidence 366899999999999855544433
No 256
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.35 E-value=1.1e+02 Score=28.08 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=30.8
Q ss_pred chHHHhhHHHH---HHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHH
Q 036911 16 TSYANNSKIQK---RAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEI 72 (359)
Q Consensus 16 ~sY~~ns~~Q~---~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~i 72 (359)
.-|.+-|..+. +++-++.++.++. ....+..+|+||||+-|.=|..+.+.+
T Consensus 14 D~Y~~~Ak~~gyRSRAa~KL~el~~k~------~i~~~~~~ViDLGAAPGgWsQva~~~~ 67 (205)
T COG0293 14 DPYYKKAKKEGYRSRAAYKLLELNEKF------KLFKPGMVVVDLGAAPGGWSQVAAKKL 67 (205)
T ss_pred CHHHHHHhhccccchHHHHHHHHHHhc------CeecCCCEEEEcCCCCCcHHHHHHHHh
Confidence 34555555543 3444455544442 123346899999999999887666433
No 257
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=28.33 E-value=3.3e+02 Score=24.39 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=36.4
Q ss_pred chHHHhhHHHHHHHHHhHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhh
Q 036911 16 TSYANNSKIQKRAMLTAKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCK 81 (359)
Q Consensus 16 ~sY~~ns~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~ 81 (359)
..|.+....|+++++.+.+.++.+...+..... +--+|+= ||.|.-. .=.+.+...+..+|+
T Consensus 7 ~~~~es~~~~~~~~~~l~~~I~~aa~~i~~~l~-~G~Kvl~--cGNGgSa-adAqHfaael~gRf~ 68 (176)
T COG0279 7 SEFTESIQTQIAALEALIEAIERAAQLLVQSLL-NGNKVLA--CGNGGSA-ADAQHFAAELTGRFE 68 (176)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cCCEEEE--ECCCcch-hhHHHHHHHHhhHHH
Confidence 468888888888887777777777655443222 2345543 6666522 233444444455554
No 258
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=27.93 E-value=75 Score=24.62 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=15.3
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHH
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIID 74 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~ 74 (359)
..+-+||=+|||||.- |++.|.-
T Consensus 37 ~GpK~VLViGaStGyG---LAsRIa~ 59 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYG---LASRIAA 59 (78)
T ss_dssp TS-SEEEEES-SSHHH---HHHHHHH
T ss_pred CCCceEEEEecCCccc---HHHHHHH
Confidence 3578999999999973 5555543
No 259
>smart00400 ZnF_CHCC zinc finger.
Probab=27.36 E-value=54 Score=23.05 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=18.2
Q ss_pred cceEEeecCCCCcchHHHHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLLWEI 72 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~i 72 (359)
.-..-++|||.|.+.+.+++.+
T Consensus 21 kn~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 21 KQFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CCEEEEeCCCCCCCHHHHHHHH
Confidence 4567899999999999888665
No 260
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=27.35 E-value=96 Score=31.20 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=44.7
Q ss_pred cCCcccCC--CCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCceEEEE
Q 036911 133 PGSFYGRL--FPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 133 ~gsFy~~l--fp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG~l~~~ 210 (359)
-+|+-+.| .|++|+|.+.-+=.+-|++. . ++....+.-.+.++|||++++-
T Consensus 281 t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~--~-------------------------~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 281 TDSIEEVLRRLPPGSFDRFVLSDHMDWMDP--E-------------------------QLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred eccHHHHHHhCCCCCeeEEEecchhhhCCH--H-------------------------HHHHHHHHHHHHhCCCCEEEEe
Confidence 45665444 38899999999999999887 1 2334677778999999999999
Q ss_pred EecCCC
Q 036911 211 IIGNDR 216 (359)
Q Consensus 211 ~~g~~~ 216 (359)
..+...
T Consensus 334 sa~~~~ 339 (380)
T PF11899_consen 334 SAAVPP 339 (380)
T ss_pred eCCCCC
Confidence 998876
No 261
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=27.26 E-value=77 Score=31.35 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=15.1
Q ss_pred eEEeecCCCCcchHHHH
Q 036911 53 KIADLGCSSGPNTLSLL 69 (359)
Q Consensus 53 ~IaDlGCs~G~nt~~l~ 69 (359)
+|+|+=||+|..|+.++
T Consensus 199 ~vlDlycG~G~fsl~la 215 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLA 215 (352)
T ss_dssp EEEEES-TTTCCHHHHH
T ss_pred cEEEEeecCCHHHHHHH
Confidence 79999999999999887
No 262
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=26.73 E-value=5.8e+02 Score=24.53 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=17.9
Q ss_pred HHHHHHHHhhccCceEEEE
Q 036911 192 LFLTSRSEEILSGGHVLLS 210 (359)
Q Consensus 192 ~fL~~Ra~EL~pGG~l~~~ 210 (359)
.|++..++-|+++|.++..
T Consensus 171 eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 171 EFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHHHhcCCCcEEEEe
Confidence 5999999999999999988
No 263
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=26.60 E-value=1.5e+02 Score=28.07 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=28.8
Q ss_pred CCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCC
Q 036911 49 PECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGN 100 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~N 100 (359)
.+...++|+|||.|..|..+.+.+... .++...+++-|--++
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~----------~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQED----------KPSNSRFVLIDRASN 58 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhc----------ccCCccEEEEecCcc
Confidence 346799999999999988777554222 123367777787543
No 264
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.19 E-value=70 Score=28.23 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHH----hcCCceEEeEEEEEee
Q 036911 226 WELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVI----QTEGSFNIRRFDIHTV 282 (359)
Q Consensus 226 ~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i----~~~Gsf~i~~~e~~~~ 282 (359)
-+.+..+|.+|..+|+++.=+-..-.+-+|.++++|+..+| .+.| +.-.-+..++.
T Consensus 68 ~~~i~~Il~~l~k~g~~e~~Dk~rt~f~I~Wrs~dewgnmIyqW~~dsg-~~nti~TlYEl 127 (174)
T KOG4068|consen 68 QEFIDEILEELEKKGLAEPTDKRRTRFFIYWRSLDEWGNMIYQWVSDSG-QLNTICTLYEL 127 (174)
T ss_pred HHHHHHHHHHHHHccCCcccccCceEEEEEEcCHHHHHHHHHHHHHHcC-cCCCceEEEEe
Confidence 36788899999999997763332334567899999998866 4566 33333444443
No 265
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.86 E-value=97 Score=27.36 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=34.5
Q ss_pred eeccCCCCcchHHHhhHHHHHHHHH-hH---HHHHHHHHHhhhcCCCC-cceEEeecCCCCcchHHH
Q 036911 7 LCMNGGRGDTSYANNSKIQKRAMLT-AK---PILQDSIKKLYCNRLPE-CLKIADLGCSSGPNTLSL 68 (359)
Q Consensus 7 l~M~gG~g~~sY~~ns~~Q~~~~~~-~~---~~l~~ai~~~~~~~~~~-~~~IaDlGCs~G~nt~~l 68 (359)
+...||.|-+.|+--+.+-+-+..+ .. |.-.+.+.+...-...+ ..+.+|+|.|+|+.-+..
T Consensus 24 ~~aagg~gla~sav~a~fvaPafRR~cvPYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaa 90 (199)
T KOG4058|consen 24 LQAAGGSGLAASAVWALFVAPAFRRLCVPYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAA 90 (199)
T ss_pred HHhccchhHHHHHHHHHHhhHHhheecccccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhh
Confidence 4556777777777666554333333 11 22233333332111122 479999999999875544
No 266
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=24.62 E-value=6e+02 Score=25.36 Aligned_cols=131 Identities=17% Similarity=0.152 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhhhcCCCCcceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccc
Q 036911 32 AKPILQDSIKKLYCNRLPECLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPG 111 (359)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~ 111 (359)
+-|.|..+..++..- ..--.|+|==||||..-+..- -.-..++.+|+- ..-+ ..
T Consensus 181 ~~P~lAR~mVNLa~v--~~G~~vlDPFcGTGgiLiEag-----------------l~G~~viG~Did---~~mv----~g 234 (347)
T COG1041 181 MDPRLARAMVNLARV--KRGELVLDPFCGTGGILIEAG-----------------LMGARVIGSDID---ERMV----RG 234 (347)
T ss_pred cCHHHHHHHHHHhcc--ccCCEeecCcCCccHHHHhhh-----------------hcCceEeecchH---HHHH----hh
Confidence 556666666555321 223589999999997544221 123788888873 1111 00
Q ss_pred hHHHHHHhhCCCCCCeEEecccCCcccCCCCCCceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHH
Q 036911 112 FYEKLKEVKGSNFGPCFIAGIPGSFYGRLFPNKSLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFT 191 (359)
Q Consensus 112 ~~~~~~~~~~~~~~~~f~~~v~gsFy~~lfp~~S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~ 191 (359)
.+..++ ..+ ...+.+.-+ .+.-+..|+++++|-+.+ +.|=+...+ .++. .-.+=..
T Consensus 235 ak~Nl~-~y~--i~~~~~~~~-~Da~~lpl~~~~vdaIat--------DPPYGrst~-----~~~~-------~l~~Ly~ 290 (347)
T COG1041 235 AKINLE-YYG--IEDYPVLKV-LDATNLPLRDNSVDAIAT--------DPPYGRSTK-----IKGE-------GLDELYE 290 (347)
T ss_pred hhhhhh-hhC--cCceeEEEe-cccccCCCCCCccceEEe--------cCCCCcccc-----cccc-------cHHHHHH
Confidence 000010 111 123323322 266677799999999988 333222110 0000 0023366
Q ss_pred HHHHHHHHhhccCceEEEEEe
Q 036911 192 LFLTSRSEEILSGGHVLLSII 212 (359)
Q Consensus 192 ~fL~~Ra~EL~pGG~l~~~~~ 212 (359)
.||..-+.-|++||++++..+
T Consensus 291 ~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 291 EALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHHHHHHHhhcCcEEEEecC
Confidence 788888999999999999987
No 267
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=24.60 E-value=77 Score=30.92 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=26.1
Q ss_pred cccHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 187 GRDFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 187 ~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
...+..+|..-..-|+|||+|++..+-.-+
T Consensus 216 L~~L~~~L~~~~~~L~~gGrl~VISfHSLE 245 (305)
T TIGR00006 216 LEELEEALQFAPNLLAPGGRLSIISFHSLE 245 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCcHH
Confidence 678889999999999999999999986544
No 268
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=24.48 E-value=3.8e+02 Score=27.12 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=69.1
Q ss_pred cceEEeecCCCCcchHHHHHHHHHHHHHHhhhccCCCCcceEEecCCCCCchhhhhhcccchHHHHHHh---hCCCC-CC
Q 036911 51 CLKIADLGCSSGPNTLSLLWEIIDTIDGTCKRLNREAPMYQVFLNDLPGNDFNTIFKSLPGFYEKLKEV---KGSNF-GP 126 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp~NDFn~lF~~l~~~~~~~~~~---~~~~~-~~ 126 (359)
--+|||+=|=||..|+..+ .. | . -+|+..|+.. ......++. +|... +-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa--------~g----G---A-~~vt~VD~S~-----------~al~~a~~N~~LNg~~~~~~ 270 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAA--------LG----G---A-SEVTSVDLSK-----------RALEWARENAELNGLDGDRH 270 (393)
T ss_pred CCeEEEecccCcHHHHHHH--------hc----C---C-CceEEEeccH-----------HHHHHHHHHHHhcCCCccce
Confidence 4689999999999888665 11 1 1 4888889852 111111111 23211 23
Q ss_pred eEEecccCCcccCCCCCC-ceeEEEecccccccccCCCCccccCCCCCCCcceeecCCCCccccHHHHHHHHHHhhccCc
Q 036911 127 CFIAGIPGSFYGRLFPNK-SLHFVHSSYSLHWLSQVPEGLVSESGVPLNKGHICMAKTSPVGRDFTLFLTSRSEEILSGG 205 (359)
Q Consensus 127 ~f~~~v~gsFy~~lfp~~-S~d~~~S~~alhWls~~p~~~~~~~~~~~n~g~i~~~~~~~~~~d~~~fL~~Ra~EL~pGG 205 (359)
-|+.+-.-.|.+..-..+ .+|+|+- =|+.... ++... -...+|....+..--+-|+|||
T Consensus 271 ~~i~~Dvf~~l~~~~~~g~~fDlIil---------DPPsF~r------~k~~~-----~~~~rdy~~l~~~~~~iL~pgG 330 (393)
T COG1092 271 RFIVGDVFKWLRKAERRGEKFDLIIL---------DPPSFAR------SKKQE-----FSAQRDYKDLNDLALRLLAPGG 330 (393)
T ss_pred eeehhhHHHHHHHHHhcCCcccEEEE---------CCccccc------Ccccc-----hhHHHHHHHHHHHHHHHcCCCC
Confidence 455544444445555444 7888887 3443332 11110 1127888888988899999999
Q ss_pred eEEEEEecC
Q 036911 206 HVLLSIIGN 214 (359)
Q Consensus 206 ~l~~~~~g~ 214 (359)
.++++...+
T Consensus 331 ~l~~~s~~~ 339 (393)
T COG1092 331 TLVTSSCSR 339 (393)
T ss_pred EEEEEecCC
Confidence 999887543
No 269
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=24.35 E-value=5.2e+02 Score=28.17 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.4
Q ss_pred cceEEeecCCCCcchHHHH
Q 036911 51 CLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 51 ~~~IaDlGCs~G~nt~~l~ 69 (359)
...++|-+||||...+..+
T Consensus 191 ~~~l~DP~CGSGTilIEAa 209 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAA 209 (702)
T ss_pred CCeEEccCCCccHHHHHHH
Confidence 5789999999997766544
No 270
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=24.25 E-value=54 Score=20.50 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=14.2
Q ss_pred HHHHHHHhccchhhhhc
Q 036911 232 TLNDMVLEGLVEEAKVD 248 (359)
Q Consensus 232 al~~mv~eGli~~e~~d 248 (359)
.|.+|-..|.|+++++.
T Consensus 7 ~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 7 KLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHcCCCCHHHHH
Confidence 57788889999999865
No 271
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=23.69 E-value=81 Score=30.82 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHhhccCceEEEEEecCCC
Q 036911 187 GRDFTLFLTSRSEEILSGGHVLLSIIGNDR 216 (359)
Q Consensus 187 ~~d~~~fL~~Ra~EL~pGG~l~~~~~g~~~ 216 (359)
...+..+|.+--+-|+|||+|++..|-.-+
T Consensus 220 L~~L~~~L~~a~~~L~~gGRl~VIsFHSLE 249 (314)
T COG0275 220 LEELEEALEAALDLLKPGGRLAVISFHSLE 249 (314)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEecchH
Confidence 788999999999999999999999986654
No 272
>PHA03297 envelope glycoprotein L; Provisional
Probab=23.58 E-value=30 Score=30.12 Aligned_cols=50 Identities=18% Similarity=0.354 Sum_probs=32.8
Q ss_pred CCcceEEeecCCCCcchH------HHHHHHHHHHHHHhhhccCCCCcceEEecCCC
Q 036911 49 PECLKIADLGCSSGPNTL------SLLWEIIDTIDGTCKRLNREAPMYQVFLNDLP 98 (359)
Q Consensus 49 ~~~~~IaDlGCs~G~nt~------~l~~~ii~~i~~~~~~~~~~~p~~~v~~nDLp 98 (359)
..+-||++..||+|+.-- --++++...+....-+..+++||+-+.+.|-+
T Consensus 38 gepkrileascgsgpimkgqlytaP~V~NL~~~laGIvVK~~CsPPEaILW~~~~~ 93 (185)
T PHA03297 38 GEPKRILEASCGSGPIMKGQLFTSPNIKNLLNRTTGIMVKAHCNPPEAILWVDTPP 93 (185)
T ss_pred CCchhhhhhccCCCcccccccccCCCchhhhhhhceeEEecCCCCceeEEEecCCC
Confidence 358999999999998532 23344444433322223457899999999966
No 273
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=22.40 E-value=2.1e+02 Score=21.48 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=29.5
Q ss_pred cCCCCcchHHHHHHHHHHHHHHhh-hccCCCCcceEEecCCCCCc
Q 036911 58 GCSSGPNTLSLLWEIIDTIDGTCK-RLNREAPMYQVFLNDLPGND 101 (359)
Q Consensus 58 GCs~G~nt~~l~~~ii~~i~~~~~-~~~~~~p~~~v~~nDLp~ND 101 (359)
=|--|+.+...-+.+++.|.+... ..|.++..+.|+++|.+..|
T Consensus 7 k~~~g~~~~~~K~~la~~vT~~~~~~lg~~~~~i~Viieev~~~~ 51 (69)
T COG1942 7 KLFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVPPEN 51 (69)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEecChhh
Confidence 344477787766666666666533 25566667999999998543
No 274
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=21.61 E-value=52 Score=22.33 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=13.5
Q ss_pred cCccCCCHHHHHHHHh
Q 036911 252 LPYYAPSPEEVRHVIQ 267 (359)
Q Consensus 252 ~P~y~~s~~E~~~~i~ 267 (359)
+|.++||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 5889999999988764
No 275
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=20.40 E-value=1.5e+02 Score=27.46 Aligned_cols=39 Identities=23% Similarity=0.464 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhccchhhhhccCCcCccCCCHHHHHHHHhcCC
Q 036911 225 GWELLGVTLNDMVLEGLVEEAKVDWFNLPYYAPSPEEVRHVIQTEG 270 (359)
Q Consensus 225 ~~~~l~~al~~mv~eGli~~e~~d~f~~P~y~~s~~E~~~~i~~~G 270 (359)
-|+....|+..|..+|+.+.+++.+. +.+|+.++|...|
T Consensus 44 ~WknvekAlenLk~~~~~~l~~I~~~-------~~~~L~elIrpsG 82 (215)
T COG2231 44 SWKNVEKALENLKNEGILNLKKILKL-------DEEELAELIRPSG 82 (215)
T ss_pred cHHHHHHHHHHHHHcccCCHHHHhcC-------CHHHHHHHHhccc
Confidence 68999999999999999887766533 4677777777776
No 276
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=20.35 E-value=1.4e+02 Score=27.79 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=17.2
Q ss_pred CcceEEeecCCCCcchHHHH
Q 036911 50 ECLKIADLGCSSGPNTLSLL 69 (359)
Q Consensus 50 ~~~~IaDlGCs~G~nt~~l~ 69 (359)
.+.+++|+|.|.|-.|..+.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~ 131 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMA 131 (288)
T ss_pred CCeeEEeccCCCcchhhhhc
Confidence 47899999999999888664
Done!