BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036912
(445 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 168/434 (38%), Positives = 261/434 (60%), Gaps = 30/434 (6%)
Query: 33 SEPPTLLSNSAGKQSCCIFRLPQSFININGKSYQPHIVSIGPYHHGEAHVKIIEEHKWRY 92
S+ P LL SAGK+SCCIFR+P+SF+ +N K+Y+P +VSIGPYH+GE H+++I++HK R
Sbjct: 31 SKEPVLLLESAGKESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRL 90
Query: 93 LGSLLNRLKNTKSLGLEDFLKAVESLEIKARECFSETIHLGTDEFVELLVLDGLFIIELF 152
L L+ K K + +KAV LE K R+ +SE + G D + ++VLDG FI+ +F
Sbjct: 91 LQLFLDEAKK-KDVEENVLVKAVVDLEDKIRKSYSEELKTGHD-LMFMMVLDGCFILMVF 148
Query: 153 RKVSGLVKFDPDDPMITMSWILPFLYRDFLKLENQIPYFVLECLFDLSKLPGEESGPTLA 212
+SG ++ +DP+ ++ W+L + D L LENQ+P+FVL+ L+ SK+ G S L
Sbjct: 149 LIMSGNIELS-EDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKI-GVSS--DLN 204
Query: 213 TLALEFFNYAMQRPDEVVEKYKNHKARHLLDLVRSSLIP----SDQAE------------ 256
+A FF + + EK++N+KA+HLLDL+R + +P SD+A
Sbjct: 205 RIAFHFFKNPIDKEGSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGK 264
Query: 257 ----PKVKARTPTHVIHSISKLRRAGIK--LNAVKAESFLVVKFRHGAIEMPTITIDDFM 310
P V ++ +I S +LR GIK L K +S L V+ + +++P + D F+
Sbjct: 265 SGNVPSVDSKA-VPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFI 323
Query: 311 TSFLLNCVAYEQCQSGCSKHITTYATLIDYLVNTARDVEYL-CDGNIIENNLGTDAEVAL 369
+SF LNCVA+EQ + S ITTY + L+N DV +L D IIEN+ G++ EV+
Sbjct: 324 SSFFLNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSE 383
Query: 370 FINNLGKDVAFDMDLCYLSKLFNDVHDYYSSSRHVQWAAFKYKYFDSPWSFISALAALIL 429
F + KDV F++D YL+ +F V++Y + WA F++ +F+SPW+F+S+ A L +
Sbjct: 384 FFKTISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFV 443
Query: 430 LLLTVAQTVFTVYS 443
+LLT+ Q+ + S
Sbjct: 444 ILLTMLQSTVAILS 457
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 26/216 (12%)
Query: 47 SCCIFRLPQSFININGKSYQPHIVSIGPYHHGEAHVKIIEEHKWRYLGSLLNRLKNT-KS 105
+ IF +P++ + + SY PH VSIGPYH + + +E RY + +++N S
Sbjct: 42 TVSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEME----RYKLMIARKIRNQYNS 97
Query: 106 LGLEDFLKAVESLEIKARECFSETIHLGTDEFVELLVLDGLFIIEL-----FRKVSGLVK 160
D ++ ++S+EIK R C+ + I + + ++ +D F+IE FRKV L+
Sbjct: 98 FRFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLIN 157
Query: 161 FDPDDPMITMSWILPFLYRDFLKLENQIPYFVLECLFDLSKLPGEESG-----PTLATLA 215
+ ++ RD + +ENQIP FVL + +L ES L L
Sbjct: 158 RVGHNEIL----------RDIMMIENQIPLFVLRKTLEF-QLESTESADDLLLSVLTGLC 206
Query: 216 LEFFNYAMQRPDEVVEKYKNHKARHLLDLVRSSLIP 251
+ ++ D+ + K + + H+LD + ++P
Sbjct: 207 KDLSPLVIKFDDDQILKAQFQECNHILDFLYQMIVP 242
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 3/154 (1%)
Query: 268 IHSISKLRRAGIKLNAVKAESFLVVKF--RHGAIEMPTITIDDFMTSFLLNCVAYEQCQS 325
I S+S L +AG++ + V F G +P I +D + L N VAYE +
Sbjct: 345 IPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNT 404
Query: 326 GCSKHITTYATLIDYLVNTARDVEYLCDGNIIENNLGTDAEVALFINNLGKDVAFDMDLC 385
T Y LI+ ++++ DV L + ++ + L +D E A N + K V +
Sbjct: 405 SGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRL-TKVG 463
Query: 386 YLSKLFNDVHDYYSSSRHVQWAAFKYKYFDSPWS 419
+L K DV+ YY+ V+ Y W
Sbjct: 464 FLDKTIEDVNRYYTGRWKVKIGRLVEVYVYGSWQ 497
>sp|C3LN54|AROA_VIBCM 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=aroA PE=3 SV=1
Length = 426
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 255 AEPKVKARTPTHVIHSISKLRRAGIKLNAVKAESFLVVKFRHGAIEMPTITID-----DF 309
EP++K R H++ + LR+AG ++ ++ E+F ++ + ++ T+TID F
Sbjct: 117 GEPRMKERPIGHLVDA---LRQAGAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISSQF 173
Query: 310 MTSFLLNC 317
+T+FL++
Sbjct: 174 LTAFLMSA 181
>sp|Q9KRB0|AROA_VIBCH 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=aroA PE=1 SV=1
Length = 426
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 255 AEPKVKARTPTHVIHSISKLRRAGIKLNAVKAESFLVVKFRHGAIEMPTITID-----DF 309
EP++K R H++ + LR+AG ++ ++ E+F ++ + ++ T+TID F
Sbjct: 117 GEPRMKERPIGHLVDA---LRQAGAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISSQF 173
Query: 310 MTSFLLNC 317
+T+FL++
Sbjct: 174 LTAFLMSA 181
>sp|Q6DAR6|CAPP_ERWCT Phosphoenolpyruvate carboxylase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=ppc
PE=3 SV=1
Length = 879
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Query: 1 MGSTSVEAEAN---DHVISIWEVKKDRLESMNKRISEPPTLLSNSAGKQSCCIFRLPQSF 57
+G T EA D V +I ++ K K E T L N + + + R F
Sbjct: 19 LGDTIKEALGENILDKVETIRKLSKSSRAGNEKHRQELLTTLQNLSNDELLPVARAFSQF 78
Query: 58 ININGKSYQPHIVSIGPYHHGEAHVKIIEEHKWRYLGSLLNRLKNTKSLGLEDFLKAVES 117
+N+ + Q H +S HGEA + L S RLK +K L D AVES
Sbjct: 79 LNLTNTAEQYHTIS----PHGEAASNPAQ------LSSAFKRLKESKDLSERDIRDAVES 128
Query: 118 LEIK 121
L I+
Sbjct: 129 LSIE 132
>sp|C6DI86|CAPP_PECCP Phosphoenolpyruvate carboxylase OS=Pectobacterium carotovorum
subsp. carotovorum (strain PC1) GN=ppc PE=3 SV=1
Length = 879
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 13/124 (10%)
Query: 1 MGSTSVEAEAN---DHVISIWEVKKDRLESMNKRISEPPTLLSNSAGKQSCCIFRLPQSF 57
+G T EA D V +I ++ K K E T L N + + + R F
Sbjct: 19 LGDTIKEALGENILDKVETIRKLSKSSRAGNEKHRQELLTTLQNLSNDELLPVARAFSQF 78
Query: 58 ININGKSYQPHIVSIGPYHHGEAHVKIIEEHKWRYLGSLLNRLKNTKSLGLEDFLKAVES 117
+N+ + Q H +S HGEA + L S RLK +K L D AVES
Sbjct: 79 LNLTNTAEQYHTIS----PHGEAASNPAQ------LSSAFERLKESKDLTERDIRDAVES 128
Query: 118 LEIK 121
L I+
Sbjct: 129 LSIE 132
>sp|P34466|CLU_CAEEL Clustered mitochondria protein homolog OS=Caenorhabditis elegans
GN=clu-1 PE=2 SV=1
Length = 1247
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 282 NAVKAESFLVVKFRHGAIEMP-TITIDDFMTSFLLN-----CVAYEQCQSGCSKHI---- 331
N +K + ++ R + P + +D M L + +E + S+ +
Sbjct: 320 NPLKTDGYMSDSLRAIELTEPFRVGFEDHMPGLLRDWNEELQTTFEMTRKSISERVIRDR 379
Query: 332 TTYATLIDYLVNTARDVEYLCDGNIIENNLGTDAEVALFI-NNLGKDVAFDMDLCYLSKL 390
+ Y DY+ AR V+ + DGNI+ N G D + ++I NN+ + FD+ Y +L
Sbjct: 380 SYYKIHADYVNAAARGVQSILDGNILAINPGEDKKTHMYIWNNIFFSLGFDVRDHY-KEL 438
Query: 391 FNDVHDYYSSSRHVQ 405
D + ++S +Q
Sbjct: 439 GGDAAAFAATSTDLQ 453
>sp|A5F7G5|AROA_VIBC3 3-phosphoshikimate 1-carboxyvinyltransferase OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=aroA PE=3 SV=1
Length = 426
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 255 AEPKVKARTPTHVIHSISKLRRAGIKLNAVKAESFLVVKFRHGAIEMPTITID-----DF 309
EP++K R H++ + LR+A ++ ++ E+F ++ + ++ T+TID F
Sbjct: 117 GEPRMKERPIGHLVDA---LRQASAQIEYLEQENFPPLRIQGTGLQAGTVTIDGSISSQF 173
Query: 310 MTSFLLNC 317
+T+FL++
Sbjct: 174 LTAFLMSA 181
>sp|Q6BSY1|MAD1_DEBHA Spindle assembly checkpoint component MAD1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=MAD1 PE=3 SV=2
Length = 669
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 59 NINGKSYQPHIVSIGPYHHGEAHVKIIEEHKWRYLGSLLNRLKNTKSLGLEDFLKAVESL 118
N+ S +P I+ G + ++ V ++E+ + L ++ N N K+LG + L+ +ESL
Sbjct: 422 NVQSGSKRPRIIDNGIQNDFKSQVSVLEKENLKLLSTIKNLEYNNKTLG--EKLQNLESL 479
Query: 119 EIKARE 124
+ K +E
Sbjct: 480 DNKKKE 485
>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis
thaliana GN=At1g61190 PE=3 SV=1
Length = 967
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 15/166 (9%)
Query: 173 ILPFLYRDFLKLENQIPYFVLECLFDLSKLPGEESGPTLATLALEFFNYAMQRPDEVVEK 232
ILP L + LE++ + C + P ++ T TL ++ D+V+++
Sbjct: 389 ILPILKYSYDSLEDE---HIKSCFLYCALFPEDDKIDT-KTLINKWICEGFIGEDQVIKR 444
Query: 233 YKNHKARHLLDLVRSSLIPSDQAEPKVKARTPTHVIHSISKLRRAGIKLNAVKAESFLVV 292
+N L L+R++L+ +D+ K V+H + + I + K + VV
Sbjct: 445 ARNKGYEMLGTLIRANLLTNDRGFVKWHV-----VMHDVVREMALWIASDFGKQKENYVV 499
Query: 293 KFRHGAIEMPTITIDDF----MTSFLLNCVAYEQCQSGCSKHITTY 334
+ R G E+P + D+ S ++N + C+S CS+ T +
Sbjct: 500 RARVGLHEIPKVK--DWGAVRRMSLMMNEIEEITCESKCSELTTLF 543
>sp|A8XAA9|CLU_CAEBR Clustered mitochondria protein homolog OS=Caenorhabditis briggsae
GN=clu-1 PE=3 SV=2
Length = 1262
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 334 YATLIDYLVNTARDVEYLCDGNIIENNLGTDAEVALFI-NNLGKDVAFDMDLCYLSKLFN 392
Y DY+ A+ V+ + DGNI+ N G D + ++I NN+ + FD+ Y +L
Sbjct: 383 YKIHADYVNAAAKGVQSILDGNILAINPGEDKKTHMYIWNNIFFSLGFDVRDHY-KELGG 441
Query: 393 DVHDYYSSSRHVQ 405
D + ++S +Q
Sbjct: 442 DAAAFAATSTDLQ 454
>sp|Q8RE57|SYM_FUSNN Methionine--tRNA ligase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=metG PE=3 SV=1
Length = 636
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 112 LKAVESLEIKARECFSETIHLGTDEFVELLVLDGLFIIELFRKVSGLVKFDPDDPMITMS 171
+K +EIK E G D+ ++ V DG F ++ +SGL KF PD +
Sbjct: 533 IKEFNKIEIKVVEILDVDKVEGADKLLKFKVFDGEFERQI---ISGLAKFYPDFKKLISE 589
Query: 172 WILPFLYRDFLKLENQIPYFVL 193
+L + F KL+ +I +L
Sbjct: 590 KVLAVVNLKFTKLKGEISQGML 611
>sp|Q9QZX8|SO1B2_RAT Solute carrier organic anion transporter family member 1B2
OS=Rattus norvegicus GN=Slco1b2 PE=1 SV=2
Length = 687
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 83 KIIEEHKWRY--LGSLLNRLKNTKSLGLEDFLKAVESLEIKARECFSETIHLGTDEFVEL 140
K ++ H W Y +G++L + T + L + L+ A+E + ++HLGT + +
Sbjct: 161 KGLKSHMWIYVLMGNMLRGIGETPIVPL-----GISYLDDFAKEGHT-SMHLGTLHTIAM 214
Query: 141 L-VLDGLFIIELFRKVS--------GLVKFDPDDPMITMSWILPFLYRDFLKLENQIPYF 191
+ + G + +F K+ V+ P+D +W L F+ L + + IP+F
Sbjct: 215 IGPILGFIMSSVFAKIYVDVGYVDLNSVRITPNDARWVGAWWLSFIVNGLLCITSSIPFF 274
Query: 192 VL 193
L
Sbjct: 275 FL 276
>sp|Q6MUG2|SYK_MYCMS Lysine--tRNA ligase OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=lysS PE=3 SV=1
Length = 500
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 121 KARECFSETIHLGTDEFVELLVLDGLFIIELFRKVSGLVKFDPDDPMITMSWILPFLYRD 180
K +E I+L +EFVE +++ F+ +++S L K +P DP T + L L R+
Sbjct: 358 KHQESVGHIINLFYEEFVESTIVEPTFVYGHPKEISPLAKSNPSDPRFTDRFELFILGRE 417
Query: 181 F 181
+
Sbjct: 418 Y 418
>sp|Q74J34|CARB_LACJO Carbamoyl-phosphate synthase large chain OS=Lactobacillus johnsonii
(strain CNCM I-12250 / La1 / NCC 533) GN=carB PE=3 SV=1
Length = 1062
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 109 EDFLKAVESLEIKARECFSETIHLGTDEFVELLVL----DGLF-IIELFRK 154
E KAV SLEI ++ +SET H +DE +E ++ D LF + E FR+
Sbjct: 391 EAMQKAVRSLEIDEKDLYSETAHHASDEEIEQKLVKAQDDRLFYLAEAFRR 441
>sp|Q2SR35|SYK_MYCCT Lysine--tRNA ligase OS=Mycoplasma capricolum subsp. capricolum
(strain California kid / ATCC 27343 / NCTC 10154)
GN=lysS PE=3 SV=1
Length = 500
Score = 32.7 bits (73), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 121 KARECFSETIHLGTDEFVELLVLDGLFIIELFRKVSGLVKFDPDDPMITMSWILPFLYRD 180
K +E I+L +EFVE +++ F+ +++S L K +P+DP T + L + R+
Sbjct: 358 KHQESVGHIINLFYEEFVESTIVEPTFVYGHPKEISPLAKSNPNDPRFTDRFELFIIGRE 417
Query: 181 F 181
+
Sbjct: 418 Y 418
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,344,440
Number of Sequences: 539616
Number of extensions: 6735679
Number of successful extensions: 16237
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 16214
Number of HSP's gapped (non-prelim): 30
length of query: 445
length of database: 191,569,459
effective HSP length: 121
effective length of query: 324
effective length of database: 126,275,923
effective search space: 40913399052
effective search space used: 40913399052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)