Query 036912
Match_columns 445
No_of_seqs 132 out of 668
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 4E-110 9E-115 860.8 34.3 379 50-433 1-391 (391)
2 PRK10404 hypothetical protein; 78.7 4.9 0.00011 33.9 5.3 66 363-435 32-97 (101)
3 COG4575 ElaB Uncharacterized c 64.5 5.8 0.00013 33.5 2.5 20 415-435 81-100 (104)
4 PF14770 TMEM18: Transmembrane 56.2 13 0.00029 32.5 3.4 48 392-442 56-103 (123)
5 PF12911 OppC_N: N-terminal TM 55.5 15 0.00033 26.8 3.3 33 410-442 9-41 (56)
6 PRK10132 hypothetical protein; 53.0 13 0.00029 31.7 2.9 20 415-435 84-103 (108)
7 PF07438 DUF1514: Protein of u 51.0 17 0.00037 28.0 2.8 22 418-439 2-23 (66)
8 PF09069 EF-hand_3: EF-hand; 46.9 24 0.00052 29.2 3.4 58 87-144 2-76 (90)
9 PF14579 HHH_6: Helix-hairpin- 43.7 1.3E+02 0.0029 24.3 7.4 83 278-365 1-87 (90)
10 PF05957 DUF883: Bacterial pro 41.9 26 0.00057 28.7 2.9 20 415-435 71-90 (94)
11 PF04971 Lysis_S: Lysis protei 40.7 44 0.00096 26.1 3.7 35 404-438 19-53 (68)
12 PHA02103 hypothetical protein 40.0 56 0.0012 27.8 4.5 76 281-359 11-103 (135)
13 PF05421 DUF751: Protein of un 35.6 65 0.0014 24.7 3.9 32 412-443 29-60 (61)
14 KOG3110 Riboflavin kinase [Coe 33.2 35 0.00076 30.3 2.4 63 65-127 65-138 (153)
15 PF04531 Phage_holin_1: Bacter 28.9 54 0.0012 26.6 2.7 23 414-436 8-30 (84)
16 PHA02680 ORF090 IMV phosphoryl 27.6 99 0.0022 25.4 3.9 30 415-444 42-71 (91)
17 PF00690 Cation_ATPase_N: Cati 27.3 1.7E+02 0.0038 22.1 5.3 59 362-428 4-68 (69)
18 PF09820 AAA-ATPase_like: Pred 26.9 64 0.0014 32.0 3.5 60 360-424 222-282 (284)
19 PF15103 G0-G1_switch_2: G0/G1 26.7 62 0.0013 27.3 2.7 24 420-443 28-51 (102)
20 KOG4134 DNA-dependent RNA poly 25.9 54 0.0012 31.6 2.5 45 44-99 21-65 (253)
21 PF10961 DUF2763: Protein of u 24.8 89 0.0019 25.8 3.3 27 415-441 13-42 (91)
22 TIGR01598 holin_phiLC3 holin, 20.6 1.4E+02 0.0031 24.0 3.6 19 412-430 5-23 (78)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=4.3e-110 Score=860.84 Aligned_cols=379 Identities=44% Similarity=0.761 Sum_probs=340.2
Q ss_pred eeecCccccccCCCCCcccEEEeCcccCCCchhchHHHHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccccc
Q 036912 50 IFRLPQSFININGKSYQPHIVSIGPYHHGEAHVKIIEEHKWRYLGSLLNRLKNTKSLGLEDFLKAVESLEIKARECFSET 129 (445)
Q Consensus 50 I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~l~~~l~r~~~~~~~~l~~~~~~i~~~e~~aR~~Y~~~ 129 (445)
|||||+++|++|++||+|++|||||||||+++|+.||++|++|++.|++|.+ ..+.++++++++|+++|++||+||+++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~-~~~~~l~~~~~~i~~~e~~~R~~Y~~~ 79 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSG-APAESLEDYVEAIRSLEEEARACYAED 79 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999942 123899999999999999999999999
Q ss_pred CC-CChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-cCccccchhHHHhHHhhhccCcchHHHHHHhhccCCCCCCC
Q 036912 130 IH-LGTDEFVELLVLDGLFIIELFRKVSGLVKFDPDDP-MITMSWILPFLYRDFLKLENQIPYFVLECLFDLSKLPGEES 207 (445)
Q Consensus 130 ~~-~~~~ef~~MlllDGCFILe~~~~~~~~~~~~~~d~-~~~~~~~~~~i~~DllLLENQIPffVLe~L~~~~~~~~~~~ 207 (445)
+. +++++|++||++|||||||+|+++.. ..+.+|| ++..+|....|++||+|||||||||||++||++........
T Consensus 80 ~~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~~~~ 157 (391)
T PF03140_consen 80 IDDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSKSDV 157 (391)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcccccCc
Confidence 98 99999999999999999999999875 2345788 89999999999999999999999999999999998554467
Q ss_pred chhHHHHHHHHcccccC-CCchhhhhccCCCCCChHHHHHHhcCCCCCCC---CCCCC-----CCCcccccCHHHHHHhC
Q 036912 208 GPTLATLALEFFNYAMQ-RPDEVVEKYKNHKARHLLDLVRSSLIPSDQAE---PKVKA-----RTPTHVIHSISKLRRAG 278 (445)
Q Consensus 208 ~~~l~~l~~~~f~~~~~-~~~~~~~~~~~~~~~HLLdL~~~~~~p~~~~~---~~~~~-----~~~~~~~~sAteL~~aG 278 (445)
..++.+++.+||..... .... ......+++|||||+|++++|++... +..+. ..+...|||||||++||
T Consensus 158 ~~~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~eL~~aG 235 (391)
T PF03140_consen 158 DESLIDLVLKFFYKHWPSWPPD--EPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATELREAG 235 (391)
T ss_pred cchHHHHHHhHhcccccccccc--ccccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHHHHhCC
Confidence 89999999999942111 1111 12455679999999999999932211 11111 11226899999999999
Q ss_pred cEEeecCCC-ceeeeEEeccEEEeccEEecCcchhhhhhHHHHhhhcCCCCcchhhHHHHHHHhhCChhhHHHHhhCCcc
Q 036912 279 IKLNAVKAE-SFLVVKFRHGAIEMPTITIDDFMTSFLLNCVAYEQCQSGCSKHITTYATLIDYLVNTARDVEYLCDGNII 357 (445)
Q Consensus 279 V~Fk~~~~~-~llDI~F~~G~L~IP~L~id~~T~~llrNLiA~Eq~~~~~~~~vTsYv~fM~~Li~t~~DV~lL~~~GIi 357 (445)
|+||++++. +++||+|++|+|+||+|.||++|+++||||||||||++..+.+|||||.||++||+|++||++|+++|||
T Consensus 236 V~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~~kgIi 315 (391)
T PF03140_consen 236 VKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLRRKGII 315 (391)
T ss_pred cEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHHhCCeE
Confidence 999999876 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHhccCcccCCCcccHHHHHHHHHHHhcCchHHHHHHhccccccchHHHHHHHHHHHHHHHH
Q 036912 358 ENNLGTDAEVALFINNLGKDVAFDMDLCYLSKLFNDVHDYYSSSRHVQWAAFKYKYFDSPWSFISALAALILLLLT 433 (445)
Q Consensus 358 ~~~lgsdeeva~lF~~L~~~~~~~~~~~y~~~v~~~l~~y~~~rw~~w~a~l~~~yf~nPW~~~s~~aA~ill~lT 433 (445)
+|++|+||||++|||+||+++.++.+++||.+++++||+||++||++|+|+++|+||+|||+++|++||+++|+||
T Consensus 316 ~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~lT 391 (391)
T PF03140_consen 316 VNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLLT 391 (391)
T ss_pred ecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987789999999999999999999999999999999999999999999999997
No 2
>PRK10404 hypothetical protein; Provisional
Probab=78.67 E-value=4.9 Score=33.92 Aligned_cols=66 Identities=15% Similarity=0.065 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHhccCcccCCCcccHHHHHHHHHHHhcCchHHHHHHhccccccchHHHHHHHHHHHHHHHHHH
Q 036912 363 TDAEVALFINNLGKDVAFDMDLCYLSKLFNDVHDYYSSSRHVQWAAFKYKYFDSPWSFISALAALILLLLTVA 435 (445)
Q Consensus 363 sdeeva~lF~~L~~~~~~~~~~~y~~~v~~~l~~y~~~rw~~w~a~l~~~yf~nPW~~~s~~aA~ill~lT~l 435 (445)
+.+++.++-.++...+.- -...+.+.-+.+.+.. +..-..-...+| .|||..+++.|+ ++|++.++
T Consensus 32 a~e~~~~lR~r~~~~L~~--ar~~l~~~~~~~~~~~-k~aa~~td~yV~---e~Pw~avGiaag-vGlllG~L 97 (101)
T PRK10404 32 ADQKYVELKARAEKALDD--VKKRVSQASDSYYYRA-KQAVYRADDYVH---EKPWQGIGVGAA-VGLVLGLL 97 (101)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHH-HHHHHHHHHHHH---hCcHHHHHHHHH-HHHHHHHH
Confidence 455666666666554321 1112333222222211 112222234455 499999997555 78877765
No 3
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=64.45 E-value=5.8 Score=33.52 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 036912 415 DSPWSFISALAALILLLLTVA 435 (445)
Q Consensus 415 ~nPW~~~s~~aA~ill~lT~l 435 (445)
.|||..|++-|| +.|++.++
T Consensus 81 e~PWq~VGvaAa-VGlllGlL 100 (104)
T COG4575 81 ENPWQGVGVAAA-VGLLLGLL 100 (104)
T ss_pred cCCchHHHHHHH-HHHHHHHH
Confidence 699999998776 66666654
No 4
>PF14770 TMEM18: Transmembrane protein 18
Probab=56.22 E-value=13 Score=32.48 Aligned_cols=48 Identities=29% Similarity=0.346 Sum_probs=37.0
Q ss_pred HHHHHHhcCchHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036912 392 NDVHDYYSSSRHVQWAAFKYKYFDSPWSFISALAALILLLLTVAQTVFTVY 442 (445)
Q Consensus 392 ~~l~~y~~~rw~~w~a~l~~~yf~nPW~~~s~~aA~ill~lT~lQTv~sv~ 442 (445)
+.+|+|..+.|+ .--+++||++-=.++|++-++=+|+.+++..+..++
T Consensus 56 E~iN~~~a~nW~---~Fs~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l~ 103 (123)
T PF14770_consen 56 EYINEYAARNWR---SFSKQNYFDSSGVFISVVFSAPLLLNCLIILVNWLY 103 (123)
T ss_pred HHHHHHHHHHHH---HHhhccCcCCCCeeehHHHHHhHHHHHHHHHHHHHH
Confidence 689999988874 333469999999999999887777777776665543
No 5
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=55.45 E-value=15 Score=26.80 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=26.3
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036912 410 KYKYFDSPWSFISALAALILLLLTVAQTVFTVY 442 (445)
Q Consensus 410 ~~~yf~nPW~~~s~~aA~ill~lT~lQTv~sv~ 442 (445)
.+.+++|+...+|++.-+++++++++.-+++-+
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 457778999999999888888888887766544
No 6
>PRK10132 hypothetical protein; Provisional
Probab=53.05 E-value=13 Score=31.69 Aligned_cols=20 Identities=20% Similarity=0.557 Sum_probs=15.8
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 036912 415 DSPWSFISALAALILLLLTVA 435 (445)
Q Consensus 415 ~nPW~~~s~~aA~ill~lT~l 435 (445)
.|||..+++.|+ ++|++.++
T Consensus 84 ~~Pw~svgiaag-vG~llG~L 103 (108)
T PRK10132 84 ERPWCSVGTAAA-VGIFIGAL 103 (108)
T ss_pred hCcHHHHHHHHH-HHHHHHHH
Confidence 699999997655 77777765
No 7
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=51.04 E-value=17 Score=27.97 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036912 418 WSFISALAALILLLLTVAQTVF 439 (445)
Q Consensus 418 W~~~s~~aA~ill~lT~lQTv~ 439 (445)
|.++|.+.|+++|++-..|+-.
T Consensus 2 WIiiSIvLai~lLI~l~~ns~l 23 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSEL 23 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999998888743
No 8
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=46.89 E-value=24 Score=29.17 Aligned_cols=58 Identities=28% Similarity=0.481 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhhhc-cCCCcHHHHHHHHH-------------HHHHHHHhcccc---cCCCChHHHHHHHHHH
Q 036912 87 EHKWRYLGSLLNRLKN-TKSLGLEDFLKAVE-------------SLEIKARECFSE---TIHLGTDEFVELLVLD 144 (445)
Q Consensus 87 ~~K~~~l~~~l~r~~~-~~~~~l~~~~~~i~-------------~~e~~aR~~Y~~---~~~~~~~ef~~MlllD 144 (445)
+.|.||+=.++....+ .+...++.++..+. ..|..+|.|+.. .-+++.++|++.|..|
T Consensus 2 ~dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 3589999999877321 11124555555542 268889999976 5568999999988765
No 9
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=43.66 E-value=1.3e+02 Score=24.26 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=57.0
Q ss_pred CcEEeecC-CCceeeeEEec--cEEEeccEEecCcchhhhhhHHHHhhhcCCCCcchhhHHHHHHHh-hCChhhHHHHhh
Q 036912 278 GIKLNAVK-AESFLVVKFRH--GAIEMPTITIDDFMTSFLLNCVAYEQCQSGCSKHITTYATLIDYL-VNTARDVEYLCD 353 (445)
Q Consensus 278 GV~Fk~~~-~~~llDI~F~~--G~L~IP~L~id~~T~~llrNLiA~Eq~~~~~~~~vTsYv~fM~~L-i~t~~DV~lL~~ 353 (445)
||++.+.+ ..+-.+-+..+ +.+.+|=-.|..-.+.....+++-=+ ...++|+--|...+ --+..+++.|.+
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~-----~g~f~s~~df~~R~~~i~~~~le~Li~ 75 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE-----NGPFKSLEDFIQRLPKINKRQLEALIK 75 (90)
T ss_dssp T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH-----CSS-SSHHHHHHHS-TS-HHHHHHHHH
T ss_pred CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh-----cCCCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 77777754 33445566666 79999999999999988887776555 34478899999988 778999999999
Q ss_pred CCccccCCCChH
Q 036912 354 GNIIENNLGTDA 365 (445)
Q Consensus 354 ~GIi~~~lgsde 365 (445)
.|.+...-+++.
T Consensus 76 aGafd~~~~~~R 87 (90)
T PF14579_consen 76 AGAFDSFGKSRR 87 (90)
T ss_dssp TTTTTTCSSCHH
T ss_pred CCCccccChhhh
Confidence 999987655443
No 10
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=41.93 E-value=26 Score=28.67 Aligned_cols=20 Identities=25% Similarity=0.590 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 036912 415 DSPWSFISALAALILLLLTVA 435 (445)
Q Consensus 415 ~nPW~~~s~~aA~ill~lT~l 435 (445)
.|||..+++.++ ++|++.++
T Consensus 71 e~P~~svgiAag-vG~llG~L 90 (94)
T PF05957_consen 71 ENPWQSVGIAAG-VGFLLGLL 90 (94)
T ss_pred HChHHHHHHHHH-HHHHHHHH
Confidence 799999998777 66666554
No 11
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=40.66 E-value=44 Score=26.13 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=27.0
Q ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHHHHHHH
Q 036912 404 VQWAAFKYKYFDSPWSFISALAALILLLLTVAQTV 438 (445)
Q Consensus 404 ~w~a~l~~~yf~nPW~~~s~~aA~ill~lT~lQTv 438 (445)
.|...+...+-+.-|.+|++++.+++-++|.+--+
T Consensus 19 ~wl~~lld~~sp~qW~aIGvi~gi~~~~lt~ltN~ 53 (68)
T PF04971_consen 19 YWLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLTNL 53 (68)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHHHhHh
Confidence 35666666777888999999999998888876433
No 12
>PHA02103 hypothetical protein
Probab=40.01 E-value=56 Score=27.81 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=50.4
Q ss_pred EeecCCCceeeeE--E----eccE--EEeccEEecCcchhhhhhHHHHhhhcCCC-----C----cchhhHHHHHHHhhC
Q 036912 281 LNAVKAESFLVVK--F----RHGA--IEMPTITIDDFMTSFLLNCVAYEQCQSGC-----S----KHITTYATLIDYLVN 343 (445)
Q Consensus 281 Fk~~~~~~llDI~--F----~~G~--L~IP~L~id~~T~~llrNLiA~Eq~~~~~-----~----~~vTsYv~fM~~Li~ 343 (445)
||+++.++.+-|+ | ++.+ -+||.+..|+...-+-|=.+-+|.|...- + .++-.|-.. .-.
T Consensus 11 fk~kd~rn~f~v~~~fsdkf~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyry---f~e 87 (135)
T PHA02103 11 FKPKDDRNTFMVKMHFSDKFSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRY---FGE 87 (135)
T ss_pred cCCccCcceEEEEEecccccCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHH---hcc
Confidence 3344445544433 4 3444 68999999999999999999999997531 1 245555543 335
Q ss_pred ChhhHHHHhhCCcccc
Q 036912 344 TARDVEYLCDGNIIEN 359 (445)
Q Consensus 344 t~~DV~lL~~~GIi~~ 359 (445)
.+|-|++-.+-||=.-
T Consensus 88 e~e~ie~we~ygve~l 103 (135)
T PHA02103 88 EAEGVELWEEYGVEGL 103 (135)
T ss_pred cchhhhHHHHhCccee
Confidence 6677888777777543
No 13
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=35.59 E-value=65 Score=24.66 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=26.9
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036912 412 KYFDSPWSFISALAALILLLLTVAQTVFTVYS 443 (445)
Q Consensus 412 ~yf~nPW~~~s~~aA~ill~lT~lQTv~sv~~ 443 (445)
.-++||-++++++++++..+..+.+|+=+++.
T Consensus 29 ~llk~p~tai~~i~~~~~~~~~l~~tL~aMlg 60 (61)
T PF05421_consen 29 PLLKNPVTAIALIGILIGGFIFLYFTLRAMLG 60 (61)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33579999999999999999999999877753
No 14
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=33.22 E-value=35 Score=30.31 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=43.3
Q ss_pred CcccEEEeC--cccCCCc---hhchHHHHHHHHHHHHHhhhh------ccCCCcHHHHHHHHHHHHHHHHhccc
Q 036912 65 YQPHIVSIG--PYHHGEA---HVKIIEEHKWRYLGSLLNRLK------NTKSLGLEDFLKAVESLEIKARECFS 127 (445)
Q Consensus 65 Y~P~~VSIG--PyHhg~~---~L~~mE~~K~~~l~~~l~r~~------~~~~~~l~~~~~~i~~~e~~aR~~Y~ 127 (445)
--|+++||| ||...+. .+..+++.|--+-.+.++-.- ..+=.++++++++|..-.+.|++.-+
T Consensus 65 v~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred ceeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 468999999 8888754 355566666666666554311 01224799999999998888887654
No 15
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.86 E-value=54 Score=26.58 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=15.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 036912 414 FDSPWSFISALAALILLLLTVAQ 436 (445)
Q Consensus 414 f~nPW~~~s~~aA~ill~lT~lQ 436 (445)
|.||-..+++++|+++++.++..
T Consensus 8 ~kN~~~w~ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 8 FKNKAFWVALISAILLLVQQVGG 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Confidence 56887788888777766655544
No 16
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=27.64 E-value=99 Score=25.38 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=23.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036912 415 DSPWSFISALAALILLLLTVAQTVFTVYSA 444 (445)
Q Consensus 415 ~nPW~~~s~~aA~ill~lT~lQTv~sv~~y 444 (445)
..+|.++|.++-++..++++==-+||.+.|
T Consensus 42 ~~~wRalSii~FIlG~vl~lGilifs~y~~ 71 (91)
T PHA02680 42 DYVWRALSVTCFIVGAVLLLGLFVFSMYRK 71 (91)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468999998888887777777778888763
No 17
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=27.35 E-value=1.7e+02 Score=22.08 Aligned_cols=59 Identities=19% Similarity=0.332 Sum_probs=30.7
Q ss_pred CChHHHHHHHH-HhccCcccCCCcccHHHHHHHHHHHhcC-----chHHHHHHhccccccchHHHHHHHHHHH
Q 036912 362 GTDAEVALFIN-NLGKDVAFDMDLCYLSKLFNDVHDYYSS-----SRHVQWAAFKYKYFDSPWSFISALAALI 428 (445)
Q Consensus 362 gsdeeva~lF~-~L~~~~~~~~~~~y~~~v~~~l~~y~~~-----rw~~w~a~l~~~yf~nPW~~~s~~aA~i 428 (445)
.+-+++.+.|+ +...|+. + ..+-+....|=.+ +-..|+..+. +.|.||+.++=++||++
T Consensus 4 ~~~~~v~~~l~t~~~~GLs----~---~ev~~r~~~~G~N~l~~~~~~s~~~~~~-~~f~~~~~~lL~~aail 68 (69)
T PF00690_consen 4 LSVEEVLKRLNTSSSQGLS----S---EEVEERRKKYGPNELPEPKKKSLWRIFL-KQFKNPFIILLLIAAIL 68 (69)
T ss_dssp SSHHHHHHHHTTBTSSBBT----H---HHHHHHHHHHSSSSTTTTTSSSHHHHHH-HHTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCCCCCCC----H---HHHHHHHHhcccccccccccCcHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 34566766665 4444432 1 3344445555111 1222333333 44689988887777764
No 18
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=26.87 E-value=64 Score=32.02 Aligned_cols=60 Identities=18% Similarity=0.366 Sum_probs=41.6
Q ss_pred CCC-ChHHHHHHHHHhccCcccCCCcccHHHHHHHHHHHhcCchHHHHHHhccccccchHHHHHHH
Q 036912 360 NLG-TDAEVALFINNLGKDVAFDMDLCYLSKLFNDVHDYYSSSRHVQWAAFKYKYFDSPWSFISAL 424 (445)
Q Consensus 360 ~lg-sdeeva~lF~~L~~~~~~~~~~~y~~~v~~~l~~y~~~rw~~w~a~l~~~yf~nPW~~~s~~ 424 (445)
.+| +++||.++|+...+...... . .....++|.++|+.-.-.+.+. ..-..|||.++..+
T Consensus 222 ~~GFT~~Ev~~ll~~~~~~~~~~~--~-~~~~~~~lk~wYdGY~F~~~~~--~~~iYNP~Svl~~l 282 (284)
T PF09820_consen 222 YFGFTEEEVETLLKYYIENLAEEQ--D-REELLEELKEWYDGYHFGESSE--GERIYNPWSVLNYL 282 (284)
T ss_pred hcCcCHHHHHHHHHHHHHHhhhcc--c-hHHHHHHHHHHcCCcccCCCCC--CCCEEChHHHHHHh
Confidence 345 78999999999877655422 3 6778899999998754221111 24567999998765
No 19
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=26.65 E-value=62 Score=27.29 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 036912 420 FISALAALILLLLTVAQTVFTVYS 443 (445)
Q Consensus 420 ~~s~~aA~ill~lT~lQTv~sv~~ 443 (445)
.++.+.|++..++.+++|||+-++
T Consensus 28 vLGSvLA~~Gvv~GLVEtVCsPFs 51 (102)
T PF15103_consen 28 VLGSVLAFFGVVIGLVETVCSPFS 51 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHhCccc
Confidence 467778899999999999998664
No 20
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=25.94 E-value=54 Score=31.64 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCCcceeeecCccccccCCCCCcccEEEeCcccCCCchhchHHHHHHHHHHHHHhh
Q 036912 44 GKQSCCIFRLPQSFININGKSYQPHIVSIGPYHHGEAHVKIIEEHKWRYLGSLLNR 99 (445)
Q Consensus 44 ~~~~~~I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~l~~~l~r 99 (445)
.+..-|++++|-. +.+|+||||-.++.-..||+|=-.-+.....+
T Consensus 21 nsp~sclv~~t~d-----------lhlalaP~yl~npl~~~i~ehld~~vl~y~~~ 65 (253)
T KOG4134|consen 21 NSPESCLVCITTD-----------LHLALAPYYLANPLHALIEEHLDTKVLFYDSG 65 (253)
T ss_pred cCCcceEEEeeeh-----------eeeeecchhhcchhHHHHHHHhhHHHhhhccC
Confidence 4556699999976 57999999998876557777755444444444
No 21
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=24.76 E-value=89 Score=25.81 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=18.0
Q ss_pred cchH---HHHHHHHHHHHHHHHHHHHHHHh
Q 036912 415 DSPW---SFISALAALILLLLTVAQTVFTV 441 (445)
Q Consensus 415 ~nPW---~~~s~~aA~ill~lT~lQTv~sv 441 (445)
++|| .++-++-+++-+|..++||+++.
T Consensus 13 rspWrls~I~d~Fwgi~~fI~lFF~Tl~~p 42 (91)
T PF10961_consen 13 RSPWRLSRITDFFWGIINFIVLFFQTLFSP 42 (91)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566 35556666666777778888764
No 22
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=20.65 E-value=1.4e+02 Score=23.99 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=13.6
Q ss_pred ccccchHHHHHHHHHHHHH
Q 036912 412 KYFDSPWSFISALAALILL 430 (445)
Q Consensus 412 ~yf~nPW~~~s~~aA~ill 430 (445)
..|.||-..+++++|++++
T Consensus 5 vR~kNk~fw~ali~al~l~ 23 (78)
T TIGR01598 5 VRLKNKATLIALLGALFLA 23 (78)
T ss_pred eeecCHHHHHHHHHHHHHH
Confidence 3467787778888877666
Done!