Query 036912
Match_columns 445
No_of_seqs 132 out of 668
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:50:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l27_B Peptide agonist; CRF, E 14.4 34 0.0012 22.5 -0.1 21 302-323 1-21 (38)
2 2x4i_A CAG38848, uncharacteriz 13.2 1.7E+02 0.0059 24.1 3.7 31 345-376 29-59 (114)
3 3s8f_C Cytochrome C oxidase po 12.7 1.4E+02 0.0048 19.3 2.4 23 421-443 6-28 (34)
4 2rmf_A Urocortin, HUCN1; CRF l 12.5 27 0.00093 23.3 -1.0 20 302-322 3-22 (40)
5 2j6b_A AFV3-109; sulfolobus, c 10.9 1.6E+02 0.0053 24.1 2.8 32 344-376 26-57 (109)
6 2kru_A Light-independent proto 10.8 1E+02 0.0034 22.8 1.4 13 186-198 15-27 (63)
7 1v54_G Cytochrome C oxidase po 10.3 1.7E+02 0.0059 22.8 2.7 24 416-439 14-37 (85)
8 3ism_C CG4930; endonuclease, e 9.8 2.2E+02 0.0074 27.7 3.7 69 343-411 217-301 (359)
9 2w84_A Peroxisomal membrane pr 9.3 2.6E+02 0.0088 21.0 3.2 27 346-378 37-63 (70)
10 3ff5_A PEX14P, peroxisomal bio 9.2 2.4E+02 0.0081 20.1 2.9 21 347-373 33-53 (54)
No 1
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=14.38 E-value=34 Score=22.50 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=15.9
Q ss_pred ccEEecCcchhhhhhHHHHhhh
Q 036912 302 PTITIDDFMTSFLLNCVAYEQC 323 (445)
Q Consensus 302 P~L~id~~T~~llrNLiA~Eq~ 323 (445)
|++.+| -|.-+|||++-....
T Consensus 1 PPiSlD-LTFhlLR~m~emar~ 21 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAKA 21 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHHH
Confidence 667666 678999999876543
No 2
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=13.17 E-value=1.7e+02 Score=24.07 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=24.6
Q ss_pred hhhHHHHhhCCccccCCCChHHHHHHHHHhcc
Q 036912 345 ARDVEYLCDGNIIENNLGTDAEVALFINNLGK 376 (445)
Q Consensus 345 ~~DV~lL~~~GIi~~~lgsdeeva~lF~~L~~ 376 (445)
.++++.+..++-+++..| ++++|++.+.||.
T Consensus 29 ~~EAk~~v~~~~~iSaIG-H~sTA~lls~Llg 59 (114)
T 2x4i_A 29 RLEFCENIDNEDIINSIG-HDSTIQLINSLCG 59 (114)
T ss_dssp HHHHHHHHCCTTEEECCC-CHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCeEEeec-cHHHHHHHHHHhC
Confidence 566777776777777888 5689999999996
No 3
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=12.66 E-value=1.4e+02 Score=19.25 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 036912 421 ISALAALILLLLTVAQTVFTVYS 443 (445)
Q Consensus 421 ~s~~aA~ill~lT~lQTv~sv~~ 443 (445)
.++++++.++-+.++=+++.++.
T Consensus 6 ~GTl~~V~ilg~~I~i~W~~vf~ 28 (34)
T 3s8f_C 6 KGALAVILVLTLTILVFWLGVYA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceehHHHHHHHHHHHHHHHHHe
Confidence 35666777777777777777663
No 4
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=12.49 E-value=27 Score=23.25 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=15.1
Q ss_pred ccEEecCcchhhhhhHHHHhh
Q 036912 302 PTITIDDFMTSFLLNCVAYEQ 322 (445)
Q Consensus 302 P~L~id~~T~~llrNLiA~Eq 322 (445)
|++.|| -|..+||||+-...
T Consensus 3 PpiSiD-LTFHlLR~miemar 22 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLLELAR 22 (40)
T ss_dssp CCHHHH-HHHHHHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHHHHHH
Confidence 666666 67899999987654
No 5
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=10.95 E-value=1.6e+02 Score=24.14 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=25.0
Q ss_pred ChhhHHHHhhCCccccCCCChHHHHHHHHHhcc
Q 036912 344 TARDVEYLCDGNIIENNLGTDAEVALFINNLGK 376 (445)
Q Consensus 344 t~~DV~lL~~~GIi~~~lgsdeeva~lF~~L~~ 376 (445)
+.++++.+..++-+++..| ++++|++.+.||.
T Consensus 26 s~~Ea~~~l~~~~~vSaIG-H~sTA~lls~Llg 57 (109)
T 2j6b_A 26 TIQEAKELVTKEQFTSAIG-HQATAELLSSILG 57 (109)
T ss_dssp CHHHHHHHHHHSCEEECBC-SHHHHHHHHHHHT
T ss_pred CHHHHHHHhcccceEEeec-cHHHHHHHHHHhC
Confidence 5567777766667777788 5789999999997
No 6
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=10.84 E-value=1e+02 Score=22.75 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=9.8
Q ss_pred cCcchHHHHHHhh
Q 036912 186 NQIPYFVLECLFD 198 (445)
Q Consensus 186 NQIPffVLe~L~~ 198 (445)
++|||||-.++=.
T Consensus 15 kkIP~FVR~kvrr 27 (63)
T 2kru_A 15 GKVPFFVRKKVRK 27 (63)
T ss_dssp TTSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 5699999877544
No 7
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=10.34 E-value=1.7e+02 Score=22.78 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 036912 416 SPWSFISALAALILLLLTVAQTVF 439 (445)
Q Consensus 416 nPW~~~s~~aA~ill~lT~lQTv~ 439 (445)
+-|.-+|+++|+=+++++.+.++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998888888888763
No 8
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=9.84 E-value=2.2e+02 Score=27.69 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=44.2
Q ss_pred CChhhHHHHhhCCccccCCCChHHHHHHHHHhccCcc-------cCCCc--ccHHHHHHHHHHHhc-----Cch--HHHH
Q 036912 343 NTARDVEYLCDGNIIENNLGTDAEVALFINNLGKDVA-------FDMDL--CYLSKLFNDVHDYYS-----SSR--HVQW 406 (445)
Q Consensus 343 ~t~~DV~lL~~~GIi~~~lgsdeeva~lF~~L~~~~~-------~~~~~--~y~~~v~~~l~~y~~-----~rw--~~w~ 406 (445)
.-.+|-+.|-++||+.+..-.|+--.+-|+++|+.+. |+..+ .-|.++.+-|..|.. .+| |-|+
T Consensus 217 ~PleDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~fygP~~YNeWI 296 (359)
T 3ism_C 217 NPLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWI 296 (359)
T ss_dssp --CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred CcHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccCCchHhHHH
Confidence 3456778888888888887777655667888877642 43322 238899999999855 234 6888
Q ss_pred HHhcc
Q 036912 407 AAFKY 411 (445)
Q Consensus 407 a~l~~ 411 (445)
..||.
T Consensus 297 vklrd 301 (359)
T 3ism_C 297 FNLRD 301 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 9
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=9.32 E-value=2.6e+02 Score=20.98 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=21.4
Q ss_pred hhHHHHhhCCccccCCCChHHHHHHHHHhccCc
Q 036912 346 RDVEYLCDGNIIENNLGTDAEVALFINNLGKDV 378 (445)
Q Consensus 346 ~DV~lL~~~GIi~~~lgsdeeva~lF~~L~~~~ 378 (445)
+=+++|++||+ +++|+-..|++-+...
T Consensus 37 ~K~~FL~sKGL------t~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 37 TRRAFLKKKGL------TDEEIDMAFQQSGTAA 63 (70)
T ss_dssp HHHHHHHHTTC------CHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHcCC------CHHHHHHHHHHccCCC
Confidence 45788999987 7889999999865543
No 10
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=9.16 E-value=2.4e+02 Score=20.06 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=15.2
Q ss_pred hHHHHhhCCccccCCCChHHHHHHHHH
Q 036912 347 DVEYLCDGNIIENNLGTDAEVALFINN 373 (445)
Q Consensus 347 DV~lL~~~GIi~~~lgsdeeva~lF~~ 373 (445)
=+++|.+||+ +++|+-..|++
T Consensus 33 K~~FL~sKGL------t~~EI~~Al~r 53 (54)
T 3ff5_A 33 RRAFLKKKGL------TDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHTTC------CHHHHHHHHHH
T ss_pred HHHHHHHcCC------CHHHHHHHHHc
Confidence 4678888887 67777776653
Done!