BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036913
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 89 RKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
+KSLEA +K TG E L WGV+ G GLT
Sbjct: 352 KKSLEAGLKTTG-EGLDWGVLFGFGPGLT 379
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 352 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 382
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 348 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 378
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 348 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 378
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 347 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 377
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 346 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 376
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 348 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 378
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 348 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 378
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 348 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 378
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 348 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 378
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 348 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 378
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 347 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 377
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 348 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 378
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KS + +K TG E L+WGV+ G GLT
Sbjct: 348 EMRKKSTQNGLKTTG-EGLEWGVLFGFGPGLT 378
>pdb|3EGB|A Chain A, Structure Of Pellino2 Fha Domain At 3.3 Angstroms
Resolution.
pdb|3EGB|B Chain B, Structure Of Pellino2 Fha Domain At 3.3 Angstroms
Resolution
Length = 285
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 52 EAYFTAVEGSGFDSSNNVSDMGDAKKHQFPN--LKGETNRKSLEAMVKNTGKESLQWGVV 109
E Y + +GFDSS N+ A K + P+ + G T L + E Q GV
Sbjct: 145 EPYTARIFAAGFDSSKNIFLGEKAAKWKNPDGHMDGLTTNGVLVMHPRGGFTEESQPGVW 204
Query: 110 AGI-YSGLTYGLREARGAH 127
I G Y LRE R A
Sbjct: 205 REISVCGDVYTLRETRSAQ 223
>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
Length = 261
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 99 TGKESLQWGVVAGIYSGLTY 118
TG E+L+WG+V G+++ T+
Sbjct: 170 TGAEALKWGLVNGVFAEETF 189
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KSLE TG E L+WGV+ G G+T
Sbjct: 344 EMRKKSLENGQATTG-EGLEWGVLFGFGPGIT 374
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGLT 117
E +KSLE TG E L+WGV+ G G+T
Sbjct: 344 EMRKKSLENGQATTG-EGLEWGVLFGFGPGIT 374
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 29/99 (29%)
Query: 29 LLNRITESFVKAAGIGAIQAVTRE----AYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLK 84
L NR+ +AA +G+I + RE V+G+GF +G A KH F
Sbjct: 74 LANRVDGLSERAAALGSINVIRRERDGRLLGDNVDGAGF--------LGAAHKHGF---- 121
Query: 85 GETNRKSLEAMVKNTGKESLQWGVVAGIYSGLTYGLREA 123
+ GK +L G G+ S + Y L EA
Sbjct: 122 ------------EPAGKRALVIG-CGGVGSAIAYALAEA 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,898,297
Number of Sequences: 62578
Number of extensions: 184325
Number of successful extensions: 438
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 23
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)