Query 036913
Match_columns 176
No_of_seqs 183 out of 442
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:39:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 99.9 6.6E-29 1.4E-33 200.3 4.3 138 13-173 26-164 (168)
2 TIGR00980 3a0801so1tim17 mitoc 99.9 1.6E-25 3.4E-30 182.8 12.1 118 26-172 6-127 (170)
3 PTZ00236 mitochondrial import 99.9 4E-25 8.6E-30 179.5 11.7 117 27-172 9-129 (164)
4 PF02466 Tim17: Tim17/Tim22/Ti 99.9 1.1E-23 2.3E-28 160.5 13.9 124 28-176 1-128 (128)
5 TIGR00983 3a0801s02tim23 mitoc 99.9 7.1E-22 1.5E-26 158.2 12.4 112 28-168 33-148 (149)
6 KOG1652 Mitochondrial import i 99.9 3.6E-23 7.7E-28 169.8 0.3 123 26-173 6-128 (183)
7 KOG3324 Mitochondrial import i 99.5 1.4E-14 3E-19 120.8 7.3 86 86-174 108-197 (206)
8 COG5596 TIM22 Mitochondrial im 99.5 4.1E-15 9E-20 123.0 3.4 137 28-173 45-187 (191)
9 KOG4608 Uncharacterized conser 97.0 0.00012 2.5E-09 63.6 -0.6 85 48-147 91-179 (270)
10 COG5596 TIM22 Mitochondrial im 95.7 0.0023 4.9E-08 53.6 -0.6 110 26-157 27-138 (191)
11 PF10247 Romo1: Reactive mitoc 94.2 0.18 4E-06 35.9 5.8 34 27-60 1-34 (67)
12 KOG4096 Uncharacterized conser 90.8 0.48 1E-05 34.4 4.2 69 26-119 4-72 (75)
13 PF05818 TraT: Enterobacterial 82.8 1.9 4.2E-05 36.9 4.2 40 132-172 89-128 (215)
14 KOG1398 Uncharacterized conser 79.0 3.8 8.2E-05 38.4 5.0 53 92-144 71-123 (460)
15 KOG1398 Uncharacterized conser 62.8 8.5 0.00018 36.1 3.5 42 105-146 305-346 (460)
16 PRK13731 conjugal transfer sur 59.4 12 0.00025 32.8 3.6 45 128-172 111-158 (243)
17 PF13436 Gly-zipper_OmpA: Glyc 55.9 31 0.00067 26.5 5.1 45 127-172 50-94 (118)
18 PF13488 Gly-zipper_Omp: Glyci 44.8 81 0.0018 20.5 5.0 38 134-172 4-41 (46)
19 PTZ00236 mitochondrial import 40.0 2.1E+02 0.0046 23.5 9.7 27 30-56 16-42 (164)
20 PF12732 YtxH: YtxH-like prote 39.2 49 0.0011 22.9 3.6 24 37-60 1-24 (74)
21 PF13940 Ldr_toxin: Toxin Ldr, 38.8 30 0.00064 21.7 2.0 22 126-147 11-32 (35)
22 PF10439 Bacteriocin_IIc: Bact 36.8 1E+02 0.0022 21.1 4.8 31 129-161 25-55 (65)
23 PF14689 SPOB_a: Sensor_kinase 32.1 23 0.00049 24.1 0.9 23 116-138 9-34 (62)
24 PRK11280 hypothetical protein; 26.0 1.6E+02 0.0034 24.5 5.0 38 133-170 68-107 (170)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.6e-29 Score=200.34 Aligned_cols=138 Identities=21% Similarity=0.301 Sum_probs=115.9
Q ss_pred cCCCCCccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHH
Q 036913 13 ELPGFEKGGFFDLGHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSL 92 (176)
Q Consensus 13 ~~~~~~~~~~~d~g~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~ 92 (176)
|.-..++...++.+++|+.|++.+.|.++++|.++++|..+.+.- + +|+. ..+ ++.++++
T Consensus 26 ~~~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~--~---------~dP~-i~~--------~~ar~q~ 85 (168)
T KOG3225|consen 26 EVGDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQ--P---------NDPT-IYR--------MPARKQV 85 (168)
T ss_pred ccCChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccC--C---------CCCc-hhh--------hhhHHHH
Confidence 444567788899999999999999999999999999999998842 1 1110 111 4555665
Q ss_pred -HHHHHHhccchhhHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHH
Q 036913 93 -EAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANL 171 (176)
Q Consensus 93 -~~~~k~~gk~g~~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~ 171 (176)
+++.+.++..+.+|+++|++|+++||.||++|+||||+|++++||+||+.++.|+ ||++.++||++| ++||++||+
T Consensus 86 ~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~ra--Gp~a~~~G~agf-a~fS~~id~ 162 (168)
T KOG3225|consen 86 AKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGCVTGGSLGYRA--GPKAAAIGCAGF-AAFSAAIDK 162 (168)
T ss_pred HHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeeeeeccchhhcc--cchhhhhchhHH-HHHHHHHHH
Confidence 5555556666678999999999999999999999999999999999999999999 699999999999 999999998
Q ss_pred Hc
Q 036913 172 LT 173 (176)
Q Consensus 172 ~~ 173 (176)
+.
T Consensus 163 y~ 164 (168)
T KOG3225|consen 163 YM 164 (168)
T ss_pred hh
Confidence 74
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.93 E-value=1.6e-25 Score=182.79 Aligned_cols=118 Identities=25% Similarity=0.318 Sum_probs=94.2
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccch--
Q 036913 26 GHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKES-- 103 (176)
Q Consensus 26 g~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g-- 103 (176)
.+||+.|++|++..+..+|++. ++.+...+|.+|.+.+ ++++..++.+..++
T Consensus 6 r~pcp~r~~d~~G~af~~G~~~----G~~~g~~~G~rnsp~g----------------------~rl~g~l~av~~rap~ 59 (170)
T TIGR00980 6 REPCPYRILDDFGGAFAMGTIG----GSIFQAFKGFRNSPKG----------------------EKLVGAMRAIKTRAPV 59 (170)
T ss_pred cCCCcchhHHhhhHHHHHHHHH----HHHHHHHHHhhcCCcc----------------------chhhHHHHHHHhhhhh
Confidence 3899999999999999999988 5555555565544222 23445666555554
Q ss_pred --hhHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHH
Q 036913 104 --LQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLL 172 (176)
Q Consensus 104 --~~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~ 172 (176)
.+||+||++|+++||+++++|+||||||+++|||+||++|+++. |++ .++++++++++|+++||+.
T Consensus 60 ~g~~Fav~g~lys~~ec~i~~~R~KeD~~NsiiAG~~TGa~l~~r~--G~~-a~~~~aa~gg~~la~ie~~ 127 (170)
T TIGR00980 60 LGGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRG--GPR-AMRGSAILGACILAVIEGV 127 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc--ChH-HHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999 565 4555555669999999975
No 3
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.92 E-value=4e-25 Score=179.52 Aligned_cols=117 Identities=22% Similarity=0.284 Sum_probs=95.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchh--
Q 036913 27 HPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESL-- 104 (176)
Q Consensus 27 ~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~-- 104 (176)
+||+.|++|++.-+..+|++. ++.+..++|.+|+|.| ++++..++.+++++.
T Consensus 9 ~pcp~ri~dd~G~af~~G~vg----G~~~~~~~G~rnsp~g----------------------~rl~g~l~~~~~rap~~ 62 (164)
T PTZ00236 9 EPCPDRIIEDMGGAFSMGCIG----GFIWHFLKGMRNSPKG----------------------ERFSGGFYLLRKRAPIL 62 (164)
T ss_pred CCCchHHHHhccHHHHHHHHH----HHHHHHHHHHHhCCCc----------------------chHHHHHHHHHhhhhhH
Confidence 899999999999999998887 7788888887665433 245556666665544
Q ss_pred --hHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHH
Q 036913 105 --QWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLL 172 (176)
Q Consensus 105 --~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~ 172 (176)
+||+||++|+++||+++++|+||||||+++|||+||++|+++. |++++ +.++++|+++..+||.+
T Consensus 63 g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~--G~~~~-~~~a~~Gg~~~~~ie~~ 129 (164)
T PTZ00236 63 GGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRG--GWRSA-VRNAIFGGILLGIIELV 129 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhc--ChHHH-HHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999 56644 55666668887777754
No 4
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.91 E-value=1.1e-23 Score=160.55 Aligned_cols=124 Identities=27% Similarity=0.340 Sum_probs=107.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhcc----ch
Q 036913 28 PLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGK----ES 103 (176)
Q Consensus 28 pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk----~g 103 (176)
||+.|+++++++++.+|++++.+.+++....... ++.+.+++++.+++.+++ .+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 58 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPP----------------------RGSPLRPRLRSILNAVGRRGPRHG 58 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----------------------cCCcHhHHHHHHHHHHhccchHHH
Confidence 7999999999999999999999999985422210 124566788899999999 77
Q ss_pred hhHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHHcccC
Q 036913 104 LQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLTGIF 176 (176)
Q Consensus 104 ~~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~~~~~ 176 (176)
.+||.++++|+++||.+|++|+|||+||+++||++||++++.+. +++..+.+++++ ++++.++|+++.+|
T Consensus 59 ~~~g~~~~~y~~~~~~l~~~R~k~D~~N~~~aG~~aGa~~~~~~--g~~~~~~~~~~~-a~~~~~~~~~~~~~ 128 (128)
T PF02466_consen 59 ARFGSFGGLYSGIECALERLRGKDDPWNSAIAGAAAGAVLGLRS--GPRGMASGAALG-AAFAAAVEYYGRMP 128 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhcc--ChHHHHHHHHHH-HHHHHHHHHHhccC
Confidence 88999999999999999999999999999999999999999988 577767666655 99999999998765
No 5
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.88 E-value=7.1e-22 Score=158.18 Aligned_cols=112 Identities=22% Similarity=0.239 Sum_probs=95.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchhh--
Q 036913 28 PLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQ-- 105 (176)
Q Consensus 28 pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~~-- 105 (176)
++...+..+++.+..+|++++++++.... |+ +.+.|.+++.+++++++++..
T Consensus 33 ~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~------------~~--------------~~~~k~rln~~ln~~~~~g~~~G 86 (149)
T TIGR00983 33 DLCFGTGTCYLTGLAIGALNGLRLGLKET------------QS--------------MPWTKLRLNQILNMVTRRGPFWG 86 (149)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHhhC------------CC--------------CCcHHHHHHHHHHHHHhHhHHHH
Confidence 56688999999999999999888777641 11 135678999999999999874
Q ss_pred --HHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHH
Q 036913 106 --WGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTA 168 (176)
Q Consensus 106 --fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~a 168 (176)
||+|+++|+++||++|++|+||||+|+++|||+||++++.+. |+++++++|++. ++++.+
T Consensus 87 ~~~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~--G~r~~~~g~~~G-~~l~~~ 148 (149)
T TIGR00983 87 NTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTR--GLRGMARSGALG-ATAAGV 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhcc--ChHHHHHHhHHH-HHHhhc
Confidence 569999999999999999999999999999999999999999 699999998876 665543
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.6e-23 Score=169.76 Aligned_cols=123 Identities=27% Similarity=0.286 Sum_probs=105.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchhh
Q 036913 26 GHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQ 105 (176)
Q Consensus 26 g~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~~ 105 (176)
..||+.|+|+++.-.+.+|.+. ++.|+.++|.+|+|.| . ++.|.. ..+..+....+.+
T Consensus 6 r~pcp~riv~d~g~afamg~ig----G~~f~~ikG~~nap~G-------~------r~~gg~-----~av~~~ap~~ggs 63 (183)
T KOG1652|consen 6 REPCPIRIVDDCGGAFAMGTIG----GSVFQLIKGFRNAPSG-------A------RLVGGI-----SAVKMRAPQSGGS 63 (183)
T ss_pred CCCCCceeeccccchhhhcccc----cceeeeeeeeecCCcc-------c------ccccch-----hhhhccCcccccc
Confidence 4799999999999999999998 8889999999988777 1 222222 3455566677789
Q ss_pred HHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHHc
Q 036913 106 WGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLT 173 (176)
Q Consensus 106 fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~~ 173 (176)
|++||++||.+||++..+|+|+|.||++++||+||++|+.+.+ +.+++++|+++++++..+|-+.
T Consensus 64 FAvwgglfSt~dC~Lv~~R~KeDpwNsivsGa~TGg~La~r~g---~~a~~~sa~~~g~~lamieg~g 128 (183)
T KOG1652|consen 64 FAVWGGLFSTVDCALVAIRKKEDPWNSIVSGAATGGLLAARGG---PKAMLTSAITGGLLLAMIEGLG 128 (183)
T ss_pred eeeeechhhHHHHHHHHHhcccchHHHHHHHhhccceeecccc---HHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999994 6678888888899999998653
No 7
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.4e-14 Score=120.78 Aligned_cols=86 Identities=26% Similarity=0.361 Sum_probs=76.2
Q ss_pred cchHHHHHHHHHHhccchhhHH----HHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHH
Q 036913 86 ETNRKSLEAMVKNTGKESLQWG----VVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAIT 161 (176)
Q Consensus 86 ~~~~~~~~~~~k~~gk~g~~fg----~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~ 161 (176)
++.|-+++.+++.++|++..|| +++.+|+++|.+|++.|+||||+|+++||++||+++.... |++++.+++++.
T Consensus 108 ~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~--Glr~~av~ga~g 185 (206)
T KOG3324|consen 108 ASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTR--GLRAAAVAGAVG 185 (206)
T ss_pred CccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCC--CchHHHHHHHHH
Confidence 6778899999999999999875 9999999999999999999999999999999999999998 699999999876
Q ss_pred HHHHHHHHHHHcc
Q 036913 162 GAAISTAANLLTG 174 (176)
Q Consensus 162 gaAfS~aie~~~~ 174 (176)
+.++.++-..+-
T Consensus 186 -~~aa~aw~l~k~ 197 (206)
T KOG3324|consen 186 -GTAAAAWTLGKR 197 (206)
T ss_pred -HHHHHHHHHhhh
Confidence 666666554443
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.1e-15 Score=122.95 Aligned_cols=137 Identities=22% Similarity=0.197 Sum_probs=99.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CCCCCCCccccccccCCCccccchHHHHHHHHHHhccchh-
Q 036913 28 PLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFD--SSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESL- 104 (176)
Q Consensus 28 pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~--~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~- 104 (176)
-|+-.++.+.+++...|...+.+.++......-.-.+ +-| .+.+--.+.++. .+.|.+++..++++++++.
T Consensus 45 ~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg---~vwGgl~~~i~~---~~~r~q~~~~~~n~~~rg~f 118 (191)
T COG5596 45 SCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFG---GVWGGLFSTIDC---TPFRLQLKEQLNNAGKRGFF 118 (191)
T ss_pred cchhhhhhhcccccccccccccchhhcccccccccccCcccc---ccccceeecccc---chHHHHHhhccccccccccc
Confidence 3666666666666666666666665544211100000 000 000000111222 5778999999999999987
Q ss_pred ---hHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHHc
Q 036913 105 ---QWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLLT 173 (176)
Q Consensus 105 ---~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~~ 173 (176)
++|+.|++|+++||.|+..|+||||.|++.+|+.||+.+..+. +++++.++.+++ +|+|..++..+
T Consensus 119 tG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~--g~qa~~~~~a~~-aa~s~~~~~~~ 187 (191)
T COG5596 119 TGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSA--GPQAMPMGGAGF-AAFSAGITLAM 187 (191)
T ss_pred cccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhc--cccccccCccch-hhhhhhHHhhh
Confidence 6889999999999999999999999999999999999999999 699999999999 99999998754
No 9
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.00012 Score=63.61 Aligned_cols=85 Identities=19% Similarity=0.372 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchhhHH----HHHHHHhchhhhhhhh
Q 036913 48 AVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQWG----VVAGIYSGLTYGLREA 123 (176)
Q Consensus 48 ~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~~fg----~vgglfsg~ec~ie~~ 123 (176)
..+..|+.+.++++. + + .-++|| +.-++..+...+..-|.++.|| ++-+.|-++.-.+..|
T Consensus 91 t~s~~A~~~y~~nsq----a---~---ky~sh~-----davk~~~d~air~farGgf~~G~R~alfttSff~l~t~l~vy 155 (270)
T KOG4608|consen 91 TASIHAKQQYIENSQ----A---E---KYHSHF-----DAVKSAHDAAIRGFARGGFRWGWRTALFTTSFFTLNTSLNVY 155 (270)
T ss_pred hHhHHHHHHHHhccH----H---H---HhhChH-----HHHHHHHHHHHHHHhhccccceeEEeeehhhHHHHHHHHHHH
Confidence 356677777776531 1 1 223333 1222233344555777777665 7888888888899999
Q ss_pred hhccchhHHHHHHHHHHHHHhhcc
Q 036913 124 RGAHDWKNSAVAGAITGVALALTI 147 (176)
Q Consensus 124 Rgk~D~~Ns~iAGa~TGa~la~~~ 147 (176)
|+|||.+|=+.||++||+++...-
T Consensus 156 Rgk~a~~~fvaaga~tgsvF~~~~ 179 (270)
T KOG4608|consen 156 RGKDALSHFVAAGAVTGSVFRINV 179 (270)
T ss_pred cCchhhhhhhccccceeeeEEeeh
Confidence 999999999999999999887766
No 10
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.0023 Score=53.64 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=77.0
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchhh
Q 036913 26 GHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQ 105 (176)
Q Consensus 26 g~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~~ 105 (176)
..||.--....|-+..-++.+. ++-...++|+++.+.+ + ....++..-....--.+.+
T Consensus 27 ~d~~~~~~l~~~~~~~~~~~i~----k~~~s~l~G~~~g~~~---g---------------~f~ssl~y~t~~~~~~g~n 84 (191)
T COG5596 27 RDPCPLEKLADFMKAFSYSCIG----KSALSGLKGFRLGGPS---G---------------GFSSSLAYGTGLVHLLGLN 84 (191)
T ss_pred cCchhhhHHhhhccchhhcchh----hhhhhccccccccccc---c---------------cchhhcccccccccccCcc
Confidence 4799999999999988888776 6777778887643322 1 0111111111222233457
Q ss_pred HH-HHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccCC-CcHHHHHH
Q 036913 106 WG-VVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALTIDD-SSHEQVVQ 157 (176)
Q Consensus 106 fg-~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g~-g~~~~~vg 157 (176)
|| +||++|+.++|..+++|-|.|.||....|..||..++..... -.+..++.
T Consensus 85 fg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~ 138 (191)
T COG5596 85 FGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIIT 138 (191)
T ss_pred ccccccceeeccccchHHHHHhhccccccccccccccccceeeeecccchhhhh
Confidence 77 999999999999999999999999999999999888766541 12344555
No 11
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=94.21 E-value=0.18 Score=35.86 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 036913 27 HPLLNRITESFVKAAGIGAIQAVTREAYFTAVEG 60 (176)
Q Consensus 27 ~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g 60 (176)
+.|+.|+-..+.+++.+|.+.+...++|.....+
T Consensus 1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g 34 (67)
T PF10247_consen 1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYG 34 (67)
T ss_pred CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccC
Confidence 4699999999999999999999999999988866
No 12
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.75 E-value=0.48 Score=34.37 Aligned_cols=69 Identities=16% Similarity=0.272 Sum_probs=51.3
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccccccccCCCccccchHHHHHHHHHHhccchhh
Q 036913 26 GHPLLNRITESFVKAAGIGAIQAVTREAYFTAVEGSGFDSSNNVSDMGDAKKHQFPNLKGETNRKSLEAMVKNTGKESLQ 105 (176)
Q Consensus 26 g~pc~nr~vdsfvk~g~~Ga~~~~~~~ay~~~~~g~~~~~~g~p~~~~~~~~~~~p~~~g~~~~~~~~~~~k~~gk~g~~ 105 (176)
.+.|..++-..+.+++.+|.+-++.++.|.....|. + .+..++.+-|.|-..+..
T Consensus 4 qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~--------~-----------------g~~~vr~iGkt~~~Sagt 58 (75)
T KOG4096|consen 4 QPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGP--------R-----------------GRGLVRTIGKTMLQSAGT 58 (75)
T ss_pred CccHHHHHHHHHHHHhhhhhhhhhhccchhheeecC--------C-----------------hhHHHHHHhHHHHhccch
Confidence 467999999999999999999999999999877652 1 224444555555555667
Q ss_pred HHHHHHHHhchhhh
Q 036913 106 WGVVAGIYSGLTYG 119 (176)
Q Consensus 106 fg~vgglfsg~ec~ 119 (176)
||++=++=+++.|.
T Consensus 59 FG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 59 FGLFMGIGSGIRCG 72 (75)
T ss_pred hhhhhhhhhheecC
Confidence 88777777777775
No 13
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=82.76 E-value=1.9 Score=36.92 Aligned_cols=40 Identities=30% Similarity=0.410 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHH
Q 036913 132 SAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLL 172 (176)
Q Consensus 132 s~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~ 172 (176)
++++|+++|+.++.... +....++|.++.||++..+++.+
T Consensus 89 ga~~Ga~~G~~~g~~~~-~~~g~~~G~GlaGalig~~ada~ 128 (215)
T PF05818_consen 89 GALAGAATGAAIGAYNS-GSAGAAIGAGLAGALIGMIADAM 128 (215)
T ss_pred hHHHHhHHhhhhccccC-CccchhhhhhHHHhHHHHHHhhh
Confidence 45677777777775553 45667888778888899888855
No 14
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.97 E-value=3.8 Score=38.41 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=44.5
Q ss_pred HHHHHHHhccchhhHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHh
Q 036913 92 LEAMVKNTGKESLQWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALA 144 (176)
Q Consensus 92 ~~~~~k~~gk~g~~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la 144 (176)
.+.+...+++.++.+..-.+-|-...|.+.+++||.-++|+..+|++.+--++
T Consensus 71 ~~k~~~~~cqs~lflvtn~~~f~al~C~lRkwlgkftp~t~glv~s~las~ia 123 (460)
T KOG1398|consen 71 DLKVREEACQSGLFLVTNTGSFHALRCCLRKWLGKFTPLTSGLVGSVLASSIA 123 (460)
T ss_pred HHHHHHHHHhhceeeeechHHHHHHHHHHHHHhcccCcccHHHHHHHHhhhhh
Confidence 34555667777788888889999999999999999999999999999886444
No 15
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.76 E-value=8.5 Score=36.14 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=36.2
Q ss_pred hHHHHHHHHhchhhhhhhhhhccchhHHHHHHHHHHHHHhhc
Q 036913 105 QWGVVAGIYSGLTYGLREARGAHDWKNSAVAGAITGVALALT 146 (176)
Q Consensus 105 ~fg~vgglfsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~ 146 (176)
..|.+-++|.++.|.+.+++-++|-.|+++||.+++-.+..-
T Consensus 305 FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmfy 346 (460)
T KOG1398|consen 305 FLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMFY 346 (460)
T ss_pred HHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeeec
Confidence 456778899999999999999999999999999988655543
No 16
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=59.42 E-value=12 Score=32.82 Aligned_cols=45 Identities=24% Similarity=0.436 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHHHHHhhcc---CCCcHHHHHHhHHHHHHHHHHHHHH
Q 036913 128 DWKNSAVAGAITGVALALTI---DDSSHEQVVQCAITGAAISTAANLL 172 (176)
Q Consensus 128 D~~Ns~iAGa~TGa~la~~~---g~g~~~~~vg~A~~gaAfS~aie~~ 172 (176)
-+.+..+.|+++||+++..- +.+....++|.++.|+++.+++|.+
T Consensus 111 ~~L~~Gy~ga~~Gaa~G~~~~~y~~~~ag~~~G~Glagglig~~ada~ 158 (243)
T PRK13731 111 GWLNRGYEGAAVGAALGAGITGYNSNSAGATLGVGLAAGLVGMAADAM 158 (243)
T ss_pred HHHhhchhhHHHHHHhhhhhhcccCCcchhhHHHHHHHHHHHHHhhhh
Confidence 34343444444444443322 2245667888888889999988854
No 17
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=55.85 E-value=31 Score=26.47 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=27.3
Q ss_pred cchhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHH
Q 036913 127 HDWKNSAVAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLL 172 (176)
Q Consensus 127 ~D~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~ 172 (176)
++.....+.|++.|++++.-.++....+++|.++- +++-.++...
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~G-a~~G~~~g~~ 94 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAG-AAVGAAAGAA 94 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHH-HHHHHHhhhh
Confidence 45555667777888888877763235556665543 5555555443
No 18
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=44.77 E-value=81 Score=20.53 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhccCCCcHHHHHHhHHHHHHHHHHHHHH
Q 036913 134 VAGAITGVALALTIDDSSHEQVVQCAITGAAISTAANLL 172 (176)
Q Consensus 134 iAGa~TGa~la~~~g~g~~~~~vg~A~~gaAfS~aie~~ 172 (176)
.-|++.|++++...++..+..+++.+ .|++.-.++.+.
T Consensus 4 ~iGA~~Ga~iG~~~g~~~~ga~iGa~-vGa~~G~~ig~~ 41 (46)
T PF13488_consen 4 AIGAAAGAAIGAATGGPGKGAAIGAA-VGAAVGAAIGNY 41 (46)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHH-HHHHHHHHHHHH
Confidence 45777777777666532244555544 446666655544
No 19
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=40.04 E-value=2.1e+02 Score=23.53 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036913 30 LNRITESFVKAAGIGAIQAVTREAYFT 56 (176)
Q Consensus 30 ~nr~vdsfvk~g~~Ga~~~~~~~ay~~ 56 (176)
.+-+-.+|..+...|.+|.+..+.+..
T Consensus 16 ~dd~G~af~~G~vgG~~~~~~~G~rns 42 (164)
T PTZ00236 16 IEDMGGAFSMGCIGGFIWHFLKGMRNS 42 (164)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhC
Confidence 334667888888888887666665554
No 20
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=39.16 E-value=49 Score=22.90 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Q 036913 37 FVKAAGIGAIQAVTREAYFTAVEG 60 (176)
Q Consensus 37 fvk~g~~Ga~~~~~~~ay~~~~~g 60 (176)
|+.+..+|++-|+..+-++....|
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~sG 24 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKSG 24 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCc
Confidence 455666666666666666654433
No 21
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=38.80 E-value=30 Score=21.75 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.2
Q ss_pred ccchhHHHHHHHHHHHHHhhcc
Q 036913 126 AHDWKNSAVAGAITGVALALTI 147 (176)
Q Consensus 126 k~D~~Ns~iAGa~TGa~la~~~ 147 (176)
-||..-++++|.+++.++++-.
T Consensus 11 WhDLAAP~iagIi~s~iv~w~~ 32 (35)
T PF13940_consen 11 WHDLAAPIIAGIIASLIVGWLR 32 (35)
T ss_pred HHHhHhHHHHHHHHHHHHHHHH
Confidence 5899999999999999998644
No 22
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=36.79 E-value=1e+02 Score=21.10 Aligned_cols=31 Identities=23% Similarity=0.110 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHhhccCCCcHHHHHHhHHH
Q 036913 129 WKNSAVAGAITGVALALTIDDSSHEQVVQCAIT 161 (176)
Q Consensus 129 ~~Ns~iAGa~TGa~la~~~g~g~~~~~vg~A~~ 161 (176)
.+..+++++++|++.....+ +....+.+++.
T Consensus 25 ~~~~~~~~~~~G~~~G~~~g--~~~g~~~Ga~~ 55 (65)
T PF10439_consen 25 CVGGVGGGAAGGAAAGAAGG--PPVGAVAGAIV 55 (65)
T ss_pred HHHHHHHHHHHHHHHhhhcc--chhHHHHHHHH
Confidence 44456788888888888874 43333344444
No 23
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.11 E-value=23 Score=24.07 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=15.5
Q ss_pred hhhhhhhhhh-ccchhHHH--HHHHH
Q 036913 116 LTYGLREARG-AHDWKNSA--VAGAI 138 (176)
Q Consensus 116 ~ec~ie~~Rg-k~D~~Ns~--iAGa~ 138 (176)
++-.++.+|. +|||.|=+ +.|.+
T Consensus 9 ~~~~~~~lR~~RHD~~NhLqvI~gll 34 (62)
T PF14689_consen 9 LEELIDSLRAQRHDFLNHLQVIYGLL 34 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455666776 89999954 45554
No 24
>PRK11280 hypothetical protein; Provisional
Probab=25.99 E-value=1.6e+02 Score=24.50 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhccCC--CcHHHHHHhHHHHHHHHHHHH
Q 036913 133 AVAGAITGVALALTIDD--SSHEQVVQCAITGAAISTAAN 170 (176)
Q Consensus 133 ~iAGa~TGa~la~~~g~--g~~~~~vg~A~~gaAfS~aie 170 (176)
.+.|++.|++++..-++ |...+.+..|+.|+.+.-.++
T Consensus 68 tv~Gav~Gg~~G~~iGgG~Gr~~at~~Ga~~G~~~G~~i~ 107 (170)
T PRK11280 68 SVLGAVAGGVLGHQFGGGRGKDVATVAGALGGGYAGNQIQ 107 (170)
T ss_pred HHHHHHHHHHhhhhccCCCccHHHHHHHHHHHHHHHHHHH
Confidence 45666778888776543 333455555666566665554
Done!