Query 036913
Match_columns 176
No_of_seqs 183 out of 442
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2g9p_A Antimicrobial peptide l 29.4 17 0.00058 20.3 0.7 12 116-127 15-26 (26)
2 2hjm_A Hypothetical protein PF 17.2 1E+02 0.0035 22.6 3.0 53 91-148 12-66 (103)
3 2i3t_B Spindle assembly checkp 15.9 34 0.0012 22.5 0.2 17 115-131 24-46 (54)
4 2y6w_A BCL-2-like protein 2; a 14.1 3.1E+02 0.011 21.0 5.4 30 87-116 87-116 (177)
5 1cii_A Colicin IA; bacteriocin 13.7 87 0.003 29.1 2.3 75 94-170 505-591 (602)
6 4aq3_A Apoptosis regulator BCL 13.6 3.3E+02 0.011 20.9 5.4 31 86-116 86-116 (169)
7 3l2c_A Forkhead box protein O4 12.1 1.1E+02 0.0038 22.3 2.1 26 108-133 46-77 (110)
8 1ixm_A SPO0B, protein (sporula 11.9 64 0.0022 25.3 0.7 25 114-138 16-43 (192)
9 2xa0_A BCL-2, apoptosis regula 11.7 3.5E+02 0.012 21.7 5.2 30 86-115 124-153 (207)
10 1o0l_A Apoptosis regulator BCL 11.3 3.9E+02 0.013 20.6 5.2 30 86-115 78-107 (188)
No 1
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=29.39 E-value=17 Score=20.27 Aligned_cols=12 Identities=42% Similarity=1.043 Sum_probs=9.4
Q ss_pred hhhhhhhhhhcc
Q 036913 116 LTYGLREARGAH 127 (176)
Q Consensus 116 ~ec~ie~~Rgk~ 127 (176)
+.|++.+.||||
T Consensus 15 isyavkkargkh 26 (26)
T 2g9p_A 15 ISYAVKKARGKH 26 (26)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHHccCC
Confidence 457788999987
No 2
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, P structure initiative; 2.90A {Pyrococcus furiosus}
Probab=17.15 E-value=1e+02 Score=22.57 Aligned_cols=53 Identities=19% Similarity=0.453 Sum_probs=38.2
Q ss_pred HHHHHHHHhccchhhHHHHHHH--HhchhhhhhhhhhccchhHHHHHHHHHHHHHhhccC
Q 036913 91 SLEAMVKNTGKESLQWGVVAGI--YSGLTYGLREARGAHDWKNSAVAGAITGVALALTID 148 (176)
Q Consensus 91 ~~~~~~k~~gk~g~~fg~vggl--fsg~ec~ie~~Rgk~D~~Ns~iAGa~TGa~la~~~g 148 (176)
.++...+.+|-++ ++-.+ |-.+.-++|+-||++ +.+..|=|++-|-+..++..
T Consensus 12 evK~L~~eLGEe~----l~~~ID~Fi~Ln~glEskrGe~-Fv~vsIlGFlEGiLttLK~K 66 (103)
T 2hjm_A 12 KVKELCLELEEEN----LAKAIERFITLTHGIEKTRGEA-FAKASIYGFLEGILTTLKMK 66 (103)
T ss_dssp HHHHHHHTTTCHH----HHHHHHHHHHTTSHHHHHHCHH-HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhHHH----HHHHHHHHHHHhhhHhhhchHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4445555555443 34443 455678999999987 88888999999998888775
No 3
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=15.88 E-value=34 Score=22.49 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=9.1
Q ss_pred chhhhhhhhhhc------cchhH
Q 036913 115 GLTYGLREARGA------HDWKN 131 (176)
Q Consensus 115 g~ec~ie~~Rgk------~D~~N 131 (176)
+.|.++|++|+. +||.|
T Consensus 24 ~~E~sfeEllA~sRg~~~~~w~~ 46 (54)
T 2i3t_B 24 RLEFSLEEVLAISRNVYKRVRTN 46 (54)
T ss_dssp -CBCCHHHHHHHTTTCSSCC---
T ss_pred cceeeHHHHHHHhcCcccccccc
Confidence 457777777664 67776
No 4
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=14.15 E-value=3.1e+02 Score=21.05 Aligned_cols=30 Identities=7% Similarity=0.195 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHhccchhhHHHHHHHHhch
Q 036913 87 TNRKSLEAMVKNTGKESLQWGVVAGIYSGL 116 (176)
Q Consensus 87 ~~~~~~~~~~k~~gk~g~~fg~vgglfsg~ 116 (176)
+..+.+..+++++-+.+.+||-+-++|+..
T Consensus 87 ~~~~~f~~Va~elF~dGinWGRIVaLfaF~ 116 (177)
T 2y6w_A 87 SAQQRFTQVSDELFQGGPNWGRLVAFFVFG 116 (177)
T ss_dssp GHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 445677788888888889999665555543
No 5
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=13.73 E-value=87 Score=29.11 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHHhccchhhHHHHHHHHhchhhhhhhhhh--ccchhHH----------HHHHHHHHHHHhhccCCCcHHHHHHhHHH
Q 036913 94 AMVKNTGKESLQWGVVAGIYSGLTYGLREARG--AHDWKNS----------AVAGAITGVALALTIDDSSHEQVVQCAIT 161 (176)
Q Consensus 94 ~~~k~~gk~g~~fg~vgglfsg~ec~ie~~Rg--k~D~~Ns----------~iAGa~TGa~la~~~g~g~~~~~vg~A~~ 161 (176)
.+.+.+++-+..|++++=++.+.+...|-.-+ ..||..= .+|.+++..+++..-+ ..-.++|-++.
T Consensus 505 dmAkNL~kfSKaFg~tgKvIka~DV~eK~kkG~ETGNWrPLfLELES~aaG~aASaVaAfaFS~~lG--tPLGIlGiALI 582 (602)
T 1cii_A 505 DISSNLNRFSRGLGYAGKFTSLADWITEFGKAVRTENWRPLFVKTETIIAGNAATALVALVFSILTG--SALGIIGYGLL 582 (602)
T ss_dssp HHHHHHHHHHHHHTCCSCBCCHHHHHHHHHHHHHSTTCHHHHHHHTTTBTTCBHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcCCCchhHHHHHHHHHHhhhHHHHHHHHHHHHHh--hHHHHHHHHHH
Confidence 34555555566676666555555544443333 6777642 2345555556666664 23356777666
Q ss_pred HHHHHHHHH
Q 036913 162 GAAISTAAN 170 (176)
Q Consensus 162 gaAfS~aie 170 (176)
.+..+..||
T Consensus 583 mAvVgSlID 591 (602)
T 1cii_A 583 MAVTGALID 591 (602)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 666666554
No 6
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=13.61 E-value=3.3e+02 Score=20.90 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=23.8
Q ss_pred cchHHHHHHHHHHhccchhhHHHHHHHHhch
Q 036913 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSGL 116 (176)
Q Consensus 86 ~~~~~~~~~~~k~~gk~g~~fg~vgglfsg~ 116 (176)
++..+.+..+++++-+.+.+||-+-++|+..
T Consensus 86 ~~a~~~F~~Va~elF~dGiNWGRIVaLfaF~ 116 (169)
T 4aq3_A 86 FTARGRFATVVEELFRDGVNWGRIVAFFEFG 116 (169)
T ss_dssp TTHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3556888899999999999999665555543
No 7
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=12.06 E-value=1.1e+02 Score=22.29 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.9
Q ss_pred HHHHHHhchhhhhhhhhhcc------chhHHH
Q 036913 108 VVAGIYSGLTYGLREARGAH------DWKNSA 133 (176)
Q Consensus 108 ~vgglfsg~ec~ie~~Rgk~------D~~Ns~ 133 (176)
.+..+|..++--.-++|.+. .|+||+
T Consensus 46 tL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSI 77 (110)
T 3l2c_A 46 TLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSI 77 (110)
T ss_dssp CHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHH
T ss_pred CHHHHHHHHHHhCchhhcCccccCCCCcccch
Confidence 56789999999999999764 599997
No 8
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=11.88 E-value=64 Score=25.28 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=16.9
Q ss_pred hchhhhhhhhhh-ccchhH--HHHHHHH
Q 036913 114 SGLTYGLREARG-AHDWKN--SAVAGAI 138 (176)
Q Consensus 114 sg~ec~ie~~Rg-k~D~~N--s~iAGa~ 138 (176)
++++-.++.+|. +|||.| -++.|.+
T Consensus 16 ~~~~~~~~~LR~qrHdf~NkLqvI~GLl 43 (192)
T 1ixm_A 16 ALTNELIHLLGHSRHDWMNKLQLIKGNL 43 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344556677776 899999 4556654
No 9
>2xa0_A BCL-2, apoptosis regulator BCL-2; cell death; 2.70A {Homo sapiens} PDB: 1gjh_A 1ysw_A* 2o21_A* 2o22_A* 1g5m_A
Probab=11.74 E-value=3.5e+02 Score=21.66 Aligned_cols=30 Identities=17% Similarity=0.410 Sum_probs=22.3
Q ss_pred cchHHHHHHHHHHhccchhhHHHHHHHHhc
Q 036913 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSG 115 (176)
Q Consensus 86 ~~~~~~~~~~~k~~gk~g~~fg~vgglfsg 115 (176)
++..+.+..+++++=+.+.+||-+-++|+.
T Consensus 124 ~~a~~~F~~Va~elF~DGiNWGRIVaLfaF 153 (207)
T 2xa0_A 124 FTARGRFATVVEELFRDGVNWGRIVAFFEF 153 (207)
T ss_dssp TTHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 356778888888888888999955555543
No 10
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=11.27 E-value=3.9e+02 Score=20.60 Aligned_cols=30 Identities=7% Similarity=0.235 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHhccchhhHHHHHHHHhc
Q 036913 86 ETNRKSLEAMVKNTGKESLQWGVVAGIYSG 115 (176)
Q Consensus 86 ~~~~~~~~~~~k~~gk~g~~fg~vgglfsg 115 (176)
++..+.+..+++++=+.+.+||-+-++|+.
T Consensus 78 ~~~~~~F~~Va~elF~dGinWGRIValfaF 107 (188)
T 1o0l_A 78 GSAQQRFTQVSDELFQGGPNWGRLVAFFVF 107 (188)
T ss_dssp STTHHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 344678888999999889999955555543
Done!